#Contains_Novel_or_Only_Known(Annotated)_Junctions as_event_type gene_name chr strand exclusion_junctions inclusion_junctions exclusion_exons inclusion_exons intron-exon_junctions neighboring_constitutive_exons virtual Untreated CG10203 CG10851 CG17136 CG1987 CG4602 CG5442 CG5655 CG10377 CG12749 CG13425 CG16901 CG17838 CG18426 CG30122 CG31000 CG6946 CG7437 CG9373 CG9983 CG10279 CG1646 CG3312 CG6227 CG5836 CG6841 CG8241 CG8749 CG1101 CG1559 CG16788 CG8781 CG10128 CG10328 CG11266 CG18350 CG3584 CG4262 CG5422 CG6049 CG7878 CG7971 CG8019 CG8912 CG9412 CG31716 CG32423 CG3249 CG33106 CG4760 CG4816 CG4878 CG5170 CG5821 CG6203 CG6779 CG8636 N intron_retention Clc,CG6951 chr3L + chr3L_20234785_20235884 chr3L_20234784_20234785;chr3L_20235884_20235885 chr3L_20234707_20234784;chr3L_20235885_20236816 20.83 NA NA 50.00 NA NA NA NA NA NA NA 25.00 NA NA NA 12.50 NA NA NA 20.83 NA NA 38.46 NA NA NA 100.00 33.33 100.00 NA NA NA NA NA NA NA NA NA NA 15.38 33.33 20.00 NA NA NA 13.33 NA NA 20.00 NA NA NA NA NA NA 20.00 NA 10.53 K alternative_acceptor I_chr3L_212783_212843,Kaz1-ORFB,Kaz1-ORFA_Kaz1-ORFB,CG13877 chr3L + chr3L_218196_218282 chr3L_218196_218279 chr3L_218127_218195;chr3L_218283_218658 55.91 66.67 60.00 NA NA NA 52.63 68.18 44.44 NA NA 68.18 NA 52.94 55.56 63.64 56.25 58.33 50.00 53.12 60.00 NA 63.64 55.56 NA 63.64 53.85 NA NA 63.64 53.33 75.00 50.00 55.56 60.00 NA 54.55 NA 50.00 52.63 50.00 62.50 66.67 NA NA 43.75 80.95 NA 45.45 62.50 60.00 36.36 NA 68.75 53.85 53.33 68.18 NA K jcn_only_AD CG31217 chr3R - chr3R_12479557_12479627 chr3R_12479557_12479623 chr3R_12479253_12479556;chr3R_12479628_12480093 91.30 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 91.30 K intron_retention Myo31DF,I_chr2L_10506249_10506683,I_chr2L_10506446_10506542 chr2L - chr2L_10506107_10506683 chr2L_10506106_10506107;chr2L_10506683_10506684 chr2L_10505926_10506106;chr2L_10506684_10506780 18.06 14.77 21.05 19.81 11.67 12.77 37.63 10.57 15.54 21.51 22.86 11.29 29.03 15.96 12.84 19.26 23.21 12.22 20.22 11.82 21.43 16.34 16.27 14.55 32.35 20.78 25.96 14.97 36.44 15.79 12.41 27.27 22.47 14.93 23.91 26.03 15.45 15.12 14.89 13.56 28.75 18.78 21.25 9.74 15.94 20.37 14.86 23.47 14.72 20.27 22.06 19.64 16.28 13.56 18.42 18.06 20.27 17.31 K intron_retention I_chr2R_7778750_7781059,I_chr2R_7778971_7781059,Ef1alpha48D,I_chr2R_7779690_7780997,I_chr2R_7779690_7781065,I_chr2R_7779690_7783075,I_chr2R_7779719_7781059,I_chr2R_7779813_7781059,I_chr2R_7779892_7781059,EF_chr2R_7779896_7781065,I_chr2R_7780542_7781059,I_chr2R_7780580_7781059,snoRNA:Me28S-A1322,I_chr2R_7780840_7781059,I_chr2R_7780877_7781059,RI_chr2R_7781135_7783075 chr2R + chr2R_7779892_7781065 chr2R_7779891_7779892;chr2R_7781065_7781066 chr2R_7779804_7779891;chr2R_7781066_7781097 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.50 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention htt,I_chr3R_24527763_24528033,I_chr3R_24542203_24543363 chr3R + chr3R_24547447_24547531 chr3R_24547446_24547447;chr3R_24547531_24547532 chr3R_24546562_24547446;chr3R_24547532_24547719 0.00 0.00 3.70 2.38 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.17 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG12811,RI_chr3R_5873666_5874292 chr3R - chr3R_5873666_5874292 chr3R_5873666_5874138 chr3R_5873566_5873665;chr3R_5874293_5874392 100.00 100.00 100.00 100.00 100.00 100.00 98.31 98.78 100.00 96.67 100.00 99.02 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.10 100.00 NA 100.00 100.00 96.55 100.00 97.67 100.00 NA 100.00 100.00 100.00 100.00 99.01 100.00 NA 100.00 100.00 100.00 100.00 100.00 99.17 100.00 100.00 100.00 100.00 96.36 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.44 98.63 100.00 100.00 K alternative_donor RpL15 chr3LHet + chr3LHet_2398018_2398127;chr3LHet_2397859_2398127;chr3LHet_2397925_2398127;chr3LHet_2397992_2398127;chr3LHet_2398060_2398127;chr3LHet_2397841_2398127;chr3LHet_2397820_2398127;chr3LHet_2398053_2398127 chr3LHet_2398002_2398127 chr3LHet_2398128_2398454;chr3LHet_2397802_2397819 0.35 0.00 0.00 0.35 0.00 0.00 1.39 0.36 1.56 4.17 0.00 1.79 0.00 3.70 0.00 3.45 0.00 0.00 0.00 0.00 0.00 1.45 0.00 4.35 0.00 0.00 3.57 1.07 0.84 0.00 1.89 0.44 0.46 0.39 2.38 1.43 0.00 0.00 0.00 0.10 0.74 0.00 0.00 0.22 0.49 0.61 5.56 0.43 0.54 4.35 4.35 0.00 0.00 0.00 1.20 3.85 0.00 0.00 K intron_retention CG13784,I_chr2L_7209439_7209522,I_chr2L_7219131_7219918 chr2L - chr2L_7219131_7219859 chr2L_7219130_7219131;chr2L_7219859_7219860 chr2L_7219031_7219130;chr2L_7219860_7219986 87.30 91.67 82.61 95.24 72.73 93.75 87.10 90.32 85.11 90.00 92.31 80.56 71.43 87.50 95.00 95.00 100.00 87.50 84.38 85.00 78.57 85.71 88.89 83.33 92.31 93.33 83.33 100.00 100.00 72.00 75.00 76.92 84.62 88.89 76.00 100.00 81.82 88.89 80.95 85.11 92.31 78.05 78.95 80.65 NA 85.71 93.33 90.91 82.93 90.00 85.71 92.31 NA 88.89 88.89 80.00 NA 93.75 K alternative_donor CG1358,I_chr2R_3485171_3489936,CEF_chr2R_3495963_3501113 chr2R - chr2R_3493750_3501965 chr2R_3493750_3501438 chr2R_3493449_3493749;chr2R_3501966_3502037 92.31 93.75 92.31 90.00 92.31 100.00 100.00 88.24 92.59 76.47 100.00 84.62 100.00 92.31 94.44 93.75 90.91 85.71 87.50 92.00 100.00 70.00 95.45 90.91 90.00 100.00 100.00 100.00 100.00 86.67 90.00 90.00 100.00 88.89 93.75 92.86 82.61 94.12 100.00 96.43 90.91 85.71 100.00 92.86 88.89 100.00 90.91 100.00 100.00 90.91 90.00 100.00 100.00 75.00 100.00 85.71 90.91 85.71 K alternative_donor M(2)21AB,I_chr2L_107839_110405,I_chr2L_107957_108587,I_chr2L_110878_111037,I_chr2L_112022_112689,RI_chr2L_132256_132482 chr2L + chr2L_108347_108587;chr2L_108227_108587;chr2L_108102_108587 chr2L_107839_108587 chr2L_108588_108687;chr2L_107833_107838 0.00 0.00 0.00 0.00 0.00 0.00 2.70 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 1.28 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 5.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette RI_chrX_11473566_11473702,roX2,noncoding_23149,I_chrX_11475074_11475402 chrX + chrX_11473433_11473702 chrX_11473433_11473544;chrX_11473562_11473702 chrX_11473545_11473561 chrX_11473419_11473432;chrX_11473703_11473726 50.00 NA NA NA NA NA NA 66.67 57.14 NA NA 64.29 NA NA NA 46.15 NA NA NA 57.89 NA NA NA NA NA 50.00 NA NA NA NA 45.45 NA NA 53.33 NA NA NA NA NA 50.00 NA 42.86 NA NA NA 45.45 NA NA 64.29 NA NA NA NA NA 40.00 NA NA NA K jcn_only_AA Tif-IA,RI_chr2L_22250854_22257652 chr2L + chr2L_22253333_22253424;chr2L_22253333_22253421 chr2L_22253333_22253386 chr2L_22253256_22253332;chr2L_22253425_22253685 3.33 NA NA NA NA NA 1.96 0.00 6.06 NA NA 3.70 NA NA NA NA NA NA NA 3.70 NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA 4.76 NA NA 3.45 NA NA NA 0.00 NA NA 3.33 NA 4.76 NA NA NA NA NA NA NA K alternative_acceptor Dystrophin chr3R + chr3R_15394994_15410962 chr3R_15394994_15410934 chr3R_15394977_15394993;chr3R_15410963_15410968 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention tmod,I_chr3R_26402561_26402900 chr3R + chr3R_26403281_26403838 chr3R_26403280_26403281;chr3R_26403838_26403839 chr3R_26402901_26403280;chr3R_26403839_26404436 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 1.09 N alternative_acceptor Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2629579_2629913;chr3L_2629585_2629913;chr3L_2629684_2629913;chr3L_2629527_2629913;chr3L_2629597_2629913 chr3L_2629613_2629913 chr3L_2629914_2629921;chr3L_2629427_2629526 0.56 0.50 0.34 0.76 0.58 0.37 0.81 0.61 0.62 0.00 0.63 0.96 0.24 0.60 0.69 0.38 0.93 0.56 0.27 0.26 0.00 0.00 0.34 0.58 1.03 0.72 1.46 0.00 0.69 0.56 0.78 0.83 0.44 0.77 0.71 0.81 1.06 0.69 0.43 0.25 0.00 0.49 0.35 0.51 0.00 0.26 0.00 0.19 1.43 0.93 0.33 0.72 0.00 0.00 0.63 0.64 0.77 0.30 K intron_retention Gga chrX + chrX_9495445_9496113 chrX_9495444_9495445;chrX_9496113_9496114 chrX_9495287_9495444;chrX_9496114_9496708 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6454,I_chr3R_20175958_20178905 chr3R + chr3R_20180603_20180659 chr3R_20180602_20180603;chr3R_20180659_20180660 chr3R_20180515_20180602;chr3R_20180660_20181046 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 NA 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Tm1,I_chr3R_11125070_11126469,I_chr3R_11126545_11128874,I_chr3R_11128245_11128874 chr3R + chr3R_11126545_11127345 chr3R_11126544_11126545;chr3R_11127345_11127346 chr3R_11126470_11126544;chr3R_11127346_11127408 0.00 0.00 0.00 0.77 0.00 0.00 0.63 0.67 0.64 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG8709,I_chr2R_4027128_4027182,RI_chr2R_4029534_4029599,I_chr2R_4030580_4030636,I_chr2R_4030580_4030746,I_chr2R_4035901_4043493 chr2R - chr2R_4030580_4033256;chr2R_4030580_4030636 chr2R_4030580_4033259 chr2R_4030480_4030579;chr2R_4033260_4033265 92.31 93.18 95.12 94.12 92.59 95.24 90.70 90.00 90.74 88.24 93.94 92.13 92.00 89.47 88.57 91.53 90.70 90.00 93.85 89.87 90.32 87.50 90.41 93.22 96.08 93.62 90.32 92.31 86.84 93.02 92.50 95.24 91.43 92.31 90.91 92.31 91.67 96.43 93.88 91.84 95.24 91.58 90.24 91.30 88.89 93.75 93.33 88.24 92.75 96.55 92.75 93.94 96.30 89.47 90.74 96.55 94.44 94.29 K mutually_exclusive CG11299,noncoding_8970,I_chr2R_19602423_19609308,I_chr2R_19619053_19619186 chr2R + chr2R_19601642_19609732,chr2R_19610399_19616571 chr2R_19601642_19602229,chr2R_19602423_19616571 chr2R_19609733_19610398 chr2R_19602230_19602422 chr2R_19601628_19601641;chr2R_19616572_19616757 30.95 33.33 NA 66.67 42.86 NA NA 0.00 16.67 NA NA 60.00 0.00 50.00 NA 33.33 NA 0.00 33.33 50.00 NA NA 8.33 0.00 20.00 66.67 0.00 50.00 0.00 0.00 50.00 NA NA NA 50.00 NA NA 16.67 50.00 50.00 25.00 16.67 0.00 NA 0.00 0.00 50.00 33.33 33.33 28.57 0.00 0.00 40.00 20.00 66.67 0.00 33.33 33.33 K alternative_acceptor CG32436 chr3L + chr3L_21343362_21343438 chr3L_21343362_21343419 chr3L_21343187_21343361;chr3L_21343439_21343562 2.78 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 5.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention mfrn,I_chr3R_23771063_23772599 chr3R - chr3R_23770437_23770500 chr3R_23770436_23770437;chr3R_23770500_23770501 chr3R_23770275_23770436;chr3R_23770501_23770736 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.80 8.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG15717,RI_chrX_13023070_13023131 chrX + chrX_13023222_13023338 chrX_13023221_13023222;chrX_13023338_13023339 chrX_13023132_13023221;chrX_13023339_13024417 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG18177,CRE_chr3L_9721717_9721814,I_chr3L_9723741_9723833 chr3L + chr3L_9721715_9721812 chr3L_9721714_9721715;chr3L_9721812_9721813 chr3L_9721617_9721714;chr3L_9721813_9722117 0.00 0.00 NA 14.29 NA NA NA 20.00 8.33 NA NA 9.52 NA NA NA 6.67 0.00 NA NA 0.00 NA 5.00 4.17 NA 0.00 0.00 22.22 14.29 NA NA NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 7.41 6.67 NA 0.00 0.00 NA NA 13.04 9.09 0.00 NA NA 0.00 NA 10.53 NA NA K intron_retention pps chr3R + chr3R_8246149_8246221 chr3R_8246148_8246149;chr3R_8246221_8246222 chr3R_8245952_8246148;chr3R_8246222_8246384 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 0.00 0.00 2.08 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA alpha-Cat,I_chr3L_23319861_23321813,I_chr3L_23322620_23322985,I_chr3L_23327841_23328002 chr3L - chr3L_23322499_23322985 chr3L_23322620_23322985 chr3L_23322986_23323085;chr3L_23322330_23322498 0.00 0.00 0.00 1.14 0.00 0.00 1.27 0.00 0.00 2.00 0.00 0.63 2.94 0.00 1.11 1.16 0.00 0.00 1.05 1.21 0.00 6.52 0.00 1.43 0.00 1.37 1.22 0.00 3.85 0.00 4.17 0.00 1.11 0.65 0.00 0.00 2.50 0.00 1.85 0.00 1.45 0.00 0.00 2.70 2.70 3.17 0.00 0.89 0.64 1.61 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10103,noncoding_10997 chr3L - chr3L_6747594_6748519 chr3L_6747593_6747594;chr3L_6748519_6748520 chr3L_6747493_6747593;chr3L_6748520_6749258 9.52 15.38 12.50 10.68 14.29 7.02 7.22 10.11 15.96 14.29 10.81 19.61 18.00 9.52 5.97 14.58 12.50 18.75 10.64 8.82 7.14 5.26 16.07 12.82 11.76 4.84 8.77 18.18 3.08 1.82 10.77 4.69 4.35 12.50 8.62 2.60 8.93 13.51 8.62 5.65 4.81 12.00 9.26 10.42 4.23 5.83 11.63 6.96 13.08 8.82 15.56 9.09 3.39 6.52 10.77 9.80 3.12 3.55 K intron_retention sd,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15714587_15715041 chrX_15714586_15714587;chrX_15715041_15715042 chrX_15714456_15714586;chrX_15715042_15715058 25.00 NA NA 20.00 NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Rab30,I_chr2L_7032178_7032236 chr2L - chr2L_7032178_7032244;chr2L_7032178_7032310;chr2L_7032178_7032321 chr2L_7032178_7032236 chr2L_7032078_7032177;chr2L_7032322_7032336 2.27 3.33 2.86 0.00 NA 2.86 0.00 0.00 3.85 5.00 7.14 1.96 9.52 NA 3.70 2.78 5.00 0.00 3.03 1.89 0.00 17.24 2.78 0.00 0.00 4.76 0.00 4.76 2.27 0.00 0.00 3.85 2.44 2.63 NA 0.00 0.00 0.00 8.57 3.39 7.69 7.69 4.17 2.86 2.27 2.04 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 3.23 0.00 NA 0.00 K cassette CG11155,I_chr4_1151213_1151903,I_chr4_1152220_1152710,I_chr4_1152585_1152687 chr4 + chr4_1152220_1152710 chr4_1152220_1152326;chr4_1152585_1152710 chr4_1152327_1152584 chr4_1152120_1152219;chr4_1152711_1152723 100.00 100.00 93.75 100.00 100.00 100.00 100.00 97.30 97.06 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 88.89 95.45 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 87.50 100.00 NA 93.75 100.00 100.00 100.00 90.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 K intron_retention BRWD3 chr3R + chr3R_20151805_20151861 chr3R_20151804_20151805;chr3R_20151861_20151862 chr3R_20151472_20151804;chr3R_20151862_20152617 83.33 82.61 70.27 96.30 77.14 75.00 84.78 87.72 78.75 86.15 84.85 84.62 77.14 78.12 84.62 91.67 84.21 82.93 76.67 83.50 82.35 87.12 93.18 86.36 87.27 90.00 82.93 70.93 79.17 86.67 90.24 82.72 79.50 86.15 86.44 90.79 81.19 89.23 82.64 82.88 92.86 84.91 83.33 77.78 81.20 88.89 83.33 86.16 85.51 81.18 83.33 83.33 81.97 91.49 88.37 83.10 81.82 81.60 K intron_retention CG7188 chr3L - chr3L_8300481_8300893 chr3L_8300480_8300481;chr3L_8300893_8300894 chr3L_8300192_8300480;chr3L_8300894_8301064 1.29 1.24 2.50 3.87 1.47 0.88 1.45 1.14 0.96 0.00 1.71 2.68 3.05 1.80 0.00 2.42 1.80 2.27 0.00 2.04 2.17 1.07 1.28 0.75 3.01 1.46 1.27 1.94 0.70 0.00 0.68 0.00 3.51 1.61 1.83 2.91 0.00 0.00 0.00 2.42 4.23 0.95 0.00 0.00 0.00 1.17 0.60 6.52 2.55 0.84 0.94 0.93 1.59 1.29 1.43 1.58 1.04 1.65 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2389272_2395659 chrX_2389272_2390808;chrX_2390959_2391350;chrX_2391522_2392054;chrX_2392149_2392515;chrX_2392665_2393243;chrX_2393712_2394269;chrX_2394396_2395151;chrX_2395275_2395659 chrX_2390809_2390958;chrX_2391351_2391521;chrX_2392055_2392148;chrX_2392516_2392664;chrX_2393244_2393711;chrX_2394270_2394395;chrX_2395152_2395274 chrX_2389172_2389271;chrX_2395660_2395759 26.66 NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG30118,I_chr2R_14320281_14325712,I_chr2R_14325118_14325712 chr2R - chr2R_14325118_14325712 chr2R_14325118_14325444;chr2R_14325483_14325712 chr2R_14325445_14325482 chr2R_14325111_14325117;chr2R_14325713_14325780 72.73 66.67 85.71 93.33 NA NA 72.73 84.62 76.92 NA NA 83.33 NA 100.00 87.50 83.33 NA 90.00 88.89 81.25 NA 46.67 60.00 50.00 NA NA 80.00 87.50 NA NA 73.33 85.71 64.29 90.91 54.55 NA 53.85 NA 58.33 41.67 50.00 78.95 NA 70.00 50.00 70.00 54.55 80.00 72.73 61.54 70.00 NA NA 55.56 88.89 58.33 NA 68.42 K alternative_donor chico,I_chr2L_10246534_10246899 chr2L - chr2L_10246040_10246184;chr2L_10246040_10246755;chr2L_10246040_10246867;chr2L_10246040_10246899 chr2L_10246040_10247024 chr2L_10245878_10246039;chr2L_10247025_10247051 0.00 0.00 0.00 3.23 0.00 0.00 3.45 2.78 4.35 0.00 0.00 2.63 4.55 0.00 0.00 4.65 5.26 5.88 3.85 3.77 5.56 6.25 0.00 0.00 0.00 5.26 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 4.55 0.00 0.00 2.70 5.88 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 3.23 0.00 8.33 0.00 K intron_retention Vha100-2 chr3R - chr3R_14219132_14222507 chr3R_14219131_14219132;chr3R_14222507_14222508 chr3R_14218994_14219131;chr3R_14222508_14222727 15.38 NA NA 28.57 NA 15.38 15.62 30.00 24.24 NA NA 19.35 9.09 11.76 35.00 18.52 17.65 26.67 10.53 21.88 NA 13.04 15.00 NA NA 23.81 14.29 NA NA NA 0.00 NA NA 15.38 NA 14.29 NA NA 14.29 NA NA 15.62 12.50 NA NA NA NA NA 13.51 NA NA NA NA NA 25.00 NA 14.29 NA K alternative_donor CG31365,RI_chr3R_18950918_18950979 chr3R - chr3R_18950918_18950983 chr3R_18950918_18950979 chr3R_18950818_18950917;chr3R_18950984_18951079 4.17 0.00 NA 0.00 NA 0.00 0.00 5.56 0.00 NA NA 4.35 NA NA 0.00 4.55 0.00 7.14 NA 2.94 0.00 11.76 0.00 0.00 7.69 7.14 4.17 NA NA NA 9.52 NA 14.29 4.55 NA 5.00 0.00 NA NA 0.00 0.00 7.14 NA NA NA 0.00 8.70 6.67 0.00 4.35 4.55 4.55 NA 0.00 5.56 3.85 5.26 0.00 K jcn_only_AA CG9425,I_chr3L_14783173_14784369 chr3L + chr3L_14783173_14784970;chr3L_14783173_14785138 chr3L_14783173_14784369 chr3L_14783073_14783172;chr3L_14785139_14785560 3.12 NA NA 0.00 NA NA 0.00 3.12 0.00 NA NA 9.68 NA NA NA 3.12 NA NA 0.00 18.18 NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA 10.71 NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA K mutually_exclusive Galpha49B,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8504447_8504960,chr2R_8505090_8505299 chr2R_8504447_8504576,chr2R_8504706_8505299 chr2R_8504961_8505089 chr2R_8504577_8504705 chr2R_8504292_8504446;chr2R_8505300_8505429 100.00 100.00 100.00 96.88 100.00 100.00 98.28 97.56 99.05 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.00 100.00 100.00 100.00 100.00 100.00 97.62 98.95 100.00 96.88 98.18 100.00 97.87 94.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 K jcn_only_AD CG17159,CG17162,noncoding_25215 chrXHet - chrXHet_69232_75250;chrXHet_69232_75430 chrXHet_69232_75279 chrXHet_69195_69231;chrXHet_75431_75453 20.83 NA 16.13 23.33 NA 10.00 30.56 20.59 13.79 NA 6.45 9.52 NA NA 17.39 19.23 NA 43.48 NA 20.00 36.36 NA 26.09 20.83 NA 16.13 NA NA NA NA 9.52 NA NA 21.95 NA NA 27.59 23.81 16.22 30.43 NA 22.86 NA 10.00 NA NA NA NA 20.83 NA 20.83 23.08 NA NA 29.41 NA NA NA K intron_retention didum,I_chr2R_3393005_3393348 chr2R + chr2R_3393005_3393153 chr2R_3393004_3393005;chr2R_3393153_3393154 chr2R_3392905_3393004;chr2R_3393154_3393251 0.00 0.00 0.00 7.14 2.38 0.00 0.00 0.00 1.45 0.00 0.00 5.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 3.92 0.00 0.00 0.00 0.00 8.70 0.00 3.45 NA 9.68 0.00 0.00 0.00 0.00 0.00 5.00 0.00 4.44 0.00 0.00 0.00 3.12 1.56 0.00 2.86 0.00 0.00 0.00 0.00 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Pomp,I_chr2L_20788087_20788402 chr2L + chr2L_20788087_20788402 chr2L_20788116_20788402 chr2L_20788403_20788502;chr2L_20787987_20788086 100.00 100.00 100.00 99.63 100.00 99.58 100.00 100.00 99.56 99.56 100.00 99.60 99.46 100.00 100.00 100.00 100.00 99.56 100.00 99.62 100.00 99.02 99.73 99.81 100.00 100.00 99.80 100.00 99.57 100.00 99.67 100.00 100.00 99.65 99.17 100.00 99.86 99.79 100.00 99.57 99.45 99.62 100.00 100.00 100.00 99.76 99.71 100.00 99.71 100.00 100.00 100.00 100.00 99.81 100.00 99.81 100.00 100.00 N jcn_only_AA CG13900,I_chr3L_830745_830907 chr3L - chr3L_830745_830907;chr3L_830814_830907;chr3L_830729_830907 chr3L_830715_830907 chr3L_830908_831007;chr3L_830702_830714 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG10737 chr2R + chr2R_15053034_15058190 chr2R_15053034_15058122 chr2R_15053020_15053033;chr2R_15058191_15058666 80.95 72.73 81.82 75.00 80.00 NA 65.38 66.67 67.86 88.89 61.54 80.95 70.00 63.64 81.82 71.43 81.82 73.33 76.47 87.50 83.33 84.62 76.92 84.62 91.67 93.75 92.86 86.67 95.00 91.67 76.19 84.62 95.65 76.19 NA 69.23 81.82 NA 72.73 95.83 91.67 68.00 58.82 80.00 90.91 90.48 85.71 91.18 83.33 NA 66.67 66.67 NA NA 71.43 80.00 50.00 89.47 K intron_retention crol,I_chr2L_11799403_11802904 chr2L - chr2L_11806158_11808013 chr2L_11806157_11806158;chr2L_11808013_11808014 chr2L_11806048_11806157;chr2L_11808014_11808100 0.00 0.00 0.00 1.72 0.00 0.00 3.23 4.17 0.00 0.00 0.00 2.97 0.00 0.00 6.52 1.92 0.00 8.33 0.00 0.00 0.00 6.25 0.95 0.00 0.00 0.00 8.51 7.55 4.44 0.00 1.69 0.00 0.00 0.00 3.03 0.00 0.00 0.00 1.52 3.49 0.00 1.00 0.00 3.92 6.25 0.00 0.00 4.72 4.30 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention mRpS28 chr2R - chr2R_14501930_14501986 chr2R_14501929_14501930;chr2R_14501986_14501987 chr2R_14501643_14501929;chr2R_14501987_14502108 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 5.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 K intron_retention I_chrX_15223901_15223968,HDAC6,I_chrX_15232958_15233665 chrX + chrX_15229302_15229382 chrX_15229301_15229302;chrX_15229382_15229383 chrX_15229023_15229301;chrX_15229383_15229421 0.00 0.00 NA 7.14 NA NA 0.00 3.85 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 20.00 NA NA 0.00 11.76 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 6.06 0.00 NA 0.00 0.00 NA 0.00 5.41 0.00 0.00 NA NA NA 0.00 NA NA 0.00 N alternative_donor CG32529 chrX + chrX_19795641_19795900;chrX_19795522_19795900 chrX_19795687_19795900 chrX_19795901_19798251;chrX_19794649_19795521 0.92 1.85 0.55 2.05 0.60 1.31 1.90 1.24 0.80 0.54 2.02 0.86 1.86 1.27 1.84 1.70 0.00 0.51 0.73 0.92 1.42 14.46 1.11 0.50 0.59 0.00 1.26 1.27 2.16 1.28 1.05 1.14 0.92 0.44 0.83 1.70 0.68 0.81 0.60 0.27 1.20 0.96 0.81 0.32 0.00 1.80 0.91 1.99 1.10 0.78 0.83 0.00 0.00 1.25 1.09 0.75 0.98 0.00 K alternative_donor tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_560576_560883;chr3R_560576_560847 chr3R_560576_560886 chr3R_560204_560575;chr3R_560887_561068 2.10 1.68 3.03 0.92 1.20 3.15 1.53 4.68 2.55 1.45 7.14 2.35 8.41 0.91 4.35 4.85 1.98 0.93 2.74 2.44 8.65 0.00 1.12 1.32 1.14 1.35 2.93 1.06 0.97 4.17 2.27 1.10 0.95 2.73 2.06 NA 0.78 0.96 1.33 0.54 1.68 2.75 4.72 0.77 2.08 2.76 2.42 3.31 3.27 0.79 2.66 3.00 1.06 2.13 2.94 0.71 2.44 5.11 K alternative_acceptor Fur1,I_chr3R_21179590_21179870,CEI_chr3R_21210600_21222433,I_chr3R_21257704_21287086 chr3R - chr3R_21177936_21179870;chr3R_21177915_21179870 chr3R_21179590_21179870 chr3R_21179871_21179970;chr3R_21177839_21177914 1.03 0.00 2.44 0.00 0.00 0.00 1.92 1.82 0.86 0.00 13.79 1.98 0.00 0.00 0.00 2.44 0.00 2.00 0.00 0.85 3.12 1.10 1.19 1.52 1.47 0.00 1.69 9.68 1.03 0.00 1.82 0.00 1.03 1.23 1.52 0.00 1.03 1.79 0.79 0.90 1.56 0.79 0.00 0.93 0.77 0.79 1.47 0.62 1.05 1.82 1.12 0.00 0.00 1.47 1.75 1.82 0.00 0.71 K alternative_acceptor CG9932,I_chr2L_13031395_13035824 chr2L - chr2L_13028540_13028867 chr2L_13028552_13028867 chr2L_13028868_13029642;chr2L_13027809_13028539 48.48 54.17 54.17 57.14 52.63 63.16 44.00 58.62 45.65 53.33 60.00 43.59 35.71 35.71 41.38 55.17 64.29 47.06 54.55 46.81 53.85 49.41 48.39 66.67 62.50 33.33 58.82 54.55 44.00 41.94 57.14 41.67 47.37 48.48 47.62 61.11 44.74 46.15 51.61 46.94 64.29 41.38 47.83 54.17 42.11 50.00 50.00 49.02 45.00 45.00 45.00 47.06 43.75 54.55 43.33 58.33 53.85 33.33 N jcn_only_AD CG32594 chrX + chrX_14927496_14927638;chrX_14927033_14927638;chrX_14926607_14927638 chrX_14927381_14927638 chrX_14927639_14928125;chrX_14925576_14926606 4.21 3.95 3.00 13.64 5.61 4.63 1.29 8.33 3.11 2.74 12.57 5.04 0.71 6.35 3.80 7.34 2.86 6.74 8.94 6.28 9.69 7.76 5.34 4.48 2.70 3.23 5.33 7.58 11.06 1.05 4.55 6.93 8.25 2.27 5.81 4.21 2.56 4.07 4.33 6.25 2.94 4.94 4.49 2.98 3.04 4.29 3.57 2.29 3.86 2.63 6.25 2.46 3.31 2.79 4.21 3.30 3.18 0.42 K intron_retention mus308 chr3R - chr3R_8532951_8533003 chr3R_8532950_8532951;chr3R_8533003_8533004 chr3R_8532743_8532950;chr3R_8533004_8535227 0.00 NA 7.69 3.45 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 K intron_retention CG1681,RI_chrX_13299118_13299649,RI_chrX_13299118_13301936,I_chrX_13299118_13302688,I_chrX_13300335_13302320 chrX + chrX_13299118_13302320 chrX_13299117_13299118;chrX_13302320_13302321 chrX_13299018_13299117;chrX_13302321_13302420 1.59 1.38 1.27 2.67 0.00 0.00 2.11 0.00 1.17 2.47 6.25 1.41 0.00 0.00 2.90 0.00 0.00 0.00 0.00 1.64 2.00 1.39 2.60 3.45 5.93 3.28 1.22 3.43 7.62 1.59 1.33 3.03 3.64 2.17 0.00 2.56 0.87 1.97 2.30 1.65 0.00 1.56 1.82 1.23 2.78 2.26 0.00 0.00 1.98 2.00 2.26 3.60 1.03 0.00 0.00 0.73 1.63 0.00 K alternative_donor E2f,I_chr3R_17452573_17458606,R_chr3R_17452574_17485937,CG6353 chr3R - chr3R_17452573_17458645 chr3R_17452573_17457854 chr3R_17452474_17452572;chr3R_17458646_17458706 83.33 84.00 88.75 87.57 79.63 85.92 86.31 82.45 83.13 97.30 92.00 87.26 87.88 82.35 85.11 86.71 86.36 82.72 81.67 79.62 89.47 65.33 81.31 89.86 90.57 83.16 82.09 77.78 88.75 72.09 85.57 86.54 79.03 82.42 81.08 94.52 94.55 82.61 85.71 89.38 79.76 88.07 89.66 89.23 83.33 79.05 82.61 84.71 81.59 86.11 82.95 81.67 81.82 73.91 85.83 81.63 79.49 81.91 K intron_retention mrj,RI_chr2R_12093733_12108627,I_chr2R_12108697_12109174 chr2R - chr2R_12092537_12093214 chr2R_12092536_12092537;chr2R_12093214_12093215 chr2R_12092330_12092536;chr2R_12093215_12093324 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 2.88 0.00 3.08 0.00 1.32 0.00 5.56 3.37 1.98 0.00 0.00 1.67 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.80 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 1.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG11739,RI_chr3R_205772_205830,I_chr3R_207254_207600 chr3R + chr3R_205768_205830 chr3R_205772_205830 chr3R_205831_205930;chr3R_205672_205767 1.41 1.09 1.11 1.92 1.15 0.00 1.18 0.59 1.90 0.00 0.00 2.22 1.33 0.00 0.97 0.97 2.30 1.22 1.32 1.03 1.45 2.27 2.50 2.50 0.00 1.79 1.35 3.45 10.26 2.38 6.06 2.13 3.77 0.00 0.00 1.79 0.00 1.43 2.11 3.66 2.27 1.38 2.86 0.00 0.00 1.41 1.33 2.38 0.65 2.94 1.23 1.85 2.22 1.18 1.83 1.08 2.21 3.90 K jcn_only_AD CG9797 chr3R - chr3R_4555824_4556254 chr3R_4555824_4556088 chr3R_4555512_4555823;chr3R_4556255_4556334 100.00 100.00 100.00 99.00 100.00 100.00 100.00 98.41 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.80 100.00 97.96 98.59 100.00 100.00 90.16 100.00 100.00 100.00 97.33 100.00 100.00 100.00 100.00 98.68 98.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.84 N alternative_donor CycG,I_chr3R_27425071_27425214,RE_chr3R_27427953_27436598 chr3R - chr3R_27425071_27426110 chr3R_27425071_27425968 chr3R_27424971_27425070;chr3R_27426111_27426325 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.14 0.07 0.00 0.00 0.26 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.40 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.17 0.00 0.00 0.00 0.16 0.00 0.00 0.10 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10907 chr3L + chr3L_11787277_11787453 chr3L_11787276_11787277;chr3L_11787453_11787454 chr3L_11786670_11787276;chr3L_11787454_11787837 6.25 NA NA 0.00 NA NA 0.00 NA 7.14 NA NA NA NA NA NA NA NA NA NA 6.25 NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG6686 chr2L - chr2L_11987513_11987695;chr2L_11987495_11987695 chr2L_11987388_11987695 chr2L_11987696_11988035 94.23 93.81 91.78 87.69 100.00 95.38 98.15 95.24 94.56 92.06 98.59 94.53 95.83 95.24 99.08 98.68 98.08 92.86 84.78 95.39 92.98 77.38 92.45 93.84 88.51 84.91 97.06 98.30 91.72 91.51 87.76 94.34 83.91 94.23 96.83 92.86 94.26 95.77 95.51 92.95 94.67 95.15 95.38 93.62 83.82 94.20 95.24 88.12 94.44 92.44 92.72 97.20 97.33 94.44 91.86 91.74 90.00 88.24 K jcn_only_AA ATPCL,RFI_chr2R_11883823_11884399,I_chr2R_11887476_11888411 chr2R - chr2R_11883820_11884399 chr2R_11883871_11884399 chr2R_11884400_11884499;chr2R_11883723_11883819 100.00 100.00 99.35 100.00 100.00 99.37 99.31 100.00 100.00 100.00 99.30 100.00 100.00 99.11 100.00 100.00 100.00 100.00 100.00 100.00 99.39 99.73 99.68 100.00 100.00 99.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.78 100.00 100.00 100.00 100.00 99.14 100.00 100.00 100.00 99.60 100.00 99.34 99.10 99.32 100.00 100.00 100.00 K jcn_only_AA CG32202 chr3L + chr3L_18675478_18675538 chr3L_18675478_18675524 chr3L_18675302_18675477;chr3L_18675539_18675973 0.59 NA 0.00 0.00 NA 0.00 0.00 7.27 1.89 NA 4.35 0.00 NA 7.14 11.11 4.35 NA 0.00 0.00 1.18 0.00 7.14 5.71 4.17 NA 0.00 NA NA 4.76 0.00 0.00 10.71 18.18 0.00 4.76 NA NA 0.00 0.00 0.00 0.00 2.50 0.00 0.00 3.45 2.08 0.00 0.00 2.13 5.71 6.67 NA 0.00 0.00 0.00 8.70 2.78 2.22 K alternative_acceptor CG6656,RI_chr3R_17701533_17702073,CG33092 chr3R + chr3R_17701533_17702073 chr3R_17701533_17702069 chr3R_17701437_17701532;chr3R_17702074_17702162 97.34 100.00 100.00 100.00 100.00 96.67 100.00 100.00 98.75 93.33 95.24 98.11 100.00 95.65 97.30 100.00 100.00 97.30 96.67 98.91 95.65 97.30 95.65 100.00 93.33 100.00 100.00 95.45 91.67 100.00 97.56 95.65 97.30 97.83 100.00 NA 98.57 95.45 94.52 96.67 93.33 98.51 100.00 90.91 93.10 100.00 97.62 96.00 100.00 96.67 100.00 94.12 94.44 96.43 97.37 96.00 98.51 96.43 K mutually_exclusive CG9171,I_chr2L_5771210_5773014,RI_chr2L_5792418_5799117,I_chr2L_5799412_5800043 chr2L - chr2L_5771210_5799117,chr2L_5799278_5800043 chr2L_5771210_5787964,chr2L_5787985_5800043 chr2L_5799118_5799277 chr2L_5787965_5787984 chr2L_5771110_5771209;chr2L_5800044_5800143 0.00 NA NA NA NA NA 0.00 0.00 33.33 NA NA 0.00 NA NA 0.00 NA NA 0.00 NA 14.29 NA 0.00 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA 12.50 0.00 NA NA NA NA NA 22.22 NA NA NA NA NA NA NA NA NA K alternative_acceptor e(y)3,I_chrX_19526957_19527002 chrX - chrX_19526939_19527002 chrX_19526957_19527002 chrX_19527003_19527102;chrX_19526857_19526938 0.00 0.00 0.00 2.38 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.81 0.00 0.00 2.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 1.41 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Axn,I_chr3R_25849563_25849626 chr3R + chr3R_25859466_25859544 chr3R_25859466_25859526 chr3R_25859321_25859465;chr3R_25859545_25859847 32.50 31.11 34.78 33.33 26.67 25.58 43.59 40.00 29.23 21.95 43.33 32.43 34.29 41.18 34.21 30.23 36.00 29.27 35.29 35.63 30.00 30.77 27.03 30.77 21.82 16.67 40.74 44.12 34.78 30.00 23.53 35.29 29.17 25.45 31.82 42.11 32.50 45.45 28.99 28.71 18.75 35.94 31.43 31.48 30.56 33.33 26.42 33.33 44.44 32.65 41.07 41.18 38.10 33.33 23.40 34.29 34.38 24.44 K intron_retention RI_chrX_1954878_1955077,CG4281,CG14054,I_chrX_1962457_1964222 chrX - chrX_1958522_1958579 chrX_1958521_1958522;chrX_1958579_1958580 chrX_1957450_1958521;chrX_1958580_1958853 0.00 0.00 0.00 6.45 0.00 0.00 2.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 2.23 1.95 0.00 1.98 1.52 1.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 4.76 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.50 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 K alternative_acceptor Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4847655_4848167;chrX_4847655_4847757 chrX_4847655_4848149 chrX_4847526_4847654;chrX_4848168_4848168 70.37 75.00 64.71 76.19 61.11 64.71 57.14 73.91 58.33 65.00 66.67 65.22 25.00 73.33 70.59 71.43 77.78 71.43 73.33 78.12 73.33 69.57 66.67 65.62 72.22 88.89 83.33 91.67 86.67 66.67 70.37 64.29 73.33 67.74 75.00 82.35 65.79 69.57 60.61 80.00 73.68 70.37 80.00 64.29 72.22 69.57 62.96 63.64 73.91 68.00 63.64 85.00 66.67 77.78 76.92 69.23 64.71 65.22 N intron_retention CG42354,CG42353 chrX - chrX_15989430_15989490 chrX_15989429_15989430;chrX_15989490_15989491 chrX_15989002_15989429;chrX_15989491_15989723 0.00 NA NA 4.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA NA NA 0.00 NA NA NA 0.00 NA 0.00 NA NA NA NA 11.11 25.00 15.79 NA 0.00 NA 0.00 4.17 NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K jcn_only_AA Syb chr2R - chr2R_6138650_6139432 chr2R_6138719_6139432 chr2R_6139433_6139489;chr2R_6138448_6138649 26.85 21.95 21.78 32.89 23.53 25.13 26.89 32.00 25.16 22.66 24.70 26.16 24.06 21.59 22.47 29.42 23.93 20.49 26.85 29.50 21.36 33.05 24.84 28.32 29.97 24.81 32.02 41.31 31.29 27.83 23.52 33.33 32.66 28.92 28.60 19.10 18.23 25.20 26.28 32.28 29.67 30.48 21.04 23.82 33.27 32.70 26.71 40.99 28.73 26.21 29.61 29.70 26.75 28.33 19.91 22.52 27.31 40.43 K alternative_donor CG6724 chr2L - chr2L_10768891_10768953 chr2L_10768891_10768947 chr2L_10768644_10768890;chr2L_10768954_10769614 100.00 97.67 97.44 98.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.72 100.00 100.00 100.00 100.00 100.00 97.30 96.97 100.00 100.00 100.00 98.15 100.00 95.24 100.00 97.87 100.00 100.00 100.00 100.00 98.33 98.97 100.00 97.37 96.77 98.51 100.00 98.39 98.44 98.08 100.00 100.00 97.96 98.72 98.46 100.00 98.44 100.00 100.00 98.04 100.00 98.18 100.00 97.73 100.00 100.00 99.27 K intron_retention CG12428,I_chr3R_23531574_23532266 chr3R - chr3R_23531574_23531981 chr3R_23531573_23531574;chr3R_23531981_23531982 chr3R_23531474_23531573;chr3R_23531982_23531987 12.50 NA NA NA NA NA 13.33 NA 7.69 NA NA NA NA NA NA NA NA NA NA 0.00 NA 26.32 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA K intron_retention poe chr2L - chr2L_8056254_8056308 chr2L_8056253_8056254;chr2L_8056308_8056309 chr2L_8054657_8056253;chr2L_8056309_8058244 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1443 chr3R - chr3R_24821097_24821187 chr3R_24821096_24821097;chr3R_24821187_24821188 chr3R_24820984_24821096;chr3R_24821188_24821240 31.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 31.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,EF_chr2R_15349994_15351814,F_chr2R_15349994_15351846,noncoding_8037,FI_chr2R_15350149_15351814,I_chr2R_15350437_15351814,I_chr2R_15350437_15351825,I_chr2R_15350905_15351814,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15350149_15351814;chr2R_15350905_15351814;chr2R_15350285_15351814 chr2R_15350437_15351814 chr2R_15351815_15351914;chr2R_15350068_15350148 33.33 28.57 37.50 25.00 33.33 30.00 27.78 38.10 22.73 66.67 60.00 42.86 33.33 30.00 16.67 25.00 33.33 33.33 30.00 19.05 28.57 33.33 41.67 36.36 40.00 18.18 57.14 40.00 60.00 36.36 35.71 50.00 28.57 36.36 57.14 21.43 60.00 66.67 20.00 28.57 33.33 35.29 50.00 33.33 NA 50.00 40.00 37.50 40.74 16.67 42.86 33.33 20.00 25.00 21.43 33.33 28.57 40.00 K intron_retention Fer1HCH,I_chr3R_26212319_26213496,I_chr3R_26212319_26212460,I_chr3R_26212834_26213185,I_chr3R_26213132_26213185 chr3R - chr3R_26212319_26213185 chr3R_26212318_26212319;chr3R_26213185_26213186 chr3R_26212219_26212318;chr3R_26213186_26213272 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.07 0.00 0.25 0.00 0.08 0.00 0.00 0.11 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.07 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2387583;chrX_2387710_2388436;chrX_2388671_2389073;chrX_2389272_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2395659 chrX_2387584_2387709;chrX_2388437_2388670;chrX_2389074_2389271;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2395660_2395759 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.75 0.59 0.00 0.00 3.26 0.00 1.72 1.11 0.00 0.00 0.00 1.22 0.99 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 1.01 0.76 0.00 0.00 1.12 0.00 1.25 0.99 0.00 0.73 0.00 1.39 0.00 0.00 NA 0.78 0.56 0.00 0.00 0.00 0.00 NA 1.02 0.00 0.00 0.00 K jcn_only_AA CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2815768_2816013;chr2R_2815657_2816013 chr2R_2815654_2816013 chr2R_2816014_2816113;chr2R_2815599_2815653 17.91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.83 NA NA NA NA NA NA NA NA NA NA NA NA 15.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG8312 chr3R + chr3R_5448140_5448194 chr3R_5448140_5448191 chr3R_5448075_5448139;chr3R_5448195_5448263 35.48 36.99 32.26 38.82 22.64 37.88 35.82 44.71 37.50 38.10 36.67 30.97 47.06 48.57 32.93 30.36 32.35 32.39 35.71 31.76 44.83 35.77 45.56 33.72 36.36 31.71 28.40 37.50 33.96 40.79 29.58 31.37 32.63 42.27 46.38 42.86 34.59 36.25 40.74 35.48 37.50 31.16 35.19 36.84 27.78 32.39 37.04 46.99 31.62 42.42 31.13 44.44 28.77 26.04 33.82 27.42 34.31 35.29 K alternative_donor CG1458,I_chr3R_25048492_25048616 chr3R - chr3R_25048492_25048964 chr3R_25048492_25048616 chr3R_25048392_25048491;chr3R_25048965_25049121 1.19 0.65 0.93 1.92 1.67 1.98 1.22 1.59 1.95 0.00 2.44 1.25 1.67 1.14 0.93 2.38 2.08 1.12 3.23 1.43 1.37 1.75 0.98 0.70 0.00 1.15 1.03 1.18 1.19 1.61 3.26 1.23 0.99 2.40 0.93 0.00 0.81 0.00 0.49 1.83 1.27 1.04 1.47 0.85 1.53 1.63 1.06 1.19 2.27 2.22 1.44 0.90 0.89 0.76 1.12 0.65 1.10 2.02 K alternative_donor lin chr2R + chr2R_4802513_4802569;chr2R_4802505_4802569 chr2R_4802509_4802569 chr2R_4802570_4805741;chr2R_4802033_4802504 3.57 0.00 0.00 6.67 11.11 0.00 0.00 6.25 3.45 11.11 9.09 7.41 0.00 8.33 5.88 0.00 11.11 11.11 0.00 2.94 14.29 0.00 0.00 4.00 5.00 7.69 3.57 0.00 0.00 4.76 0.00 0.00 7.41 4.35 5.88 12.50 3.57 4.35 7.89 9.68 0.00 6.67 0.00 5.26 0.00 22.73 0.00 7.14 9.52 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Dgkepsilon chr2R + chr2R_8646849_8646903 chr2R_8646848_8646849;chr2R_8646903_8646904 chr2R_8646561_8646848;chr2R_8646904_8647226 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor RI_chr3L_3803455_3805820,CG10855,I_chr3L_3804765_3804877 chr3L - chr3L_3804751_3805820 chr3L_3804765_3805820 chr3L_3805821_3805920;chr3L_3804665_3804750 100.00 NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA N multi_cassette CG1161,RI_chr3R_1181273_1181459,I_chr3R_1182079_1182146 chr3R + chr3R_1181273_1182146 chr3R_1181273_1181555;chr3R_1181665_1181724;chr3R_1181851_1181899;chr3R_1181959_1182146 chr3R_1181556_1181664;chr3R_1181725_1181850;chr3R_1181900_1181958 chr3R_1181173_1181272;chr3R_1182147_1182246 100.00 100.00 100.00 100.00 100.00 100.00 86.67 100.00 92.13 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.33 100.00 90.00 85.25 87.10 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 67.95 100.00 100.00 100.00 100.00 100.00 100.00 89.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 86.27 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD slgA,I_chrX_21253735_21253820 chrX + chrX_21245849_21247146;chrX_21245487_21247146 chrX_21245768_21247146 chrX_21247147_21247693;chrX_21245405_21245486 28.93 NA NA NA NA NA NA 15.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 42.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG33232,I_chr3L_2484838_2495010,CG1146 chr3L + chr3L_2490848_2490979 chr3L_2490847_2490848;chr3L_2490979_2490980 chr3L_2490798_2490847;chr3L_2490980_2492250 78.57 NA NA 81.82 NA NA 78.57 90.00 60.00 NA NA 90.00 NA NA NA 87.50 NA NA NA NA NA 50.00 NA NA NA NA NA 80.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 63.64 NA 63.64 NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA K alternative_donor Mtch,RI_chr3L_184729_185366,I_chr3L_185367_185925 chr3L + chr3L_184670_184774 chr3L_184682_184774 chr3L_184775_185000;chr3L_184665_184669 44.44 NA 53.33 46.67 NA 25.00 50.00 41.67 64.00 NA 46.15 50.00 40.00 44.44 47.06 53.33 NA 41.67 35.71 38.46 NA NA NA NA NA 35.71 NA NA NA NA 36.36 35.71 27.27 60.00 NA NA NA NA NA 30.43 NA 48.28 75.00 NA 43.75 41.67 NA 40.00 47.62 NA NA NA NA NA 57.89 NA NA 45.45 K alternative_donor Pk61C,CE_chr3L_129889_141769,I_chr3L_132531_133824,I_chr3L_133962_134014 chr3L + chr3L_129889_135457 chr3L_129909_135457 chr3L_135458_135842;chr3L_129840_129888 0.00 0.00 0.00 0.00 2.44 0.00 1.67 1.23 1.75 0.00 0.00 1.54 0.00 0.00 1.67 0.00 0.00 2.78 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 3.23 0.00 0.00 0.00 0.93 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 2.50 0.00 0.00 0.00 0.00 0.00 1.27 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 K multi_cassette Jupiter,I_chr3R_7417030_7419354,I_chr3R_7418347_7445425,RE_chr3R_7419487_7429863,I_chr3R_7429934_7430307,I_chr3R_7429962_7445425,I_chr3R_7430006_7445425,RI_chr3R_7442748_7445425,RI_chr3R_7442793_7445425 chr3R - chr3R_7418347_7445425 chr3R_7418347_7419043;chr3R_7419077_7419354;chr3R_7419489_7445425 chr3R_7419044_7419076;chr3R_7419355_7419488 chr3R_7418247_7418346;chr3R_7445426_7445525 99.35 98.00 100.00 99.36 100.00 100.00 95.29 99.03 100.00 99.08 100.00 100.00 100.00 100.00 98.86 100.00 98.41 100.00 100.00 100.00 100.00 97.66 100.00 98.51 94.69 97.37 98.31 94.92 98.95 100.00 100.00 100.00 98.67 100.00 99.26 99.16 99.07 98.23 99.29 98.80 99.60 99.44 100.00 100.00 99.37 99.35 99.06 99.68 99.37 99.28 99.15 98.55 98.82 98.95 98.91 100.00 99.01 99.63 K intron_retention l(1)G0156 chrX - chrX_19413865_19413936 chrX_19413864_19413865;chrX_19413936_19413937 chrX_19413729_19413864;chrX_19413937_19414331 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG8079 chr2R + chr2R_11109071_11109232 chr2R_11109071_11109132 chr2R_11108939_11109070;chr2R_11109233_11109322 6.67 10.53 NA 0.00 NA 0.00 19.05 7.69 10.00 NA 0.00 11.11 6.67 14.29 0.00 4.00 NA 0.00 NA 4.08 NA NA 3.45 8.70 16.67 NA 0.00 NA NA NA 9.68 NA NA 4.00 0.00 0.00 8.33 6.25 15.00 9.09 NA 15.00 NA 0.00 NA 7.69 7.69 NA 6.25 6.67 4.35 12.50 NA 0.00 8.33 NA NA NA K alternative_acceptor Hsc70Cb chr3L + chr3L_14030212_14030580 chr3L_14030212_14030577 chr3L_14030158_14030211;chr3L_14030581_14030850 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD RpS18,CG8908,EI_chr2R_16151918_16151997,I_chr2R_16151918_16152036,I_chr2R_16151938_16152065,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16151938_16151997;chr2R_16151942_16151997 chr2R_16151918_16151997 chr2R_16151998_16152066;chr2R_16151852_16151917 0.07 0.08 0.10 0.07 0.05 0.11 0.06 0.09 0.07 0.06 0.11 0.09 0.11 0.07 0.06 0.16 0.13 0.10 0.05 0.09 0.11 0.14 0.07 0.08 0.07 0.11 0.04 0.06 0.07 0.04 0.14 0.04 0.07 0.09 0.07 0.10 0.08 0.07 0.06 0.05 0.06 0.05 0.11 0.04 0.02 0.09 0.03 0.05 0.08 0.03 0.06 0.05 0.07 0.06 0.10 0.07 0.02 0.04 K alternative_acceptor Gnf1,I_chr3R_749200_749265 chr3R + chr3R_733842_733969 chr3R_733842_733903 chr3R_732511_733841;chr3R_733970_734812 0.00 1.67 1.25 0.00 0.00 0.00 3.03 0.00 0.85 0.00 0.00 0.00 2.13 1.72 0.00 1.00 0.00 2.00 1.61 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 1.09 0.00 0.00 0.00 1.72 0.00 0.00 1.23 0.88 1.85 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG3011,I_chrX_5808514_5808613 chrX - chrX_5808437_5808613 chrX_5808514_5808613 chrX_5808614_5808683;chrX_5808420_5808436 1.64 1.76 2.21 1.46 0.69 0.92 4.60 1.67 1.34 0.66 0.98 1.26 6.90 1.05 0.62 1.05 1.04 0.84 2.88 2.59 0.00 3.81 2.10 2.40 2.73 4.35 2.20 1.26 2.67 3.12 1.48 3.25 3.82 1.09 3.96 7.53 1.53 0.88 1.87 1.90 2.56 1.19 0.00 0.85 2.87 2.14 1.83 3.41 1.38 2.15 1.64 0.82 1.08 1.97 0.67 1.45 1.00 1.47 K intron_retention sba,I_chr3R_19721149_19722571 chr3R - chr3R_19721149_19722784 chr3R_19721148_19721149;chr3R_19722784_19722785 chr3R_19721049_19721148;chr3R_19722785_19722913 100.00 100.00 95.65 95.83 93.75 94.74 100.00 95.65 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 96.77 100.00 100.00 100.00 100.00 97.62 100.00 95.65 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 96.55 K alternative_acceptor lkb1 chr3R + chr3R_9504789_9504872;chr3R_9504789_9504862 chr3R_9504789_9504847 chr3R_9504472_9504788;chr3R_9504873_9505152 57.14 47.83 62.50 67.74 54.55 58.33 50.00 50.00 65.71 50.00 50.00 59.38 56.25 46.67 52.38 54.17 60.00 50.00 55.56 57.14 88.89 65.00 NA 50.00 50.00 55.00 55.00 60.00 52.63 57.14 62.50 52.94 60.00 46.15 61.54 NA 62.50 60.00 57.89 64.52 47.06 57.69 NA 50.00 48.00 67.57 60.87 57.14 51.43 55.00 55.00 NA NA 64.00 NA 62.50 58.33 66.67 K alternative_acceptor Ucrh,CREFI_chr3LHet_606442_607073 chr3LHet + chr3LHet_606442_607073 chr3LHet_606442_606499 chr3LHet_606350_606441;chr3LHet_607074_607088 98.60 99.02 98.88 98.97 100.00 97.67 97.52 98.38 98.47 100.00 100.00 94.61 100.00 96.46 98.04 98.60 100.00 100.00 100.00 99.38 100.00 86.67 96.15 98.89 93.33 89.13 99.07 98.21 91.67 100.00 99.33 95.38 96.77 97.86 98.73 98.61 100.00 100.00 97.37 100.00 96.72 97.91 97.12 96.77 97.62 98.63 99.14 97.37 97.80 99.17 98.89 98.63 97.78 99.12 98.39 98.47 99.08 98.31 K intron_retention msn,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2563960_2564396 chr3L_2563959_2563960;chr3L_2564396_2564397 chr3L_2563818_2563959;chr3L_2564397_2564692 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.85 0.99 0.94 0.48 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Cctgamma chr3R + chr3R_12473772_12473856 chr3R_12473771_12473772;chr3R_12473856_12473857 chr3R_12473710_12473771;chr3R_12473857_12474356 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.19 0.31 0.19 0.00 0.00 0.96 0.98 0.33 0.20 0.31 0.27 0.13 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.25 0.00 0.00 0.00 K intron_retention RpL28,RI_chr3L_3221710_3221877,snoRNA:Me28S-C3351 chr3L - chr3L_3221710_3221877 chr3L_3221709_3221710;chr3L_3221877_3221878 chr3L_3221610_3221709;chr3L_3221878_3221977 33.34 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 63.64 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA K alternative_acceptor mod(r),I_chrX_515823_515874,RI_chrX_515831_515923,I_chrX_516392_517480 chrX + chrX_515831_515874;chrX_515831_515885 chrX_515831_515923 chrX_515763_515830;chrX_515924_515974 4.76 6.67 0.00 5.26 0.00 7.14 5.56 4.76 10.34 0.00 7.69 0.00 8.33 0.00 0.00 4.55 0.00 0.00 20.00 0.00 7.14 9.09 0.00 0.00 10.00 7.14 0.00 0.00 0.00 11.11 13.64 0.00 0.00 4.76 9.09 20.00 5.88 0.00 6.25 0.00 14.29 4.00 0.00 5.88 27.27 0.00 5.88 12.50 0.00 0.00 10.53 9.09 0.00 0.00 5.88 0.00 6.67 7.14 K intron_retention CG8202 chr3R + chr3R_4560474_4560531 chr3R_4560473_4560474;chr3R_4560531_4560532 chr3R_4560142_4560473;chr3R_4560532_4560840 0.00 0.00 0.00 2.22 0.00 0.00 0.00 2.38 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K intron_retention l(3)82Fd,I_chr3R_1125296_1161435,I_chr3R_1125296_1175189,I_chr3R_1129905_1148709,I_chr3R_1129905_1160126,I_chr3R_1131576_1133656,I_chr3R_1131693_1133665,I_chr3R_1147660_1148709 chr3R - chr3R_1131693_1133665 chr3R_1131692_1131693;chr3R_1133665_1133666 chr3R_1131626_1131692;chr3R_1133666_1133756 20.00 NA NA NA NA NA NA 35.29 36.36 NA NA 7.14 20.00 NA NA 41.67 NA NA 28.57 5.56 NA NA NA NA NA NA NA NA NA NA 16.67 NA NA 15.38 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA 27.78 NA NA NA NA NA NA NA NA NA K intron_retention RI_chr2L_22735482_22741701,CG17715,I_chr2L_22737141_22741701,I_chr2L_22742106_22746918 chr2L + chr2L_22737141_22737199 chr2L_22737140_22737141;chr2L_22737199_22737200 chr2L_22737072_22737140;chr2L_22737200_22737268 38.03 42.03 46.15 37.38 41.18 46.15 18.18 42.50 42.14 30.30 33.33 38.03 32.65 32.50 39.76 36.31 32.88 50.68 40.18 44.78 50.98 19.57 46.67 34.18 45.65 46.67 40.00 31.03 80.95 29.31 35.97 32.14 43.33 40.12 34.48 41.46 24.62 37.10 41.51 37.70 40.00 38.97 37.97 25.45 39.13 34.29 25.93 60.61 43.89 33.72 36.79 25.58 48.65 33.33 43.16 28.38 23.81 44.19 K jcn_only_AA CG9904 chrX + chrX_2515346_2515418 chrX_2515346_2515411 chrX_2514858_2515345;chrX_2515419_2516173 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG9855,RI_chr3R_222522_222581,RI_chr3R_222525_222604,I_chr3R_223384_223429 chr3R - chr3R_222525_222604 chr3R_222525_222581 chr3R_222457_222524;chr3R_222605_222650 100.00 96.15 100.00 97.67 100.00 95.45 100.00 100.00 97.96 100.00 100.00 100.00 94.44 100.00 96.55 96.88 100.00 100.00 100.00 100.00 100.00 98.11 100.00 100.00 90.91 100.00 97.06 100.00 97.83 100.00 100.00 97.50 98.18 97.06 95.45 100.00 96.77 96.30 100.00 98.59 100.00 98.00 100.00 100.00 100.00 100.00 95.24 98.92 97.73 100.00 100.00 95.24 97.06 100.00 100.00 97.06 100.00 98.84 K intron_retention sar1,I_chr3R_18185148_18185246 chr3R + chr3R_18183394_18184093 chr3R_18183393_18183394;chr3R_18184093_18184094 chr3R_18183253_18183393;chr3R_18184094_18184213 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.58 0.62 0.00 0.00 0.00 0.00 1.75 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.32 0.00 0.00 K cassette cv-c,RI_chr3R_10258928_10265129,RI_chr3R_10301040_10306363,RI_chr3R_10306635_10307255 chr3R - chr3R_10221749_10233875 chr3R_10221749_10225440;chr3R_10225513_10233875 chr3R_10225441_10225512 chr3R_10221597_10221748;chr3R_10233876_10233917 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 98.59 100.00 100.00 98.25 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 91.67 100.00 100.00 100.00 95.24 100.00 100.00 96.30 98.36 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CaMKI,I_chr4_466377_467256,I_chr4_466377_467726,I_chr4_467072_467446,I_chr4_467378_467424,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_466912_467256;chr4_467113_467256;chr4_466858_467256;chr4_466798_467256;chr4_466896_467256 chr4_466816_467256 chr4_467257_467272;chr4_466792_466797 0.00 0.00 0.00 10.00 NA 0.00 7.69 0.00 7.14 NA NA 0.00 0.00 0.00 0.00 0.00 33.33 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA NA NA K intron_retention rad50,ppk12 chr2R + chr2R_18311940_18311996 chr2R_18311939_18311940;chr2R_18311996_18311997 chr2R_18311837_18311939;chr2R_18311997_18312977 0.00 0.00 0.00 0.00 NA NA 1.69 0.00 3.64 NA 0.00 0.00 0.00 0.00 0.00 3.45 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 N intron_retention CG17184 chr3R - chr3R_7059293_7059355 chr3R_7059292_7059293;chr3R_7059355_7059356 chr3R_7059124_7059292;chr3R_7059356_7059373 39.13 NA NA NA NA NA NA 39.13 34.38 NA NA NA NA NA 28.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 41.18 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG17665 chr2R - chr2R_123842_123917 chr2R_123868_123917 chr2R_123918_124062;chr2R_123742_123841 92.86 89.47 92.31 91.89 100.00 91.67 90.00 91.43 95.00 NA 92.86 96.15 94.44 100.00 95.45 96.43 95.24 80.95 88.46 96.30 100.00 90.91 95.24 85.71 93.33 100.00 88.89 92.86 90.00 100.00 95.65 88.89 NA 97.14 100.00 88.24 95.24 90.91 91.67 95.83 100.00 85.71 94.12 95.00 90.00 92.31 89.47 100.00 90.32 84.21 81.48 100.00 90.91 87.50 90.91 95.00 87.10 100.00 K jcn_only_AA CG7971,I_chr3L_1659363_1659845,I_chr3L_1667736_1667806 chr3L - chr3L_1659991_1661108 chr3L_1660858_1661108 chr3L_1661109_1661165;chr3L_1659846_1659990 1.81 1.41 1.54 0.91 2.50 3.77 3.45 4.35 0.78 0.00 0.00 3.06 2.04 4.65 1.47 3.80 2.94 4.35 3.39 1.05 0.00 0.00 0.85 1.80 2.04 4.65 3.39 5.56 1.82 0.00 0.00 2.33 0.39 1.08 0.00 2.67 3.06 0.00 0.00 2.13 7.25 0.68 NA 0.96 1.90 2.54 1.23 0.86 0.00 10.87 0.00 1.92 0.00 2.04 1.18 1.82 5.26 1.21 N intron_retention CG2765,RI_chr2R_20849027_20852094,E_chr2R_20849271_20852090,E_chr2R_20851190_20852094 chr2R - chr2R_20851822_20852094 chr2R_20851821_20851822;chr2R_20852094_20852095 chr2R_20851782_20851821;chr2R_20852095_20852190 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 86.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 57.78 100.00 83.52 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.35 100.00 100.00 NA 100.00 100.00 100.00 82.35 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor sbb,I_chr2R_14193641_14243004,noncoding_7736,RI_chr2R_14243561_14244282,I_chr2R_14243561_14244715 chr2R - chr2R_14243561_14244642;chr2R_14243561_14244596 chr2R_14243561_14244715 chr2R_14243461_14243560;chr2R_14244716_14244766 12.50 NA 12.50 14.29 NA NA 9.09 5.56 24.14 NA NA 17.65 7.69 10.00 NA 9.09 33.33 14.29 10.00 20.00 NA 11.11 28.57 NA NA 16.67 NA NA NA NA 0.00 NA NA 11.76 NA NA NA NA NA NA NA 25.00 12.50 NA NA NA NA NA 23.53 NA NA 14.29 NA NA 0.00 NA 0.00 NA K alternative_acceptor CG13090 chr2L + chr2L_8517581_8517662 chr2L_8517581_8517659 chr2L_8517446_8517580;chr2L_8517663_8519162 91.67 NA 100.00 92.86 90.91 87.50 100.00 94.12 96.00 NA 84.62 94.74 88.89 100.00 85.71 90.91 88.89 90.91 92.86 92.00 NA NA NA 85.71 NA 93.33 NA 87.50 100.00 NA 100.00 85.71 100.00 89.47 NA NA 71.43 NA NA 91.30 NA 100.00 NA 85.71 NA 85.71 NA 100.00 93.75 66.67 NA NA NA NA 92.86 NA NA 91.67 K jcn_only_AD debcl,I_chr2R_2539027_2539493 chr2R + chr2R_2539636_2539692 chr2R_2539638_2539692 chr2R_2539693_2540353;chr2R_2539494_2539635 96.14 92.86 97.89 95.79 98.53 97.24 95.45 97.22 96.41 94.00 95.45 98.90 98.33 97.10 95.73 98.73 98.51 98.02 94.25 98.01 95.88 94.57 96.59 96.93 97.92 100.00 96.43 94.59 94.84 94.62 93.90 95.39 96.91 95.12 96.43 94.31 97.46 98.00 95.72 94.39 97.88 98.61 91.25 98.11 96.14 96.67 99.36 97.44 93.56 94.24 95.95 98.75 92.75 93.84 93.86 95.97 94.71 94.98 K jcn_only_AD Npc1a chr2L - chr2L_10218890_10220868;chr2L_10218890_10220796;chr2L_10218890_10220834 chr2L_10218890_10220692 chr2L_10218779_10218889;chr2L_10220869_10220873 73.12 76.36 71.21 71.70 79.63 78.95 76.26 74.40 73.94 69.23 73.33 63.44 70.27 82.61 62.71 78.18 80.70 78.00 70.67 52.56 77.78 64.71 60.00 63.27 72.00 72.92 78.26 NA 62.16 70.00 74.19 NA 66.04 77.94 75.00 56.41 48.78 74.07 71.43 80.00 84.00 70.34 73.47 68.92 NA 87.10 54.55 61.43 70.23 NA 75.00 74.42 NA NA 78.95 59.09 NA 82.05 K intron_retention CG3294,RI_chr2L_4795584_4795842 chr2L + chr2L_4795572_4795842 chr2L_4795571_4795572;chr2L_4795842_4795843 chr2L_4795484_4795571;chr2L_4795843_4795942 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 K alternative_donor Lam chr2L + chr2L_5542656_5543324;chr2L_5542864_5543324;chr2L_5542661_5543324 chr2L_5543273_5543324 chr2L_5543325_5543794;chr2L_5542527_5542655 1.92 2.86 0.00 2.08 0.00 3.85 4.00 4.17 3.33 1.92 3.03 1.61 3.57 3.70 2.17 5.71 5.00 0.00 2.78 2.94 0.00 0.93 1.35 1.47 2.27 2.94 2.94 1.67 1.82 2.33 2.86 2.94 1.39 1.69 0.00 0.00 0.00 0.00 2.22 2.34 2.70 1.18 3.03 1.72 0.00 1.67 0.00 1.65 2.35 0.00 1.85 0.00 2.50 0.00 2.70 1.82 0.00 2.90 K multi_cassette ssp4,I_chr2R_13409412_13410357,RI_chr2R_13409412_13411004,I_chr2R_13409412_13411328,I_chr2R_13409412_13411588,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13408434_13411588 chr2R_13408434_13410357;chr2R_13410466_13411004;chr2R_13411077_13411328;chr2R_13411404_13411588 chr2R_13410358_13410465;chr2R_13411005_13411076;chr2R_13411329_13411403 chr2R_13408151_13408433;chr2R_13411589_13411688 12.50 11.11 NA 17.65 7.69 10.00 1.72 27.27 12.00 7.14 6.67 20.00 6.67 11.11 14.29 20.00 25.00 14.29 18.18 40.00 8.33 7.14 15.38 14.29 NA 5.56 18.18 NA 4.76 10.00 16.67 NA 14.29 7.69 25.00 NA 14.29 18.18 6.25 3.45 7.69 13.04 7.69 7.69 22.22 20.00 NA NA 10.00 11.11 15.38 33.33 NA 12.50 7.14 10.00 14.29 28.57 K jcn_only_AD CG32103,I_chr3L_12398261_12403200 chr3L - chr3L_12407187_12407805 chr3L_12407187_12407801 chr3L_12407030_12407186;chr3L_12407806_12407901 35.96 28.57 NA 35.56 NA 20.83 55.00 45.71 25.42 NA 34.78 33.33 NA 30.77 41.38 40.91 39.13 12.50 39.13 40.48 23.81 29.17 40.91 39.29 NA 38.10 31.03 NA NA 28.57 26.32 NA NA 45.00 26.67 23.81 34.78 NA 40.00 28.57 NA 46.43 NA 40.00 NA 43.48 54.55 36.36 35.19 NA 43.24 47.62 25.00 NA 40.74 NA NA 34.62 K jcn_only_AA dwg,RI_chrX_2622297_2622355,RI_chrX_2622297_2622430,RI_chrX_2622435_2622577,RI_chrX_2627170_2627263 chrX + chrX_2622297_2622577;chrX_2622297_2622430 chrX_2622297_2622355 chrX_2622197_2622296;chrX_2622578_2622677 10.00 12.96 4.26 15.22 0.00 4.88 22.22 7.02 13.04 10.81 2.38 8.43 16.67 5.00 6.38 7.27 10.00 16.67 4.44 8.25 18.75 34.21 4.76 21.15 4.55 11.11 11.29 8.16 10.53 21.15 28.57 7.50 17.74 9.43 3.03 5.13 14.71 20.00 8.43 11.25 6.67 11.39 10.00 15.79 10.34 5.13 10.87 1.45 11.54 13.73 16.67 NA 6.00 5.66 9.76 13.21 8.70 3.95 K intron_retention CG33057,mkg-p,Oseg1 chr3L - chr3L_8397151_8397202 chr3L_8397150_8397151;chr3L_8397202_8397203 chr3L_8395407_8397150;chr3L_8397203_8397610 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 6.25 0.00 0.00 0.00 0.00 0.00 13.95 23.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 K intron_retention CG12859 chr2R + chr2R_10644219_10644298 chr2R_10644218_10644219;chr2R_10644298_10644299 chr2R_10644036_10644218;chr2R_10644299_10644636 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 K intron_retention msk,I_chr3L_8109906_8110404 chr3L + chr3L_8110641_8110695 chr3L_8110640_8110641;chr3L_8110695_8110696 chr3L_8110405_8110640;chr3L_8110696_8111193 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7523 chr3R - chr3R_13495349_13495787 chr3R_13495348_13495349;chr3R_13495787_13495788 chr3R_13494947_13495348;chr3R_13495788_13496064 1.34 1.08 0.00 2.80 2.59 2.25 3.33 2.90 1.91 2.33 4.82 2.93 2.33 2.47 0.00 2.88 0.00 0.95 4.35 1.28 2.35 0.00 0.88 1.68 1.98 0.00 1.56 3.55 0.00 1.34 2.47 1.82 2.41 1.40 0.98 0.00 0.74 1.05 0.00 2.07 0.00 1.16 0.00 1.08 0.48 0.47 1.35 0.98 2.11 1.10 2.66 0.00 1.93 0.00 1.79 0.55 1.04 1.09 K alternative_donor Lmpt,RI_chr3L_16884531_16889334,I_chr3L_16904980_16905228 chr3L + chr3L_16858505_16859765;chr3L_16858538_16859765 chr3L_16858527_16859765 chr3L_16859766_16860046;chr3L_16858440_16858504 54.55 NA NA NA NA NA NA NA 50.00 NA NA 40.00 NA NA NA NA NA NA NA 71.43 NA 40.00 54.55 50.00 NA NA NA NA NA NA 57.14 NA NA 50.00 NA NA NA NA NA NA NA NA NA 44.44 NA 55.56 NA 54.55 57.14 NA 75.00 45.45 NA NA NA 83.33 NA NA K jcn_only_AD Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4833364_4834454;chrX_4833234_4834454;chrX_4833308_4834454;chrX_4833338_4834454 chrX_4833203_4834454 chrX_4834455_4834880;chrX_4833197_4833202 2.91 NA 9.09 2.70 0.00 NA 0.00 0.00 4.55 4.17 NA 8.33 0.00 0.00 NA 3.12 3.12 NA 2.50 5.88 NA 27.27 NA NA NA NA NA NA NA 6.45 0.00 NA 5.08 2.27 NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA 0.00 4.44 NA NA NA NA NA 4.76 NA NA NA N alternative_last_exon sta chrX - chrX_1376514_1377290 chrX_1376949_1377290 chrX_1368708_1376513 chrX_1376706_1376948 chrX_1377291_1377379 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.99 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD unc-13,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_924098_924986 chr4_924098_924258 chr4_923998_924097;chr4_924987_925545 26.92 NA NA NA NA NA NA 34.62 NA NA NA 26.92 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 18.18 NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA 13.64 NA NA NA NA NA NA NA NA NA K alternative_donor Ect4,C_chr3L_8091754_8101552,I_chr3L_8091826_8092243,I_chr3L_8098397_8101385,I_chr3L_8098758_8101738,I_chr3L_8100030_8101385 chr3L + chr3L_8100030_8101385 chr3L_8100050_8101385 chr3L_8101386_8101485;chr3L_8099930_8100029 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 98.63 100.00 97.22 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 98.33 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 97.50 93.94 98.51 K cassette CG8671,I_chr2L_21275807_21277205 chr2L + chr2L_21275807_21281131;chr2L_21275807_21279883 chr2L_21275807_21277229;chr2L_21278430_21281131,chr2L_21278430_21279883 chr2L_21277230_21278429 chr2L_21275724_21275806;chr2L_21281132_21281337 11.11 9.62 6.25 7.50 13.64 8.00 12.20 11.76 11.59 21.05 3.57 11.54 6.90 9.38 9.09 6.56 14.29 9.68 10.81 7.69 3.85 11.63 18.00 16.67 16.13 6.98 12.77 10.34 11.54 9.52 13.33 11.11 11.11 12.73 12.50 33.33 23.33 22.73 20.59 5.60 7.69 8.33 15.38 10.00 11.11 15.38 10.81 10.87 12.07 9.26 13.21 13.79 14.29 18.52 8.33 10.81 14.29 9.26 K intron_retention I_chr2L_476332_525391,ush chr2L + chr2L_491359_525391 chr2L_491358_491359;chr2L_525391_525392 chr2L_490856_491358;chr2L_525392_525436 24.24 20.83 28.26 28.79 20.00 30.23 32.73 27.27 26.21 14.71 25.71 26.03 31.91 21.74 33.33 27.54 31.82 27.66 28.30 26.32 16.28 16.33 21.95 20.00 23.40 18.87 29.17 24.24 25.00 20.69 23.40 21.62 13.54 30.59 26.42 26.76 28.12 19.57 20.00 20.00 19.05 25.45 29.79 17.33 17.14 24.59 12.24 23.68 23.53 27.78 22.06 28.89 9.76 14.29 25.40 19.23 18.18 24.59 K jcn_only_AD Sap47 chr3R + chr3R_11779957_11780304 chr3R_11779978_11780304 chr3R_11780305_11780405;chr3R_11779880_11779956 77.11 82.05 70.00 63.27 82.93 92.31 65.38 77.11 74.39 NA 66.67 82.67 70.83 84.21 74.32 75.81 77.78 73.47 82.61 80.90 78.95 86.87 61.76 62.16 56.25 82.98 78.38 58.33 91.18 83.78 84.00 91.38 81.25 78.75 73.17 82.05 67.44 60.71 70.45 74.47 88.89 86.79 72.73 73.33 84.13 82.43 70.37 83.21 85.42 52.00 67.35 NA 79.41 61.90 74.55 66.67 67.74 90.70 K alternative_donor CG6569,RI_chr3R_17693077_17693126,I_chr3R_17694702_17694760 chr3R - chr3R_17692987_17693126 chr3R_17692987_17693059 chr3R_17692977_17692986;chr3R_17693127_17693226 0.00 0.00 NA NA NA NA 0.00 0.00 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA 7.41 NA 3.85 NA NA NA NA NA 0.00 NA NA 2.00 NA NA NA NA NA 0.00 NA 0.00 NA NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA K intron_retention CG5871,NELF-A chr3R + chr3R_17047473_17047531 chr3R_17047472_17047473;chr3R_17047531_17047532 chr3R_17047048_17047472;chr3R_17047532_17048572 0.00 0.00 0.00 10.00 0.00 0.00 7.41 6.06 6.12 NA 0.00 3.92 0.00 0.00 3.45 24.32 0.00 0.00 NA 2.56 0.00 14.29 7.89 0.00 0.00 0.00 3.85 0.00 10.53 0.00 13.33 3.70 0.00 0.00 0.00 0.00 0.00 6.67 0.00 3.77 0.00 5.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.11 4.76 0.00 0.00 0.00 0.00 4.76 2.94 0.00 K intron_retention Adar,I_chrX_1668256_1682696,I_chrX_1674594_1674717 chrX + chrX_1672057_1672644 chrX_1672056_1672057;chrX_1672644_1672645 chrX_1671942_1672056;chrX_1672645_1672732 97.62 NA 100.00 90.00 NA 100.00 100.00 95.24 100.00 NA 73.33 100.00 NA NA 100.00 94.44 91.67 NA 100.00 94.12 83.33 NA 93.33 NA NA NA 100.00 NA NA NA 87.50 NA NA 100.00 NA NA NA NA NA 100.00 NA 93.75 NA NA NA NA NA 85.71 93.75 NA 100.00 NA NA NA 100.00 NA NA NA K intron_retention CG8334,I_chr3L_19870731_19870822 chr3L + chr3L_19873826_19873888 chr3L_19873825_19873826;chr3L_19873888_19873889 chr3L_19873358_19873825;chr3L_19873889_19874167 0.00 0.00 0.00 3.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 K intron_retention Ef1gamma,E_chr3R_25046218_25047549 chr3R + chr3R_25046302_25046364 chr3R_25046301_25046302;chr3R_25046364_25046365 chr3R_25046152_25046301;chr3R_25046365_25046787 0.38 0.11 0.24 0.41 0.31 0.27 0.34 0.25 0.32 0.46 0.14 0.24 0.00 0.16 0.32 0.38 0.00 0.23 0.31 0.43 0.39 5.50 0.43 0.39 0.86 0.41 0.59 1.19 2.51 0.82 0.78 0.71 0.74 0.18 0.62 1.80 0.47 0.19 0.37 0.62 1.68 0.15 0.24 0.46 0.73 0.40 0.32 1.16 0.33 0.52 0.57 0.38 0.25 0.31 0.18 0.32 0.15 0.69 K cassette CG9940 chrX - chrX_13595387_13612161 chrX_13595387_13601628;chrX_13601748_13612161 chrX_13601629_13601747 chrX_13595130_13595386;chrX_13612162_13612298 97.83 100.00 97.22 93.48 100.00 97.30 96.67 100.00 100.00 92.31 86.21 98.18 95.65 96.67 96.88 90.48 95.24 96.55 97.50 100.00 100.00 96.55 98.04 97.30 100.00 100.00 100.00 95.24 96.67 100.00 97.44 96.43 100.00 100.00 100.00 98.00 100.00 100.00 97.78 98.89 97.56 95.00 100.00 97.83 95.45 97.87 96.15 95.00 98.36 100.00 97.83 95.65 100.00 100.00 97.73 100.00 100.00 98.57 K intron_retention CG12024,REI_chr3L_1857404_1857509 chr3L + chr3L_1857404_1857464 chr3L_1857403_1857404;chr3L_1857464_1857465 chr3L_1857304_1857403;chr3L_1857465_1859050 15.79 NA NA NA NA NA NA NA 20.00 NA NA 7.69 NA NA NA NA NA NA NA 19.05 NA 14.29 14.29 12.50 NA NA 20.00 25.00 23.08 15.79 NA 0.00 8.00 NA NA 20.00 4.35 13.33 22.22 17.86 NA 17.65 NA 10.53 0.00 16.67 NA 6.25 36.36 23.53 17.65 14.29 NA NA NA NA NA 11.11 K intron_retention N chrX + chrX_3050498_3053135 chrX_3050497_3050498;chrX_3053135_3053136 chrX_3050293_3050497;chrX_3053136_3053266 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG6509 chr2L - chr2L_11516658_11516728 chr2L_11516658_11516722 chr2L_11516509_11516657;chr2L_11516729_11516801 100.00 NA 100.00 100.00 100.00 100.00 93.33 92.86 100.00 100.00 NA 92.31 90.91 100.00 100.00 100.00 91.67 100.00 100.00 94.12 100.00 100.00 94.44 93.33 100.00 100.00 100.00 100.00 100.00 92.31 85.71 NA 88.89 94.74 100.00 92.31 91.67 100.00 93.75 94.44 NA 90.48 100.00 100.00 NA 75.00 NA 100.00 100.00 NA 95.45 100.00 NA NA 100.00 100.00 NA NA K jcn_only_AD CG11984,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4839215_4840394;chr3R_4839215_4840589 chr3R_4839215_4840474 chr3R_4839038_4839214;chr3R_4840590_4840610 88.93 93.94 70.00 75.56 80.95 90.48 85.71 79.59 82.05 NA 77.14 80.56 69.23 72.73 81.48 93.62 65.22 81.48 89.29 83.64 87.50 93.06 91.67 NA NA 69.70 90.24 90.32 100.00 97.37 91.18 85.00 97.96 70.00 96.00 96.88 93.48 85.00 NA 93.41 96.43 68.12 71.43 100.00 66.67 94.29 93.75 89.47 73.68 85.29 93.75 96.88 96.30 NA 88.57 93.10 85.29 98.36 K alternative_acceptor CG8677 chr2L + chr2L_21226423_21226632 chr2L_21226423_21226629 chr2L_21224696_21226422;chr2L_21226633_21228340 100.00 91.67 100.00 100.00 100.00 97.06 100.00 100.00 97.78 100.00 100.00 97.44 100.00 100.00 100.00 96.43 94.44 95.83 96.43 100.00 90.91 96.00 97.44 100.00 100.00 95.65 100.00 100.00 100.00 100.00 95.24 95.24 96.88 94.29 96.67 95.24 100.00 100.00 95.12 100.00 100.00 98.15 94.74 100.00 100.00 100.00 100.00 96.23 100.00 96.15 100.00 94.12 100.00 100.00 100.00 100.00 90.00 100.00 K jcn_only_AD Rab23,I_chr3R_1508710_1508882 chr3R - chr3R_1508710_1508882;chr3R_1508710_1511119 chr3R_1508710_1510597 chr3R_1508610_1508709;chr3R_1511120_1511186 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor Pp2A-29B,I_chr2L_8367210_8367311,I_chr2L_8369561_8369715 chr2L + chr2L_8366124_8367095 chr2L_8366395_8367095 chr2L_8367096_8367209;chr2L_8366118_8366123 100.00 100.00 100.00 98.15 99.15 100.00 100.00 99.33 99.74 100.00 100.00 99.65 100.00 100.00 99.47 99.71 100.00 99.29 100.00 99.73 100.00 100.00 99.47 100.00 99.08 100.00 99.33 100.00 100.00 100.00 99.11 98.82 100.00 100.00 100.00 100.00 99.24 100.00 98.52 99.50 100.00 99.67 99.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N alternative_donor CG15173,RI_chr2L_19044304_19044369 chr2L - chr2L_19044084_19044153 chr2L_19044084_19044144 chr2L_19043946_19044083;chr2L_19044154_19044303 22.53 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG18749,noncoding_15296,CG33722 chr3R + chr3R_4069864_4069923 chr3R_4069864_4069918 chr3R_4069831_4069863;chr3R_4069924_4070163 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.61 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.31 100.00 100.00 100.00 100.00 100.00 97.30 97.92 NA NA 98.08 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 98.28 NA 100.00 100.00 100.00 100.00 100.00 100.00 98.08 100.00 100.00 NA K intron_retention CG3847 chrX + chrX_6241503_6241558 chrX_6241502_6241503;chrX_6241558_6241559 chrX_6241500_6241502;chrX_6241559_6241564 98.21 98.08 97.87 98.81 97.50 97.56 98.68 98.91 98.20 97.22 97.50 97.67 97.62 98.25 98.08 98.81 97.78 95.24 100.00 100.00 94.74 92.31 100.00 97.78 100.00 98.21 98.48 100.00 98.00 97.67 100.00 97.83 100.00 98.82 100.00 97.96 100.00 100.00 96.30 98.46 97.96 99.06 98.11 100.00 94.12 98.88 98.04 100.00 99.01 96.36 97.96 100.00 100.00 100.00 98.41 97.44 98.48 97.92 K intron_retention Fis1,I_chr2R_1491917_1491981,I_chr2R_1491917_1492087,I_chr2R_1492154_1492214 chr2R - chr2R_1491917_1492021 chr2R_1491916_1491917;chr2R_1492021_1492022 chr2R_1491817_1491916;chr2R_1492022_1492032 37.86 NA NA 27.78 NA NA 30.77 43.75 47.06 NA NA 40.00 NA NA NA 50.00 NA NA 30.77 17.65 NA NA NA NA NA 40.00 35.71 NA NA NA 55.56 NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA 25.00 NA K alternative_acceptor PGRP-LA chr3L + chr3L_9330034_9330097 chr3L_9330034_9330085 chr3L_9329812_9330033;chr3L_9330098_9330321 36.36 33.33 NA 25.00 NA NA NA 36.36 42.86 NA NA NA NA NA NA 41.67 NA NA NA 66.67 NA 40.00 NA 35.71 NA NA NA 41.67 NA NA NA NA NA 45.45 NA NA 26.67 NA 30.77 28.57 NA 31.25 NA NA NA NA 35.71 NA 40.00 NA NA NA 38.46 NA NA 36.36 41.18 NA K alternative_acceptor cals,I_chr4_1136706_1138476,I_chr4_1136881_1136951,I_chr4_1139644_1142084,RI_chr4_1141233_1142084 chr4 - chr4_1136706_1136951 chr4_1136881_1136951 chr4_1136952_1137051;chr4_1136606_1136705 0.00 0.00 0.00 0.00 0.00 0.00 1.25 1.06 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 2.86 NA NA 0.00 0.00 0.00 NA 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K alternative_donor miple2,I_chr3L_274251_274594 chr3L + chr3L_274808_274866 chr3L_274814_274866 chr3L_274867_274969;chr3L_274595_274807 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.86 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 2.56 2.63 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 K intron_retention Sin3A,I_chr2R_8473578_8480185,I_chr2R_8479951_8480185,RI_chr2R_8479951_8480233 chr2R - chr2R_8479951_8480233 chr2R_8479950_8479951;chr2R_8480233_8480234 chr2R_8479851_8479950;chr2R_8480234_8480285 92.59 90.91 100.00 89.47 NA 100.00 94.74 92.59 87.50 NA NA 85.19 92.31 93.33 85.71 93.10 NA 92.86 100.00 95.45 91.67 77.78 93.33 90.91 100.00 94.74 90.00 100.00 88.89 90.00 94.74 NA 100.00 88.24 100.00 NA 88.89 100.00 100.00 95.24 NA 88.46 82.35 88.89 NA NA NA 94.74 91.18 90.00 90.00 100.00 NA NA 93.75 NA NA 91.67 K alternative_donor CG11486,RE_chr3L_3084894_3085203 chr3L + chr3L_3088129_3088191;chr3L_3088139_3088191;chr3L_3088124_3088191 chr3L_3088120_3088191 chr3L_3088192_3088663;chr3L_3087957_3088119 98.97 98.75 97.89 97.73 97.50 100.00 100.00 99.45 98.42 96.97 98.13 99.53 100.00 97.12 96.38 98.55 98.97 99.24 100.00 98.18 100.00 100.00 98.60 99.41 99.08 99.21 98.71 100.00 100.00 100.00 96.85 98.02 100.00 96.81 100.00 98.51 98.14 98.50 98.44 100.00 100.00 97.86 97.85 99.45 99.46 98.34 99.56 100.00 99.13 98.59 98.65 100.00 98.60 100.00 100.00 100.00 97.57 98.19 K alternative_donor RpS23,I_chr2R_10103243_10103455,I_chr2R_10103616_10103938 chr2R - chr2R_10103616_10104034 chr2R_10103616_10103938 chr2R_10103516_10103615;chr2R_10104035_10104038 0.12 0.07 0.05 0.03 0.03 0.02 0.04 0.04 0.04 0.11 0.04 0.05 0.04 0.12 0.05 0.06 0.02 0.02 0.03 0.05 0.06 0.40 0.44 0.15 0.15 0.04 0.24 0.20 0.52 0.79 0.86 0.48 0.22 0.05 1.20 2.06 0.06 0.18 0.13 0.20 0.78 0.05 0.02 0.27 0.24 0.65 0.12 0.69 0.12 0.26 0.46 0.05 0.37 1.90 0.07 0.36 0.08 0.55 K intron_retention Dg chr2R - chr2R_11973126_11974435 chr2R_11973125_11973126;chr2R_11974435_11974436 chr2R_11973069_11973125;chr2R_11974436_11974487 14.59 16.67 22.22 4.44 NA NA 26.67 9.09 17.39 11.11 NA 36.84 NA 23.53 9.52 11.54 NA 5.56 25.00 5.49 NA 26.09 21.43 16.67 15.38 27.78 11.54 NA 6.25 8.33 NA NA 6.52 28.00 12.50 7.94 25.00 30.00 8.33 6.98 0.00 27.59 NA 13.79 0.00 6.67 NA 16.22 21.43 NA 26.67 NA 0.00 NA 16.67 NA NA NA K intron_retention CG8184,I_chrX_15620707_15620769 chrX + chrX_15617158_15617265 chrX_15617157_15617158;chrX_15617265_15617266 chrX_15615597_15617157;chrX_15617266_15618411 71.11 76.47 75.56 90.54 70.00 68.63 80.00 71.79 69.64 62.03 73.53 71.43 79.41 65.22 66.07 68.52 68.57 71.79 69.57 64.71 63.64 85.63 71.70 74.67 85.19 91.49 69.12 44.19 68.04 71.96 79.25 79.25 65.57 70.21 71.60 87.95 67.24 76.67 73.74 58.39 89.58 70.34 68.42 59.00 52.38 70.13 65.00 71.11 72.41 71.88 69.86 67.35 63.83 80.00 71.43 72.73 66.67 73.74 K jcn_only_AA SD23414,CG9125,I_chrX_16696492_16696589 chrX - chrX_16696492_16696589 chrX_16696503_16696589 chrX_16696590_16696689;chrX_16696392_16696491 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.19 100.00 97.78 100.00 100.00 100.00 100.00 98.82 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.77 98.72 100.00 100.00 99.12 100.00 100.00 100.00 98.80 98.39 98.96 99.40 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.06 100.00 100.00 100.00 100.00 100.00 100.00 98.82 98.99 99.50 K jcn_only_AA CG3499,I_chr2R_18772777_18772819 chr2R - chr2R_18772317_18772430 chr2R_18772326_18772430 chr2R_18772431_18772523;chr2R_18772243_18772316 42.25 41.51 34.21 61.02 50.98 32.14 36.29 40.54 47.86 59.38 47.83 39.33 45.95 37.50 37.88 46.74 45.16 41.03 43.04 38.55 41.67 46.67 45.98 32.35 70.59 53.70 30.85 31.58 45.71 36.96 44.78 48.57 54.00 39.39 40.91 42.11 42.25 39.62 50.98 44.74 58.33 41.96 47.27 29.69 38.64 42.25 35.14 40.00 41.38 46.88 43.28 41.67 43.33 29.03 51.43 46.67 48.44 46.94 K alternative_acceptor CG6664 chr3L - chr3L_17008359_17008842 chr3L_17008367_17008842 chr3L_17008843_17008976;chr3L_17008241_17008358 93.75 100.00 95.83 94.12 91.67 91.30 93.33 96.97 92.86 92.31 95.24 89.74 95.00 84.21 96.15 87.50 93.75 94.44 95.00 90.91 95.00 95.83 90.62 100.00 94.44 95.45 96.97 80.00 96.00 87.50 90.00 95.24 92.00 93.75 95.00 100.00 92.59 88.00 84.62 93.02 97.22 89.47 100.00 87.10 90.91 90.32 94.44 97.67 97.14 95.00 92.31 85.19 91.30 94.74 93.10 84.00 95.45 91.43 K alternative_donor CG5316 chr3R + chr3R_15229212_15229614 chr3R_15229545_15229614 chr3R_15229615_15229840;chr3R_15229203_15229211 100.00 100.00 100.00 100.00 90.91 93.75 97.22 100.00 100.00 83.33 93.75 100.00 94.44 100.00 100.00 97.06 95.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 88.24 92.31 95.24 100.00 100.00 100.00 100.00 100.00 100.00 93.33 93.75 100.00 97.30 100.00 100.00 93.75 100.00 100.00 95.24 90.00 100.00 100.00 K jcn_only_AA phtf,I_chr2R_2629598_2630209 chr2R + chr2R_2631050_2631157 chr2R_2631050_2631097 chr2R_2630542_2631049;chr2R_2631158_2632041 100.00 100.00 NA 96.77 100.00 NA 100.00 97.50 97.92 96.43 NA 100.00 100.00 100.00 96.43 96.15 NA 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 NA 96.77 90.00 NA 100.00 100.00 NA 100.00 97.44 NA 100.00 98.44 96.97 100.00 100.00 NA 100.00 NA 96.88 100.00 95.00 NA 95.35 100.00 92.00 100.00 91.30 95.00 NA 96.77 100.00 100.00 100.00 K intron_retention CG12734,I_chr3L_3183812_3183932,I_chr3L_3184645_3185360 chr3L + chr3L_3183800_3183932 chr3L_3183799_3183800;chr3L_3183932_3183933 chr3L_3183712_3183799;chr3L_3183933_3183997 2.20 0.00 0.00 7.14 6.67 0.00 2.78 10.71 5.63 0.00 0.00 4.44 0.00 0.00 6.45 7.41 0.00 0.00 9.09 5.45 7.69 0.00 0.00 3.28 0.00 8.33 6.12 8.16 2.94 5.56 0.00 3.45 2.86 5.41 0.00 0.00 4.44 0.00 2.20 8.16 0.00 1.72 0.00 4.76 0.00 2.70 2.13 0.00 8.93 3.92 0.00 0.00 0.00 0.00 3.23 2.00 4.65 0.00 K cassette spin,I_chr2R_12013288_12013847 chr2R + chr2R_12024072_12024709 chr2R_12024072_12024338;chr2R_12024535_12024709 chr2R_12024339_12024534 chr2R_12023930_12024071;chr2R_12024710_12025743 1.91 2.29 1.64 3.95 1.48 2.96 2.22 1.54 2.47 1.82 2.08 4.96 0.00 3.39 0.61 0.64 2.56 1.67 1.24 1.97 2.65 1.39 1.47 2.03 1.40 1.61 3.70 8.66 2.63 2.50 1.79 1.85 2.24 2.18 1.83 2.22 2.89 2.26 1.45 0.68 2.04 2.52 2.63 1.41 1.73 1.91 1.64 0.00 1.95 2.72 1.79 1.68 0.78 2.05 1.80 2.48 1.46 0.75 K intron_retention CG13745,I_chr2R_4825500_4825553,I_chr2R_4825500_4825702 chr2R - chr2R_4825500_4825557 chr2R_4825499_4825500;chr2R_4825557_4825558 chr2R_4825400_4825499;chr2R_4825558_4825646 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA 5.56 NA NA NA 4.76 NA NA 0.00 3.70 NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K intron_retention Unr,DMG4-MB6.chr3L.15.021 chr3L - chr3L_8429811_8429864 chr3L_8429810_8429811;chr3L_8429864_8429865 chr3L_8429346_8429810;chr3L_8429865_8430072 97.34 96.70 96.30 99.43 96.43 98.80 98.50 95.16 97.34 97.96 98.41 96.74 96.25 98.70 97.44 97.39 96.00 96.39 97.62 97.89 100.00 99.11 96.20 96.40 97.73 97.01 97.84 95.24 94.51 96.63 97.75 97.06 98.25 95.51 99.00 98.31 97.50 94.34 94.04 94.93 95.92 95.87 93.98 93.69 97.14 95.16 97.44 97.87 97.85 97.50 97.44 97.22 100.00 97.56 93.52 97.73 97.06 97.62 K alternative_donor CG4199,I_chrX_1962457_1964222 chrX - chrX_1965614_1967409;chrX_1965614_1967149;chrX_1965614_1966582 chrX_1965614_1965872 chrX_1965393_1965613;chrX_1967410_1967460 100.00 97.06 96.67 100.00 100.00 100.00 93.94 100.00 100.00 95.45 100.00 98.08 92.86 100.00 100.00 100.00 100.00 100.00 100.00 98.63 100.00 90.00 98.04 100.00 100.00 100.00 100.00 97.06 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 98.18 100.00 98.08 97.10 96.00 98.46 95.24 97.56 100.00 100.00 100.00 100.00 98.36 100.00 100.00 96.77 97.22 100.00 100.00 97.06 100.00 97.44 K intron_retention CREF_chr3R_5589662_5589762,CG8481 chr3R + chr3R_5593863_5594466 chr3R_5593862_5593863;chr3R_5594466_5594467 chr3R_5593583_5593862;chr3R_5594467_5594493 42.11 NA 23.08 46.15 NA NA NA 30.77 37.50 NA 30.77 40.00 NA NA NA NA NA NA NA 46.67 NA 63.64 NA NA NA NA NA NA NA NA NA 33.33 23.08 42.11 NA NA NA NA NA 47.62 NA 50.00 NA 46.15 26.67 50.00 NA 46.15 NA NA NA NA NA NA NA NA NA NA K intron_retention kis,RI_chr2L_242745_242800,I_chr2L_242926_250756 chr2L - chr2L_242745_250756 chr2L_242744_242745;chr2L_250756_250757 chr2L_242645_242744;chr2L_250757_250774 0.00 0.00 6.45 6.67 NA 7.69 11.11 11.11 3.57 NA NA 4.00 8.00 0.00 9.09 3.45 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA 0.00 4.76 NA NA 0.00 NA NA 0.00 NA 9.30 0.00 NA NA NA NA 0.00 6.52 NA NA 0.00 NA NA 0.00 NA NA NA N cassette cher,I_chr3R_12927155_12927241,I_chr3R_12927155_12927867,I_chr3R_12927155_12927890,I_chr3R_12943024_12948119 chr3R - chr3R_12926801_12929977 chr3R_12926801_12927073;chr3R_12927155_12929977 chr3R_12927074_12927154 chr3R_12926714_12926800;chr3R_12929978_12930113 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Nc73EF,I_chr3L_16950628_16951334,I_chr3L_16950952_16952198,I_chr3L_16951588_16952198,I_chr3L_16951626_16952198,I_chr3L_16952138_16952198,I_chr3L_16952985_16955434,I_chr3L_16953768_16954599 chr3L + chr3L_16950628_16952198 chr3L_16950627_16950628;chr3L_16952198_16952199 chr3L_16950617_16950627;chr3L_16952199_16952207 0.00 NA 4.17 4.35 0.00 NA 10.00 3.23 3.28 NA NA 2.86 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 4.76 0.00 0.00 0.00 NA 0.00 9.52 NA NA NA NA NA 0.00 0.00 0.00 6.25 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA 2.56 0.00 2.27 5.56 NA NA 0.00 0.00 0.00 NA N intron_retention growl chr3R + chr3R_229003_229955 chr3R_229002_229003;chr3R_229955_229956 chr3R_228731_229002;chr3R_229956_233725 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA 100.00 NA 100.00 NA 66.67 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA NA NA 100.00 NA 100.00 K jcn_only_AD vig chr2L - chr2L_15067690_15067915;chr2L_15067690_15067995;chr2L_15067690_15067868;chr2L_15067690_15068029;chr2L_15067690_15067999 chr2L_15067690_15067952 chr2L_15066937_15067689;chr2L_15068030_15068031 3.51 5.36 1.90 3.65 3.73 4.55 3.14 7.66 2.69 6.00 3.45 3.85 3.03 3.70 2.10 4.00 2.73 3.85 1.16 3.74 3.97 2.52 0.00 3.70 0.00 2.48 0.00 4.14 9.09 4.17 2.11 9.52 4.12 1.64 2.86 6.49 5.98 7.25 1.45 7.12 5.41 3.32 3.51 3.85 4.40 2.38 1.32 4.64 2.95 0.00 2.97 7.06 2.88 0.00 2.26 2.90 2.30 5.66 K intron_retention Tsp42Ed chr2R - chr2R_2898360_2899096 chr2R_2898359_2898360;chr2R_2899096_2899097 chr2R_2898168_2898359;chr2R_2899097_2899359 9.82 7.50 7.38 10.07 6.82 8.04 6.87 6.73 8.70 14.67 11.90 6.46 6.98 8.20 6.43 6.49 8.24 8.33 3.87 9.90 8.18 7.56 13.87 12.09 9.82 5.17 14.87 14.29 14.57 13.38 10.44 16.13 16.02 6.93 10.24 10.07 15.08 4.67 9.94 17.33 13.64 5.67 3.70 16.67 13.89 13.29 11.92 14.67 4.89 9.46 13.33 9.82 9.42 12.93 7.38 9.80 7.52 10.55 K intron_retention CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4985425_4985861 chr2L_4985424_4985425;chr2L_4985861_4985862 chr2L_4985358_4985424;chr2L_4985862_4985954 2.54 2.13 0.00 0.00 0.00 0.00 3.12 1.27 3.70 0.00 10.53 3.12 5.41 0.00 0.00 9.76 6.06 0.00 4.35 3.33 0.00 2.13 1.37 3.12 0.00 0.00 1.32 9.52 4.35 2.13 3.92 NA 0.00 5.45 2.94 1.82 0.00 0.00 0.00 8.57 5.71 4.35 8.82 5.66 0.00 3.12 0.00 6.38 4.35 4.35 3.39 5.71 0.00 4.55 1.85 9.68 0.00 0.00 K alternative_donor CG5482,I_chr2R_14519136_14519239 chr2R - chr2R_14519136_14519367;chr2R_14519136_14519239 chr2R_14519136_14519254 chr2R_14519036_14519135;chr2R_14519368_14519403 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 96.15 93.33 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 NA 90.91 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG10737 chr2R + chr2R_15057912_15058122 chr2R_15057912_15057980 chr2R_15057784_15057911;chr2R_15058123_15058183 0.00 NA NA 0.00 NA NA 5.00 0.00 7.41 NA NA 7.41 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 4.35 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG2162,I_chr3L_3039516_3039562 chr3L + chr3L_3039516_3039578 chr3L_3039516_3039562 chr3L_3039416_3039515;chr3L_3039579_3039662 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 1.20 1.08 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 1.45 0.00 0.00 2.99 0.00 0.00 0.00 0.00 0.00 1.10 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.69 0.00 0.00 0.00 0.00 1.00 0.92 0.00 0.00 1.44 0.00 0.00 0.00 0.00 K alternative_last_exon CG42399,CG3709,F_chr2L_147711_148337,CG33635 chr2L - chr2L_149227_155127 chr2L_155060_155127 chr2L_148092_149226 chr2L_151115_155059 chr2L_155128_155178 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention fry,I_chr3L_9636648_9656042 chr3L - chr3L_9656618_9656720 chr3L_9656617_9656618;chr3L_9656720_9656721 chr3L_9656473_9656617;chr3L_9656721_9656890 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 3.45 NA NA 0.00 0.00 0.00 NA K intron_retention TfIIFalpha,I_chr3R_2211939_2212057 chr3R + chr3R_2207328_2207403 chr3R_2207327_2207328;chr3R_2207403_2207404 chr3R_2206408_2207327;chr3R_2207404_2207991 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.67 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.80 K intron_retention sol chrX + chrX_21221878_21222886 chrX_21221877_21221878;chrX_21222886_21222887 chrX_21221327_21221877;chrX_21222887_21223512 11.11 8.51 12.90 14.29 12.50 12.00 19.57 17.39 9.84 5.88 17.24 11.67 20.00 21.43 12.50 21.21 11.43 17.24 16.67 12.15 19.23 22.62 7.41 9.46 12.24 22.73 9.52 13.51 7.06 7.69 8.47 2.63 4.73 11.59 10.64 18.18 4.13 9.09 9.64 6.13 2.00 11.11 22.73 8.86 7.14 10.61 4.35 7.33 11.76 0.00 16.39 13.89 7.14 11.11 10.00 9.68 9.09 6.82 K jcn_only_AA TwdlG,RI_chr3R_75576_75628 chr3R - chr3R_75568_75628 chr3R_75576_75628 chr3R_75629_75728;chr3R_75476_75567 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.17 NA NA NA NA NA NA NA NA K cassette Gug,R_chr3L_8444636_8444874,I_chr3L_8455244_8456103 chr3L + chr3L_8445229_8456103 chr3L_8445229_8455071;chr3L_8455204_8456103 chr3L_8455072_8455203 chr3L_8445200_8445228;chr3L_8456104_8456203 100.00 100.00 100.00 95.83 100.00 100.00 87.50 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 NA NA NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA 100.00 K intron_retention Prp19 chr2R - chr2R_14338331_14338394 chr2R_14338330_14338331;chr2R_14338394_14338395 chr2R_14336977_14338330;chr2R_14338395_14338503 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 8.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor SdhB chr2R + chr2R_2695323_2695594 chr2R_2695323_2695542 chr2R_2695116_2695322;chr2R_2695595_2696031 0.89 0.41 0.90 0.45 0.00 0.00 1.97 0.00 0.33 0.73 0.66 0.29 0.00 0.70 0.79 0.00 0.00 1.10 0.00 0.76 1.13 2.42 1.01 0.89 1.32 2.42 0.96 1.91 0.60 1.10 1.32 1.33 1.20 0.48 1.49 3.33 0.63 1.12 1.12 1.43 3.03 0.27 0.00 0.58 2.35 1.42 1.15 1.82 0.33 1.50 0.74 1.42 0.46 0.67 0.99 0.36 0.25 1.05 K jcn_only_AA CG32982,I_chr2L_9127467_9148754,EF_chr2L_9135385_9148841,F_chr2L_9149162_9154658 chr2L + chr2L_9162709_9163294;chr2L_9162709_9163143 chr2L_9162709_9163140 chr2L_9162363_9162708;chr2L_9163295_9163398 95.00 95.31 96.15 94.29 97.44 96.30 93.88 91.38 91.01 93.18 100.00 100.00 NA 97.37 93.02 96.55 96.15 96.30 100.00 96.67 96.15 94.24 96.15 91.67 95.12 92.00 92.77 93.33 95.45 96.67 97.56 94.00 92.98 90.91 97.87 94.55 92.16 95.83 95.24 93.75 94.59 93.83 95.00 96.06 97.78 94.25 92.13 91.43 91.04 93.51 94.68 98.04 90.32 98.68 95.00 96.70 91.78 96.25 K intron_retention Aats-arg chrX - chrX_15738015_15738072 chrX_15738014_15738015;chrX_15738072_15738073 chrX_15737886_15738014;chrX_15738073_15738078 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.52 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpS15Aa chrX - chrX_13231573_13231639 chrX_13231572_13231573;chrX_13231639_13231640 chrX_13231538_13231572;chrX_13231640_13231706 56.36 57.89 59.09 76.47 50.00 44.00 85.44 45.65 59.42 52.94 61.90 47.50 50.00 48.28 60.61 73.68 60.87 42.31 56.10 60.00 55.56 80.00 86.67 70.00 81.82 74.58 93.75 94.59 92.94 NA 56.67 45.45 NA 52.63 90.00 NA 65.38 80.00 62.50 41.67 44.44 56.36 55.00 NA NA 76.47 43.75 33.33 41.07 52.00 76.19 50.00 45.00 NA 46.67 47.83 49.09 36.36 K alternative_donor row,I_chr2R_11098574_11098633 chr2R - chr2R_11098574_11099081 chr2R_11098574_11098633 chr2R_11098474_11098573;chr2R_11099082_11099172 11.63 11.63 7.14 20.69 8.33 12.90 16.33 14.49 15.79 14.29 10.00 14.47 31.82 28.57 10.20 17.14 12.20 13.04 12.20 11.57 18.42 5.26 9.23 12.50 10.00 8.89 13.64 9.09 6.67 4.41 8.89 8.00 4.17 16.67 12.50 4.44 8.93 8.51 9.09 10.23 7.89 13.92 19.23 11.54 8.00 10.00 24.14 3.49 15.91 14.00 14.04 11.63 12.50 24.00 9.26 20.00 26.47 4.46 K cassette CG6448,I_chr2L_22156816_22158491 chr2L + chr2L_22156816_22158512 chr2L_22156816_22157022;chr2L_22157056_22158512 chr2L_22157023_22157055 chr2L_22156716_22156815;chr2L_22158513_22158591 1.30 0.73 2.68 3.18 1.87 2.38 1.44 1.22 1.62 0.00 10.98 1.78 1.19 1.18 1.60 1.01 0.89 1.41 0.94 3.12 4.08 1.30 1.17 1.16 1.94 2.06 1.86 2.56 2.53 0.78 0.00 0.00 0.00 1.54 0.99 1.72 1.52 0.72 1.52 0.53 0.00 0.50 1.30 0.64 1.37 0.81 1.43 1.41 0.60 1.33 1.12 1.41 0.93 0.93 0.82 1.67 0.58 0.00 K intron_retention rho chr3L + chr3L_1465823_1466489 chr3L_1465822_1465823;chr3L_1466489_1466490 chr3L_1465466_1465822;chr3L_1466490_1466907 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 10.00 2.78 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K alternative_acceptor Pdsw chr2L + chr2L_3466229_3466315 chr2L_3466229_3466297 chr2L_3466160_3466228;chr2L_3466316_3466416 6.94 3.45 6.94 6.06 4.76 3.92 8.91 5.36 3.12 7.69 7.14 5.98 4.62 5.41 4.00 4.65 5.41 5.33 3.85 5.67 3.39 9.30 4.44 7.59 24.24 27.08 21.21 15.00 29.17 20.00 4.05 10.71 14.29 1.68 7.69 32.14 4.46 4.08 11.94 8.00 44.44 3.66 5.36 9.76 6.52 19.05 8.22 11.11 4.72 9.62 11.11 6.94 13.64 7.84 6.17 6.74 6.94 9.38 K alternative_donor CG1572,RI_chrX_11450380_11450442,I_chrX_11450380_11452520 chrX - chrX_11450380_11450442;chrX_11450380_11452571 chrX_11450380_11452565 chrX_11450280_11450379;chrX_11452572_11452620 2.27 2.12 2.20 2.31 1.74 1.71 1.77 2.38 1.82 3.07 1.78 2.27 1.62 2.11 4.49 2.11 1.41 1.67 2.01 2.54 1.95 1.99 2.61 1.97 2.36 1.92 2.84 3.69 3.51 3.05 1.79 2.98 2.49 1.68 2.16 2.19 2.00 1.74 1.40 3.11 2.37 1.88 1.54 2.30 3.18 2.70 2.64 2.62 2.51 2.38 2.77 1.73 2.98 3.27 2.16 2.30 2.31 2.69 K intron_retention Zyx102EF,I_chr4_1078380_1078835,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1078380_1078432 chr4_1078379_1078380;chr4_1078432_1078433 chr4_1078280_1078379;chr4_1078433_1078643 0.00 0.00 0.00 5.77 0.00 11.11 0.00 4.65 3.03 NA NA 0.00 0.00 0.00 0.00 6.06 0.00 0.00 0.00 2.38 0.00 NA 0.00 0.00 NA 4.00 NA NA NA NA 0.00 13.33 NA 2.17 NA NA NA NA NA 7.14 NA 12.77 0.00 0.00 5.56 0.00 0.00 NA 11.32 3.85 7.14 0.00 0.00 0.00 0.00 4.17 0.00 0.00 K intron_retention RI_chr3L_11108913_11109028,Ufd1-like chr3L - chr3L_11115965_11116021 chr3L_11115964_11115965;chr3L_11116021_11116022 chr3L_11115064_11115964;chr3L_11116022_11116276 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 1.69 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Hcf,I_chr4_390281_391716,I_chr4_391783_391844,I_chr4_391787_391885,I_chr4_391984_392875 chr4 + chr4_390591_391716 chr4_390590_390591;chr4_391716_391717 chr4_390436_390590;chr4_391717_391782 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 2.00 0.00 0.00 2.15 0.00 0.00 0.00 0.00 0.00 1.41 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 K alternative_acceptor Mlh1,I_chr2R_4058619_4058671 chr2R + chr2R_4058619_4058678 chr2R_4058619_4058671 chr2R_4058519_4058618;chr2R_4058679_4058771 87.50 NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA K jcn_only_AD Hr39,I_chr2L_21256047_21256260 chr2L + chr2L_21237347_21238280;chr2L_21237385_21238280;chr2L_21237421_21238280;chr2L_21237397_21238280;chr2L_21237405_21238280 chr2L_21237364_21238280 chr2L_21238281_21238529;chr2L_21237247_21237346 2.86 NA NA 2.86 NA NA 5.00 3.23 0.00 NA NA 2.86 0.00 NA NA 0.00 NA NA NA 4.44 NA NA 5.88 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 8.33 0.00 NA NA NA NA 0.00 NA 0.00 NA 4.17 NA NA NA 3.33 2.38 NA 4.17 NA NA NA 4.17 NA NA NA K intron_retention GXIVsPLA2,I_chr3L_15948429_15948487,I_chr3L_15950680_15950738 chr3L + chr3L_15948410_15948487 chr3L_15948409_15948410;chr3L_15948487_15948488 chr3L_15948329_15948409;chr3L_15948488_15948587 33.33 NA NA 35.71 NA NA 23.08 NA NA NA NA 35.71 NA NA NA 26.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA 38.46 NA NA NA NA NA NA 11.11 NA NA NA NA NA NA NA NA NA K jcn_only_AA gem,I_chr2R_6015083_6015660 chr2R + chr2R_6016198_6016327 chr2R_6016198_6016288 chr2R_6016086_6016197;chr2R_6016328_6016534 20.41 22.86 17.39 26.98 28.95 24.78 16.27 19.61 17.47 23.08 20.41 18.75 20.63 26.83 18.66 20.13 23.02 25.00 20.18 17.70 19.30 38.85 14.93 23.40 21.32 38.39 10.95 20.93 33.33 25.55 25.29 17.11 22.55 18.39 28.32 17.69 26.27 23.00 19.56 23.91 24.14 21.83 15.70 19.90 18.69 18.03 13.70 14.63 15.41 19.20 20.18 27.03 17.47 18.46 22.08 14.40 20.86 23.40 K alternative_last_exon lola,I_chr2R_6380094_6419543,I_chr2R_6380747_6419543,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6389565_6389862 chr2R_6389735_6389862 chr2R_6387703_6389564 chr2R_6389602_6389734 chr2R_6389863_6389967 11.54 9.09 16.67 15.38 0.00 7.69 29.63 14.29 16.13 13.33 9.09 15.38 23.08 16.67 17.65 23.08 10.00 8.33 25.00 10.71 20.00 17.39 15.00 11.11 18.75 27.27 6.25 6.67 11.54 5.56 16.67 7.69 13.64 10.00 10.00 23.08 8.00 0.00 5.00 11.11 16.67 8.70 11.11 16.67 0.00 8.33 15.38 14.29 22.22 0.00 20.83 25.00 9.09 0.00 0.00 11.11 8.33 17.65 K intron_retention CG4829,I_chrX_16717240_16717547 chrX + chrX_16719597_16719669 chrX_16719596_16719597;chrX_16719669_16719670 chrX_16718955_16719596;chrX_16719670_16720526 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.23 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Gug,R_chr3L_8444636_8444874,I_chr3L_8455244_8456103 chr3L + chr3L_8455204_8456103 chr3L_8455203_8455204;chr3L_8456103_8456104 chr3L_8455194_8455203;chr3L_8456104_8456203 6.51 NA NA 7.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.88 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG8675,Fim,I_chrX_17193096_17195392 chrX - chrX_17183071_17185283 chrX_17183070_17183071;chrX_17185283_17185284 chrX_17181960_17183070;chrX_17185284_17185735 3.08 0.00 5.13 0.00 0.00 0.00 2.94 3.39 4.76 0.00 6.67 3.70 12.50 4.00 0.00 3.08 0.00 0.00 5.41 4.35 4.65 5.13 3.28 5.26 0.00 4.76 5.00 0.00 NA 4.76 0.00 NA 6.25 3.57 5.00 NA 0.00 0.00 0.00 4.65 6.67 1.64 0.00 0.00 5.26 0.00 NA 0.00 5.88 0.00 2.27 0.00 NA 7.69 0.00 0.00 NA 10.53 N multi_cassette CG14709,F_chr3R_7396835_7396923,F_chr3R_7405343_7405539 chr3R + chr3R_7395557_7397989 chr3R_7395557_7396748;chr3R_7396835_7396896;chr3R_7397045_7397107;chr3R_7397284_7397336;chr3R_7397528_7397989 chr3R_7396749_7396834;chr3R_7396897_7397044;chr3R_7397108_7397283;chr3R_7397337_7397527 chr3R_7394972_7395556;chr3R_7397990_7399584 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 81.54 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention homer chr2L - chr2L_6720943_6720996 chr2L_6720942_6720943;chr2L_6720996_6720997 chr2L_6720527_6720942;chr2L_6720997_6721131 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 NA 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K alternative_donor Gel,I_chr3R_63962_64024,I_chr3R_66533_66599 chr3R + chr3R_66437_66599 chr3R_66533_66599 chr3R_66600_66699;chr3R_66433_66436 2.52 1.95 3.24 3.83 3.69 2.79 2.51 1.18 2.53 2.63 3.95 3.23 4.32 1.13 2.52 2.47 2.53 2.31 1.89 2.62 2.88 3.82 2.33 2.70 2.56 2.03 3.06 4.08 5.82 1.94 2.45 2.63 1.13 2.74 2.33 1.47 4.72 2.73 2.27 1.88 1.64 1.82 2.53 2.63 1.60 1.54 2.14 2.01 2.22 3.00 3.30 3.88 1.98 2.34 1.65 1.77 2.95 1.28 K jcn_only_AD Shawn_Tyler,CG14213 chrX + chrX_19533110_19533177 chrX_19533117_19533177 chrX_19533178_19533426;chrX_19532929_19533109 14.29 NA NA 21.88 NA NA NA 19.23 25.93 NA NA 17.65 NA NA NA NA NA NA NA 24.00 4.76 25.00 21.43 12.50 NA NA NA NA NA NA 14.29 NA NA 6.67 NA NA 4.17 4.55 20.83 22.86 NA 28.00 NA 4.76 NA 10.00 NA NA 13.79 13.64 4.76 15.00 NA NA NA NA 13.04 NA K alternative_acceptor TepIV,EI_chr2L_19548696_19549582 chr2L + chr2L_19553916_19553969;chr2L_19553916_19553975 chr2L_19553916_19553978 chr2L_19553362_19553915;chr2L_19553979_19556092 1.92 4.88 6.15 0.90 1.75 0.00 3.09 1.49 4.46 4.08 1.37 1.61 1.05 1.47 4.11 0.78 1.56 0.00 2.53 3.41 3.08 2.67 0.81 1.14 0.00 1.75 1.18 2.21 2.35 2.15 1.20 4.94 1.92 0.93 1.85 8.22 2.70 1.89 1.18 4.10 0.83 2.37 3.28 2.11 2.65 2.05 3.37 3.01 2.13 1.94 1.22 1.69 1.79 4.08 3.80 1.39 0.74 1.35 K alternative_acceptor CG6697 chr3R + chr3R_18887542_18887603 chr3R_18887542_18887598 chr3R_18887241_18887541;chr3R_18887604_18888474 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 91.67 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 NA 100.00 100.00 100.00 93.33 100.00 100.00 K jcn_only_AD CG11658,I_chr3L_11704048_11704107 chr3L - chr3L_11700672_11701407;chr3L_11700672_11701491 chr3L_11700672_11701507 chr3L_11700405_11700671;chr3L_11701508_11701663 90.03 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 84.62 NA NA NA 95.45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG8067 chr2R + chr2R_9871329_9871394 chr2R_9871329_9871389 chr2R_9871150_9871328;chr2R_9871395_9871645 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 100.00 90.00 100.00 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 92.86 NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 K intron_retention CG17838,I_chr3R_16625404_16631668 chr3R + chr3R_16628274_16631668 chr3R_16628273_16628274;chr3R_16631668_16631669 chr3R_16628255_16628273;chr3R_16631669_16631768 19.26 11.76 22.22 20.00 NA NA 27.78 42.86 14.29 6.25 NA 21.05 14.29 NA NA 21.43 NA 23.08 NA 23.08 NA NA 12.50 NA NA 23.53 12.50 30.77 11.76 21.43 33.33 NA 16.67 30.43 NA 5.00 0.00 NA 12.50 25.00 NA 21.05 NA 13.33 NA NA NA 16.67 18.52 NA 17.65 NA NA NA 25.00 NA NA 15.00 K cassette CG18317,RI_chr2L_1718492_1723881,I_chr2L_1718904_1718995,RI_chr2L_1718904_1724234 chr2L - chr2L_1718492_1723881 chr2L_1718492_1718739;chr2L_1718904_1723881 chr2L_1718740_1718903 chr2L_1718421_1718491;chr2L_1723882_1723981 97.44 96.88 100.00 87.50 100.00 100.00 100.00 94.44 97.14 96.43 100.00 93.55 100.00 90.00 100.00 100.00 91.67 100.00 100.00 94.87 100.00 90.62 100.00 97.73 100.00 90.91 100.00 97.14 96.15 100.00 100.00 93.33 97.30 95.00 100.00 100.00 100.00 97.30 98.00 96.55 100.00 96.55 80.00 100.00 96.77 96.30 97.44 100.00 96.43 96.77 100.00 100.00 96.30 96.67 94.12 100.00 100.00 93.75 K intron_retention CG7546 chr3L + chr3L_7504729_7504804 chr3L_7504728_7504729;chr3L_7504804_7504805 chr3L_7504611_7504728;chr3L_7504805_7505016 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD I_chr3L_18892015_18892405,RpL26,I_chr3L_18892244_18892405,I_chr3L_18892340_18892405,I_chr3L_18892434_18892499 chr3L + chr3L_18892240_18892405 chr3L_18892340_18892405 chr3L_18892406_18892433;chr3L_18892172_18892239 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.31 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.88 0.00 0.00 0.00 0.00 0.00 3.18 0.00 0.00 0.00 0.00 0.00 0.59 0.95 0.00 0.00 0.00 0.19 0.73 0.06 0.00 0.45 0.20 0.52 0.56 0.34 0.00 0.63 1.22 0.00 0.46 1.20 0.00 1.14 0.34 0.28 K jcn_only_AD Myb,RI_chrX_15752571_15753225 chrX - chrX_15751579_15751673;chrX_15751579_15751709;chrX_15751579_15751749 chrX_15751579_15751682 chrX_15749823_15751578;chrX_15751750_15751876 6.92 1.92 4.76 5.97 3.77 6.52 10.45 6.93 7.48 3.33 12.82 5.30 5.00 9.59 1.52 5.96 10.53 2.22 3.64 6.56 12.50 3.85 10.34 5.13 6.90 4.55 7.69 4.76 6.06 10.71 9.09 16.33 19.72 6.54 9.09 0.00 10.00 5.56 5.13 7.79 8.33 9.78 10.64 1.61 10.42 6.45 8.11 7.94 4.32 NA 8.33 10.53 5.56 18.18 4.05 10.71 10.34 6.96 K intron_retention alc chr2R - chr2R_5023211_5023269 chr2R_5023210_5023211;chr2R_5023269_5023270 chr2R_5023142_5023210;chr2R_5023270_5023364 0.82 0.00 1.52 0.00 0.00 1.87 1.68 1.36 2.06 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 1.89 1.92 0.43 2.04 0.00 0.82 0.80 2.15 0.00 1.54 2.35 1.06 0.00 0.00 1.54 0.00 1.42 0.00 1.83 1.32 0.00 0.92 1.07 0.00 1.79 0.00 0.00 0.82 0.99 0.54 1.14 1.03 0.88 1.57 0.00 0.00 0.00 1.65 0.00 1.06 0.40 N alternative_donor None chrU - chrU_7543786_7544888 chrU_7543786_7543849 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG1598 chr2R - chr2R_3426218_3426276 chr2R_3426217_3426218;chr2R_3426276_3426277 chr2R_3425719_3426217;chr2R_3426277_3426717 1.03 1.03 0.00 4.20 0.00 0.00 5.22 2.26 1.05 3.92 0.00 0.76 1.56 0.00 0.00 1.15 0.00 4.35 0.00 0.82 2.17 7.41 0.72 1.61 0.00 2.78 4.27 6.58 2.13 1.09 2.38 0.00 1.12 0.00 0.00 0.00 1.27 1.47 1.24 0.00 3.75 0.61 1.25 0.00 0.00 1.61 0.77 3.17 2.84 2.40 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG32016,I_chr4_972691_972763,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_972704_972763;chr4_972719_972763 chr4_972691_972763 chr4_972764_972863;chr4_972619_972690 0.00 0.00 0.00 0.00 0.00 2.70 1.11 0.00 0.75 NA 3.85 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 2.17 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 3.08 0.00 0.00 0.00 2.86 0.00 0.00 1.82 2.33 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Mtch,RI_chr3L_184729_185366,I_chr3L_185367_185925 chr3L + chr3L_184682_184777 chr3L_184681_184682;chr3L_184777_184778 chr3L_184674_184681;chr3L_184778_184854 77.78 83.33 71.43 72.97 53.33 57.14 77.78 82.05 71.43 80.00 66.67 80.56 56.25 80.95 74.07 84.62 70.00 75.00 70.83 72.73 61.11 76.47 96.00 85.71 91.67 84.21 92.86 81.82 82.14 94.44 71.43 75.00 75.00 69.44 92.86 85.00 83.33 89.47 81.25 68.52 71.43 70.00 77.78 87.50 56.52 84.85 94.44 63.89 72.73 92.31 96.77 76.47 76.47 100.00 62.50 86.67 95.24 62.86 K intron_retention CG14614,REI_chrX_21856047_21856229,RI_chrX_21856896_21857109 chrX - chrX_21856896_21857109 chrX_21856895_21856896;chrX_21857109_21857110 chrX_21856796_21856895;chrX_21857110_21857209 100.00 97.67 97.67 100.00 100.00 100.00 100.00 98.25 98.67 100.00 96.97 97.30 100.00 97.50 100.00 100.00 96.88 100.00 100.00 100.00 97.67 94.74 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 98.11 100.00 97.50 100.00 100.00 98.15 100.00 100.00 98.65 96.97 100.00 100.00 97.06 96.97 100.00 98.41 96.00 97.96 100.00 94.12 100.00 100.00 100.00 100.00 100.00 K intron_retention klett chrX - chrX_21499782_21499870 chrX_21499781_21499782;chrX_21499870_21499871 chrX_21499389_21499781;chrX_21499871_21500596 36.60 60.00 33.33 46.15 40.00 46.15 28.57 36.36 43.75 NA NA 29.17 42.86 30.77 30.00 NA 41.67 46.15 36.84 37.50 NA 29.41 46.15 34.78 25.00 30.77 45.00 53.85 33.33 15.79 25.00 NA 26.67 36.84 46.15 47.62 29.41 33.33 35.71 29.55 NA 34.62 41.67 34.78 25.00 44.44 41.67 33.33 44.44 36.84 47.83 NA 63.64 50.00 42.11 35.00 35.71 28.57 K alternative_donor RpL8,I_chr3L_2587513_2587750,I_chr3L_2587600_2587750,RI_chr3L_2587690_2587750,I_chr3L_2589746_2592161 chr3L + chr3L_2587600_2587750;chr3L_2587690_2587750 chr3L_2587514_2587750 chr3L_2587751_2587850;chr3L_2587500_2587513 99.94 99.88 100.00 99.96 100.00 100.00 99.96 99.94 99.97 100.00 99.97 100.00 99.91 99.97 100.00 99.96 100.00 99.97 100.00 99.96 99.97 99.84 99.95 99.97 100.00 100.00 99.94 99.92 99.93 99.92 99.88 99.94 99.92 99.93 99.79 99.90 100.00 100.00 99.96 99.92 99.88 99.97 99.96 99.89 99.97 99.86 99.92 99.90 99.94 99.88 99.87 99.89 99.92 99.69 99.93 99.93 99.92 100.00 K intron_retention cic,RI_chr3R_16122222_16123529 chr3R + chr3R_16122222_16124105 chr3R_16122221_16122222;chr3R_16124105_16124106 chr3R_16122122_16122221;chr3R_16124106_16124254 1.72 0.00 0.00 3.35 0.00 1.22 1.82 2.55 1.83 0.00 1.41 0.95 2.67 2.63 0.76 2.78 2.25 1.61 2.41 0.46 1.02 18.18 1.64 0.81 3.54 5.75 1.05 5.81 3.45 5.49 0.00 0.00 4.72 1.47 2.60 9.02 2.06 1.72 1.68 2.03 4.35 0.93 0.00 2.94 8.57 2.35 2.56 3.60 0.00 0.00 2.34 0.00 0.00 0.00 0.00 0.00 4.44 0.00 K intron_retention CG12576,RI_chrX_21878289_21882347,I_chrX_21882735_21882809,I_chrX_21882735_21883407,I_chrX_21882735_21883467,I_chrX_21882735_21883620,I_chrX_21882735_21883714 chrX - chrX_21882735_21883750 chrX_21882734_21882735;chrX_21883750_21883751 chrX_21882635_21882734;chrX_21883751_21883814 0.00 0.00 0.00 4.55 0.00 0.00 6.94 2.29 0.00 0.00 0.00 0.00 0.00 0.00 3.33 4.35 1.54 0.00 2.78 1.17 0.00 1.08 0.00 0.00 0.00 0.00 1.96 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 2.35 0.00 0.00 0.00 0.00 2.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20341925_20342041;chr3L_20341636_20342041;chr3L_20341509_20342041;chr3L_20341865_20342041;chr3L_20341486_20342041;chr3L_20341522_20342041;chr3L_20341751_20342041;chr3L_20341530_20342041;chr3L_20341629_20342041;chr3L_20341759_20342041 chr3L_20341598_20342041 chr3L_20342042_20342306;chr3L_20341482_20341485 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD dwg,RI_chrX_2622297_2622355,RI_chrX_2622297_2622430,RI_chrX_2622435_2622577,RI_chrX_2627170_2627263 chrX + chrX_2622297_2622577 chrX_2622435_2622577 chrX_2622578_2622677;chrX_2622197_2622296 1.55 0.00 2.33 0.00 0.00 5.13 NA 0.00 1.72 0.00 0.00 1.33 0.00 5.00 0.00 2.17 0.00 0.00 2.56 1.19 0.00 NA 1.79 0.00 2.78 3.45 6.12 0.00 4.26 0.00 2.04 2.94 4.26 0.00 3.57 3.85 1.85 0.00 0.00 1.54 0.00 2.99 0.00 0.00 3.92 1.49 2.50 1.56 4.48 10.87 3.64 NA 2.13 0.00 2.70 0.00 2.38 0.00 K cassette CG12581,RI_chr3R_1914_9438,I_chr3R_9380_9438 chr3R + chr3R_1914_9438 chr3R_1914_7783;chr3R_8650_9438 chr3R_7784_8649 chr3R_1814_1913;chr3R_9439_9538 100.00 100.00 97.22 87.88 96.43 100.00 100.00 100.00 98.28 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 96.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 97.67 96.00 100.00 96.55 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.18 100.00 97.22 100.00 100.00 97.62 97.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 97.67 97.83 K intron_retention CG3209,I_chr2R_19957751_19959513,RI_chr2R_19957766_19960227,I_chr2R_19959163_19959513 chr2R + chr2R_19957766_19959513 chr2R_19957765_19957766;chr2R_19959513_19959514 chr2R_19957666_19957765;chr2R_19959514_19959528 25.81 33.33 23.81 40.00 31.58 25.93 44.44 26.19 28.33 26.67 25.00 25.81 70.00 36.00 27.59 19.51 21.21 7.14 29.03 17.32 23.40 61.54 27.03 22.00 38.46 19.51 35.00 34.78 30.43 35.00 19.15 23.08 22.50 37.50 36.84 21.88 21.74 33.33 30.77 19.23 17.24 22.95 38.10 23.68 10.00 21.21 21.21 24.24 25.00 45.00 35.29 30.00 13.79 25.00 30.00 20.00 17.65 9.09 K intron_retention Rab30,I_chr2L_7032178_7032236 chr2L - chr2L_7032178_7032310 chr2L_7032177_7032178;chr2L_7032310_7032311 chr2L_7032078_7032177;chr2L_7032311_7032336 0.00 0.00 0.00 0.00 NA 0.00 5.26 0.00 4.17 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 0.00 23.53 0.00 NA NA NA NA NA 15.79 6.25 7.14 NA 8.33 6.67 NA 7.69 NA 0.00 NA 3.57 11.11 7.69 NA 0.00 9.09 0.00 NA 0.00 3.85 NA 0.00 NA NA NA NA NA NA 0.00 K intron_retention CG11198 chr2R - chr2R_3862127_3862194 chr2R_3862126_3862127;chr2R_3862194_3862195 chr2R_3861620_3862126;chr2R_3862195_3862329 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 5.19 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 K alternative_donor RpL35,I_chrX_5566913_5567030,I_chrX_5567168_5567220 chrX + chrX_5566913_5567030;chrX_5566909_5567030 chrX_5566556_5567030 chrX_5567031_5567130;chrX_5566554_5566555 12.11 8.95 12.46 11.69 15.72 15.68 8.76 11.56 12.30 13.55 14.88 13.80 11.43 11.29 15.27 7.46 12.53 12.21 10.50 12.09 12.82 13.33 8.26 8.82 10.08 12.63 5.46 20.29 7.70 17.28 8.28 16.75 36.09 10.09 14.61 8.65 12.11 12.13 15.79 43.83 9.55 14.60 10.82 23.23 17.61 8.13 9.74 12.35 11.99 7.53 5.54 10.73 28.94 6.23 12.24 8.46 8.73 17.61 N intron_retention I_chrX_16309561_16309689,hang,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16323441_16323548 chrX_16323440_16323441;chrX_16323548_16323549 chrX_16323093_16323440;chrX_16323549_16323697 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.94 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA 100.00 K intron_retention Gs1l,I_chr2L_4456517_4456723 chr2L - chr2L_4455739_4455856 chr2L_4455738_4455739;chr2L_4455856_4455857 chr2L_4455221_4455738;chr2L_4455857_4455924 10.53 15.62 21.88 16.36 0.00 16.67 30.00 21.88 13.79 16.67 10.53 18.75 10.53 14.29 8.33 12.50 8.70 0.00 23.08 18.46 20.00 50.00 10.45 12.50 9.09 34.62 8.82 9.26 11.76 15.38 7.59 10.26 9.76 9.68 7.69 9.26 8.33 3.57 7.41 19.05 10.53 5.36 13.64 5.26 12.07 11.11 6.67 18.75 17.39 4.44 3.92 17.86 0.00 3.77 25.00 6.67 5.00 12.12 K jcn_only_AD l(2)37Ce,RI_chr2L_19132432_19132483,I_chr2L_19134277_19143634,RI_chr2L_19145845_19146761 chr2L + chr2L_19132417_19132483 chr2L_19132432_19132483 chr2L_19132484_19132583;chr2L_19132357_19132416 0.00 0.00 0.00 0.00 0.00 0.00 1.31 0.00 0.46 0.00 2.78 0.00 1.39 2.47 0.00 0.00 0.00 0.00 2.67 0.96 1.56 9.09 0.00 0.00 0.00 0.00 0.00 NA 0.00 4.17 2.63 0.00 0.00 0.00 3.85 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 4.76 0.00 0.00 2.08 0.00 0.00 0.00 0.00 4.35 2.78 0.00 1.45 0.00 0.00 0.00 K jcn_only_AA Xpd chr2R + chr2R_17058572_17058625 chr2R_17058572_17058618 chr2R_17058531_17058571;chr2R_17058626_17059083 2.15 NA 4.65 0.00 0.00 0.00 1.89 1.79 2.60 NA 2.13 5.71 9.09 0.00 2.17 0.00 0.00 2.56 2.70 2.22 0.00 0.00 NA NA NA 2.78 NA NA 0.00 9.52 8.51 NA 2.08 0.00 NA 0.00 NA NA 3.57 0.00 NA 3.80 0.00 NA 4.44 9.09 NA 3.03 2.78 NA NA NA NA NA 2.63 NA NA 0.00 K intron_retention Cyp310a1 chr2L - chr2L_18652220_18652280 chr2L_18652219_18652220;chr2L_18652280_18652281 chr2L_18652038_18652219;chr2L_18652281_18652397 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA K intron_retention SF1,I_chr3R_13367524_13367576,I_chr3R_13367524_13367588,I_chr3R_13367524_13367760 chr3R + chr3R_13367524_13368136 chr3R_13367523_13367524;chr3R_13368136_13368137 chr3R_13367424_13367523;chr3R_13368137_13368212 8.57 9.52 11.90 0.00 4.26 6.12 8.57 10.81 9.38 16.67 16.13 11.39 20.00 14.00 7.81 20.00 11.63 9.30 11.54 12.36 5.71 8.33 8.33 13.24 11.54 0.00 8.54 14.29 1.64 10.34 7.94 5.26 1.92 14.77 13.56 0.00 11.11 9.72 7.81 9.62 1.56 9.43 6.38 5.63 0.00 9.52 7.41 5.10 8.28 7.87 9.17 7.27 6.90 5.36 6.35 8.70 9.52 5.56 K jcn_only_AD tna chr3L + chr3L_10851787_10863140 chr3L_10852155_10863140 chr3L_10863141_10863453;chr3L_10851215_10851786 0.00 NA NA 5.56 NA NA 0.00 3.23 1.96 NA NA 0.00 0.00 NA 0.00 3.03 0.00 NA 12.50 5.56 NA 0.00 0.00 0.00 NA NA NA NA NA NA NA NA NA 2.63 NA NA 0.00 0.00 NA NA NA 2.78 NA 19.05 NA NA NA NA 0.00 0.00 0.00 NA NA NA 0.00 NA NA NA N jcn_only_AD CG17760 chr2R + chr2R_8513731_8514257;chr2R_8513642_8514257 chr2R_8513482_8514257 chr2R_8514258_8514421;chr2R_8513465_8513481 0.00 NA NA 19.51 NA NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA N alternative_acceptor CG34140,CG34140_Mkp,noncoding_9561 chr3L - chr3L_184068_184131 chr3L_184073_184131 chr3L_184132_184197;chr3L_184008_184067 66.67 62.50 100.00 67.57 59.09 100.00 100.00 75.86 69.39 100.00 58.33 62.75 62.96 52.38 68.97 68.18 63.16 100.00 100.00 69.39 61.11 66.67 65.31 69.05 67.86 60.61 61.54 64.10 72.00 100.00 60.53 100.00 100.00 100.00 69.57 62.16 61.90 67.65 65.85 62.50 46.15 65.91 100.00 74.07 100.00 56.00 64.29 100.00 66.67 62.50 71.11 60.00 57.69 50.00 62.50 63.33 64.71 100.00 K intron_retention CaMKII,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,I_chr4_1071489_1071884,RI_chr4_1071489_1071968,I_chr4_1071569_1071884,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1071675_1071884 chr4_1071674_1071675;chr4_1071884_1071885 chr4_1071575_1071674;chr4_1071885_1071899 100.00 100.00 100.00 100.00 NA 100.00 96.67 96.77 97.06 NA NA 100.00 94.12 94.12 100.00 96.88 100.00 100.00 100.00 100.00 100.00 NA 100.00 88.89 100.00 100.00 100.00 NA NA NA 100.00 NA NA 100.00 100.00 NA NA NA NA 90.00 NA 100.00 93.75 NA NA NA NA 100.00 96.97 NA 100.00 100.00 NA NA 100.00 NA NA 100.00 K jcn_only_AA RpL8,I_chr3L_2587513_2587750,I_chr3L_2587600_2587750,I_chr3L_2589746_2592161 chr3L + chr3L_2587514_2587717;chr3L_2587514_2587750 chr3L_2587514_2587575 chr3L_2587500_2587513;chr3L_2587751_2587850 0.09 0.08 0.16 0.04 0.04 0.02 0.16 0.12 0.09 0.11 0.02 0.09 0.27 0.12 0.02 0.11 0.08 0.12 0.08 0.06 0.07 0.42 0.07 0.11 0.10 0.14 0.02 0.08 0.19 0.16 0.33 0.23 0.25 0.14 0.00 0.00 0.11 0.06 0.02 0.07 0.22 0.09 0.08 0.08 0.10 0.24 0.12 0.14 0.22 0.08 0.09 0.08 0.09 0.22 0.05 0.05 0.04 0.27 K jcn_only_AD CG15365,I_chrX_8950375_8950458 chrX - chrX_8950375_8950479 chrX_8950375_8950458 chrX_8950275_8950374;chrX_8950480_8950558 21.37 NA NA NA NA NA NA 36.36 15.38 NA NA 20.00 NA NA NA NA NA NA NA 42.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 19.05 NA NA NA NA NA 22.73 NA NA NA NA NA NA NA NA NA NA K alternative_acceptor RpS11,snoRNA:Me28S-C3420a,I_chr2R_8087545_8087698,I_chr2R_8087747_8088193 chr2R - chr2R_8087093_8087338 chr2R_8087095_8087338 chr2R_8087339_8087544;chr2R_8086818_8087092 99.95 99.96 99.93 99.92 100.00 99.93 99.89 99.93 99.95 100.00 99.90 99.95 99.93 99.97 99.95 99.89 99.97 99.94 99.96 99.95 99.96 100.00 99.92 99.94 99.84 99.96 99.93 100.00 99.96 99.97 99.93 99.94 99.97 99.96 99.92 99.89 99.98 99.92 99.89 99.93 99.94 99.98 99.92 99.93 99.98 99.90 99.96 100.00 99.93 99.93 99.91 100.00 99.95 99.99 99.98 99.97 99.91 99.95 K alternative_acceptor CG5367 chr2L - chr2L_10355223_10355481 chr2L_10355227_10355481 chr2L_10355482_10355868;chr2L_10355066_10355222 100.00 100.00 100.00 100.00 100.00 95.45 100.00 96.88 96.88 100.00 100.00 97.62 100.00 100.00 100.00 97.44 100.00 100.00 95.65 92.31 100.00 100.00 100.00 100.00 100.00 95.00 96.15 100.00 97.06 100.00 96.15 96.67 100.00 100.00 100.00 100.00 93.33 NA 94.74 91.89 97.22 97.56 94.44 100.00 100.00 97.73 100.00 98.18 97.92 94.74 100.00 100.00 95.00 93.33 100.00 100.00 100.00 98.88 K alternative_acceptor bip2,RI_chr4_481674_482028,RI_chr4_481674_487126,RI_chr4_483144_483680,RI_chr4_486609_487126 chr4 - chr4_481478_482130 chr4_481674_482130 chr4_482131_482954;chr4_481340_481477 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 97.73 100.00 100.00 94.74 100.00 100.00 92.86 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 97.56 96.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG3680,Pka-R1 chr3L + chr3L_20804551_20804623 chr3L_20804550_20804551;chr3L_20804623_20804624 chr3L_20804081_20804550;chr3L_20804624_20805297 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 2.56 0.00 0.00 9.52 8.20 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Caki,I_chr3R_17645303_17645375 chr3R - chr3R_17644846_17645375 chr3R_17644845_17644846;chr3R_17645375_17645376 chr3R_17644740_17644845;chr3R_17645376_17645475 9.62 6.49 11.34 0.00 14.93 9.38 9.02 9.93 9.64 15.15 5.06 11.92 14.93 12.50 8.16 21.55 7.89 5.43 12.22 5.11 6.85 26.03 5.26 9.09 4.62 6.49 4.44 8.33 25.86 5.41 9.30 18.18 15.56 11.11 9.80 9.38 6.40 8.00 6.12 21.57 0.00 10.84 11.67 12.09 6.82 11.86 11.11 16.67 9.33 13.73 11.83 11.36 9.52 4.44 12.12 9.62 8.96 16.22 N jcn_only_AA CG7203,LKR,I_chr2L_7795654_7795717 chr2L - chr2L_7794769_7795509 chr2L_7795446_7795509 chr2L_7795510_7795653;chr2L_7794592_7794768 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CycG,I_chr3R_27425071_27425214,RE_chr3R_27427953_27436598 chr3R - chr3R_27425071_27426110 chr3R_27425070_27425071;chr3R_27426110_27426111 chr3R_27424971_27425070;chr3R_27426111_27426325 0.00 0.00 0.00 0.15 0.00 0.00 0.12 0.14 0.13 0.00 0.00 0.18 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.60 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Cdep,I_chr3R_749200_749265 chr3R + chr3R_749200_749265 chr3R_749200_749253 chr3R_749100_749199;chr3R_749266_749365 100.00 100.00 100.00 97.37 100.00 95.24 100.00 97.73 100.00 100.00 94.12 97.62 100.00 100.00 100.00 98.04 100.00 96.67 92.86 100.00 95.00 95.65 100.00 96.55 95.24 100.00 97.06 100.00 100.00 100.00 96.77 100.00 97.06 100.00 100.00 95.83 100.00 100.00 100.00 97.87 100.00 97.87 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 97.50 100.00 100.00 100.00 96.55 100.00 100.00 100.00 K intron_retention CG8929 chr2R + chr2R_16214899_16214948 chr2R_16214898_16214899;chr2R_16214948_16214949 chr2R_16214792_16214898;chr2R_16214949_16215068 100.00 90.91 100.00 94.44 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 91.67 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K intron_retention sbr,RI_chrX_10731248_10731484 chrX - chrX_10728731_10728913 chrX_10728730_10728731;chrX_10728913_10728914 chrX_10728501_10728730;chrX_10728914_10728950 18.57 21.05 23.68 21.15 7.14 14.29 32.76 18.57 13.04 10.00 19.44 15.79 15.38 17.50 30.00 16.95 14.63 14.29 26.83 19.23 26.09 4.08 11.32 15.56 25.00 21.05 23.26 31.03 13.79 7.41 26.98 22.73 6.25 22.06 28.57 24.24 10.26 15.38 15.38 20.00 20.00 22.22 19.35 11.76 10.71 23.33 17.14 20.69 18.57 20.00 10.42 16.67 14.81 18.52 22.50 26.67 17.07 12.20 K multi_cassette CG11266,RI_chr2L_7033019_7033182,RI_chr2L_7033019_7034180,RI_chr2L_7033019_7034764,I_chr2L_7034274_7034764,I_chr2L_7034274_7035406,RI_chr2L_7034911_7035074,I_chr2L_7051093_7051366 chr2L + chr2L_7033019_7035406 chr2L_7033019_7034198;chr2L_7034274_7034483;chr2L_7034694_7034764;chr2L_7034913_7035406 chr2L_7034199_7034273;chr2L_7034484_7034693;chr2L_7034765_7034912 chr2L_7032919_7033018;chr2L_7035407_7035506 7.47 4.88 11.54 2.38 4.35 10.53 9.09 21.05 11.27 4.44 10.53 15.25 28.00 21.43 10.00 23.08 16.67 6.90 13.64 9.33 10.53 2.90 9.76 6.82 2.22 0.00 5.56 3.33 3.90 5.13 27.27 6.12 2.41 20.00 7.32 NA 3.92 6.25 8.89 7.00 3.61 8.86 21.05 10.81 1.98 6.10 4.65 7.63 17.31 5.56 8.33 8.57 0.00 6.25 23.81 8.11 2.94 5.97 K intron_retention CG1161,I_chr3R_1182079_1182146 chr3R + chr3R_1181959_1182146 chr3R_1181958_1181959;chr3R_1182146_1182147 chr3R_1181906_1181958;chr3R_1182147_1182246 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K alternative_donor Arp14D,RE_chrX_16445264_16446372 chrX - chrX_16443182_16443249;chrX_16443182_16443251 chrX_16443182_16443253 chrX_16442302_16443181;chrX_16443254_16443445 0.78 0.00 1.41 0.99 0.00 3.28 1.09 0.00 2.74 0.00 5.56 0.88 0.00 0.00 1.39 0.00 1.72 1.33 1.49 0.00 1.89 1.96 2.78 2.56 NA 1.49 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 2.86 4.17 0.00 0.78 1.12 0.79 0.00 NA 1.19 0.00 7.50 0.00 0.74 0.00 2.63 0.00 0.00 0.00 1.15 0.00 2.44 1.39 K intron_retention I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17181974_17182126,RI_chr3R_17182422_17182532,RI_chr3R_17183087_17183245,RI_chr3R_17183087_17183726,I_chr3R_17183481_17200781,I_chr3R_17183927_17184513,I_chr3R_17183927_17185306,RI_chr3R_17184319_17184513,I_chr3R_17184319_17185084,I_chr3R_17184319_17185284,noncoding_18168,RI_chr3R_17184792_17185306,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,RI_chr3R_17189607_17189988,I_chr3R_17190098_17190207,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,I_chr3R_17197790_17197863,RI_chr3R_17198778_17199052,RI_chr3R_17198803_17199019,RI_chr3R_17198803_17199052 chr3R - chr3R_17181974_17200781 chr3R_17181973_17181974;chr3R_17200781_17200782 chr3R_17181929_17181973;chr3R_17200782_17200881 14.29 NA NA NA NA NA NA 21.43 10.53 NA NA 11.11 NA 15.38 NA NA NA NA NA 3.85 NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 14.29 14.29 22.22 NA NA NA 6.67 NA 11.76 26.32 NA 14.29 NA NA NA NA NA NA 0.00 K intron_retention CG14438 chrX + chrX_6661156_6661216 chrX_6661155_6661156;chrX_6661216_6661217 chrX_6656169_6661155;chrX_6661217_6662371 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor cul-2,RI_chr2L_21657668_21657832,noncoding_4226,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21656588_21658556 chr2L_21656588_21657832 chr2L_21656493_21656587;chr2L_21658557_21658854 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.57 100.00 100.00 98.28 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention sec71 chr2L + chr2L_13794629_13794895 chr2L_13794628_13794629;chr2L_13794895_13794896 chr2L_13793535_13794628;chr2L_13794896_13798821 0.00 0.00 0.00 10.64 0.00 0.00 2.13 4.17 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 5.26 NA 2.38 0.00 5.56 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2389272_2395659 chrX_2389272_2389644;chrX_2389762_2392054;chrX_2392149_2392515;chrX_2392665_2393243;chrX_2393712_2395659 chrX_2389645_2389761;chrX_2392055_2392148;chrX_2392516_2392664;chrX_2393244_2393711 chrX_2389172_2389271;chrX_2395660_2395759 26.66 NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG10353,I_chrX_11775936_11778830,RI_chrX_11780885_11780988 chrX - chrX_11779138_11780988;chrX_11779315_11780988 chrX_11780885_11780988 chrX_11780989_11781085;chrX_11778831_11779137 75.00 100.00 50.00 100.00 NA NA 50.00 100.00 75.00 100.00 50.00 100.00 NA NA 50.00 25.00 NA 100.00 100.00 33.33 NA 66.67 100.00 50.00 50.00 NA NA 100.00 50.00 50.00 100.00 100.00 66.67 100.00 NA 100.00 100.00 NA 50.00 100.00 100.00 100.00 50.00 100.00 50.00 50.00 50.00 75.00 40.00 100.00 50.00 50.00 NA NA 100.00 100.00 50.00 66.67 K intron_retention CG5850,I_chr2L_9963013_9963451 chr2L - chr2L_9961615_9961728 chr2L_9961614_9961615;chr2L_9961728_9961729 chr2L_9961359_9961614;chr2L_9961729_9961775 29.41 33.33 16.22 39.58 40.00 41.67 24.24 45.00 29.79 38.46 25.00 20.00 17.65 34.62 29.17 37.04 26.67 28.00 31.82 19.72 23.08 65.69 43.18 37.14 25.00 37.50 39.39 39.39 36.00 28.57 19.35 26.47 26.87 33.33 37.50 21.05 34.43 26.47 46.15 29.55 27.27 26.79 29.41 40.00 18.00 24.32 35.48 26.67 20.00 22.73 37.84 34.78 19.35 29.03 36.36 35.00 26.47 23.68 K intron_retention CG16734,F_chr3R_5081035_5081083 chr3R + chr3R_5081032_5081083 chr3R_5081031_5081032;chr3R_5081083_5081084 chr3R_5080935_5081031;chr3R_5081084_5081183 5.50 NA NA 7.14 NA NA 6.25 4.76 18.18 NA NA 0.00 NA NA NA 12.50 0.00 NA NA 0.00 NA NA NA NA NA NA 7.69 NA NA NA 0.00 NA NA 10.53 NA NA NA NA NA 0.00 NA 4.17 NA NA NA 25.00 NA NA 21.05 NA NA NA NA NA NA 0.00 NA NA K jcn_only_AA RI_chr3L_19994894_19994949,CG7668,RI_chr3L_19995983_19996407 chr3L + chr3L_19996093_19996407 chr3L_19996093_19996402 chr3L_19995858_19996092;chr3L_19996408_19996507 84.95 84.62 79.55 80.60 85.42 84.62 79.38 85.06 84.56 88.46 89.47 88.37 76.19 76.00 91.38 80.00 78.38 87.10 87.10 83.08 93.33 91.67 83.58 90.91 85.19 88.68 86.27 89.47 89.29 94.00 78.38 96.30 88.10 82.35 90.32 87.88 85.37 78.79 79.41 90.00 84.85 87.18 73.68 83.93 86.21 84.62 86.49 78.05 83.10 88.89 94.23 80.70 NA 76.92 82.14 83.67 84.78 81.82 K jcn_only_AA cdi chr3R - chr3R_14875792_14875867 chr3R_14875795_14875867 chr3R_14875868_14875953;chr3R_14875539_14875791 66.55 61.29 75.00 67.31 80.77 64.86 65.00 62.26 64.38 65.00 NA 73.47 68.97 NA 67.57 77.14 56.00 NA 64.00 77.19 79.17 72.92 76.92 64.10 65.79 61.90 68.97 60.61 67.86 72.73 71.43 NA 60.00 76.47 57.58 75.00 69.39 50.00 61.76 56.82 NA 57.41 79.17 69.23 NA 52.38 47.62 NA 74.24 NA 72.46 58.33 NA NA 77.14 60.00 54.55 NA K cassette MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17389985_17398371;chr2R_17395228_17398371 chr2R_17395228_17397610,chr2R_17389985_17397610;chr2R_17397707_17398371 chr2R_17397611_17397706 chr2R_17389891_17389984;chr2R_17398372_17398565 96.77 94.74 96.77 100.00 93.10 96.67 100.00 100.00 94.03 95.83 100.00 100.00 100.00 100.00 100.00 96.77 100.00 97.14 95.83 96.77 95.83 92.96 98.15 90.91 97.06 95.65 97.73 97.78 82.50 96.67 100.00 95.24 96.30 97.67 95.83 82.93 94.12 89.80 95.52 94.34 94.44 98.18 94.44 97.22 88.89 96.77 100.00 95.24 100.00 100.00 100.00 95.00 96.00 97.22 100.00 96.77 97.78 100.00 K jcn_only_AD Ntf-2,I_chrX_20906749_20909772 chrX + chrX_20907492_20907565 chrX_20907498_20907565 chrX_20907566_20907664;chrX_20907429_20907491 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.84 100.00 100.00 99.76 99.61 100.00 99.67 100.00 99.60 100.00 100.00 100.00 100.00 100.00 99.74 100.00 100.00 99.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.70 100.00 99.72 100.00 100.00 100.00 100.00 100.00 99.78 100.00 99.63 99.81 100.00 99.72 100.00 99.10 100.00 100.00 99.78 100.00 99.69 K intron_retention cmet chr2L - chr2L_11267047_11267150 chr2L_11267046_11267047;chr2L_11267150_11267151 chr2L_11266982_11267046;chr2L_11267151_11268052 13.39 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N intron_retention foi,I_chr3L_8524905_8524976 chr3L + chr3L_8523587_8523659 chr3L_8523586_8523587;chr3L_8523659_8523660 chr3L_8523525_8523586;chr3L_8523660_8524249 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 NA 29.41 100.00 100.00 NA 63.16 NA NA NA NA 100.00 NA 59.62 100.00 100.00 NA 41.67 100.00 100.00 52.63 NA NA NA 100.00 100.00 100.00 NA NA NA NA NA 65.22 100.00 NA 100.00 NA NA NA 100.00 NA NA 100.00 K mutually_exclusive B4,REI_chr2L_13509793_13534906,EI_chr2L_13513471_13534906,I_chr2L_13513474_13549131,CG15638,CG9263,I_chr2L_13547133_13549131,I_chr2L_13547162_13547692,I_chr2L_13547304_13549131 chr2L - chr2L_13509793_13534906,chr2L_13535027_13549131 chr2L_13509793_13512959,chr2L_13513474_13549131 chr2L_13534907_13535026 chr2L_13512960_13513473 chr2L_13509741_13509792;chr2L_13549132_13549231 90.67 88.89 86.36 69.23 83.33 91.18 94.12 60.87 93.42 97.18 96.00 90.00 81.25 87.50 89.47 89.74 84.62 100.00 80.00 91.11 96.67 96.90 95.06 91.49 90.00 82.61 89.29 91.18 94.29 98.00 96.77 94.74 99.61 89.36 93.75 87.50 88.89 95.45 90.62 85.71 97.87 82.35 94.44 83.33 96.72 90.00 94.03 98.43 90.74 92.11 82.61 76.47 89.29 97.67 90.00 84.62 90.67 97.83 K alternative_donor CG16936,RI_chr2R_20655101_20655166,I_chr2R_20660319_20660496 chr2R - chr2R_20655101_20655161;chr2R_20655101_20655620;chr2R_20655101_20655476 chr2R_20655101_20655166 chr2R_20655001_20655100;chr2R_20655621_20655665 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.81 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.29 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 3.70 3.45 0.00 0.00 1.61 0.00 2.22 8.33 0.00 0.00 1.37 0.00 0.00 0.73 0.00 0.98 1.20 2.13 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.99 K alternative_last_exon CrebB-17A,I_chrX_18261213_18269281,I_chrX_18265640_18266060,I_chrX_18265982_18266063 chrX + chrX_18266466_18269875 chrX_18266466_18267066 chrX_18269876_18271387 chrX_18267067_18267488 chrX_18266156_18266465 98.70 98.70 98.21 98.31 97.50 98.15 98.08 98.44 99.23 98.36 100.00 99.07 96.88 97.50 98.31 97.78 97.06 97.62 97.37 99.34 97.44 99.19 99.16 98.96 98.51 97.50 98.75 98.78 98.86 98.86 97.92 98.31 99.14 98.77 98.57 100.00 99.38 100.00 100.00 99.17 98.04 99.18 97.37 98.53 99.04 98.88 98.65 99.06 99.11 98.57 98.90 97.92 98.70 100.00 98.04 100.00 98.75 98.95 K alternative_acceptor Utx chr2L - chr2L_10274091_10274164 chr2L_10274106_10274164 chr2L_10274165_10274868;chr2L_10273966_10274090 41.38 42.86 35.29 46.43 63.64 50.00 39.29 45.71 46.15 NA 46.67 45.45 35.71 38.89 36.84 41.38 31.25 47.06 47.83 37.14 42.86 NA 25.93 48.00 35.71 26.32 55.00 NA 36.36 36.36 47.62 NA NA 41.46 50.00 75.00 36.36 NA 35.71 57.14 40.00 39.47 35.00 46.67 NA 35.71 50.00 25.00 44.44 25.81 50.00 35.71 NA NA 36.36 46.15 29.41 NA K jcn_only_AA shep,RI_chr3L_5163541_5194164,I_chr3L_5177084_5177314,I_chr3L_5193467_5212049 chr3L - chr3L_5155644_5156066;chr3L_5155732_5156066 chr3L_5155711_5156066 chr3L_5156067_5156229;chr3L_5155556_5155643 94.94 95.65 95.04 86.76 93.33 94.32 93.92 95.10 93.75 94.67 96.23 95.25 91.08 95.02 95.49 94.94 93.50 94.50 93.54 94.58 95.43 95.70 93.04 92.22 92.61 91.81 97.31 97.87 93.64 93.57 95.14 94.38 95.60 92.20 94.89 91.78 94.30 96.00 96.65 96.51 91.93 95.41 96.08 97.67 95.08 95.78 96.00 95.08 94.75 92.04 92.98 95.35 95.56 98.15 95.24 94.41 92.00 96.53 K intron_retention CG4774 chr3R - chr3R_21511223_21511288 chr3R_21511222_21511223;chr3R_21511288_21511289 chr3R_21510956_21511222;chr3R_21511289_21511424 0.00 0.00 2.94 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD kst,I_chr3L_3367008_3367514 chr3L + chr3L_3367216_3367514;chr3L_3366963_3367514;chr3L_3367008_3367514;chr3L_3366774_3367514 chr3L_3367011_3367514 chr3L_3367515_3367614 40.69 45.70 39.24 35.39 30.51 23.13 55.11 56.70 43.70 40.43 30.20 44.36 48.10 51.74 35.57 52.27 37.78 61.03 39.13 34.30 35.06 54.24 38.99 45.82 52.20 63.50 47.91 54.17 45.32 44.03 38.25 40.22 47.67 38.68 37.20 41.18 50.53 46.63 40.69 5.42 36.46 43.47 39.92 54.34 51.34 33.42 34.65 32.50 40.00 35.69 39.80 45.10 40.33 41.50 44.23 40.27 47.30 38.28 K alternative_acceptor CG11148,F_chr4_876482_880932,I_chr4_880982_881065,I_chr4_882005_882418,RI_chr4_886921_887162 chr4 - chr4_880982_881065 chr4_881008_881065 chr4_881066_881165;chr4_880961_880981 98.46 96.00 100.00 98.46 100.00 100.00 98.21 98.53 97.59 100.00 100.00 98.36 100.00 100.00 97.37 100.00 100.00 96.97 97.78 97.26 100.00 100.00 96.97 100.00 100.00 100.00 96.97 100.00 95.65 100.00 95.74 96.43 95.65 97.18 94.44 94.74 96.30 96.15 96.55 100.00 100.00 98.67 100.00 100.00 100.00 97.06 100.00 100.00 98.63 98.08 100.00 96.30 100.00 96.55 97.73 93.94 98.28 98.08 K intron_retention Ac3,I_chr2L_21635211_21637957,I_chr2L_21643253_21646594 chr2L + chr2L_21635036_21635091 chr2L_21635035_21635036;chr2L_21635091_21635092 chr2L_21634995_21635035;chr2L_21635092_21635210 48.53 NA NA NA NA NA 76.92 NA 47.06 NA NA NA NA NA NA 45.45 NA NA NA 38.46 NA 60.00 57.14 NA 54.55 NA 66.67 NA 86.67 NA 28.57 NA NA 36.36 NA NA 26.67 46.15 NA 17.65 NA 30.77 NA 70.59 NA 20.00 NA 60.00 53.33 NA NA 50.00 NA NA NA NA NA NA K intron_retention CG14614,REI_chrX_21856047_21856229,RI_chrX_21856896_21857109 chrX - chrX_21855265_21855326 chrX_21855264_21855265;chrX_21855326_21855327 chrX_21853919_21855264;chrX_21855327_21855508 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Hsc70-5 chr2R - chr2R_10140998_10141057 chr2R_10140997_10140998;chr2R_10141057_10141058 chr2R_10140857_10140997;chr2R_10141058_10142162 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.50 0.74 0.66 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9328 chr2L + chr2L_20813358_20813432 chr2L_20813357_20813358;chr2L_20813432_20813433 chr2L_20813156_20813357;chr2L_20813433_20814050 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.36 0.00 0.00 0.41 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 1.51 0.00 0.00 0.00 K jcn_only_AD CG1646,I_chr3R_24640561_24640869,I_chr3R_24641816_24641874 chr3R + chr3R_24639729_24640869 chr3R_24640561_24640869 chr3R_24640870_24640969;chr3R_24639603_24639728 0.62 0.00 0.00 0.00 0.00 0.00 0.62 0.53 0.29 3.70 0.00 0.33 1.06 0.00 0.00 0.00 0.00 0.74 0.00 0.32 0.00 2.27 1.75 0.83 4.11 1.10 3.14 1.46 1.73 1.09 0.00 0.78 0.53 0.50 0.75 6.67 2.54 0.44 1.59 1.61 0.89 0.00 0.00 1.95 0.00 1.76 0.49 0.00 0.00 2.35 1.52 2.00 0.74 0.83 0.61 1.06 1.06 0.00 K intron_retention CG13567,I_chr2R_19932706_19933121 chr2R - chr2R_19924438_19924497 chr2R_19924437_19924438;chr2R_19924497_19924498 chr2R_19924206_19924437;chr2R_19924498_19924663 0.00 0.00 NA 5.41 NA NA 8.00 0.00 0.00 NA 0.00 6.25 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 6.45 NA NA 0.00 0.00 NA NA 7.41 0.00 NA 0.00 NA 0.00 0.00 NA 3.85 NA NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 3.23 NA K mutually_exclusive CRMP,I_chr3R_1401648_1403314 chr3R + chr3R_1401648_1402757,chr3R_1402982_1403314 chr3R_1401648_1401896,chr3R_1402136_1403314 chr3R_1402758_1402981 chr3R_1401897_1402135 chr3R_1401548_1401647;chr3R_1403315_1403414 20.00 16.67 40.00 5.88 NA NA 20.00 16.67 16.67 61.54 NA NA 25.00 NA NA NA 20.00 NA NA 10.00 NA 16.67 46.15 12.50 40.00 20.00 12.50 NA NA 16.67 33.33 25.00 25.00 NA 16.67 40.00 16.67 16.67 28.57 14.29 33.33 16.67 NA NA 12.50 28.57 NA 20.00 11.11 11.11 25.00 37.50 16.67 25.00 40.00 22.22 25.00 NA N intron_retention Trc8 chr3R - chr3R_25325222_25326440 chr3R_25325221_25325222;chr3R_25326440_25326441 chr3R_25325094_25325221;chr3R_25326441_25326615 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 77.27 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor vsg,I_chr3L_9707724_9708265 chr3L + chr3L_9707496_9707605 chr3L_9707500_9707605 chr3L_9707606_9707723;chr3L_9707406_9707495 93.00 93.27 93.64 94.59 91.49 93.71 94.35 92.44 94.08 92.16 94.57 92.14 93.84 89.94 90.87 93.52 92.73 94.57 92.61 92.04 95.20 92.92 91.25 93.55 92.75 90.37 95.24 92.45 90.79 92.16 93.81 91.23 91.45 93.68 90.00 90.38 94.62 96.49 94.81 90.91 92.66 92.58 92.06 95.18 93.26 92.47 93.55 89.33 94.39 95.51 93.33 96.77 91.67 96.88 91.19 93.00 95.35 93.97 K intron_retention Lasp,I_chr3L_16671761_16673911,R_chr3L_16672970_16673911,RI_chr3L_16674471_16704042 chr3L - chr3L_16673033_16673911 chr3L_16673032_16673033;chr3L_16673911_16673912 chr3L_16671908_16673032;chr3L_16673912_16674011 1.37 0.93 0.95 1.32 1.05 2.91 3.56 2.24 2.01 0.00 1.44 2.19 1.62 2.40 1.47 2.15 2.45 1.64 1.90 1.61 2.22 1.59 1.19 1.87 1.30 1.86 1.46 2.10 0.73 0.85 1.12 0.00 0.20 1.14 0.80 0.68 0.87 1.48 0.48 1.16 0.29 1.98 0.00 0.44 0.00 0.57 1.62 0.23 1.69 1.43 1.37 0.00 0.00 2.38 1.47 1.04 1.67 0.16 K intron_retention Fmr1,I_chr3R_5934794_5935245,I_chr3R_5934801_5935537 chr3R - chr3R_5929325_5929394 chr3R_5929324_5929325;chr3R_5929394_5929395 chr3R_5927298_5929324;chr3R_5929395_5929469 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention isopeptidase-T-3 chr2R + chr2R_15559747_15559798 chr2R_15559746_15559747;chr2R_15559798_15559799 chr2R_15559411_15559746;chr2R_15559799_15560102 17.45 19.05 20.00 24.24 14.29 NA 33.33 23.33 27.27 NA NA 16.13 33.33 NA NA 26.32 NA 14.29 19.05 11.43 0.00 0.00 0.00 NA 14.29 16.67 21.43 38.46 11.76 6.25 13.79 33.33 3.77 33.33 17.39 13.33 6.25 14.29 6.25 15.38 16.67 24.14 NA 18.18 16.00 17.50 29.41 25.00 29.17 30.77 11.11 NA NA 18.75 13.04 20.00 NA 17.65 K alternative_donor bowl,RI_chr2L_3772695_3773616 chr2L + chr2L_3771785_3772460;chr2L_3771755_3772460 chr2L_3771874_3772460 chr2L_3772461_3772694;chr2L_3771707_3771754 18.18 NA 20.00 22.22 NA NA 27.27 22.22 11.11 NA NA NA NA 14.29 NA 14.29 NA NA NA 18.18 NA 25.00 12.50 NA 40.00 NA NA 42.86 NA 14.29 NA NA 16.67 18.18 NA NA 33.33 NA NA 30.00 NA 12.50 NA NA NA NA NA NA 18.18 NA NA NA NA NA 16.67 NA NA 14.29 K cassette PMCA,I_chr4_371836_372509,I_chr4_373671_374568,I_chr4_376108_379519 chr4 - chr4_371836_372509 chr4_371836_372211;chr4_372454_372509 chr4_372212_372453 chr4_371736_371835;chr4_372510_372609 100.00 100.00 98.68 95.65 100.00 100.00 99.43 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 99.38 98.92 98.39 100.00 99.24 100.00 98.21 100.00 100.00 97.50 98.00 98.68 96.00 100.00 100.00 99.14 100.00 100.00 100.00 100.00 94.74 97.73 100.00 100.00 100.00 100.00 100.00 100.00 98.82 100.00 100.00 100.00 100.00 97.80 96.88 100.00 100.00 100.00 100.00 100.00 96.30 96.77 100.00 K cassette Nop60B,RI_chr2R_20063248_20063455,I_chr2R_20063248_20063949,F_chr2R_20073291_20073744 chr2R + chr2R_20063248_20063949 chr2R_20063248_20063455;chr2R_20063715_20063949 chr2R_20063456_20063714 chr2R_20063148_20063247;chr2R_20063950_20064049 100.00 100.00 100.00 98.87 100.00 100.00 99.69 99.72 99.69 100.00 99.57 100.00 100.00 100.00 99.67 100.00 100.00 99.62 99.59 99.58 100.00 99.77 99.84 99.82 100.00 100.00 100.00 100.00 100.00 100.00 99.62 100.00 99.72 100.00 100.00 99.68 100.00 99.82 99.86 100.00 99.57 100.00 99.50 99.73 99.71 100.00 100.00 99.58 99.83 99.81 100.00 99.65 99.86 100.00 100.00 100.00 100.00 99.68 K jcn_only_AD RpL15 chr3LHet + chr3LHet_2397859_2398127;chr3LHet_2397925_2398127;chr3LHet_2397992_2398127;chr3LHet_2398060_2398127;chr3LHet_2397841_2398127;chr3LHet_2398002_2398127;chr3LHet_2397820_2398127;chr3LHet_2398053_2398127 chr3LHet_2398018_2398127 chr3LHet_2398128_2398454;chr3LHet_2397802_2397819 2.08 10.81 1.39 0.54 6.25 4.35 7.69 0.81 4.23 3.12 2.86 1.75 2.38 9.38 1.54 3.92 0.00 5.45 0.74 1.11 2.56 0.00 14.29 4.35 22.73 4.26 18.52 1.29 3.29 1.79 0.00 0.93 0.00 1.43 0.00 5.81 8.00 NA 17.39 0.00 1.10 1.48 0.00 0.16 1.04 0.95 4.55 0.32 1.22 22.22 7.69 13.04 0.24 8.70 1.71 6.25 7.14 0.12 K alternative_acceptor mthl10 chr3L - chr3L_335170_335244 chr3L_335200_335244 chr3L_335245_335300;chr3L_335101_335169 1.81 3.45 1.59 1.79 0.00 1.54 2.56 4.31 4.35 6.25 0.00 3.88 3.92 2.17 1.67 1.64 2.70 3.70 1.82 2.02 0.00 0.00 0.00 NA NA 5.00 6.25 NA 0.00 0.00 2.15 0.00 0.00 4.12 3.85 0.00 0.00 0.00 6.90 2.38 0.00 3.16 2.27 6.98 2.04 0.00 0.00 1.09 0.91 NA 4.76 0.00 NA 5.00 3.17 0.00 0.00 1.54 K intron_retention CG7324,I_chr3L_21335553_21335702,I_chr3L_21340055_21342206 chr3L - chr3L_21335237_21335293 chr3L_21335236_21335237;chr3L_21335293_21335294 chr3L_21334675_21335236;chr3L_21335294_21335552 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K intron_retention CG1598 chr2R - chr2R_3426920_3426982 chr2R_3426919_3426920;chr2R_3426982_3426983 chr2R_3426824_3426919;chr2R_3426983_3427133 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 1.92 0.00 0.00 0.00 0.00 0.00 1.57 0.00 2.63 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG5706,I_chr3R_20078025_20078083 chr3R - chr3R_20078025_20078087 chr3R_20078025_20078083 chr3R_20077925_20078024;chr3R_20078088_20078118 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 1.82 0.00 0.00 1.64 1.37 0.00 0.00 0.00 2.22 0.00 0.00 1.23 0.00 2.22 0.00 0.00 1.45 0.00 0.00 0.00 0.00 1.45 0.00 0.00 K intron_retention Keap1 chr3R - chr3R_12901109_12901224 chr3R_12901108_12901109;chr3R_12901224_12901225 chr3R_12900903_12901108;chr3R_12901225_12901907 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA 0.00 NA 0.00 NA 2.94 0.00 0.00 0.00 NA 0.00 6.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RI_chrX_7172561_7252693,CG1677,I_chrX_7178792_7252693,unc-119,RI_chrX_7183298_7184274 chrX - chrX_7183712_7183777 chrX_7183711_7183712;chrX_7183777_7183778 chrX_7183539_7183711;chrX_7183778_7184428 0.00 0.00 0.00 5.56 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 4.35 0.00 NA 0.00 4.76 NA 0.00 0.00 6.45 0.00 0.00 0.00 5.88 NA NA NA NA NA 0.00 10.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA NA 0.00 0.00 NA K alternative_last_exon RI_chr3R_5165997_5180143,CG33936,noncoding_15544,I_chr3R_5167726_5180143,RI_chr3R_5183458_5183705 chr3R + chr3R_5167726_5180143 chr3R_5167726_5167941 chr3R_5180144_5180805 chr3R_5167942_5168213 chr3R_5167626_5167725 91.94 92.59 89.19 95.33 90.00 93.75 97.17 98.91 97.47 90.00 95.12 98.35 96.92 97.64 90.00 98.50 95.38 95.00 95.56 94.32 80.00 71.43 92.96 91.43 87.10 95.89 80.00 56.52 91.67 93.62 88.61 71.43 70.27 97.35 91.94 93.62 44.44 68.75 55.56 91.82 86.76 91.11 97.83 92.59 79.17 95.95 86.96 95.24 98.18 85.29 93.59 94.74 85.00 72.00 94.52 82.14 66.67 91.67 K intron_retention CG3907,I_chr2R_19907866_19907906,I_chr2R_19909065_19909249,I_chr2R_19909692_19909755 chr2R - chr2R_19907845_19907906 chr2R_19907844_19907845;chr2R_19907906_19907907 chr2R_19907766_19907844;chr2R_19907907_19908006 1.04 1.12 3.33 2.98 0.00 1.32 0.71 0.52 1.04 0.00 1.32 1.32 0.00 2.22 0.00 2.94 1.23 0.00 0.00 1.27 2.27 0.00 2.44 2.35 3.85 3.81 3.92 2.70 4.00 0.00 1.61 0.00 3.33 1.91 0.00 0.00 0.00 0.00 0.00 0.88 0.00 1.42 1.33 0.00 0.00 0.00 0.00 0.00 2.17 1.92 0.95 1.47 0.00 0.00 1.80 0.00 0.00 1.61 K intron_retention glo,I_chr3R_7643675_7643727,REI_chr3R_7644679_7644932,RI_chr3R_7644683_7644880,I_chr3R_7647556_7647628 chr3R - chr3R_7643061_7643727 chr3R_7643060_7643061;chr3R_7643727_7643728 chr3R_7642916_7643060;chr3R_7643728_7643827 3.57 4.81 3.41 12.70 2.33 2.44 7.32 8.18 7.58 3.57 2.60 5.59 5.26 5.45 2.68 4.73 5.06 0.00 4.08 5.63 2.99 2.36 3.08 3.57 3.70 1.77 5.71 3.61 3.03 3.26 0.00 4.82 6.67 4.88 5.68 9.33 4.59 3.33 3.17 5.81 2.35 3.28 6.02 2.70 5.56 3.38 2.63 5.84 4.33 2.88 4.44 2.90 2.53 2.38 3.10 2.04 1.75 4.83 K alternative_donor Slh,CR_chr2L_2491440_2491508 chr2L - chr2L_2491443_2491518 chr2L_2491443_2491512 chr2L_2490733_2491442;chr2L_2491519_2491608 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG6805 chr2R + chr2R_12894564_12894637 chr2R_12894563_12894564;chr2R_12894637_12894638 chr2R_12894294_12894563;chr2R_12894638_12895109 80.00 77.97 82.61 84.42 80.00 73.02 87.01 84.21 76.97 63.16 72.22 85.16 53.85 84.91 78.87 87.10 85.00 87.10 82.81 84.57 64.56 56.67 80.28 79.71 84.09 87.32 79.41 78.95 78.38 77.78 87.27 80.43 82.35 82.11 69.57 85.48 73.85 80.00 75.95 76.47 80.00 79.82 83.02 71.43 77.55 86.59 75.71 91.89 85.00 68.75 78.08 70.00 83.87 80.00 82.02 74.60 79.55 82.05 K jcn_only_AA CG1407,RI_chr2R_5918919_5919093,I_chr2R_5918925_5919213,RI_chr2R_5918952_5919084,RI_chr2R_5918952_5919093 chr2R - chr2R_5918925_5919093 chr2R_5918952_5919093 chr2R_5919094_5919184;chr2R_5918852_5918924 75.83 71.43 70.73 58.50 83.91 79.37 74.80 70.16 77.48 80.95 83.33 79.37 89.53 70.13 72.00 73.94 80.00 68.38 78.23 74.77 77.32 86.11 73.96 70.09 77.78 84.91 72.32 87.50 78.79 75.47 71.90 62.50 78.38 75.56 81.63 94.00 79.67 73.20 66.67 79.02 70.00 76.82 79.22 69.00 82.22 61.63 68.48 86.36 75.83 71.29 68.48 77.01 69.57 66.67 81.34 70.00 81.74 84.62 K intron_retention Rab5,I_chr2L_2361586_2364794 chr2L - chr2L_2360570_2360632 chr2L_2360569_2360570;chr2L_2360632_2360633 chr2L_2360460_2360569;chr2L_2360633_2360801 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.21 0.50 0.00 0.00 0.27 0.00 0.00 0.40 0.27 0.00 1.86 0.27 0.28 1.02 3.14 0.55 0.00 4.71 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.44 0.00 0.00 0.00 0.19 0.00 0.28 0.00 0.34 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_244368_244443 chr4_244367_244368;chr4_244443_244444 chr4_244183_244367;chr4_244444_244512 94.12 97.83 91.84 94.81 96.97 97.62 97.26 96.33 94.83 71.43 96.00 95.15 93.85 91.23 98.28 95.18 92.16 92.31 94.59 95.54 97.14 84.09 89.74 92.45 94.12 100.00 98.28 100.00 85.71 91.11 78.26 92.86 96.97 98.00 96.15 70.83 89.66 95.83 90.91 91.67 85.00 99.03 92.98 90.24 92.86 93.48 87.10 94.87 96.92 88.89 92.59 85.71 96.43 94.44 97.14 89.47 93.18 95.65 K jcn_only_AA msps,I_chr3R_11877071_11877796 chr3R + chr3R_11885098_11885185;chr3R_11885098_11885182 chr3R_11885098_11885206 chr3R_11884965_11885097;chr3R_11885207_11885406 40.00 28.57 NA 40.00 NA NA 34.38 50.00 56.82 23.81 NA 36.36 NA NA 42.86 38.10 NA NA NA 50.00 39.13 34.21 37.68 33.33 28.00 NA 51.61 NA 40.00 50.00 NA NA 45.00 61.54 26.92 28.12 41.54 36.59 36.00 41.03 NA 50.00 NA 35.56 63.64 30.00 53.85 45.00 51.61 34.15 28.57 32.26 54.55 48.57 23.81 40.48 50.00 NA K mutually_exclusive CPTI,I_chr2R_6358255_6358734,I_chr2R_6358255_6359122,RI_chr2R_6358779_6358944,I_chr2R_6360956_6365128 chr2R - chr2R_6358255_6358944,chr2R_6359011_6359122 chr2R_6358255_6358718,chr2R_6358779_6359122 chr2R_6358945_6359010 chr2R_6358719_6358778 chr2R_6358234_6358254;chr2R_6359123_6359222 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.45 100.00 97.62 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG1407,RI_chr2R_5918919_5919093,I_chr2R_5918925_5919213,RI_chr2R_5918952_5919084,RI_chr2R_5918952_5919093 chr2R - chr2R_5918925_5919093 chr2R_5918925_5919084 chr2R_5918852_5918924;chr2R_5919094_5919184 25.00 20.83 23.53 15.49 23.08 25.00 35.29 19.61 26.53 25.00 29.41 30.00 NA 19.05 20.00 20.59 42.86 18.18 33.33 28.57 27.27 21.43 28.00 17.86 41.67 25.00 42.11 66.67 NA 30.77 24.24 NA NA 23.81 36.36 NA 33.33 24.00 25.00 15.38 36.36 24.49 25.00 21.43 NA 7.69 25.00 NA 22.92 12.50 27.59 30.00 28.57 26.32 21.74 5.56 31.82 NA K intron_retention homer chr2L - chr2L_6722431_6723192 chr2L_6722430_6722431;chr2L_6723192_6723193 chr2L_6722142_6722430;chr2L_6723193_6723254 4.88 9.09 0.00 0.00 4.55 NA 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 0.00 15.15 7.41 0.00 10.53 0.00 4.76 16.00 0.00 0.00 0.00 9.52 6.67 6.67 5.56 9.09 4.55 NA 12.50 2.78 5.26 15.00 5.00 6.06 2.94 7.41 NA 6.25 5.88 0.00 NA 6.25 NA NA 7.32 5.56 6.45 0.00 NA NA 0.00 0.00 6.67 NA K jcn_only_AD kst,I_chr3L_3367008_3367514 chr3L + chr3L_3367216_3367514;chr3L_3366963_3367514;chr3L_3367011_3367514;chr3L_3366774_3367514 chr3L_3367008_3367514 chr3L_3367515_3367614 0.53 1.95 0.00 0.52 0.00 0.65 0.73 1.29 0.48 0.71 0.50 0.92 0.00 0.39 0.29 0.20 0.37 0.47 0.93 0.00 0.00 0.85 1.26 1.09 0.00 1.46 0.00 1.04 1.48 0.37 0.40 0.37 0.00 0.85 0.00 1.60 0.53 0.56 0.32 0.00 1.56 0.16 1.14 0.91 0.60 0.74 0.44 1.25 0.17 0.74 1.34 1.31 0.00 1.00 0.27 1.01 0.00 0.66 K alternative_donor CG11790,CG11791 chr3R + chr3R_20876091_20876902;chr3R_20876340_20876902 chr3R_20875669_20876902 chr3R_20876903_20877278;chr3R_20875600_20875668 20.59 26.47 7.89 20.59 28.57 9.68 18.00 10.00 15.38 32.00 7.41 11.86 26.83 5.71 11.43 10.71 7.14 28.57 15.22 8.42 3.70 16.13 28.57 20.00 12.50 10.00 12.50 28.57 30.77 22.22 8.51 28.00 22.58 8.82 23.08 19.05 34.29 24.00 20.59 36.07 45.16 13.43 10.34 34.15 42.11 32.56 30.00 46.51 6.76 35.56 30.56 18.52 48.39 18.18 19.57 33.33 37.78 60.32 K alternative_acceptor CG4829,I_chrX_16717240_16717547 chrX + chrX_16717240_16717547;chrX_16717240_16717889 chrX_16717240_16717619 chrX_16717140_16717239;chrX_16717890_16718151 96.13 95.43 97.31 98.43 72.81 67.51 95.73 96.91 96.61 88.43 96.73 95.16 94.63 96.40 94.69 97.76 97.03 95.63 96.94 97.26 95.53 95.11 95.02 94.89 94.21 93.47 92.51 85.71 96.83 97.49 92.51 97.63 95.94 97.95 94.30 98.47 96.47 96.18 96.93 93.36 95.19 97.29 96.63 96.84 94.52 95.96 95.47 96.33 96.66 93.01 94.23 95.18 97.51 97.06 97.19 96.13 97.57 98.39 K alternative_acceptor CG6838,I_chr3L_22708171_22708254,I_chr3L_22709306_22709668 chr3L - chr3L_22708171_22708254 chr3L_22708190_22708254 chr3L_22708255_22708354;chr3L_22708071_22708170 98.90 97.06 97.62 100.00 97.62 100.00 98.28 98.33 99.06 100.00 100.00 97.50 97.73 100.00 98.28 100.00 100.00 100.00 100.00 98.25 100.00 100.00 97.78 95.18 98.00 100.00 98.80 96.67 96.77 100.00 97.30 100.00 98.11 98.25 100.00 100.00 98.90 98.55 98.95 98.97 100.00 97.98 100.00 97.18 98.57 100.00 98.90 97.62 96.59 100.00 98.72 100.00 100.00 98.51 98.00 100.00 97.16 100.00 K intron_retention mav,RI_chr4_645290_646129 chr4 - chr4_644240_644301 chr4_644239_644240;chr4_644301_644302 chr4_643850_644239;chr4_644302_645289 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 98.77 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 97.22 98.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG42550 chr3R - chr3R_3826590_3826647 chr3R_3826595_3826647 chr3R_3826648_3826710;chr3R_3826527_3826589 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 97.96 NA 100.00 100.00 97.96 NA NA 100.00 100.00 NA 100.00 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 97.06 NA 100.00 NA K intron_retention Pkc98E chr3R + chr3R_24870160_24870221 chr3R_24870159_24870160;chr3R_24870221_24870222 chr3R_24870089_24870159;chr3R_24870222_24871440 3.33 NA NA NA NA NA NA NA 6.67 NA NA NA NA NA 30.77 NA NA NA NA 0.00 NA 16.67 NA NA NA 21.43 NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA K jcn_only_AA CycA,RE_chr3L_11825347_11826111 chr3L - chr3L_11825344_11825973 chr3L_11825347_11825973 chr3L_11825974_11826431;chr3L_11825247_11825343 85.04 88.72 81.06 84.53 92.17 87.50 88.50 88.59 81.88 84.35 83.48 84.19 84.87 85.71 85.38 87.50 90.00 87.50 83.33 86.25 86.49 84.31 85.42 85.88 86.75 84.62 85.03 70.97 88.42 87.18 85.19 91.76 83.01 81.60 85.32 86.76 80.00 84.09 81.30 79.31 84.38 85.04 86.54 78.91 82.26 84.80 83.91 87.11 86.41 80.00 89.63 86.79 79.49 82.95 87.74 84.62 75.00 85.80 K mutually_exclusive Gs1l,I_chr2L_4456517_4456723 chr2L - chr2L_4455739_4456113,chr2L_4456333_4456385 chr2L_4455739_4455856,chr2L_4456076_4456385 chr2L_4456114_4456332 chr2L_4455857_4456075 chr2L_4455221_4455738;chr2L_4456386_4456516 31.43 24.62 32.53 48.91 23.08 30.95 15.09 26.79 22.56 34.69 25.61 20.32 20.27 22.86 21.55 47.17 27.03 26.58 25.97 24.26 29.17 38.27 36.42 30.97 24.76 27.27 48.94 48.57 29.69 39.05 35.10 36.67 41.03 26.36 31.46 52.38 32.69 31.51 30.73 29.28 33.82 24.74 31.43 29.03 40.21 33.70 33.33 36.62 26.24 40.19 33.79 27.71 35.16 33.33 20.87 33.33 35.51 40.83 K intron_retention Adk3 chr3R - chr3R_6714066_6714787 chr3R_6714065_6714066;chr3R_6714787_6714788 chr3R_6713005_6714065;chr3R_6714788_6715357 0.00 NA NA 0.00 NA NA NA 0.00 10.53 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA K alternative_donor CG4552,I_chr2L_1129503_1129818 chr2L + chr2L_1129503_1129818 chr2L_1129506_1129818 chr2L_1129819_1129918;chr2L_1129403_1129502 98.63 98.00 100.00 100.00 96.43 100.00 98.33 100.00 98.81 100.00 97.14 98.68 96.55 100.00 97.96 98.36 100.00 100.00 98.00 100.00 100.00 98.00 98.28 97.62 96.97 100.00 96.49 97.44 100.00 100.00 97.44 97.14 100.00 98.44 100.00 100.00 97.50 97.50 97.26 98.63 100.00 100.00 94.12 100.00 97.44 100.00 97.14 100.00 97.62 100.00 100.00 100.00 97.14 100.00 100.00 97.22 98.21 98.04 N alternative_donor sxc,I_chr2R_1203985_1205289,I_chr2R_1208121_1213310,I_chr2R_1213177_1213308 chr2R + chr2R_1194858_1194977;chr2R_1194919_1194977 chr2R_1194785_1194977 chr2R_1194978_1195157;chr2R_1194775_1194784 0.00 NA NA 0.00 NA NA NA 11.11 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA N alternative_donor mth chr3L - chr3L_345886_346102 chr3L_345886_346098 chr3L_345375_345885;chr3L_346103_346245 28.96 NA NA NA NA NA 40.00 NA 26.67 NA NA NA NA NA NA 31.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 23.08 NA NA NA NA NA NA NA NA NA K intron_retention CG12034 chr3L + chr3L_3219345_3219430 chr3L_3219344_3219345;chr3L_3219430_3219431 chr3L_3219092_3219344;chr3L_3219431_3220938 5.26 9.52 7.14 8.33 0.00 0.00 0.00 6.06 11.43 NA 11.76 10.26 0.00 0.00 6.06 0.00 0.00 0.00 10.71 8.51 NA 26.67 0.00 0.00 30.77 33.33 16.67 NA 5.26 8.33 3.57 0.00 2.86 0.00 5.26 16.67 8.00 11.11 11.11 0.00 10.53 0.00 NA 5.26 0.00 2.63 12.50 0.00 10.26 8.00 7.41 NA 0.00 0.00 4.35 0.00 0.00 2.38 K jcn_only_AA RI_chr2R_12912984_12913058,RhoGEF2 chr2R + chr2R_12922514_12922850;chr2R_12922514_12923159 chr2R_12922514_12923162 chr2R_12922340_12922513;chr2R_12923163_12923912 0.00 0.00 0.00 0.00 0.00 6.45 0.00 0.00 0.00 0.00 NA 1.69 0.00 0.00 0.00 0.00 2.44 0.00 0.00 2.00 NA 1.12 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 2.33 0.00 0.00 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 1.67 4.55 0.00 NA 0.00 NA 0.00 2.44 K intron_retention Reps,I_chr2L_11105525_11105656 chr2L - chr2L_11106012_11106066 chr2L_11106011_11106012;chr2L_11106066_11106067 chr2L_11105657_11106011;chr2L_11106067_11106618 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.52 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG11376,I_chr2L_100704_100835 chr2L + chr2L_99347_99658 chr2L_99346_99347;chr2L_99658_99659 chr2L_98527_99346;chr2L_99659_99723 100.00 100.00 100.00 95.24 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.24 100.00 100.00 100.00 100.00 NA 100.00 93.75 100.00 100.00 100.00 100.00 NA NA 96.15 100.00 93.75 NA NA 88.89 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 K jcn_only_AD Fas1,E_chr3R_12458491_12460799,I_chr3R_12458491_12460807,I_chr3R_12460976_12461267 chr3R + chr3R_12460105_12461267;chr3R_12460817_12461267 chr3R_12458491_12461267 chr3R_12461268_12461367 100.00 NA 90.48 NA 100.00 NA NA NA 97.06 NA NA NA NA NA NA NA NA NA NA 97.30 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA K alternative_acceptor Pka-R2,I_chr2R_5911755_5913333,I_chr2R_5911755_5913354,I_chr2R_5911803_5913333 chr2R - chr2R_5911708_5913333;chr2R_5911755_5913333 chr2R_5911803_5913333 chr2R_5913334_5913352;chr2R_5911703_5911707 50.00 18.18 45.45 55.56 60.00 50.00 57.14 40.00 54.55 28.57 38.46 53.85 71.43 66.67 53.33 52.94 41.67 66.67 40.00 50.00 50.00 50.00 50.00 NA NA 85.71 62.50 NA NA 50.00 47.37 NA NA 58.82 50.00 71.43 38.46 NA 75.00 28.57 NA 52.38 54.55 38.46 NA NA NA 30.00 60.87 NA 50.00 42.86 NA NA 64.29 NA NA NA K jcn_only_AA CG5261,I_chr2L_7428611_7428877 chr2L + chr2L_7428680_7428778;chr2L_7428680_7428877 chr2L_7428680_7428925 chr2L_7428612_7428679;chr2L_7428926_7428977 1.35 0.68 2.36 1.78 0.00 2.83 0.62 0.61 0.74 1.35 0.81 0.48 1.43 1.33 1.91 0.00 0.00 0.00 1.27 1.20 0.89 2.36 0.60 2.55 2.41 2.20 1.48 3.19 1.71 1.59 0.76 4.26 1.83 1.28 1.30 0.81 1.45 0.65 1.46 0.76 0.00 1.92 0.00 0.92 4.24 0.88 1.40 2.99 1.69 2.02 0.65 1.69 1.77 4.85 0.79 0.00 2.33 2.60 K intron_retention CG18094,swm chr2L + chr2L_19493383_19493665 chr2L_19493382_19493383;chr2L_19493665_19493666 chr2L_19493252_19493382;chr2L_19493666_19493957 19.52 NA NA 19.05 NA NA 19.05 14.29 25.00 NA NA 15.15 NA NA NA 15.38 36.36 NA NA 20.69 NA 20.00 15.38 NA NA NA 0.00 26.32 NA 26.09 14.29 NA 41.67 25.00 0.00 15.00 11.11 20.00 NA 25.00 33.33 19.05 NA 30.77 NA 12.50 23.53 25.00 24.14 18.75 12.50 23.53 NA NA NA NA 14.29 NA K jcn_only_AA CG17331,RI_chr2L_16731891_16731942 chr2L - chr2L_16731869_16731942 chr2L_16731891_16731942 chr2L_16731943_16732042;chr2L_16731791_16731868 0.17 0.00 0.00 0.00 0.43 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.33 0.24 0.00 0.00 0.55 0.21 0.47 0.00 0.23 0.80 0.00 0.48 0.40 0.00 0.34 0.00 0.46 0.00 0.00 0.65 0.00 0.41 0.37 0.17 0.44 0.98 0.70 0.54 0.00 0.87 0.00 0.89 0.23 0.00 0.44 0.66 0.00 0.82 0.18 0.00 K jcn_only_AD Rab5,I_chr2L_2361586_2364444,RI_chr2L_2361586_2364627,I_chr2L_2361586_2364794 chr2L - chr2L_2361586_2364640;chr2L_2361586_2364480;chr2L_2361586_2365060;chr2L_2361586_2364302;chr2L_2361586_2364594;chr2L_2361586_2364312;chr2L_2361586_2364889 chr2L_2361586_2364836 chr2L_2361486_2361585;chr2L_2365061_2365065 0.31 0.00 1.55 1.37 1.76 0.00 1.59 1.36 1.49 1.02 1.14 0.00 0.00 0.00 0.00 0.31 0.54 1.69 0.89 0.52 0.00 0.00 0.00 0.69 0.00 0.99 0.00 0.00 0.00 0.56 0.48 1.18 1.57 0.56 0.00 1.47 0.00 0.00 0.00 0.91 1.81 0.25 2.74 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.99 0.00 0.46 0.00 0.48 0.50 K cassette CG9795 chr3R + chr3R_147770_148952 chr3R_147770_148069;chr3R_148218_148952 chr3R_148070_148217 chr3R_147567_147769;chr3R_148953_149344 0.00 0.00 0.00 2.94 0.00 NA 4.00 0.00 0.00 4.17 NA 2.94 6.67 0.00 0.00 0.00 0.00 NA 0.00 2.50 NA 2.04 5.00 3.45 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 1.27 0.00 0.00 3.33 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 2.70 4.76 0.00 0.00 0.00 0.00 0.00 4.00 0.00 K intron_retention Trf,I_chr2L_8073126_8073167 chr2L + chr2L_8073126_8073196 chr2L_8073125_8073126;chr2L_8073196_8073197 chr2L_8073026_8073125;chr2L_8073197_8073267 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 10.71 0.00 2.17 4.44 0.00 0.00 0.00 2.47 0.00 0.00 1.49 0.00 0.00 0.00 0.00 5.63 1.32 0.00 5.88 0.00 0.00 0.00 0.00 2.78 1.56 0.00 0.00 1.43 0.00 0.00 0.00 0.00 1.59 0.00 0.00 1.49 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 1.98 K intron_retention CG31997,I_chr4_175592_176390 chr4 - chr4_175774_176390 chr4_175773_175774;chr4_176390_176391 chr4_175653_175773;chr4_176391_176490 0.00 0.00 0.00 0.53 0.00 0.00 1.53 1.20 0.27 0.00 0.00 2.80 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 1.25 0.00 0.00 0.00 2.04 0.00 0.77 2.26 0.00 0.00 0.87 0.00 0.79 1.92 0.00 K alternative_donor RhoGAPp190,I_chrX_17544272_17544863,I_chrX_17546225_17546531 chrX - chrX_17536864_17537055 chrX_17536864_17537046 chrX_17536811_17536863;chrX_17537056_17537280 94.28 94.12 89.47 100.00 100.00 93.33 94.12 93.75 96.77 100.00 92.31 96.55 100.00 91.67 92.86 100.00 90.91 90.91 100.00 93.75 100.00 95.45 96.30 94.74 NA 100.00 92.31 88.89 93.75 100.00 100.00 100.00 95.65 90.00 91.67 100.00 100.00 100.00 100.00 87.88 94.74 93.75 92.86 93.75 94.44 92.86 94.12 92.31 96.30 100.00 95.24 92.31 88.89 90.00 100.00 90.00 100.00 93.75 K cassette CG1021,I_chr3R_2217711_2231099,I_chr3R_2217711_2231390,RI_chr3R_2217711_2231463,I_chr3R_2217742_2219453,I_chr3R_2218465_2231390,RI_chr3R_2218465_2231463,I_chr3R_2218682_2231463,I_chr3R_2219634_2231390,I_chr3R_2231383_2231463 chr3R - chr3R_2218465_2231463;chr3R_2217711_2231099;chr3R_2217711_2231463;chr3R_2218682_2231463 chr3R_2217711_2219453,chr3R_2218682_2219453,chr3R_2218465_2219453;chr3R_2219634_2231099,chr3R_2219634_2231463 chr3R_2219454_2219633 chr3R_2217642_2217710;chr3R_2231464_2231490 84.00 90.00 89.29 88.24 85.71 92.31 80.00 91.67 85.42 85.71 85.71 75.56 82.35 90.00 92.31 74.29 94.74 81.82 84.62 87.30 92.00 77.01 84.75 92.50 87.10 75.00 79.25 76.47 72.22 80.00 84.62 73.33 61.54 80.85 85.71 90.91 77.78 88.24 84.09 76.47 75.00 80.33 88.89 81.25 66.04 78.00 89.74 72.62 81.25 86.67 84.00 84.00 72.58 75.00 75.68 90.62 80.65 86.73 N cassette Dscam,F_chr2R_3219886_3228832,F_chr2R_3226043_3235353,F_chr2R_3227948_3235353,F_chr2R_3228738_3235353,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3219886_3235353;chr2R_3232857_3235353 chr2R_3232857_3232989,chr2R_3219886_3232989;chr2R_3233281_3235353 chr2R_3232990_3233280 chr2R_3219786_3219885;chr2R_3235354_3235453 100.00 61.11 65.00 41.67 100.00 100.00 63.64 58.82 100.00 100.00 100.00 100.00 50.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 21.05 100.00 100.00 100.00 100.00 100.00 100.00 40.00 100.00 100.00 100.00 40.74 100.00 100.00 100.00 100.00 100.00 100.00 61.29 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 75.00 100.00 55.56 100.00 100.00 NA 69.23 50.00 100.00 100.00 K intron_retention lt,I_chr2L_22817840_22817968,RI_chr2L_22820498_22823377,RI_chr2L_22823579_22823640,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22820498_22831505 chr2L_22820497_22820498;chr2L_22831505_22831506 chr2L_22820398_22820497;chr2L_22831506_22831546 2.63 4.35 4.84 17.95 0.00 1.89 6.60 6.82 6.56 0.00 8.70 4.65 0.00 7.27 6.38 7.22 6.06 0.00 2.38 2.25 0.00 6.12 4.92 6.12 6.90 0.00 4.76 22.73 11.54 0.00 0.00 0.00 2.00 3.25 3.92 2.63 0.00 0.00 2.70 2.90 0.00 4.63 2.99 0.00 0.00 0.00 0.00 6.02 3.40 0.00 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor ird5,CG10185 chr3R - chr3R_11873877_11873963 chr3R_11873902_11873963 chr3R_11873964_11874533;chr3R_11873080_11873876 92.31 90.00 92.31 100.00 100.00 70.00 84.21 95.00 96.00 NA 100.00 93.33 90.91 87.50 91.67 93.33 100.00 100.00 91.67 92.31 81.82 100.00 91.67 88.89 NA 100.00 100.00 NA 77.78 NA 92.31 90.91 88.89 95.00 100.00 100.00 81.82 90.00 100.00 100.00 87.50 95.83 83.33 100.00 91.67 92.31 100.00 83.33 88.46 90.00 91.67 NA 100.00 87.50 100.00 100.00 90.91 94.74 K jcn_only_AA shep,RI_chr3L_5163541_5194164,I_chr3L_5177084_5177314,I_chr3L_5193467_5212049 chr3L - chr3L_5155732_5156066;chr3L_5155711_5156066 chr3L_5155644_5156066 chr3L_5156067_5156229;chr3L_5155556_5155643 0.00 0.00 0.00 0.00 0.61 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.26 0.00 0.00 0.00 0.88 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Nup153,I_chrX_16495232_16495296 chrX + chrX_16501033_16501965 chrX_16501032_16501033;chrX_16501965_16501966 chrX_16500895_16501032;chrX_16501966_16502033 2.15 3.80 1.56 4.00 0.00 0.00 5.26 3.66 3.12 0.00 3.39 2.94 4.44 3.57 0.00 4.92 4.88 0.00 5.66 1.25 3.92 2.15 4.44 3.77 2.50 0.00 5.61 4.60 1.00 1.48 0.00 0.00 2.44 4.60 2.22 3.88 0.00 2.90 1.32 0.46 0.76 3.01 0.00 1.90 0.48 1.49 1.72 1.11 3.54 0.00 4.63 1.82 2.04 1.60 2.94 1.75 3.42 1.14 K intron_retention Mtor chr2R + chr2R_7747377_7747434 chr2R_7747376_7747377;chr2R_7747434_7747435 chr2R_7747045_7747376;chr2R_7747435_7747568 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 3.95 4.35 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.58 2.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10080 chr2R + chr2R_17517589_17517991 chr2R_17517588_17517589;chr2R_17517991_17517992 chr2R_17517568_17517588;chr2R_17517992_17518052 95.99 92.86 100.00 100.00 88.89 93.33 88.24 91.67 95.00 100.00 NA 95.24 90.00 92.86 100.00 91.67 90.00 100.00 90.00 100.00 91.67 88.89 95.24 93.75 100.00 100.00 93.33 100.00 96.15 100.00 100.00 96.15 96.15 88.89 93.33 100.00 94.74 100.00 100.00 100.00 100.00 96.15 100.00 94.74 95.83 100.00 93.33 97.22 95.24 94.44 100.00 91.67 100.00 93.33 100.00 100.00 93.33 100.00 K alternative_acceptor Tif-IA,RI_chr2L_22250854_22257652 chr2L + chr2L_22253333_22253424;chr2L_22253333_22253386 chr2L_22253333_22253421 chr2L_22253256_22253332;chr2L_22253425_22253685 59.14 55.70 54.29 54.17 48.57 57.38 63.36 59.87 61.94 54.55 62.86 62.04 60.00 56.41 60.49 58.79 55.38 61.36 57.73 60.75 56.82 59.38 59.14 57.14 56.52 54.55 60.00 55.56 53.85 56.52 63.56 62.16 53.66 62.89 60.87 57.41 61.11 60.94 57.14 60.00 54.39 60.31 60.53 61.97 57.14 61.63 56.52 58.49 59.73 60.56 57.89 62.30 54.55 61.36 56.32 59.42 60.26 50.75 K intron_retention Mgat1 chr2R - chr2R_16448259_16448318 chr2R_16448258_16448259;chr2R_16448318_16448319 chr2R_16448154_16448258;chr2R_16448319_16448749 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.70 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K intron_retention foxo,RI_chr3R_9883151_9883462,I_chr3R_9907161_9907218 chr3R + chr3R_9882747_9883462 chr3R_9882746_9882747;chr3R_9883462_9883463 chr3R_9882717_9882746;chr3R_9883463_9883562 90.91 NA NA 90.91 NA NA 90.91 92.86 96.00 NA NA 68.18 100.00 90.00 NA 77.78 86.67 80.00 90.91 100.00 NA NA 87.50 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 88.89 NA NA NA NA 93.33 NA NA NA NA NA NA 78.57 NA NA NA NA NA 100.00 NA NA NA K jcn_only_AA tefu,I_chr3R_11060517_11060585 chr3R - chr3R_11060517_11060585 chr3R_11060522_11060585 chr3R_11060586_11060685;chr3R_11060417_11060516 98.59 97.78 100.00 98.55 97.06 100.00 97.47 97.89 98.63 NA 100.00 98.55 100.00 100.00 100.00 98.44 95.92 100.00 100.00 100.00 100.00 100.00 97.67 98.04 100.00 100.00 93.88 NA NA 100.00 98.11 95.45 100.00 96.00 86.36 100.00 96.55 100.00 100.00 98.28 NA 99.01 100.00 NA NA 96.77 97.30 100.00 96.72 100.00 100.00 96.43 96.30 NA 97.06 96.15 97.83 100.00 K intron_retention RpS5a,I_chrX_17037805_17038646,I_chrX_17037805_17039048,I_chrX_17037805_17040830,snoRNA:Psi28S-1192d,snoRNA:Psi28S-1192c,snoRNA:Psi28S-1192b,snoRNA:Psi28S-1192a,I_chrX_17038786_17039048,snoRNA:Psi28S-2876,snoRNA:Psi18S-1854c,snoRNA:Psi28S-1135f,snoRNA:Psi18S-1854b,snoRNA:Psi28S-1135e,snoRNA:Psi18S-1854a,snoRNA:Psi28S-1135d,snoRNA:Psi28S-1135c,snoRNA:Psi28S-1135b,snoRNA:Psi28S-1135a chrX - chrX_17037805_17039048 chrX_17037804_17037805;chrX_17039048_17039049 chrX_17037705_17037804;chrX_17039049_17039148 26.79 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.06 60.00 NA NA NA NA NA 28.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA K intron_retention CG9715 chr3L + chr3L_16842873_16842934 chr3L_16842872_16842873;chr3L_16842934_16842935 chr3L_16842735_16842872;chr3L_16842935_16845499 0.00 0.00 0.00 4.00 0.00 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 8.51 7.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG4511,RI_chr3R_6680759_6681015 chr3R + chr3R_6680755_6681015 chr3R_6680759_6681015 chr3R_6681016_6681115;chr3R_6680659_6680754 1.01 0.95 0.83 0.55 0.00 0.83 1.40 1.99 0.74 2.00 2.02 1.60 1.49 1.12 0.64 0.79 0.91 1.10 2.94 1.01 0.00 1.27 0.93 0.00 0.00 0.78 0.90 1.27 1.20 1.28 2.01 1.18 0.76 1.62 0.00 1.43 0.83 0.00 0.90 2.05 0.00 1.56 1.10 1.14 0.00 1.82 1.43 0.95 0.43 1.11 1.04 0.00 1.72 1.52 1.65 0.98 0.81 0.75 K jcn_only_AD CG2017 chr3R - chr3R_1686127_1687891;chr3R_1686127_1688092;chr3R_1686127_1687510 chr3R_1686127_1687468 chr3R_1685454_1686126;chr3R_1688093_1688097 18.00 13.85 19.44 30.65 17.24 14.29 21.54 32.26 13.74 10.29 23.91 23.48 18.00 22.81 25.00 30.77 22.45 25.76 23.88 16.55 15.52 12.14 11.03 15.97 20.00 23.75 15.62 12.77 23.28 9.09 24.19 22.22 15.75 17.58 22.47 19.63 10.73 7.83 15.52 16.00 16.67 18.46 24.44 20.16 9.21 20.63 12.64 18.35 32.63 30.28 23.77 10.00 20.00 16.85 17.39 13.39 9.52 9.30 K intron_retention Nplp2,I_chr3L_13349726_13349896 chr3L + chr3L_13349947_13350107 chr3L_13349946_13349947;chr3L_13350107_13350108 chr3L_13349897_13349946;chr3L_13350108_13350349 98.49 98.20 98.70 98.47 98.38 98.87 97.41 98.72 98.21 97.52 99.04 98.19 98.76 97.92 98.18 98.11 98.67 98.84 98.87 97.98 99.21 99.50 98.68 97.48 98.67 98.90 96.57 94.25 98.52 97.98 98.63 98.54 98.57 99.02 98.90 98.32 96.27 98.93 98.63 98.98 96.53 99.16 98.63 97.89 99.16 98.49 98.84 99.31 98.82 98.19 98.47 95.93 97.98 98.37 98.47 98.01 98.17 98.35 K intron_retention borr chr2L - chr2L_9252351_9252634 chr2L_9252350_9252351;chr2L_9252634_9252635 chr2L_9251942_9252350;chr2L_9252635_9253116 0.00 2.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 5.88 0.00 0.00 4.76 0.00 0.00 4.11 0.00 6.98 1.20 0.00 3.85 0.00 3.92 0.00 0.00 5.13 0.00 0.00 0.00 0.00 2.63 2.38 0.00 0.00 2.47 3.39 0.00 0.00 0.00 8.33 0.00 3.85 3.23 6.25 0.00 0.00 0.00 0.00 3.92 2.53 0.00 3.12 6.12 0.00 K alternative_acceptor Sin3A,RI_chr2R_8468118_8468706,I_chr2R_8473578_8480185,RI_chr2R_8479951_8480233 chr2R - chr2R_8468118_8468706 chr2R_8468136_8468706 chr2R_8468707_8468806;chr2R_8468018_8468117 81.63 81.82 88.89 80.28 77.78 88.24 43.48 88.33 85.88 86.49 70.00 82.19 88.24 77.78 82.93 74.07 82.14 89.47 81.40 75.61 74.36 87.84 71.70 82.09 89.58 72.97 86.96 83.33 61.22 69.23 80.56 86.21 75.00 86.11 78.72 91.84 85.29 68.09 91.25 86.49 77.42 81.63 82.86 75.86 60.53 74.58 76.60 69.44 86.84 85.71 84.00 70.59 82.93 70.59 75.56 81.67 80.00 73.33 K alternative_acceptor mav,RI_chr4_645290_646129 chr4 - chr4_645563_645616 chr4_645568_645616 chr4_645617_646242;chr4_645398_645562 100.00 100.00 NA 100.00 NA NA 94.12 94.44 95.45 NA NA 91.67 100.00 90.00 NA 100.00 100.00 NA 100.00 94.44 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 90.00 NA 100.00 100.00 90.00 NA 88.89 NA NA 100.00 NA 93.75 NA NA NA 100.00 NA NA NA K alternative_acceptor RFI_chr2L_3030576_3030666,GABPI chr2L + chr2L_3031894_3032009 chr2L_3031894_3031953 chr2L_3031000_3031893;chr2L_3032010_3032255 100.00 98.82 98.44 98.88 100.00 100.00 100.00 99.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.75 100.00 98.51 100.00 99.38 98.33 100.00 100.00 100.00 100.00 98.28 98.65 100.00 100.00 100.00 98.70 98.91 100.00 100.00 100.00 100.00 99.08 100.00 98.97 100.00 99.01 100.00 100.00 100.00 100.00 99.30 98.88 99.13 99.12 98.92 99.01 98.25 98.51 100.00 98.61 100.00 100.00 100.00 K intron_retention CG18815 chr3L + chr3L_11622699_11623566 chr3L_11622698_11622699;chr3L_11623566_11623567 chr3L_11622681_11622698;chr3L_11623567_11623845 94.74 93.75 80.00 94.87 93.75 88.89 100.00 96.67 97.14 100.00 92.86 100.00 100.00 93.75 83.33 86.21 90.00 94.44 88.89 86.00 81.25 89.47 96.00 94.74 100.00 100.00 100.00 NA 92.31 100.00 95.24 86.96 88.57 82.05 100.00 100.00 95.00 100.00 95.83 96.67 94.74 95.56 81.25 91.67 91.18 93.75 94.74 100.00 90.62 100.00 87.50 94.44 100.00 94.74 95.00 94.44 96.15 88.89 K intron_retention CG32479,CG34056,CG34057 chr3L + chr3L_891777_891834 chr3L_891776_891777;chr3L_891834_891835 chr3L_891548_891776;chr3L_891835_893534 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.15 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Eb1,I_chr2R_2642491_2642549 chr2R + chr2R_2642350_2642403 chr2R_2642349_2642350;chr2R_2642403_2642404 chr2R_2642210_2642349;chr2R_2642404_2642486 0.95 0.73 1.32 0.20 0.90 0.99 1.42 1.24 1.26 0.00 2.02 0.72 1.60 0.00 1.33 1.30 0.62 0.34 1.61 0.00 1.83 1.80 2.37 0.96 4.19 6.21 4.12 4.64 15.49 0.00 1.36 1.55 0.00 0.76 0.90 0.00 0.40 0.66 0.62 0.47 4.13 1.75 0.36 0.91 0.00 1.33 1.55 1.04 0.95 0.38 1.47 0.00 0.00 0.00 1.09 0.00 0.29 0.93 K intron_retention CG8121,RI_chr3R_5183458_5183705 chr3R + chr3R_5161562_5161621 chr3R_5161561_5161562;chr3R_5161621_5161622 chr3R_5161423_5161561;chr3R_5161622_5161751 0.00 0.00 2.38 1.47 0.00 0.00 6.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 2.38 0.00 5.26 6.90 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 9.76 0.00 0.00 1.27 0.00 10.34 2.53 0.00 0.83 0.00 0.00 0.00 0.00 4.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG17508,RI_chr2R_1496995_1497120 chr2R + chr2R_1496337_1496517;chr2R_1496341_1496517;chr2R_1496303_1496517 chr2R_1496288_1496517 chr2R_1496518_1496994;chr2R_1496153_1496287 0.00 0.00 0.00 0.00 0.00 0.00 1.46 0.48 0.00 0.00 0.00 0.84 0.00 0.00 0.00 0.40 1.47 3.41 1.18 0.48 0.00 0.00 0.00 1.92 1.30 0.79 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.88 0.00 1.39 0.00 0.00 0.00 1.13 0.00 0.81 0.00 0.00 0.00 0.79 0.00 0.00 0.00 K intron_retention KrT95D,I_chr3R_19825840_19825904 chr3R - chr3R_19825840_19825901 chr3R_19825839_19825840;chr3R_19825901_19825902 chr3R_19825740_19825839;chr3R_19825902_19826502 0.91 0.00 1.80 5.06 0.00 0.00 1.32 2.50 0.92 1.77 4.44 2.14 0.00 1.41 1.57 0.00 0.00 0.91 0.00 1.08 0.00 1.14 1.46 0.00 0.69 0.00 3.05 5.62 1.01 0.50 1.57 0.00 0.84 1.56 1.16 1.31 1.47 0.00 0.72 1.51 1.53 1.68 0.00 0.00 0.85 1.61 0.66 0.44 0.00 0.93 2.03 0.00 0.00 1.63 0.00 0.00 0.00 0.00 K intron_retention CG8735,noncoding_5214 chr2R - chr2R_4487207_4487315 chr2R_4487206_4487207;chr2R_4487315_4487316 chr2R_4486977_4487206;chr2R_4487316_4487363 0.00 0.00 7.41 0.00 NA 3.23 0.00 0.00 7.84 0.00 NA 3.28 7.41 0.00 3.85 0.00 NA 0.00 0.00 2.50 6.67 0.00 0.00 0.00 0.00 4.55 3.57 1.82 14.63 0.00 7.32 0.00 7.14 6.67 0.00 4.84 1.72 0.00 1.54 3.12 6.12 4.44 0.00 1.72 2.08 2.35 0.00 2.86 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Klc,I_chr3L_12741779_12743062,I_chr3L_12741783_12742943,I_chr3L_12741838_12743062 chr3L - chr3L_12741783_12743132 chr3L_12741783_12743062 chr3L_12741738_12741782;chr3L_12743133_12743162 98.47 99.22 99.39 98.12 98.41 95.96 98.45 97.67 99.08 100.00 98.70 100.00 98.29 99.28 99.30 98.47 97.20 98.44 100.00 99.12 98.78 100.00 98.24 98.00 97.67 98.28 97.73 100.00 97.53 95.24 98.65 98.61 98.00 98.86 98.78 98.10 98.31 100.00 98.29 97.64 97.87 97.90 100.00 97.97 100.00 99.33 98.16 97.73 99.17 99.18 97.44 98.40 100.00 98.61 99.41 100.00 98.79 97.73 K intron_retention tra2,REFI_chr2R_10491644_10491701 chr2R - chr2R_10491629_10491701 chr2R_10491628_10491629;chr2R_10491701_10491702 chr2R_10491620_10491628;chr2R_10491702_10491801 17.65 NA 23.08 18.18 NA NA 4.55 24.00 3.85 NA NA 17.86 26.67 30.77 25.00 8.70 NA 12.50 NA 14.63 6.67 22.22 26.32 40.00 NA 19.05 53.85 42.86 NA NA 14.29 13.33 NA NA 18.75 17.65 NA NA 13.33 16.67 20.00 13.04 23.08 NA 6.25 16.67 21.05 14.29 18.52 NA 10.53 NA NA NA 14.29 14.29 17.65 14.29 K jcn_only_AD CG4389,I_chr2L_9576230_9576665 chr2L - chr2L_9576230_9576665;chr2L_9576230_9576517 chr2L_9576230_9576635 chr2L_9576130_9576229;chr2L_9576666_9576755 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 K multi_cassette CG1021,I_chr3R_2217711_2231099,I_chr3R_2217711_2231390,RI_chr3R_2217711_2231463,I_chr3R_2217742_2218601,I_chr3R_2217742_2219453,I_chr3R_2218465_2231390,RI_chr3R_2218465_2231463,I_chr3R_2218682_2231463,I_chr3R_2219634_2231390,RI_chr3R_2231206_2231270,I_chr3R_2231271_2231390,I_chr3R_2231285_2231463,I_chr3R_2231383_2231463 chr3R - chr3R_2218465_2231463 chr3R_2218465_2218601;chr3R_2218682_2219453;chr3R_2219634_2231463 chr3R_2218602_2218681;chr3R_2219454_2219633 chr3R_2218365_2218464;chr3R_2231464_2231490 75.00 NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA 60.00 NA NA NA NA NA 50.00 60.00 NA NA NA 100.00 100.00 50.00 NA 60.00 NA 75.00 100.00 75.00 NA 100.00 NA NA 80.00 50.00 80.00 NA 75.00 NA 80.00 NA 42.86 50.00 75.00 80.00 NA NA NA NA 75.00 NA 50.00 K alternative_donor Hsc70Cb chr3L + chr3L_14030212_14030577 chr3L_14030237_14030577 chr3L_14030578_14030850;chr3L_14030158_14030211 87.50 89.29 82.76 82.35 66.67 94.12 97.14 89.83 85.06 94.12 80.00 92.00 88.89 83.33 79.31 91.18 78.95 72.00 78.05 87.67 80.00 87.50 86.67 95.00 100.00 94.74 100.00 91.67 94.64 76.67 75.00 80.65 88.24 86.00 96.00 96.00 94.74 75.00 81.82 97.37 96.00 83.33 86.11 87.50 87.88 84.38 70.83 90.91 87.50 85.71 79.31 100.00 94.12 92.86 80.00 94.74 82.61 90.24 K intron_retention CG42518,F_chr2R_14055227_14055470 chr2R + chr2R_14055644_14055712 chr2R_14055643_14055644;chr2R_14055712_14055713 chr2R_14055278_14055643;chr2R_14055713_14055885 1.89 1.23 2.44 5.17 0.00 0.00 3.39 5.10 1.33 2.99 3.51 2.54 1.45 0.00 3.49 0.00 0.00 3.28 2.22 1.26 0.00 2.70 3.41 0.00 0.00 3.75 5.06 2.86 12.90 4.00 3.09 1.89 0.00 0.00 3.28 6.06 1.32 1.47 1.16 2.36 3.45 2.45 1.47 2.30 0.00 5.04 1.12 1.94 1.32 1.82 5.63 1.96 0.00 0.00 1.09 0.00 0.00 0.87 K intron_retention mud chrX + chrX_14150134_14150517 chrX_14150133_14150134;chrX_14150517_14150518 chrX_14150034_14150133;chrX_14150518_14150790 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.51 0.00 3.85 0.00 2.44 0.00 5.56 0.00 2.78 0.00 0.00 2.82 4.44 0.00 0.00 12.50 NA 8.70 11.11 0.00 0.00 0.00 2.70 0.00 3.57 2.00 0.00 3.57 0.00 2.38 0.00 0.00 2.38 0.00 0.00 2.13 2.33 0.00 2.50 0.00 6.25 3.12 4.55 0.00 4.44 0.00 0.00 K intron_retention endoA chr3R + chr3R_14732743_14732921 chr3R_14732742_14732743;chr3R_14732921_14732922 chr3R_14732332_14732742;chr3R_14732922_14734172 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 1.18 0.00 0.00 4.00 0.00 0.00 0.00 2.94 6.67 0.00 2.38 2.13 0.00 1.14 0.00 0.00 0.00 0.00 0.00 3.45 4.76 0.00 0.00 0.00 0.00 0.00 2.33 0.00 2.78 2.90 0.00 0.00 0.00 0.00 NA 5.00 0.00 0.00 0.00 K intron_retention CG31523,I_chr3R_294322_304799,RI_chr3R_298911_304354 chr3R - chr3R_294127_294185 chr3R_294126_294127;chr3R_294185_294186 chr3R_293936_294126;chr3R_294186_294321 0.00 0.00 0.28 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.37 2.41 0.00 0.83 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.37 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3R_17846331_17846423,noncoding_18278 chr3R - chr3R_17849634_17849713 chr3R_17849633_17849634;chr3R_17849713_17849714 chr3R_17849419_17849633;chr3R_17849714_17849945 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention MB8.chr3R.pasa.66,CG1091,I_chr3R_2910029_2910096,RI_chr3R_2910490_2910686,RI_chr3R_2911041_2911135,RI_chr3R_2946518_2946663 chr3R - chr3R_2910029_2910096 chr3R_2910028_2910029;chr3R_2910096_2910097 chr3R_2909929_2910028;chr3R_2910097_2910162 100.00 92.31 100.00 92.86 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 92.31 100.00 NA 100.00 100.00 96.00 90.91 NA 100.00 93.33 NA NA 100.00 90.91 92.86 92.86 100.00 100.00 100.00 94.74 90.91 100.00 100.00 100.00 94.12 94.12 91.67 95.24 100.00 91.67 100.00 100.00 100.00 80.00 93.75 100.00 93.33 100.00 100.00 NA 100.00 100.00 100.00 88.89 K intron_retention pit,RI_chr3R_17861471_17861539 chr3R + chr3R_17861471_17861539 chr3R_17861470_17861471;chr3R_17861539_17861540 chr3R_17861465_17861470;chr3R_17861540_17861639 95.34 100.00 90.91 95.24 NA 100.00 92.31 95.45 89.66 NA 88.89 100.00 91.67 91.67 92.86 95.65 100.00 NA 93.33 90.00 NA 92.86 92.86 100.00 100.00 100.00 100.00 94.44 100.00 94.12 100.00 92.31 95.24 100.00 90.91 100.00 90.91 NA 100.00 85.71 100.00 100.00 NA 90.00 100.00 95.45 92.86 95.45 96.88 100.00 100.00 100.00 92.31 NA 90.91 93.75 94.74 95.83 K intron_retention CG17528,I_chr2R_706735_711443,I_chr2R_707374_711443 chr2R - chr2R_705236_705289 chr2R_705235_705236;chr2R_705289_705290 chr2R_704947_705235;chr2R_705290_705439 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4709,RI_chr2L_9954545_9954595 chr2L + chr2L_9954535_9954595 chr2L_9954534_9954535;chr2L_9954595_9954596 chr2L_9954445_9954534;chr2L_9954596_9954601 16.91 NA NA NA NA NA NA NA 7.14 NA NA NA NA NA NA 26.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG5991 chr3R + chr3R_19876703_19877411;chr3R_19876703_19877421 chr3R_19876703_19877425 chr3R_19876688_19876702;chr3R_19877426_19877477 0.00 NA NA 0.00 NA NA 3.23 1.85 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 4.35 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 K jcn_only_AD osa,I_chr3R_13542657_13542834,I_chr3R_13542657_13543500,I_chr3R_13542657_13543662,I_chr3R_13542657_13543668 chr3R - chr3R_13542657_13543968;chr3R_13542657_13543500;chr3R_13542657_13543662;chr3R_13542657_13543668;chr3R_13542657_13543677 chr3R_13542657_13542834 chr3R_13542557_13542656;chr3R_13543969_13544017 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.45 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.56 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 2.01 0.00 1.41 0.87 0.00 0.00 1.11 0.43 0.00 0.60 0.00 0.79 0.00 0.00 3.03 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor tsh,I_chr2L_21829859_21830276 chr2L + chr2L_21829859_21833370 chr2L_21829859_21830276 chr2L_21829759_21829858;chr2L_21833371_21833470 4.26 2.00 4.44 4.44 2.94 2.94 5.41 4.62 3.53 5.88 3.23 4.92 8.00 5.26 2.27 3.77 2.86 8.33 2.38 2.94 3.45 6.45 4.62 1.72 3.57 2.44 6.38 22.73 6.67 4.44 3.33 4.35 7.69 4.48 4.88 5.00 3.39 1.67 4.00 2.94 5.26 2.94 2.86 4.44 0.00 2.50 4.17 8.82 4.71 3.12 3.37 4.26 2.94 0.00 4.26 5.26 4.35 6.25 K intron_retention CG12163,I_chr3R_1068862_1077145,RI_chr3R_1069977_1077139 chr3R - chr3R_1069977_1077145 chr3R_1069976_1069977;chr3R_1077145_1077146 chr3R_1069877_1069976;chr3R_1077146_1077239 67.86 71.43 64.52 86.36 77.78 84.62 86.21 73.08 77.19 52.38 77.78 53.33 58.33 94.12 78.38 78.95 83.33 93.75 93.33 70.83 50.00 89.19 64.29 62.50 76.47 68.18 70.59 50.00 59.38 65.38 67.86 10.53 47.92 76.47 67.86 24.49 73.08 62.07 56.25 42.86 20.00 75.00 85.00 60.00 16.13 17.86 NA 54.72 82.93 NA 74.07 65.00 29.41 NA 87.50 40.00 NA 30.00 K alternative_donor Unc-76,RI_chrX_1983640_1985001,I_chrX_2002576_2003165 chrX + chrX_1975693_1985001 chrX_1983640_1985001 chrX_1985002_1985100;chrX_1974778_1975692 0.71 0.83 0.63 0.49 0.83 0.74 1.28 0.49 0.69 0.81 0.97 1.04 1.05 0.81 0.68 0.65 0.95 0.94 0.71 1.10 0.75 0.65 0.50 0.68 0.81 0.85 1.38 6.25 1.05 0.45 0.70 0.70 0.48 0.96 0.65 0.73 0.60 0.78 0.47 0.67 0.54 0.81 0.90 0.53 0.43 0.50 0.99 0.69 0.87 0.71 0.66 0.98 0.00 0.00 0.60 0.98 0.00 0.31 K alternative_donor DMAP1,I_chr2R_16531774_16531833,I_chr2R_16532870_16532932 chr2R + chr2R_16532870_16532932 chr2R_16532874_16532932 chr2R_16532933_16533032;chr2R_16532770_16532869 96.30 95.00 94.44 95.83 94.74 100.00 94.12 100.00 100.00 100.00 100.00 96.67 100.00 92.31 94.12 93.33 100.00 93.33 93.75 96.00 100.00 100.00 96.67 96.30 100.00 93.75 92.00 95.24 100.00 94.12 92.86 100.00 95.83 100.00 100.00 92.86 91.30 100.00 100.00 92.00 95.24 90.00 91.67 92.31 95.83 96.30 96.77 100.00 100.00 97.06 96.00 100.00 95.24 100.00 100.00 96.00 100.00 100.00 K intron_retention msps,I_chr3R_11877071_11877796 chr3R + chr3R_11882514_11883015 chr3R_11882513_11882514;chr3R_11883015_11883016 chr3R_11882014_11882513;chr3R_11883016_11883111 9.52 NA 0.00 NA 0.00 NA NA 12.50 0.00 NA NA 14.29 NA NA NA 15.79 15.38 NA NA 4.08 NA 0.00 20.00 NA NA NA NA NA NA NA 10.00 NA NA 9.52 NA 3.23 14.29 NA NA NA NA 0.00 NA NA NA NA 0.00 0.00 14.29 NA 20.00 NA NA NA NA NA NA NA N jcn_only_AD Fpps chr2R - chr2R_7194465_7194765 chr2R_7194465_7194535 chr2R_7194370_7194464;chr2R_7194766_7195007 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Cctgamma chr3R + chr3R_12473318_12473557;chr3R_12473479_12473557;chr3R_12473420_12473557;chr3R_12473424_12473557;chr3R_12473464_12473557 chr3R_12473409_12473557 chr3R_12473558_12473651;chr3R_12473311_12473317 0.00 3.57 4.00 0.00 4.35 0.00 2.78 0.00 1.59 0.00 0.00 3.03 5.56 4.00 7.41 3.23 4.17 0.00 0.00 0.00 0.00 0.00 0.00 3.85 7.14 5.26 3.70 0.00 0.00 0.00 3.70 0.00 0.00 2.78 0.00 7.69 0.00 4.55 4.76 0.00 10.00 2.63 0.00 0.00 0.00 5.56 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 K intron_retention ens,I_chr3L_4130719_4131120 chr3L - chr3L_4128974_4129650 chr3L_4128973_4128974;chr3L_4129650_4129651 chr3L_4128946_4128973;chr3L_4129651_4129788 6.28 NA NA NA NA NA 14.29 NA 9.52 NA NA 2.13 NA NA NA 6.67 NA 0.00 NA 0.00 NA NA 0.00 14.29 NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 15.00 NA 6.67 NA NA NA NA NA 30.77 5.88 NA NA NA NA NA NA NA NA NA N jcn_only_AD Hcf,I_chr4_391984_392875 chr4 + chr4_380985_381212;chr4_380911_381212;chr4_380646_381212;chr4_380607_381212 chr4_380602_381212 chr4_381213_381632;chr4_380600_380601 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG2249,RI_chr2R_5937150_5937205,I_chr2R_5937410_5937470 chr2R + chr2R_5937405_5937464 chr2R_5937410_5937464 chr2R_5937465_5937533;chr2R_5937341_5937404 79.37 80.18 84.39 86.29 79.21 81.25 79.23 79.29 75.78 81.82 80.49 81.97 73.91 74.81 85.26 84.02 77.17 80.51 82.64 80.17 85.11 78.26 78.89 74.80 79.00 86.49 77.97 79.58 77.60 80.30 81.94 81.99 73.48 84.38 78.83 79.53 78.81 78.40 77.20 75.94 76.36 86.32 77.92 76.00 78.40 79.89 80.03 76.92 81.16 78.85 79.51 75.00 78.60 79.95 84.82 77.88 79.37 82.58 K alternative_donor bl,I_chr2R_16481586_16483061,mir-7 chr2R + chr2R_16493357_16493948 chr2R_16493382_16493948 chr2R_16493949_16494359;chr2R_16493187_16493356 1.64 0.78 0.91 1.19 0.98 0.89 0.76 2.45 1.92 1.49 2.60 1.96 1.23 2.42 2.17 2.29 1.98 0.81 3.23 3.36 2.22 0.71 1.84 3.00 0.89 2.26 1.37 1.49 4.04 0.93 1.85 1.64 1.82 1.64 0.85 2.50 2.33 0.81 1.79 0.57 1.83 2.06 1.10 1.96 1.48 2.50 2.21 1.55 1.17 2.17 1.07 0.84 0.90 2.23 1.26 0.59 1.13 0.62 K intron_retention Upf2,I_chrX_7969268_7969358,I_chrX_7969312_7969358 chrX - chrX_7969312_7969358 chrX_7969311_7969312;chrX_7969358_7969359 chrX_7969212_7969311;chrX_7969359_7969458 91.67 NA NA 91.67 NA 88.89 91.67 94.12 100.00 NA NA 92.86 NA NA 81.82 100.00 NA 90.00 91.67 93.33 NA 88.89 100.00 100.00 NA 91.67 100.00 NA NA NA 90.00 NA NA 100.00 NA NA NA NA NA 91.67 NA 90.91 100.00 NA NA NA NA NA 93.33 NA NA NA NA NA 90.91 NA NA NA K jcn_only_AD bbc,REI_chr2R_9379401_9381986 chr2R - chr2R_9379401_9382398 chr2R_9379401_9381755 chr2R_9379301_9379400;chr2R_9382399_9382462 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.84 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG5245,Pros25 chr3R + chr3R_8257945_8258008 chr3R_8257944_8257945;chr3R_8258008_8258009 chr3R_8257789_8257944;chr3R_8258009_8258353 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.57 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.33 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 K alternative_donor CG8080,REI_chr2R_4979159_4979234,I_chr2R_4979276_4979936 chr2R - chr2R_4979159_4979936 chr2R_4979159_4979234 chr2R_4979059_4979158;chr2R_4979937_4980036 8.33 8.70 13.33 11.11 6.67 5.56 36.36 9.52 12.50 7.69 12.50 13.33 27.78 9.09 8.70 8.33 11.11 7.14 9.52 11.76 22.22 33.33 4.76 6.67 14.29 10.00 17.65 10.00 NA 7.69 5.56 10.00 4.76 12.90 7.69 12.50 7.14 5.26 6.67 6.67 11.11 10.81 5.56 4.00 10.00 3.57 7.14 6.67 8.89 5.56 7.41 5.00 0.00 NA 6.90 5.56 7.41 3.03 K cassette bol,RI_chr3L_9117011_9118271 chr3L - chr3L_9106588_9118266;chr3L_9106588_9118271 chr3L_9106588_9116715;chr3L_9117011_9118271,chr3L_9117011_9118266 chr3L_9116716_9117010 chr3L_9106512_9106587;chr3L_9118272_9118272 100.00 NA 80.00 100.00 NA 80.00 100.00 88.89 92.31 NA 80.00 100.00 85.71 100.00 100.00 100.00 NA NA 87.50 71.43 100.00 NA 100.00 NA NA NA NA NA NA NA 80.00 NA NA 100.00 NA NA NA NA NA NA NA 90.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA K alternative_donor SD23414,CG9132,I_chrX_16693612_16694097,I_chrX_16693612_16694529,I_chrX_16696492_16696589 chrX - chrX_16693612_16694097;chrX_16693612_16696171 chrX_16693612_16694558 chrX_16693512_16693611;chrX_16696172_16696233 98.59 98.78 98.59 97.47 98.15 98.41 98.59 98.88 98.53 98.21 97.87 99.16 97.96 97.96 98.65 98.44 97.87 98.48 100.00 99.33 98.28 98.51 99.06 99.04 100.00 100.00 97.33 96.08 98.57 98.68 98.53 96.51 98.26 98.85 98.44 98.59 99.24 98.92 99.26 99.14 97.14 99.25 97.73 98.59 98.35 98.48 97.89 97.98 99.13 98.90 98.81 98.21 98.89 99.03 98.65 99.10 99.22 97.78 K intron_retention lack chr2R + chr2R_13489853_13489908 chr2R_13489852_13489853;chr2R_13489908_13489909 chr2R_13487767_13489852;chr2R_13489909_13490108 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention wds,egh,mit(1)15 chrX + chrX_2480583_2480793 chrX_2480582_2480583;chrX_2480793_2480794 chrX_2480025_2480582;chrX_2480794_2481419 0.00 0.00 0.00 2.78 4.76 0.00 0.00 6.67 5.26 NA 0.00 0.00 0.00 4.35 0.00 3.70 0.00 0.00 5.00 8.00 5.00 0.00 0.00 0.00 0.00 0.00 6.67 9.09 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 2.70 9.09 0.00 5.88 0.00 0.00 0.00 12.50 0.00 5.26 7.27 0.00 0.00 NA 0.00 0.00 0.00 0.00 7.69 0.00 K jcn_only_AA CG8632,CG8646 chr2R + chr2R_8540633_8540691 chr2R_8540633_8540686 chr2R_8540334_8540632;chr2R_8540692_8541563 96.72 93.10 96.00 94.23 NA 100.00 100.00 97.44 98.15 NA NA 96.15 NA 100.00 96.43 100.00 NA 88.89 95.65 94.92 100.00 96.43 94.74 95.12 92.86 97.44 95.56 NA 100.00 94.87 96.55 100.00 96.00 94.87 NA 100.00 94.12 97.44 89.74 98.73 100.00 100.00 100.00 100.00 100.00 97.87 96.67 96.72 96.36 95.00 100.00 100.00 90.91 100.00 96.77 100.00 NA 92.59 K intron_retention Bub3,I_chr3R_25500779_25500838 chr3R - chr3R_25500786_25500838 chr3R_25500785_25500786;chr3R_25500838_25500839 chr3R_25499716_25500785;chr3R_25500839_25500938 0.00 0.00 0.62 0.00 1.32 0.00 0.63 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 1.21 2.00 1.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.42 0.65 1.08 1.76 0.64 0.83 0.00 0.00 1.65 0.00 0.00 0.80 0.00 0.94 0.00 1.03 0.55 0.00 0.00 0.40 0.82 K jcn_only_AD Vps20 chr2R + chr2R_18496124_18496188 chr2R_18496135_18496188 chr2R_18496189_18496298;chr2R_18496038_18496123 0.45 0.00 0.00 1.05 0.00 0.00 0.00 0.46 0.23 0.73 0.00 0.72 0.00 1.06 0.00 1.03 0.00 0.00 0.00 0.18 0.00 0.65 0.60 0.38 0.00 1.54 0.52 0.45 0.52 0.00 3.17 0.00 0.69 1.04 0.62 0.00 0.85 0.00 0.49 0.00 0.79 0.29 1.79 1.56 0.85 0.68 0.85 0.00 1.13 0.00 1.35 0.63 0.32 0.28 0.00 0.58 0.35 0.57 K jcn_only_AD CG10365,I_chr3R_19549381_19554106,I_chr3R_19554176_19554388 chr3R + chr3R_19549425_19554388;chr3R_19549381_19554388 chr3R_19549452_19554388 chr3R_19554389_19554488;chr3R_19549281_19549380 3.23 3.33 8.11 2.38 0.00 0.00 4.35 3.33 3.39 0.00 8.70 2.86 NA 0.00 8.33 7.14 0.00 4.35 0.00 5.66 4.35 NA 0.00 0.00 3.85 0.00 0.00 NA 4.17 2.38 5.88 4.55 2.44 3.03 0.00 NA 3.03 0.00 2.70 6.35 6.98 4.62 0.00 5.56 2.70 8.77 5.41 4.23 5.17 0.00 2.63 0.00 NA 2.70 5.41 3.23 NA 7.14 K intron_retention I_chr2L_822032_822857,dock chr2L + chr2L_831920_832994 chr2L_831919_831920;chr2L_832994_832995 chr2L_831714_831919;chr2L_832995_833208 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.80 100.00 100.00 100.00 100.00 100.00 100.00 98.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 98.08 100.00 100.00 100.00 100.00 98.15 100.00 97.73 97.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 K intron_retention pod1 chrX + chrX_6703171_6703406 chrX_6703170_6703171;chrX_6703406_6703407 chrX_6703097_6703170;chrX_6703407_6703439 0.00 0.00 0.00 0.00 NA NA 0.00 2.78 0.00 NA 0.00 6.06 0.00 4.35 0.00 6.25 0.00 0.00 NA 4.44 0.00 0.00 NA 6.25 NA NA 0.00 6.25 0.00 13.33 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 9.09 NA 0.00 0.00 0.00 NA 7.69 NA 4.55 4.35 NA 0.00 NA NA NA 0.00 NA 0.00 NA K alternative_acceptor CG5871,NELF-A chr3R + chr3R_17047473_17047538 chr3R_17047473_17047531 chr3R_17047048_17047472;chr3R_17047539_17048572 100.00 93.33 94.12 100.00 91.67 100.00 100.00 94.12 85.71 NA 84.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 95.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 88.89 92.86 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 96.30 100.00 100.00 92.86 100.00 100.00 100.00 95.65 92.31 100.00 88.89 100.00 100.00 100.00 100.00 100.00 90.00 N intron_retention CG3287,I_chr2R_2700203_2700285 chr2R + chr2R_2701259_2702564 chr2R_2701258_2701259;chr2R_2702564_2702565 chr2R_2700678_2701258;chr2R_2702565_2703029 2.08 0.00 0.00 6.25 4.55 0.00 2.86 4.44 3.17 NA 12.50 7.50 6.25 0.00 0.00 6.38 0.00 0.00 5.88 2.74 11.76 2.08 1.72 5.71 0.00 2.94 3.70 NA 18.92 0.00 0.00 NA 0.00 12.20 0.00 0.00 5.41 0.00 5.00 0.00 11.11 0.00 0.00 6.67 NA 12.50 0.00 5.41 3.51 0.00 4.55 0.00 0.00 0.00 0.00 0.00 10.53 0.00 K intron_retention CG31612,E_chr2L_21775447_21821182 chr2L - chr2L_21766161_21772999 chr2L_21766160_21766161;chr2L_21772999_21773000 chr2L_21765963_21766160;chr2L_21773000_21773178 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 K alternative_acceptor CG30344,I_chr2R_5033478_5033544,RI_chr2R_5033951_5034150,I_chr2R_5036518_5036570 chr2R + chr2R_5033478_5034150 chr2R_5033478_5033544 chr2R_5033378_5033477;chr2R_5034151_5034250 5.26 8.00 10.00 4.55 6.25 3.57 8.93 5.77 6.35 9.09 7.14 5.71 14.29 4.00 2.70 6.12 6.25 3.45 5.88 5.56 10.00 9.09 5.45 2.56 3.70 4.55 5.26 4.35 4.00 3.57 6.90 5.56 4.35 8.70 3.85 3.45 8.33 3.45 2.27 4.17 4.55 7.27 8.00 3.85 15.38 2.78 2.94 8.33 8.20 3.45 3.39 3.70 6.90 4.00 3.70 4.76 4.44 5.56 K intron_retention CG6498,I_chr3L_15561224_15561305 chr3L + chr3L_15567572_15567635 chr3L_15567571_15567572;chr3L_15567635_15567636 chr3L_15567256_15567571;chr3L_15567636_15568528 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 4.44 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 K intron_retention mthl10 chr3L - chr3L_333641_334974 chr3L_333640_333641;chr3L_334974_334975 chr3L_333522_333640;chr3L_334975_335169 60.00 NA NA 35.29 NA NA 100.00 53.85 87.50 NA NA NA 33.33 NA NA NA NA NA 60.00 66.67 NA NA 45.45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 63.64 NA NA NA NA NA NA 58.33 NA 70.00 NA NA NA NA NA NA NA K intron_retention r-l chr3R - chr3R_16897547_16898210 chr3R_16897546_16897547;chr3R_16898210_16898211 chr3R_16896552_16897546;chr3R_16898211_16898727 3.45 5.06 0.00 10.71 4.26 0.00 4.17 3.92 1.92 0.00 2.00 1.61 0.00 0.00 3.28 8.33 0.00 2.56 0.00 0.72 0.00 31.71 8.25 4.08 3.92 7.14 5.56 4.21 2.22 6.98 0.00 2.70 2.75 0.00 5.66 0.00 5.34 2.80 4.04 3.66 3.85 1.74 0.00 4.00 3.49 6.45 3.12 7.46 1.90 3.57 4.48 5.45 0.00 3.64 4.17 2.22 3.45 0.00 K intron_retention CycT,I_chr3L_17548631_17550687 chr3L - chr3L_17549520_17549595 chr3L_17549519_17549520;chr3L_17549595_17549596 chr3L_17549474_17549519;chr3L_17549596_17550817 18.27 15.25 18.31 40.51 20.63 23.21 16.25 33.33 18.37 15.79 21.31 35.54 16.00 14.06 24.36 25.81 19.57 15.52 29.79 14.58 25.00 23.38 16.36 13.10 27.78 24.00 32.77 47.56 31.67 16.67 18.42 12.12 16.92 18.48 22.22 12.68 14.38 12.99 11.92 18.27 29.17 19.47 17.86 16.46 10.81 12.20 10.26 21.31 18.42 17.02 14.29 12.77 13.89 21.05 21.88 12.77 12.50 17.86 K alternative_acceptor CG2064 chr2R + chr2R_3553522_3553627;chr2R_3553522_3553650 chr2R_3553522_3553619 chr2R_3553444_3553521;chr2R_3553651_3553914 0.30 0.00 0.00 0.33 0.00 0.00 0.75 0.00 0.87 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.27 0.00 0.70 0.62 0.40 0.59 0.00 0.78 0.96 1.58 0.68 0.42 0.00 0.68 0.39 0.00 0.96 0.66 0.57 0.49 0.45 1.74 0.00 0.00 1.22 1.86 0.40 0.00 1.56 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.56 K cassette gish chr3R + chr3R_12115562_12118445 chr3R_12115562_12118197;chr3R_12118273_12118445 chr3R_12118198_12118272 chr3R_12115353_12115561;chr3R_12118446_12118556 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention snama chr2R + chr2R_19977229_19977288 chr2R_19977228_19977229;chr2R_19977288_19977289 chr2R_19977079_19977228;chr2R_19977289_19977582 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 4.26 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention cv-c,RI_chr3R_10258928_10265129,RI_chr3R_10301040_10306363,RI_chr3R_10306635_10307255 chr3R - chr3R_10218612_10218673 chr3R_10218611_10218612;chr3R_10218673_10218674 chr3R_10217416_10218611;chr3R_10218674_10218853 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Pka-R1,CG3288 chr3L + chr3L_20826758_20826832 chr3L_20826758_20826829 chr3L_20826383_20826757;chr3L_20826833_20826969 59.09 55.56 59.09 37.50 70.59 75.00 65.00 68.18 53.12 50.00 66.67 65.52 40.00 60.00 50.00 54.55 63.64 58.82 43.75 67.86 53.33 71.79 63.33 55.00 58.82 53.33 51.85 68.18 61.29 59.09 69.23 52.63 62.16 52.00 60.00 46.15 62.50 73.08 58.82 53.85 56.52 59.46 41.18 61.11 64.00 57.69 60.71 62.79 51.85 59.09 63.64 35.71 61.90 50.00 55.00 57.14 57.14 78.12 K intron_retention CG14741 chr3R - chr3R_7897251_7898007 chr3R_7897250_7897251;chr3R_7898007_7898008 chr3R_7897104_7897250;chr3R_7898008_7898194 1.11 0.00 1.18 4.85 0.00 0.64 1.32 1.95 1.75 0.95 0.00 1.36 6.71 2.58 0.00 1.83 2.13 0.98 0.00 2.12 1.18 0.66 2.72 2.61 2.35 0.97 1.32 3.57 1.92 0.00 0.92 0.00 0.29 1.39 0.00 2.07 2.47 0.00 1.44 1.11 0.00 1.11 0.00 0.00 1.46 0.00 2.78 0.00 1.87 2.74 1.47 0.00 0.00 0.00 0.91 0.00 2.22 0.00 K alternative_acceptor tsh,I_chr2L_21836642_21836821 chr2L + chr2L_21836642_21836821 chr2L_21836642_21836816 chr2L_21836542_21836641;chr2L_21836822_21836921 98.48 100.00 100.00 98.33 100.00 95.65 97.73 98.11 98.28 100.00 100.00 100.00 96.55 100.00 100.00 98.41 100.00 97.44 97.06 100.00 96.30 95.65 97.92 100.00 96.15 100.00 96.43 94.44 96.77 100.00 98.21 98.31 97.96 98.33 100.00 100.00 100.00 100.00 100.00 98.31 100.00 98.53 96.55 97.78 97.06 98.95 98.31 97.01 100.00 96.88 100.00 100.00 96.43 100.00 100.00 98.48 100.00 100.00 K alternative_donor CG7414,I_chr3L_21819515_21819581 chr3L + chr3L_21819853_21820193 chr3L_21820136_21820193 chr3L_21820194_21820958;chr3L_21819575_21819852 28.72 27.18 24.60 29.72 23.72 25.54 39.18 30.67 28.46 32.12 32.99 29.14 22.73 24.08 25.00 24.03 25.14 29.17 30.11 25.18 32.14 33.33 20.33 27.08 30.43 27.03 22.48 17.53 27.97 28.69 32.48 35.74 42.77 30.93 31.72 25.91 26.22 24.37 29.53 33.51 39.34 28.76 27.27 29.27 35.93 32.27 23.62 46.61 28.61 24.19 29.04 25.13 30.69 28.92 28.72 27.19 25.05 45.86 K jcn_only_AD Pk61C,CE_chr3L_129889_141769,I_chr3L_132531_133824,I_chr3L_133962_134014 chr3L + chr3L_129889_135457 chr3L_129909_135457 chr3L_135458_135842;chr3L_129840_129888 0.00 2.04 0.00 1.10 3.51 1.79 0.00 1.77 1.27 0.00 0.00 3.26 1.89 0.00 0.00 0.00 0.00 4.00 1.52 0.00 0.00 0.00 1.82 0.00 0.00 0.00 1.56 0.00 6.67 1.23 0.00 0.00 1.35 1.04 1.61 1.96 1.37 0.00 0.00 0.00 3.23 1.49 5.26 1.72 0.00 0.00 0.00 0.90 3.60 NA 0.00 0.00 0.00 0.00 1.47 0.00 NA 1.82 K jcn_only_AD Treh,I_chr2R_16972565_16972702,I_chr2R_16975359_16975442,RI_chr2R_16975359_16975842,I_chr2R_16975364_16975842 chr2R + chr2R_16974443_16975285 chr2R_16974918_16975285 chr2R_16975286_16975358;chr2R_16974405_16974442 73.68 71.43 71.43 78.63 89.71 73.91 88.80 88.71 80.71 80.00 86.00 77.68 91.43 88.33 87.18 83.78 89.09 81.82 78.79 77.09 81.48 59.26 62.50 63.24 71.88 83.33 72.31 91.89 67.65 44.23 81.11 58.93 59.26 75.00 69.23 73.68 64.00 57.41 66.67 54.93 51.61 78.99 85.42 69.74 61.96 48.19 58.93 44.83 79.84 90.32 57.14 76.32 54.35 57.14 75.90 52.50 45.76 37.37 K alternative_acceptor Atg18,I_chr3L_8182683_8182941 chr3L + chr3L_8180294_8180578;chr3L_8180294_8180586 chr3L_8180294_8180540 chr3L_8180118_8180293;chr3L_8180587_8180676 5.88 5.71 7.50 5.17 3.70 6.67 14.63 3.77 4.29 5.88 3.70 6.90 0.00 6.67 4.55 5.26 3.12 6.67 2.86 7.94 2.86 14.47 5.17 6.52 8.11 7.50 8.51 12.50 7.41 2.50 6.00 5.00 1.69 2.22 3.33 25.58 5.00 2.13 6.00 6.90 16.67 5.88 4.00 4.76 7.69 6.06 2.63 7.89 4.76 8.57 6.12 4.35 6.45 6.06 5.88 9.09 4.35 0.00 K multi_cassette Ppn,F_chr3R_24347009_24347078 chr3R - chr3R_24348983_24351592 chr3R_24348983_24349501;chr3R_24349697_24349755;chr3R_24349940_24349995;chr3R_24351030_24351592 chr3R_24349502_24349696;chr3R_24349756_24349939;chr3R_24349996_24351029 chr3R_24348417_24348982;chr3R_24351593_24351772 100.00 100.00 NA 40.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 50.00 100.00 NA 50.00 100.00 75.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA NA NA NA 100.00 NA 100.00 NA 100.00 100.00 100.00 66.67 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA K intron_retention Rrp42,RI_chr2R_11902769_11902844 chr2R + chr2R_11903011_11903064 chr2R_11903010_11903011;chr2R_11903064_11903065 chr2R_11902845_11903010;chr2R_11903065_11903593 0.00 0.00 NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA NA 0.00 11.76 NA NA NA 0.00 NA 3.57 0.00 0.00 NA NA 6.90 4.35 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.68 0.00 0.00 NA 0.00 0.00 0.00 2.50 0.00 0.00 0.00 2.94 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Mipp2 chrX - chrX_5977824_5977886 chrX_5977823_5977824;chrX_5977886_5977887 chrX_5976692_5977823;chrX_5977887_5978087 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 4.55 0.00 0.00 0.00 0.00 NA 0.00 0.00 11.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG2219,I_chr4_199813_199889,RI_chr4_202143_202194 chr4 - chr4_199813_199889;chr4_199822_199889 chr4_199838_199889 chr4_199890_199942;chr4_199758_199812 91.43 96.55 86.67 85.71 100.00 100.00 88.33 93.48 93.22 85.71 93.33 90.00 90.62 89.66 100.00 91.04 84.62 87.50 90.91 90.70 84.62 85.71 94.59 93.10 94.74 83.33 92.31 94.12 92.31 100.00 91.43 92.00 85.71 86.27 90.48 95.00 93.33 89.47 94.12 91.43 83.33 83.33 84.38 95.65 78.57 91.43 100.00 94.74 88.33 87.50 91.89 93.75 100.00 89.47 92.59 95.45 93.55 93.94 K intron_retention CG11267 chr3L + chr3L_13009619_13009686 chr3L_13009618_13009619;chr3L_13009686_13009687 chr3L_13009457_13009618;chr3L_13009687_13010007 0.27 0.44 0.94 1.19 0.00 0.00 0.00 1.48 0.58 0.00 0.00 0.87 0.00 0.00 0.00 1.11 0.00 0.64 0.00 1.08 0.00 0.00 1.03 0.64 0.40 0.00 1.18 3.56 3.50 0.00 0.00 0.61 0.22 0.75 0.00 0.76 0.56 0.00 0.34 0.22 0.00 0.50 0.00 0.00 0.22 0.97 0.00 0.00 0.30 0.41 0.25 0.00 0.30 0.27 1.05 0.65 0.61 0.00 K multi_cassette CG40263,F_chr2RHet_1265687_1293040,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1324541_1335781 chr2RHet_1324541_1333289;chr2RHet_1333469_1335106;chr2RHet_1335333_1335781 chr2RHet_1333290_1333468;chr2RHet_1335107_1335332 chr2RHet_1324446_1324540;chr2RHet_1335782_1335833 7.42 4.35 5.88 6.67 10.53 7.14 2.38 2.78 3.66 NA 81.82 11.76 NA 5.88 6.25 5.26 4.55 14.29 3.45 7.69 27.27 NA 20.00 10.00 NA 0.00 0.00 33.33 33.33 18.18 5.56 NA NA 1.85 10.00 NA NA 10.00 NA 19.05 NA 2.22 0.00 15.00 NA 36.36 0.00 NA 2.50 NA 5.88 8.70 20.00 10.00 8.33 0.00 12.50 42.86 K jcn_only_AA RpS26 chr2L - chr2L_18443071_18443152 chr2L_18443074_18443152 chr2L_18443153_18443237;chr2L_18442505_18443070 1.15 1.00 1.10 1.08 1.20 1.24 1.10 1.00 1.01 1.56 1.04 1.06 1.05 1.04 1.07 1.17 0.97 1.14 1.27 1.18 1.11 1.28 0.99 1.13 1.34 0.98 0.99 1.27 1.59 1.61 1.15 2.22 2.16 1.19 1.40 1.23 1.19 1.12 1.09 1.32 1.87 1.12 1.23 1.18 1.54 1.79 0.97 2.36 1.02 0.99 0.99 1.19 1.19 0.95 1.04 1.09 1.15 2.10 K intron_retention I_chr3R_4807909_4807960,CG11967 chr3R + chr3R_4807890_4807960 chr3R_4807889_4807890;chr3R_4807960_4807961 chr3R_4807823_4807889;chr3R_4807961_4808060 7.69 NA NA NA NA NA NA NA 5.56 NA NA NA NA NA NA 41.18 NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA 7.14 NA NA NA NA NA NA NA NA NA K cassette lark,noncoding_11093,REI_chr3L_7332718_7333975,RI_chr3L_7334219_7334452 chr3L + chr3L_7332718_7333061 chr3L_7332718_7332967;chr3L_7333009_7333061 chr3L_7332968_7333008 chr3L_7332618_7332717;chr3L_7333062_7333870 23.84 14.29 30.00 NA 6.67 NA NA 30.77 20.83 27.27 NA 29.41 NA 50.00 12.50 NA NA NA NA 45.00 NA 14.29 21.88 13.33 20.00 NA 20.00 NA 26.32 12.00 NA 31.25 25.81 35.29 29.41 10.00 15.38 14.29 11.76 34.38 37.50 32.00 NA NA 21.43 28.57 16.67 50.00 27.78 15.00 30.00 NA 13.04 46.15 NA 19.05 12.00 28.57 K jcn_only_AA RanBPM chr2R + chr2R_6317289_6318384 chr2R_6317289_6318038 chr2R_6317228_6317288;chr2R_6318385_6319420 4.55 7.50 3.77 9.40 3.77 3.77 3.70 4.35 5.74 17.39 2.27 11.46 3.70 2.38 1.43 18.46 5.45 7.69 5.08 9.26 0.00 10.81 2.27 3.45 0.00 4.08 NA 4.55 14.81 NA 4.62 0.00 8.33 4.40 NA NA 3.08 0.00 4.76 16.67 NA 2.88 4.55 7.69 0.00 6.90 6.67 2.38 5.77 3.33 12.82 2.50 8.82 NA 5.71 3.33 20.00 11.11 K intron_retention He,I_chr2L_13975880_13975977 chr2L - chr2L_13972612_13972790 chr2L_13972611_13972612;chr2L_13972790_13972791 chr2L_13972094_13972611;chr2L_13972791_13972964 0.22 0.00 0.46 0.78 0.00 0.51 0.27 0.66 0.34 0.00 0.00 0.41 0.26 0.54 0.23 0.52 0.35 0.15 0.22 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.20 0.00 0.00 0.56 0.53 0.00 0.00 0.00 0.00 0.25 0.00 0.28 0.42 0.29 0.32 0.00 0.39 0.11 0.54 0.38 0.00 0.71 0.00 0.26 0.22 0.00 0.26 0.21 K intron_retention E(bx),I_chr3L_239186_239264,I_chr3L_246324_246699 chr3L - chr3L_235515_235578 chr3L_235514_235515;chr3L_235578_235579 chr3L_235410_235514;chr3L_235579_236074 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 NA 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention mu2,I_chr3L_1945382_1945647 chr3L - chr3L_1945592_1945647 chr3L_1945591_1945592;chr3L_1945647_1945648 chr3L_1945437_1945591;chr3L_1945648_1945655 0.00 NA NA 4.00 NA NA 0.00 3.70 2.94 NA NA 0.00 12.50 NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 0.00 NA 4.17 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K alternative_donor kek5,noncoding_24742 chrX + chrX_19247617_19256999 chrX_19247687_19256999 chrX_19257000_19257050;chrX_19247500_19247616 53.34 NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG8334,I_chr3L_19870731_19870822 chr3L + chr3L_19864555_19866860 chr3L_19864554_19864555;chr3L_19866860_19866861 chr3L_19864486_19864554;chr3L_19866861_19867095 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.71 9.52 2.27 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 14.29 0.00 0.00 NA 0.00 2.70 0.00 0.00 0.00 0.00 0.00 5.71 NA 2.00 0.00 5.56 NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA N multi_cassette RpL11,I_chr2R_15330246_15330292,I_chr2R_15330603_15330817,snoRNA:Psi28S-2444 chr2R + chr2R_15330246_15330817 chr2R_15330246_15330317;chr2R_15330604_15330664;chr2R_15330745_15330817 chr2R_15330318_15330603;chr2R_15330665_15330744 chr2R_15330177_15330245;chr2R_15330818_15330917 100.00 100.00 NA 30.00 100.00 62.50 100.00 70.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 68.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 66.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention TepIV,EI_chr2L_19548696_19549582 chr2L + chr2L_19548696_19549858 chr2L_19548695_19548696;chr2L_19549858_19549859 chr2L_19548596_19548695;chr2L_19549859_19549928 81.06 85.95 90.70 76.17 77.91 79.44 67.16 74.47 78.29 78.87 93.10 87.28 91.67 81.06 83.92 82.17 77.36 92.68 78.15 92.04 84.73 62.16 84.21 78.20 67.90 76.11 73.03 64.18 70.53 73.40 83.93 84.44 83.87 79.82 71.00 72.18 75.81 78.85 83.55 81.69 76.32 80.42 82.35 75.00 91.67 87.23 86.27 84.62 84.97 64.65 72.50 70.27 89.71 85.71 83.11 88.10 82.17 90.74 K intron_retention Lac,I_chr2R_8341560_8351848,RE_chr2R_8341564_8351844,I_chr2R_8348603_8351844 chr2R + chr2R_8341560_8351844 chr2R_8341559_8341560;chr2R_8351844_8351845 chr2R_8341464_8341559;chr2R_8351845_8351944 0.00 0.00 0.00 0.43 0.00 0.62 0.59 0.00 1.52 0.00 0.00 0.77 1.64 0.00 0.00 1.47 0.00 1.43 0.00 0.29 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.65 0.00 0.58 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Rab5,I_chr2L_2361586_2364444,RI_chr2L_2361586_2364627,I_chr2L_2361586_2364794 chr2L - chr2L_2361586_2364640;chr2L_2361586_2364836;chr2L_2361586_2365060;chr2L_2361586_2364302;chr2L_2361586_2364594;chr2L_2361586_2364312;chr2L_2361586_2364889 chr2L_2361586_2364480 chr2L_2361486_2361585;chr2L_2365061_2365065 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8176,I_chr3R_5348614_5348964 chr3R + chr3R_5352166_5352227 chr3R_5352165_5352166;chr3R_5352227_5352228 chr3R_5351936_5352165;chr3R_5352228_5352964 0.00 0.00 0.68 0.67 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14749 chr2R + chr2R_4517048_4517115 chr2R_4517047_4517048;chr2R_4517115_4517116 chr2R_4515382_4517047;chr2R_4517116_4517691 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 96.88 100.00 100.00 97.06 93.75 100.00 100.00 100.00 92.86 94.44 100.00 100.00 92.86 100.00 100.00 96.30 100.00 100.00 95.45 100.00 92.86 92.86 92.86 100.00 100.00 100.00 93.75 100.00 96.00 100.00 100.00 96.88 100.00 97.22 100.00 95.24 100.00 100.00 96.15 100.00 96.55 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor scu,RhoGAP16F chrX + chrX_17988131_17989117;chrX_17987638_17989117;chrX_17988127_17989117 chrX_17987656_17989117 chrX_17989118_17990486;chrX_17987544_17987637 0.00 20.00 0.00 0.00 0.00 0.00 6.67 0.00 3.45 0.00 0.00 4.76 0.00 0.00 14.29 5.00 7.69 10.00 8.33 0.00 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 11.11 0.00 2.86 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 10.00 0.00 K alternative_donor Imp,I_chrX_10699490_10700695,RI_chrX_10699665_10700501,RI_chrX_10699665_10700695 chrX - chrX_10699665_10700501;chrX_10699665_10700695 chrX_10699665_10700474 chrX_10699565_10699664;chrX_10700696_10700795 22.22 40.00 28.57 28.57 NA 33.33 12.00 15.38 13.79 NA 25.00 31.58 20.00 18.18 11.11 12.50 7.14 22.22 42.86 18.18 40.00 NA 40.00 NA NA 42.86 14.29 NA NA NA 0.00 NA NA 26.09 NA NA NA NA NA NA NA 27.27 20.00 NA NA NA NA 40.00 13.04 NA 20.00 NA NA NA 28.57 NA NA NA K jcn_only_AD CG11984,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4839215_4839561;chr3R_4839215_4839851;chr3R_4839215_4839728;chr3R_4839215_4839889;chr3R_4839215_4839799 chr3R_4839215_4839655 chr3R_4839038_4839214;chr3R_4839890_4839901 0.00 0.00 0.00 3.33 NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA 0.00 NA 4.55 NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 0.00 K alternative_acceptor CG18811,I_chr3L_18664520_18664589,I_chr3L_18664773_18665233 chr3L - chr3L_18664520_18664589 chr3L_18664535_18664589 chr3L_18664590_18664689;chr3L_18664420_18664519 99.15 100.00 98.25 99.00 100.00 98.28 100.00 100.00 99.07 100.00 97.83 99.14 100.00 100.00 100.00 98.81 97.96 97.73 98.04 99.15 100.00 100.00 98.73 100.00 97.50 100.00 100.00 98.25 98.15 98.11 98.46 100.00 98.73 98.95 97.78 100.00 100.00 100.00 100.00 98.91 98.04 98.21 97.92 100.00 100.00 100.00 97.78 98.86 100.00 97.14 100.00 100.00 100.00 100.00 98.48 100.00 100.00 98.36 K cassette CG41099,R_chr3RHet_1688501_1702556,I_chr3RHet_1688505_1705884,RI_chr3RHet_1703294_1705884 chr3RHet - chr3RHet_1688505_1705901;chr3RHet_1688505_1705884 chr3RHet_1688505_1702560;chr3RHet_1703294_1705884,chr3RHet_1703294_1705901 chr3RHet_1702561_1703293 chr3RHet_1688405_1688504;chr3RHet_1705902_1705984 100.00 100.00 100.00 98.25 100.00 100.00 100.00 98.85 100.00 100.00 100.00 100.00 100.00 97.30 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 K jcn_only_AD eIF-1A,I_chr3R_14106104_14107415,I_chr3R_14106955_14107415 chr3R + chr3R_14106104_14107415;chr3R_14100864_14107415 chr3R_14106955_14107415 chr3R_14107416_14107515;chr3R_14100759_14100863 0.00 0.18 0.16 0.00 0.00 0.00 0.00 0.33 0.00 0.23 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.18 0.00 0.17 0.21 0.00 0.00 0.00 0.00 0.00 0.24 0.18 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.14 0.60 0.17 0.00 0.00 0.39 0.00 0.00 K alternative_acceptor EndoGI,CG4935 chr2L + chr2L_16257766_16258039 chr2L_16257766_16258036 chr2L_16257697_16257765;chr2L_16258040_16258179 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 93.33 NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA K intron_retention CG32163 chr3L + chr3L_16580506_16580609 chr3L_16580505_16580506;chr3L_16580609_16580610 chr3L_16580472_16580505;chr3L_16580610_16580996 100.00 100.00 100.00 100.00 92.86 100.00 97.44 96.77 98.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 97.22 100.00 K alternative_acceptor CG2316,I_chr4_208796_210623,I_chr4_209150_214298,I_chr4_209369_210623,I_chr4_209875_210055,I_chr4_209875_210628,I_chr4_209875_213969,RI_chr4_209875_214450,I_chr4_210688_211303,RI_chr4_210688_211927,I_chr4_210688_213991,I_chr4_210688_214019,I_chr4_210688_214049,RI_chr4_210688_214450 chr4 - chr4_209369_210623 chr4_209875_210623 chr4_210624_210636;chr4_209269_209368 100.00 100.00 100.00 98.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.39 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 97.22 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.26 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 K intron_retention CG12918,E_chr2R_5938650_5939342 chr2R - chr2R_5939207_5939306 chr2R_5939206_5939207;chr2R_5939306_5939307 chr2R_5939039_5939206;chr2R_5939307_5939769 3.17 2.11 0.00 6.03 0.00 0.00 4.44 3.05 3.07 3.57 4.17 1.18 2.38 2.41 3.51 1.63 1.08 2.53 0.00 2.88 4.82 11.94 2.24 1.38 3.50 1.41 3.92 4.35 10.11 5.26 9.43 5.36 10.64 3.17 3.45 13.33 3.72 2.03 3.49 2.41 10.53 2.62 4.69 2.24 3.61 4.24 3.42 4.08 2.76 4.13 3.23 2.74 2.30 2.45 0.72 1.97 1.32 4.82 K jcn_only_AD CG42533,EI_chr2L_7473200_7473297,RI_chr2L_7473200_7473419,F_chr2L_7476906_7476978 chr2L - chr2L_7473200_7473656;chr2L_7473200_7473770;chr2L_7473200_7473419 chr2L_7473200_7473297 chr2L_7473100_7473199;chr2L_7473771_7473889 37.50 47.06 47.37 48.00 NA 53.57 53.06 56.00 55.68 11.11 66.67 57.14 61.90 82.05 22.22 34.04 46.43 56.00 51.16 34.88 56.52 34.04 25.58 39.39 37.50 38.10 42.86 NA 16.33 51.43 26.56 30.00 22.45 47.37 31.25 14.63 29.41 45.00 37.50 28.77 32.73 35.90 39.39 31.11 21.74 27.63 37.50 20.20 44.44 53.06 47.62 37.50 19.05 39.13 38.46 22.58 30.00 25.24 K intron_retention growl chr3R + chr3R_230362_230422 chr3R_230361_230362;chr3R_230422_230423 chr3R_230191_230361;chr3R_230423_231141 0.12 0.35 0.25 0.26 0.00 0.00 0.21 0.00 0.15 0.00 0.00 0.16 0.00 0.00 0.38 0.11 0.38 0.00 0.28 0.07 0.00 0.10 0.22 0.00 0.38 0.39 1.43 1.62 0.31 0.00 0.12 0.00 0.00 0.00 0.00 0.42 0.27 0.18 0.12 0.32 0.13 0.15 0.19 0.00 0.00 0.41 0.00 0.00 0.29 0.00 0.26 0.41 0.00 0.00 0.24 0.00 0.00 0.00 K cassette capu,I_chr2L_3884519_3902594,I_chr2L_3887896_3888648 chr2L - chr2L_3884519_3893261 chr2L_3884519_3886983;chr2L_3887557_3893261 chr2L_3886984_3887556 chr2L_3884419_3884518;chr2L_3893262_3893604 98.70 98.63 100.00 98.89 100.00 100.00 98.68 100.00 100.00 97.30 98.28 99.15 98.31 100.00 98.59 98.48 100.00 98.44 98.25 99.23 100.00 98.08 99.10 98.99 98.33 96.49 98.91 100.00 98.75 98.75 96.97 97.87 98.94 100.00 98.61 98.73 99.19 98.70 99.12 97.04 100.00 99.21 100.00 98.63 98.11 98.75 98.59 96.49 99.19 98.59 100.00 98.18 98.21 97.87 98.65 98.33 98.44 97.50 K intron_retention CG7145,I_chr3L_21832928_21833150,I_chr3L_21832932_21833106 chr3L - chr3L_21832932_21833198 chr3L_21832931_21832932;chr3L_21833198_21833199 chr3L_21832832_21832931;chr3L_21833199_21833206 78.89 NA NA 81.82 NA NA 90.00 87.50 56.25 NA NA 80.00 NA NA 87.50 63.64 NA NA NA 88.24 NA 60.00 NA NA NA NA NA NA 66.67 77.78 NA 60.00 90.48 NA NA NA NA NA NA 63.16 63.64 90.91 NA NA 88.89 90.91 NA 68.18 63.64 NA 100.00 NA NA NA NA NA NA 76.47 K intron_retention ftz-f1,I_chr3L_18790575_18790636 chr3L - chr3L_18747734_18748233 chr3L_18747733_18747734;chr3L_18748233_18748234 chr3L_18747677_18747733;chr3L_18748234_18748604 3.45 7.69 0.00 7.41 NA 9.09 8.00 5.56 9.80 0.00 NA 0.00 10.53 0.00 21.05 3.23 15.00 0.00 10.53 3.85 NA 2.99 3.92 3.45 0.00 0.00 3.03 0.00 3.57 9.09 3.45 0.00 2.60 8.00 3.45 3.45 0.00 0.00 4.65 1.92 5.71 2.86 5.26 3.85 6.25 2.27 0.00 3.31 7.02 NA 0.00 0.00 0.00 NA 5.71 0.00 NA 0.00 K jcn_only_AD Pvr,I_chr2L_8226604_8228082,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8227151_8227669 chr2L_8227151_8227651 chr2L_8227095_8227150;chr2L_8227670_8227720 67.35 NA 62.86 NA 85.00 65.00 46.67 66.67 62.07 45.83 NA 72.83 NA 80.77 65.52 52.63 53.33 65.71 65.38 69.84 NA NA 67.35 65.62 76.00 52.38 NA NA NA NA 75.44 NA 72.41 69.57 61.90 45.16 67.65 81.82 67.57 69.77 NA 71.70 NA 50.00 NA 77.14 NA 65.00 69.23 NA 68.75 60.87 68.97 NA 77.78 62.50 NA 82.61 K jcn_only_AA Taf6 chr3L + chr3L_19594248_19594309 chr3L_19594248_19594296 chr3L_19594013_19594247;chr3L_19594310_19594484 8.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.41 NA 18.18 NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG7971,I_chr3L_1659363_1659845,I_chr3L_1667736_1667806 chr3L - chr3L_1664787_1664917 chr3L_1664845_1664917 chr3L_1664918_1664986;chr3L_1664532_1664786 100.00 100.00 98.98 100.00 100.00 100.00 100.00 98.98 99.45 100.00 100.00 99.55 98.63 98.28 100.00 100.00 100.00 97.06 100.00 98.49 100.00 98.00 100.00 100.00 100.00 100.00 98.97 98.98 98.46 98.21 98.92 100.00 99.42 99.12 98.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.52 100.00 97.85 98.31 99.47 98.77 99.36 100.00 98.21 100.00 100.00 99.17 99.07 99.46 K alternative_donor NaCP60E,RI_chr2R_20791702_20791803,I_chr2R_20805053_20805170 chr2R + chr2R_20788579_20791803 chr2R_20791702_20791803 chr2R_20791804_20791903;chr2R_20788367_20788578 100.00 100.00 99.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.66 99.81 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Pvr,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8228258_8228493 chr2L_8228257_8228258;chr2L_8228493_8228494 chr2L_8228176_8228257;chr2L_8228494_8229011 4.94 3.07 3.74 6.80 3.23 4.03 3.85 6.38 4.19 5.88 4.14 5.88 5.65 5.95 4.46 5.51 4.52 8.00 4.66 5.28 3.41 5.26 3.43 5.00 5.50 3.59 6.40 4.17 6.25 4.67 5.92 6.56 6.03 4.88 3.31 7.63 3.53 3.75 4.08 5.16 6.12 4.12 5.33 5.63 4.44 4.94 3.80 8.22 5.82 4.04 5.13 5.63 3.28 3.70 4.33 6.32 1.85 6.67 K intron_retention lsn,Cby,CG31431 chr3R + chr3R_17693884_17694036 chr3R_17693883_17693884;chr3R_17694036_17694037 chr3R_17693725_17693883;chr3R_17694037_17694328 95.12 NA NA 92.86 NA 100.00 100.00 94.12 95.24 NA 87.50 92.31 NA NA 100.00 90.91 NA NA NA 91.30 NA 95.45 100.00 90.91 100.00 100.00 93.33 95.45 92.86 91.67 100.00 88.89 100.00 100.00 80.00 NA 92.31 NA 92.86 100.00 80.00 95.65 NA NA NA 90.00 100.00 100.00 95.00 100.00 100.00 100.00 NA NA 91.67 NA 90.91 NA K intron_retention nxf2,I_chr3L_16573041_16573135 chr3L - chr3L_16572692_16572751 chr3L_16572691_16572692;chr3L_16572751_16572752 chr3L_16572236_16572691;chr3L_16572752_16572985 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Thd1,RI_chr4_574364_578068 chr4 - chr4_577984_578068 chr4_577983_577984;chr4_578068_578069 chr4_577874_577983;chr4_578069_578121 6.90 NA NA NA NA NA 4.35 7.14 18.52 NA NA 0.00 NA NA NA 16.67 NA NA NA 5.26 NA NA NA NA NA 15.38 NA NA NA NA NA NA NA 12.50 NA NA NA NA NA 6.67 NA 18.18 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA K jcn_only_AA Sec16,I_chrX_12501913_12502010,I_chrX_12502899_12502973 chrX + chrX_12502899_12502973;chrX_12502899_12502967 chrX_12502899_12502970 chrX_12502799_12502898;chrX_12502974_12503073 8.82 5.77 14.06 10.48 9.76 16.67 9.46 10.64 8.00 12.31 16.22 6.36 7.55 7.55 8.82 7.22 6.06 9.62 13.41 7.44 0.00 9.33 9.09 4.08 6.82 4.35 15.79 7.84 7.89 4.40 8.33 8.75 11.67 11.11 17.02 3.85 5.45 20.00 10.53 10.49 9.30 7.56 5.26 13.70 5.88 7.43 5.41 9.00 9.09 14.29 10.00 8.00 8.57 5.00 13.95 15.25 13.16 6.37 K cassette HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13170581_13178924;chrX_13170581_13179235 chrX_13170581_13176198;chrX_13176263_13179235,chrX_13176263_13178924 chrX_13176199_13176262 chrX_13170481_13170580;chrX_13179236_13179281 96.97 98.41 98.48 96.63 95.74 98.39 90.62 96.38 96.62 96.97 100.00 99.05 96.49 91.43 98.53 95.40 96.83 98.11 95.95 96.61 98.08 94.64 95.45 98.41 97.44 92.19 94.74 100.00 91.84 97.26 94.52 97.14 97.26 99.10 93.22 90.91 98.70 98.18 98.46 98.44 90.48 96.85 98.08 96.97 90.32 96.43 97.78 96.81 97.71 97.67 93.98 95.65 94.59 96.55 97.65 97.14 100.00 97.44 K jcn_only_AA CG2225,Ef2b,I_chr2L_21681559_21681721,I_chr2L_21681559_21682037,I_chr2L_21681559_21737600,I_chr2L_21681561_21682041,I_chr2L_21681805_21682038 chr2L - chr2L_21681559_21682038 chr2L_21681805_21682038 chr2L_21682039_21682137;chr2L_21681461_21681558 0.01 0.00 0.02 0.02 0.00 0.03 0.00 0.00 0.01 0.00 0.00 0.01 0.02 0.02 0.00 0.03 0.00 0.02 0.00 0.01 0.00 0.04 0.01 0.01 0.00 0.00 0.01 0.03 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.01 0.00 0.00 0.01 0.00 0.04 0.05 0.02 0.00 0.03 0.02 0.00 0.02 0.00 0.03 0.00 0.02 0.03 0.02 0.00 0.00 0.00 K intron_retention hppy,I_chr2R_15066378_15066915,I_chr2R_15105700_15106080,I_chr2R_15106144_15108248 chr2R + chr2R_15066304_15067003 chr2R_15066303_15066304;chr2R_15067003_15067004 chr2R_15066297_15066303;chr2R_15067004_15067015 100.00 100.00 100.00 96.67 100.00 100.00 97.14 96.88 95.92 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 91.67 94.44 100.00 92.86 94.74 100.00 100.00 92.31 100.00 100.00 NA 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 92.31 100.00 NA 100.00 100.00 100.00 92.31 100.00 NA 100.00 NA 100.00 97.22 NA 100.00 100.00 100.00 NA 95.00 NA NA 92.86 K jcn_only_AD Cctgamma chr3R + chr3R_12473409_12473557;chr3R_12473318_12473557;chr3R_12473420_12473557;chr3R_12473424_12473557;chr3R_12473464_12473557 chr3R_12473479_12473557 chr3R_12473558_12473651;chr3R_12473311_12473317 3.00 1.53 5.71 2.40 3.96 1.67 1.84 4.95 4.24 6.98 3.00 5.70 1.11 4.59 3.70 1.99 4.46 4.55 2.06 4.11 6.19 0.48 1.29 1.55 1.61 2.78 0.76 0.00 0.00 3.33 4.35 5.00 11.11 3.36 4.35 3.39 0.70 0.00 0.94 0.00 9.09 3.23 3.41 0.00 3.17 7.32 0.00 7.69 6.01 0.88 0.77 0.00 2.94 1.61 3.15 0.00 1.42 3.39 K jcn_only_AD Abi,RI_chr3R_9946195_9946332 chr3R - chr3R_9947835_9948084 chr3R_9947835_9947999 chr3R_9947468_9947834;chr3R_9948085_9948101 99.34 98.68 99.04 100.00 100.00 100.00 100.00 99.34 99.10 100.00 100.00 98.58 100.00 100.00 94.92 99.41 98.90 98.97 98.82 99.38 100.00 100.00 99.39 98.10 100.00 96.39 100.00 97.62 97.81 100.00 98.55 100.00 99.68 99.34 99.11 100.00 99.32 99.13 97.32 99.64 100.00 98.50 98.53 100.00 99.58 100.00 96.00 99.75 98.84 96.09 98.59 94.52 98.35 100.00 98.10 98.77 99.16 99.76 K jcn_only_AA CG5850,I_chr2L_9963013_9963451 chr2L - chr2L_9961615_9961728 chr2L_9961618_9961728 chr2L_9961729_9961775;chr2L_9961359_9961614 72.73 75.23 66.92 66.67 77.19 77.38 73.28 72.48 75.41 78.85 71.59 70.39 72.22 72.29 76.92 75.51 76.92 75.73 70.42 75.78 74.77 64.44 69.91 75.21 72.22 79.10 74.31 63.01 77.78 75.89 67.29 64.21 59.88 78.17 72.73 60.38 70.43 68.75 79.58 72.08 73.17 72.86 74.24 75.58 71.36 68.60 69.57 68.69 73.08 64.71 73.33 64.41 67.59 73.50 79.17 74.29 71.67 72.60 K intron_retention CG16710,CG18754 chr3R + chr3R_19508301_19508491 chr3R_19508300_19508301;chr3R_19508491_19508492 chr3R_19508225_19508300;chr3R_19508492_19509099 0.00 0.00 0.00 8.57 0.00 0.00 0.00 2.44 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K jcn_only_AD CG11771 chr3R + chr3R_20757959_20758015 chr3R_20757963_20758015 chr3R_20758016_20760641;chr3R_20757811_20757958 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 1.79 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.90 2.00 0.00 0.00 1.28 0.00 3.03 0.00 0.00 0.00 2.82 0.00 1.67 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 3.64 NA 1.15 0.00 0.00 0.00 0.00 3.77 0.00 0.00 1.39 0.00 K cassette shot,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9753001_9753565 chr2R_9753001_9753323;chr2R_9753411_9753565 chr2R_9753324_9753410 chr2R_9752056_9753000;chr2R_9753566_9753631 0.41 0.62 0.65 0.35 0.00 0.00 0.81 0.41 0.21 0.98 0.00 0.33 0.83 0.75 0.63 0.56 0.56 0.00 0.68 0.27 0.00 0.66 0.39 0.50 0.00 0.83 1.05 1.04 0.00 0.00 0.56 0.00 0.73 0.39 0.00 0.93 0.33 0.00 0.00 0.53 0.00 0.70 0.00 0.00 1.50 0.00 1.00 1.23 0.34 0.00 0.00 0.00 0.00 0.93 0.51 0.52 0.49 1.33 K jcn_only_AD RI_chrX_2622435_2622577,CG2712,RI_chrX_2627170_2627263,RI_chrX_2627204_2627246 chrX + chrX_2627170_2627263 chrX_2627204_2627263 chrX_2627264_2627326;chrX_2627104_2627169 71.92 NA NA 73.08 NA NA NA 72.41 75.00 NA NA 70.00 NA NA 80.00 NA NA NA NA 83.87 NA NA 75.00 NA NA NA NA NA 46.43 NA 51.22 51.61 81.25 78.26 NA NA NA NA 78.26 59.09 53.33 69.57 NA 82.61 63.64 67.35 NA 59.62 57.14 NA 71.43 NA NA 60.00 NA 90.91 82.61 76.36 K intron_retention CG8372,RI_chr2L_8212717_8212766,RI_chr2L_8212802_8212867 chr2L - chr2L_8212693_8212766 chr2L_8212692_8212693;chr2L_8212766_8212767 chr2L_8212617_8212692;chr2L_8212767_8212801 45.24 44.74 41.03 57.78 45.45 41.03 37.84 44.44 43.33 33.33 48.28 50.75 52.94 48.15 52.08 52.08 44.00 45.16 56.67 46.91 52.00 33.85 45.45 42.86 64.52 61.29 53.70 65.00 74.14 50.00 34.09 37.50 63.16 40.00 33.33 40.00 43.86 40.54 43.75 46.48 44.83 45.61 46.43 45.24 48.89 36.51 32.79 41.18 47.06 55.00 46.67 35.71 40.35 39.53 54.84 46.81 44.26 37.50 K intron_retention heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27801688_27805244 chr3R_27801687_27801688;chr3R_27805244_27805245 chr3R_27801597_27801687;chr3R_27805245_27805341 7.28 6.67 0.00 0.00 NA NA NA 8.11 16.67 NA 0.00 4.08 NA NA 6.67 13.33 NA 0.00 10.53 7.41 NA NA NA NA NA 7.14 NA NA NA NA 10.53 NA NA 5.88 NA NA NA NA NA 0.00 NA 11.76 NA NA NA 13.33 NA 9.52 8.82 NA NA NA NA NA 0.00 NA NA 12.50 K intron_retention CG34124,CG34125,CG3756 chr2L + chr2L_4965823_4965881 chr2L_4965822_4965823;chr2L_4965881_4965882 chr2L_4965692_4965822;chr2L_4965882_4966400 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 1.09 0.00 0.00 0.00 2.90 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 2.94 0.91 0.00 0.00 0.00 0.00 N intron_retention JhI-26,I_chr2R_12177114_12177266 chr2R + chr2R_12178379_12178432 chr2R_12178378_12178379;chr2R_12178432_12178433 chr2R_12178433_12178520 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG42553,I_chr3L_834336_834491 chr3L + chr3L_834336_834491 chr3L_834336_834391 chr3L_834236_834335;chr3L_834492_834591 96.53 89.47 97.50 100.00 95.45 100.00 99.12 100.00 97.44 84.00 95.00 96.83 100.00 93.10 97.44 98.78 96.30 100.00 100.00 98.11 95.24 88.46 100.00 90.00 96.97 100.00 94.12 97.56 97.06 91.43 92.00 96.30 92.59 98.44 94.44 90.57 100.00 95.83 87.50 91.67 98.28 100.00 96.30 96.00 91.18 97.40 96.77 94.23 100.00 95.83 94.00 90.00 NA 93.55 100.00 93.02 96.88 97.50 K intron_retention CG30090,RI_chr2R_11577574_11577625 chr2R + chr2R_11577570_11577625 chr2R_11577569_11577570;chr2R_11577625_11577626 chr2R_11577474_11577569;chr2R_11577626_11577671 3.74 2.56 5.66 8.33 0.00 0.00 8.82 3.31 4.92 NA 6.52 2.82 5.88 0.00 0.00 4.88 2.27 5.08 9.09 4.35 1.85 7.69 12.50 3.70 7.69 7.14 12.90 NA 11.11 7.14 5.56 0.00 3.23 0.00 0.00 25.00 0.00 0.00 0.00 10.71 13.33 3.74 5.41 0.00 3.03 4.35 0.00 0.00 4.85 5.00 2.70 0.00 2.27 0.00 4.26 0.00 1.19 6.25 K jcn_only_AA dah,I_chrX_15223901_15223968,I_chrX_15232958_15233665 chrX + chrX_15222986_15223051 chrX_15222986_15223042 chrX_15222858_15222985;chrX_15223052_15223900 100.00 100.00 NA NA NA NA NA 92.86 100.00 NA NA 96.67 NA NA NA 100.00 NA NA NA 100.00 NA NA 100.00 100.00 NA NA 95.24 NA NA NA 100.00 NA 92.59 100.00 NA NA 100.00 NA 100.00 97.06 NA 100.00 NA NA 95.45 NA 96.77 100.00 93.33 95.83 NA 95.65 NA NA NA NA NA NA K intron_retention CG7849 chr2R + chr2R_1964879_1964927 chr2R_1964878_1964879;chr2R_1964927_1964928 chr2R_1964666_1964878;chr2R_1964928_1965538 0.00 0.00 NA NA NA NA NA NA 9.52 NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA 0.00 NA 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA K intron_retention VhaPPA1-1,I_chr3R_10728476_10728933,RI_chr3R_10728613_10728929,I_chr3R_10728645_10728933 chr3R - chr3R_10728613_10728929 chr3R_10728612_10728613;chr3R_10728929_10728930 chr3R_10728545_10728612;chr3R_10728930_10729029 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD yellow-h,CG1674,F_chr4_252231_252560,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_252227_252560;chr4_252254_252560 chr4_251522_252560 chr4_252561_252603;chr4_251483_251521 0.00 NA NA NA NA NA NA 0.00 4.55 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Cctgamma chr3R + chr3R_12473409_12473557;chr3R_12473318_12473557;chr3R_12473479_12473557;chr3R_12473420_12473557;chr3R_12473424_12473557 chr3R_12473464_12473557 chr3R_12473558_12473651;chr3R_12473311_12473317 0.00 0.76 0.00 0.00 0.00 0.00 1.84 0.99 0.00 2.33 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 1.39 0.00 1.04 0.00 0.00 0.87 1.67 0.00 0.00 1.45 0.00 0.00 0.90 0.00 0.00 0.00 0.65 1.14 2.41 1.59 0.00 2.33 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 K jcn_only_AA CG31998,I_chr4_225419_226294 chr4 - chr4_225201_225265 chr4_225219_225265 chr4_225266_225418;chr4_225086_225200 10.00 NA NA 6.52 NA NA 11.90 17.24 10.00 NA NA 13.64 NA 23.08 NA 10.00 NA NA 9.38 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 12.00 NA NA NA NA NA NA NA 5.26 9.52 NA NA NA NA NA 6.12 NA NA NA NA NA 17.39 NA NA NA K jcn_only_AA CG1599,RI_chr2R_5728855_5728907,I_chr2R_5728977_5729044,I_chr2R_5729744_5729805 chr2R - chr2R_5728977_5729044 chr2R_5728981_5729044 chr2R_5729045_5729112;chr2R_5728914_5728976 99.44 99.36 99.19 100.00 100.00 100.00 100.00 99.02 99.23 98.67 100.00 100.00 99.18 100.00 99.44 100.00 98.94 98.58 100.00 99.68 99.20 100.00 98.90 98.66 98.99 100.00 99.41 98.55 100.00 97.98 98.48 100.00 99.07 98.99 100.00 100.00 98.48 97.35 100.00 99.11 98.71 99.61 97.03 100.00 100.00 98.61 99.49 99.27 100.00 100.00 99.39 100.00 100.00 100.00 100.00 100.00 99.39 99.32 K alternative_donor CG13367 chrX + chrX_539947_540022 chrX_539951_540022 chrX_540023_540419;chrX_538794_539946 0.00 0.00 NA 6.25 NA NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA 0.00 3.23 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 5.56 0.00 0.00 NA 0.00 3.33 NA 0.00 0.00 0.00 K alternative_donor Rab30,I_chr2L_7032178_7032236 chr2L - chr2L_7032178_7032244;chr2L_7032178_7032310;chr2L_7032178_7032321 chr2L_7032178_7032236 chr2L_7032078_7032177;chr2L_7032322_7032336 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 K cassette CG42555 chr2L + chr2L_16896358_16897487 chr2L_16896358_16896808;chr2L_16896905_16897487 chr2L_16896809_16896904 chr2L_16896237_16896357;chr2L_16897488_16898037 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 NA NA 1.75 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 NA 0.00 0.00 0.00 NA 0.00 3.57 0.00 NA 0.00 1.47 3.57 5.56 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K intron_retention mRpS17 chr2R - chr2R_20061719_20061782 chr2R_20061718_20061719;chr2R_20061782_20061783 chr2R_20061187_20061718;chr2R_20061783_20061938 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 5.08 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 K alternative_acceptor Mocs1 chr3L + chr3L_11065511_11065569;chr3L_11065511_11065549 chr3L_11065511_11065661 chr3L_11064659_11065510;chr3L_11065662_11066454 31.58 40.91 27.27 25.81 9.09 27.78 22.86 43.33 32.43 42.86 46.15 27.59 46.15 30.77 38.89 14.81 9.09 17.65 35.00 35.14 53.33 31.82 27.91 33.33 22.22 38.89 40.48 34.48 44.62 21.88 33.33 32.43 14.29 25.00 28.00 45.16 24.00 33.33 28.12 30.00 34.69 26.47 20.00 25.64 37.74 39.53 28.57 36.36 37.50 25.00 34.29 22.22 26.67 26.67 31.58 20.83 35.48 32.14 K jcn_only_AA CG30372,coilin,I_chr2R_4012973_4013037,RI_chr2R_4012976_4013037 chr2R - chr2R_4012976_4013037;chr2R_4012973_4013037 chr2R_4012979_4013037 chr2R_4013038_4013137;chr2R_4012876_4012972 81.93 81.25 73.08 89.19 80.95 77.27 86.36 86.36 85.00 NA 85.00 73.68 78.26 NA 77.27 82.93 75.00 86.36 86.96 82.93 80.95 NA 78.57 95.45 78.26 79.17 83.87 NA NA 84.62 84.09 NA 92.31 86.05 80.00 NA 79.17 NA NA 72.97 95.00 79.59 NA 73.53 76.00 88.10 63.41 NA 92.86 76.00 76.67 82.61 NA NA 84.62 83.33 70.83 90.32 K alternative_acceptor par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,EF_chr2R_15349994_15351814,F_chr2R_15349994_15351846,noncoding_8037,I_chr2R_15350149_15350210,FI_chr2R_15350149_15351814,I_chr2R_15350437_15351814,I_chr2R_15350437_15351825,I_chr2R_15350905_15351814,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15350149_15350210;chr2R_15350149_15351814 chr2R_15350149_15351846 chr2R_15350068_15350148;chr2R_15351847_15351914 16.67 33.33 33.33 33.33 33.33 33.33 0.00 0.00 0.00 33.33 NA 25.00 33.33 12.50 0.00 9.09 0.00 20.00 16.67 8.33 20.00 0.00 41.67 33.33 20.00 27.27 NA 0.00 20.00 0.00 11.11 NA 33.33 0.00 0.00 0.00 NA NA 66.67 14.29 0.00 9.09 0.00 20.00 NA 50.00 0.00 20.00 7.69 NA 20.00 14.29 NA NA 16.67 NA 25.00 0.00 K jcn_only_AD CG18624,RI_chrX_7787450_7787620,RI_chrX_7787450_7787687,RI_chrX_7787524_7787687 chrX - chrX_7787524_7787782 chrX_7787524_7787620 chrX_7787424_7787523;chrX_7787783_7787787 27.70 12.37 11.86 22.98 11.56 7.65 23.96 20.13 11.68 44.00 10.53 12.77 15.71 14.47 9.23 20.82 11.39 10.43 13.24 8.66 11.76 67.39 28.30 46.67 33.33 25.41 78.57 NA 79.31 55.17 17.19 46.27 58.44 14.52 60.00 71.79 48.39 30.61 40.48 30.38 51.52 9.41 16.46 62.16 21.94 55.74 51.92 52.70 11.27 57.14 46.81 28.12 27.27 61.90 8.82 52.08 34.34 43.04 K intron_retention osa chr3R - chr3R_13519178_13519245 chr3R_13519177_13519178;chr3R_13519245_13519246 chr3R_13514880_13519177;chr3R_13519246_13519327 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Rm62,I_chr3R_1827459_1827554,I_chr3R_1828444_1829394,I_chr3R_1828476_1829394 chr3R - chr3R_1827459_1827784 chr3R_1827458_1827459;chr3R_1827784_1827785 chr3R_1827359_1827458;chr3R_1827785_1828820 42.86 41.67 58.33 57.14 58.33 NA 56.25 55.56 52.00 40.91 46.15 36.36 50.00 50.00 53.85 36.84 57.14 45.45 42.86 40.00 41.67 NA 47.06 50.00 41.67 25.00 29.63 40.00 47.06 50.00 35.71 33.33 22.22 54.55 66.67 42.86 26.32 42.86 55.00 50.00 40.00 66.67 40.00 33.33 33.33 40.74 58.33 27.27 46.15 42.86 39.13 30.77 29.17 43.75 NA 44.00 50.00 36.36 K cassette bol,RI_chr3L_9117011_9118271 chr3L - chr3L_9106588_9118266;chr3L_9106588_9118271 chr3L_9106588_9116715;chr3L_9116901_9118266,chr3L_9116901_9118271 chr3L_9116716_9116900 chr3L_9106512_9106587;chr3L_9118272_9118272 100.00 NA NA NA NA NA 100.00 87.50 91.67 NA NA 100.00 NA 100.00 NA 100.00 NA NA 85.71 NA NA NA NA NA NA NA NA NA NA NA 71.43 NA NA 100.00 NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA N jcn_only_AA Droj2,RI_chr3R_9207981_9208471,RI_chr3R_9208529_9209185 chr3R + chr3R_9207981_9209956;chr3R_9207981_9208471 chr3R_9207981_9209185 chr3R_9207926_9207980;chr3R_9209957_9210301 97.98 99.30 99.38 81.43 100.00 99.72 97.03 93.36 97.53 99.72 99.40 96.97 96.65 96.73 99.22 98.71 99.67 97.08 97.62 99.54 100.00 97.52 98.20 99.78 93.94 91.43 95.37 96.29 97.06 98.42 99.66 97.18 99.28 97.10 99.80 98.68 96.68 97.36 97.48 98.29 96.74 98.08 99.44 96.25 95.99 97.73 99.57 98.26 97.43 100.00 97.98 99.71 98.26 99.54 97.58 97.87 97.06 98.99 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2388671_2390808 chrX_2388671_2389073;chrX_2389272_2389980;chrX_2390067_2390493;chrX_2390627_2390808 chrX_2389074_2389271;chrX_2389981_2390066;chrX_2390494_2390626 chrX_2388641_2388670;chrX_2390809_2390957 60.00 NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette sw chrX - chrX_20106821_20107156 chrX_20106821_20106877;chrX_20107025_20107156 chrX_20106878_20107024 chrX_20106583_20106820;chrX_20107157_20107424 1.47 1.27 1.28 0.00 1.47 1.72 2.04 1.98 1.47 1.72 1.23 0.95 1.41 1.96 1.11 2.22 1.54 1.49 1.52 1.76 2.53 1.46 1.15 3.77 1.96 2.90 0.00 0.00 0.98 1.25 2.78 0.99 1.18 1.94 0.00 1.19 1.95 2.41 2.35 0.65 1.32 2.00 1.67 1.35 2.34 1.83 0.00 1.52 1.79 1.47 1.37 0.00 3.57 1.72 1.10 2.44 1.10 1.16 K alternative_acceptor RI_chr3L_19994894_19994949,CG7668,RI_chr3L_19995983_19996407 chr3L + chr3L_19996093_19996407 chr3L_19996093_19996402 chr3L_19995858_19996092;chr3L_19996408_19996507 74.45 72.73 63.16 70.00 75.00 76.47 67.44 75.68 73.85 80.00 80.00 80.56 66.67 65.38 84.00 67.44 62.50 76.00 78.57 71.93 88.24 88.89 72.41 84.21 72.73 80.95 77.27 80.00 81.82 89.47 65.71 90.00 76.47 71.79 83.33 76.92 75.00 64.29 66.67 84.62 71.43 78.79 61.11 70.83 75.00 73.91 73.33 61.11 72.73 78.57 89.47 66.67 NA 63.64 69.57 71.43 76.19 70.00 K alternative_donor Pi3K92E,I_chr3R_16459436_16459551,I_chr3R_16459436_16459848 chr3R - chr3R_16459436_16459848;chr3R_16459436_16460340;chr3R_16459436_16460287;chr3R_16459436_16459551 chr3R_16459436_16460267 chr3R_16459336_16459435;chr3R_16460341_16460435 71.43 72.22 73.68 55.26 50.00 71.43 74.07 62.50 71.43 88.89 66.67 65.79 78.95 60.71 63.64 59.46 52.94 57.14 76.19 66.67 69.23 75.00 66.67 93.33 90.91 88.24 68.42 76.92 75.00 60.00 64.00 100.00 64.29 63.33 73.33 63.64 73.68 81.82 75.00 72.97 57.14 78.12 73.33 78.57 100.00 66.67 70.00 80.00 75.00 62.50 66.67 61.11 100.00 100.00 66.67 41.67 72.73 71.43 K jcn_only_AD CG12703 chrX + chrX_19645123_19645380;chrX_19645198_19645380;chrX_19645200_19645380;chrX_19645202_19645380;chrX_19645171_19645380 chrX_19644924_19645380 chrX_19645381_19645579;chrX_19644833_19644923 4.58 5.75 2.92 17.44 2.06 9.41 2.48 12.71 7.25 5.71 2.50 3.86 2.86 6.12 3.17 0.00 6.60 11.43 5.45 6.12 2.73 2.68 8.33 9.80 1.52 2.41 6.03 3.64 0.00 5.92 1.67 1.10 0.32 6.42 5.13 0.87 7.06 3.23 6.45 4.58 0.77 5.78 4.90 3.67 3.70 2.99 9.18 0.47 5.86 0.00 7.20 3.12 3.03 7.58 7.14 7.92 9.80 0.50 K alternative_last_exon CdGAPr,fs(2)ltoPP43,E_chr2L_19794633_19794811 chr2L - chr2L_19793403_19794582 chr2L_19794309_19794582 chr2L_19793224_19793402 chr2L_19793486_19794308 chr2L_19794583_19794632 21.88 20.45 21.43 45.45 18.42 20.00 33.87 37.50 31.11 9.09 35.71 22.39 36.36 35.29 22.50 45.90 32.35 25.00 33.33 23.75 23.33 17.81 21.88 20.00 18.42 17.39 34.78 39.47 17.86 15.28 28.95 13.33 18.28 32.26 22.86 14.00 11.59 14.29 8.47 13.89 16.42 24.36 31.43 13.85 14.63 19.75 19.57 9.82 29.49 32.73 22.81 23.08 14.58 18.18 24.44 18.97 22.86 10.32 N cassette kuz,E_chr2L_13550294_13551106,CE_chr2L_13558833_13594255,I_chr2L_13636762_13637287 chr2L + chr2L_13551667_13609790 chr2L_13551667_13558799;chr2L_13558833_13609790 chr2L_13558800_13558832 chr2L_13551569_13551666;chr2L_13609791_13609888 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 35.29 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA K alternative_donor RpS27,I_chr3R_21072390_21072647,I_chr3R_21072390_21072710,I_chr3R_21072390_21073049 chr3R - chr3R_21072390_21073154 chr3R_21072390_21072710 chr3R_21072290_21072389;chr3R_21073155_21073223 1.03 0.82 0.56 0.26 0.23 0.46 0.75 0.45 0.41 1.67 0.53 0.65 1.00 0.59 0.44 0.82 0.37 0.53 0.42 0.61 0.74 4.14 6.30 2.95 2.85 0.77 8.71 9.69 5.67 4.17 0.69 1.75 2.00 0.46 4.56 6.43 1.03 2.86 1.69 1.73 3.18 0.36 0.46 3.86 0.75 3.57 2.55 1.37 0.80 2.22 10.70 2.11 1.49 17.24 0.52 3.12 1.04 0.75 K intron_retention RpS15Aa,I_chrX_13230413_13230955,I_chrX_13230413_13230960 chrX - chrX_13230413_13231537 chrX_13230412_13230413;chrX_13231537_13231538 chrX_13230313_13230412;chrX_13231538_13231572 0.05 0.05 0.03 0.03 0.04 0.04 0.03 0.04 0.04 0.11 0.02 0.05 0.05 0.03 0.05 0.05 0.06 0.02 0.06 0.03 0.04 0.18 0.13 0.07 0.03 0.03 0.29 1.11 0.14 0.12 0.03 0.04 0.08 0.03 0.25 0.22 0.03 0.03 0.04 0.11 0.21 0.05 0.03 0.07 0.04 0.11 0.07 0.11 0.12 0.10 0.19 0.05 0.15 0.14 0.06 0.06 0.07 0.09 K intron_retention CG8230 chr2R - chr2R_4832756_4832814 chr2R_4832755_4832756;chr2R_4832814_4832815 chr2R_4832633_4832755;chr2R_4832815_4833312 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 2.73 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5284,I_chr3L_16086347_16086804 chr3L + chr3L_16087871_16087928 chr3L_16087870_16087871;chr3L_16087928_16087929 chr3L_16087707_16087870;chr3L_16087929_16088142 0.00 0.00 0.00 3.49 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.97 0.00 0.00 1.34 0.00 0.00 0.00 0.78 0.95 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.26 0.00 1.51 0.00 0.00 3.30 0.00 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG18317,RI_chr2L_1718492_1723881 chr2L - chr2L_1718492_1718674;chr2L_1718492_1718739 chr2L_1718492_1718695 chr2L_1718421_1718491;chr2L_1718740_1718903 33.33 44.44 34.43 37.70 29.55 26.09 25.61 36.26 33.86 23.42 27.27 31.78 32.00 16.22 33.96 40.00 28.21 11.36 31.03 45.83 40.91 44.68 36.27 32.31 23.26 26.83 31.18 40.74 34.62 31.43 26.15 50.00 41.67 34.02 41.77 39.44 28.28 28.33 29.60 78.63 36.14 29.06 26.19 40.19 31.68 31.07 36.05 33.80 40.37 47.95 39.29 33.33 31.51 31.75 32.84 39.58 31.15 35.14 K intron_retention tho2 chr2L - chr2L_2137795_2137882 chr2L_2137794_2137795;chr2L_2137882_2137883 chr2L_2137468_2137794;chr2L_2137883_2137926 32.58 35.00 26.32 24.24 50.00 20.00 36.67 28.21 33.33 NA 40.91 26.19 30.00 33.33 21.88 30.77 36.36 22.22 31.82 39.13 40.00 61.11 34.21 27.59 46.67 46.67 19.05 31.58 61.54 25.00 26.32 25.00 24.24 35.48 36.84 52.17 29.03 43.75 39.13 23.33 59.46 35.56 35.71 29.17 20.51 35.71 29.17 48.98 29.27 37.93 28.95 41.67 22.73 24.14 25.93 47.83 22.22 35.71 K intron_retention PMCA,I_chr4_350028_350896,E_chr4_350055_363541,I_chr4_350064_350896,I_chr4_350959_363547,I_chr4_352629_354970,I_chr4_352629_358161,RI_chr4_355160_363547,I_chr4_371836_372509,I_chr4_373671_374568,I_chr4_376108_379519 chr4 - chr4_350966_352023 chr4_350965_350966;chr4_352023_352024 chr4_350897_350965;chr4_352024_352628 84.21 82.61 84.00 97.14 63.64 90.00 100.00 87.72 88.52 NA 58.82 79.07 100.00 80.56 86.36 93.10 85.71 91.67 81.48 82.93 70.59 86.67 78.79 89.66 94.12 64.29 76.67 NA 83.33 73.33 56.00 58.33 NA 93.18 86.96 92.31 NA 63.16 63.64 85.71 91.67 84.91 90.91 73.53 80.00 76.67 73.68 84.21 94.74 80.95 94.29 100.00 90.00 73.68 84.21 73.91 80.77 85.71 K jcn_only_AD CG5484 chr3R + chr3R_22543749_22544049;chr3R_22543734_22544049 chr3R_22543722_22544049 chr3R_22544050_22544588;chr3R_22543570_22543721 98.23 98.39 100.00 99.24 98.90 97.47 99.24 99.36 98.14 97.01 99.20 98.58 98.96 98.53 98.32 93.94 98.94 100.00 98.85 99.47 97.53 98.70 97.16 95.97 94.81 96.10 94.67 97.06 97.53 98.75 98.80 98.04 100.00 97.81 98.39 97.37 96.10 95.87 100.00 96.46 97.14 98.89 98.73 98.23 93.51 92.00 96.46 100.00 97.33 95.70 96.46 98.92 95.65 98.36 96.59 98.37 98.36 95.06 K alternative_acceptor CG3803,RI_chr2R_19840910_19840971 chr2R - chr2R_19840910_19840971 chr2R_19840914_19840971 chr2R_19840972_19841040;chr2R_19840850_19840909 100.00 100.00 90.91 92.31 88.89 87.50 100.00 100.00 95.24 100.00 NA 93.75 100.00 100.00 100.00 100.00 90.00 NA NA 100.00 100.00 100.00 88.89 88.89 NA 100.00 87.50 NA NA NA 91.67 88.89 NA 94.74 NA NA 100.00 100.00 91.67 100.00 100.00 100.00 NA NA 100.00 100.00 90.00 100.00 95.00 NA 100.00 NA NA NA 100.00 100.00 NA 87.50 K intron_retention TMS1 chr3L + chr3L_16407594_16407920 chr3L_16407593_16407594;chr3L_16407920_16407921 chr3L_16407384_16407593;chr3L_16407921_16408056 90.91 100.00 89.47 93.33 85.71 90.32 90.70 88.64 92.16 90.62 88.89 87.23 92.31 96.00 96.15 96.30 91.30 90.48 84.62 87.84 92.86 93.10 96.15 90.48 94.44 92.59 91.67 89.06 93.67 87.50 96.00 90.91 87.50 89.58 90.00 82.76 89.16 91.30 92.98 93.22 88.64 90.38 86.96 93.55 87.50 94.12 93.33 85.00 90.91 90.24 90.91 96.88 96.15 97.06 84.62 92.59 90.00 72.09 K intron_retention Tif-IA chr2L + chr2L_22250315_22250371 chr2L_22250314_22250315;chr2L_22250371_22250372 chr2L_22250120_22250314;chr2L_22250372_22250483 0.00 0.00 0.00 0.00 0.00 1.27 0.99 2.05 0.00 5.71 0.00 0.00 1.09 0.00 0.00 0.00 0.00 1.49 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.97 0.00 0.00 0.00 4.48 0.00 3.17 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 1.72 2.47 0.00 K intron_retention p47,Aldh-III,RE_chr2R_3355332_3355720,I_chr2R_3356541_3356614,RI_chr2R_3357578_3357636,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3354556_3354978 chr2R_3354555_3354556;chr2R_3354978_3354979 chr2R_3354549_3354555;chr2R_3354979_3354987 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 92.31 NA 100.00 100.00 NA 100.00 NA NA NA 92.86 NA NA 100.00 88.89 100.00 NA NA NA 100.00 NA 87.50 NA K cassette Hsc70-4,EI_chr3R_11068693_11068772 chr3R + chr3R_11068522_11070081 chr3R_11068522_11068631;chr3R_11068736_11070081 chr3R_11068632_11068735 chr3R_11068453_11068521;chr3R_11070082_11072336 0.06 0.06 0.09 0.00 0.08 0.10 0.08 0.05 0.05 0.13 0.15 0.08 0.06 0.05 0.00 0.07 0.00 0.06 0.09 0.04 0.07 0.02 0.07 0.11 0.14 0.00 0.14 0.18 0.19 0.05 0.07 0.11 0.02 0.06 0.03 0.03 0.08 0.12 0.00 0.15 0.17 0.06 0.06 0.06 0.11 0.12 0.04 0.12 0.06 0.05 0.06 0.05 0.12 0.09 0.00 0.07 0.00 0.05 K intron_retention CG9932,I_chr2L_13031395_13035824 chr2L - chr2L_13028540_13028867 chr2L_13028539_13028540;chr2L_13028867_13028868 chr2L_13027809_13028539;chr2L_13028868_13029642 15.38 21.43 NA 29.41 NA NA 22.22 14.29 10.71 NA NA 15.38 NA 0.00 0.00 13.33 NA NA 28.57 16.67 NA 12.24 11.11 NA NA NA NA 20.00 17.65 14.29 NA NA 18.37 10.53 NA 36.36 8.70 NA 16.67 10.34 NA 10.53 20.00 21.43 15.38 21.43 NA 25.71 8.33 15.38 NA NA NA NA 10.53 NA NA 0.00 K alternative_donor CG18317,RI_chr2L_1718492_1723881 chr2L - chr2L_1718492_1718674;chr2L_1718492_1718739 chr2L_1718492_1718695 chr2L_1718421_1718491;chr2L_1718740_1718903 37.93 47.62 38.46 42.11 34.78 30.30 29.55 41.30 38.24 26.19 33.33 36.62 38.46 22.73 41.18 43.48 30.43 16.67 36.11 49.02 46.43 46.27 38.71 36.17 26.47 33.33 33.33 42.25 37.93 34.48 28.95 50.85 45.24 38.89 42.22 42.00 32.91 32.56 33.77 78.63 39.22 32.43 30.00 42.47 35.94 35.48 40.91 37.06 43.75 51.28 41.18 38.10 35.29 35.29 37.84 41.86 33.33 38.54 K intron_retention jim,I_chr3L_22791582_22791898 chr3L - chr3L_22791579_22791901 chr3L_22791578_22791579;chr3L_22791901_22791902 chr3L_22791482_22791578;chr3L_22791902_22791998 14.29 NA NA 14.29 NA NA NA NA 0.00 NA NA 26.67 NA NA NA NA NA NA NA 9.52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 21.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Mlf,noncoding_7111,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CEI_chr2R_11826763_11827279 chr2R - chr2R_11824086_11824186 chr2R_11824085_11824086;chr2R_11824186_11824187 chr2R_11823989_11824085;chr2R_11824187_11824286 75.00 76.47 NA 71.88 NA NA NA 92.86 85.19 NA NA 70.97 NA 85.71 81.82 60.00 90.00 NA 76.92 79.17 NA 71.43 72.00 60.00 53.33 NA 75.00 58.82 59.09 73.68 60.00 93.75 69.23 76.47 75.00 63.16 73.33 75.00 85.00 81.08 70.00 71.43 NA 58.62 54.55 75.86 72.73 72.00 90.91 87.50 82.35 72.73 84.62 90.91 90.00 71.43 91.67 83.33 K alternative_acceptor CG2219,I_chr4_199813_199889,RI_chr4_202143_202194 chr4 - chr4_199463_199562 chr4_199507_199562 chr4_199563_199629;chr4_199407_199462 86.67 80.00 86.21 87.72 80.95 95.65 96.55 89.66 90.36 100.00 86.21 81.54 88.57 91.30 84.00 83.64 87.50 85.71 86.84 89.09 100.00 90.48 77.50 86.67 86.67 84.21 96.55 94.12 100.00 85.71 79.41 90.00 84.38 88.14 95.24 77.27 76.47 87.50 77.27 97.44 91.67 85.00 77.78 83.67 90.48 83.33 85.71 92.31 83.10 87.88 86.05 84.00 84.62 80.00 91.67 89.66 78.57 84.09 K alternative_acceptor CG4996,E_chr2R_13627553_13627643,I_chr2R_13629549_13629609 chr2R + chr2R_13629549_13629609 chr2R_13629549_13629605 chr2R_13629449_13629548;chr2R_13629610_13629709 93.33 87.50 90.00 100.00 87.50 NA 93.33 87.50 94.74 NA 88.89 91.67 NA NA 100.00 94.12 NA 90.00 100.00 96.30 NA 92.31 92.31 80.00 NA 100.00 90.00 100.00 100.00 88.89 78.57 90.00 91.67 92.31 100.00 100.00 100.00 NA 92.86 100.00 100.00 94.74 80.00 88.89 NA 100.00 NA 100.00 93.75 100.00 100.00 NA NA NA 81.82 NA NA NA K jcn_only_AA Pdp1,RI_chr3L_7809841_7810536,I_chr3L_7813130_7818683,I_chr3L_7831960_7846282 chr3L - chr3L_7809841_7810536;chr3L_7809826_7810536 chr3L_7809712_7810536 chr3L_7810537_7810636;chr3L_7809584_7809711 11.11 8.97 6.35 14.29 11.54 14.52 9.09 11.76 8.55 8.11 24.07 16.67 6.06 10.87 5.36 15.79 5.17 16.13 3.57 11.63 12.50 7.07 11.54 10.10 8.45 12.00 15.93 6.25 10.45 11.84 7.27 13.89 20.00 11.90 18.75 5.41 8.96 8.91 7.81 11.21 2.50 7.53 14.63 6.25 14.93 9.23 17.46 4.12 11.11 4.21 7.94 11.48 31.37 14.06 10.45 12.66 16.05 11.36 K intron_retention l(3)neo26,Cat chr3L + chr3L_18814350_18814406 chr3L_18814349_18814350;chr3L_18814406_18814407 chr3L_18814295_18814349;chr3L_18814407_18815454 14.58 7.22 19.51 44.00 8.57 20.45 28.81 13.04 9.09 9.18 13.56 23.26 14.29 13.16 20.00 27.59 8.16 14.81 14.04 23.33 18.52 23.33 26.73 10.74 26.56 37.50 24.39 30.19 27.59 15.52 11.11 15.38 19.59 12.50 9.88 61.70 7.91 7.89 8.27 11.76 32.93 14.66 18.18 8.99 15.60 16.06 4.50 14.58 16.19 10.08 8.18 12.66 4.55 9.64 13.89 9.43 9.09 14.58 K alternative_donor Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045316_16046104;chr3L_16045277_16046104;chr3L_16045275_16046104 chr3L_16045251_16046104 chr3L_16046105_16046204;chr3L_16045216_16045250 66.67 61.29 60.00 70.27 52.17 70.45 61.54 63.75 62.67 81.82 58.62 67.57 57.78 63.27 77.08 62.50 64.86 46.15 67.24 70.37 70.97 66.67 64.81 58.82 60.71 63.16 65.96 70.00 66.67 77.36 71.70 86.96 73.33 66.67 70.59 51.35 65.38 71.43 53.12 76.56 68.97 63.64 67.44 67.50 86.96 75.76 77.78 79.22 57.89 64.29 64.10 62.50 86.67 NA 55.93 70.83 75.00 91.07 K jcn_only_AD CG11984,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4839215_4839655;chr3R_4839215_4839561;chr3R_4839215_4839851;chr3R_4839215_4839728;chr3R_4839215_4839799 chr3R_4839215_4839889 chr3R_4839038_4839214;chr3R_4839890_4839901 8.00 0.00 9.09 10.00 NA NA NA 16.67 18.60 NA NA 9.09 NA NA NA NA NA NA 8.00 13.33 NA 0.00 4.76 NA NA 13.64 0.00 NA NA NA NA NA NA 13.64 NA NA NA NA NA 0.00 NA 17.14 NA 5.00 NA 4.55 NA NA 12.82 0.00 NA NA NA NA NA NA 0.00 0.00 K intron_retention myoglianin,RI_chr4_712986_714006,E_chr4_716066_716347,RI_chr4_716066_716482,RI_chr4_716153_716613,E_chr4_716172_716351 chr4 - chr4_716153_716322 chr4_716152_716153;chr4_716322_716323 chr4_716072_716152;chr4_716323_716675 88.89 NA NA 100.00 NA NA 87.50 89.47 78.79 NA NA 81.82 NA 87.50 NA 85.00 87.50 NA NA 90.91 NA NA 87.50 NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA 90.48 NA NA NA NA NA NA 95.00 NA 100.00 88.89 NA NA NA NA NA NA K alternative_donor Rrp42,RI_chr2R_11902769_11902844 chr2R + chr2R_11902769_11902844 chr2R_11902794_11902844 chr2R_11902845_11902944;chr2R_11902669_11902768 100.00 NA 100.00 100.00 100.00 100.00 92.31 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 93.75 92.31 90.00 100.00 100.00 NA 100.00 88.89 90.00 100.00 100.00 91.67 100.00 100.00 100.00 92.31 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 96.00 K intron_retention CG11984,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4839215_4839561 chr3R_4839214_4839215;chr3R_4839561_4839562 chr3R_4839038_4839214;chr3R_4839562_4839628 20.00 25.00 NA 20.00 NA NA NA 6.67 27.27 NA NA 25.00 NA NA NA 30.77 NA NA NA NA NA 5.00 NA NA NA NA 12.50 NA NA NA NA NA NA 33.33 NA NA NA NA NA 31.25 NA 14.29 NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA 14.29 K intron_retention fdl,RI_chr2R_8394261_8394315 chr2R - chr2R_8376586_8376650 chr2R_8376585_8376586;chr2R_8376650_8376651 chr2R_8376267_8376585;chr2R_8376651_8377386 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N multi_cassette CG1161,RI_chr3R_1181273_1181459,I_chr3R_1182079_1182146 chr3R + chr3R_1181273_1182146 chr3R_1181273_1181515;chr3R_1181665_1181724;chr3R_1181851_1181905;chr3R_1181959_1182146 chr3R_1181516_1181664;chr3R_1181725_1181850;chr3R_1181906_1181958 chr3R_1181173_1181272;chr3R_1182147_1182246 100.00 100.00 100.00 100.00 100.00 100.00 86.44 100.00 92.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.24 100.00 89.86 85.00 86.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 67.11 100.00 100.00 100.00 100.00 100.00 100.00 89.47 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 K intron_retention SMSr chr3L - chr3L_7368216_7368279 chr3L_7368215_7368216;chr3L_7368279_7368280 chr3L_7367142_7368215;chr3L_7368280_7368446 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Ant2,sesB chrX - chrX_10676714_10676809 chrX_10676713_10676714;chrX_10676809_10676810 chrX_10676413_10676713;chrX_10676810_10676873 66.67 NA 66.67 69.23 77.78 NA 72.73 50.00 68.42 NA NA 75.00 71.43 71.43 NA 58.33 NA 33.33 60.00 84.62 NA NA 75.00 50.00 NA 90.00 75.00 NA NA NA 72.73 NA NA 60.00 46.15 66.67 63.64 50.00 64.29 53.33 NA 76.47 66.67 75.00 35.71 81.82 NA 66.67 77.78 NA NA NA NA NA 50.00 58.33 NA NA K intron_retention CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_155591_155927,I_chr4_157014_157316,RI_chr4_157014_157504,I_chr4_157794_157864 chr4 + chr4_154340_155497 chr4_154339_154340;chr4_155497_155498 chr4_154254_154339;chr4_155498_155561 100.00 100.00 100.00 82.61 100.00 90.91 94.29 95.24 100.00 NA 100.00 90.00 100.00 95.24 100.00 100.00 93.33 90.91 96.00 100.00 88.89 NA 93.75 NA NA 100.00 90.91 NA NA 100.00 100.00 NA NA 96.67 100.00 100.00 100.00 NA NA 100.00 NA 93.10 91.30 85.71 NA 100.00 NA NA 97.22 NA 100.00 92.31 NA NA 100.00 NA NA NA K intron_retention CG42600,F_chr2R_5481088_5481893 chr2R - chr2R_5475836_5475895 chr2R_5475835_5475836;chr2R_5475895_5475896 chr2R_5475458_5475835;chr2R_5475896_5476310 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA 80.00 88.89 NA NA NA NA NA NA NA 81.25 NA NA NA NA NA NA NA 42.86 52.94 NA NA NA NA 53.33 53.85 NA 70.00 NA NA NA NA NA NA NA NA NA NA K cassette CG31342,I_chr3R_8813079_8814327,I_chr3R_8822346_8822403 chr3R + chr3R_8813079_8814327 chr3R_8813079_8813154;chr3R_8813207_8814327 chr3R_8813155_8813206 chr3R_8812979_8813078;chr3R_8814328_8814427 97.44 97.67 97.78 100.00 100.00 100.00 94.55 98.25 97.50 91.67 86.67 94.74 100.00 100.00 100.00 97.56 100.00 100.00 97.14 95.29 91.43 88.31 98.33 97.96 94.12 90.32 92.31 97.22 81.82 95.83 97.22 96.30 97.62 98.46 97.44 84.09 98.46 97.62 98.33 97.26 97.44 97.56 96.30 98.25 97.22 100.00 97.30 97.62 98.46 100.00 94.74 100.00 96.15 96.67 100.00 96.67 94.74 92.31 K intron_retention Pros45 chrX + chrX_21187223_21187285 chrX_21187222_21187223;chrX_21187285_21187286 chrX_21187054_21187222;chrX_21187286_21187430 0.78 0.91 0.48 0.38 0.00 0.62 0.78 0.78 0.49 0.00 0.00 1.06 0.00 1.88 0.00 0.97 0.00 0.56 0.00 0.76 0.00 1.24 1.00 2.03 2.68 0.55 3.55 0.00 14.08 0.00 0.72 2.15 0.47 0.72 1.43 1.71 0.44 1.02 0.00 1.49 2.19 1.20 0.00 0.90 1.38 0.60 0.00 1.88 0.90 0.55 0.87 0.00 1.13 1.06 0.84 0.00 1.20 0.83 N jcn_only_AA Nca,CG7646 chr3L + chr3L_19986423_19988473;chr3L_19986423_19987267;chr3L_19986423_19989780 chr3L_19986423_19986483 chr3L_19986365_19986422 0.00 NA 0.00 0.00 NA 0.00 19.57 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9346 chr2R + chr2R_16899784_16899839 chr2R_16899783_16899784;chr2R_16899839_16899840 chr2R_16899667_16899783;chr2R_16899840_16900126 0.00 NA NA 22.22 NA NA 7.14 NA 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA NA 5.56 NA NA NA 0.00 NA NA NA NA NA NA 52.63 NA 7.69 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA N intron_retention I_chrX_4000307_4003527,CG4857 chrX + chrX_4011429_4011996 chrX_4011428_4011429;chrX_4011996_4011997 chrX_4011323_4011428;chrX_4011997_4012308 100.00 100.00 100.00 53.85 NA 100.00 52.63 100.00 54.84 NA NA 100.00 NA 100.00 100.00 100.00 100.00 40.00 100.00 100.00 NA NA 36.00 100.00 NA 100.00 100.00 NA 100.00 57.14 69.23 NA 46.43 100.00 NA 100.00 NA NA 62.50 41.67 NA 59.26 43.75 NA NA 100.00 NA 57.14 40.00 NA 61.11 NA NA NA 47.83 100.00 45.45 NA K intron_retention Dhap-at,CG33494 chr3R - chr3R_21320143_21320838 chr3R_21320142_21320143;chr3R_21320838_21320839 chr3R_21319958_21320142;chr3R_21320839_21320926 0.00 0.00 0.00 0.27 0.00 0.31 0.29 0.38 0.56 0.00 0.00 0.42 0.28 0.00 0.00 0.28 0.82 0.00 0.00 0.36 0.00 0.67 0.00 0.00 0.00 0.00 1.13 1.06 0.27 0.00 0.17 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.18 0.44 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.30 0.31 0.00 K intron_retention phtf,I_chr2R_2629598_2630209 chr2R + chr2R_2632700_2632757 chr2R_2632699_2632700;chr2R_2632757_2632758 chr2R_2632551_2632699;chr2R_2632758_2632826 0.00 0.00 0.00 2.94 0.00 NA 0.00 0.00 0.00 NA 0.00 2.56 NA 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 2.86 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 4.55 0.00 0.00 NA 2.17 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 N intron_retention plx chr3R + chr3R_1532076_1532905 chr3R_1532075_1532076;chr3R_1532905_1532906 chr3R_1532054_1532075;chr3R_1532906_1533663 13.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 11.11 NA NA 13.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD HSPC300,I_chr2R_19915648_19915744,I_chr2R_19915648_19915903,I_chr2R_19915648_19916060 chr2R - chr2R_19915648_19915744;chr2R_19915648_19916136 chr2R_19915648_19915903 chr2R_19915548_19915647;chr2R_19916137_19916160 1.45 1.79 0.50 1.74 0.00 0.57 0.00 3.18 2.45 0.99 5.00 3.23 0.00 2.78 1.60 4.48 3.28 0.68 3.53 0.63 2.13 1.43 1.71 1.04 1.85 2.11 0.00 0.00 1.38 1.04 0.00 0.75 0.65 2.49 0.86 0.89 0.00 0.00 1.22 0.90 0.43 1.92 0.86 1.01 2.50 1.45 2.72 2.38 2.56 2.86 3.20 1.79 1.06 3.40 0.45 2.82 2.50 1.90 K intron_retention RpS25,I_chr3R_7041333_7041414,I_chr3R_7041347_7041413,I_chr3R_7041347_7041556,RI_chr3R_7044164_7044221 chr3R - chr3R_7041347_7041556 chr3R_7041346_7041347;chr3R_7041556_7041557 chr3R_7041267_7041346;chr3R_7041557_7041598 99.85 99.81 99.74 99.68 99.83 99.88 99.87 99.76 99.83 99.84 99.85 99.77 99.86 99.77 99.90 99.77 99.82 99.94 99.84 99.81 99.90 98.25 99.84 99.86 99.95 99.68 99.87 99.70 99.83 99.86 99.89 99.91 99.87 99.83 99.86 99.89 99.84 99.85 99.84 99.82 99.93 99.79 99.84 99.95 99.94 99.93 99.80 99.95 99.83 99.43 99.88 99.93 99.94 99.89 99.83 99.88 99.96 99.92 K intron_retention CG5001,I_chr2L_1191535_1191648 chr2L + chr2L_1186453_1191402 chr2L_1186452_1186453;chr2L_1191402_1191403 chr2L_1186350_1186452;chr2L_1191403_1191534 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 1.72 NA 0.00 0.00 NA 0.00 0.00 0.00 5.26 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 3.92 0.00 0.00 NA 0.00 0.00 0.00 2.63 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K jcn_only_AA CG14425,Sxl,CG14425_Sxl,CEF_chrX_6984538_6992033 chrX - chrX_6986204_6991030;chrX_6986156_6991030 chrX_6990969_6991030 chrX_6991031_6991040 62.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD M(2)21AB,I_chr2L_107839_110405,I_chr2L_107957_108587,I_chr2L_110878_111037,I_chr2L_112022_112689,RI_chr2L_132256_132482 chr2L + chr2L_108227_108587;chr2L_108102_108587;chr2L_107839_108587 chr2L_108347_108587 chr2L_108588_108687;chr2L_107833_107838 14.29 17.26 11.62 14.65 5.73 10.07 10.83 20.00 9.53 16.75 17.88 6.02 7.43 13.64 7.03 10.53 11.64 8.17 13.68 10.60 23.30 7.79 13.39 12.06 17.39 15.89 23.88 18.67 14.76 17.65 11.06 23.08 24.52 11.48 14.95 32.20 8.24 17.32 18.01 18.89 19.15 9.92 15.23 6.15 15.45 12.50 14.29 13.26 7.02 18.05 16.75 9.33 16.43 15.58 7.73 9.57 17.13 18.24 K alternative_acceptor CG4829,I_chrX_16717240_16717547 chrX + chrX_16717240_16717619;chrX_16717240_16717547 chrX_16717240_16717889 chrX_16717140_16717239;chrX_16717890_16718151 1.60 2.28 1.61 0.12 25.66 31.57 2.99 0.75 1.44 8.26 1.09 3.36 1.59 1.54 2.97 0.48 0.92 2.57 1.36 1.56 2.51 0.00 2.39 3.23 3.09 0.28 5.43 9.52 0.40 0.21 1.60 0.22 0.51 0.60 2.01 0.00 1.77 2.23 1.64 2.84 1.67 0.70 1.12 1.05 0.58 2.33 1.89 0.95 1.67 3.93 3.51 1.61 0.83 1.47 0.75 2.21 0.88 0.47 K alternative_acceptor Tm1 chr3R + chr3R_11113877_11113974 chr3R_11113877_11113951 chr3R_11113743_11113876;chr3R_11113975_11115161 87.50 NA NA 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Nup75,I_chr2R_14058825_14059758,I_chr2R_14058954_14059942 chr2R - chr2R_14052401_14052459 chr2R_14052400_14052401;chr2R_14052459_14052460 chr2R_14051736_14052400;chr2R_14052460_14052607 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 1.18 0.00 0.00 1.83 0.00 0.00 0.00 2.22 0.00 1.41 0.00 0.55 0.00 8.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 1.72 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Mvl,I_chr3R_16884191_16886355 chr3R - chr3R_16884191_16886003 chr3R_16884190_16884191;chr3R_16886003_16886004 chr3R_16884091_16884190;chr3R_16886004_16886210 9.09 6.45 10.00 6.06 4.35 0.00 4.00 0.00 6.67 13.04 9.09 5.26 13.04 0.00 16.67 4.35 12.50 9.09 0.00 12.20 7.14 11.76 10.53 6.06 5.56 14.29 12.00 20.00 40.00 18.52 0.00 11.11 21.74 12.50 8.70 18.75 0.00 7.41 13.04 12.77 12.50 7.32 0.00 5.56 5.56 20.00 15.00 21.21 9.68 12.50 0.00 0.00 0.00 NA 6.06 NA 15.00 16.67 K intron_retention CG7011 chr3L - chr3L_15155938_15156086 chr3L_15155937_15155938;chr3L_15156086_15156087 chr3L_15155600_15155937;chr3L_15156087_15156438 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA NA NA 0.00 8.33 NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 NA K intron_retention Mi-2,Su(Tpl) chr3L - chr3L_19890509_19902346 chr3L_19890508_19890509;chr3L_19902346_19902347 chr3L_19890418_19890508;chr3L_19902347_19902410 23.20 30.77 NA 31.25 NA NA 31.82 36.00 23.33 NA NA 21.43 33.33 NA NA 20.00 25.00 NA 18.75 14.29 NA 35.00 8.33 NA NA NA 13.33 23.08 NA NA NA NA NA 17.86 25.00 NA 10.00 NA NA 28.57 NA 26.32 NA 22.22 NA NA NA NA 25.00 NA 21.05 NA NA NA 6.67 NA NA NA N alternative_donor CG8051,I_chrX_19198128_19201351 chrX - chrX_19198128_19199326;chrX_19198128_19201671 chrX_19198128_19199330 chrX_19198028_19198127;chrX_19201672_19201734 0.00 0.00 0.00 8.33 0.00 0.00 6.67 11.11 5.56 0.00 0.00 5.88 0.00 12.50 20.00 0.00 0.00 0.00 10.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 20.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 12.50 0.00 0.00 0.00 0.00 16.67 0.00 0.00 0.00 0.00 0.00 20.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.67 0.00 K jcn_only_AA CG31158,CI_chr3R_18432763_18433113,CG31159 chr3R + chr3R_18433031_18433113 chr3R_18433031_18433110 chr3R_18432919_18433030;chr3R_18433114_18433213 27.59 28.33 27.59 23.46 NA 58.14 26.15 34.44 28.57 20.00 NA 32.88 NA 44.19 42.31 20.83 68.97 41.67 36.36 22.83 NA 29.51 26.03 20.25 18.60 50.00 22.73 32.14 18.18 30.00 37.50 23.64 25.00 37.80 30.00 25.53 20.95 28.33 22.97 27.18 25.53 20.34 41.67 10.00 34.09 27.69 21.21 24.59 33.70 25.58 30.00 23.26 27.59 19.05 40.62 18.75 31.75 33.77 K intron_retention tws,I_chr3R_5960899_5960978,CG6241 chr3R - chr3R_5959310_5960101 chr3R_5959309_5959310;chr3R_5960101_5960102 chr3R_5958937_5959309;chr3R_5960102_5960121 47.99 50.00 57.14 58.06 NA 66.67 42.59 47.83 40.98 NA 58.33 48.57 31.03 48.15 47.06 50.00 43.75 43.75 52.00 48.48 54.55 30.77 40.91 50.00 NA 46.15 52.94 NA NA NA 50.00 NA NA 43.59 46.67 25.00 70.00 54.55 NA 63.16 NA 47.37 42.86 35.00 NA 46.15 36.36 NA 58.14 41.67 36.36 53.33 NA NA 59.09 NA NA NA K alternative_donor cnc,I_chr3R_19014852_19016738,I_chr3R_19046366_19046507,I_chr3R_19046619_19047567 chr3R - chr3R_19046366_19046507;chr3R_19046366_19047563 chr3R_19046366_19047567 chr3R_19046266_19046365;chr3R_19047568_19047667 45.45 60.00 62.50 45.45 33.33 60.00 40.00 50.00 44.44 66.67 50.00 42.86 66.67 50.00 50.00 44.44 60.00 25.00 25.00 55.56 NA 27.27 45.45 60.00 25.00 75.00 25.00 0.00 42.86 20.00 46.67 50.00 36.36 36.36 50.00 44.44 NA NA 25.00 41.18 66.67 36.84 71.43 50.00 NA 50.00 NA 33.33 57.14 NA 57.14 40.00 NA NA 37.50 33.33 NA 50.00 K jcn_only_AA mask,I_chr3R_20073365_20073461 chr3R + chr3R_20066767_20066839 chr3R_20066767_20066836 chr3R_20065551_20066766;chr3R_20066840_20066876 98.34 99.04 100.00 98.51 100.00 100.00 97.53 97.42 97.89 93.75 100.00 97.69 98.78 99.01 99.35 98.58 96.95 97.50 100.00 98.64 97.98 100.00 97.06 98.35 97.37 98.56 97.89 98.61 96.20 98.53 96.83 96.15 98.50 98.77 94.57 98.92 96.91 99.03 98.33 98.37 100.00 98.03 97.17 99.35 93.88 100.00 97.01 98.25 97.56 NA 95.74 100.00 96.15 96.00 99.41 100.00 96.00 98.11 K jcn_only_AD sar1,I_chr3R_18185148_18185246 chr3R + chr3R_18182472_18183252;chr3R_18182521_18183252;chr3R_18182467_18183252 chr3R_18182490_18183252 chr3R_18183253_18183393;chr3R_18182460_18182466 0.26 0.56 0.57 0.22 0.00 0.00 0.26 0.20 0.69 0.00 0.00 0.82 0.80 0.43 1.42 0.00 1.32 0.37 0.81 0.00 0.00 1.33 0.00 0.00 0.00 0.71 1.04 1.35 1.15 0.00 0.61 0.00 0.00 1.07 1.01 2.02 0.00 1.06 0.55 0.00 0.00 0.19 0.80 0.00 0.56 0.51 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.76 0.00 1.76 1.52 K jcn_only_AD CG17721,RI_chr3R_7061265_7061322 chr3R + chr3R_7061229_7061322 chr3R_7061265_7061322 chr3R_7061323_7061422;chr3R_7061165_7061228 13.79 13.79 19.23 11.36 10.00 6.06 7.14 28.21 23.53 18.57 13.33 14.04 6.67 18.18 11.90 9.38 7.14 24.00 16.00 16.00 21.62 13.51 2.70 8.64 4.44 0.00 5.41 7.69 18.60 18.75 4.65 16.67 NA 9.52 NA 18.60 7.04 24.53 24.59 11.29 13.79 14.29 11.43 22.45 16.28 19.05 22.00 23.08 12.20 16.00 15.38 12.50 8.33 14.81 10.00 13.33 11.49 21.95 K intron_retention CG32582,I_chrX_15730402_15730457 chrX + chrX_15730431_15730557 chrX_15730430_15730431;chrX_15730557_15730558 chrX_15730315_15730430;chrX_15730558_15730707 41.67 45.45 61.54 73.68 NA NA 76.19 60.00 60.71 NA 42.86 65.00 54.55 41.67 42.86 52.00 46.67 38.46 52.63 50.00 NA NA 33.33 40.00 NA NA 33.33 NA 45.45 NA 53.33 27.27 NA 48.28 36.36 58.33 37.50 42.86 NA 28.57 41.67 39.29 64.29 13.64 35.71 36.84 27.27 NA 37.50 41.18 42.86 35.71 21.43 18.75 50.00 30.00 25.93 23.08 K jcn_only_AA mnb chrX - chrX_17762200_17763014;chrX_17762403_17763014 chrX_17762203_17763014 chrX_17763015_17763849;chrX_17762180_17762199 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA SRPK chr2R + chr2R_11269919_11270907 chr2R_11269919_11270707 chr2R_11269355_11269918 0.00 0.00 1.27 0.00 0.00 0.00 1.33 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 3.90 0.00 0.00 0.00 1.39 2.53 1.22 0.00 0.00 0.00 0.00 1.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 2.44 0.00 3.70 0.00 0.00 2.04 0.00 K cassette Zasp52,RI_chr2R_11667164_11667562,I_chr2R_11690993_11701987 chr2R - chr2R_11666052_11667562 chr2R_11666052_11666769;chr2R_11667164_11667562 chr2R_11666770_11667163 chr2R_11665857_11666051;chr2R_11667563_11667662 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.99 0.00 0.00 0.00 3.16 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG5514,RI_chr3R_23768206_23768306,Gp93 chr3R + chr3R_23768206_23768309 chr3R_23768206_23768306 chr3R_23768160_23768205;chr3R_23768310_23768406 90.91 NA NA NA NA NA NA NA NA NA NA 90.91 NA NA NA NA NA NA NA 66.67 NA NA NA NA NA 100.00 NA NA NA NA 100.00 90.00 NA 88.89 87.50 100.00 NA NA 85.71 88.89 NA NA NA NA 81.25 90.91 NA 100.00 90.91 100.00 NA NA NA 100.00 NA NA NA NA K intron_retention cryptocephal,noncoding_4181,I_chr2L_21311307_21311752,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21311033_21311192 chr2L_21311032_21311033;chr2L_21311192_21311193 chr2L_21310948_21311032;chr2L_21311193_21311214 35.71 30.85 35.00 40.00 35.71 31.82 34.69 24.12 28.44 45.00 27.16 35.07 38.78 35.79 37.80 30.11 27.63 33.57 33.64 31.10 35.00 63.64 44.83 34.17 38.71 38.33 67.90 81.60 69.04 48.25 31.29 54.67 58.54 30.13 40.66 38.16 48.19 27.17 40.98 57.14 71.83 31.44 32.38 43.96 49.32 46.20 31.45 62.50 33.85 43.43 30.66 25.64 32.61 31.11 29.75 33.33 41.11 65.18 K intron_retention CG32103,I_chr3L_12398261_12403200 chr3L - chr3L_12397391_12397462 chr3L_12397390_12397391;chr3L_12397462_12397463 chr3L_12396872_12397390;chr3L_12397463_12398036 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.54 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11177 chrX + chrX_13506235_13506293 chrX_13506234_13506235;chrX_13506293_13506294 chrX_13506141_13506234;chrX_13506294_13506746 0.00 0.00 0.00 0.00 0.00 1.00 0.55 0.00 0.25 0.00 0.00 0.56 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Trn chr3L + chr3L_6189812_6190482 chr3L_6189812_6190136;chr3L_6190213_6190482 chr3L_6190137_6190212 chr3L_6189716_6189811;chr3L_6190483_6190657 100.00 100.00 100.00 100.00 100.00 100.00 98.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG4877 chr3L + chr3L_16379671_16379731 chr3L_16379671_16379725 chr3L_16379625_16379670;chr3L_16379732_16380052 60.00 NA 69.57 NA NA NA 60.00 NA 80.00 NA NA 60.00 NA NA 45.00 87.50 NA 63.64 61.90 64.29 NA NA 55.56 50.00 NA NA NA 60.00 54.55 56.52 NA NA NA 81.82 NA NA 47.62 NA NA 60.00 NA 56.25 NA 46.34 NA NA NA 61.29 48.15 NA 60.00 45.45 NA NA NA NA NA NA K jcn_only_AD Fas1,E_chr3R_12458491_12460799,I_chr3R_12458491_12460807,I_chr3R_12460976_12461267 chr3R + chr3R_12458491_12461267;chr3R_12460817_12461267 chr3R_12460105_12461267 chr3R_12461268_12461367 0.00 NA 9.52 NA 0.00 NA NA NA 2.94 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K intron_retention CG2950,I_chr2L_4842348_4842805,I_chr2L_4844647_4845086,I_chr2L_4844952_4845086 chr2L - chr2L_4842348_4843539 chr2L_4842347_4842348;chr2L_4843539_4843540 chr2L_4842248_4842347;chr2L_4843540_4843658 18.27 22.22 17.74 11.22 11.36 11.11 19.35 24.68 13.68 16.67 14.52 23.58 34.21 31.71 16.67 24.00 12.50 24.44 21.15 8.80 11.76 46.67 18.52 21.43 37.04 27.91 22.22 43.18 24.07 16.39 6.78 14.29 24.59 17.14 23.40 16.22 18.27 16.95 19.57 22.22 22.03 13.33 16.67 11.11 20.41 20.27 18.99 24.32 15.96 14.86 24.73 20.93 7.27 12.50 15.49 12.20 13.48 15.52 K intron_retention noncoding_20813 chr4 + chr4_927674_927740 chr4_927673_927674;chr4_927740_927741 chr4_927671_927673;chr4_927741_927770 82.61 77.78 73.33 84.00 63.64 75.00 89.58 68.42 82.61 91.30 75.00 78.79 43.75 68.18 68.42 72.00 53.33 52.94 83.33 66.67 60.00 98.91 83.78 86.21 91.67 90.00 100.00 97.14 100.00 87.88 80.49 75.00 92.59 69.44 83.33 96.55 96.97 94.12 92.59 88.14 100.00 72.73 78.57 90.00 94.44 82.14 95.45 97.78 62.16 87.88 88.24 96.00 60.00 72.00 64.00 75.00 76.00 72.00 K alternative_donor Ilp6,RI_chrX_2226173_2226308,I_chrX_2226173_2226571 chrX - chrX_2226173_2226376;chrX_2226173_2226571;chrX_2226173_2226308 chrX_2226173_2227352 chrX_2226073_2226172;chrX_2227353_2227719 100.00 100.00 97.30 100.00 100.00 100.00 95.89 99.02 99.32 100.00 97.44 97.56 100.00 100.00 100.00 98.88 100.00 97.87 100.00 98.96 100.00 93.75 98.84 98.18 100.00 97.78 100.00 95.00 92.86 100.00 100.00 100.00 97.87 98.86 97.44 100.00 100.00 100.00 100.00 95.45 100.00 99.17 100.00 100.00 100.00 100.00 100.00 100.00 98.20 96.83 98.72 100.00 100.00 100.00 98.51 100.00 98.75 100.00 K jcn_only_AA CG6805 chr2R + chr2R_12894564_12894770 chr2R_12894564_12894637 chr2R_12894294_12894563;chr2R_12894771_12895109 100.00 NA NA NA NA 100.00 NA 100.00 97.96 NA NA 100.00 100.00 NA 100.00 NA NA NA NA 100.00 100.00 NA NA 100.00 NA NA 95.00 NA NA NA NA NA NA 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 NA 90.91 NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA 91.67 100.00 NA NA K jcn_only_AD lig,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3955872_3957375;chr2R_3955586_3957375;chr2R_3955788_3957375 chr2R_3955517_3957375 chr2R_3957376_3957784;chr2R_3955509_3955516 94.74 94.87 95.06 96.43 98.72 100.00 94.29 96.84 98.02 90.48 98.77 96.12 98.63 94.74 96.30 95.59 92.50 98.65 93.15 93.62 93.75 89.19 NA NA NA 97.37 NA NA 85.19 91.67 89.47 95.83 93.33 96.03 88.00 NA 80.00 NA NA 86.57 80.00 94.94 98.55 81.82 96.88 NA NA 91.43 94.69 NA NA NA 92.11 NA 97.32 NA NA 92.31 N intron_retention Cp1,Aats-phe chr2R + chr2R_9853191_9854259 chr2R_9853190_9853191;chr2R_9854259_9854260 chr2R_9853110_9853190;chr2R_9854260_9854474 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 77.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD osa,I_chr3R_13542657_13542834,I_chr3R_13542657_13543500,I_chr3R_13542657_13543662,I_chr3R_13542657_13543668,I_chr3R_13543730_13543786 chr3R - chr3R_13542657_13543968;chr3R_13542657_13543500;chr3R_13542657_13542834;chr3R_13542657_13543668;chr3R_13542657_13543677 chr3R_13542657_13543662 chr3R_13542557_13542656;chr3R_13543969_13544017 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 1.47 0.00 0.00 0.83 0.00 2.25 0.94 0.00 0.00 0.00 0.50 0.00 0.00 0.56 0.00 0.00 1.37 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.55 2.82 0.00 0.00 1.25 0.00 0.00 0.00 2.40 0.00 0.00 2.56 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 K alternative_acceptor Dyrk3,I_chr4_1231226_1233305,I_chr4_1233845_1234170 chr4 - chr4_1230568_1230624 chr4_1230573_1230624 chr4_1230625_1231068;chr4_1230231_1230567 92.45 85.71 95.00 97.37 92.31 100.00 93.75 92.59 86.49 NA 94.12 100.00 88.24 90.91 93.33 100.00 90.91 85.71 95.00 93.55 88.89 100.00 95.45 92.31 100.00 81.25 100.00 100.00 92.31 100.00 90.00 100.00 90.00 91.43 100.00 90.91 90.91 100.00 84.62 96.00 90.00 90.32 100.00 93.33 92.31 85.71 93.33 100.00 91.43 100.00 85.71 92.31 88.89 90.00 85.19 100.00 93.75 84.62 K jcn_only_AA Trap1 chr2R - chr2R_2521435_2521515;chr2R_2521438_2521515 chr2R_2521454_2521515 chr2R_2521516_2521564;chr2R_2521152_2521434 100.00 100.00 100.00 100.00 98.89 97.53 100.00 99.40 98.85 100.00 100.00 100.00 100.00 100.00 100.00 98.90 97.26 97.89 100.00 99.41 96.67 100.00 100.00 100.00 98.08 100.00 100.00 100.00 98.46 100.00 98.68 100.00 99.13 98.58 100.00 100.00 100.00 98.94 99.19 100.00 100.00 100.00 100.00 98.88 99.12 100.00 99.24 100.00 99.52 100.00 99.30 100.00 99.21 100.00 98.95 99.24 100.00 100.00 K intron_retention Got2 chr2L - chr2L_1986106_1987584 chr2L_1986105_1986106;chr2L_1987584_1987585 chr2L_1985946_1986105;chr2L_1987585_1987761 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 1.20 0.75 0.00 0.00 0.00 0.00 0.00 2.05 0.00 0.00 0.00 0.47 0.00 0.00 0.54 0.69 0.87 0.80 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.86 1.16 0.42 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.50 K jcn_only_AA RpL36,RI_chrX_522912_523358,I_chrX_522932_523360,I_chrX_522949_523360 chrX - chrX_522912_523360;chrX_522932_523360 chrX_522949_523360 chrX_523361_523436;chrX_522849_522911 2.28 1.98 1.77 1.30 2.38 2.27 17.10 3.21 2.05 2.13 5.56 1.28 5.36 2.70 2.17 2.08 4.38 5.71 5.65 2.36 4.14 4.17 2.11 2.19 5.16 32.24 1.90 4.32 1.90 5.86 3.60 3.64 2.06 2.62 3.19 2.87 1.96 0.90 2.00 2.15 7.55 2.94 5.37 0.58 1.94 3.23 1.57 1.59 3.30 1.06 1.32 2.41 0.80 1.60 2.51 1.19 2.28 1.60 K intron_retention opa1-like,I_chr2R_10119470_10120234,I_chr2R_10121848_10121900,I_chr2R_10122128_10122197,I_chr2R_10122334_10122393 chr2R - chr2R_10119470_10120220 chr2R_10119469_10119470;chr2R_10120220_10120221 chr2R_10119370_10119469;chr2R_10120221_10120227 8.51 6.98 6.90 6.49 7.69 11.43 6.06 8.47 9.09 26.32 7.50 11.11 20.83 5.88 8.33 8.33 11.54 5.88 13.16 10.45 0.00 10.42 13.46 10.64 2.94 0.00 4.84 12.50 8.89 16.67 4.88 19.23 12.90 14.00 16.00 2.44 6.67 8.51 6.78 11.69 5.00 7.46 18.18 8.89 0.00 7.14 8.89 20.00 14.55 8.00 19.15 5.71 16.67 5.71 5.41 6.12 10.42 17.65 K intron_retention CG10011 chr3R - chr3R_24436242_24436323 chr3R_24436241_24436242;chr3R_24436323_24436324 chr3R_24435931_24436241;chr3R_24436324_24441888 0.00 0.00 NA 3.57 5.56 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 4.35 0.00 0.00 5.56 8.33 0.00 0.00 0.00 0.00 0.00 NA 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 NA 4.44 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 K jcn_only_AD skap,I_chr3R_4766829_4767129,CRE_chr3R_4766916_4767129 chr3R + chr3R_4766912_4767129 chr3R_4767039_4767129 chr3R_4767130_4767229;chr3R_4766816_4766911 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.26 0.00 0.00 0.00 0.21 0.00 0.49 0.00 0.29 0.00 0.88 0.00 0.32 0.00 0.00 0.00 0.37 0.40 0.70 0.62 2.54 0.36 0.00 0.00 0.00 0.42 0.56 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.47 0.00 0.42 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.55 0.00 0.47 0.70 0.36 0.34 0.00 N jcn_only_AA CG32138 chr3L + chr3L_14058259_14059498;chr3L_14058259_14058715 chr3L_14058259_14058688 chr3L_14058172_14058258;chr3L_14059499_14060368 5.20 3.42 1.52 6.44 3.24 4.42 3.46 4.03 5.12 5.61 1.57 5.07 9.40 3.50 2.11 4.91 4.00 2.92 5.53 2.81 4.94 12.92 7.69 5.65 7.87 5.65 7.75 11.11 11.11 8.27 4.64 5.13 9.24 2.95 7.96 19.65 5.66 7.77 7.93 6.55 5.61 3.45 4.90 5.05 6.67 6.13 8.02 5.60 2.62 13.07 5.20 5.88 1.18 3.60 4.03 9.88 3.76 3.66 K intron_retention mfas,I_chr3R_7811954_7812017,RI_chr3R_7818607_7818970 chr3R - chr3R_7815051_7818463 chr3R_7815050_7815051;chr3R_7818463_7818464 chr3R_7814932_7815050;chr3R_7818464_7818574 88.97 88.97 87.14 81.18 93.44 89.86 94.44 89.01 89.23 89.55 89.33 95.12 94.03 92.31 95.56 90.00 93.55 96.55 89.39 84.21 86.25 93.42 82.99 75.56 91.25 97.44 85.09 87.76 87.50 90.11 93.65 85.00 76.25 89.52 83.95 93.67 87.30 90.35 86.08 85.52 81.63 89.45 93.85 87.96 82.47 78.85 84.13 75.00 83.62 89.52 81.34 85.45 73.68 79.73 95.33 86.14 89.29 67.65 K intron_retention I_chr3R_25875159_25875219,CG7946,CG15526 chr3R + chr3R_25880069_25880131 chr3R_25880068_25880069;chr3R_25880131_25880132 chr3R_25879266_25880068;chr3R_25880132_25880201 0.00 0.00 0.00 6.67 0.00 3.03 0.00 4.17 1.37 0.00 0.00 4.62 0.00 0.00 0.00 2.82 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 4.26 4.92 0.00 17.39 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 5.41 2.00 4.92 3.61 3.33 0.00 0.00 2.90 0.00 3.45 2.60 0.00 0.00 0.00 0.00 2.04 0.00 0.00 1.59 0.00 K intron_retention hppy,I_chr2R_15066378_15066915,I_chr2R_15105700_15106080,I_chr2R_15106144_15108248 chr2R + chr2R_15066378_15067003 chr2R_15066377_15066378;chr2R_15067003_15067004 chr2R_15066360_15066377;chr2R_15067004_15067015 41.18 35.29 46.15 60.71 NA 41.18 61.54 69.57 56.25 63.64 NA 48.15 60.00 53.85 37.50 42.86 41.18 58.33 36.36 32.43 66.67 28.26 39.39 47.06 35.29 33.33 52.38 33.33 23.08 47.83 47.06 NA 46.15 59.26 42.11 25.00 50.00 39.13 NA 30.23 NA 47.83 53.85 16.36 NA 29.41 25.00 19.35 43.18 58.33 40.00 29.41 23.08 NA 36.84 40.00 NA 30.77 K alternative_donor Elf,I_chr2L_12437061_12437812 chr2L + chr2L_12436928_12437812 chr2L_12436979_12437812 chr2L_12437813_12437912;chr2L_12436859_12436927 100.00 NA NA NA NA NA NA NA 100.00 NA NA 85.71 NA NA NA 100.00 NA NA NA NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA K alternative_donor CG1746,I_chr3R_27044771_27044867,I_chr3R_27044771_27044990,I_chr3R_27044771_27045027,RI_chr3R_27044771_27045110,I_chr3R_27044771_27045132,RI_chr3R_27044771_27045188,I_chr3R_27044771_27045193,RI_chr3R_27044771_27045268 chr3R - chr3R_27044771_27044867;chr3R_27044771_27045188;chr3R_27044771_27045132;chr3R_27044771_27045027;chr3R_27044771_27045110;chr3R_27044771_27044831;chr3R_27044771_27044990;chr3R_27044771_27044895 chr3R_27044771_27045257 chr3R_27044671_27044770;chr3R_27045258_27045273 98.65 99.10 98.54 99.34 100.00 99.25 98.58 99.67 98.84 95.71 99.18 98.70 98.97 99.03 99.32 98.56 99.62 99.16 99.06 98.61 99.35 98.88 88.89 83.87 92.31 98.87 80.95 91.07 93.66 95.96 99.09 99.10 98.42 99.21 94.23 96.43 90.48 87.50 91.43 97.55 96.88 99.35 99.27 96.15 98.82 98.70 84.62 98.90 99.08 84.00 85.71 91.67 98.65 87.50 99.48 80.56 92.45 99.17 K jcn_only_AA pr,I_chr2L_20074851_20075383 chr2L - chr2L_20074851_20075383 chr2L_20075320_20075383 chr2L_20075384_20075483 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA NA NA NA NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA NA 100.00 NA 100.00 100.00 NA NA NA 100.00 NA 100.00 NA NA 100.00 K intron_retention Pk92B chr3R + chr3R_15705766_15705837 chr3R_15705765_15705766;chr3R_15705837_15705838 chr3R_15705421_15705765;chr3R_15705838_15706032 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 5.71 1.52 0.00 0.00 0.00 9.76 6.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 K alternative_donor noncoding_18164,F_chr3R_17192061_17200781,RI_chr3R_17193489_17193631 chr3R + chr3R_17193489_17193631;chr3R_17193407_17193631 chr3R_17193416_17193631 chr3R_17193632_17193731;chr3R_17193389_17193406 70.00 66.67 58.82 59.26 71.43 64.29 62.50 61.90 65.00 NA NA 69.23 64.29 60.00 66.67 73.91 71.43 70.00 71.43 66.67 63.64 NA 80.00 70.00 NA 76.92 62.50 85.71 71.43 NA 68.42 75.00 83.33 61.90 70.00 50.00 87.50 42.86 81.82 52.00 76.92 73.08 75.00 69.23 66.67 66.67 72.73 75.00 80.77 83.33 71.43 66.67 85.71 70.00 73.33 81.25 66.67 80.77 K intron_retention CG1109,CG1347 chr3R + chr3R_1489375_1489439 chr3R_1489374_1489375;chr3R_1489439_1489440 chr3R_1489141_1489374;chr3R_1489440_1489651 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 NA 0.00 0.00 0.00 6.45 0.00 2.70 3.12 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Aldh-III,I_chr2R_3356541_3356614,RI_chr2R_3357578_3357636,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3355332_3356864 chr2R_3355332_3355926;chr2R_3356043_3356864 chr2R_3355927_3356042 chr2R_3355296_3355331;chr2R_3356865_3357018 97.92 97.40 96.30 96.51 100.00 98.41 100.00 97.59 98.65 79.17 100.00 99.21 94.87 98.41 98.75 98.82 100.00 100.00 96.55 99.35 98.36 95.83 97.62 96.67 100.00 97.62 96.92 95.24 96.00 97.50 95.40 98.00 97.67 100.00 97.92 97.62 96.55 97.10 97.98 95.06 97.06 98.57 98.08 100.00 98.33 95.56 98.06 94.00 99.12 97.50 97.87 96.00 98.18 97.10 100.00 98.88 98.94 97.92 K intron_retention CG2034 chr3L + chr3L_2258518_2258579 chr3L_2258517_2258518;chr3L_2258579_2258580 chr3L_2257872_2258517;chr3L_2258580_2258934 0.00 0.00 0.00 2.75 1.32 2.44 0.00 0.00 1.26 0.00 0.00 1.38 0.00 0.00 0.00 0.00 0.00 0.00 1.41 3.06 0.00 4.82 0.00 0.00 0.00 0.00 0.85 5.41 16.46 0.00 0.00 1.15 0.00 0.00 0.00 1.94 0.00 0.90 0.53 0.76 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 1.43 0.00 0.87 0.00 0.68 0.00 0.00 0.00 0.48 0.00 K alternative_donor l(2)08717 chr2R - chr2R_14686769_14689522 chr2R_14686769_14687299 chr2R_14686578_14686768;chr2R_14689523_14689898 3.23 3.45 2.56 0.00 0.00 3.85 2.56 1.27 3.51 3.45 2.70 5.26 4.55 3.12 2.78 2.94 4.35 3.33 3.23 1.19 3.33 5.88 2.38 3.23 3.57 2.56 5.26 9.09 6.38 3.45 3.45 4.76 3.03 1.56 3.45 5.26 2.13 4.17 2.38 1.69 2.70 1.47 3.45 2.56 3.23 2.50 2.27 3.64 3.77 3.23 5.00 0.00 2.78 0.00 2.50 3.57 0.00 2.27 K jcn_only_AD crol,I_chr2L_11799403_11802904 chr2L - chr2L_11800323_11802904;chr2L_11800323_11802370;chr2L_11800323_11802286 chr2L_11800323_11802343 chr2L_11800155_11800322;chr2L_11802905_11803004 0.00 0.37 0.00 0.25 0.00 0.00 0.00 0.00 0.30 0.54 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.86 0.00 0.00 0.00 0.19 0.00 0.31 0.41 0.00 0.30 0.39 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.17 0.00 0.00 0.00 1.23 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14995,I_chr3L_4095875_4097205,I_chr3L_4096047_4096903 chr3L - chr3L_4096979_4097205 chr3L_4096978_4096979;chr3L_4097205_4097206 chr3L_4096971_4096978;chr3L_4097206_4097305 12.50 13.33 NA NA NA NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA 12.50 NA 15.79 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.09 NA 27.27 NA 13.33 7.14 NA NA NA NA 12.50 0.00 NA NA NA NA NA NA NA K intron_retention cav chr3R + chr3R_20047648_20048064 chr3R_20047647_20047648;chr3R_20048064_20048065 chr3R_20047531_20047647;chr3R_20048065_20048196 100.00 NA 100.00 100.00 100.00 NA 94.74 100.00 96.43 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA NA 100.00 NA NA NA NA 100.00 100.00 100.00 100.00 NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA 100.00 K jcn_only_AD Myb,RI_chrX_15752571_15753225 chrX - chrX_15751579_15751673;chrX_15751579_15751682;chrX_15751579_15751749 chrX_15751579_15751709 chrX_15749823_15751578;chrX_15751750_15751876 0.96 1.92 0.00 2.99 3.77 2.17 2.99 0.99 0.00 0.00 2.56 0.00 0.00 1.37 1.52 0.66 2.63 2.22 0.00 3.28 6.25 0.00 0.00 0.00 0.00 2.27 0.00 4.76 3.03 1.79 0.00 2.04 1.41 0.93 2.27 0.00 1.43 2.78 0.00 0.00 2.78 2.17 0.00 0.00 2.08 0.00 0.00 0.00 1.44 NA 0.00 0.00 2.78 4.55 0.00 0.00 0.00 0.87 K alternative_donor CD98hc,I_chr3R_3802791_3802855 chr3R - chr3R_3802791_3803283 chr3R_3802791_3802855 chr3R_3802691_3802790;chr3R_3803284_3803397 0.78 0.38 0.97 0.95 0.89 0.54 1.56 0.81 0.91 0.56 0.76 1.17 0.75 1.32 0.48 1.70 1.06 2.33 0.67 0.41 0.00 1.15 0.23 0.28 0.46 0.56 1.31 3.78 1.71 0.36 1.43 1.07 1.17 1.12 0.48 0.40 0.00 0.72 0.24 1.06 1.03 1.07 0.70 0.85 0.73 1.16 0.33 0.94 1.19 0.46 0.24 1.38 0.78 0.40 0.50 0.76 0.40 1.30 K jcn_only_AA CG33090,CEI_chr2L_14342636_14342777 chr2L + chr2L_14341577_14342783 chr2L_14341577_14342777 chr2L_14341307_14341576;chr2L_14342784_14342877 56.30 44.00 51.06 64.10 54.29 56.76 46.94 46.00 55.13 51.22 59.38 47.95 35.48 45.83 72.34 61.22 60.00 58.97 52.63 53.57 58.82 46.03 64.94 44.62 64.71 67.50 75.51 60.98 66.67 56.67 55.00 60.47 56.30 50.00 52.38 59.18 56.00 63.83 58.44 53.33 54.29 60.76 43.33 48.21 48.94 55.00 58.54 59.09 57.83 48.48 60.29 48.65 57.14 70.97 50.00 56.25 72.41 70.21 K alternative_donor aralar1,CG15535,I_chr3R_26249362_26249414 chr3R - chr3R_26249362_26249431 chr3R_26249362_26249414 chr3R_26249262_26249361;chr3R_26249432_26249514 0.00 0.00 5.56 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA NA NA NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.45 NA 0.00 0.00 0.00 0.00 K alternative_acceptor CG31169,I_chr3R_18209085_18209133 chr3R + chr3R_18209081_18209172 chr3R_18209081_18209133 chr3R_18209073_18209080;chr3R_18209173_18209201 48.96 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 56.25 NA NA NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention l(1)G0156 chrX - chrX_19414861_19415360 chrX_19414860_19414861;chrX_19415360_19415361 chrX_19414693_19414860;chrX_19415361_19415376 17.65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 17.65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Shawn_Tyler,CG14207,RI_chrX_19502515_19504413,CRE_chrX_19503018_19503085,CE_chrX_19503187_19504413 chrX + chrX_19502515_19504413 chrX_19502514_19502515;chrX_19504413_19504414 chrX_19502499_19502514;chrX_19504414_19504495 100.00 100.00 100.00 88.89 NA NA NA 100.00 86.67 100.00 100.00 100.00 NA 100.00 NA 100.00 NA NA 100.00 100.00 NA 100.00 100.00 90.91 NA NA 91.67 NA 100.00 NA 100.00 NA 100.00 100.00 100.00 83.33 100.00 90.91 100.00 100.00 100.00 93.33 NA 100.00 NA 83.33 100.00 90.00 92.31 100.00 82.35 100.00 NA 100.00 100.00 91.67 81.82 91.67 N alternative_acceptor CG13900,I_chr3L_830745_830907 chr3L - chr3L_830715_830907;chr3L_830814_830907;chr3L_830729_830907 chr3L_830745_830907 chr3L_830908_831007;chr3L_830702_830714 1.45 3.03 3.92 5.88 0.00 2.33 4.76 1.14 0.00 0.00 2.70 2.56 0.00 2.22 1.75 1.45 2.44 0.00 0.00 2.94 2.27 3.85 1.89 4.08 0.00 0.00 1.54 5.71 0.00 0.00 1.71 2.86 1.96 3.45 3.70 0.00 0.00 0.00 0.00 1.72 0.00 3.23 0.00 0.00 0.00 3.70 0.00 2.70 1.39 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 4.88 N alternative_acceptor AnnIX,I_chr3R_16895383_16895999 chr3R + chr3R_16895383_16896445 chr3R_16895383_16895999 chr3R_16895283_16895382;chr3R_16896446_16896495 100.00 76.32 100.00 64.10 100.00 100.00 79.63 85.39 85.57 100.00 58.62 92.86 64.00 100.00 100.00 100.00 70.73 100.00 100.00 67.82 57.69 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 80.70 100.00 100.00 85.29 100.00 100.00 76.47 100.00 100.00 100.00 100.00 75.00 100.00 100.00 100.00 86.57 73.91 100.00 85.06 100.00 87.23 72.73 100.00 75.68 78.05 73.91 72.55 100.00 K intron_retention scny,I_chr3L_5763034_5768288 chr3L + chr3L_5768114_5768288 chr3L_5768113_5768114;chr3L_5768288_5768289 chr3L_5767514_5768113;chr3L_5768289_5768388 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA 90.00 38.46 60.00 NA NA NA 80.00 NA NA NA NA NA NA NA NA 50.00 NA NA 60.00 NA 28.57 NA NA NA 45.45 NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention skpA chrX + chrX_550818_551131 chrX_550817_550818;chrX_551131_551132 chrX_550493_550817;chrX_551132_551937 33.56 NA NA NA NA NA 30.77 61.54 23.33 NA NA 41.67 NA NA NA 41.67 NA NA NA 36.84 NA NA NA NA NA NA NA NA NA NA 25.00 NA NA 36.36 NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA 30.00 NA NA NA NA NA NA NA NA NA K intron_retention CG1407,RI_chr2R_5918952_5919093 chr2R - chr2R_5919841_5919898 chr2R_5919840_5919841;chr2R_5919898_5919899 chr2R_5919719_5919840;chr2R_5919899_5920393 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 1.22 0.46 0.00 0.00 0.00 0.00 0.00 0.63 0.00 1.52 0.87 0.72 0.00 1.53 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.13 K intron_retention CG8709,I_chr2R_4027128_4027182,RI_chr2R_4029534_4029599,I_chr2R_4030580_4030636,I_chr2R_4030580_4030746,I_chr2R_4035901_4043493 chr2R - chr2R_4030580_4033259 chr2R_4030579_4030580;chr2R_4033259_4033260 chr2R_4030480_4030579;chr2R_4033260_4033265 0.00 0.00 2.50 3.61 0.00 0.00 3.70 4.00 5.77 0.00 0.00 4.65 11.54 10.53 3.12 3.57 2.50 0.00 0.00 2.74 0.00 10.26 4.35 3.51 0.00 0.00 1.75 0.00 8.33 2.44 0.00 9.09 5.88 4.00 0.00 0.00 0.00 0.00 2.13 4.26 4.76 6.45 0.00 0.00 0.00 0.00 0.00 6.25 7.25 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 K alternative_donor zip,I_chr2R_20878796_20879147 chr2R - chr2R_20898140_20898992;chr2R_20898140_20898834 chr2R_20898140_20898898 chr2R_20897903_20898139;chr2R_20898993_20898996 66.67 63.33 74.76 74.42 68.57 70.73 66.67 75.25 71.98 66.67 75.00 73.68 71.96 75.76 69.67 70.43 72.38 78.35 76.61 66.22 77.38 45.76 38.64 35.48 40.74 71.95 23.08 60.98 56.12 55.88 77.05 67.11 66.79 72.06 58.82 44.26 55.77 40.00 52.78 60.34 61.04 73.20 76.00 59.26 69.77 66.67 46.15 65.99 73.42 50.00 35.00 48.39 52.00 23.08 73.53 52.17 62.96 70.99 K jcn_only_AD Uba1,I_chr2R_5579209_5579407 chr2R - chr2R_5579209_5579786 chr2R_5579209_5579407 chr2R_5579109_5579208;chr2R_5579787_5580879 0.39 0.51 0.00 0.00 0.55 0.28 0.38 0.00 0.24 0.32 0.63 0.00 0.00 0.00 0.47 0.46 0.58 0.57 0.30 0.13 0.30 1.02 0.85 0.37 0.91 0.80 0.69 1.89 0.58 0.41 2.19 0.00 0.24 0.18 0.59 0.50 0.35 0.00 0.43 1.05 0.27 0.14 0.34 0.75 0.29 1.27 0.33 0.00 0.53 1.66 0.39 0.97 0.98 0.00 0.22 0.00 0.44 0.60 K intron_retention shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9759231_9759483 chr2R_9759230_9759231;chr2R_9759483_9759484 chr2R_9759171_9759230;chr2R_9759484_9759658 0.00 0.00 1.28 0.00 0.00 0.00 3.57 0.98 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.72 0.00 0.70 0.00 0.60 0.00 0.00 0.47 0.00 0.00 2.92 0.00 1.44 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.63 1.53 0.00 0.54 0.00 0.00 0.00 0.00 0.00 2.22 0.90 1.05 0.31 0.00 0.00 0.00 1.22 0.00 0.00 0.00 K alternative_donor CG9323 chr2L - chr2L_20754938_20754992 chr2L_20754938_20754988 chr2L_20754809_20754937;chr2L_20754993_20755265 7.41 9.09 5.00 15.15 NA 4.55 17.86 10.34 7.50 NA 0.00 7.14 7.69 5.26 6.67 3.03 0.00 0.00 13.79 8.20 0.00 10.53 9.09 3.23 14.29 30.00 12.00 11.11 21.05 10.53 8.70 4.76 3.45 6.52 0.00 5.88 3.57 0.00 8.33 2.27 6.52 8.00 4.76 7.41 2.63 10.00 0.00 9.68 10.81 11.63 6.90 8.00 13.33 8.70 3.45 5.26 15.15 7.32 K intron_retention wech,I_chr2R_3373673_3377000,I_chr2R_3373673_3377045,I_chr2R_3373673_3377324,I_chr2R_3376705_3376837 chr2R - chr2R_3373673_3375960 chr2R_3373672_3373673;chr2R_3375960_3375961 chr2R_3373573_3373672;chr2R_3375961_3376252 63.64 54.55 63.64 53.85 NA NA 30.77 42.86 50.00 NA 69.23 58.82 60.00 57.14 73.33 52.63 33.33 NA 55.56 66.67 50.00 NA 63.64 84.62 NA NA 82.35 NA NA NA 72.73 77.78 50.00 61.11 69.23 NA NA 75.00 53.85 66.67 NA 51.72 77.78 41.67 NA 91.67 100.00 66.67 57.89 70.00 69.23 50.00 NA NA 69.23 90.00 92.31 NA K multi_cassette fra,I_chr2R_8447607_8449360 chr2R + chr2R_8447607_8449360 chr2R_8447607_8447663;chr2R_8448995_8449052;chr2R_8449301_8449360 chr2R_8447664_8448994;chr2R_8449053_8449300 chr2R_8447507_8447606;chr2R_8449361_8449460 100.00 100.00 94.12 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 K intron_retention CG13760 chrX - chrX_2478429_2478495 chrX_2478428_2478429;chrX_2478495_2478496 chrX_2477778_2478428;chrX_2478496_2478581 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 7.41 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor TBPH,I_chr2R_19748981_19749882,I_chr2R_19748981_19749921,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19748981_19749899;chr2R_19748981_19750012;chr2R_19748981_19749783 chr2R_19748981_19749882 chr2R_19748884_19748980;chr2R_19750013_19750013 3.26 3.03 2.86 1.54 3.45 5.56 7.58 6.02 3.26 5.56 3.12 3.57 2.86 2.63 2.27 5.33 2.56 2.38 2.00 1.04 2.44 8.82 6.52 4.88 6.06 4.65 2.56 3.85 5.88 3.03 4.17 3.33 3.12 3.03 14.29 8.11 3.70 3.57 2.33 5.63 10.20 6.02 3.03 2.56 4.17 4.88 8.00 2.00 1.25 2.86 2.27 3.23 4.00 3.57 1.82 0.00 2.33 1.82 K jcn_only_AD CG6006 chr3R + chr3R_11984096_11984579;chr3R_11983962_11984579;chr3R_11984036_11984579;chr3R_11984018_11984579 chr3R_11984029_11984579 chr3R_11984580_11984637;chr3R_11983945_11983961 22.54 NA NA NA NA NA 50.00 NA 19.23 NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA 20.83 NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA 22.50 NA NA NA NA NA NA 22.58 NA 26.09 NA NA NA NA NA NA NA K jcn_only_AD Traf-like,I_chrX_16309163_16309641,I_chrX_16309212_16309689,I_chrX_16309561_16309641,I_chrX_16309561_16309689,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16309561_16309689;chrX_16309163_16309689 chrX_16309619_16309689 chrX_16309690_16309741;chrX_16309112_16309162 95.58 96.67 98.28 94.44 98.15 98.33 95.24 94.90 95.59 96.77 92.31 97.70 85.19 97.44 96.77 100.00 95.65 96.72 96.88 90.32 95.08 94.87 88.46 97.01 87.50 94.00 98.08 NA 100.00 97.22 85.71 92.59 84.62 98.73 85.37 80.00 94.53 98.28 97.92 91.53 87.50 91.00 95.65 100.00 NA 92.86 88.89 91.67 96.15 98.21 92.31 93.44 96.77 95.56 96.77 94.55 97.37 NA K intron_retention Taf6 chr3L + chr3L_19594248_19594309 chr3L_19594247_19594248;chr3L_19594309_19594310 chr3L_19594013_19594247;chr3L_19594310_19594484 86.36 75.00 88.89 92.11 94.44 86.36 93.33 87.50 82.93 94.44 94.74 85.71 94.12 93.75 89.29 85.71 76.47 83.33 81.82 85.48 86.96 66.67 87.10 84.44 89.19 95.24 80.00 84.38 88.89 88.24 92.86 83.72 87.50 85.71 80.56 100.00 86.79 81.58 84.21 88.52 92.00 82.35 80.00 86.67 67.86 82.98 76.36 96.43 89.13 84.62 80.00 95.00 78.95 85.96 95.83 80.43 80.36 87.10 K jcn_only_AD CG5976 chr3L + chr3L_20467744_20468664 chr3L_20468598_20468664 chr3L_20468665_20469897;chr3L_20467566_20467743 100.00 NA 100.00 100.00 100.00 NA 100.00 92.50 95.74 NA 100.00 100.00 NA NA NA 95.45 95.65 NA 95.83 100.00 96.67 100.00 NA 96.30 NA 100.00 100.00 100.00 NA NA 100.00 NA NA 97.22 NA 100.00 NA NA 100.00 100.00 NA 100.00 NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA 95.83 NA 100.00 92.31 K intron_retention CG5973,I_chr2L_7441485_7443583,I_chr2L_7443388_7443583 chr2L + chr2L_7440852_7443583 chr2L_7440851_7440852;chr2L_7443583_7443584 chr2L_7440710_7440851;chr2L_7443584_7443683 39.28 NA NA NA NA NA NA 35.71 42.86 NA NA NA NA NA NA NA NA NA NA 47.06 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 35.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Dek chr2R + chr2R_12743821_12744310 chr2R_12743820_12743821;chr2R_12744310_12744311 chr2R_12743729_12743820;chr2R_12744311_12744557 52.63 66.67 53.85 33.33 NA 60.00 37.50 64.29 41.38 NA 25.00 65.00 45.45 53.33 57.14 50.00 45.45 43.75 60.00 42.86 53.85 NA 66.67 57.89 NA 70.00 53.85 NA 30.77 35.71 52.63 41.67 34.78 57.89 NA 42.86 50.00 53.85 47.06 45.83 NA 53.85 60.00 45.45 30.77 37.50 53.33 18.18 63.16 62.50 40.00 60.00 87.50 66.67 43.75 62.50 NA 21.74 K intron_retention Cyp12a5,Cyp12a4 chr3R + chr3R_14959103_14959154 chr3R_14959102_14959103;chr3R_14959154_14959155 chr3R_14958612_14959102;chr3R_14959155_14959602 12.97 15.15 6.67 37.14 10.00 0.00 12.90 7.87 21.33 NA 6.90 19.51 18.42 22.22 28.21 17.54 12.90 14.29 15.91 14.81 8.33 NA NA NA NA 0.00 35.71 NA NA NA 20.00 NA NA 13.73 NA NA NA NA NA 12.12 NA 14.29 7.41 12.12 NA 4.76 4.55 9.52 13.46 NA 13.04 10.00 NA NA 22.22 6.67 NA 7.41 K intron_retention CG31159 chr3R + chr3R_18440899_18440950 chr3R_18440898_18440899;chr3R_18440950_18440951 chr3R_18440681_18440898;chr3R_18440951_18441462 0.00 NA NA NA NA NA NA NA 4.35 NA NA NA NA NA NA NA NA NA NA 8.33 NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 K alternative_donor RpL15 chr3LHet + chr3LHet_2398018_2398127;chr3LHet_2397859_2398127;chr3LHet_2397992_2398127;chr3LHet_2398060_2398127;chr3LHet_2397841_2398127;chr3LHet_2398002_2398127;chr3LHet_2397820_2398127;chr3LHet_2398053_2398127 chr3LHet_2397925_2398127 chr3LHet_2398128_2398454;chr3LHet_2397802_2397819 0.00 0.00 0.00 0.35 0.00 0.00 1.39 0.36 0.00 0.00 0.00 1.79 0.00 3.70 0.00 1.72 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 1.56 3.57 0.00 0.84 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.43 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG32626 chrX - chrX_13728240_13728847;chrX_13727056_13728847 chrX_13727065_13728847 chrX_13728848_13729182 54.55 58.21 56.03 54.95 66.67 61.63 57.38 58.42 59.41 48.51 54.81 48.24 58.54 51.49 64.44 56.25 55.65 48.57 58.49 59.32 69.30 47.98 50.00 46.73 54.55 61.64 48.87 50.24 47.86 39.32 66.34 45.61 45.60 56.42 57.04 51.54 51.14 52.71 50.57 56.47 48.10 58.41 57.14 55.10 47.37 51.89 49.46 42.42 56.28 45.24 52.82 60.53 52.63 56.49 62.28 51.81 46.91 54.24 K intron_retention I_chr3L_17833072_17833135,CG5567,MED19 chr3L - chr3L_17837995_17838853 chr3L_17837994_17837995;chr3L_17838853_17838854 chr3L_17837880_17837994;chr3L_17838854_17839594 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.00 2.13 2.27 0.00 0.00 0.00 2.70 0.00 3.92 0.00 0.00 0.00 1.89 1.64 0.96 0.00 2.17 2.78 3.39 0.00 0.00 0.00 0.00 0.00 3.03 0.00 1.61 0.00 1.49 1.92 0.00 1.59 0.85 4.55 1.37 0.00 0.00 2.30 0.00 2.11 1.19 0.00 3.23 0.00 0.00 0.00 1.06 0.00 0.00 K intron_retention PhKgamma,I_chrX_11590179_11590249,I_chrX_11590183_11590435,I_chrX_11596563_11597322 chrX + chrX_11590345_11590435 chrX_11590344_11590345;chrX_11590435_11590436 chrX_11590250_11590344;chrX_11590436_11590535 37.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 37.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N cassette Dscam,F_chr2R_3219886_3228832,F_chr2R_3226043_3235353,F_chr2R_3227948_3235353,F_chr2R_3228738_3235353,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3219886_3235353 chr2R_3219886_3231783;chr2R_3232075_3235353 chr2R_3231784_3232074 chr2R_3219786_3219885;chr2R_3235354_3235453 100.00 56.25 58.82 40.00 100.00 100.00 61.90 53.57 100.00 100.00 100.00 100.00 47.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 11.76 100.00 100.00 100.00 100.00 100.00 100.00 47.06 100.00 100.00 NA 33.33 100.00 100.00 100.00 100.00 100.00 100.00 55.56 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 72.41 100.00 55.56 100.00 100.00 NA 60.00 46.15 NA 100.00 K jcn_only_AA CG10080 chr2R + chr2R_17518321_17518491 chr2R_17518321_17518377 chr2R_17518123_17518320;chr2R_17518492_17518801 100.00 100.00 100.00 100.00 100.00 99.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.68 100.00 99.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N jcn_only_AD CG2052,RI_chr4_407611_409383 chr4 - chr4_407611_411050 chr4_407611_407679 chr4_407533_407610;chr4_411051_411100 96.15 NA 100.00 NA NA NA NA 89.66 100.00 NA NA 85.00 NA NA NA NA NA NA NA 95.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 96.15 NA NA NA NA NA NA NA NA NA K cassette CG40263,F_chr2RHet_1265687_1293040,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1293394_1335781 chr2RHet_1293394_1324445;chr2RHet_1324541_1335781 chr2RHet_1324446_1324540 chr2RHet_1293236_1293393;chr2RHet_1335782_1335833 97.92 95.00 95.83 75.00 95.00 95.45 90.62 98.85 98.39 NA NA 94.59 100.00 96.97 95.24 92.86 100.00 94.12 100.00 90.91 100.00 NA 86.67 92.86 100.00 100.00 91.67 NA NA 83.33 90.62 100.00 NA 94.74 90.91 NA 100.00 100.00 100.00 100.00 100.00 97.92 95.00 100.00 100.00 100.00 90.00 100.00 97.92 100.00 100.00 100.00 85.71 100.00 96.97 100.00 87.50 100.00 K alternative_donor Abl,I_chr3L_16622304_16639909,RI_chr3L_16652567_16654512 chr3L - chr3L_16618375_16619627 chr3L_16618375_16619372 chr3L_16616737_16618374;chr3L_16619628_16619716 18.64 13.41 18.29 56.07 4.92 7.84 40.40 27.08 16.87 18.00 29.03 36.36 44.64 15.79 16.67 29.49 11.76 13.04 29.11 17.84 15.58 27.61 18.64 17.57 28.95 31.15 29.76 25.00 34.15 21.43 27.91 26.53 23.20 16.80 18.48 52.22 12.03 13.41 13.51 21.43 40.96 17.33 16.36 31.52 16.84 23.08 9.62 34.97 20.42 22.41 18.89 15.52 10.91 16.00 13.19 16.67 16.07 22.35 K alternative_donor Syx4,I_chrX_2636831_2636971 chrX - chrX_2636831_2637483 chrX_2636831_2636949 chrX_2636731_2636830;chrX_2637484_2637679 1.98 2.00 1.82 2.38 1.89 2.00 1.64 2.78 1.72 NA 4.00 3.80 4.55 3.77 6.00 2.70 2.27 2.00 1.79 1.19 2.94 2.38 2.00 2.70 0.00 0.00 0.00 6.25 4.35 2.13 1.27 0.00 2.08 2.30 1.69 4.76 1.61 0.00 1.41 1.75 0.00 2.91 1.96 0.00 0.00 1.18 0.00 3.39 3.30 1.72 3.12 2.70 0.00 0.00 1.45 1.82 2.04 0.00 K alternative_acceptor CG5991 chr3R + chr3R_19876703_19877425;chr3R_19876703_19877411 chr3R_19876703_19877421 chr3R_19876688_19876702;chr3R_19877426_19877477 42.86 NA NA 33.33 NA NA 50.00 50.00 53.85 NA NA 45.45 NA 50.00 63.64 36.36 40.00 NA 42.86 60.00 NA NA 40.00 NA NA 42.86 40.00 50.00 44.44 28.57 14.29 NA 41.67 42.86 50.00 42.86 33.33 20.00 NA 47.06 28.57 43.75 44.44 33.33 NA 50.00 42.86 50.00 46.67 40.00 55.56 NA 30.00 33.33 60.00 37.50 16.67 44.44 K jcn_only_AA Nup153,I_chrX_16495232_16495296 chrX + chrX_16495232_16495408 chrX_16495232_16495296 chrX_16495132_16495231;chrX_16495409_16499819 1.01 0.00 1.11 1.04 0.00 1.23 4.30 0.00 0.47 2.53 1.39 0.60 1.72 2.15 1.08 0.00 0.00 0.00 1.20 0.00 1.47 2.47 0.59 1.36 0.00 1.08 0.80 0.00 0.00 0.00 1.25 0.00 1.02 0.00 1.82 0.00 1.99 0.84 0.55 2.56 3.12 1.01 0.00 1.82 2.50 1.54 1.49 2.20 1.42 0.00 0.70 1.28 0.00 0.00 0.00 1.72 0.00 0.00 K alternative_acceptor Su(var)2-HP2 chr2R - chr2R_10499194_10499285 chr2R_10499197_10499285 chr2R_10499286_10499446;chr2R_10499125_10499193 90.45 90.00 91.67 72.22 75.00 100.00 94.74 88.89 88.46 87.50 87.50 95.24 80.00 88.89 91.67 94.12 NA 90.91 88.89 96.00 90.00 100.00 87.50 93.33 92.86 100.00 83.33 NA 87.50 100.00 90.00 NA 90.91 88.89 100.00 93.75 86.67 100.00 75.00 95.45 NA 88.46 84.62 90.91 NA 90.00 88.89 100.00 90.91 100.00 88.89 100.00 NA NA 75.00 90.91 NA NA K intron_retention Tsp39D chr2L + chr2L_21356683_21356739 chr2L_21356682_21356683;chr2L_21356739_21356740 chr2L_21356104_21356682;chr2L_21356740_21358273 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 NA 14.81 0.00 NA 9.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Dsp1,I_chrX_16231287_16231413 chrX + chrX_16227804_16228333 chrX_16227803_16227804;chrX_16228333_16228334 chrX_16227698_16227803;chrX_16228334_16228446 100.00 100.00 96.30 100.00 100.00 100.00 100.00 98.00 98.31 100.00 100.00 98.18 96.30 100.00 100.00 100.00 95.24 100.00 100.00 98.44 100.00 100.00 93.02 100.00 100.00 100.00 100.00 100.00 100.00 93.55 97.06 100.00 100.00 100.00 100.00 100.00 96.00 100.00 95.45 100.00 100.00 97.92 96.30 97.06 NA 100.00 100.00 100.00 98.28 96.15 97.30 100.00 100.00 94.74 100.00 94.12 93.33 100.00 K intron_retention MRP,F_chr2L_12727117_12736035 chr2L + chr2L_12719241_12722354 chr2L_12719240_12719241;chr2L_12722354_12722355 chr2L_12719072_12719240;chr2L_12722355_12722484 7.48 6.43 10.17 19.46 10.10 11.90 5.38 8.78 8.77 6.45 11.69 7.89 5.95 10.79 9.05 8.89 9.42 4.94 8.88 8.20 8.28 19.41 4.21 5.68 11.70 8.12 4.74 4.40 7.35 5.02 11.28 2.86 4.87 9.12 10.00 7.17 4.75 5.21 5.58 8.54 7.32 9.75 9.22 4.29 7.48 7.02 9.64 5.77 9.46 7.32 5.24 8.63 5.31 5.71 11.32 6.19 2.03 3.87 K intron_retention vari,I_chr2L_20789508_20789585,I_chr2L_20792267_20794059 chr2L - chr2L_20789424_20789585 chr2L_20789423_20789424;chr2L_20789585_20789586 chr2L_20789408_20789423;chr2L_20789586_20789660 0.72 0.00 2.00 1.19 0.00 0.00 5.71 3.53 2.65 0.00 1.47 1.72 0.00 0.00 2.60 5.63 0.00 1.54 0.00 2.50 0.00 3.51 1.18 0.00 1.33 0.00 1.74 0.00 0.00 0.00 1.41 0.00 0.00 2.88 0.00 2.53 0.53 0.00 0.57 2.40 5.45 0.73 0.00 2.04 0.87 0.72 0.00 0.00 1.55 0.88 1.43 1.41 0.00 0.00 0.00 0.00 0.00 3.28 K intron_retention I_chrX_2036036_2037024,Pgd chrX + chrX_2039448_2039522 chrX_2039447_2039448;chrX_2039522_2039523 chrX_2039132_2039447;chrX_2039523_2039746 0.00 0.00 0.00 0.61 0.00 0.00 0.61 1.03 0.60 5.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 NA NA NA 0.00 NA 6.67 0.00 0.00 0.00 0.00 0.00 0.54 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 NA 0.00 0.00 NA NA NA 0.00 NA 0.00 NA NA 0.00 K alternative_acceptor CG9399,I_chr3R_5403032_5403329 chr3R - chr3R_5399318_5399524;chr3R_5399255_5399524 chr3R_5399352_5399524 chr3R_5399525_5399559;chr3R_5399076_5399254 28.57 NA NA 25.00 NA 40.00 44.44 NA 32.14 20.00 15.38 25.00 NA 54.55 26.32 14.29 57.14 NA NA 52.63 25.00 NA NA 26.67 NA 9.09 28.57 NA NA NA 28.57 NA 33.33 10.00 60.00 NA 27.27 NA 60.00 55.00 33.33 NA 28.57 30.00 40.00 43.75 28.57 41.67 NA 11.11 16.67 NA 10.00 22.22 NA NA NA 50.00 N intron_retention ras chrX + chrX_10640260_10640321 chrX_10640259_10640260;chrX_10640321_10640322 chrX_10640109_10640259;chrX_10640322_10640360 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette I_chr2L_6956220_6956307,sip2_CG9188 chr2L - chr2L_6963555_6963938 chr2L_6963555_6963743;chr2L_6963856_6963938 chr2L_6963744_6963855 chr2L_6961895_6963554;chr2L_6963939_6964073 17.86 20.83 24.00 16.46 17.86 25.00 26.87 35.85 22.06 4.65 15.69 14.00 11.76 23.26 19.30 36.14 22.22 19.61 23.33 12.58 20.41 40.62 16.24 15.00 16.33 34.48 25.81 15.38 15.69 21.54 18.46 17.39 15.91 28.92 12.31 22.41 17.86 21.05 22.37 11.86 12.07 22.77 21.74 16.87 22.22 14.86 11.11 7.08 24.73 16.90 19.47 17.07 17.65 12.07 20.00 13.79 12.90 10.34 K intron_retention Ect4,I_chr3L_8075556_8086158,C_chr3L_8091754_8101552,I_chr3L_8091826_8092243,I_chr3L_8098397_8101385,I_chr3L_8098758_8101738,I_chr3L_8100030_8101385 chr3L + chr3L_8098160_8098226 chr3L_8098159_8098160;chr3L_8098226_8098227 chr3L_8097980_8098159;chr3L_8098227_8098396 0.41 0.87 0.72 1.65 0.00 0.98 0.00 1.14 0.83 1.37 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.86 0.00 0.84 0.00 2.79 1.33 0.65 3.54 0.00 1.94 6.32 7.69 0.00 0.00 0.00 0.00 0.59 1.61 1.48 0.00 0.81 0.00 1.75 4.82 0.41 0.00 0.00 0.00 0.00 0.00 0.81 1.59 0.98 1.28 0.00 0.00 0.00 0.78 0.00 0.00 0.00 K alternative_donor MAPk-Ak2,RI_chrX_5655618_5656137,I_chrX_5656715_5657427,I_chrX_5656715_5657893,I_chrX_5656715_5657974 chrX - chrX_5656715_5658126;chrX_5656715_5658101 chrX_5656715_5658141 chrX_5656615_5656714;chrX_5658142_5658214 1.72 2.50 1.75 0.00 2.04 2.50 4.94 1.12 0.82 2.56 2.33 2.15 0.00 2.22 1.89 1.25 0.00 2.22 1.89 1.05 0.00 3.92 1.52 1.72 0.00 0.00 7.02 6.06 0.00 0.00 1.59 5.56 0.00 1.45 3.23 2.38 1.64 2.00 1.72 2.27 0.00 0.00 0.00 1.79 0.00 4.08 2.00 0.00 2.30 0.00 0.00 0.00 0.00 2.70 0.00 2.04 2.13 3.57 K intron_retention CG11523 chr3L - chr3L_22259084_22259175 chr3L_22259083_22259084;chr3L_22259175_22259176 chr3L_22258906_22259083;chr3L_22259176_22259747 96.49 93.33 100.00 96.00 100.00 100.00 95.24 97.37 96.55 NA 100.00 96.77 85.71 100.00 100.00 96.97 100.00 92.86 100.00 96.43 91.67 91.67 NA 100.00 NA 100.00 91.67 NA 93.75 100.00 100.00 91.67 92.31 96.88 100.00 91.67 90.00 NA 90.00 95.45 89.66 97.06 100.00 NA 92.31 97.78 100.00 88.57 96.97 92.86 90.91 100.00 NA 81.82 94.12 88.24 92.86 98.33 K alternative_acceptor Gbeta13F,I_chrX_15754284_15755167,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15754356_15755184;chrX_15754356_15755256;chrX_15754356_15755172;chrX_15754356_15755268 chrX_15754356_15755409 chrX_15754256_15754355;chrX_15755410_15755509 4.00 4.76 6.25 0.00 0.00 NA 0.00 2.00 4.88 NA NA 0.00 2.17 0.00 5.56 1.89 0.00 5.00 3.23 2.00 NA 0.00 4.00 6.67 6.67 NA 5.00 NA 18.18 5.88 4.55 NA 6.45 2.04 6.25 NA 4.35 NA NA 3.57 7.14 8.33 3.03 4.35 0.00 4.00 NA 0.00 2.50 NA 0.00 6.25 NA 0.00 0.00 NA 10.00 6.25 K intron_retention I_chr2R_4783150_4783708,Ggamma1,noncoding_5300 chr2R + chr2R_4789042_4789832 chr2R_4789041_4789042;chr2R_4789832_4789833 chr2R_4788986_4789041;chr2R_4789833_4790635 100.00 100.00 100.00 99.10 100.00 100.00 98.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.85 100.00 100.00 100.00 100.00 98.48 100.00 100.00 98.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.11 97.83 100.00 K alternative_acceptor l(2)35Cc,RI_chr2L_15256698_15256752 chr2L + chr2L_15256698_15256752 chr2L_15256698_15256748 chr2L_15256624_15256697;chr2L_15256753_15256852 97.06 100.00 92.86 93.75 100.00 100.00 90.48 95.00 96.67 NA 92.31 100.00 92.31 100.00 100.00 92.86 100.00 90.00 100.00 97.06 100.00 100.00 95.65 100.00 81.82 100.00 100.00 100.00 90.91 100.00 90.91 90.91 90.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 90.91 100.00 100.00 100.00 75.00 95.24 100.00 NA 95.65 100.00 100.00 91.67 94.12 94.12 94.12 84.21 95.24 93.33 N intron_retention Stat92E,I_chr3R_16367780_16376442,I_chr3R_16367780_16377802,I_chr3R_16367815_16368548,att-ORFB chr3R - chr3R_16367276_16367331 chr3R_16367275_16367276;chr3R_16367331_16367332 chr3R_16366245_16367275 12.12 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.12 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention east,CR_chrX_1912038_1912737 chrX + chrX_1912243_1912737 chrX_1912242_1912243;chrX_1912737_1912738 chrX_1912113_1912242;chrX_1912738_1912837 5.41 0.00 7.41 4.44 0.00 9.09 5.71 3.92 3.70 NA 3.85 6.00 9.09 0.00 16.67 7.50 8.70 0.00 6.67 6.56 0.00 11.11 9.09 0.00 13.04 0.00 5.13 NA 0.00 20.83 5.41 NA NA 4.76 NA 5.88 10.34 4.76 7.89 16.00 NA 3.92 8.33 13.04 0.00 0.00 0.00 0.00 5.00 0.00 14.29 0.00 11.11 NA 16.67 NA 12.50 0.00 K intron_retention CG32529 chrX + chrX_19798479_19798541 chrX_19798478_19798479;chrX_19798541_19798542 chrX_19798319_19798478;chrX_19798542_19798710 0.50 0.29 0.80 1.60 0.00 0.81 1.47 1.29 0.69 0.56 0.78 0.64 0.00 0.44 1.57 1.57 0.50 0.00 0.00 0.37 0.00 0.70 0.71 1.03 1.28 5.76 1.21 1.74 2.23 0.58 0.00 0.00 0.33 0.63 0.00 0.36 0.67 0.00 1.12 0.19 3.92 0.00 0.00 0.00 0.82 0.00 0.00 0.49 0.94 0.33 0.76 0.00 0.00 0.00 0.37 0.00 0.00 0.95 K jcn_only_AA MRG15,I_chr3R_11103293_11103335,l(3)neo43,F_chr3R_11104164_11104239 chr3R - chr3R_11103278_11103335 chr3R_11103293_11103335 chr3R_11103336_11103435;chr3R_11103193_11103277 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 1.47 0.00 0.00 2.60 0.00 0.00 0.00 1.92 3.57 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 1.72 1.92 0.00 0.00 0.00 3.51 1.89 3.95 0.00 0.00 0.00 7.50 1.79 2.35 3.08 3.96 3.66 0.00 0.00 0.00 3.45 2.08 2.00 0.00 1.39 0.00 K alternative_acceptor Imp,RI_chrX_10699665_10700695 chrX - chrX_10692578_10692651 chrX_10692599_10692651 chrX_10692652_10693026;chrX_10691869_10692577 9.53 13.33 10.13 10.94 6.85 6.35 10.81 9.35 11.92 12.50 7.23 10.94 11.27 11.27 8.05 9.80 7.69 9.21 11.69 11.11 9.38 16.00 8.08 7.25 13.04 15.62 5.43 7.27 13.51 7.84 7.69 6.25 11.11 8.40 9.76 17.78 7.14 8.51 9.23 14.08 28.57 8.45 10.61 10.34 12.50 4.00 6.25 9.09 12.06 7.69 4.00 11.54 5.56 NA 7.78 4.35 14.71 9.68 K alternative_donor Nedd4,I_chr3L_17532828_17532882,I_chr3L_17532828_17533787,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17532828_17533790 chr3L_17532837_17533790 chr3L_17533791_17533887;chr3L_17532728_17532827 77.42 80.95 81.54 90.14 76.47 68.66 51.19 78.95 74.02 76.47 95.24 70.18 75.68 75.00 68.35 75.00 70.00 83.58 70.83 76.07 89.19 84.00 80.83 82.28 86.15 66.67 77.01 77.50 68.12 80.00 77.94 71.79 75.71 74.47 71.19 72.46 77.48 76.34 83.33 68.18 75.00 79.63 81.08 80.26 84.44 79.55 75.61 84.09 73.79 81.63 78.41 67.16 67.57 77.42 77.61 78.57 86.49 86.84 K cassette Nipped-B,I_chr2R_580301_580515,I_chr2R_580453_580515,I_chr2R_580989_582555,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_580301_580515 chr2R_580301_580367;chr2R_580453_580515 chr2R_580368_580452 chr2R_580236_580300;chr2R_580516_580582 87.50 NA 83.33 90.00 NA 83.33 86.84 88.89 94.44 NA NA 93.75 91.67 100.00 87.50 93.75 NA NA 71.43 70.59 NA 87.50 NA 100.00 NA 87.50 90.00 50.00 100.00 100.00 94.12 85.71 75.00 90.48 NA 87.50 NA NA NA 100.00 70.00 94.74 88.89 100.00 72.73 87.50 NA 84.21 85.00 85.71 75.00 NA NA NA 100.00 NA 75.00 94.12 K intron_retention CG5515,I_chr3R_20017846_20017911,I_chr3R_20018643_20018703 chr3R - chr3R_20014184_20014237 chr3R_20014183_20014184;chr3R_20014237_20014238 chr3R_20013404_20014183;chr3R_20014238_20014329 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 8.00 8.51 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Nca,CG7646 chr3L + chr3L_19986423_19988473 chr3L_19988052_19988473 chr3L_19988474_19988523 95.41 NA NA 80.95 NA NA NA 96.97 97.30 NA NA 95.00 NA NA NA NA NA NA 90.48 95.83 NA NA NA NA NA NA NA NA NA NA NA NA NA 86.36 NA 95.83 NA NA NA NA NA 90.48 NA NA NA NA NA NA 96.55 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG3194,CG17266 chr2R - chr2R_2560392_2560453 chr2R_2560392_2560447 chr2R_2559013_2560391;chr2R_2560454_2560850 56.52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.71 NA 63.64 NA NA NA NA NA NA NA NA NA 45.83 NA NA NA NA NA NA NA 52.00 NA NA NA NA NA 56.52 NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG31033,RI_chr3R_25658089_25658914 chr3R - chr3R_25658089_25658914;chr3R_25658095_25658914 chr3R_25658071_25658914 chr3R_25658915_25659003;chr3R_25657989_25658070 80.70 86.15 85.11 46.27 78.79 80.77 47.95 88.42 84.40 78.95 84.44 81.30 74.00 83.05 79.55 56.41 67.27 80.36 85.71 79.67 74.07 78.12 71.43 87.34 75.68 51.56 77.63 86.79 80.70 85.94 84.06 84.29 82.76 74.07 82.35 49.09 74.14 84.06 91.25 83.33 61.11 84.51 82.86 83.33 79.49 88.89 72.88 93.69 76.69 82.81 76.47 78.85 87.23 75.00 80.95 76.92 77.03 87.16 K jcn_only_AA drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389400_9390195;chr2R_9389597_9390195;chr2R_9389430_9390195 chr2R_9389714_9390195 chr2R_9390196_9390251;chr2R_9389318_9389399 0.00 0.00 0.00 2.47 0.00 0.00 1.01 0.00 1.83 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 1.40 0.00 2.08 1.10 3.08 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 3.03 0.00 1.72 0.00 3.51 0.00 0.00 0.00 NA 0.00 5.56 0.00 3.33 0.00 1.28 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention eIF-5A,I_chr2R_19946299_19946454,I_chr2R_19946657_19946733,RI_chr2R_19946806_19946861,I_chr2R_19948517_19948682 chr2R + chr2R_19946657_19946718 chr2R_19946656_19946657;chr2R_19946718_19946719 chr2R_19946588_19946656;chr2R_19946719_19946799 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.07 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG16952,RI_chrX_15764587_15765393,I_chrX_15766003_15766047 chrX + chrX_15769239_15769339 chrX_15769239_15769300 chrX_15769171_15769238;chrX_15769340_15769402 98.70 100.00 96.43 97.22 88.89 96.30 96.43 97.22 97.78 100.00 100.00 100.00 100.00 100.00 96.43 100.00 93.75 100.00 100.00 95.77 100.00 96.97 100.00 100.00 100.00 100.00 96.30 92.86 100.00 100.00 100.00 97.87 100.00 97.62 100.00 95.24 100.00 95.00 100.00 98.33 97.87 95.12 100.00 100.00 96.00 98.63 96.43 98.70 97.87 90.91 97.06 100.00 100.00 96.00 100.00 100.00 100.00 98.55 K alternative_acceptor CG31033,RI_chr3R_25658089_25658914 chr3R - chr3R_25658089_25658914;chr3R_25658095_25658914 chr3R_25658071_25658914 chr3R_25658915_25659003;chr3R_25657989_25658070 86.84 93.18 85.29 57.89 86.36 90.91 64.10 91.04 87.01 81.48 93.33 85.71 81.82 87.80 89.47 66.67 81.82 86.84 92.31 87.65 80.56 85.71 78.18 94.34 80.00 68.57 82.69 89.19 84.62 86.96 85.71 89.58 81.25 85.29 91.11 62.50 86.11 91.30 86.89 92.00 78.43 87.00 87.50 89.58 84.91 90.36 83.78 91.46 84.09 88.37 86.36 85.71 90.91 88.24 89.09 90.00 83.67 86.92 K jcn_only_AA Irbp chr3R + chr3R_7236841_7236963 chr3R_7236841_7236941 chr3R_7236778_7236840;chr3R_7236964_7238112 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG16758,I_chr3L_2501142_2502594,I_chr3L_2502724_2503142 chr3L - chr3L_2502724_2503142;chr3L_2500463_2503142 chr3L_2501142_2503142 chr3L_2503143_2503242 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 NA NA 0.00 NA 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Pitslre,I_chr3L_20764965_20765781,I_chr3L_20764965_20766192,I_chr3L_20764965_20766212,I_chr3L_20766064_20766192,I_chr3L_20766064_20766215,RI_chr3L_20766064_20766893,I_chr3L_20766311_20766664,I_chr3L_20766311_20766893,I_chr3L_20766773_20766893 chr3L + chr3L_20764709_20766893 chr3L_20764965_20766893 chr3L_20766894_20766993;chr3L_20764640_20764708 100.00 100.00 NA NA NA NA NA NA 96.55 100.00 NA NA NA NA NA NA NA NA NA 95.83 NA NA 100.00 100.00 100.00 NA 100.00 100.00 96.43 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 93.94 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 95.24 NA K intron_retention RI_chr2L_8218680_8218853,Pvr,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8221968_8222225 chr2L_8221967_8221968;chr2L_8222225_8222226 chr2L_8221488_8221967;chr2L_8222226_8222376 80.83 81.30 80.00 83.00 87.76 89.23 88.61 93.46 85.32 72.46 85.71 84.56 89.71 88.00 87.13 84.93 83.33 88.31 90.00 78.41 82.19 77.59 60.87 71.13 74.42 85.48 70.75 73.33 79.07 78.07 80.68 80.65 76.74 93.52 84.51 88.16 72.36 80.99 77.91 80.83 77.05 84.28 86.15 81.06 66.23 77.10 76.43 78.26 81.44 68.10 78.31 85.48 75.96 76.67 89.32 77.19 73.15 74.55 K intron_retention I_chr2L_8213024_8213227,CG8360 chr2L + chr2L_8213283_8213336 chr2L_8213282_8213283;chr2L_8213336_8213337 chr2L_8213228_8213282;chr2L_8213337_8213402 8.82 6.67 0.00 8.33 0.00 4.44 8.33 10.29 9.76 0.00 7.41 6.67 12.50 9.09 4.26 8.51 10.53 10.20 2.78 6.74 9.68 9.46 16.28 14.63 8.33 4.17 12.50 40.00 14.29 5.00 13.64 12.00 10.87 10.00 8.82 21.21 8.00 9.30 10.81 12.24 7.41 8.82 3.85 11.76 7.14 10.42 2.78 11.76 10.34 12.12 6.56 9.76 5.41 7.14 5.56 5.00 4.29 9.43 K intron_retention syd,I_chr3L_7924891_7925400 chr3L - chr3L_7920921_7921016 chr3L_7920920_7920921;chr3L_7921016_7921017 chr3L_7920860_7920920;chr3L_7921017_7921217 46.15 36.36 44.44 15.00 47.06 47.06 68.75 47.06 48.48 47.06 52.94 34.78 46.15 NA 50.00 45.00 36.36 35.71 71.43 34.15 56.25 70.83 44.00 35.29 71.43 80.00 53.33 NA 58.33 29.41 52.00 35.71 40.00 48.15 40.00 66.67 47.83 26.32 31.25 NA 73.33 46.88 46.15 60.00 31.25 46.15 40.00 30.30 45.83 50.00 39.13 NA 35.71 NA NA 23.53 36.36 26.09 K cassette CG11727,CREI_chrX_11327451_11328532 chrX - chrX_11330430_11331055 chrX_11330430_11330807;chrX_11330826_11331055 chrX_11330808_11330825 chrX_11329762_11330429;chrX_11331056_11331170 75.00 NA NA 100.00 NA NA NA NA 69.23 NA NA NA NA NA NA NA NA NA NA 92.86 NA 36.36 62.50 75.00 NA NA NA NA 36.36 75.00 NA NA 90.91 87.50 77.78 NA NA NA NA NA NA 75.00 NA NA NA NA NA 71.43 75.00 NA 54.55 NA NA NA NA NA NA NA K cassette CG5522 chr2R + chr2R_12677421_12678243 chr2R_12677421_12677660;chr2R_12677772_12678243 chr2R_12677661_12677771 chr2R_12677217_12677420;chr2R_12678244_12679955 1.37 1.00 1.92 1.42 1.13 1.08 0.94 1.05 1.59 1.10 1.34 2.56 1.04 1.08 0.97 1.23 1.97 1.82 0.94 1.93 1.88 2.34 1.30 1.70 1.92 0.55 2.02 1.95 1.01 1.03 1.40 2.10 1.19 1.14 1.28 3.47 0.92 1.44 1.33 0.97 1.37 0.85 1.41 1.22 1.03 1.78 2.00 1.41 0.90 1.68 1.08 1.60 2.78 2.24 0.45 1.61 2.12 2.73 K intron_retention CG9184 chr3L - chr3L_1322703_1322751 chr3L_1322702_1322703;chr3L_1322751_1322752 chr3L_1322541_1322702;chr3L_1322752_1323409 35.12 NA NA NA NA NA NA NA 22.22 NA NA NA NA NA NA NA NA NA NA 28.57 NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 42.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention l(1)G0230 chrX + chrX_10107519_10107592 chrX_10107518_10107519;chrX_10107592_10107593 chrX_10107314_10107518;chrX_10107593_10107804 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Mi-2 chr3L - chr3L_19881576_19881637 chr3L_19881579_19881637 chr3L_19881638_19881714;chr3L_19881332_19881575 15.68 16.96 14.42 12.50 13.41 19.59 11.76 11.97 12.61 17.35 12.36 15.96 20.31 14.61 15.93 12.15 17.46 15.71 10.53 15.79 28.40 15.00 15.68 19.87 18.75 7.89 12.03 21.43 12.95 14.63 14.77 14.08 16.79 13.87 19.42 16.06 15.59 10.85 18.12 19.23 12.35 14.21 15.94 13.79 16.90 14.86 22.88 18.42 13.25 22.22 11.28 18.63 15.79 25.00 20.39 13.92 17.31 10.48 K intron_retention br,I_chrX_1517022_1518170 chrX + chrX_1531173_1531316 chrX_1531172_1531173;chrX_1531316_1531317 chrX_1531033_1531172;chrX_1531317_1531367 0.00 0.00 2.86 2.70 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8735,noncoding_5214 chr2R - chr2R_4487364_4487423 chr2R_4487363_4487364;chr2R_4487423_4487424 chr2R_4487316_4487363;chr2R_4487424_4487429 96.76 92.86 95.45 93.75 95.00 94.12 97.37 97.44 97.96 100.00 93.33 96.97 94.12 100.00 100.00 100.00 92.31 96.00 92.59 96.23 95.45 100.00 100.00 100.00 100.00 100.00 92.86 90.00 100.00 94.74 100.00 100.00 95.12 96.55 91.67 100.00 100.00 100.00 100.00 97.30 100.00 90.00 93.33 93.33 97.30 100.00 90.00 96.00 95.24 100.00 91.67 100.00 100.00 NA 96.30 100.00 94.74 96.49 K intron_retention l(2)03709,I_chr2R_14707617_14707700,I_chr2R_14708048_14708095 chr2R + chr2R_14708789_14708994 chr2R_14708788_14708789;chr2R_14708994_14708995 chr2R_14708689_14708788;chr2R_14708995_14709059 97.14 97.75 97.50 98.85 97.83 98.36 99.57 98.80 95.21 97.22 98.53 97.06 94.12 98.70 98.86 99.03 100.00 98.48 97.85 97.14 98.21 90.54 96.75 96.69 96.59 98.91 96.18 92.13 96.25 90.14 98.86 94.44 88.89 96.75 95.06 89.77 94.37 92.86 94.67 97.76 94.37 97.67 98.81 97.06 93.75 98.95 98.81 95.56 97.62 93.81 92.97 95.95 98.51 94.32 97.22 93.33 99.23 98.28 N intron_retention CG13384 chr2L + chr2L_8386142_8386216 chr2L_8386141_8386142;chr2L_8386216_8386217 chr2L_8386121_8386141;chr2L_8386217_8386384 78.79 80.77 71.43 84.51 82.28 80.28 85.04 80.33 80.39 77.65 72.53 73.64 75.61 81.97 78.65 76.70 78.12 70.00 77.38 71.33 86.36 86.73 87.18 92.92 84.62 78.79 79.27 89.92 69.64 76.09 69.32 75.36 77.47 79.38 71.76 100.00 83.89 83.82 82.41 80.58 86.67 74.86 75.00 90.36 69.70 69.11 71.67 70.89 71.67 100.00 76.47 82.86 100.00 74.36 79.76 80.28 78.79 71.08 K cassette CG14995,I_chr3L_4095875_4097205,I_chr3L_4096047_4096903 chr3L - chr3L_4098200_4101476 chr3L_4098200_4100779;chr3L_4100846_4101476 chr3L_4100780_4100845 chr3L_4098026_4098199;chr3L_4101477_4102697 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD mys,I_chrX_7958795_7961094 chrX + chrX_7955908_7957872;chrX_7955914_7957872;chrX_7955759_7957872;chrX_7956114_7957872;chrX_7955901_7957872;chrX_7956125_7957872;chrX_7955967_7957872 chrX_7955904_7957872 chrX_7957873_7958492;chrX_7955741_7955758 16.19 18.37 19.62 11.68 11.54 12.75 15.35 9.72 15.72 19.18 16.74 14.41 9.23 14.98 12.09 18.99 12.62 12.50 16.07 10.97 13.45 16.19 23.77 29.26 30.25 12.24 23.95 20.25 11.20 25.57 14.11 16.07 15.63 16.55 25.00 25.79 21.23 18.94 21.36 14.36 16.10 12.52 18.95 16.84 13.22 23.53 32.79 10.94 13.47 30.38 24.49 20.16 24.50 32.76 12.70 32.95 24.06 14.35 K intron_retention mri,RI_chr3L_201061_201173,I_chr3L_212783_212843 chr3L + chr3L_201763_201816 chr3L_201762_201763;chr3L_201816_201817 chr3L_201441_201762;chr3L_201817_202165 92.31 81.82 NA 95.83 NA NA 92.31 90.91 92.86 NA 80.00 90.48 NA NA NA 100.00 NA NA NA 84.62 NA NA 94.44 90.91 100.00 100.00 81.25 100.00 NA NA 83.33 87.50 100.00 90.00 100.00 100.00 83.33 88.89 94.12 NA 92.86 100.00 NA 90.00 NA 100.00 92.31 NA 92.86 93.33 87.50 NA NA 91.67 100.00 92.31 81.82 NA K intron_retention Doa,I_chr3R_24715823_24718923,I_chr3R_24747391_24747896 chr3R + chr3R_24745290_24745946 chr3R_24745289_24745290;chr3R_24745946_24745947 chr3R_24745214_24745289;chr3R_24745947_24746013 0.66 0.79 1.48 2.11 2.20 2.11 10.14 0.66 0.81 0.00 4.23 1.90 1.27 1.60 0.69 1.57 0.00 0.00 1.61 1.20 0.00 0.00 1.01 0.68 0.00 0.00 2.44 0.00 2.78 1.77 0.00 0.00 2.53 1.28 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.44 2.41 0.74 0.00 1.89 0.00 2.04 2.76 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Actn,I_chrX_1929229_1936079,I_chrX_1929235_1930613,I_chrX_1929445_1930439,I_chrX_1929474_1930439,usp,I_chrX_1935420_1935493,I_chrX_1935678_1936079,I_chrX_1935889_1936079 chrX - chrX_1929235_1936079 chrX_1929234_1929235;chrX_1936079_1936080 chrX_1929135_1929234;chrX_1936080_1936110 11.54 17.65 14.29 6.98 15.38 23.53 22.22 8.00 9.52 8.82 37.50 16.67 25.00 20.00 15.38 13.33 NA 13.33 25.00 11.94 15.00 16.22 11.54 10.87 0.00 23.53 7.89 13.33 10.20 1.85 25.00 3.12 5.95 14.71 10.81 14.29 6.45 8.33 8.93 10.94 9.09 16.07 NA 5.26 10.00 12.24 8.33 8.33 17.39 9.68 10.42 16.67 7.14 5.56 17.65 5.71 12.00 5.13 K cassette l(1)G0196,RI_chrX_21900456_21904036,I_chrX_21900456_21904601 chrX + chrX_21900456_21904471 chrX_21900456_21904030;chrX_21904142_21904471 chrX_21904031_21904141 chrX_21900356_21900455;chrX_21904472_21904538 76.67 77.78 69.05 59.57 70.00 75.86 84.44 75.00 78.46 84.62 93.75 60.78 94.44 76.67 76.67 88.37 76.00 81.25 92.31 69.70 96.00 78.57 70.18 73.68 78.26 86.36 73.53 86.67 81.82 81.48 84.44 72.22 84.38 86.96 75.00 50.00 70.97 68.18 63.27 66.67 69.57 77.14 78.26 84.09 95.00 69.57 70.83 77.78 83.56 66.67 68.85 84.00 50.00 71.43 82.22 75.76 75.68 75.00 K intron_retention CG12219 chrX - chrX_6195002_6195067 chrX_6195001_6195002;chrX_6195067_6195068 chrX_6193896_6195001;chrX_6195068_6195314 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 4.55 0.00 0.00 NA 5.88 0.00 0.00 3.64 2.27 0.00 0.00 3.12 0.00 10.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 4.35 0.00 0.00 5.00 NA 0.00 0.00 0.00 0.00 0.00 5.71 1.54 5.26 0.00 0.00 3.57 0.00 0.00 5.26 0.00 K alternative_acceptor mod(r),RI_chrX_515831_515923,I_chrX_516392_517480 chrX + chrX_516392_516478 chrX_516392_516466 chrX_516292_516391;chrX_516479_517065 42.63 63.64 36.36 60.00 55.56 54.55 47.06 39.13 36.36 NA 50.00 46.15 50.00 41.18 43.75 39.13 NA 31.58 46.15 43.33 35.71 44.44 47.06 50.00 55.56 NA 50.00 NA 34.62 30.77 50.00 50.00 31.03 41.67 30.00 NA 43.48 50.00 NA 47.83 40.00 40.62 33.33 50.00 34.48 35.71 33.33 52.63 41.94 33.33 47.06 NA 29.41 41.67 34.78 33.33 44.44 33.33 K intron_retention CG12207,I_chr3R_10115172_10115963,RE_chr3R_10124392_10124511 chr3R + chr3R_10126741_10126949 chr3R_10126740_10126741;chr3R_10126949_10126950 chr3R_10126142_10126740;chr3R_10126950_10127979 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA mub,RI_chr3L_21901021_21901163,I_chr3L_21908756_21909179 chr3L + chr3L_21914088_21914192;chr3L_21914088_21914156;chr3L_21914088_21914141 chr3L_21914088_21914153 chr3L_21914067_21914087;chr3L_21914193_21914427 10.34 NA NA NA NA NA NA NA 10.34 NA NA NA NA NA NA NA NA NA NA 11.54 NA 11.54 8.11 13.64 NA NA NA NA NA 15.00 NA NA 4.17 NA NA NA 7.89 7.41 19.23 12.00 NA 0.00 NA 4.55 NA NA NA 14.29 NA NA 8.33 NA NA NA NA NA NA NA K intron_retention CG10082,E_chr2R_17533874_17544072,RI_chr2R_17537544_17537615,I_chr2R_17541516_17542279,I_chr2R_17541573_17542279,I_chr2R_17543813_17543881 chr2R + chr2R_17540069_17542279 chr2R_17540068_17540069;chr2R_17542279_17542280 chr2R_17539942_17540068;chr2R_17542280_17542379 13.70 14.81 28.00 27.08 5.71 19.57 35.56 21.15 21.90 5.88 13.79 28.05 11.11 29.73 19.64 25.53 13.64 13.16 25.58 24.24 14.89 9.52 7.14 11.76 12.24 23.81 10.34 6.82 5.71 12.77 21.05 12.90 9.26 14.93 8.89 7.89 8.82 9.43 13.70 12.64 34.62 23.08 22.22 12.12 15.38 20.75 10.14 19.44 17.78 11.76 8.05 13.89 6.25 11.11 16.36 7.69 13.46 24.00 K intron_retention rad50,ppk12 chr2R + chr2R_18309244_18309298 chr2R_18309243_18309244;chr2R_18309298_18309299 chr2R_18308554_18309243;chr2R_18309299_18309512 0.00 0.00 0.00 17.07 0.00 0.00 1.82 0.00 3.03 NA 0.00 5.41 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 5.41 0.00 0.00 0.00 0.00 6.90 3.45 0.00 0.00 2.56 NA 0.00 2.44 0.00 13.64 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 NA 0.00 3.57 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K intron_retention sec63 chr3L + chr3L_7355554_7355621 chr3L_7355553_7355554;chr3L_7355621_7355622 chr3L_7354844_7355553;chr3L_7355622_7356870 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.00 0.42 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Cdc37,CG12020 chr3L + chr3L_1796838_1796910 chr3L_1796838_1796901 chr3L_1796769_1796837;chr3L_1796911_1796976 100.00 100.00 100.00 100.00 100.00 99.40 100.00 100.00 100.00 100.00 100.00 99.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.41 100.00 100.00 99.69 99.63 100.00 100.00 99.58 100.00 99.60 100.00 100.00 100.00 99.70 99.69 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.63 100.00 100.00 100.00 100.00 100.00 99.33 100.00 100.00 100.00 99.68 K intron_retention Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4847655_4848167 chrX_4847654_4847655;chrX_4848167_4848168 chrX_4847526_4847654;chrX_4848168_4848168 51.85 NA NA NA NA NA 50.00 63.64 51.85 NA NA 60.00 85.71 72.73 60.00 NA NA NA NA 69.23 NA NA 37.50 42.86 NA NA NA NA NA NA 57.14 NA NA 69.23 NA NA 29.41 45.45 29.41 NA NA 66.67 NA 41.67 NA NA 42.86 NA NA 46.15 33.33 NA NA NA 87.50 NA NA NA K cassette Gel,I_chr3R_63962_64024,I_chr3R_66533_66599 chr3R + chr3R_61871_62274 chr3R_61871_61960;chr3R_62004_62274 chr3R_61961_62003 chr3R_61844_61870;chr3R_62275_62526 20.00 NA 20.00 NA NA NA NA NA 30.77 NA NA NA NA NA NA 19.05 NA NA NA 11.43 NA NA NA NA NA NA NA NA NA NA NA NA NA 27.78 NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA 9.09 NA NA NA NA NA NA NA NA NA K intron_retention CG2051 chr3R - chr3R_1614436_1614487 chr3R_1614435_1614436;chr3R_1614487_1614488 chr3R_1613934_1614435;chr3R_1614488_1614666 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.97 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 1.06 2.27 2.33 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 1.61 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Su(var)2-10,RI_chr2R_5006333_5006392 chr2R + chr2R_5006553_5008282 chr2R_5006552_5006553;chr2R_5008282_5008283 chr2R_5006405_5006552;chr2R_5008283_5008324 79.17 82.50 82.35 97.22 84.00 79.17 80.85 80.56 80.30 73.08 81.25 75.44 83.33 88.89 75.76 85.71 96.43 82.61 79.31 78.12 85.19 90.48 76.67 78.57 71.74 96.55 80.56 73.53 71.43 70.97 79.17 73.08 80.39 80.00 71.88 92.11 76.92 67.44 74.47 74.07 85.29 78.18 78.26 77.42 71.43 82.86 66.67 75.00 81.82 81.58 70.73 75.00 84.62 80.00 76.67 76.47 68.57 80.00 K intron_retention CG10082,E_chr2R_17533874_17544072,I_chr2R_17543813_17543881 chr2R + chr2R_17542413_17542474 chr2R_17542412_17542413;chr2R_17542474_17542475 chr2R_17542280_17542412;chr2R_17542475_17542551 0.00 1.92 0.00 0.00 0.00 0.00 2.17 4.84 4.46 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 2.17 0.00 0.93 0.00 0.00 0.00 0.00 0.00 3.28 2.04 3.45 0.00 0.00 7.69 0.00 4.26 2.78 0.00 0.00 0.00 2.27 1.85 0.00 0.00 1.68 0.00 0.00 0.00 0.00 0.00 0.00 2.50 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA cul-2,I_chr2L_21659273_21659499,I_chr2L_21659273_21659705,I_chr2L_21659761_21659839,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21659273_21659839 chr2L_21659273_21659705 chr2L_21659173_21659272;chr2L_21659840_21659939 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.48 1.22 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 1.03 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.69 0.60 0.00 0.00 0.67 0.00 0.00 0.00 0.58 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 K jcn_only_AA CG13923,CG12022 chr3L + chr3L_1803568_1805009 chr3L_1803568_1803794 chr3L_1803433_1803567 69.77 70.83 78.79 70.97 61.76 82.61 52.08 76.79 67.27 NA 55.17 77.59 72.00 75.00 69.77 72.41 79.31 64.00 58.33 71.88 77.27 NA 94.03 63.27 62.50 73.33 25.00 50.00 75.68 82.61 68.00 64.00 65.00 78.05 66.67 65.62 75.44 57.45 73.33 55.93 58.06 72.58 60.00 56.25 78.79 76.47 78.57 69.23 61.22 74.51 63.89 65.62 82.00 68.63 69.44 68.52 73.91 88.00 K alternative_donor RpL28,RI_chr3L_3221710_3221877,I_chr3L_3221982_3222744,snoRNA:Or-CD11c,snoRNA:Or-CD11b chr3L - chr3L_3221982_3222787;chr3L_3221982_3222152;chr3L_3221982_3222574;chr3L_3221982_3222926;chr3L_3221982_3222847 chr3L_3221982_3222365 chr3L_3221882_3221981;chr3L_3222927_3222958 2.36 5.38 1.59 0.57 1.93 1.76 9.59 0.96 3.90 5.49 2.34 4.21 4.92 6.86 0.78 5.22 1.32 1.40 0.44 1.28 1.32 2.36 8.82 11.11 18.42 4.44 19.05 20.29 2.14 1.72 1.17 0.92 0.00 0.91 4.17 5.88 6.12 7.32 6.25 3.14 2.07 1.26 1.09 5.13 0.62 1.72 10.00 0.88 1.52 9.62 4.76 11.36 1.47 5.26 1.08 10.00 10.59 0.62 K intron_retention norpA,I_chrX_4219265_4219380 chrX + chrX_4247647_4247976 chrX_4247646_4247647;chrX_4247976_4247977 chrX_4247500_4247646;chrX_4247977_4248056 23.53 29.41 21.43 64.29 NA NA 52.94 26.92 25.00 NA NA 15.38 NA 30.00 NA 32.00 NA NA 41.67 12.50 NA 12.50 13.79 NA NA NA 22.73 NA 0.00 13.64 17.65 NA 18.52 31.03 12.50 NA 22.22 23.53 18.75 NA NA 32.14 NA 35.71 NA NA NA 15.00 31.03 NA 31.82 NA NA NA 27.27 NA NA NA K jcn_only_AA m-cup chr3R - chr3R_12971775_12971841 chr3R_12971778_12971841 chr3R_12971842_12972385;chr3R_12971649_12971774 100.00 100.00 100.00 100.00 100.00 96.55 100.00 97.14 100.00 NA NA 97.30 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 NA NA 95.45 100.00 95.65 100.00 NA 100.00 NA 96.97 94.74 100.00 100.00 100.00 100.00 98.04 NA 100.00 95.00 100.00 100.00 100.00 100.00 100.00 96.97 95.83 100.00 94.12 100.00 100.00 91.89 NA N intron_retention TSG101 chr3L + chr3L_16835972_16836255 chr3L_16835971_16835972;chr3L_16836255_16836256 chr3L_16835892_16835971;chr3L_16836256_16836333 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG8889 chr2R - chr2R_7914078_7914227 chr2R_7914105_7914227 chr2R_7914228_7914347;chr2R_7914036_7914077 0.00 NA NA 0.00 NA NA 5.56 0.00 0.00 NA NA 0.00 NA NA NA 5.56 NA NA NA 14.29 NA 5.56 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 5.56 NA NA 0.00 NA 0.00 NA NA NA NA 0.00 NA NA K intron_retention CG10359,CG10357 chr3L + chr3L_3613883_3614069 chr3L_3613882_3613883;chr3L_3614069_3614070 chr3L_3613749_3613882;chr3L_3614070_3614253 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.92 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 3.03 10.53 0.00 0.00 0.00 7.14 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 2.38 NA NA 0.00 0.00 0.00 0.00 5.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 3.85 0.00 NA NA 3.85 5.88 7.14 0.00 K jcn_only_AA kis,RI_chr2L_242745_242800,I_chr2L_242926_250756 chr2L - chr2L_242563_250756 chr2L_242745_250756 chr2L_250757_250774;chr2L_242508_242562 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 98.68 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA NA NA 100.00 NA 100.00 98.21 NA NA 100.00 NA NA 96.97 NA 100.00 95.65 85.00 NA NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA NA K intron_retention CG8494 chr2R + chr2R_10127619_10127715 chr2R_10127618_10127619;chr2R_10127715_10127716 chr2R_10127505_10127618;chr2R_10127716_10128082 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 19.05 NA NA NA NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA NA NA K jcn_only_AA ald chr3R + chr3R_13499199_13499298 chr3R_13499199_13499270 chr3R_13498643_13499198;chr3R_13499299_13499550 5.69 3.51 7.89 11.11 6.45 7.41 0.00 2.63 10.53 NA 19.05 4.35 4.35 0.00 5.41 7.14 0.00 11.11 6.45 11.96 6.06 4.76 6.35 14.29 0.00 6.90 6.82 3.03 5.41 21.43 0.00 11.36 12.77 5.66 2.56 0.00 1.79 2.70 3.51 4.92 3.33 4.35 10.00 5.71 2.00 8.62 12.50 5.71 4.17 1.41 6.06 10.34 0.00 12.73 6.67 5.56 6.25 4.08 K jcn_only_AA CG5446,I_chr2L_12427370_12427468 chr2L - chr2L_12427370_12427468 chr2L_12427388_12427468 chr2L_12427469_12427568;chr2L_12427270_12427369 99.51 99.72 99.64 99.79 99.50 99.55 99.23 99.54 99.69 99.04 100.00 99.56 100.00 98.82 100.00 98.70 99.03 100.00 100.00 99.17 99.63 99.53 99.41 99.51 99.21 100.00 98.81 99.60 98.12 99.68 98.22 98.50 99.51 100.00 99.61 99.24 99.13 99.48 99.54 99.39 99.42 99.42 100.00 99.76 99.18 99.79 99.28 98.97 99.61 99.72 99.24 99.51 99.73 99.52 99.68 99.25 99.19 99.34 K alternative_acceptor dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21308996_21309579;chr2L_21309092_21309579;chr2L_21309084_21309579 chr2L_21309019_21309579 chr2L_21309580_21309679;chr2L_21308992_21308995 3.85 NA NA 0.00 NA NA 14.29 12.50 12.50 NA NA NA NA NA NA 7.69 16.67 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA 9.09 0.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG2698,I_chr3R_3828169_3828941,I_chr3R_3828880_3828941,I_chr3R_3829483_3829715,I_chr3R_3830586_3830981 chr3R + chr3R_3829483_3829697;chr3R_3829483_3829555;chr3R_3829483_3829709 chr3R_3829483_3829721 chr3R_3829383_3829482;chr3R_3829722_3829815 17.31 21.95 16.67 22.22 26.92 14.29 14.29 20.59 12.68 11.11 14.29 13.04 5.88 21.62 17.65 18.33 16.00 0.00 15.69 16.05 15.15 14.29 18.75 24.56 15.91 14.29 19.44 18.52 16.13 17.95 20.29 15.38 7.89 21.54 18.42 10.64 22.50 20.45 14.29 18.99 9.52 20.45 17.50 20.69 30.77 11.11 15.15 12.31 8.11 22.03 23.81 15.00 28.57 18.42 21.15 17.31 34.00 4.26 K alternative_donor mld chr3R + chr3R_20415112_20416293 chr3R_20415155_20416293 chr3R_20416294_20417143;chr3R_20415078_20415111 80.00 85.71 85.71 66.67 NA NA 75.00 84.62 77.27 NA NA 77.78 85.71 85.71 NA 58.33 80.00 85.71 58.33 90.00 NA NA 88.89 85.71 NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA 77.78 NA 64.71 75.00 75.00 NA NA NA NA 91.67 NA NA NA NA NA 72.73 NA NA NA K intron_retention pod1 chrX + chrX_6697800_6699710 chrX_6697799_6697800;chrX_6699710_6699711 chrX_6697759_6697799;chrX_6699711_6700251 0.00 0.00 0.00 2.90 0.00 0.00 4.65 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.97 0.00 5.13 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 3.23 2.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 3.23 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2387583;chrX_2387710_2388436;chrX_2388671_2389073;chrX_2389272_2389644;chrX_2389762_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2395659 chrX_2387584_2387709;chrX_2388437_2388670;chrX_2389074_2389271;chrX_2389645_2389761;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2395660_2395759 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.75 0.59 0.00 0.00 2.20 0.00 0.00 1.11 0.00 0.00 0.00 1.22 0.99 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 1.01 0.76 0.00 0.00 1.12 0.00 1.25 0.99 0.00 0.73 0.00 1.39 0.00 0.00 NA 0.78 0.56 0.00 0.00 0.00 0.00 NA 1.02 0.00 0.00 0.00 K intron_retention Mi-2,Su(Tpl),F_chr3L_19887973_19889888 chr3L - chr3L_19889948_19890011 chr3L_19889947_19889948;chr3L_19890011_19890012 chr3L_19889898_19889947;chr3L_19890012_19890026 10.41 21.43 NA 13.79 NA NA 10.64 21.88 10.17 0.00 0.00 17.86 5.56 NA NA 11.76 NA NA NA 19.05 NA 37.50 7.69 9.09 7.69 NA 12.50 22.22 17.65 NA NA NA 18.52 3.33 17.65 4.35 14.81 6.25 NA 0.00 NA 9.68 NA 7.41 NA 5.88 NA 15.15 15.38 14.29 9.09 0.00 NA NA NA NA NA 0.00 K jcn_only_AD eIF-5A,I_chr2R_19945430_19946454,I_chr2R_19945576_19946006,I_chr2R_19945723_19946006,I_chr2R_19945783_19946006,I_chr2R_19945852_19946006,I_chr2R_19945875_19946006,I_chr2R_19945921_19946006,I_chr2R_19946299_19946454,I_chr2R_19946657_19946733,I_chr2R_19948517_19948682 chr2R + chr2R_19945921_19946006;chr2R_19945426_19946006;chr2R_19945875_19946006;chr2R_19945430_19946006 chr2R_19945576_19946006 chr2R_19946007_19946106;chr2R_19945343_19945425 0.00 0.00 0.00 0.02 0.07 0.00 0.05 0.03 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.02 0.05 0.00 0.00 0.01 0.03 0.00 0.06 0.00 0.10 0.00 0.10 0.19 0.13 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.04 0.04 0.07 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.01 0.00 0.17 0.00 0.03 0.08 0.02 0.08 0.04 0.00 K intron_retention Abl,I_chr3L_16622304_16639909,RI_chr3L_16652567_16654512 chr3L - chr3L_16618375_16619372 chr3L_16618374_16618375;chr3L_16619372_16619373 chr3L_16616737_16618374;chr3L_16619373_16619430 41.67 NA 41.67 35.85 NA NA 46.67 56.25 60.00 NA 14.29 33.33 41.67 70.00 50.00 64.71 NA NA 52.63 46.15 NA 31.03 40.00 NA 23.08 12.50 35.00 NA 14.29 38.89 66.67 NA 26.09 56.25 46.15 26.09 25.00 NA 41.67 50.00 41.18 62.50 NA 28.57 NA NA NA NA 62.50 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG31431 chr3R + chr3R_17696730_17697680;chr3R_17696730_17697693 chr3R_17696730_17697703 chr3R_17696406_17696729;chr3R_17697704_17697862 90.21 89.91 91.80 89.64 89.58 90.74 87.70 92.89 91.94 97.30 91.07 91.09 93.14 93.75 91.24 89.35 89.25 90.55 90.91 91.35 94.51 93.18 86.96 89.58 87.21 86.02 86.09 88.52 84.85 90.70 88.35 90.20 91.21 90.91 88.89 90.48 89.89 89.09 91.92 90.83 92.54 89.35 87.80 89.26 98.28 89.90 89.61 92.11 90.21 88.06 89.74 91.09 86.05 92.16 88.81 91.36 89.33 91.38 K jcn_only_AA MED10,I_chr3L_16225377_16225479 chr3L + chr3L_16225424_16225485 chr3L_16225424_16225479 chr3L_16225129_16225423;chr3L_16225486_16225579 100.00 100.00 100.00 98.54 100.00 98.44 98.37 99.39 99.32 100.00 98.41 98.48 100.00 100.00 99.02 99.07 100.00 97.30 100.00 98.70 98.53 100.00 100.00 97.85 97.83 98.13 97.78 98.61 100.00 98.75 100.00 98.18 100.00 99.24 100.00 98.39 100.00 100.00 98.48 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.72 100.00 100.00 100.00 97.65 100.00 100.00 100.00 100.00 K intron_retention CG2310,I_chr3R_25318474_25319142 chr3R - chr3R_25318474_25319136 chr3R_25318473_25318474;chr3R_25319136_25319137 chr3R_25318374_25318473;chr3R_25319137_25319162 47.16 47.37 50.00 55.56 33.33 39.29 62.50 37.50 38.89 41.67 66.67 43.90 NA 36.84 27.27 68.42 61.90 33.33 33.33 42.55 68.75 42.86 52.83 50.00 50.00 59.09 46.94 47.37 48.72 54.55 50.00 55.56 52.00 52.63 50.00 48.15 39.47 45.95 31.51 40.91 50.00 40.43 42.86 48.15 34.69 51.11 32.35 64.10 38.10 35.90 41.67 40.62 54.55 41.86 32.00 51.28 45.16 50.00 K intron_retention CG18317,RI_chr2L_1718492_1723881 chr2L - chr2L_1718152_1718226 chr2L_1718151_1718152;chr2L_1718226_1718227 chr2L_1717878_1718151;chr2L_1718227_1718358 0.00 0.00 0.00 7.14 0.00 0.00 6.52 0.00 3.30 4.29 0.00 1.59 0.00 6.06 0.00 0.00 0.00 0.00 9.68 6.85 0.00 24.39 5.77 3.17 6.67 0.00 8.70 10.14 15.87 0.00 0.00 0.00 4.17 5.71 6.06 0.00 0.00 0.00 2.53 5.77 0.00 5.71 0.00 1.75 0.00 3.12 0.00 3.17 5.71 6.82 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD phtf,I_chr2R_2629598_2630209 chr2R + chr2R_2632042_2632103 chr2R_2632045_2632103 chr2R_2632104_2632282;chr2R_2631158_2632041 100.00 100.00 100.00 100.00 NA 100.00 95.83 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA NA 100.00 NA 100.00 96.30 100.00 100.00 100.00 96.43 100.00 97.62 NA 97.73 100.00 100.00 100.00 100.00 100.00 100.00 97.87 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG34263 chr3L - chr3L_265642_265697 chr3L_265641_265642;chr3L_265697_265698 chr3L_265617_265641;chr3L_265698_265908 50.00 50.00 NA 19.05 NA NA 80.95 40.00 65.38 NA 84.62 37.50 72.73 NA NA 45.45 46.15 NA 35.71 24.00 80.00 NA NA NA NA NA 54.55 NA NA NA NA NA NA 52.94 NA NA 77.78 NA NA 50.00 NA 43.75 NA NA NA 50.00 NA NA 50.00 NA 46.15 NA NA NA 31.25 NA 29.41 NA K jcn_only_AA CG16971,I_chr3L_225856_225909,I_chr3L_225919_225983,RI_chr3L_225919_226004,I_chr3L_229245_230186 chr3L + chr3L_225919_226219;chr3L_225919_225983 chr3L_225919_226004 chr3L_225910_225918;chr3L_226220_226256 45.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 45.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Ser,I_chr3R_23013597_23017227 chr3R - chr3R_23009585_23013408 chr3R_23009584_23009585;chr3R_23013408_23013409 chr3R_23009530_23009584;chr3R_23013409_23013596 0.00 0.00 0.00 0.00 0.00 NA 14.81 12.50 0.00 NA 0.00 5.13 0.00 0.00 0.00 6.67 0.00 8.00 0.00 0.00 NA 0.00 0.00 3.45 0.00 0.00 0.00 NA NA 0.00 0.00 NA 5.26 5.71 NA 0.00 3.92 0.00 0.00 0.00 0.00 2.22 0.00 5.13 0.00 0.00 6.67 2.44 4.26 6.67 0.00 0.00 0.00 NA 0.00 0.00 NA 5.88 K alternative_donor CG11722,RI_chr3R_5873666_5874292 chr3R - chr3R_5870477_5870538 chr3R_5870477_5870534 chr3R_5870318_5870476;chr3R_5870539_5870781 90.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA 87.50 K cassette SWAP,RI_chrX_936466_936762,I_chrX_936466_936835,RI_chrX_936919_937245,RI_chrX_938935_938985,I_chrX_941459_982652 chrX + chrX_936466_937245 chrX_936466_936762;chrX_936919_937245 chrX_936763_936918 chrX_936366_936465;chrX_937246_937345 26.09 19.05 22.22 27.78 14.29 11.11 55.56 40.91 31.25 25.00 NA 21.88 71.43 44.44 33.33 46.15 27.27 15.38 61.54 26.09 NA 35.71 31.58 18.18 18.18 NA 25.00 NA 26.32 16.67 42.86 28.57 13.95 29.63 30.77 13.33 10.53 26.32 21.05 24.24 20.00 22.58 33.33 35.71 31.25 19.05 20.00 21.05 18.52 26.09 23.81 42.86 30.77 20.00 35.71 14.29 30.00 13.33 K intron_retention CG32549,I_chrX_18286289_18286367,RI_chrX_18301919_18303082 chrX - chrX_18298427_18298506 chrX_18298426_18298427;chrX_18298506_18298507 chrX_18298018_18298426;chrX_18298507_18298596 65.71 65.28 77.61 73.33 81.82 74.51 81.44 82.50 75.18 47.50 63.83 66.33 68.89 77.27 69.01 65.71 79.07 79.07 69.70 63.64 78.85 27.75 57.14 46.23 62.22 88.64 65.33 65.26 61.70 45.76 65.62 58.82 75.00 76.47 65.62 84.31 36.28 45.83 52.38 66.67 72.41 66.67 70.59 41.57 70.00 62.07 57.63 65.22 77.06 55.26 56.58 57.38 77.78 62.86 68.33 48.28 62.50 75.00 K cassette Crag,I_chrX_8494280_8494352 chrX + chrX_8491748_8493063 chrX_8491748_8492106;chrX_8492188_8493063 chrX_8492107_8492187 chrX_8491445_8491747;chrX_8493064_8493496 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.93 0.00 0.00 1.18 0.42 0.00 0.00 0.00 0.61 1.05 1.19 0.00 0.00 0.83 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 1.11 0.85 0.00 0.00 0.00 0.00 K intron_retention CG1103 chr3R + chr3R_164975_165034 chr3R_164974_164975;chr3R_165034_165035 chr3R_164766_164974;chr3R_165035_165640 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.38 100.00 100.00 98.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.03 100.00 100.00 100.00 100.00 99.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.46 100.00 98.68 100.00 100.00 K jcn_only_AD CG6707 chr3L - chr3L_9891303_9891622 chr3L_9891303_9891543 chr3L_9891029_9891302;chr3L_9891623_9891693 2.70 2.08 2.08 5.77 5.13 0.00 5.00 1.04 4.69 2.56 4.55 2.70 9.80 2.70 6.06 3.45 2.99 8.00 1.61 2.08 2.70 0.00 0.00 3.28 2.70 6.98 2.38 0.00 2.08 0.00 3.92 6.06 7.55 4.26 4.00 0.00 3.70 0.00 2.50 1.94 3.03 0.82 3.03 0.00 0.00 2.78 0.00 3.03 4.76 0.00 2.33 0.00 0.00 NA 4.48 0.00 2.86 5.26 K alternative_donor Ten-a chrX + chrX_12097912_12098171;chrX_12098018_12098171;chrX_12098012_12098171;chrX_12098030_12098171 chrX_12097945_12098171 chrX_12098172_12098306;chrX_12097907_12097911 0.00 NA 0.00 NA NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA K intron_retention CycA chr3L - chr3L_11821493_11821560 chr3L_11821492_11821493;chr3L_11821560_11821561 chr3L_11821288_11821492;chr3L_11821561_11821781 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6838,I_chr3L_22709306_22709668 chr3L - chr3L_22710167_22710293 chr3L_22710166_22710167;chr3L_22710293_22710294 chr3L_22710071_22710166;chr3L_22710294_22710303 95.74 97.83 100.00 97.40 94.74 98.15 97.53 92.05 92.79 90.70 89.36 93.14 94.23 97.62 91.18 90.67 92.50 95.24 91.67 96.08 97.67 89.83 98.33 93.75 97.67 98.61 97.01 91.30 98.61 100.00 95.31 98.28 97.27 93.02 95.24 98.33 88.33 89.47 89.89 94.57 98.72 93.33 97.83 96.43 96.30 98.85 95.92 97.30 93.81 98.36 94.92 95.74 92.00 95.74 93.94 93.02 97.10 99.15 K mutually_exclusive Eb1,RI_chr2R_2640290_2642206,I_chr2R_2640494_2642206,I_chr2R_2641187_2642206,RI_chr2R_2641944_2642025,I_chr2R_2641954_2642206,I_chr2R_2642491_2642549 chr2R + chr2R_2640494_2641684,chr2R_2641944_2642209 chr2R_2640494_2640577,chr2R_2641009_2642209 chr2R_2641685_2641943 chr2R_2640578_2641008 chr2R_2640394_2640493;chr2R_2642210_2642306 12.73 9.68 4.76 12.00 9.52 10.00 18.52 13.79 9.43 19.05 15.79 16.67 27.27 18.18 13.79 19.23 20.00 9.52 14.29 4.17 15.00 18.92 7.14 5.71 25.00 10.00 18.18 16.67 6.67 13.79 32.14 17.86 7.50 9.38 21.43 21.74 5.56 9.68 20.59 9.76 11.54 12.73 10.53 15.38 10.00 8.11 9.38 12.73 9.52 7.14 17.95 21.43 4.17 9.09 26.09 12.90 15.79 6.25 K jcn_only_AD Roughened,I_chr3L_1861677_1861777,I_chr3L_1861677_1861929,I_chr3L_1861677_1862177 chr3L - chr3L_1861677_1861777;chr3L_1861677_1862177 chr3L_1861677_1862060 chr3L_1861577_1861676;chr3L_1862178_1862277 99.57 98.60 99.34 99.30 100.00 98.92 99.74 99.40 99.49 100.00 98.98 99.60 98.98 99.35 100.00 100.00 99.59 99.38 99.08 99.67 100.00 98.99 100.00 100.00 100.00 100.00 99.67 100.00 98.89 99.68 98.81 100.00 99.49 98.45 98.74 99.81 99.38 100.00 99.58 98.35 99.78 99.13 99.04 98.64 98.39 99.72 100.00 99.67 99.25 100.00 99.49 99.57 99.38 99.63 99.04 99.67 100.00 99.36 K alternative_donor CG13933,I_chr3L_1773911_1773984 chr3L - chr3L_1772319_1772487 chr3L_1772319_1772479 chr3L_1772022_1772318;chr3L_1772488_1773369 87.50 77.78 91.67 94.74 100.00 70.00 68.75 100.00 82.35 NA NA 70.59 70.00 NA 88.89 80.00 88.89 84.62 84.62 95.45 60.00 88.89 87.50 100.00 90.00 90.00 83.33 NA 90.91 81.82 80.00 NA 81.82 85.71 NA NA 90.00 NA 88.89 91.67 87.50 93.33 100.00 NA 100.00 80.00 91.67 85.71 89.47 72.73 85.71 NA NA 88.89 84.62 81.82 100.00 60.00 K intron_retention fry,I_chr3L_9636648_9656042 chr3L - chr3L_9657112_9657176 chr3L_9657111_9657112;chr3L_9657176_9657177 chr3L_9656962_9657111;chr3L_9657177_9657344 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3L_12398261_12403200,Gap69C chr3L - chr3L_12408970_12409044 chr3L_12408969_12408970;chr3L_12409044_12409045 chr3L_12408095_12408969;chr3L_12409045_12409104 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 2.60 0.00 0.00 1.89 0.00 0.00 0.00 0.00 9.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 3.39 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 5.56 0.00 0.00 0.00 K jcn_only_AA CG32626 chrX - chrX_13728240_13728847;chrX_13727065_13728847 chrX_13727056_13728847 chrX_13728848_13729182 44.23 41.79 43.97 42.86 32.32 36.05 42.62 41.09 39.85 50.50 44.23 51.18 40.24 47.52 33.33 43.75 44.35 49.52 41.51 36.72 29.82 51.52 48.57 52.26 43.18 36.99 49.77 49.76 49.57 59.83 33.66 52.63 54.40 40.78 42.96 47.69 48.48 46.51 48.30 42.35 50.63 40.71 40.66 43.63 52.63 47.17 50.54 57.58 43.17 54.46 45.42 36.84 47.37 43.51 36.84 46.63 53.09 42.37 K jcn_only_AD CG7580,I_chr3L_17468694_17468750,I_chr3L_17468699_17468750 chr3L + chr3L_17468695_17468750 chr3L_17468699_17468750 chr3L_17468751_17468850;chr3L_17468599_17468694 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.14 0.13 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.15 0.00 0.00 0.06 0.13 0.05 0.12 0.00 K alternative_donor Rab5,I_chr2L_2361586_2364794 chr2L - chr2L_2360394_2360459 chr2L_2360394_2360455 chr2L_2359546_2360393;chr2L_2360460_2360569 96.15 100.00 91.67 93.48 96.30 93.33 97.44 93.75 91.92 100.00 100.00 91.36 95.24 96.00 93.48 95.29 97.22 96.43 98.08 94.20 96.15 95.65 96.55 97.96 96.55 100.00 87.80 91.67 100.00 100.00 97.73 100.00 92.86 95.77 96.15 100.00 96.43 96.43 85.71 96.88 95.45 92.39 90.00 100.00 94.12 97.06 97.44 90.00 93.69 97.22 100.00 94.44 95.00 95.45 95.83 97.96 98.04 95.45 K jcn_only_AA Pka-R2,I_chr2R_5911755_5913333,I_chr2R_5911755_5913354,I_chr2R_5911803_5913333 chr2R - chr2R_5911803_5913333;chr2R_5911755_5913333 chr2R_5911708_5913333 chr2R_5913334_5913352;chr2R_5911703_5911707 50.00 NA NA NA NA NA NA 54.17 36.84 NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 52.38 NA NA NA NA 40.00 NA NA NA NA NA NA 50.00 NA NA NA NA NA 33.33 NA NA NA N jcn_only_AA CG8790 chr3R + chr3R_9190952_9191016;chr3R_9190952_9193285;chr3R_9190952_9193295 chr3R_9190952_9193460 chr3R_9190661_9190951 100.00 100.00 100.00 99.33 100.00 100.00 100.00 100.00 100.00 100.00 82.35 98.84 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.32 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.02 98.78 99.32 100.00 100.00 99.35 100.00 100.00 100.00 98.80 100.00 100.00 100.00 100.00 100.00 K alternative_donor Uev1A,I_chr3L_5358186_5358359,I_chr3L_5358186_5358415,CREI_chr3L_5358186_5358453,I_chr3L_5358186_5359072,RI_chr3L_5358186_5359074,I_chr3L_5360875_5360954 chr3L - chr3L_5358186_5359228 chr3L_5358186_5358453 chr3L_5358086_5358185;chr3L_5359229_5359418 0.77 0.51 0.34 0.50 0.00 0.37 0.56 0.71 0.34 0.71 0.30 1.73 0.37 0.79 0.56 0.60 0.31 0.34 0.34 0.27 0.31 1.06 1.46 0.56 0.79 0.36 1.68 1.63 1.18 1.43 0.96 0.85 1.80 0.77 2.44 3.85 0.22 0.53 0.33 1.55 3.92 0.44 0.43 0.72 0.92 3.12 1.45 2.80 0.79 1.23 2.82 0.62 0.81 2.70 0.50 0.83 0.84 1.11 K alternative_donor CG2258,I_chrX_7993650_7995126,I_chrX_7994188_7995101 chrX - chrX_7990868_7990987 chrX_7990868_7990933 chrX_7990737_7990867;chrX_7990988_7991072 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA 100.00 100.00 NA 100.00 NA NA NA 100.00 100.00 100.00 NA NA NA NA NA NA NA NA NA NA N alternative_acceptor RpL39,I_chr2R_19949515_19949720 chr2R - chr2R_19949805_19949910 chr2R_19949825_19949910 chr2R_19949911_19950046;chr2R_19949721_19949804 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.47 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD I_chr2L_476332_525391,ush chr2L + chr2L_539247_539309 chr2L_539250_539309 chr2L_539310_539452;chr2L_537863_539246 99.66 98.73 98.91 97.52 100.00 100.00 100.00 99.22 98.88 100.00 100.00 100.00 100.00 100.00 100.00 98.28 98.55 100.00 98.97 99.66 98.65 99.15 99.59 99.47 100.00 98.77 100.00 100.00 100.00 99.34 100.00 100.00 100.00 100.00 100.00 99.34 99.52 100.00 100.00 99.55 99.39 99.39 98.46 99.50 100.00 98.78 100.00 100.00 100.00 99.53 100.00 100.00 99.33 98.63 99.22 100.00 98.08 99.14 K cassette CG8671,I_chr2L_21275807_21277205 chr2L + chr2L_21263124_21273323 chr2L_21263124_21263722;chr2L_21263787_21273323 chr2L_21263723_21263786 chr2L_21262988_21263123;chr2L_21273324_21273463 95.00 91.67 100.00 94.74 90.91 92.31 84.00 95.24 96.77 100.00 91.67 95.83 100.00 92.86 91.67 100.00 100.00 85.71 100.00 100.00 90.00 100.00 95.00 93.75 100.00 100.00 90.91 100.00 91.67 100.00 100.00 85.71 93.33 95.45 100.00 100.00 100.00 100.00 90.00 91.30 100.00 96.00 91.67 93.33 85.71 86.67 NA 86.96 88.00 100.00 100.00 100.00 100.00 NA 87.50 90.00 90.00 93.33 K alternative_donor CG4502,I_chr2L_7196721_7196787,I_chr2L_7196858_7204207 chr2L - chr2L_7196858_7203938;chr2L_7196858_7203942 chr2L_7196858_7203934 chr2L_7196788_7196857;chr2L_7203943_7204239 25.00 25.00 21.43 21.05 16.67 23.08 28.57 23.81 24.14 NA 14.29 27.78 16.67 26.67 25.00 25.00 20.00 36.36 28.57 26.32 22.22 NA 26.67 33.33 NA 33.33 11.11 NA 33.33 25.00 15.38 28.57 23.08 25.00 25.00 27.27 NA NA 37.50 7.14 20.00 17.39 28.57 25.00 NA 17.65 28.57 26.09 35.00 28.57 18.18 22.22 NA NA 15.79 33.33 NA 33.33 K intron_retention CG7843,I_chr2R_1972736_1972822 chr2R - chr2R_1968921_1969240 chr2R_1968920_1968921;chr2R_1969240_1969241 chr2R_1968863_1968920;chr2R_1969241_1969345 0.00 0.00 0.00 10.81 0.00 0.00 8.33 0.00 1.14 0.00 0.00 6.02 4.17 0.00 2.17 5.13 0.00 3.70 4.76 3.16 0.00 3.03 1.15 3.12 0.00 2.63 3.77 7.55 0.00 4.26 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 2.35 0.00 4.17 1.41 0.00 3.33 0.00 1.69 2.90 0.00 4.41 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 2.47 K intron_retention Ssb-c31a,CG8360 chr2L + chr2L_8211503_8211558 chr2L_8211502_8211503;chr2L_8211558_8211559 chr2L_8211377_8211502;chr2L_8211559_8211958 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.67 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 K alternative_donor Pax,RI_chr2L_19404683_19426205,RI_chr2L_19404823_19409403,I_chr2L_19419985_19423267,I_chr2L_19419985_19423278,I_chr2L_19419985_19423414,I_chr2L_19420081_19423267,I_chr2L_19420081_19423278 chr2L - chr2L_19420192_19423267;chr2L_19420192_19423414 chr2L_19420192_19423278 chr2L_19420186_19420191;chr2L_19423415_19423487 37.98 37.50 50.00 37.50 NA 25.00 45.45 28.57 20.00 NA NA 40.00 NA NA 33.33 38.46 NA NA 33.33 40.00 NA 40.00 30.00 40.00 NA NA NA 50.00 NA 41.67 28.57 NA 50.00 30.77 44.44 50.00 NA 0.00 NA 33.33 NA 42.86 NA 60.00 NA 50.00 16.67 37.50 30.00 NA 28.57 NA NA NA 33.33 40.00 NA 40.00 K jcn_only_AA CG6425 chr3R - chr3R_22542850_22542919 chr3R_22542861_22542919 chr3R_22542920_22542946;chr3R_22541838_22542849 98.48 100.00 100.00 97.83 100.00 96.67 96.67 97.73 96.61 NA 96.15 93.02 100.00 96.43 95.00 100.00 100.00 97.50 100.00 98.00 100.00 97.06 100.00 100.00 100.00 100.00 97.22 100.00 96.67 100.00 95.83 NA 100.00 100.00 100.00 100.00 97.73 96.43 100.00 93.62 NA 97.67 96.15 100.00 NA 100.00 97.14 NA 98.48 96.00 97.37 100.00 100.00 97.30 96.67 100.00 100.00 NA K jcn_only_AA Hph,I_chr3R_1092755_1092819 chr3R + chr3R_1092755_1092842 chr3R_1092755_1092819 chr3R_1092655_1092754;chr3R_1092843_1092919 0.00 1.65 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.83 0.00 0.00 0.00 2.03 0.00 0.32 0.00 0.92 0.81 0.00 0.00 0.76 1.10 7.14 0.79 0.87 0.00 0.00 0.00 0.56 0.00 1.33 0.00 0.00 0.00 0.00 0.74 0.38 1.15 0.75 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 K intron_retention CG6353 chr3R - chr3R_17488466_17488531 chr3R_17488465_17488466;chr3R_17488531_17488532 chr3R_17488441_17488465;chr3R_17488532_17488664 0.00 NA 7.41 11.76 0.00 0.00 5.88 3.23 7.69 12.50 0.00 0.00 0.00 0.00 0.00 3.23 NA 0.00 0.00 6.85 0.00 0.00 8.33 NA NA 12.50 3.70 10.00 10.81 0.00 0.00 8.33 0.00 5.71 NA 0.00 NA 0.00 7.41 0.00 6.67 4.76 NA 0.00 5.71 0.00 5.00 0.00 0.00 0.00 12.50 6.67 0.00 0.00 0.00 8.33 5.71 0.00 K alternative_acceptor I_chr3R_8822346_8822403,CG7518 chr3R + chr3R_8832937_8833246 chr3R_8832937_8833113 chr3R_8832068_8832936;chr3R_8833247_8833436 1.59 3.09 1.52 3.19 1.82 0.00 2.78 2.06 2.33 0.00 3.77 1.85 4.00 4.08 0.00 5.88 0.00 1.92 1.59 1.06 1.49 3.06 1.44 1.77 3.77 2.50 1.16 1.59 1.12 0.86 1.59 2.38 0.00 3.37 2.90 0.00 1.23 0.88 0.81 1.18 1.98 2.17 2.44 0.72 0.00 0.70 0.81 0.00 2.56 3.05 1.74 1.56 1.00 2.33 1.47 0.00 0.00 0.00 K jcn_only_AD CG6923 chr3R - chr3R_7574682_7575419 chr3R_7574682_7574963 chr3R_7574512_7574681;chr3R_7575420_7575455 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA 96.00 100.00 NA 100.00 97.06 NA NA NA 96.55 NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA 90.62 NA NA NA NA 95.65 93.94 NA 94.12 NA NA NA NA NA NA 95.45 NA 96.67 NA NA NA NA NA NA NA K intron_retention Trc8 chr3R - chr3R_25327211_25327424 chr3R_25327210_25327211;chr3R_25327424_25327425 chr3R_25326673_25327210;chr3R_25327425_25327995 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention CG32529 chrX + chrX_19795641_19795900 chrX_19795640_19795641;chrX_19795900_19795901 chrX_19795580_19795640;chrX_19795901_19798251 53.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 53.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG10103,noncoding_10997 chr3L - chr3L_6747594_6748172;chr3L_6747594_6748046;chr3L_6747594_6748519 chr3L_6747594_6747844;chr3L_6747908_6748519,chr3L_6747908_6748046,chr3L_6747908_6748172 chr3L_6747845_6747907 chr3L_6747493_6747593;chr3L_6748520_6749258 30.36 31.03 25.00 21.05 28.95 26.88 8.55 27.66 29.30 37.93 33.33 41.22 29.41 17.86 27.59 28.26 30.91 34.92 35.29 26.55 35.14 48.15 36.08 41.38 34.78 22.99 36.70 37.04 12.35 29.91 32.17 32.67 30.30 27.87 28.89 27.12 33.33 30.56 33.04 27.35 27.78 35.59 22.37 35.71 20.25 29.66 37.23 27.07 27.61 34.01 41.00 38.46 22.83 35.87 30.36 35.00 35.48 26.71 K jcn_only_AA CG10462 chr2L - chr2L_19734410_19734469;chr2L_19734413_19734469 chr2L_19734281_19734469 chr2L_19734470_19734941;chr2L_19733639_19734280 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1161,I_chr3R_1182079_1182146 chr3R + chr3R_1181851_1181905 chr3R_1181850_1181851;chr3R_1181905_1181906 chr3R_1181725_1181850;chr3R_1181906_1181931 100.00 100.00 97.06 100.00 100.00 100.00 97.67 100.00 98.59 100.00 100.00 100.00 97.50 100.00 100.00 100.00 100.00 97.96 100.00 99.12 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 96.30 100.00 97.62 100.00 100.00 100.00 100.00 95.45 100.00 100.00 98.11 100.00 100.00 100.00 K intron_retention Gdi chr2L - chr2L_9492546_9492627 chr2L_9492545_9492546;chr2L_9492627_9492628 chr2L_9491177_9492545;chr2L_9492628_9493103 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.67 0.00 0.00 0.39 0.00 0.96 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.23 0.19 0.22 0.00 0.00 0.36 0.00 0.45 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.14 0.00 0.00 0.45 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 K intron_retention CG10962,E_chrX_8871490_8871566,E_chrX_8871690_8873486 chrX - chrX_8867414_8867687 chrX_8867413_8867414;chrX_8867687_8867688 chrX_8866946_8867413;chrX_8867688_8868437 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 1.14 1.43 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.53 0.43 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.61 1.16 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7718 chr3R - chr3R_14570393_14570450 chr3R_14570392_14570393;chr3R_14570450_14570451 chr3R_14569781_14570392;chr3R_14570451_14571793 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 20.00 11.11 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention rho-7,noncoding_6143 chr2R - chr2R_7875007_7875506 chr2R_7875006_7875007;chr2R_7875506_7875507 chr2R_7874791_7875006;chr2R_7875507_7875801 2.13 5.56 0.00 15.62 0.00 0.00 3.92 6.90 2.50 0.00 6.25 5.56 5.41 5.71 2.13 0.00 0.00 5.26 0.00 3.74 0.00 0.00 0.00 3.03 2.13 6.67 3.57 0.00 4.76 1.59 1.54 0.00 2.25 7.41 0.00 5.56 0.00 0.00 0.00 1.41 4.76 4.35 0.00 0.00 2.90 7.25 0.00 3.57 5.71 0.00 2.82 0.00 2.00 3.64 4.26 0.00 3.90 1.19 K jcn_only_AD I_chr3R_17177101_17200781,mod(mdg4) chr3R - chr3R_17182691_17200781 chr3R_17182691_17182836 chr3R_17182533_17182690 19.14 NA NA NA NA NA NA NA 13.64 NA NA 25.00 NA NA NA NA NA NA NA 4.35 NA NA NA NA NA NA NA NA NA NA NA 9.52 NA 16.00 NA NA NA NA NA NA NA 19.05 NA NA 28.00 19.23 NA 15.62 20.00 NA NA NA NA NA 21.74 NA NA 22.73 K intron_retention Tsp42El chr2R + chr2R_2933519_2934781 chr2R_2933518_2933519;chr2R_2934781_2934782 chr2R_2933211_2933518;chr2R_2934782_2934940 0.00 0.00 0.00 2.27 0.00 0.00 0.00 3.85 4.17 NA NA 0.00 0.00 4.76 3.85 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA 4.17 0.00 0.00 NA NA NA NA 3.12 NA NA NA NA NA 0.00 NA NA NA K intron_retention Chit chr2R + chr2R_12580429_12580490 chr2R_12580428_12580429;chr2R_12580490_12580491 chr2R_12579853_12580428;chr2R_12580491_12581291 0.05 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.06 0.15 0.00 0.10 0.03 0.05 0.00 0.05 0.00 0.00 0.00 0.05 0.00 0.00 0.08 0.10 0.00 0.04 0.12 0.00 0.08 0.08 0.00 0.07 0.00 0.00 0.18 0.00 0.06 0.00 0.09 0.11 0.12 0.00 0.05 0.10 0.06 0.00 0.05 0.07 0.02 0.18 0.05 0.09 0.08 0.11 0.04 0.00 0.06 0.06 K intron_retention CG4199,I_chrX_1962457_1964222 chrX - chrX_1965614_1967409 chrX_1965613_1965614;chrX_1967409_1967410 chrX_1965393_1965613;chrX_1967410_1967460 100.00 NA 90.00 100.00 NA NA 85.71 100.00 100.00 NA NA 92.31 81.82 NA 100.00 NA NA NA 100.00 92.86 NA 88.00 93.75 100.00 NA 100.00 100.00 88.89 100.00 NA 84.62 100.00 100.00 100.00 NA 100.00 91.67 100.00 87.50 88.89 90.00 94.44 NA 90.00 NA 100.00 100.00 100.00 92.86 100.00 100.00 90.00 92.86 100.00 100.00 90.00 100.00 90.91 K intron_retention CG6859 chr3L + chr3L_15137636_15137768 chr3L_15137635_15137636;chr3L_15137768_15137769 chr3L_15137556_15137635;chr3L_15137769_15139146 0.00 0.00 0.00 0.00 3.45 2.22 0.00 0.00 0.00 2.50 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 5.41 4.08 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 K intron_retention sec24,RI_chr2R_5764938_5764997,I_chr2R_5768722_5769689 chr2R - chr2R_5764945_5764997 chr2R_5764944_5764945;chr2R_5764997_5764998 chr2R_5764806_5764944;chr2R_5764998_5765095 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 4.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 1.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor osa,I_chr3R_13542657_13542834,I_chr3R_13542657_13543500,I_chr3R_13542657_13543662,I_chr3R_13542657_13543668,I_chr3R_13543730_13543786 chr3R - chr3R_13542657_13543500;chr3R_13542657_13543662;chr3R_13542657_13542834;chr3R_13542657_13543668;chr3R_13542657_13543677 chr3R_13542657_13543968 chr3R_13542557_13542656;chr3R_13543969_13544017 14.81 18.64 12.07 21.50 13.73 16.13 17.17 15.45 15.23 22.64 7.27 18.94 24.29 14.49 13.24 10.89 23.61 16.36 15.38 16.78 20.34 14.44 21.93 16.67 18.87 19.30 24.69 14.89 12.24 19.32 10.17 5.26 5.43 13.01 7.55 19.74 24.18 13.21 22.08 14.39 12.50 13.82 10.00 14.86 8.00 7.50 10.00 8.79 16.90 14.29 18.09 12.96 6.45 41.18 12.35 14.81 10.53 10.53 K alternative_donor eIF4G,I_chr4_948813_950447 chr4 - chr4_950758_951137 chr4_950758_950907 chr4_950706_950757;chr4_951138_951213 3.63 0.00 4.76 4.88 0.00 4.17 5.45 6.49 4.88 NA 0.00 4.69 6.25 0.00 0.00 2.47 0.00 4.00 4.35 5.88 0.00 0.00 0.00 3.70 0.00 7.14 0.00 14.29 NA NA 4.76 NA NA 3.45 4.76 4.00 NA NA NA 3.57 NA 1.59 2.94 3.85 NA NA NA NA 4.62 NA 2.70 0.00 NA NA 0.00 NA NA NA K alternative_acceptor CG9934,I_chr2L_13018178_13019071 chr2L - chr2L_13018175_13018789 chr2L_13018178_13018789 chr2L_13018790_13019118;chr2L_13018078_13018174 50.00 59.09 40.00 54.29 64.29 58.82 47.06 52.00 59.52 53.33 40.00 59.38 35.29 61.11 40.91 47.62 43.75 50.00 41.38 56.41 50.00 59.09 44.12 63.16 50.00 38.89 70.00 66.67 50.00 50.00 41.67 80.00 55.56 64.00 35.29 62.50 57.89 57.14 56.25 50.00 40.00 50.00 42.11 38.10 60.00 47.06 53.85 45.16 41.67 80.00 54.55 40.00 NA NA 32.00 46.67 54.55 47.06 K intron_retention Mcm5 chr3R + chr3R_6614539_6614592 chr3R_6614538_6614539;chr3R_6614592_6614593 chr3R_6614244_6614538;chr3R_6614593_6615703 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 5.56 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Spred,I_chr2R_10655876_10656041,I_chr2R_10655876_10656193,I_chr2R_10655876_10656868 chr2R - chr2R_10655876_10656848;chr2R_10655876_10656878;chr2R_10655876_10656782;chr2R_10655876_10656526 chr2R_10655876_10656871 chr2R_10655776_10655875;chr2R_10656879_10656886 0.00 0.00 7.14 2.94 0.00 7.69 0.00 3.85 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 4.76 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG15908_CG9410,CG15908 chr2R + chr2R_2555762_2555813 chr2R_2555761_2555762;chr2R_2555813_2555814 chr2R_2555685_2555761;chr2R_2555814_2556173 0.00 0.00 0.00 0.00 0.00 NA 2.13 0.00 0.00 0.00 0.00 4.88 0.00 0.00 4.35 1.92 0.00 0.00 2.94 4.62 0.00 0.00 NA 0.00 7.69 3.33 0.00 0.00 13.04 NA 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 3.92 4.35 3.39 0.00 0.00 0.00 0.00 4.76 0.00 5.13 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 1.75 K intron_retention Reps,I_chr2L_11105525_11105656 chr2L - chr2L_11103170_11103322 chr2L_11103169_11103170;chr2L_11103322_11103323 chr2L_11100956_11103169;chr2L_11103323_11103363 15.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG6179,RI_chrX_18274964_18275006 chrX + chrX_18274964_18275023 chrX_18274963_18274964;chrX_18275023_18275024 chrX_18274864_18274963;chrX_18275024_18275106 0.00 2.86 0.00 9.68 0.00 0.00 0.00 8.33 0.00 0.00 0.00 4.17 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 3.57 0.00 NA 0.00 0.00 21.21 0.00 4.55 7.41 0.00 0.00 0.00 2.78 0.00 0.00 0.00 2.70 0.00 3.92 0.00 0.00 5.00 2.44 5.00 0.00 2.00 0.00 2.17 0.00 1.82 4.17 0.00 2.63 1.25 0.00 K jcn_only_AA CG4980 chr3R - chr3R_23747816_23747920 chr3R_23747854_23747920 chr3R_23747921_23748082;chr3R_23746995_23747815 100.00 98.41 100.00 100.00 100.00 100.00 100.00 100.00 98.67 98.31 NA 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA 98.80 100.00 98.00 98.31 NA 100.00 65.38 100.00 100.00 96.15 100.00 100.00 100.00 98.55 100.00 98.68 100.00 100.00 100.00 99.17 98.75 100.00 97.22 99.35 100.00 98.88 99.40 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Alas chr2R + chr2R_19853651_19853794 chr2R_19853650_19853651;chr2R_19853794_19853795 chr2R_19852297_19853650;chr2R_19853795_19854602 0.00 0.00 0.00 0.00 0.00 0.00 3.57 1.72 1.12 0.00 0.00 2.78 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.11 0.00 0.00 3.12 0.00 3.23 0.00 1.47 0.00 2.60 1.41 0.00 2.60 3.08 0.00 1.41 0.00 0.00 2.44 0.00 2.25 2.17 0.00 1.69 2.52 0.00 0.00 2.70 0.95 0.00 3.23 0.00 0.00 0.00 0.00 1.47 0.00 K alternative_acceptor Su(var)2-10,RI_chr2R_5006333_5006392 chr2R + chr2R_5003957_5004832 chr2R_5003957_5004682 chr2R_5003888_5003956;chr2R_5004833_5005357 100.00 100.00 98.46 98.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.30 100.00 97.40 99.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.39 100.00 99.04 98.63 98.97 100.00 100.00 100.00 100.00 100.00 100.00 98.70 100.00 100.00 100.00 100.00 98.73 100.00 100.00 100.00 100.00 98.04 100.00 100.00 K jcn_only_AA CG15012 chr3L - chr3L_4291619_4291686 chr3L_4291624_4291686 chr3L_4291687_4291816;chr3L_4291609_4291618 99.50 100.00 99.60 100.00 99.51 98.75 99.09 98.54 99.54 100.00 99.49 99.02 100.00 99.48 98.13 98.89 99.40 100.00 99.57 98.85 100.00 99.61 99.60 99.16 100.00 99.58 100.00 100.00 100.00 97.39 99.01 100.00 99.23 99.32 100.00 100.00 99.44 98.54 99.50 100.00 99.37 99.26 99.36 99.44 99.26 98.17 99.64 100.00 99.73 98.67 98.95 98.89 99.37 99.59 100.00 99.61 98.82 100.00 K intron_retention CG3829,I_chr2R_20875497_20875710,I_chr2R_20876262_20876320,I_chr2R_20876262_20876323 chr2R + chr2R_20876146_20876202 chr2R_20876145_20876146;chr2R_20876202_20876203 chr2R_20876054_20876145;chr2R_20876203_20876261 0.00 2.70 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2813977;chr2R_2814097_2814174;chr2R_2814327_2814894;chr2R_2815654_2816013;chr2R_2816342_2816577;chr2R_2816779_2817459;chr2R_2817604_2817753 chr2R_2813978_2814096;chr2R_2814175_2814326;chr2R_2814895_2815653;chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817460_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_560576_560883;chr3R_560576_560886 chr3R_560576_560847 chr3R_560204_560575;chr3R_560887_561068 63.52 63.03 72.73 63.59 62.65 62.99 62.76 61.70 62.41 63.77 78.57 62.91 69.16 80.00 61.59 61.17 73.27 63.55 62.33 63.01 58.65 75.27 63.48 63.16 63.64 63.51 62.44 63.83 74.76 61.46 63.07 63.74 63.81 73.18 63.92 NA 63.28 74.04 53.33 75.54 73.95 62.84 71.70 74.62 63.54 73.10 62.10 62.81 73.06 63.49 62.23 62.00 63.83 73.40 62.35 63.57 62.80 84.67 K intron_retention Tsp42Ee,RI_chr2R_2904593_2904783 chr2R + chr2R_2904881_2904939 chr2R_2904880_2904881;chr2R_2904939_2904940 chr2R_2904784_2904880;chr2R_2904940_2905131 0.09 0.40 0.00 0.09 0.00 0.00 0.00 0.19 0.06 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.16 0.00 0.14 0.11 0.00 0.63 0.26 0.24 0.24 0.09 0.75 0.81 1.56 0.28 0.00 0.00 0.00 0.11 0.12 0.44 0.00 0.09 0.21 0.09 0.10 0.12 0.00 0.08 0.15 0.00 0.00 0.00 0.13 0.30 0.25 0.00 0.10 0.20 0.00 0.18 0.00 0.11 K cassette slgA,I_chrX_21247694_21251677,I_chrX_21253735_21253820 chrX + chrX_21247694_21251677;chrX_21250737_21251677 chrX_21250737_21250999,chrX_21247694_21250999;chrX_21251122_21251677 chrX_21251000_21251121 chrX_21247594_21247693;chrX_21251678_21251759 31.58 33.33 26.32 28.57 54.55 36.36 12.50 27.78 28.57 NA NA 52.00 NA 23.08 23.08 21.05 69.23 46.15 13.33 31.58 30.00 57.14 37.04 22.73 41.67 50.00 35.71 NA NA 33.33 31.82 NA NA 19.05 40.00 NA 42.31 31.82 36.00 33.33 NA 34.62 23.08 47.06 NA 25.00 21.43 15.79 26.09 23.08 27.27 21.74 NA NA 37.50 25.00 NA NA K alternative_acceptor Plc21C,I_chr2L_343730_344038 chr2L + chr2L_344490_344575 chr2L_344490_344554 chr2L_344042_344489;chr2L_344576_344947 18.18 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 18.18 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor Lam chr2L + chr2L_5542656_5543324;chr2L_5543273_5543324;chr2L_5542661_5543324 chr2L_5542864_5543324 chr2L_5543325_5543794;chr2L_5542527_5542655 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 K intron_retention CG31997,I_chr4_175592_176390 chr4 - chr4_175592_175652 chr4_175591_175592;chr4_175652_175653 chr4_175514_175591;chr4_175653_175721 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 K intron_retention Snr1,I_chr3R_1297469_1297546 chr3R + chr3R_1297053_1297546 chr3R_1297052_1297053;chr3R_1297546_1297547 chr3R_1296531_1297052;chr3R_1297547_1297646 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.21 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.79 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Ddip2,I_chr3L_252776_253313 chr3L - chr3L_252945_253313 chr3L_252944_252945;chr3L_253313_253314 chr3L_252835_252944;chr3L_253314_253413 29.41 36.84 32.14 39.13 26.32 20.00 40.91 24.14 28.57 NA 30.77 41.67 40.00 30.77 27.27 20.00 29.41 28.57 28.57 22.22 21.74 47.83 28.57 26.32 50.00 29.41 33.33 58.82 60.00 13.64 16.67 41.67 26.09 26.92 38.46 36.00 17.86 26.32 39.13 26.47 30.77 34.48 36.36 31.03 NA 26.32 35.00 14.29 31.03 26.09 41.67 21.43 14.29 41.67 35.00 19.05 36.36 17.65 K intron_retention kuz,E_chr2L_13550294_13551106,CE_chr2L_13558833_13594255,F_chr2L_13635998_13637287,RI_chr2L_13636519_13636577,I_chr2L_13636762_13637287 chr2L + chr2L_13636002_13637287 chr2L_13636001_13636002;chr2L_13637287_13637288 chr2L_13635649_13636001;chr2L_13637288_13637387 32.65 21.33 32.65 57.75 26.67 27.12 51.72 18.87 26.42 35.71 58.54 70.09 20.93 36.17 41.51 46.88 27.50 50.00 33.33 34.75 46.15 36.64 20.00 26.67 39.71 56.00 34.67 33.33 36.99 32.50 34.09 30.95 38.55 27.55 28.57 42.25 33.09 21.79 20.51 34.83 29.79 30.34 26.19 23.91 34.55 34.04 15.22 36.76 30.23 23.73 25.00 16.33 20.97 18.75 40.00 25.00 16.67 34.92 K cassette CG4822,I_chr2L_120081_120199,I_chr2L_120266_120420,I_chr2L_125267_128799,RI_chr2L_126228_126309 chr2L - chr2L_119236_119430 chr2L_119236_119287;chr2L_119376_119430 chr2L_119288_119375 chr2L_119227_119235;chr2L_119431_119554 94.74 97.83 92.86 98.57 93.02 88.57 98.25 94.81 97.75 94.44 96.43 93.90 94.12 92.00 90.00 92.50 97.62 90.00 98.11 92.68 90.00 98.08 88.89 98.44 90.24 80.56 96.30 89.29 95.00 91.49 91.11 100.00 100.00 93.15 94.87 90.00 93.55 98.11 98.31 96.10 96.00 94.87 93.94 96.97 100.00 92.68 96.00 93.55 93.98 98.00 94.52 96.55 94.12 94.74 92.54 98.08 97.73 100.00 K cassette CG34347 chr3R + chr3R_27186956_27195957;chr3R_27188081_27195957 chr3R_27188081_27192564,chr3R_27186956_27192564;chr3R_27193245_27195957 chr3R_27192565_27193244 chr3R_27186940_27186955;chr3R_27195958_27195975 69.05 60.00 NA 66.67 NA NA NA NA 75.00 NA NA 100.00 NA NA NA NA NA NA NA 60.00 NA 75.00 75.00 66.67 NA NA 60.00 66.67 60.00 NA NA 66.67 100.00 100.00 66.67 100.00 75.00 NA 80.00 75.00 60.00 75.00 NA 80.00 75.00 NA 100.00 71.43 50.00 NA 40.00 NA 66.67 NA NA NA 40.00 66.67 K alternative_donor tws,I_chr3R_5960899_5960978,CG6241 chr3R - chr3R_5959310_5960163;chr3R_5959310_5960101;chr3R_5959310_5960041;chr3R_5959310_5960049;chr3R_5959310_5960182;chr3R_5959310_5960026;chr3R_5959310_5960158;chr3R_5959310_5959679 chr3R_5959310_5959789 chr3R_5958937_5959309;chr3R_5960183_5960224 0.00 0.00 0.00 8.00 0.00 10.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 7.14 6.67 10.00 0.00 5.88 0.00 25.00 12.50 0.00 25.00 0.00 11.11 20.00 25.00 11.11 11.11 0.00 0.00 8.33 0.00 0.00 0.00 25.00 0.00 16.67 11.11 0.00 0.00 0.00 0.00 33.33 0.00 0.00 19.05 6.25 0.00 0.00 0.00 16.67 0.00 6.25 0.00 0.00 7.69 N jcn_only_AD CG17255,I_chrX_10366177_10366615,RI_chrX_10366177_10367270 chrX - chrX_10366177_10367360;chrX_10366177_10367201;chrX_10366177_10367458;chrX_10366177_10367270;chrX_10366177_10366615 chrX_10366177_10368085 chrX_10366077_10366176;chrX_10368086_10368118 69.00 65.74 76.07 65.05 65.88 74.23 67.35 66.32 59.68 76.92 78.57 68.33 66.07 73.60 70.51 58.38 67.23 72.34 67.97 67.68 68.54 82.02 58.73 70.50 69.01 75.91 70.34 70.97 86.62 73.08 73.08 78.26 83.07 63.68 63.87 74.49 59.12 73.03 69.00 75.90 83.33 66.12 68.00 62.02 83.75 87.61 68.52 87.20 67.76 77.46 62.50 52.11 65.57 62.50 70.66 66.67 66.07 86.42 K intron_retention CG7720 chr3R - chr3R_14587729_14594381 chr3R_14587728_14587729;chr3R_14594381_14594382 chr3R_14587702_14587728;chr3R_14594382_14594529 12.50 NA NA NA NA NA NA 14.29 21.43 NA NA 12.50 NA NA 15.38 NA NA NA NA 20.00 NA 11.54 21.43 11.76 NA NA 12.50 NA NA 7.69 40.00 NA NA NA NA 13.33 13.04 NA 10.53 10.00 NA 35.71 NA 2.38 NA 10.53 18.75 21.43 NA 6.67 10.00 NA 12.50 NA NA 11.11 NA 0.00 K jcn_only_AD RpL27,I_chr3R_21510239_21510298,RI_chr3R_21510239_21510441,I_chr3R_21510239_21510464,I_chr3R_21510239_21510656,I_chr3R_21510239_21510726 chr3R - chr3R_21510239_21510656;chr3R_21510239_21510739;chr3R_21510239_21510680;chr3R_21510239_21510298;chr3R_21510239_21510746 chr3R_21510239_21510464 chr3R_21510139_21510238;chr3R_21510747_21510756 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 2.22 0.00 1.05 0.00 2.50 2.17 0.00 2.44 0.00 0.00 0.00 1.56 1.85 1.90 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.62 1.41 4.00 0.00 0.00 3.64 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.55 K alternative_acceptor akirin,I_chr3L_7363173_7364806,I_chr3L_7363177_7364806,I_chr3L_7363177_7364831,I_chr3L_7363211_7364831,I_chr3L_7363731_7364806,I_chr3L_7364126_7364806,RI_chr3L_7364737_7364806 chr3L + chr3L_7363169_7364831 chr3L_7363169_7364806 chr3L_7363111_7363168;chr3L_7364832_7364906 82.05 82.09 91.23 95.65 81.82 90.74 90.62 89.63 82.00 76.92 93.10 86.82 82.05 77.14 87.84 78.38 85.25 84.21 82.35 88.89 84.21 74.58 74.77 81.08 84.44 91.43 85.71 78.12 92.31 66.22 76.71 73.53 42.67 86.96 82.00 88.46 75.41 80.70 79.66 74.19 86.84 84.96 88.14 85.71 85.71 79.71 83.33 80.65 79.29 65.85 82.93 80.39 75.61 81.13 86.67 78.57 75.44 77.36 K alternative_donor drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389597_9390195;chr2R_9389597_9390151;chr2R_9389597_9389940;chr2R_9389597_9390293;chr2R_9389597_9389751;chr2R_9389597_9390264;chr2R_9389597_9389753;chr2R_9389597_9389757 chr2R_9389597_9389907 chr2R_9389497_9389596;chr2R_9390294_9390295 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 3.70 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.74 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_donor CG2003 chr3R + chr3R_27815189_27815312;chr3R_27815253_27815312 chr3R_27815249_27815312 chr3R_27815313_27816636;chr3R_27815109_27815188 93.33 90.38 97.73 88.00 89.66 93.48 93.75 95.59 88.89 93.33 95.24 85.53 89.74 97.44 96.08 92.00 89.19 94.74 96.43 94.00 95.65 100.00 84.75 94.83 96.88 93.55 93.18 86.11 100.00 88.46 68.42 83.33 77.19 95.00 97.06 87.50 83.33 85.42 95.08 82.43 96.55 92.13 96.88 97.56 96.15 82.26 95.12 83.61 95.35 90.91 91.04 88.57 92.86 94.87 94.12 85.19 94.67 90.59 K alternative_donor CtBP chr3R + chr3R_8847030_8847141 chr3R_8847039_8847141 chr3R_8847142_8847364;chr3R_8846898_8847029 20.99 18.52 21.18 21.13 23.19 17.20 20.99 23.08 20.00 15.62 14.44 18.13 16.28 23.46 21.36 25.77 20.83 21.74 20.99 23.75 17.81 18.07 28.05 18.29 18.06 21.21 18.31 17.48 19.49 18.82 22.22 18.33 17.46 22.76 27.85 17.89 20.00 19.40 20.56 23.16 21.05 23.03 19.48 16.90 20.45 26.42 22.22 22.90 21.35 25.00 25.68 22.95 18.33 22.54 18.10 21.13 22.97 20.48 K intron_retention CG7956 chr3R + chr3R_17352625_17352984 chr3R_17352624_17352625;chr3R_17352984_17352985 chr3R_17351551_17352624;chr3R_17352985_17353123 90.70 89.74 84.78 98.08 80.00 88.89 95.40 98.41 92.78 76.47 94.74 93.55 95.83 93.62 90.70 96.10 94.59 81.58 92.00 97.06 90.91 85.19 89.77 90.28 97.06 93.75 91.94 97.22 76.19 78.72 86.81 97.22 82.14 93.59 93.62 78.05 80.49 88.24 87.76 82.46 83.05 90.12 96.55 88.89 81.58 88.12 85.96 72.46 94.19 90.80 93.62 88.24 77.42 97.56 97.14 94.87 94.12 79.31 K jcn_only_AD SAK chr3L - chr3L_21508757_21508877 chr3L_21508757_21508815 chr3L_21508661_21508756;chr3L_21508878_21508916 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention CG7987,RI_chr3R_10400799_10401492 chr3R - chr3R_10400608_10401492 chr3R_10400607_10400608;chr3R_10401492_10401493 chr3R_10400270_10400607;chr3R_10401493_10401559 53.85 40.00 39.29 42.86 55.00 50.00 53.66 44.12 57.14 76.92 50.00 43.64 93.75 55.17 50.00 38.89 60.00 48.15 61.54 50.72 42.11 45.00 54.24 47.62 63.33 69.57 51.22 54.76 57.69 52.94 35.59 64.00 63.64 51.11 55.56 62.86 66.67 55.88 39.66 69.70 77.78 54.00 50.00 52.17 52.00 63.33 53.85 56.76 47.62 73.08 57.89 62.50 63.64 53.85 38.89 50.00 48.15 57.69 K intron_retention N chrX + chrX_3063661_3063754 chrX_3063660_3063661;chrX_3063754_3063755 chrX_3057512_3063660;chrX_3063755_3064064 0.00 NA NA 0.00 NA NA 0.00 8.33 3.57 NA 0.00 0.00 NA NA NA NA NA 0.00 NA 0.00 NA 6.98 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA 6.67 0.00 NA 0.00 0.00 0.00 0.00 NA NA 3.70 NA NA NA 0.00 NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K alternative_donor RpL36,RI_chrX_522912_523358,I_chrX_522932_523360,I_chrX_522949_523360 chrX - chrX_522912_523360;chrX_522912_523414;chrX_522912_523194;chrX_522912_523323;chrX_522912_523389 chrX_522912_523215 chrX_522849_522911;chrX_523415_523436 0.00 0.00 0.00 0.36 1.20 1.06 0.61 0.38 0.00 0.00 1.45 0.48 1.23 1.25 0.00 0.00 0.00 1.32 1.23 0.00 0.00 0.00 0.00 0.00 1.11 1.82 0.92 0.91 0.42 0.00 0.00 0.00 0.00 0.41 1.39 1.04 0.00 0.00 0.00 0.00 0.48 0.30 0.00 0.00 0.00 0.47 0.00 0.39 0.00 0.00 1.03 0.00 0.40 0.00 0.00 0.00 0.00 0.17 K alternative_acceptor CG30187,F_chr2R_18804786_18805198,F_chr2R_18805721_18805778,I_chr2R_18820842_18820922 chr2R - chr2R_18805073_18805156 chr2R_18805106_18805156 chr2R_18805157_18805720;chr2R_18805057_18805072 100.00 100.00 100.00 100.00 100.00 95.24 97.62 97.73 98.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 97.30 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 K jcn_only_AD eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20341925_20342041;chr3L_20341636_20342041;chr3L_20341509_20342041;chr3L_20341865_20342041;chr3L_20341486_20342041;chr3L_20341522_20342041;chr3L_20341751_20342041;chr3L_20341530_20342041;chr3L_20341629_20342041;chr3L_20341598_20342041 chr3L_20341759_20342041 chr3L_20342042_20342306;chr3L_20341482_20341485 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG6689,RI_chr3R_7044164_7044221 chr3R - chr3R_7043759_7043827 chr3R_7043758_7043759;chr3R_7043827_7043828 chr3R_7043620_7043758;chr3R_7043828_7044163 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA 8.33 0.00 0.00 0.00 0.00 3.23 NA 0.00 NA 0.00 0.00 0.00 4.35 0.00 NA 0.00 0.00 0.00 0.00 4.17 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD tho2 chr2L - chr2L_2138159_2139629 chr2L_2138159_2138345 chr2L_2137984_2138158;chr2L_2139630_2139673 27.54 12.70 16.33 19.54 13.33 11.11 30.43 11.63 21.43 56.00 31.15 13.39 36.59 15.91 11.48 61.90 10.00 12.86 15.09 23.08 30.36 18.97 37.50 33.90 33.33 23.91 30.12 35.00 58.18 34.85 20.97 27.54 42.39 22.47 37.50 55.74 30.56 26.42 22.78 38.46 36.54 14.96 17.95 25.45 29.17 51.39 12.66 30.30 17.65 39.13 23.19 33.33 41.94 18.75 17.19 34.33 35.53 38.54 K alternative_acceptor mRpS10,CG34316 chr3R + chr3R_11055463_11055522 chr3R_11055463_11055508 chr3R_11055424_11055462;chr3R_11055523_11055749 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K alternative_donor RpL29,I_chr2R_17184688_17191389 chr2R + chr2R_17181380_17181558;chr2R_17181295_17181558 chr2R_17181384_17181558 chr2R_17181559_17181664;chr2R_17181294_17181294 1.18 1.20 0.99 0.83 1.10 1.26 0.82 0.78 0.90 1.45 0.95 1.09 1.43 0.86 0.89 1.07 1.00 1.22 1.13 1.13 0.96 0.00 1.99 1.51 1.73 0.84 4.55 1.29 1.52 1.23 1.28 1.75 0.87 1.07 1.52 1.32 1.88 1.71 2.87 0.91 0.72 0.82 0.92 1.53 1.19 1.67 1.61 1.40 0.86 1.61 0.83 1.68 1.18 4.00 0.92 2.34 1.01 0.89 K intron_retention CG3570 chr2R + chr2R_20491397_20491451 chr2R_20491396_20491397;chr2R_20491451_20491452 chr2R_20491135_20491396;chr2R_20491452_20492194 96.88 100.00 97.67 96.97 97.14 97.67 97.67 100.00 98.67 97.22 96.88 97.26 95.65 96.43 97.62 97.06 100.00 96.97 100.00 97.87 95.83 95.00 96.77 92.54 96.88 100.00 97.96 98.36 87.50 86.05 91.67 97.67 94.52 98.21 94.87 97.78 92.86 92.31 98.53 90.59 100.00 98.84 100.00 96.67 88.71 90.91 91.38 95.74 98.08 89.80 93.85 95.56 98.41 94.55 95.45 95.74 96.23 93.75 K intron_retention Sin3A,I_chr2R_8465791_8466633,I_chr2R_8473578_8480185,RI_chr2R_8479951_8480233 chr2R - chr2R_8465791_8466633 chr2R_8465790_8465791;chr2R_8466633_8466634 chr2R_8465691_8465790;chr2R_8466634_8466733 86.11 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 73.33 NA NA NA NA NA NA NA 93.33 NA NA NA NA 81.82 NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA NA NA NA N cassette CG3563,R_chr3R_10568322_10613785,I_chr3R_10615218_10615284,F_chr3R_10620137_10620250 chr3R + chr3R_10568314_10613778;chr3R_10575996_10613778 chr3R_10568314_10589932,chr3R_10575996_10589932;chr3R_10590015_10613778 chr3R_10589933_10590014 chr3R_10568222_10568313;chr3R_10613779_10614341 0.00 0.00 0.00 1.92 0.00 0.00 3.12 2.33 4.11 0.00 NA 1.89 0.00 0.00 0.00 9.76 0.00 0.00 10.71 8.11 0.00 5.56 0.00 0.00 0.00 0.00 0.00 47.22 14.29 2.94 0.00 NA 0.00 2.70 0.00 0.00 0.00 0.00 0.00 2.04 NA 9.80 0.00 0.00 NA 0.00 0.00 0.00 7.27 NA 0.00 0.00 NA NA 0.00 0.00 NA NA K intron_retention Rab10,I_chrX_20122832_20123581 chrX + chrX_20123672_20124139 chrX_20123671_20123672;chrX_20124139_20124140 chrX_20123582_20123671;chrX_20124140_20125284 0.70 0.76 1.47 5.16 0.00 0.00 2.65 1.65 1.49 0.00 9.18 2.84 0.00 0.89 0.00 1.17 2.04 0.00 0.86 0.93 3.57 2.73 0.00 0.00 0.00 0.66 1.33 1.68 4.26 0.00 0.86 0.00 0.69 2.56 0.96 2.05 1.04 0.70 1.00 0.25 0.00 1.43 2.00 0.55 0.00 0.00 0.00 0.00 0.76 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.64 0.00 K jcn_only_AA CG10321,I_chr2R_17522487_17522896 chr2R + chr2R_17522487_17522896 chr2R_17522487_17522885 chr2R_17522387_17522486;chr2R_17522897_17522996 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 94.29 97.73 100.00 100.00 100.00 100.00 NA 100.00 100.00 97.67 100.00 96.67 97.56 95.00 100.00 94.29 96.43 100.00 97.78 97.56 NA 100.00 98.57 100.00 100.00 97.44 100.00 100.00 NA 100.00 100.00 95.24 100.00 96.00 100.00 100.00 100.00 100.00 95.83 100.00 96.88 97.22 100.00 NA K cassette CG7139,I_chr3L_22062296_22063867,I_chr3L_22063306_22063867 chr3L - chr3L_22062296_22063867 chr3L_22062296_22062475;chr3L_22063263_22063867 chr3L_22062476_22063262 chr3L_22062196_22062295;chr3L_22063868_22063967 100.00 100.00 97.44 98.11 100.00 100.00 100.00 100.00 98.61 100.00 100.00 100.00 96.97 100.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 94.55 98.28 98.04 97.14 100.00 98.08 100.00 97.78 100.00 100.00 97.14 100.00 98.18 100.00 97.67 100.00 100.00 98.21 96.25 93.33 98.51 100.00 97.83 97.62 100.00 100.00 98.57 98.51 100.00 100.00 100.00 100.00 100.00 97.73 100.00 96.97 100.00 K jcn_only_AD Lerp chr3R - chr3R_22688433_22688824;chr3R_22688433_22688772;chr3R_22688433_22688494 chr3R_22688433_22688796 chr3R_22688359_22688432;chr3R_22688825_22688828 23.81 NA NA 23.81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention bip2,RI_chr4_481674_487126,RI_chr4_483144_483680,RI_chr4_486609_487126 chr4 - chr4_481283_481339 chr4_481282_481283;chr4_481339_481340 chr4_481200_481282;chr4_481340_481477 6.06 0.00 8.33 28.26 9.52 10.71 11.11 14.29 17.50 7.69 3.85 10.00 20.00 14.29 9.09 6.25 3.85 NA 6.45 7.02 NA 8.00 0.00 0.00 4.76 6.25 0.00 NA 0.00 0.00 5.00 0.00 0.00 9.09 0.00 6.25 0.00 0.00 0.00 0.00 4.55 11.54 11.11 0.00 14.29 10.00 0.00 5.88 4.55 5.26 10.00 0.00 8.33 0.00 9.76 0.00 2.78 13.46 K jcn_only_AA gw,I_chr4_679135_681671 chr4 - chr4_673460_673526 chr4_673469_673526 chr4_673527_673677;chr4_673272_673459 60.85 56.63 65.71 62.39 61.74 62.41 60.54 56.45 58.33 57.81 55.66 56.86 55.36 57.32 65.75 62.60 63.74 65.35 60.29 61.95 58.51 75.00 67.36 64.66 60.53 58.94 63.98 58.75 63.27 62.62 58.47 65.17 66.00 60.91 60.38 65.32 66.41 60.50 60.85 55.74 52.43 64.41 58.44 68.25 56.38 62.69 59.48 62.04 57.35 60.14 60.19 59.57 63.55 67.92 62.32 60.48 65.98 49.07 K intron_retention CG30499,I_chr2R_3452363_3452552 chr2R - chr2R_3452746_3452803 chr2R_3452745_3452746;chr2R_3452803_3452804 chr2R_3452563_3452745;chr2R_3452804_3453251 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG16896,CG30423 chr2R - chr2R_20761824_20761882 chr2R_20761823_20761824;chr2R_20761882_20761883 chr2R_20761710_20761823;chr2R_20761883_20762420 7.14 NA 0.00 8.33 NA NA 8.00 9.09 6.25 NA 13.33 7.14 NA 6.67 0.00 0.00 NA 0.00 4.55 12.12 NA 40.00 13.04 13.04 NA 12.50 19.05 26.32 27.27 NA 9.09 0.00 15.38 3.45 11.11 12.50 22.22 13.33 4.76 0.00 NA 7.41 NA 4.76 NA 4.76 NA 0.00 6.67 7.14 0.00 0.00 NA 7.14 0.00 0.00 NA 0.00 K cassette MTA1-like chr3R - chr3R_1469500_1472775 chr3R_1469500_1469884;chr3R_1469993_1472775 chr3R_1469885_1469992 chr3R_1469171_1469499;chr3R_1472776_1472937 1.59 1.35 1.37 0.00 3.33 1.59 1.47 1.22 1.12 3.95 0.00 1.52 2.38 0.00 2.35 5.56 1.67 1.79 0.00 0.71 1.49 5.41 1.35 1.72 1.41 0.00 0.88 2.27 4.12 0.97 1.49 3.70 2.40 0.00 4.29 4.05 2.31 2.08 2.26 1.16 2.44 1.41 0.00 1.06 2.50 1.27 2.63 1.48 1.53 3.70 0.99 1.69 2.94 1.89 2.08 0.00 2.08 2.27 K mutually_exclusive bbc,I_chr2R_9376554_9377246,REI_chr2R_9379401_9381986 chr2R - chr2R_9375638_9376421,chr2R_9376554_9378939;chr2R_9375638_9377246,chr2R_9377379_9378939 chr2R_9375638_9378244,chr2R_9378377_9378939 chr2R_9376422_9376553;chr2R_9377247_9377378 chr2R_9378245_9378376 chr2R_9375479_9375637;chr2R_9378940_9379098 93.99 94.14 92.77 90.15 94.40 90.73 89.47 88.89 91.98 98.27 91.53 90.81 84.68 90.14 91.57 81.44 93.22 86.44 88.49 89.02 90.24 90.33 92.11 91.76 94.58 92.41 94.10 96.49 95.82 96.14 91.90 96.00 96.77 89.72 94.56 87.35 96.36 94.50 95.00 96.39 97.91 92.56 91.49 95.40 97.46 97.45 94.82 98.28 90.81 93.99 94.76 95.80 96.11 94.61 92.86 94.93 96.52 97.98 K intron_retention I_chr2R_2539027_2539493,Opbp chr2R + chr2R_2541566_2541621 chr2R_2541565_2541566;chr2R_2541621_2541622 chr2R_2540889_2541565;chr2R_2541622_2542014 0.00 NA NA 21.74 NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 K intron_retention dbr,I_chr2L_67112_67568,RI_chr2L_74573_75077 chr2L + chr2L_67508_67568 chr2L_67507_67508;chr2L_67568_67569 chr2L_67389_67507;chr2L_67569_67668 5.63 NA 0.00 13.64 NA NA 8.00 16.00 8.82 NA NA 2.63 NA 0.00 NA 13.79 NA NA 5.56 5.71 NA NA 22.22 NA NA 0.00 NA NA NA NA 0.00 NA 13.64 2.70 7.14 7.69 NA NA NA 0.00 NA 4.17 NA NA NA 0.00 NA 7.69 3.45 NA 0.00 NA NA NA 16.67 NA NA NA K cassette rl,I_chr2RHet_199154_207044,RI_chr2RHet_203476_203577,RI_chr2RHet_203592_207044,I_chr2RHet_232696_247338,RI_chr2RHet_240197_247338 chr2RHet + chr2RHet_199154_207044 chr2RHet_199154_203348;chr2RHet_203476_207044 chr2RHet_203349_203475 chr2RHet_199054_199153;chr2RHet_207045_207144 100.00 100.00 100.00 95.70 100.00 100.00 100.00 99.05 99.21 91.67 100.00 98.68 97.73 100.00 100.00 98.94 100.00 100.00 97.96 98.61 100.00 100.00 97.83 97.30 100.00 96.55 100.00 95.65 100.00 100.00 100.00 95.00 93.33 98.86 100.00 96.88 95.65 100.00 100.00 97.92 100.00 98.72 100.00 97.83 100.00 100.00 100.00 97.30 99.00 100.00 97.96 97.06 100.00 95.24 100.00 100.00 96.77 96.77 K alternative_donor CG15072,RI_chr2R_14576128_14579545,I_chr2R_14589693_14590032 chr2R + chr2R_14575874_14579545;chr2R_14576049_14579545;chr2R_14576247_14579545;chr2R_14576056_14579545;chr2R_14576154_14579545 chr2R_14576017_14579545 chr2R_14579546_14579571;chr2R_14575805_14575873 12.50 0.00 40.00 15.38 0.00 16.67 17.65 27.78 8.00 12.50 11.11 13.33 11.76 16.67 12.50 27.78 0.00 28.57 33.33 20.00 25.00 0.00 22.22 20.00 0.00 37.50 14.29 0.00 0.00 0.00 0.00 0.00 9.09 6.67 8.33 25.00 12.50 0.00 20.00 11.76 0.00 21.43 22.22 36.36 0.00 0.00 0.00 11.11 12.50 0.00 0.00 20.00 25.00 50.00 0.00 0.00 25.00 33.33 K intron_retention Ipk1 chr2R + chr2R_16764127_16764759 chr2R_16764126_16764127;chr2R_16764759_16764760 chr2R_16763980_16764126;chr2R_16764760_16764817 3.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N jcn_only_AD Dbp80,E_chr3LHet_2513829_2513928 chr3LHet + chr3LHet_2409947_2410016 chr3LHet_2409959_2410016 chr3LHet_2410017_2410075;chr3LHet_2409938_2409946 100.00 100.00 100.00 85.33 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA NA NA NA NA 100.00 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA 100.00 K jcn_only_AA I_chr3R_23771063_23772599,CG4951,RI_chr3R_23778808_23778861 chr3R - chr3R_23778799_23778865 chr3R_23778808_23778865 chr3R_23778866_23778961;chr3R_23778715_23778798 96.83 97.83 97.33 96.00 92.31 95.24 93.44 95.79 93.55 94.64 98.53 97.06 100.00 93.44 95.70 96.83 96.67 97.01 98.63 97.45 100.00 95.89 94.44 97.48 95.65 96.77 97.83 95.92 98.85 98.17 95.59 96.40 96.72 99.12 98.53 100.00 94.40 97.56 97.22 94.20 97.56 97.26 96.83 96.55 94.90 95.21 97.20 97.93 95.65 96.40 96.88 98.04 96.26 91.76 96.47 97.03 98.16 97.46 K intron_retention CG6294,CG6299,I_chrX_15359667_15359763 chrX + chrX_15360510_15360575 chrX_15360509_15360510;chrX_15360575_15360576 chrX_15360252_15360509;chrX_15360576_15360845 11.63 5.41 5.00 16.67 16.13 12.20 9.52 5.63 7.45 0.00 12.50 7.14 15.56 3.03 6.90 13.51 3.03 14.29 5.26 6.45 13.64 33.33 14.29 14.29 12.50 8.57 12.50 52.38 11.54 11.76 8.51 12.00 9.09 12.82 3.57 17.39 10.00 15.38 11.69 14.29 20.00 7.62 11.76 5.13 10.00 18.52 10.00 22.22 12.50 20.00 5.17 9.09 10.00 6.78 11.11 11.63 10.00 16.00 K jcn_only_AA CG16710,CG18754 chr3R + chr3R_19509105_19509242 chr3R_19509105_19509176 chr3R_19508492_19509104;chr3R_19509243_19509606 99.17 97.37 97.00 100.00 100.00 100.00 99.00 99.15 100.00 NA 100.00 100.00 100.00 98.53 98.51 98.73 100.00 100.00 100.00 97.24 98.84 100.00 100.00 96.72 100.00 98.28 93.33 NA NA 95.45 100.00 100.00 100.00 97.90 97.56 95.00 96.92 100.00 100.00 95.95 100.00 99.17 100.00 97.83 96.55 100.00 97.92 96.88 99.19 96.30 97.47 100.00 100.00 96.88 100.00 98.08 100.00 NA K multi_cassette RI_chrX_11473566_11473702,roX2,noncoding_23149,I_chrX_11475074_11475402 chrX + chrX_11473158_11473702 chrX_11473158_11473247;chrX_11473270_11473381;chrX_11473433_11473544;chrX_11473562_11473702 chrX_11473248_11473269;chrX_11473382_11473432;chrX_11473545_11473561 chrX_11473148_11473157;chrX_11473703_11473726 14.55 22.22 NA 10.53 NA NA NA 16.67 19.05 18.18 NA 13.79 NA 10.00 7.14 10.00 NA NA 11.76 15.79 NA NA NA NA NA 33.33 NA NA NA NA 14.29 NA NA 14.81 NA NA NA NA NA 10.34 NA 17.65 14.29 NA NA 23.08 20.00 6.67 15.62 NA NA NA NA NA 10.53 NA 30.00 5.88 K jcn_only_AD CG6236 chr3R - chr3R_11153785_11153876;chr3R_11153785_11153869 chr3R_11153785_11153849 chr3R_11153649_11153784;chr3R_11153877_11153988 36.96 38.75 27.78 35.71 57.69 39.02 32.84 38.74 38.27 38.46 40.91 46.62 59.26 60.00 28.12 32.94 NA 38.46 40.00 37.16 58.33 50.85 26.17 32.94 37.78 60.00 23.89 30.88 37.08 31.62 43.90 27.27 31.48 39.09 31.94 34.78 30.65 28.21 36.84 33.84 35.92 34.40 50.00 31.29 34.44 35.38 32.00 39.15 39.84 27.50 30.56 40.91 44.05 40.68 46.34 30.68 27.37 44.27 K jcn_only_AD pelo,I_chr2L_9707821_9708144,I_chr2L_9707891_9708144,I_chr2L_9708081_9708144 chr2L + chr2L_9707891_9708144;chr2L_9706747_9708144;chr2L_9707821_9708144 chr2L_9708081_9708144 chr2L_9708145_9708244;chr2L_9706647_9706746 0.00 1.52 0.00 0.00 0.00 0.00 1.52 1.01 0.00 0.00 2.08 0.90 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 2.13 3.23 0.00 0.00 2.38 0.00 2.02 3.12 3.66 1.54 0.00 3.37 0.00 0.00 0.00 0.00 1.20 0.00 0.00 1.69 0.93 0.00 0.00 1.41 0.00 0.00 0.00 0.81 0.00 0.00 1.04 0.00 0.00 1.54 0.00 1.19 0.00 1.34 K intron_retention Arp14D,RE_chrX_16445264_16446372 chrX - chrX_16443940_16444009 chrX_16443939_16443940;chrX_16444009_16444010 chrX_16443511_16443939;chrX_16444010_16444219 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.53 0.47 0.00 0.00 0.00 2.50 4.17 0.00 0.00 0.44 0.00 0.49 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.00 K alternative_acceptor CG10737 chr2R + chr2R_15064029_15064095 chr2R_15064029_15064092 chr2R_15063921_15064028;chr2R_15064096_15064248 99.06 99.06 100.00 99.17 98.80 100.00 99.00 99.31 98.94 97.06 100.00 99.36 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.48 100.00 98.86 99.02 98.95 98.70 100.00 98.77 100.00 97.56 98.41 99.07 100.00 98.00 100.00 98.33 98.33 98.45 98.89 99.32 98.78 100.00 97.88 100.00 98.80 98.67 98.95 100.00 94.87 99.33 100.00 99.14 98.25 98.77 98.96 99.04 97.83 99.35 98.28 K intron_retention CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1525704_1527189 chr3L_1525703_1525704;chr3L_1527189_1527190 chr3L_1525642_1525703;chr3L_1527190_1527240 58.62 54.55 59.09 37.50 70.00 72.73 57.50 71.43 55.32 50.00 77.78 68.00 65.22 76.92 73.33 72.41 52.38 66.67 89.47 52.17 61.11 52.63 39.53 44.00 57.89 NA 52.38 NA 64.71 61.11 66.67 53.85 75.00 63.64 64.71 53.85 42.31 57.89 60.87 61.11 46.67 57.78 81.82 66.67 50.00 57.14 70.00 55.56 54.17 63.16 42.86 46.15 35.29 60.00 58.62 42.86 37.04 58.82 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2392054;chrX_2392149_2392515;chrX_2392665_2393243;chrX_2393712_2395659 chrX_2392055_2392148;chrX_2392516_2392664;chrX_2393244_2393711 chrX_2387149_2387248;chrX_2395660_2395759 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 1.12 0.00 0.00 0.00 0.00 0.00 0.00 1.39 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K alternative_donor CG11360,noncoding_20761,I_chr4_701221_705206,I_chr4_705000_705206 chr4 + chr4_701762_705206 chr4_705000_705206 chr4_705207_705306;chr4_701667_701761 4.00 4.35 2.94 8.57 3.85 4.00 2.38 3.77 2.90 10.00 4.17 7.69 5.56 4.00 3.33 7.69 2.86 3.45 3.23 4.17 2.70 7.69 3.23 5.56 0.00 4.35 5.56 10.00 0.00 0.00 3.12 NA 7.14 4.00 4.76 10.00 0.00 4.76 0.00 4.08 NA 3.12 3.23 3.45 NA 0.00 NA 4.55 4.88 0.00 4.17 5.88 NA NA 2.13 NA NA 0.00 K intron_retention CG1621,CG1620 chr2R - chr2R_3382967_3383030 chr2R_3382966_3382967;chr2R_3383030_3383031 chr2R_3382371_3382966;chr2R_3383031_3383797 0.00 0.00 0.00 12.12 0.00 0.00 0.00 4.62 2.78 0.00 0.00 0.00 4.65 0.00 3.77 1.72 2.08 0.00 2.08 2.94 5.26 0.00 0.00 0.00 0.00 0.00 4.41 3.85 2.00 0.00 0.00 0.00 1.09 2.99 0.00 0.00 0.00 0.00 0.00 0.00 3.12 2.61 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 K jcn_only_AD CG4699 chr3R + chr3R_11624200_11624442;chr3R_11624133_11624442;chr3R_11624127_11624442 chr3R_11624190_11624442 chr3R_11624443_11624758;chr3R_11623809_11624126 18.03 21.50 16.13 21.11 15.79 18.03 18.97 15.85 18.98 20.91 12.50 20.44 15.00 9.80 12.66 14.08 19.61 14.29 18.87 13.38 18.92 19.58 26.55 18.52 20.35 21.31 23.12 21.51 14.21 14.29 13.64 16.33 16.36 10.64 17.24 25.97 18.34 16.56 15.18 21.92 23.73 20.16 6.25 16.08 11.57 18.18 16.18 17.89 11.93 21.26 20.69 21.35 19.73 23.68 7.14 22.14 15.91 11.85 K cassette par-1,I_chr2R_15361473_15366246,I_chr2R_15362147_15365120,F_chr2R_15362147_15365138,I_chr2R_15362147_15365165,RI_chr2R_15363358_15365120,I_chr2R_15363358_15366246,I_chr2R_15365210_15370456 chr2R + chr2R_15361473_15366246 chr2R_15361473_15365165;chr2R_15365210_15366246 chr2R_15365166_15365209 chr2R_15361373_15361472;chr2R_15366247_15366346 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor As chr3L - chr3L_11200236_11200299 chr3L_11200236_11200297 chr3L_11199522_11200235;chr3L_11200300_11200790 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 90.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 K multi_cassette Rph,I_chrX_10644396_10644958,I_chrX_10646283_10647245,I_chrX_10647710_10648325,RI_chrX_10649048_10651427 chrX - chrX_10645816_10647245 chrX_10645816_10645935;chrX_10646283_10646360;chrX_10646529_10647245 chrX_10645936_10646282;chrX_10646361_10646528 chrX_10644959_10645815;chrX_10647246_10647345 7.69 4.35 9.52 33.33 0.00 4.76 8.33 23.81 11.63 NA 36.36 15.15 26.32 NA 3.70 25.00 6.67 4.35 5.56 14.29 44.44 14.29 15.38 9.09 NA 10.00 18.18 7.69 10.00 NA 16.67 NA 0.00 6.25 NA 0.00 5.56 7.14 0.00 5.56 NA 5.00 20.00 21.43 5.56 NA 7.14 0.00 13.89 0.00 4.76 20.00 6.25 0.00 12.00 9.09 5.56 0.00 K jcn_only_AD CG17737,I_chr3L_3223527_3224313,I_chr3L_3223943_3224313 chr3L + chr3L_3223415_3223474 chr3L_3223422_3223474 chr3L_3223475_3223526;chr3L_3223400_3223414 3.70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 3.70 NA NA NA NA NA NA NA NA NA K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2392054 chrX_2387249_2389073;chrX_2389272_2389644;chrX_2389762_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2392054 chrX_2389074_2389271;chrX_2389645_2389761;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2392055_2392148 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Khc-73 chr2R - chr2R_11409610_11410378 chr2R_11409609_11409610;chr2R_11410378_11410379 chr2R_11409507_11409609;chr2R_11410379_11410524 5.88 5.56 5.71 12.77 8.33 3.85 4.44 9.09 6.33 5.88 9.09 4.76 22.22 5.26 7.32 5.66 4.76 10.71 8.70 8.22 8.70 3.77 5.41 12.50 13.79 18.18 5.26 7.89 3.77 5.26 8.33 4.35 10.53 0.00 5.88 25.00 7.94 5.41 3.77 7.94 8.33 6.35 0.00 6.38 0.00 0.00 3.12 7.58 8.00 2.70 4.55 5.71 4.76 9.09 4.55 3.23 7.69 0.00 K intron_retention Syx7,I_chr3L_21439901_21439962 chr3L + chr3L_21440598_21440655 chr3L_21440597_21440598;chr3L_21440655_21440656 chr3L_21440181_21440597;chr3L_21440656_21441235 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 6.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042888_5042983;chr2L_5042891_5042983 chr2L_5042935_5042983 chr2L_5042984_5043016;chr2L_5042835_5042887 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 5.88 NA NA 0.00 0.00 NA NA 0.00 0.00 NA NA NA NA NA 25.00 NA 0.00 22.22 NA 11.11 0.00 0.00 9.09 NA 12.50 NA NA NA 0.00 20.00 12.50 NA NA NA 0.00 NA 0.00 7.14 NA 11.11 NA NA NA 0.00 NA NA 0.00 K intron_retention BicD,Aac11,I_chr2L_17475843_17475910 chr2L - chr2L_17475523_17475587 chr2L_17475522_17475523;chr2L_17475587_17475588 chr2L_17475408_17475522;chr2L_17475588_17475615 97.40 100.00 95.00 91.87 100.00 100.00 97.62 97.83 97.56 97.47 100.00 95.49 96.61 93.44 97.06 97.20 94.00 98.18 98.72 96.83 100.00 93.86 96.84 96.88 98.31 100.00 98.65 96.40 99.00 99.13 100.00 96.41 95.43 96.43 94.94 100.00 97.62 97.30 98.63 93.55 97.40 97.81 100.00 96.91 94.19 94.79 95.96 97.28 96.92 96.97 98.88 98.18 97.75 98.81 98.65 98.91 95.18 95.99 K multi_cassette Nos,I_chr2L_10826086_10826539 chr2L - chr2L_10817145_10822967 chr2L_10817145_10818391;chr2L_10818567_10822106;chr2L_10822247_10822967 chr2L_10818392_10818566;chr2L_10822107_10822246 chr2L_10816983_10817144;chr2L_10822968_10823002 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA 20.00 75.00 60.00 NA NA NA NA 57.14 NA NA NA 75.00 NA NA NA 75.00 75.00 60.00 NA NA NA NA NA NA NA 66.67 NA NA NA 100.00 NA NA NA NA NA NA NA K intron_retention CG10908 chr2L + chr2L_1974142_1974204 chr2L_1974141_1974142;chr2L_1974204_1974205 chr2L_1974107_1974141;chr2L_1974205_1974480 100.00 98.95 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.64 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.39 98.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.11 98.36 100.00 100.00 100.00 99.03 100.00 100.00 98.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Atg1,I_chr3L_12790957_12792478 chr3L - chr3L_12780637_12780696 chr3L_12780636_12780637;chr3L_12780696_12780697 chr3L_12780487_12780636;chr3L_12780697_12780833 43.84 53.12 35.48 56.76 45.45 34.78 57.78 51.22 49.18 48.48 62.96 53.33 33.33 47.62 37.50 47.06 33.33 48.15 34.78 60.71 61.54 56.76 43.84 50.98 52.17 66.67 30.91 32.61 69.39 43.59 46.43 46.67 26.47 46.88 33.33 42.86 50.00 43.10 31.15 39.06 42.86 40.62 39.13 40.00 38.46 48.00 41.18 36.84 42.86 44.44 40.35 36.11 50.00 45.16 37.04 50.00 41.38 23.08 K intron_retention eIF2B-alpha chr3R - chr3R_25760804_25760858 chr3R_25760803_25760804;chr3R_25760858_25760859 chr3R_25760533_25760803;chr3R_25760859_25761013 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 3.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention CG31216 chr3R + chr3R_15521353_15522273 chr3R_15521352_15521353;chr3R_15522273_15522274 chr3R_15521306_15521352;chr3R_15522274_15522378 41.52 NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA 46.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA N jcn_only_AA Rab2,I_chr2R_2584435_2585553 chr2R + chr2R_2585891_2585965 chr2R_2585891_2585950 chr2R_2585554_2585890;chr2R_2585966_2586134 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.40 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Sap47,I_chr3R_11761076_11761674,I_chr3R_11761436_11761674,F_chr3R_11761635_11761698,E_chr3R_11761635_11761703 chr3R + chr3R_11761307_11761674 chr3R_11761306_11761307;chr3R_11761674_11761675 chr3R_11761299_11761306;chr3R_11761675_11761774 77.78 85.71 65.38 85.71 76.19 78.26 62.79 91.94 76.39 90.00 45.00 80.70 58.62 88.00 75.76 79.66 81.08 67.86 76.92 76.00 53.33 97.78 77.78 76.00 77.78 66.67 70.00 75.00 91.30 90.62 72.92 76.19 95.83 81.36 63.64 88.24 82.61 70.00 77.78 77.50 54.17 76.67 82.14 74.07 64.00 81.82 88.00 78.12 77.42 68.00 77.14 88.89 79.17 82.35 81.40 94.12 90.91 73.91 K jcn_only_AD how chr3R + chr3R_17867954_17868628 chr3R_17868078_17868628 chr3R_17868629_17869101;chr3R_17867942_17867953 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA NA 97.67 NA 100.00 100.00 100.00 NA NA 97.56 97.92 NA 100.00 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 98.18 NA NA NA NA NA 100.00 NA NA 100.00 K alternative_donor CG30492,C_chr2R_3522706_3523025,RI_chr2R_3536203_3536977,I_chr2R_3543397_3543455 chr2R + chr2R_3516481_3517681 chr2R_3516618_3517681 chr2R_3517682_3517750;chr2R_3516480_3516480 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG7029 chr3R + chr3R_18618322_18618379 chr3R_18618321_18618322;chr3R_18618379_18618380 chr3R_18618112_18618321;chr3R_18618380_18618847 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG9526,I_chr2L_6457114_6457365,I_chr2L_6457278_6457337 chr2L + chr2L_6457114_6457337 chr2L_6457278_6457337 chr2L_6457338_6457437;chr2L_6457014_6457113 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 1.52 4.17 0.00 0.00 0.00 2.56 3.80 0.00 3.39 1.82 0.00 1.54 0.00 2.13 0.00 2.70 0.00 2.41 1.69 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 2.38 0.00 0.00 NA 0.00 0.00 0.00 2.56 0.00 K jcn_only_AA CG1021,I_chr3R_2217711_2231099,I_chr3R_2217711_2231390,RI_chr3R_2217711_2231463,I_chr3R_2217742_2218601,I_chr3R_2217742_2219453,I_chr3R_2218465_2231390,RI_chr3R_2218465_2231463,I_chr3R_2218682_2231463,I_chr3R_2219634_2231390,I_chr3R_2231383_2231463 chr3R - chr3R_2217742_2218601;chr3R_2217711_2218601 chr3R_2218465_2218601 chr3R_2218602_2218681;chr3R_2217642_2217710 12.50 9.52 21.74 22.58 NA NA NA 18.52 15.79 NA NA 15.38 24.00 NA 3.57 9.52 NA NA NA 0.00 7.41 10.26 4.88 10.00 14.71 18.18 25.93 25.71 NA NA NA NA 13.89 19.15 NA 14.81 12.12 11.43 9.62 16.36 NA 12.50 NA 18.92 NA NA 9.09 NA 19.44 11.11 10.53 12.50 0.00 NA 15.38 19.05 1.69 4.35 K intron_retention Csk,I_chr3R_7463337_7463512,I_chr3R_7468917_7472437,I_chr3R_7468917_7472509,I_chr3R_7468928_7472509 chr3R - chr3R_7468928_7472509 chr3R_7468927_7468928;chr3R_7472509_7472510 chr3R_7468892_7468927;chr3R_7472510_7472537 73.40 75.00 88.89 74.07 63.64 66.67 82.35 81.25 63.64 NA 50.00 65.38 72.73 66.67 75.00 79.41 77.78 NA 76.92 69.23 60.00 NA 68.75 91.67 63.64 75.00 78.26 NA NA 77.78 80.00 NA 72.73 66.67 36.36 70.00 46.15 NA NA 54.55 63.64 68.18 88.89 80.00 NA NA NA 76.92 80.65 NA 53.33 76.47 NA NA 75.00 NA NA NA K intron_retention Ucrh,CREFI_chr3LHet_606442_607073 chr3LHet + chr3LHet_606275_606349 chr3LHet_606274_606275;chr3LHet_606349_606350 chr3LHet_606198_606274;chr3LHet_606350_606441 3.12 4.35 2.82 2.97 0.00 4.05 1.89 5.42 3.27 8.70 1.61 2.70 2.97 2.44 2.11 4.60 1.64 4.55 2.40 4.81 0.00 0.00 9.09 7.69 13.04 6.06 18.52 NA 3.45 6.67 0.98 0.00 2.56 3.95 29.41 11.76 0.00 0.00 5.26 0.00 0.00 1.89 0.00 0.00 5.00 4.48 0.00 2.63 2.94 4.55 25.00 6.25 NA NA 1.98 8.89 6.25 4.17 K intron_retention CG8889 chr2R - chr2R_7914078_7914227 chr2R_7914077_7914078;chr2R_7914227_7914228 chr2R_7914036_7914077;chr2R_7914228_7914347 0.00 NA NA 0.00 NA NA 5.56 10.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 10.00 NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA 0.00 NA NA NA NA 0.00 NA NA K intron_retention Tfb4,I_chr2L_1156009_1158078,I_chr2L_1153732_1157370,I_chr2L_1163632_1163759 chr2L - chr2L_1150070_1150130 chr2L_1150069_1150070;chr2L_1150130_1150131 chr2L_1149651_1150069;chr2L_1150131_1150326 0.00 0.00 0.00 3.39 0.00 0.00 0.00 1.69 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.74 2.41 0.00 3.03 7.89 2.82 6.12 9.52 3.64 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 1.32 1.23 5.26 1.18 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 K intron_retention dpr17 chr3R + chr3R_7936756_7936825 chr3R_7936755_7936756;chr3R_7936825_7936826 chr3R_7936554_7936755;chr3R_7936826_7937080 88.89 87.10 94.12 96.30 89.47 100.00 93.75 91.67 90.91 72.73 76.92 88.89 100.00 95.65 92.00 86.96 94.12 92.31 94.44 85.00 92.31 78.95 92.45 88.89 94.44 95.24 84.38 81.82 80.00 80.95 95.24 81.82 72.73 89.66 86.96 89.47 88.24 80.95 86.49 85.11 96.88 78.57 100.00 82.05 77.78 85.42 78.05 71.88 91.84 88.89 85.71 95.45 90.48 81.25 80.95 85.00 91.07 85.19 K cassette lap,I_chr3R_3017854_3019314 chr3R + chr3R_3022116_3024049 chr3R_3022116_3023291;chr3R_3023382_3024049 chr3R_3023292_3023381 chr3R_3022029_3022115;chr3R_3024050_3024362 83.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Aldh-III,RE_chr2R_3355332_3355720,I_chr2R_3356541_3356614,RI_chr2R_3357578_3357636,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3354822_3354987 chr2R_3354821_3354822;chr2R_3354987_3354988 chr2R_3354726_3354821;chr2R_3354988_3355138 8.70 5.92 8.51 14.13 8.05 10.11 12.99 7.45 8.70 6.98 8.89 7.56 10.00 7.79 9.71 9.32 6.74 12.50 9.30 10.29 8.96 25.58 8.75 7.73 11.11 19.70 9.46 11.90 12.50 10.11 6.74 8.54 10.26 8.59 5.94 20.24 6.33 4.83 6.19 8.57 12.31 9.57 6.94 5.08 9.80 9.09 6.22 12.07 7.69 8.55 7.32 4.44 6.67 6.25 10.75 6.74 6.25 11.94 K alternative_acceptor CG9286,Dip-B chr3R + chr3R_9606899_9606962 chr3R_9606899_9606959 chr3R_9606831_9606898;chr3R_9606963_9607027 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 NA 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 93.33 96.30 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.78 K jcn_only_AD CG7530,I_chr3R_10556352_10557136,eff chr3R - chr3R_10556352_10557105;chr3R_10556352_10557130;chr3R_10556352_10557126;chr3R_10556352_10557198 chr3R_10556352_10557148 chr3R_10556252_10556351;chr3R_10557199_10557231 1.23 0.00 0.00 4.88 0.98 1.39 0.00 1.19 0.00 0.00 0.00 1.36 1.28 1.16 3.88 1.67 0.00 1.75 3.06 2.44 1.27 NA 0.77 0.00 2.33 0.00 3.03 0.00 5.77 0.00 1.22 1.89 4.00 1.29 0.00 0.00 0.82 3.57 1.69 1.55 0.00 1.09 2.27 3.03 0.00 1.35 1.25 0.60 2.56 0.00 0.00 0.00 2.31 1.61 0.88 3.30 0.00 1.47 N cassette unc-13,I_chr4_897821_902468,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_897821_903242;chr4_899619_903242;chr4_899619_903586;chr4_897821_903586 chr4_897821_902468,chr4_899619_902468;chr4_902576_903242,chr4_902576_903586 chr4_902469_902575 chr4_897721_897820;chr4_903587_903686 22.05 25.00 58.33 12.73 14.29 23.08 15.38 22.45 21.28 NA NA 19.61 62.50 28.57 22.22 34.62 30.77 50.00 36.84 16.67 NA 9.86 25.00 10.00 16.67 18.52 10.26 23.53 13.64 17.65 17.39 NA 29.41 28.95 25.00 7.14 20.00 NA 25.00 25.00 20.00 21.88 29.41 21.88 NA 14.29 NA 13.89 27.78 NA 13.64 27.27 NA NA 28.57 NA NA NA K intron_retention RpS15 chr2R - chr2R_12458511_12458693 chr2R_12458510_12458511;chr2R_12458693_12458694 chr2R_12458422_12458510;chr2R_12458694_12458716 0.04 0.00 0.04 0.02 0.00 0.00 0.28 0.06 0.04 0.12 0.04 0.07 0.04 0.10 0.07 0.00 0.00 0.00 0.07 0.04 0.04 0.00 0.00 0.09 0.67 0.32 0.65 0.46 0.00 0.00 0.69 0.00 0.00 0.05 0.00 0.00 0.08 0.00 0.00 0.00 1.14 0.05 0.00 0.28 0.00 0.00 0.00 0.00 0.04 0.00 0.76 0.38 0.00 0.00 0.09 0.00 0.10 0.00 K alternative_donor CG11986,I_chr3R_4841440_4841505 chr3R + chr3R_4841238_4841290 chr3R_4841242_4841290 chr3R_4841291_4841990;chr3R_4841168_4841237 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG32138 chr3L + chr3L_14062028_14063021 chr3L_14062027_14062028;chr3L_14063021_14063022 chr3L_14061908_14062027;chr3L_14063022_14063741 87.42 92.05 85.48 93.85 87.50 85.19 88.37 86.02 85.90 88.00 86.96 94.12 98.04 88.14 85.48 85.19 85.96 87.72 91.80 88.59 86.36 84.09 84.72 91.74 88.24 86.89 86.90 89.58 90.57 86.11 85.96 87.80 86.00 85.71 90.00 100.00 90.07 89.90 89.57 89.26 90.48 87.42 83.33 85.71 77.19 88.16 87.39 88.89 91.89 80.77 85.00 85.33 77.17 90.32 86.76 88.89 82.58 69.57 K intron_retention Lerp chr3R - chr3R_22669298_22669469 chr3R_22669297_22669298;chr3R_22669469_22669470 chr3R_22669167_22669297;chr3R_22669470_22669638 26.09 26.09 13.04 17.65 25.00 15.79 37.50 22.22 17.65 33.33 NA 16.00 NA NA 11.76 26.67 NA NA 14.29 26.32 NA 42.86 37.04 37.04 41.18 NA 35.00 NA 33.33 27.27 23.08 30.77 35.71 26.09 16.67 31.82 37.50 29.03 25.00 45.83 NA 14.81 NA 41.18 21.43 19.05 27.27 23.53 28.57 23.08 18.18 NA 29.41 22.73 22.22 19.23 22.73 36.84 K multi_cassette Vha100-1,I_chr3R_24958227_24960770,RI_chr3R_24959152_24959582,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24958227_24960770 chr3R_24958227_24959059;chr3R_24959152_24959582;chr3R_24959684_24960278;chr3R_24960321_24960770 chr3R_24959060_24959151;chr3R_24959583_24959683;chr3R_24960279_24960320 chr3R_24958127_24958226;chr3R_24960771_24960870 40.00 42.86 NA 55.56 NA 33.33 42.86 50.00 50.00 NA NA 94.74 NA 75.00 50.00 NA NA 50.00 NA 55.56 60.00 11.11 40.00 40.00 30.00 50.00 18.18 NA 20.00 NA 17.39 NA 25.00 42.86 33.33 50.00 26.67 28.57 35.71 14.29 28.57 41.67 NA 33.33 42.86 33.33 25.00 NA 55.56 30.00 30.77 25.00 NA NA 75.00 33.33 42.86 NA K intron_retention mthl10 chr3L - chr3L_335858_335928 chr3L_335857_335858;chr3L_335928_335929 chr3L_335245_335857;chr3L_335929_336682 0.00 0.00 0.00 3.37 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 1.59 0.00 0.00 0.76 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 2.94 0.00 0.00 1.08 0.00 0.00 0.00 K intron_retention I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17183481_17200781,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,RI_chr3R_17198778_17199052,RI_chr3R_17198803_17199019,RI_chr3R_17198803_17199052 chr3R - chr3R_17198803_17200781 chr3R_17198802_17198803;chr3R_17200781_17200782 chr3R_17198703_17198802;chr3R_17200782_17200881 9.09 9.09 0.00 10.34 5.56 NA 9.09 25.93 5.41 NA NA 17.24 11.76 12.50 13.33 9.09 0.00 10.53 22.73 10.20 NA 8.33 10.53 8.70 NA 7.41 10.00 25.00 0.00 7.69 NA 0.00 4.65 6.25 NA 18.75 16.13 5.56 9.52 7.32 5.88 22.22 6.67 NA 7.69 4.76 17.65 5.00 20.59 10.00 12.00 0.00 5.56 21.43 12.00 10.53 12.50 9.09 K intron_retention fw chrX - chrX_11889154_11889217 chrX_11889153_11889154;chrX_11889217_11889218 chrX_11889027_11889153;chrX_11889218_11889279 87.50 91.67 NA NA NA NA 72.73 88.89 75.00 66.67 NA 87.50 NA NA 88.89 69.23 NA NA NA 80.95 NA 25.00 72.73 80.00 NA NA 90.00 NA NA 85.71 100.00 76.92 95.00 100.00 88.89 63.64 70.83 88.24 76.92 68.18 70.00 76.92 NA 76.92 94.12 90.91 75.00 71.43 90.00 65.00 94.12 87.50 97.56 89.47 90.00 94.44 92.86 95.00 K intron_retention G9a,I_chrX_144264_144326,I_chrX_145325_145634,I_chrX_145570_145634 chrX + chrX_144272_144326 chrX_144271_144272;chrX_144326_144327 chrX_142428_144271;chrX_144327_144426 0.00 NA NA 7.69 NA NA NA NA 5.88 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 4.76 NA NA NA NA NA NA NA NA NA K jcn_only_AD nudE chr3L + chr3L_9892456_9892825;chr3L_9892498_9892825 chr3L_9892375_9892825 chr3L_9892826_9893184;chr3L_9892344_9892374 1.02 NA NA 4.55 NA NA 4.35 NA 0.00 NA NA 0.00 NA NA NA 2.04 NA NA NA 6.06 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 4.76 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention Pk92B chr3R + chr3R_15711151_15711215 chr3R_15711150_15711151;chr3R_15711215_15711216 chr3R_15710878_15711150;chr3R_15711216_15711758 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 2.90 0.00 0.00 0.00 1.79 0.00 0.00 2.13 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor cul-2,RI_chr2L_21657668_21657832,noncoding_4226,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21657777_21657832;chr2L_21657668_21657832 chr2L_21657742_21657832 chr2L_21657833_21657932;chr2L_21657659_21657667 14.14 15.38 18.18 35.56 26.67 20.83 9.78 20.45 20.97 12.12 16.00 18.33 26.32 28.00 18.18 22.67 15.00 20.00 17.65 24.32 22.22 4.58 7.14 11.63 8.62 22.86 10.00 6.00 7.53 5.88 29.41 21.05 6.59 22.95 8.93 14.14 12.50 9.38 8.51 6.58 4.46 16.36 31.58 2.35 6.25 9.68 12.50 12.94 18.64 10.81 11.54 11.11 20.00 11.11 26.67 14.00 11.32 20.45 K intron_retention pigeon chr2L + chr2L_19186656_19186718 chr2L_19186655_19186656;chr2L_19186718_19186719 chr2L_19186251_19186655;chr2L_19186719_19187017 21.05 29.41 26.67 31.82 15.38 22.22 NA 31.25 27.27 NA NA 21.43 33.33 30.77 30.00 23.08 NA 20.00 26.67 26.83 33.33 7.41 6.25 9.09 22.22 21.05 22.73 36.84 9.09 16.67 36.84 NA 10.71 21.88 21.74 6.25 20.00 19.35 12.20 18.92 0.00 25.71 0.00 NA 10.00 25.00 6.67 12.50 26.32 NA 16.13 12.50 14.29 9.52 21.43 13.33 NA 14.29 K jcn_only_AD smi35A,E_chr2L_14222082_14233578,E_chr2L_14222082_14233893,RI_chr2L_14233579_14233647 chr2L - chr2L_14222082_14229531 chr2L_14222082_14229458 chr2L_14222060_14222081;chr2L_14229532_14229536 85.91 NA NA NA NA NA NA 81.82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention I_chr3R_17846331_17846423,CG6028 chr3R - chr3R_17850577_17850647 chr3R_17850576_17850577;chr3R_17850647_17850648 chr3R_17849871_17850576;chr3R_17850648_17850775 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 1.59 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 8.70 0.00 2.78 0.00 0.00 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 K mutually_exclusive CG2316,I_chr4_208796_210623,I_chr4_209150_214298,I_chr4_209369_210623,I_chr4_209875_210055,I_chr4_209875_210628,I_chr4_209875_213969,RI_chr4_209875_214450,I_chr4_210688_211303,RI_chr4_210688_211927,I_chr4_210688_213991,I_chr4_210688_214019,I_chr4_210688_214049,RI_chr4_210688_214450 chr4 - chr4_209150_210623,chr4_210688_214298 chr4_209150_209203,chr4_209875_214298 chr4_210624_210687 chr4_209204_209874 chr4_209051_209149;chr4_214299_214311 100.00 100.00 93.75 90.91 100.00 91.67 97.62 96.08 96.97 NA 100.00 96.88 100.00 100.00 100.00 96.97 100.00 90.91 100.00 100.00 66.67 100.00 94.44 100.00 100.00 90.00 100.00 100.00 100.00 85.71 92.31 100.00 NA 97.50 92.31 100.00 100.00 100.00 100.00 100.00 NA 96.55 100.00 85.71 NA 90.00 83.33 100.00 97.22 100.00 93.75 100.00 100.00 100.00 93.33 100.00 85.71 85.71 K jcn_only_AA CG7995,EF_chr3L_1739282_1743211 chr3L + chr3L_1738745_1743211 chr3L_1738745_1743207 chr3L_1738599_1738744;chr3L_1743212_1743311 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 92.00 NA NA NA NA NA NA NA NA 100.00 NA 96.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 K alternative_acceptor CG40351 chr3LHet + chr3LHet_594526_594779;chr3LHet_594526_594765 chr3LHet_594526_594756 chr3LHet_594511_594525;chr3LHet_594780_595060 43.18 NA NA 50.00 NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Dlic chrX + chrX_11048699_11049066 chrX_11048724_11049066 chrX_11049067_11049261;chrX_11048472_11048698 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 1.59 1.85 0.00 1.75 0.88 0.00 0.00 0.00 1.72 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 K intron_retention sd,noncoding_23930,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15707636_15707768 chrX_15707635_15707636;chrX_15707768_15707769 chrX_15707634_15707635;chrX_15707769_15708328 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 94.44 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 93.75 NA 100.00 100.00 100.00 100.00 NA NA 100.00 94.74 92.31 100.00 100.00 NA NA 91.67 NA 95.00 95.83 NA 100.00 100.00 NA NA 100.00 NA NA 92.31 K cassette Gmap,I_chrX_15393496_15401194,I_chrX_15400854_15401194,I_chrX_15402291_15403750 chrX + chrX_15393496_15401194 chrX_15393496_15397618;chrX_15400495_15401194 chrX_15397619_15400494 chrX_15393449_15393495;chrX_15401195_15401294 99.22 96.83 98.21 100.00 97.73 100.00 97.50 98.81 100.00 98.51 100.00 99.01 97.87 100.00 100.00 100.00 100.00 100.00 100.00 99.22 100.00 98.89 97.92 100.00 100.00 100.00 97.33 100.00 98.33 98.53 100.00 98.15 100.00 100.00 97.96 97.10 100.00 98.88 100.00 99.06 98.31 99.13 97.78 100.00 98.53 98.70 100.00 100.00 99.08 100.00 98.11 100.00 98.72 100.00 98.51 100.00 98.92 100.00 K jcn_only_AA tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_563503_565232;chr3R_563485_565232 chr3R_563461_565232 chr3R_565233_565290;chr3R_563195_563460 11.41 NA NA 0.00 NA NA 26.67 10.34 10.91 NA NA 13.64 NA NA 15.00 NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA 10.71 NA NA 22.58 NA NA NA NA NA NA NA 11.90 NA NA NA NA NA NA 9.76 NA NA NA NA NA 0.00 NA NA NA N intron_retention CG15099 chr2R - chr2R_14725051_14725138 chr2R_14725050_14725051;chr2R_14725138_14725139 chr2R_14724985_14725050;chr2R_14725139_14725207 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 37.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor bol,RI_chr3L_9117011_9118271 chr3L - chr3L_9117011_9118271;chr3L_9116901_9118271 chr3L_9116877_9118271 chr3L_9118272_9118272;chr3L_9116716_9116876 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA N jcn_only_AA nimC1,I_chr2L_13975880_13975977 chr2L - chr2L_13975880_13976476 chr2L_13976221_13976476 chr2L_13976477_13976753;chr2L_13975780_13975879 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA NA NA NA 31.43 NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA NA NA K alternative_acceptor CG11163,I_chr2R_1666219_1669711 chr2R - chr2R_1662576_1662764 chr2R_1662702_1662764 chr2R_1662765_1662934;chr2R_1662507_1662575 97.30 97.14 100.00 97.62 94.44 96.30 100.00 97.96 98.33 90.00 96.43 96.67 100.00 97.06 97.22 97.67 95.65 97.30 96.43 98.53 96.55 100.00 97.30 93.55 100.00 96.30 96.67 NA 85.71 100.00 97.44 93.75 100.00 97.73 88.00 90.00 96.88 96.43 100.00 100.00 90.91 98.18 95.45 100.00 100.00 96.55 96.77 100.00 98.25 91.89 100.00 100.00 100.00 100.00 100.00 96.97 98.11 95.24 K alternative_acceptor CG14982 chr3L + chr3L_3943295_3943355 chr3L_3943295_3943346 chr3L_3942936_3943294;chr3L_3943356_3944341 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Zyx102EF,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1078199_1078263 chr4_1078199_1078258 chr4_1078191_1078198;chr4_1078264_1078326 94.66 94.59 94.29 94.00 95.24 87.88 93.44 94.94 94.23 NA NA 91.07 95.65 90.62 94.87 98.15 100.00 96.77 90.70 92.65 NA NA 85.29 96.88 70.00 92.86 94.74 NA NA 100.00 93.22 96.77 NA 93.55 92.00 100.00 NA NA NA 92.86 95.83 88.06 93.02 89.66 95.83 95.45 95.00 NA 95.00 97.96 94.74 100.00 94.34 95.65 96.00 92.86 94.44 100.00 K intron_retention CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_261460_263795 chr4_261459_261460;chr4_263795_263796 chr4_261360_261459;chr4_263796_263839 93.75 NA 90.00 NA NA NA 100.00 84.62 93.75 NA NA 93.75 42.86 100.00 87.50 100.00 NA NA 88.89 94.44 NA NA NA NA NA NA NA NA NA NA 88.89 NA NA 92.31 NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA 88.89 NA NA NA K jcn_only_AD M(2)21AB,I_chr2L_107839_110405,I_chr2L_107957_108587,I_chr2L_110878_111037,I_chr2L_112022_112689,RI_chr2L_132256_132482 chr2L + chr2L_108347_108587;chr2L_108227_108587;chr2L_108102_108587 chr2L_107839_108587 chr2L_108588_108687;chr2L_107833_107838 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.85 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD ytr,eIF6,RI_chr2R_19738391_19738783 chr2R - chr2R_19736323_19738093 chr2R_19736323_19738079 chr2R_19734681_19736322;chr2R_19738094_19738171 6.14 6.27 14.06 4.11 3.70 6.57 6.17 6.00 6.33 4.76 5.32 3.65 1.92 5.80 NA 12.07 3.23 4.84 10.96 5.45 6.14 6.98 3.74 6.31 5.92 4.35 4.69 6.85 6.16 10.04 8.79 6.13 6.85 5.59 7.89 5.19 4.40 5.63 6.25 6.89 4.56 5.57 5.94 6.99 5.71 6.17 6.63 10.00 4.05 6.54 8.66 6.28 6.15 5.81 5.80 6.83 7.69 9.00 N intron_retention Droj2,RI_chr3R_9207981_9208471,RI_chr3R_9208529_9209185 chr3R + chr3R_9207981_9209956 chr3R_9207980_9207981;chr3R_9209956_9209957 chr3R_9207926_9207980;chr3R_9209957_9210301 95.74 100.00 100.00 73.73 100.00 100.00 94.86 88.10 95.17 100.00 100.00 92.89 93.88 93.33 100.00 96.49 100.00 100.00 95.03 100.00 100.00 93.48 95.11 100.00 88.29 85.88 90.34 91.53 95.91 95.14 100.00 92.51 100.00 93.78 100.00 94.40 96.43 95.78 94.80 96.11 93.18 96.92 100.00 91.77 94.43 93.66 100.00 96.33 95.17 100.00 95.74 100.00 95.38 100.00 95.35 95.45 93.42 97.07 K jcn_only_AA CG3499,I_chr2R_18772777_18772819 chr2R - chr2R_18772185_18772242 chr2R_18772188_18772242 chr2R_18772243_18772316;chr2R_18771871_18772184 33.33 25.81 32.86 40.40 33.33 27.27 30.48 33.33 35.34 38.71 37.21 39.47 40.38 41.18 29.87 32.74 42.86 23.53 31.75 31.88 29.55 34.33 32.38 35.42 25.00 34.52 27.37 38.67 33.85 41.54 39.76 48.00 36.07 37.50 28.99 40.00 27.78 20.29 32.10 33.99 34.29 33.33 29.17 32.86 43.75 36.54 32.22 38.46 38.03 30.11 29.31 26.32 37.50 33.33 26.58 38.75 26.51 24.19 K intron_retention I_chr3R_25628402_25628511,ncd,I_chr3R_25632049_25632125,RI_chr3R_25658089_25658914 chr3R - chr3R_25632067_25632125 chr3R_25632066_25632067;chr3R_25632125_25632126 chr3R_25631983_25632066;chr3R_25632126_25632194 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.30 1.22 1.61 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.28 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Dsp1,I_chrX_16231287_16231413 chrX + chrX_16227752_16228333;chrX_16228273_16228333;chrX_16227804_16228333;chrX_16227677_16228333 chrX_16227797_16228333 chrX_16228334_16228446;chrX_16227667_16227676 4.76 10.34 3.45 4.88 9.52 8.00 2.22 6.78 9.72 5.56 5.56 4.84 2.70 12.12 3.57 3.23 10.71 3.70 9.52 2.78 5.26 0.00 1.96 3.45 3.23 4.17 5.13 0.00 4.35 0.00 3.03 7.14 4.17 6.35 4.76 3.03 3.33 5.88 8.82 4.08 0.00 3.45 3.33 2.86 0.00 5.26 4.76 10.71 4.76 3.70 2.70 7.69 12.50 0.00 8.82 4.76 5.00 6.67 K intron_retention Lmpt,I_chr3L_16904980_16905228 chr3L + chr3L_16914467_16914536 chr3L_16914466_16914467;chr3L_16914536_16914537 chr3L_16914280_16914466;chr3L_16914537_16915289 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 8.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K cassette Stat92E,RE_chr3R_16362268_16362911,att-ORFB chr3R - chr3R_16362268_16364942 chr3R_16362268_16362915;chr3R_16363186_16364942 chr3R_16362916_16363185 chr3R_16362168_16362267;chr3R_16364943_16365057 100.00 100.00 100.00 97.71 100.00 100.00 99.59 99.71 99.50 100.00 100.00 99.65 99.53 99.43 100.00 99.42 100.00 100.00 99.55 100.00 99.11 95.89 99.49 99.33 100.00 99.30 100.00 100.00 95.12 100.00 99.59 98.78 100.00 99.70 100.00 98.96 100.00 100.00 99.12 98.97 98.81 100.00 100.00 100.00 100.00 99.18 100.00 100.00 99.74 99.28 100.00 100.00 100.00 100.00 100.00 100.00 99.47 100.00 N alternative_acceptor RpL13A,I_chr3R_1450243_1451235,EI_chr3R_1450853_1451054,snoRNA:Me28S-U2134b,snoRNA:Me28S-U2134a chr3R + chr3R_1450853_1451235;chr3R_1450853_1451054 chr3R_1450853_1451134 chr3R_1450753_1450852;chr3R_1451236_1451335 0.00 0.00 0.00 0.01 0.00 0.00 0.18 0.01 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.03 0.12 0.01 0.00 0.01 0.12 0.00 0.01 0.00 0.00 0.00 0.00 0.03 0.01 0.00 0.00 0.00 0.01 0.00 0.01 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.02 0.01 0.00 0.00 0.01 0.01 0.00 K intron_retention CG17333 chrX + chrX_10742279_10742397 chrX_10742278_10742279;chrX_10742397_10742398 chrX_10741803_10742278;chrX_10742398_10742485 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG12703 chrX + chrX_19652310_19652376 chrX_19652309_19652310;chrX_19652376_19652377 chrX_19652135_19652309;chrX_19652377_19653323 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.50 0.29 0.00 0.00 0.34 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.63 0.00 0.90 0.00 0.49 0.65 0.00 0.50 2.76 7.24 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.79 0.69 0.00 0.00 1.01 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3964,I_chr2L_3864196_3864278 chr2L + chr2L_3866987_3867068 chr2L_3866986_3866987;chr2L_3867068_3867069 chr2L_3865978_3866986;chr2L_3867069_3867424 0.00 0.00 NA NA NA 0.00 NA 3.85 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA 26.67 20.00 4.76 NA 5.56 0.00 0.00 0.00 NA NA 9.09 NA 0.00 0.00 14.29 0.00 NA NA 0.00 5.13 0.00 0.00 6.67 0.00 NA NA 0.00 0.00 NA 0.00 0.00 3.45 N multi_cassette Caki chr3R - chr3R_17613003_17615170 chr3R_17613003_17613507;chr3R_17613631_17613704;chr3R_17613825_17615170 chr3R_17613508_17613630;chr3R_17613705_17613824 chr3R_17612895_17613002;chr3R_17615171_17615309 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.47 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention gce chrX + chrX_15211516_15211580 chrX_15211515_15211516;chrX_15211580_15211581 chrX_15211376_15211515;chrX_15211581_15211595 20.78 NA NA NA NA NA 10.81 55.56 NA NA NA NA NA NA NA NA NA NA NA 27.27 NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA K alternative_donor plexA,RI_chr4_1036247_1047588,RI_chr4_1040642_1047395,RI_chr4_1044307_1046841,RF_chr4_1044307_1047399 chr4 - chr4_1044307_1047395;chr4_1044307_1047399 chr4_1044307_1047588 chr4_1044207_1044306;chr4_1047589_1047625 50.00 50.00 50.00 46.67 NA 57.14 40.00 42.31 44.83 NA NA 59.26 46.67 35.71 NA 58.54 60.00 NA 46.15 52.94 NA 87.50 41.67 NA 20.00 NA 50.00 NA 50.00 60.00 71.43 NA NA 23.53 40.00 70.00 NA NA NA 50.00 NA 26.67 42.86 69.23 NA NA NA 70.00 45.00 NA 69.23 33.33 NA NA 33.33 NA NA NA K alternative_acceptor EDTP chr2R - chr2R_13320630_13320695 chr2R_13320636_13320695 chr2R_13320696_13320839;chr2R_13320279_13320629 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 90.00 94.12 NA 100.00 94.74 100.00 100.00 NA 100.00 NA 100.00 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 90.91 100.00 100.00 NA 100.00 100.00 91.67 100.00 100.00 87.50 100.00 100.00 100.00 NA K alternative_acceptor CG10038 chr3R - chr3R_8176185_8176265 chr3R_8176188_8176265 chr3R_8176266_8176360;chr3R_8176096_8176184 87.62 88.89 NA 85.71 NA NA 100.00 91.67 86.36 NA NA 90.00 NA 90.91 NA 88.89 NA NA NA 75.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA 81.25 90.00 NA NA NA NA NA 83.33 66.67 76.92 NA NA NA 100.00 NA 85.71 NA K alternative_acceptor how chr3R + chr3R_17900667_17903085 chr3R_17900667_17903005 chr3R_17900174_17900666;chr3R_17903086_17903573 96.97 100.00 96.67 97.83 100.00 93.55 97.06 98.11 98.51 85.71 100.00 97.73 100.00 96.00 100.00 97.06 100.00 95.24 96.67 94.12 90.48 98.04 100.00 96.88 95.00 87.50 97.06 96.00 100.00 96.97 100.00 100.00 97.37 95.56 92.00 90.62 100.00 100.00 92.11 98.33 100.00 95.24 100.00 100.00 90.91 94.29 96.97 97.30 97.96 85.71 93.94 100.00 91.67 96.55 96.67 95.65 96.67 94.44 K alternative_donor Tfb1 chr2R + chr2R_10250584_10250749 chr2R_10250627_10250749 chr2R_10250750_10251018;chr2R_10250565_10250583 10.12 NA NA 9.52 NA 12.50 NA 7.69 7.14 NA NA 11.76 NA NA 7.14 NA NA NA NA 5.00 7.69 NA NA NA NA NA NA NA NA NA NA NA 54.55 5.56 NA NA NA NA NA 33.33 NA 10.71 NA NA 14.29 NA NA 50.00 4.35 NA NA NA NA NA NA NA NA 33.33 K jcn_only_AD CG5482,I_chr2R_14519136_14519239 chr2R - chr2R_14519136_14519367;chr2R_14519136_14519254 chr2R_14519136_14519239 chr2R_14519036_14519135;chr2R_14519368_14519403 0.00 2.70 0.00 0.00 3.70 2.33 1.75 1.19 2.67 NA 0.00 1.39 3.33 0.00 0.00 4.17 0.00 0.00 2.33 0.93 0.00 0.00 0.00 0.00 0.00 0.00 2.04 NA 3.57 0.00 1.69 0.00 NA 0.00 2.70 0.00 0.00 2.70 0.00 0.00 NA 1.19 0.00 0.00 3.03 0.00 0.00 0.00 1.16 0.00 1.89 3.85 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG12077,F_chr3L_3318595_3318666,RI_chr3L_3318595_3318691 chr3L - chr3L_3318590_3318691 chr3L_3318595_3318691 chr3L_3318692_3318766;chr3L_3318495_3318589 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 3.23 NA 0.00 2.86 0.00 0.00 NA 0.00 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 0.00 5.26 NA NA NA NA 0.00 NA NA K jcn_only_AD CG9674,I_chr3L_16793055_16793171,I_chr3L_16793055_16793190,I_chr3L_16793055_16800660 chr3L - chr3L_16793055_16793196;chr3L_16793055_16793173 chr3L_16793055_16793200 chr3L_16792955_16793054;chr3L_16793201_16793268 96.15 NA NA 100.00 NA NA 94.74 90.62 89.80 NA 100.00 NA NA NA NA 100.00 NA NA 95.65 93.94 NA 95.45 100.00 NA NA NA NA 96.15 96.77 NA 93.55 NA 96.30 96.15 95.00 NA NA NA NA 95.45 NA 100.00 NA NA NA NA NA 96.67 96.30 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG18213 chr3R - chr3R_12865398_12865459 chr3R_12865407_12865459 chr3R_12865460_12865528;chr3R_12865340_12865397 100.00 NA 91.67 95.45 NA NA 100.00 100.00 100.00 100.00 100.00 93.75 100.00 92.31 100.00 100.00 88.89 100.00 90.91 96.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 88.24 100.00 100.00 100.00 NA NA 95.45 100.00 100.00 100.00 90.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA NA NA 94.74 100.00 100.00 90.91 NA NA 93.33 NA NA NA K intron_retention rho-4,CG1703 chrX + chrX_11498707_11498768 chrX_11498706_11498707;chrX_11498768_11498769 chrX_11498345_11498706;chrX_11498769_11499111 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.34 0.00 0.00 0.00 0.00 0.00 0.65 2.10 0.00 0.00 0.00 0.60 1.26 0.42 0.36 0.33 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.74 0.00 0.00 0.00 0.95 0.70 0.00 1.06 1.18 0.42 0.00 0.00 0.74 0.69 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 K cassette RpS12,I_chr3L_13016626_13017469 chr3L + chr3L_13016626_13017469 chr3L_13016626_13016831;chr3L_13016967_13017469 chr3L_13016832_13016966 chr3L_13016588_13016625;chr3L_13017470_13017569 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.98 100.00 99.96 100.00 100.00 100.00 100.00 100.00 100.00 99.84 100.00 99.95 100.00 100.00 100.00 100.00 99.97 99.99 100.00 100.00 99.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.98 100.00 100.00 99.98 100.00 100.00 K alternative_acceptor CG17508,RI_chr2R_1496995_1497120,chr2R_1497138_1497448.0 chr2R + chr2R_1496995_1497120;chr2R_1496995_1497637 chr2R_1496995_1497568 chr2R_1496895_1496994;chr2R_1497638_1497761 91.18 93.02 93.55 80.26 92.86 91.89 78.38 87.74 90.52 92.31 95.12 88.31 82.50 88.89 94.23 90.32 94.55 95.83 88.06 91.21 95.45 95.00 93.33 94.12 78.26 92.68 89.36 88.89 83.33 93.94 92.98 92.86 90.62 88.64 87.10 87.50 96.77 93.10 94.29 92.86 86.36 90.22 95.83 95.24 95.65 89.36 88.46 95.24 89.62 89.13 90.74 92.11 87.50 85.71 92.19 90.70 91.18 88.46 K jcn_only_AA tomosyn,I_chrX_12527065_12527950,I_chrX_12531219_12531470,I_chrX_12534873_12541731,I_chrX_12548772_12549203 chrX + chrX_12525847_12529764;chrX_12525847_12527950 chrX_12525847_12527945 chrX_12525686_12525846 12.50 NA 10.00 13.73 NA NA 6.98 8.89 9.59 NA 16.67 9.76 5.00 10.34 NA 10.00 NA 7.41 6.06 8.70 7.41 NA 16.67 NA 9.52 12.50 14.29 NA NA NA 13.04 NA 10.00 15.91 33.33 13.04 NA NA NA 12.50 NA 16.28 20.00 NA NA NA 16.00 NA 13.89 NA NA NA NA NA 16.13 NA NA NA K jcn_only_AA CG31150,Hmt-1 chr3R - chr3R_11674738_11674860 chr3R_11674750_11674860 chr3R_11674861_11675363;chr3R_11674622_11674737 2.04 2.60 1.98 3.96 1.48 2.96 2.67 2.88 0.88 4.79 2.42 2.02 1.52 2.23 1.26 0.47 1.84 1.76 3.19 2.04 2.42 1.46 2.40 1.82 1.60 3.17 1.44 2.78 1.61 1.30 1.11 2.80 2.66 1.53 2.12 2.17 1.09 2.53 1.44 2.29 3.12 2.24 1.76 1.31 0.83 2.88 2.40 1.31 1.83 2.29 2.65 4.12 2.77 2.57 0.87 0.70 0.52 1.54 K intron_retention FucTB chr2L - chr2L_9429590_9430022 chr2L_9429589_9429590;chr2L_9430022_9430023 chr2L_9429412_9429589;chr2L_9430023_9430429 20.00 NA NA NA NA NA NA 8.70 20.00 NA NA 15.38 NA NA NA 36.36 NA NA NA 13.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 23.53 NA NA NA 20.00 NA NA 23.08 NA NA NA NA NA NA NA NA NA K alternative_acceptor Pino,I_chr2L_1118700_1128128,RI_chr2L_1123440_1128128,RI_chr2L_1128073_1128128 chr2L - chr2L_1117517_1128128 chr2L_1128073_1128128 chr2L_1128129_1128228;chr2L_1117444_1117516 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Pp1-87B chr3R - chr3R_8249909_8250332 chr3R_8250239_8250332 chr3R_8250333_8251639;chr3R_8249673_8249908 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.80 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.67 100.00 100.00 100.00 99.55 100.00 100.00 100.00 99.81 99.63 99.22 100.00 99.37 100.00 100.00 100.00 100.00 100.00 K intron_retention CG14785,CG14786,ns3 chrX - chrX_1349983_1350055 chrX_1349982_1349983;chrX_1350055_1350056 chrX_1349783_1349982;chrX_1350056_1350840 20.84 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG8128,I_chrX_15591697_15591816 chrX + chrX_15591697_15592065;chrX_15591697_15592355 chrX_15591697_15591816 chrX_15591597_15591696;chrX_15592356_15592720 5.13 6.67 5.26 5.56 NA 6.25 4.35 3.33 11.11 0.00 14.29 13.79 12.50 5.56 4.76 3.12 0.00 9.52 5.88 6.25 0.00 8.33 3.45 8.33 15.00 5.00 3.33 6.25 4.76 0.00 4.76 4.35 3.23 7.41 0.00 4.55 12.00 7.69 7.69 4.44 11.11 2.70 6.25 9.52 11.11 2.50 7.14 4.35 2.94 9.09 4.88 4.55 6.67 6.67 4.76 3.70 3.12 3.23 K alternative_donor CG3164,I_chr2L_125267_126140,I_chr2L_125267_128799,RI_chr2L_126228_126309 chr2L - chr2L_126228_128799 chr2L_126228_126309 chr2L_126141_126227;chr2L_128800_128899 1.96 1.96 1.71 3.54 1.32 1.28 2.27 1.81 1.37 1.31 0.93 1.33 1.45 1.18 1.39 2.54 1.17 1.32 1.79 2.01 1.63 2.89 2.08 2.82 3.20 1.03 4.13 4.71 2.67 2.45 1.64 2.97 2.74 1.61 2.90 3.31 1.84 1.47 2.12 2.78 3.03 1.37 1.55 1.87 2.27 2.40 2.61 1.92 1.22 4.38 2.94 1.94 1.89 3.80 1.01 3.33 3.73 2.05 K alternative_acceptor CG8798,I_chr3L_19602800_19602865 chr3L - chr3L_19604308_19604424 chr3L_19604362_19604424 chr3L_19604425_19604680;chr3L_19603902_19604307 9.52 3.85 10.00 16.33 4.35 4.55 13.16 15.15 10.00 2.94 19.05 12.00 19.05 22.22 6.67 12.50 10.71 6.67 16.67 14.00 10.71 4.65 8.51 7.89 0.00 3.33 11.76 5.77 6.12 6.82 5.41 10.53 5.08 8.89 13.33 5.88 8.70 6.25 2.86 4.65 7.50 10.91 6.25 10.87 12.00 9.52 15.00 8.47 16.67 15.79 5.56 16.67 4.76 12.50 12.12 9.52 14.81 7.69 K jcn_only_AD Lar,I_chr2L_19644636_19644695,REI_chr2L_19702035_19702145 chr2L + chr2L_19702026_19714888 chr2L_19702035_19714888 chr2L_19714889_19714989;chr2L_19701935_19702025 100.00 100.00 NA 96.88 95.65 100.00 97.06 100.00 97.18 97.67 100.00 98.00 NA NA 95.45 100.00 NA NA NA 100.00 NA 100.00 98.04 93.55 97.50 100.00 100.00 100.00 100.00 94.29 96.00 NA 100.00 100.00 NA 96.55 100.00 100.00 100.00 100.00 NA 93.48 NA 100.00 NA NA NA 88.00 100.00 NA 97.14 100.00 NA NA 96.15 NA NA NA K intron_retention CG31033,RI_chr3R_25658089_25658914 chr3R - chr3R_25653880_25653947 chr3R_25653879_25653880;chr3R_25653947_25653948 chr3R_25653795_25653879;chr3R_25653948_25654248 0.00 0.00 0.00 4.00 0.00 0.00 1.43 0.00 1.83 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 2.60 2.63 0.00 0.00 1.43 0.00 0.00 4.29 0.00 0.00 0.00 0.00 2.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 3.23 2.70 0.00 0.00 0.00 4.35 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 K alternative_acceptor CG7834,I_chr3R_25628402_25628511,I_chr3R_25632049_25632125,RI_chr3R_25658089_25658914 chr3R - chr3R_25628382_25628511 chr3R_25628402_25628511 chr3R_25628512_25628565;chr3R_25628302_25628381 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 2.49 1.15 0.00 0.00 0.00 1.45 0.63 0.00 0.67 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.86 0.00 0.49 0.00 0.00 0.58 0.00 0.51 0.48 0.56 0.31 0.00 0.54 0.00 K intron_retention drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389597_9389940 chr2R_9389596_9389597;chr2R_9389940_9389941 chr2R_9389497_9389596;chr2R_9389941_9389954 100.00 94.74 95.45 100.00 100.00 100.00 100.00 97.87 98.25 93.33 94.44 97.67 95.65 100.00 96.55 95.74 94.44 100.00 97.14 97.73 100.00 100.00 100.00 96.77 100.00 95.45 100.00 100.00 100.00 100.00 96.15 100.00 97.96 100.00 95.83 100.00 100.00 100.00 94.44 96.00 96.00 100.00 100.00 100.00 100.00 95.83 96.67 100.00 96.67 100.00 96.88 95.65 100.00 100.00 96.97 100.00 100.00 100.00 K alternative_acceptor sda,I_chr3R_22742285_22742350,RI_chr3R_22750984_22752737 chr3R + chr3R_22769923_22769989 chr3R_22769923_22769968 chr3R_22769779_22769922;chr3R_22769990_22770999 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Su(var)2-10,RI_chr2R_5006333_5006392 chr2R + chr2R_5006553_5008282;chr2R_5006553_5007804;chr2R_5006553_5008598 chr2R_5006553_5008568 chr2R_5006405_5006552;chr2R_5008599_5008637 1.61 2.27 2.38 2.50 3.03 3.03 1.52 2.44 1.20 0.00 0.00 0.00 2.70 3.57 2.33 2.00 3.45 3.57 2.56 0.98 3.23 0.00 1.28 0.00 0.00 5.26 1.72 0.00 0.00 0.00 6.45 1.96 1.47 1.67 0.00 1.69 0.00 0.00 0.00 1.06 1.75 1.35 2.94 0.00 0.00 1.69 0.00 1.47 1.43 1.75 1.61 0.00 2.33 0.00 2.08 1.85 1.79 1.35 K intron_retention CG14235,noncoding_24847,CG18809,noncoding_24848 chrX - chrX_19635199_19637988 chrX_19635198_19635199;chrX_19637988_19637989 chrX_19634765_19635198;chrX_19637989_19638057 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 90.00 100.00 NA 100.00 NA 94.74 100.00 88.89 NA 100.00 87.50 NA 100.00 100.00 91.67 100.00 94.12 100.00 NA 100.00 91.67 NA 100.00 100.00 88.89 100.00 NA 90.00 95.24 95.00 90.91 100.00 100.00 100.00 100.00 NA 93.33 100.00 100.00 100.00 100.00 93.75 K intron_retention CG8080,REI_chr2R_4979159_4979234,I_chr2R_4979276_4979936 chr2R - chr2R_4977527_4977587 chr2R_4977526_4977527;chr2R_4977587_4977588 chr2R_4977279_4977526;chr2R_4977588_4977990 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 3.57 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 1.64 0.00 3.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA RN-tre chr2R - chr2R_9873550_9875877 chr2R_9873601_9875877 chr2R_9875878_9875942;chr2R_9873495_9873549 99.38 100.00 99.04 99.44 100.00 100.00 100.00 99.38 98.88 100.00 98.36 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.03 96.83 99.35 99.23 99.12 98.41 100.00 99.08 100.00 100.00 98.86 100.00 99.02 96.36 98.72 98.77 100.00 99.15 99.00 99.32 97.99 100.00 100.00 100.00 100.00 100.00 99.31 100.00 98.36 98.06 98.68 99.31 100.00 98.39 100.00 99.17 99.07 100.00 97.06 K intron_retention CoRest,RF_chrX_19418197_19422673,F_chrX_19421868_19422673 chrX + chrX_19421868_19422667 chrX_19421867_19421868;chrX_19422667_19422668 chrX_19421807_19421867;chrX_19422668_19422856 7.41 12.50 20.00 16.67 NA NA NA 0.00 5.88 NA NA 19.05 NA NA 7.14 5.88 NA NA NA 11.11 NA 21.43 5.88 9.52 NA NA 7.14 NA 13.33 NA NA NA 25.00 NA 11.76 12.00 7.41 NA 5.00 7.14 NA 12.00 NA NA NA 0.00 15.38 10.00 7.41 0.00 NA NA NA NA NA 6.25 0.00 0.00 N jcn_only_AA CG8108,EI_chr3L_9859462_9859590,chr3L_9859594_9859878.0 chr3L + chr3L_9859462_9860377;chr3L_9859462_9859590 chr3L_9859462_9860413 chr3L_9859414_9859461;chr3L_9860414_9860844 90.18 94.96 89.04 82.89 93.06 90.41 81.82 94.44 90.54 86.21 92.11 90.18 87.27 94.12 92.73 85.19 95.52 97.14 96.97 83.94 84.34 94.12 87.85 88.71 88.89 82.35 90.18 83.33 85.37 88.89 47.26 84.31 88.78 91.00 89.66 75.00 90.22 90.15 94.26 87.39 90.00 94.77 91.30 85.53 92.54 94.51 89.74 91.38 88.41 92.86 88.27 87.88 99.04 96.19 91.67 94.50 97.79 98.78 K alternative_acceptor Rbcn-3A chrX - chrX_6137848_6137905 chrX_6137866_6137905 chrX_6137906_6138157;chrX_6137623_6137847 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG2316,I_chr4_208796_210623,I_chr4_209150_214298,I_chr4_209369_210623,I_chr4_209875_213969,RI_chr4_209875_214450,I_chr4_210688_213991,RI_chr4_210688_214450 chr4 - chr4_205241_205298 chr4_205241_205295 chr4_205175_205240;chr4_205299_205344 97.05 92.63 97.85 97.46 98.31 96.23 96.55 96.73 97.84 100.00 96.15 96.95 98.85 96.30 95.74 97.58 98.02 97.37 95.86 94.48 98.51 97.14 98.31 100.00 97.50 96.72 96.63 100.00 NA 98.04 96.69 98.18 97.44 93.71 95.65 97.37 100.00 97.96 95.92 95.96 93.33 96.79 97.73 96.88 100.00 100.00 96.83 96.77 95.76 97.65 96.36 93.55 92.31 100.00 98.06 96.05 96.95 98.48 K cassette eIF-4B,I_chr2RHet_2912605_2917250 chr2RHet + chr2RHet_2912605_2917250 chr2RHet_2912605_2915424;chr2RHet_2915525_2917250 chr2RHet_2915425_2915524 chr2RHet_2912544_2912604;chr2RHet_2917251_2917256 100.00 100.00 100.00 95.95 100.00 100.00 96.67 97.96 97.14 NA NA 100.00 NA 100.00 100.00 98.11 94.44 100.00 96.43 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 97.62 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 95.65 100.00 96.97 100.00 96.67 96.15 100.00 100.00 K intron_retention CG16791 chr3R - chr3R_17147142_17147517 chr3R_17147141_17147142;chr3R_17147517_17147518 chr3R_17146944_17147141;chr3R_17147518_17147834 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 8.62 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 2.13 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention rut,I_chrX_14718760_14718821 chrX - chrX_14686462_14687506 chrX_14686461_14686462;chrX_14687506_14687507 chrX_14685281_14686461;chrX_14687507_14688185 88.89 70.00 NA 45.45 88.89 70.00 NA 66.67 100.00 NA NA 87.50 NA 90.91 90.91 NA 87.50 66.67 75.00 84.00 NA 57.14 75.00 91.67 NA NA 90.00 NA 61.54 93.75 90.00 88.89 82.35 91.67 100.00 NA 100.00 72.73 92.86 100.00 NA 85.71 NA 94.12 91.67 100.00 87.50 84.00 92.31 NA 91.67 NA NA 87.50 81.82 NA NA 100.00 N jcn_only_AA CG8839,I_chr2R_8229288_8231538 chr2R - chr2R_8227962_8228070 chr2R_8228010_8228070 chr2R_8228071_8228645;chr2R_8227126_8227961 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention g,I_chrX_13628772_13629563 chrX - chrX_13627475_13627528 chrX_13627474_13627475;chrX_13627528_13627529 chrX_13627345_13627474;chrX_13627529_13627669 0.00 0.00 2.70 3.17 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.06 0.00 0.00 2.99 0.00 0.00 0.00 0.00 0.00 13.79 2.63 2.94 0.00 0.00 1.64 0.00 14.29 2.70 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 3.45 0.00 0.00 3.57 0.00 0.00 2.00 0.00 0.00 0.00 0.00 3.23 5.26 K alternative_donor gw,RI_chr4_679135_679703,I_chr4_679135_680299,RI_chr4_679135_680693,I_chr4_679135_681047,I_chr4_679135_681671 chr4 - chr4_679135_680185;chr4_679135_680594;chr4_679135_680270;chr4_679135_680503 chr4_679135_680546 chr4_679035_679134;chr4_680595_680603 0.00 0.00 20.00 6.67 0.00 0.00 0.00 13.04 4.76 NA 0.00 14.29 28.57 11.11 20.00 10.53 0.00 25.00 0.00 18.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 14.29 NA 0.00 16.67 0.00 0.00 0.00 0.00 NA 0.00 NA 7.69 0.00 0.00 NA 0.00 NA 0.00 6.25 NA 0.00 0.00 NA NA 0.00 NA NA NA K jcn_only_AD cryptocephal,noncoding_4181,I_chr2L_21311307_21311752,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21311033_21311752;chr2L_21311532_21311752;chr2L_21311215_21311752 chr2L_21311307_21311752 chr2L_21311753_21311852;chr2L_21310948_21311032 0.34 0.38 0.25 0.24 0.79 0.30 0.28 0.04 0.19 0.00 0.42 0.34 0.10 0.36 0.12 0.99 0.14 0.17 0.32 0.00 0.69 0.28 0.70 0.00 0.49 0.18 0.38 0.36 2.74 0.50 0.51 0.78 0.95 0.25 0.46 0.91 0.73 0.32 0.30 1.32 0.51 0.19 0.24 1.45 1.36 0.80 0.32 1.05 0.17 0.49 0.34 1.18 0.00 0.00 0.17 1.57 0.00 0.38 N alternative_donor CG10353,I_chrX_11775936_11778830,I_chrX_11778617_11778830,RI_chrX_11780885_11780988 chrX - chrX_11775936_11777234;chrX_11775936_11776058;chrX_11775936_11777220;chrX_11775936_11776142 chrX_11775936_11777133 chrX_11775836_11775935;chrX_11777235_11777654 40.48 50.00 38.24 40.00 44.12 51.61 56.00 62.79 53.26 46.67 68.00 55.00 60.87 57.14 35.00 51.02 51.72 54.29 52.38 41.89 50.00 34.21 39.02 40.00 32.00 40.00 48.65 23.53 11.11 36.67 35.71 27.78 38.64 48.21 33.33 32.43 42.86 43.33 36.36 42.31 36.36 37.70 47.06 36.36 17.39 40.00 50.00 34.48 45.45 33.33 47.22 42.11 36.84 35.29 29.03 39.13 47.83 40.48 K intron_retention tra2,REFI_chr2R_10491644_10491701 chr2R - chr2R_10490795_10490852 chr2R_10490794_10490795;chr2R_10490852_10490853 chr2R_10490666_10490794;chr2R_10490853_10491006 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 1.75 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention yrt chr3R - chr3R_9255492_9255914 chr3R_9255491_9255492;chr3R_9255914_9255915 chr3R_9254589_9255491;chr3R_9255915_9256472 0.00 NA 5.88 9.09 NA 5.26 3.23 0.00 11.76 NA 5.00 12.00 NA 14.29 0.00 0.00 12.50 NA 0.00 5.71 0.00 11.11 3.57 0.00 NA 5.56 4.35 NA 0.00 NA 0.00 5.00 0.00 0.00 0.00 NA 9.09 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.76 3.85 0.00 NA 0.00 0.00 0.00 0.00 4.00 0.00 K jcn_only_AA Pak3 chr3R - chr3R_12272857_12276688 chr3R_12272880_12276688 chr3R_12276689_12277858;chr3R_12272468_12272856 0.00 0.79 0.00 0.49 0.00 0.85 0.00 0.00 0.00 1.28 0.00 0.45 0.00 0.00 0.00 0.65 1.22 0.93 0.00 0.40 0.87 0.00 0.00 0.61 0.00 0.00 2.21 0.00 0.69 1.00 0.00 0.83 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.88 0.00 0.00 0.56 0.00 0.37 0.47 0.00 0.51 0.00 0.00 0.00 0.63 0.93 0.00 0.54 K alternative_acceptor Lap1 chr2R + chr2R_10823524_10823631;chr2R_10823524_10823599 chr2R_10823524_10823596 chr2R_10823191_10823523;chr2R_10823632_10823803 85.71 100.00 87.50 89.47 NA 75.00 75.00 81.25 84.62 66.67 NA 80.00 100.00 100.00 100.00 84.62 NA 100.00 100.00 92.86 100.00 81.82 81.82 85.71 62.50 100.00 92.31 62.50 100.00 80.00 85.71 NA 91.67 87.50 66.67 81.82 85.71 71.43 72.73 88.89 NA 76.92 85.71 80.00 100.00 100.00 NA 93.33 78.57 NA 90.91 100.00 NA 80.00 100.00 NA NA 85.71 K intron_retention I_chr3R_25875159_25875219,CG34317,CG7950,noncoding_20085,F_chr3R_25908044_25945850 chr3R + chr3R_25882757_25882861 chr3R_25882756_25882757;chr3R_25882861_25882862 chr3R_25882665_25882756;chr3R_25882862_25882884 6.90 4.00 13.21 8.86 17.65 8.00 10.53 7.14 15.52 3.45 19.05 11.67 7.89 5.88 10.00 2.33 0.00 7.32 0.00 5.61 0.00 3.45 8.11 8.33 3.57 6.15 12.12 14.29 6.52 0.00 6.58 5.77 7.27 6.98 12.50 2.70 10.00 8.33 0.00 4.60 9.33 8.64 10.81 0.00 7.46 4.90 6.90 3.88 8.33 7.69 6.00 15.00 4.08 0.00 4.48 5.71 3.08 3.35 K intron_retention psq,RI_chr2R_6449696_6467831 chr2R + chr2R_6501376_6501447 chr2R_6501375_6501376;chr2R_6501447_6501448 chr2R_6501273_6501375;chr2R_6501448_6501631 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 2.14 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.48 0.00 4.14 0.64 1.05 0.00 2.27 2.06 0.00 7.69 0.00 0.00 0.00 0.52 0.74 0.00 0.00 0.00 0.00 0.00 1.30 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 K intron_retention CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_239007_239071 chr4_239006_239007;chr4_239071_239072 chr4_238874_239006;chr4_239072_239137 0.00 0.00 0.00 6.67 0.00 0.00 0.00 2.65 1.10 0.00 0.00 1.30 4.11 2.86 2.38 1.57 1.79 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 0.00 1.22 1.49 5.56 4.44 0.00 0.00 0.00 0.00 1.32 5.17 4.65 0.00 1.80 0.00 0.00 1.62 0.00 1.80 0.00 1.41 1.41 0.00 1.41 2.42 0.00 N jcn_only_AD spir,I_chr2L_20334199_20334626,I_chr2L_20336550_20339058 chr2L + chr2L_20334731_20336286 chr2L_20334851_20336286 chr2L_20336287_20336404;chr2L_20334627_20334730 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG2519 chr3R - chr3R_1367559_1367613 chr3R_1367558_1367559;chr3R_1367613_1367614 chr3R_1367276_1367558;chr3R_1367614_1367924 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5191,E_chr3R_16391739_16398166,CG5412 chr3R + chr3R_16392332_16396323 chr3R_16392331_16392332;chr3R_16396323_16396324 chr3R_16392151_16392331;chr3R_16396324_16396371 9.52 17.65 14.29 17.65 NA 0.00 13.04 NA 14.81 6.67 NA 4.35 NA 0.00 21.43 NA NA NA 12.50 6.25 NA 10.71 0.00 9.09 12.50 NA 21.05 4.00 NA 0.00 NA NA 10.53 5.56 NA NA 12.00 6.67 10.00 16.67 14.29 6.45 NA 10.00 NA 9.52 4.76 5.88 10.71 0.00 10.53 NA NA NA 0.00 6.67 4.35 NA K intron_retention CG16817 chr3R + chr3R_5503809_5504283 chr3R_5503808_5503809;chr3R_5504283_5504284 chr3R_5503640_5503808;chr3R_5504284_5504370 0.54 1.33 0.54 0.63 0.78 0.00 0.67 0.38 0.45 0.00 0.41 0.00 0.00 0.69 1.28 0.30 0.00 0.65 0.00 0.40 0.00 1.22 0.60 0.00 0.00 0.61 1.68 2.59 3.07 0.57 0.00 0.00 0.00 1.12 0.81 0.37 0.98 0.71 0.71 0.44 1.45 0.86 0.40 0.31 0.00 0.00 0.74 0.00 0.46 0.67 1.80 0.00 0.86 0.90 0.49 0.25 0.71 0.60 K alternative_donor del chr2L - chr2L_21146886_21146948 chr2L_21146886_21146939 chr2L_21145134_21146885;chr2L_21146949_21147823 39.58 39.13 41.67 52.94 47.37 36.36 45.71 39.58 40.00 27.27 33.33 43.59 34.62 45.00 36.36 36.54 43.75 31.25 41.38 33.96 21.05 36.84 40.62 29.17 26.32 38.10 37.84 33.33 19.05 52.17 45.00 38.46 33.33 50.00 42.86 68.18 33.33 47.37 44.00 42.86 40.00 48.84 43.75 43.75 35.71 39.13 47.06 47.06 36.73 25.00 37.50 26.09 50.00 66.67 44.44 33.33 38.10 53.33 K intron_retention CG5514,RI_chr3R_23768206_23768306,Gp93 chr3R + chr3R_23767856_23768309 chr3R_23767855_23767856;chr3R_23768309_23768310 chr3R_23765429_23767855;chr3R_23768310_23768406 16.67 14.29 10.00 18.60 16.67 18.92 13.16 16.95 10.13 10.53 10.34 21.54 19.23 24.24 14.71 16.22 15.00 15.38 7.89 11.25 25.00 30.00 8.89 19.61 13.16 23.08 17.02 32.00 20.93 25.00 23.26 26.00 12.50 20.00 22.50 25.81 10.87 17.86 16.67 15.79 15.52 12.68 18.52 20.59 19.48 16.18 9.21 24.00 22.58 13.79 14.75 27.27 10.00 18.57 11.90 18.75 9.64 10.53 K intron_retention CG11033,I_chr3R_4879198_4879257,I_chr3R_4882567_4883651 chr3R + chr3R_4878298_4879257 chr3R_4878297_4878298;chr3R_4879257_4879258 chr3R_4878279_4878297;chr3R_4879258_4879357 67.95 NA NA 90.91 NA NA 63.64 61.11 62.50 NA 54.55 73.33 NA NA 91.67 63.64 NA 69.23 63.64 80.95 NA 83.33 64.71 64.29 NA 64.29 66.67 63.64 78.57 66.67 100.00 NA 75.00 75.00 NA 70.00 64.71 63.64 NA 66.67 NA 70.59 NA 75.00 NA NA NA 81.25 47.62 60.00 77.78 81.82 NA NA 83.33 NA NA NA K intron_retention CG4880 chrX + chrX_16781444_16781655 chrX_16781443_16781444;chrX_16781655_16781656 chrX_16780828_16781443;chrX_16781656_16782762 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG31431 chr3R + chr3R_17696730_17697693 chr3R_17696729_17696730;chr3R_17697693_17697694 chr3R_17696406_17696729;chr3R_17697694_17697862 47.53 58.33 54.55 42.86 42.86 35.71 43.33 50.00 45.16 NA 33.33 58.62 60.00 40.00 56.25 50.00 40.00 41.18 40.00 45.95 NA NA 50.00 46.15 52.94 93.33 54.55 50.00 70.00 NA 47.06 NA 50.00 48.00 NA NA 38.46 NA 35.71 62.50 41.67 42.86 58.33 52.63 NA 42.86 58.33 46.67 55.56 NA 43.75 50.00 NA NA 52.00 45.45 NA 36.36 K alternative_donor for,I_chr2L_3627621_3631522 chr2L - chr2L_3627636_3631522;chr2L_3627636_3631804;chr2L_3627636_3631962 chr2L_3627636_3631976 chr2L_3626337_3627635;chr2L_3631977_3632151 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 0.00 NA NA NA NA NA NA NA K alternative_donor Pdp1,RI_chr3L_7809841_7810536,I_chr3L_7813130_7818683,I_chr3L_7831960_7846282 chr3L - chr3L_7810763_7811177 chr3L_7810763_7811168 chr3L_7810537_7810762;chr3L_7811178_7811323 75.61 72.00 93.75 87.88 78.12 66.67 75.00 84.44 72.60 84.38 88.46 83.33 94.74 71.88 63.16 83.33 80.00 74.07 78.12 82.28 80.95 66.67 81.25 74.29 74.19 81.25 66.67 74.07 63.16 65.00 72.55 63.16 75.61 81.25 78.57 72.41 75.93 76.00 73.81 74.47 52.94 77.59 82.76 74.42 66.67 80.00 76.47 72.41 78.95 82.61 72.73 76.47 66.67 77.78 85.29 71.43 70.83 70.00 K jcn_only_AD CG15618,RI_chrX_19759043_19759112 chrX - chrX_19759043_19759117 chrX_19759043_19759112 chrX_19758943_19759042;chrX_19759118_19759212 10.46 6.45 3.70 NA NA 9.38 4.76 8.11 13.33 13.64 18.18 0.00 13.64 NA 10.71 3.03 26.92 3.85 10.00 7.50 0.00 NA 2.78 7.32 NA 14.29 16.00 4.35 NA 30.00 38.46 4.00 11.29 13.64 8.00 24.00 8.77 12.82 12.50 11.76 NA 8.33 NA 34.62 17.24 6.90 12.00 15.38 10.20 10.00 13.89 NA 13.79 NA 8.33 NA 6.67 11.11 K intron_retention Ide,I_chr3L_20366301_20366354,I_chr3L_20368443_20368519 chr3L - chr3L_20367665_20367714 chr3L_20367664_20367665;chr3L_20367714_20367715 chr3L_20367462_20367664;chr3L_20367715_20367943 9.52 5.26 11.76 12.20 0.00 8.57 7.14 6.25 9.52 23.08 6.67 8.20 0.00 7.41 10.81 14.29 0.00 4.35 2.78 5.56 6.90 57.14 18.87 7.50 26.47 12.12 15.69 21.74 23.53 6.90 18.00 5.00 13.16 11.36 9.52 30.00 13.04 4.35 18.75 10.87 20.69 5.88 6.25 10.34 0.00 17.65 0.00 11.76 6.52 17.14 9.30 18.75 11.11 0.00 6.52 9.52 3.85 0.00 K jcn_only_AD uzip,I_chr2R_20916008_20916468 chr2R + chr2R_20899732_20900155;chr2R_20899685_20900155 chr2R_20899701_20900155 chr2R_20900156_20900229;chr2R_20899603_20899684 96.10 94.64 98.33 93.94 97.22 92.59 90.62 94.32 96.30 95.12 100.00 94.00 94.74 93.02 96.36 96.15 98.36 97.73 95.45 92.54 100.00 97.14 97.98 98.67 96.97 95.74 96.23 95.65 92.16 100.00 96.77 100.00 96.30 97.98 95.40 96.61 91.67 100.00 94.59 94.74 98.04 95.45 90.00 98.51 97.96 98.44 95.24 92.50 94.00 97.56 100.00 94.67 91.18 95.65 94.19 96.10 100.00 94.92 K alternative_acceptor CG31431 chr3R + chr3R_17696730_17697680;chr3R_17696730_17697703 chr3R_17696730_17697693 chr3R_17696406_17696729;chr3R_17697704_17697862 6.06 6.42 4.10 7.77 6.25 6.48 9.09 4.74 5.13 2.70 7.14 5.94 3.92 4.69 5.11 5.92 6.45 6.30 6.06 5.19 3.30 2.27 8.70 5.21 9.30 4.30 8.70 8.20 9.09 6.98 6.80 7.84 5.49 5.88 6.35 4.76 7.87 5.45 6.06 5.00 5.97 6.84 6.10 7.44 1.72 6.06 5.19 5.26 5.96 7.46 6.84 5.94 11.63 3.92 6.99 6.17 5.33 6.90 K intron_retention Su(var)3-9,I_chr3R_11088444_11088825 chr3R - chr3R_11085106_11085171 chr3R_11085105_11085106;chr3R_11085171_11085172 chr3R_11084232_11085105;chr3R_11085172_11085408 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 1.84 1.62 2.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD I_chr3L_18664773_18665233,GNBP2,I_chr3L_18667579_18667644 chr3L - chr3L_18668078_18668437;chr3L_18668078_18668318 chr3L_18668078_18668478 chr3L_18667645_18668077;chr3L_18668479_18668494 4.00 0.00 2.78 2.82 3.45 0.00 4.60 2.60 7.69 NA 10.34 8.22 9.68 2.86 4.35 4.35 2.50 4.76 4.76 9.57 3.03 4.00 2.50 10.00 17.39 3.23 2.86 NA NA NA 10.71 4.00 0.00 3.08 NA 0.00 15.00 NA 16.13 10.00 NA 5.48 10.81 0.00 9.09 3.85 17.14 0.00 6.25 12.12 3.57 4.00 NA NA 8.89 3.23 0.00 2.78 K intron_retention Mtor,I_chr2R_7747557_7747819 chr2R + chr2R_7747569_7747819 chr2R_7747568_7747569;chr2R_7747819_7747820 chr2R_7747435_7747568;chr2R_7747820_7747919 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 1.03 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 6.06 0.73 0.00 0.00 4.65 2.50 2.97 0.00 2.99 0.00 0.00 1.28 0.00 2.35 0.00 0.00 0.00 0.65 1.19 2.06 1.48 0.00 0.00 0.00 0.81 0.00 2.22 0.83 0.83 1.71 1.67 0.00 0.00 0.00 0.00 0.88 1.36 K multi_cassette Pfk,I_chr2R_5999081_6000140,E_chr2R_6001157_6001630 chr2R + chr2R_6000676_6002421 chr2R_6000676_6001047;chr2R_6001157_6001630;chr2R_6001740_6002421 chr2R_6001048_6001156;chr2R_6001631_6001739 chr2R_6000521_6000675;chr2R_6002422_6002610 10.00 NA NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.00 6.67 NA 11.11 NA NA NA NA NA NA 5.56 8.33 0.00 NA NA NA NA NA NA 10.00 NA NA NA NA 10.00 NA NA NA NA NA NA NA K jcn_only_AD CG31612,E_chr2L_21775447_21821182,CG11630 chr2L - chr2L_21775447_21795393 chr2L_21775447_21795245 chr2L_21775400_21775446;chr2L_21795394_21795445 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention I_chr3L_17833072_17833135,CG5567,MED19 chr3L - chr3L_17837815_17837879 chr3L_17837814_17837815;chr3L_17837879_17837880 chr3L_17836777_17837814;chr3L_17837880_17837994 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 K cassette CG32521,I_chrX_21077138_21082106,I_chrX_21077612_21082713,EI_chrX_21080561_21082106,I_chrX_21080906_21082713,CREF_chrX_21082827_21152068,EF_chrX_21094675_21152068 chrX - chrX_21080906_21082713;chrX_21077612_21082713 chrX_21080906_21082106,chrX_21077612_21082106;chrX_21082302_21082713 chrX_21082107_21082301 chrX_21077512_21077611;chrX_21082714_21082813 100.00 99.78 100.00 100.00 100.00 100.00 100.00 99.59 99.84 99.70 99.29 100.00 100.00 99.49 100.00 100.00 100.00 100.00 100.00 99.85 100.00 99.37 100.00 100.00 100.00 100.00 99.72 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.68 99.85 100.00 99.84 100.00 100.00 100.00 99.43 99.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.62 100.00 99.86 100.00 K intron_retention wdb,I_chr3R_23394314_23406731,I_chr3R_23394314_23406794,I_chr3R_23394314_23407159,RI_chr3R_23394314_23407186,I_chr3R_23394314_23407412,I_chr3R_23394314_23407715,I_chr3R_23394314_23407721,RI_chr3R_23406048_23406731,RI_chr3R_23406048_23406794,I_chr3R_23406048_23406928,RI_chr3R_23406048_23407402 chr3R - chr3R_23394314_23407723 chr3R_23394313_23394314;chr3R_23407723_23407724 chr3R_23394214_23394313;chr3R_23407724_23407815 4.20 4.38 4.24 3.56 0.00 5.04 5.41 5.36 4.73 2.56 14.13 5.14 4.17 3.10 4.35 2.75 2.90 10.29 4.91 2.33 10.24 15.74 5.23 3.75 6.90 7.25 9.85 6.59 9.72 3.62 3.27 3.05 2.09 4.05 6.25 6.67 3.35 3.79 3.80 3.69 3.92 5.73 4.20 5.85 2.31 3.72 3.74 3.53 3.56 10.19 6.74 4.42 4.44 3.57 3.61 3.81 5.26 1.65 K jcn_only_AA Fmr1,I_chr3R_5930712_5930781,I_chr3R_5934794_5935245,I_chr3R_5934801_5935537 chr3R - chr3R_5930712_5930790 chr3R_5930733_5930790 chr3R_5930791_5930881;chr3R_5930612_5930711 98.64 98.94 98.64 98.49 98.43 99.33 100.00 99.39 99.43 96.67 98.71 97.64 98.31 99.41 98.19 98.76 97.22 98.68 99.07 99.28 99.54 100.00 98.28 97.55 97.30 97.33 98.69 96.63 97.22 98.01 98.11 97.94 99.38 99.01 97.86 98.09 99.64 98.31 98.91 98.92 100.00 98.57 99.38 99.45 98.66 96.55 97.42 98.04 98.33 99.30 99.15 98.44 100.00 98.55 98.80 96.00 97.58 99.49 K intron_retention CG5931 chr3L - chr3L_15955151_15955214 chr3L_15955150_15955151;chr3L_15955214_15955215 chr3L_15954976_15955150;chr3L_15955215_15958041 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8177,E_chr3L_9756800_9772650,I_chr3L_9773534_9773635,I_chr3L_9774319_9774602 chr3L + chr3L_9756807_9757000 chr3L_9756806_9756807;chr3L_9757000_9757001 chr3L_9756676_9756806;chr3L_9757001_9757161 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 NA 100.00 100.00 95.65 100.00 100.00 97.96 100.00 100.00 100.00 98.21 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 96.88 100.00 96.30 100.00 97.30 100.00 100.00 100.00 NA 100.00 100.00 97.30 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 K alternative_acceptor CG17598 chrX - chrX_21938828_21939091 chrX_21938831_21939091 chrX_21939092_21940557;chrX_21938690_21938827 96.00 100.00 100.00 96.30 94.44 93.33 100.00 97.44 95.00 92.59 100.00 95.35 86.96 100.00 92.31 95.83 94.12 95.45 94.12 98.18 94.74 100.00 96.55 97.14 96.00 100.00 93.33 85.19 96.77 96.77 95.00 94.59 96.08 96.30 96.15 100.00 100.00 96.55 93.18 95.65 93.02 89.19 88.24 93.55 100.00 98.11 100.00 93.88 92.11 96.00 97.14 100.00 95.65 96.88 100.00 97.78 95.35 91.67 K intron_retention RpL3,E_chr3R_7047964_7050565,I_chr3R_7048451_7049116,I_chr3R_7048452_7048540,I_chr3R_7048452_7049579,snoRNA:Me18S-A425,snoRNA:Psi28S-291,I_chr3R_7049970_7050189 chr3R + chr3R_7048452_7048540 chr3R_7048451_7048452;chr3R_7048540_7048541 chr3R_7048352_7048451;chr3R_7048541_7048564 98.33 100.00 100.00 97.62 100.00 100.00 100.00 100.00 98.51 100.00 100.00 98.00 100.00 100.00 100.00 94.12 100.00 94.44 100.00 98.57 100.00 70.83 100.00 97.62 100.00 95.65 98.15 95.56 94.44 94.44 90.91 90.00 96.67 97.44 100.00 97.30 97.87 100.00 97.56 100.00 100.00 98.33 100.00 96.15 97.22 97.30 96.43 100.00 98.46 97.78 97.50 100.00 96.15 95.65 96.97 100.00 97.62 100.00 K intron_retention mri,RI_chr3L_201061_201173,I_chr3L_212783_212843 chr3L + chr3L_201061_201173 chr3L_201060_201061;chr3L_201173_201174 chr3L_200990_201060;chr3L_201174_201273 66.67 NA 70.00 63.16 77.78 NA NA 70.00 76.92 NA NA NA NA NA 87.50 NA NA NA NA 63.64 NA 46.67 66.67 66.67 NA NA 90.00 72.73 NA NA 80.00 NA NA 70.00 NA NA 30.77 NA NA NA NA NA NA 60.00 NA 63.64 63.64 NA 73.33 63.64 50.00 NA NA NA NA NA 54.55 NA K intron_retention Edem1,I_chrX_1798310_1798525,I_chrX_1798315_1798577 chrX - chrX_1798310_1798525 chrX_1798309_1798310;chrX_1798525_1798526 chrX_1798215_1798309;chrX_1798526_1798625 92.86 NA NA 94.74 90.00 100.00 100.00 94.74 95.24 NA NA 92.86 90.00 100.00 100.00 100.00 88.89 NA 90.91 93.33 NA NA 92.86 90.91 NA 88.89 90.00 90.00 NA NA 100.00 NA 100.00 94.44 NA 90.00 NA NA 88.89 92.31 100.00 90.91 NA 100.00 100.00 100.00 92.31 84.62 92.31 NA 90.91 NA NA NA 92.86 87.50 87.50 NA K alternative_acceptor dre4,I_chr3L_1875590_1875651,F_chr3L_1877432_1877517 chr3L - chr3L_1875587_1875651 chr3L_1875590_1875651 chr3L_1875652_1875751;chr3L_1875490_1875586 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.51 0.00 0.00 0.00 1.69 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD MB8.chr3R.pasa.66,alpha-Est10,I_chr3R_3314337_3319450 chr3R - chr3R_3314337_3317062 chr3R_3314337_3314410 chr3R_3314237_3314336;chr3R_3317063_3317412 0.00 NA NA 50.00 NA NA NA 0.00 0.00 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor e(y)3,I_chrX_19530503_19530884,I_chrX_19530503_19531405 chrX - chrX_19530473_19531650 chrX_19530503_19531650 chrX_19531651_19532371;chrX_19530403_19530472 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 97.44 100.00 100.00 100.00 100.00 100.00 95.00 95.24 100.00 95.24 97.37 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 95.45 96.55 98.53 93.94 100.00 98.11 100.00 95.65 100.00 96.88 100.00 100.00 100.00 97.30 97.30 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 K intron_retention CG3209,RI_chr2R_19957766_19960227 chr2R + chr2R_19959748_19960227 chr2R_19959747_19959748;chr2R_19960227_19960228 chr2R_19959680_19959747;chr2R_19960228_19960327 33.33 27.27 29.63 54.55 25.00 41.18 42.31 40.00 35.29 43.48 24.32 17.74 77.78 40.91 40.00 32.14 12.00 10.29 56.00 22.09 17.65 70.00 34.62 25.81 35.48 24.14 43.59 41.38 40.74 45.16 23.53 26.09 45.45 20.45 54.55 26.67 23.88 43.18 26.15 41.07 55.00 31.91 50.00 30.77 22.86 26.19 33.33 53.85 33.33 57.14 34.88 43.75 17.07 26.83 27.27 29.41 20.37 27.03 K alternative_acceptor CG11006,F_chr3L_12799159_12799339 chr3L + chr3L_12799438_12800192;chr3L_12799438_12799955;chr3L_12799438_12800078;chr3L_12799438_12799967 chr3L_12799438_12799952 chr3L_12799340_12799437;chr3L_12800193_12800930 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA 0.00 NA 6.25 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA 0.00 K alternative_acceptor CG7203,cdc14,RI_chr2L_7806524_7806667 chr2L - chr2L_7803744_7804570;chr2L_7803044_7804570 chr2L_7803577_7804570 chr2L_7804571_7804915;chr2L_7802415_7803043 16.67 NA NA 33.33 NA NA NA NA 16.67 NA NA 40.00 NA NA 20.00 NA NA NA NA 40.00 NA 20.00 12.50 25.00 NA NA NA NA 16.67 NA NA NA 20.00 NA NA 28.57 7.69 11.11 16.67 NA NA 16.67 NA 16.67 14.29 33.33 NA 14.29 14.29 NA NA NA 9.09 NA NA 33.33 NA 33.33 K jcn_only_AD Tak1,I_chrX_20388150_20389255 chrX - chrX_20388150_20388725;chrX_20388150_20389255 chrX_20388150_20392250 chrX_20388050_20388149;chrX_20392251_20392299 57.76 61.78 56.64 65.45 57.02 61.05 56.11 65.41 54.78 57.28 56.64 64.47 57.61 53.85 55.05 50.88 56.73 49.69 57.76 62.00 66.67 54.23 57.32 66.67 54.81 54.72 63.58 48.94 62.77 63.83 58.52 63.92 64.13 57.80 60.19 55.56 67.36 65.06 62.71 62.30 62.89 58.10 67.62 56.64 73.97 52.56 47.78 54.17 63.72 54.35 45.20 51.52 53.12 60.20 53.64 63.87 48.05 65.57 K alternative_last_exon alpha-Spec,dlt chr3L - chr3L_1789102_1795198 chr3L_1793501_1795198 chr3L_1789017_1789101 chr3L_1789625_1793500 chr3L_1795199_1795295 18.69 25.58 22.22 10.87 27.50 27.03 9.68 13.48 16.03 23.08 18.92 14.41 12.50 13.24 33.33 12.23 17.31 30.23 13.64 17.35 23.53 16.85 16.82 22.73 10.34 15.00 25.86 38.18 12.73 17.14 14.71 29.03 26.92 14.85 13.64 6.06 31.37 37.50 35.42 19.79 12.73 19.23 16.07 17.57 42.86 22.06 26.53 14.78 18.69 17.14 19.10 16.13 28.00 45.00 18.33 26.19 36.36 25.00 K alternative_donor nes chr3L - chr3L_19253331_19253636;chr3L_19253331_19253609;chr3L_19253331_19253676;chr3L_19253331_19253648;chr3L_19253331_19253745;chr3L_19253331_19253764 chr3L_19253331_19253632 chr3L_19253215_19253330;chr3L_19253765_19253779 63.64 60.00 58.33 53.85 63.64 55.56 52.63 52.63 62.50 57.14 66.67 68.75 50.00 63.64 50.00 64.29 71.43 62.50 63.64 56.25 50.00 50.00 71.43 75.00 63.64 70.00 60.00 60.00 70.00 100.00 54.55 60.00 75.00 52.63 85.71 66.67 42.86 50.00 70.00 71.43 57.14 66.67 71.43 85.71 62.50 69.23 55.56 78.57 63.64 75.00 66.67 60.00 100.00 100.00 53.33 50.00 60.00 80.00 K alternative_acceptor aPKC,I_chr2R_10833552_10833654,RI_chr2R_10849347_10850391 chr2R - chr2R_10833552_10833654;chr2R_10832733_10833654 chr2R_10833596_10833654 chr2R_10833655_10833754;chr2R_10832714_10832732 95.65 94.44 95.00 95.74 87.50 93.33 97.96 98.00 94.83 80.00 90.91 95.24 95.65 96.43 94.12 94.55 94.74 88.24 96.30 97.14 93.33 100.00 94.29 92.00 100.00 92.31 95.24 90.00 95.65 100.00 95.83 85.71 96.43 96.00 96.00 96.00 100.00 100.00 92.86 97.62 92.59 94.74 86.36 96.15 88.24 97.44 100.00 92.86 97.78 96.30 96.97 100.00 92.31 100.00 95.45 100.00 100.00 95.12 K intron_retention CG1544 chr3R + chr3R_27025663_27026125 chr3R_27025662_27025663;chr3R_27026125_27026126 chr3R_27025464_27025662;chr3R_27026126_27026287 0.00 NA NA NA NA NA NA NA 5.00 NA NA NA NA NA 7.14 NA NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA NA NA K jcn_only_AD Shawn_Tyler,CG14216,Zw chrX + chrX_19558903_19558967 chrX_19558906_19558967 chrX_19558968_19559226;chrX_19558618_19558902 97.96 94.94 97.18 98.94 97.73 98.11 97.65 100.00 97.42 96.77 92.31 99.21 100.00 100.00 98.85 98.51 96.83 98.55 100.00 97.59 94.12 93.44 99.18 97.96 97.78 100.00 95.00 93.62 98.59 100.00 98.45 97.37 95.92 98.86 100.00 98.31 96.58 97.96 99.07 99.09 98.08 97.78 96.67 96.46 94.94 98.72 96.74 97.44 98.28 100.00 93.48 96.49 100.00 94.59 98.48 97.67 96.00 100.00 K intron_retention CG8929 chr2R + chr2R_16214899_16215831 chr2R_16214898_16214899;chr2R_16215831_16215832 chr2R_16214792_16214898;chr2R_16215832_16216526 16.91 14.81 17.14 15.91 15.79 15.38 17.65 19.51 18.75 NA 19.05 21.54 22.73 18.75 22.22 39.02 16.67 12.50 29.41 18.33 19.05 8.82 16.36 14.58 15.38 12.82 41.38 16.00 34.38 5.88 34.55 9.09 5.26 26.19 20.69 22.50 8.70 10.34 12.12 29.41 45.00 16.67 28.57 17.86 12.00 10.42 9.26 15.38 21.43 15.15 18.57 17.24 9.09 9.09 19.44 19.35 10.26 11.63 K intron_retention Hrb87F chr3R - chr3R_9484236_9484487 chr3R_9484235_9484236;chr3R_9484487_9484488 chr3R_9484184_9484235;chr3R_9484488_9484529 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.86 99.88 99.78 100.00 100.00 100.00 99.86 100.00 100.00 99.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Mlf,noncoding_7111,CEI_chr2R_11826763_11827279 chr2R - chr2R_11824832_11825183 chr2R_11824831_11824832;chr2R_11825183_11825184 chr2R_11824765_11824831;chr2R_11825184_11825384 28.57 34.21 31.25 7.14 26.67 18.18 72.22 42.31 28.05 22.22 22.73 36.07 52.63 39.13 37.93 31.71 41.38 56.25 34.62 28.21 30.00 23.88 23.81 35.42 24.00 7.41 28.57 35.42 33.33 21.21 28.57 28.57 10.87 30.23 32.00 20.93 21.74 31.82 32.20 34.04 17.65 40.00 36.84 26.83 14.29 24.39 22.22 23.08 29.82 20.93 29.27 35.71 23.33 33.33 27.03 24.32 24.07 7.41 N intron_retention Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16107821_16110644 chr3L_16107820_16107821;chr3L_16110644_16110645 chr3L_16107721_16107820;chr3L_16110645_16111208 100.00 NA NA NA NA NA NA NA 100.00 100.00 100.00 100.00 NA NA NA NA NA NA NA NA NA 58.62 100.00 NA NA NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 K intron_retention yuri,F_chr2L_15260838_15261717 chr2L - chr2L_15262627_15262969 chr2L_15262626_15262627;chr2L_15262969_15262970 chr2L_15262375_15262626;chr2L_15262970_15263128 0.87 2.44 1.41 1.82 0.00 1.77 0.00 1.92 2.50 0.00 0.00 3.11 7.87 2.56 1.75 3.25 0.00 0.68 1.82 2.15 1.79 1.42 2.48 0.62 0.00 0.00 1.68 0.00 0.00 0.67 3.20 1.37 0.60 2.72 2.26 0.00 1.54 0.00 0.00 1.89 0.00 1.48 3.03 0.52 0.00 0.47 2.40 0.00 1.56 0.00 1.20 0.00 0.00 0.87 0.00 0.00 0.00 0.00 K alternative_acceptor CG40042 chr2LHet - chr2LHet_168746_168843 chr2LHet_168796_168843 chr2LHet_168844_169120;chr2LHet_168463_168745 2.38 2.81 1.90 3.42 1.05 3.28 2.46 2.15 2.12 3.81 2.04 2.01 2.22 2.46 0.88 2.15 2.76 2.17 2.16 1.81 0.73 2.68 2.30 3.65 4.95 2.38 2.30 3.31 3.15 2.63 5.79 2.99 2.56 2.51 1.48 1.97 2.50 3.39 2.92 2.44 1.97 1.94 2.33 3.09 0.65 2.21 2.38 2.30 2.01 3.31 3.40 3.64 0.44 2.63 1.69 2.91 1.73 1.36 K alternative_acceptor I_chr2R_8626010_8636417,CG12488,I_chr2R_8637781_8637845 chr2R + chr2R_8637781_8637845 chr2R_8637781_8637842 chr2R_8637681_8637780;chr2R_8637846_8637945 92.86 89.29 86.21 93.33 94.74 89.66 90.91 93.10 94.29 94.44 86.96 90.00 94.74 94.44 96.55 94.12 92.86 81.82 94.74 95.65 94.12 100.00 83.78 97.30 83.33 92.59 91.18 96.00 96.00 93.75 92.86 86.96 90.70 89.19 91.67 81.48 91.30 93.55 94.23 98.15 93.55 93.75 85.71 86.96 83.72 92.11 95.65 91.67 88.37 92.86 91.67 85.00 93.10 96.67 93.55 96.67 88.89 92.31 N intron_retention Dscam,F_chr2R_3219886_3228832,F_chr2R_3226043_3235353,F_chr2R_3227948_3235353,F_chr2R_3228738_3235353,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3232857_3232989 chr2R_3232856_3232857;chr2R_3232989_3232990 chr2R_3232566_3232856;chr2R_3232990_3233013 100.00 NA NA 100.00 NA 100.00 NA 100.00 100.00 NA NA 52.17 NA NA NA NA NA NA NA 41.18 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N jcn_only_AA RpS20 chr3R + chr3R_16647996_16648154 chr3R_16647996_16648139 chr3R_16647888_16647995;chr3R_16648155_16648294 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.60 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG14425,Sxl,CG14425_Sxl,CEF_chrX_6984538_6992033 chrX - chrX_6986156_6991977 chrX_6986204_6991977 chrX_6991978_6992086;chrX_6985708_6986155 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA K intron_retention CG32373,CG12262 chr3L + chr3L_7713517_7713576 chr3L_7713516_7713517;chr3L_7713576_7713577 chr3L_7713160_7713516;chr3L_7713577_7714693 15.38 15.38 5.41 20.45 7.41 7.41 20.00 6.52 9.68 8.33 28.57 9.84 14.29 21.05 22.50 54.05 10.53 9.68 11.11 7.41 0.00 19.10 15.91 12.35 22.22 12.12 17.86 28.26 26.42 27.78 19.35 25.93 25.81 14.58 11.43 18.87 10.94 10.53 14.49 20.93 31.15 11.11 5.26 13.56 20.97 27.27 10.14 30.00 17.86 20.00 7.59 15.38 11.43 14.93 17.24 15.69 6.74 18.37 K alternative_acceptor CG11790,CG11791 chr3R + chr3R_20875669_20876344;chr3R_20875669_20876354 chr3R_20875669_20876902 chr3R_20875600_20875668;chr3R_20876903_20877278 19.23 26.47 10.00 21.88 25.81 10.71 17.31 12.28 15.00 44.44 7.69 12.28 29.73 6.90 10.53 11.76 6.45 32.43 16.28 12.31 4.00 10.87 23.08 21.62 8.33 8.82 11.11 23.08 22.86 18.18 9.76 25.00 17.50 10.34 19.35 12.50 29.27 24.00 21.21 27.85 28.57 14.29 12.00 25.93 35.56 24.14 28.57 37.74 8.47 32.00 25.58 19.23 46.88 12.90 19.15 30.77 35.42 53.52 K intron_retention sol chrX + chrX_21222794_21222886 chrX_21222793_21222794;chrX_21222886_21222887 chrX_21222781_21222793;chrX_21222887_21223512 83.33 75.00 90.00 87.50 88.89 100.00 88.89 95.00 73.08 NA 71.43 80.95 88.89 66.67 83.33 86.67 90.00 90.00 100.00 72.73 72.73 96.15 68.75 86.67 83.33 90.91 85.71 66.67 NA 84.62 75.00 NA 56.25 86.67 81.82 100.00 75.00 NA 90.00 77.78 NA 82.61 87.50 62.50 87.50 75.00 NA 57.14 83.33 NA 82.35 NA NA NA 64.71 NA NA 80.00 K alternative_donor CG13197,RI_chr2R_7580554_7581978 chr2R + chr2R_7580051_7581978 chr2R_7580554_7581978 chr2R_7581979_7582078;chr2R_7580004_7580050 6.67 NA NA 4.00 8.33 NA 5.00 4.76 3.45 NA 37.50 4.00 NA 7.69 0.00 3.70 NA 15.38 NA 3.33 18.18 9.09 11.11 10.00 6.67 5.88 11.11 18.18 23.08 NA 8.70 NA 8.33 4.55 NA 10.00 6.67 NA 5.00 4.76 0.00 4.76 10.00 6.67 NA 7.69 7.69 8.33 6.45 5.88 8.33 NA 8.33 NA 7.69 5.00 0.00 5.56 K intron_retention Iswi chr2R + chr2R_8524243_8524328 chr2R_8524242_8524243;chr2R_8524328_8524329 chr2R_8524226_8524242;chr2R_8524329_8524495 92.86 NA NA 93.33 NA NA 92.86 87.50 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA 92.31 NA NA NA NA NA NA NA NA NA K cassette CG42595,I_chr2RHet_3155517_3174709,RI_chr2RHet_3175044_3179353,RI_chr2RHet_3179300_3179586,I_chr2RHet_3179481_3179586 chr2RHet - chr2RHet_3175044_3179353 chr2RHet_3175044_3179091;chr2RHet_3179297_3179353 chr2RHet_3179092_3179296 chr2RHet_3174944_3175043;chr2RHet_3179354_3179453 100.00 100.00 100.00 100.00 95.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG4294 chr2R - chr2R_18488876_18489034 chr2R_18488875_18488876;chr2R_18489034_18489035 chr2R_18488842_18488875;chr2R_18489035_18489320 42.86 NA NA 31.25 NA NA 42.86 30.77 44.44 NA NA NA 54.55 NA NA 23.08 NA NA 45.45 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA 53.33 NA NA NA NA NA NA NA 43.75 NA NA NA NA NA NA 38.46 NA NA NA NA NA NA NA NA NA K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2389980 chrX_2387249_2388436;chrX_2388671_2389073;chrX_2389272_2389980 chrX_2388437_2388670;chrX_2389074_2389271 chrX_2387149_2387248;chrX_2389981_2390066 100.00 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA 75.00 NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA K intron_retention CG42348,I_chr3L_20149990_20151579 chr3L - chr3L_20149099_20151579 chr3L_20149098_20149099;chr3L_20151579_20151580 chr3L_20149001_20149098;chr3L_20151580_20151679 1.87 0.00 5.26 7.14 0.00 0.00 4.44 2.00 1.79 0.00 6.67 1.15 0.00 2.63 7.69 3.12 0.00 12.90 0.00 1.25 4.65 6.12 3.61 3.61 8.00 2.33 2.27 NA 5.71 1.92 0.00 0.00 2.67 2.63 0.00 5.77 1.94 4.12 2.02 0.00 0.00 2.88 0.00 0.00 0.00 0.00 0.00 1.72 0.00 1.92 0.00 0.00 0.00 0.00 3.51 2.04 1.82 0.00 K alternative_acceptor RluA-2,I_chr2L_10480906_10481097 chr2L + chr2L_10481571_10481621;chr2L_10481571_10481646 chr2L_10481571_10481629 chr2L_10481509_10481570;chr2L_10481647_10481707 0.00 NA 0.00 10.00 NA 14.29 5.26 0.00 0.00 NA 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 7.41 12.50 0.00 7.14 0.00 0.00 15.38 0.00 NA 16.67 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 5.00 0.00 5.56 0.00 0.00 0.00 5.56 0.00 10.53 0.00 8.33 0.00 0.00 0.00 18.18 0.00 16.67 0.00 0.00 K jcn_only_AA nAcRbeta-21C chr2L + chr2L_545307_545370 chr2L_545307_545348 chr2L_545131_545306;chr2L_545371_545564 0.17 0.29 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.50 0.17 0.38 0.00 0.26 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.98 1.04 0.00 1.05 0.00 0.00 1.36 4.19 0.00 0.37 0.00 0.00 0.00 0.68 0.91 0.71 2.28 0.51 0.43 0.40 0.00 0.38 0.90 0.00 0.93 0.16 3.67 0.66 0.00 0.00 0.38 0.65 0.80 0.21 0.30 K intron_retention Mi-2 chr3L - chr3L_19881205_19881331 chr3L_19881204_19881205;chr3L_19881331_19881332 chr3L_19875754_19881204;chr3L_19881332_19881575 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG13384 chr2L + chr2L_8384517_8384699 chr2L_8384541_8384699 chr2L_8384700_8384895;chr2L_8384486_8384516 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 K alternative_acceptor CG11337,I_chr3R_27230306_27230374,RI_chr3R_27230320_27230374 chr3R - chr3R_27230320_27230374;chr3R_27230306_27230374 chr3R_27230327_27230374 chr3R_27230375_27230410;chr3R_27230220_27230305 8.33 NA NA 8.33 NA NA 8.33 6.67 14.29 NA NA 10.00 NA NA NA 6.67 NA NA 11.11 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA 0.00 NA NA 12.50 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 9.09 NA NA NA K intron_retention CG32138 chr3L + chr3L_14062028_14062185 chr3L_14062027_14062028;chr3L_14062185_14062186 chr3L_14061908_14062027;chr3L_14062186_14062253 24.53 27.91 33.33 42.86 22.22 32.26 35.90 25.77 24.53 7.94 25.93 18.75 28.57 34.88 34.62 24.00 27.27 17.28 33.33 26.61 26.67 14.29 21.35 22.00 14.89 18.37 18.03 30.43 31.03 28.33 15.66 34.29 25.49 23.66 31.25 17.31 19.70 24.00 20.34 25.81 16.36 21.62 23.68 16.22 8.11 23.21 35.48 27.12 30.59 14.04 33.87 27.91 28.57 15.15 34.55 24.32 15.00 24.14 K jcn_only_AD eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20341925_20342041;chr3L_20341636_20342041;chr3L_20341509_20342041;chr3L_20341865_20342041;chr3L_20341486_20342041;chr3L_20341522_20342041;chr3L_20341751_20342041;chr3L_20341629_20342041;chr3L_20341598_20342041;chr3L_20341759_20342041 chr3L_20341530_20342041 chr3L_20342042_20342306;chr3L_20341482_20341485 0.00 0.00 1.67 0.00 0.00 0.00 0.00 1.64 0.70 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 1.79 4.35 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.76 NA 0.00 0.00 0.00 0.00 1.69 0.00 1.29 0.00 0.00 0.00 0.00 0.00 0.00 0.70 2.13 0.00 2.50 3.33 NA 1.02 0.00 1.54 1.23 K intron_retention CG13585,I_chr2R_20419710_20419962,E_chr2R_20420167_20420418 chr2R + chr2R_20419258_20419962 chr2R_20419257_20419258;chr2R_20419962_20419963 chr2R_20419190_20419257;chr2R_20419963_20420062 14.04 8.70 0.00 12.00 NA 33.33 25.00 13.79 16.67 14.29 33.33 20.00 17.65 NA 15.00 16.00 NA 36.84 7.69 19.61 26.32 16.67 14.29 9.52 21.43 12.50 18.18 NA NA 5.26 13.33 0.00 NA 26.09 14.29 11.11 9.68 5.88 15.38 9.09 NA 17.95 6.67 0.00 13.33 8.11 12.50 7.69 22.50 12.50 17.65 25.00 13.79 12.50 21.05 15.38 10.00 3.45 K intron_retention CG17574,I_chr2R_8737398_8737465 chr2R - chr2R_8737402_8737465 chr2R_8737401_8737402;chr2R_8737465_8737466 chr2R_8736915_8737401;chr2R_8737466_8737543 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1582,I_chrX_10792251_10792314 chrX - chrX_10793097_10793156 chrX_10793096_10793097;chrX_10793156_10793157 chrX_10792315_10793096;chrX_10793157_10793300 0.00 0.00 2.04 2.38 0.00 2.63 1.32 4.35 3.23 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 2.94 3.26 0.00 5.17 4.17 0.00 3.23 2.56 9.09 0.00 4.69 0.00 6.52 10.53 0.00 4.76 3.12 0.00 0.00 0.00 4.30 0.00 0.00 2.78 3.45 0.00 0.00 0.00 0.00 0.00 3.51 8.57 2.94 5.00 0.00 0.00 0.00 0.00 3.57 0.00 N intron_retention Gprk2 chr3R + chr3R_27259611_27259861 chr3R_27259610_27259611;chr3R_27259861_27259862 chr3R_27259181_27259610;chr3R_27259862_27259919 100.00 NA 100.00 100.00 NA NA 100.00 100.00 61.29 NA NA 72.73 100.00 100.00 100.00 100.00 100.00 NA 100.00 60.00 NA NA 100.00 100.00 100.00 NA 100.00 NA NA NA 66.67 NA NA 100.00 NA NA NA NA 100.00 100.00 NA 48.48 100.00 NA NA NA NA NA 64.52 NA 58.82 NA NA NA 50.00 NA NA NA K jcn_only_AA egr,I_chr2R_5970832_5970930,I_chr2R_5970999_5971058 chr2R + chr2R_5970832_5970930;chr2R_5970832_5970926 chr2R_5970832_5970908 chr2R_5970767_5970831;chr2R_5970931_5970998 78.19 75.17 78.37 82.93 76.49 74.67 82.88 80.78 78.28 75.00 74.20 77.16 80.31 78.97 77.55 82.12 75.21 80.08 80.18 79.27 78.19 75.57 77.86 76.54 80.16 81.37 71.38 82.70 77.05 79.07 80.19 80.28 79.52 80.43 78.22 69.84 73.01 76.50 76.36 75.91 83.40 77.25 76.76 80.37 75.56 78.36 77.61 79.17 81.69 73.07 76.83 77.98 75.48 75.64 82.86 79.21 76.63 78.72 K cassette CG7956 chr3R + chr3R_17350372_17351248 chr3R_17350372_17350806;chr3R_17351023_17351248 chr3R_17350807_17351022 chr3R_17350312_17350371;chr3R_17351249_17351485 8.57 8.57 6.25 4.12 6.45 4.11 4.90 4.84 7.84 4.88 9.62 7.69 3.70 5.63 6.32 7.95 7.94 10.77 8.33 7.10 5.26 1.61 7.23 10.00 13.51 9.80 7.55 10.00 18.75 7.46 16.39 12.77 12.79 8.76 13.46 13.64 8.57 9.26 12.90 8.55 10.53 8.00 7.94 11.29 12.50 9.76 7.27 14.74 6.45 11.76 9.76 10.00 16.00 9.09 6.49 10.20 7.14 10.20 K alternative_donor lig,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3955872_3957375;chr2R_3955586_3957375;chr2R_3955788_3957375 chr2R_3955517_3957375 chr2R_3957376_3957784;chr2R_3955509_3955516 96.30 100.00 96.55 96.30 98.25 100.00 96.00 98.53 98.62 87.50 100.00 97.83 100.00 97.50 97.40 95.92 98.18 96.36 94.23 97.96 97.73 96.00 62.50 80.00 75.00 96.43 50.00 57.14 73.91 88.89 92.54 100.00 94.44 97.78 100.00 71.43 94.44 90.00 90.00 87.50 87.50 97.60 98.00 92.86 100.00 100.00 NA 85.19 96.30 NA 25.00 87.50 100.00 NA 97.53 NA NA 96.30 K alternative_donor Pp2C1,I_chrX_4577968_4578285 chrX - chrX_4577968_4579144 chrX_4577968_4578285 chrX_4577868_4577967;chrX_4579145_4580826 2.56 1.92 0.00 9.09 2.13 2.70 0.00 2.00 2.06 2.50 5.00 4.76 5.56 7.14 3.23 4.35 0.00 0.00 0.00 1.61 5.26 3.85 0.00 3.70 0.00 0.00 3.51 6.67 3.85 2.56 6.25 9.52 2.13 1.56 0.00 3.23 1.69 1.47 2.47 3.03 0.00 1.27 0.00 0.00 0.00 8.70 0.00 2.86 3.03 5.00 1.72 0.00 4.55 4.35 3.23 5.26 4.35 3.57 K intron_retention Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11835112_11835668 chr2R_11835111_11835112;chr2R_11835668_11835669 chr2R_11834432_11835111;chr2R_11835669_11836215 84.38 76.60 79.17 83.61 84.44 88.10 95.24 91.84 90.32 86.36 82.86 79.71 75.00 79.31 87.23 80.00 90.62 85.71 88.24 80.52 84.38 85.19 83.33 82.05 91.18 97.50 79.22 81.48 90.20 81.54 89.47 83.02 82.95 86.79 76.92 82.05 78.45 85.51 84.15 85.71 93.22 83.67 89.29 89.66 80.72 81.52 84.13 88.46 90.62 72.97 86.59 84.48 79.31 81.48 89.74 79.22 89.80 90.91 K intron_retention CycD,I_chrX_15803256_15803313 chrX - chrX_15801833_15801891 chrX_15801832_15801833;chrX_15801891_15801892 chrX_15801764_15801832;chrX_15801892_15801960 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention WDR79 chr2L - chr2L_6126596_6126654 chr2L_6126595_6126596;chr2L_6126654_6126655 chr2L_6125873_6126595;chr2L_6126655_6126843 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 1.54 0.00 3.51 1.75 1.69 0.00 0.00 0.00 8.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention mib2 chr2L + chr2L_19038755_19038815 chr2L_19038754_19038755;chr2L_19038815_19038816 chr2L_19038085_19038754;chr2L_19038816_19038978 0.00 0.00 0.00 0.91 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 2.30 7.14 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 1.49 0.00 0.00 5.41 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor RpS3A,I_chr4_87533_87717,I_chr4_87549_87717,I_chr4_87549_87769 chr4 - chr4_87549_87717;chr4_87533_87717 chr4_87648_87717 chr4_87718_87817;chr4_87466_87532 74.06 73.10 67.01 67.27 89.71 66.99 88.14 NA 80.73 59.10 NA 76.97 NA 85.67 NA 71.06 NA 74.27 58.87 65.27 82.46 80.13 72.20 73.82 73.88 67.36 77.62 73.62 58.39 71.36 84.38 85.21 80.59 82.32 74.44 NA 67.39 57.80 81.91 88.00 84.25 82.43 NA 85.84 67.23 76.33 81.36 72.89 74.23 61.85 58.33 92.95 64.38 64.20 58.09 85.88 87.68 72.67 K alternative_donor RI_chrX_502548_513324,CG13366,I_chrX_508729_508806,I_chrX_509497_513324,I_chrX_509727_511407,I_chrX_509727_511477,noncoding_21186,I_chrX_509834_511407,CRE_chrX_509851_511307,I_chrX_510004_511307,I_chrX_510004_511407,I_chrX_513176_513324,I_chrX_513519_513631 chrX - chrX_509727_511477 chrX_509727_511407 chrX_509715_509726;chrX_511478_511507 85.71 NA NA NA NA NA NA NA NA NA NA 85.71 NA NA NA 87.50 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG9779,RI_chr3R_136377_136528 chr3R - chr3R_136371_136508 chr3R_136377_136508 chr3R_136509_136669;chr3R_136277_136370 99.03 98.70 98.00 98.73 98.55 100.00 98.88 100.00 98.58 100.00 100.00 100.00 97.83 97.67 100.00 100.00 97.83 100.00 98.21 99.29 100.00 97.70 98.31 100.00 100.00 98.31 98.51 95.65 100.00 98.18 100.00 97.78 100.00 97.40 96.77 100.00 98.58 98.90 98.68 97.22 100.00 99.03 97.83 100.00 100.00 100.00 98.90 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.08 97.89 99.20 98.04 K jcn_only_AA CG32549,I_chrX_18286136_18286367,I_chrX_18286289_18286367,RI_chrX_18301919_18303082 chrX - chrX_18286289_18286367;chrX_18286194_18286367 chrX_18286136_18286367 chrX_18286368_18286467;chrX_18286073_18286135 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.35 0.00 0.60 0.00 0.44 0.00 0.66 0.00 0.28 0.00 0.00 0.57 0.60 0.00 0.00 0.75 0.00 0.46 0.61 3.21 2.63 0.49 0.38 0.00 0.00 0.31 0.39 0.69 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 1.07 0.54 1.67 0.00 0.52 0.96 0.00 0.00 K cassette AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9003790_9005114 chrX_9003790_9004854;chrX_9005039_9005114 chrX_9004855_9005038 chrX_9003721_9003789;chrX_9005115_9005176 100.00 100.00 100.00 90.91 100.00 95.24 95.24 96.67 97.87 93.33 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 96.97 100.00 100.00 100.00 92.86 100.00 100.00 96.55 93.75 100.00 96.77 96.15 100.00 100.00 100.00 97.56 95.24 100.00 100.00 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 92.86 100.00 95.83 100.00 95.65 100.00 100.00 100.00 95.83 100.00 100.00 100.00 K alternative_acceptor CG18604,I_chr2R_14589693_14590032 chr2R + chr2R_14589693_14590032 chr2R_14589693_14590023 chr2R_14589593_14589692;chr2R_14590033_14590132 75.00 73.33 81.82 63.64 87.50 63.64 NA 73.33 70.97 80.00 NA 77.78 87.50 60.00 75.00 90.00 75.00 84.62 NA 80.77 60.00 71.88 81.82 69.57 91.67 NA 77.78 53.33 88.89 70.59 87.50 NA 92.86 85.71 75.00 81.82 63.33 86.67 68.00 64.71 NA 87.50 NA 71.43 66.67 92.31 69.23 80.00 89.47 75.00 81.82 NA 70.59 60.00 61.54 72.73 66.67 NA K alternative_acceptor GstD10,RI_chr3R_8191329_8191412,I_chr3R_8192634_8193249 chr3R - chr3R_8191305_8191412 chr3R_8191329_8191412 chr3R_8191413_8191512;chr3R_8191229_8191304 6.67 NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor twe,I_chr2L_16267018_16267422 chr2L - chr2L_16261506_16261616 chr2L_16261506_16261590 chr2L_16259416_16261505;chr2L_16261617_16261877 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention cnn,I_chr2R_9331192_9331257,I_chr2R_9333096_9336812,RI_chr2R_9334834_9336719,I_chr2R_9347031_9370659 chr2R - chr2R_9327834_9327896 chr2R_9327833_9327834;chr2R_9327896_9327897 chr2R_9327766_9327833;chr2R_9327897_9330021 0.00 0.00 0.00 2.86 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N cassette ena chr2R + chr2R_15029860_15046238 chr2R_15029860_15039409;chr2R_15039533_15046238 chr2R_15039410_15039532 chr2R_15029730_15029859;chr2R_15046239_15046560 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 79.49 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Tre1,I_chrX_5568743_5568799,I_chrX_5569518_5570588 chrX - chrX_5568743_5568803 chrX_5568742_5568743;chrX_5568803_5568804 chrX_5568643_5568742;chrX_5568804_5568899 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.45 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 K alternative_acceptor gd,I_chrX_11881464_11881506 chrX - chrX_11881455_11881506 chrX_11881464_11881506 chrX_11881507_11881606;chrX_11881364_11881454 4.25 NA NA NA NA NA 0.00 NA 6.67 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 NA 5.26 NA 3.23 NA 6.67 NA 5.88 5.26 7.69 NA 0.00 0.00 NA 5.56 NA NA 0.00 NA NA 0.00 NA NA 5.88 7.14 NA NA NA NA NA 5.88 K intron_retention CG34123,RI_chr2R_11160894_11162043,I_chr2R_11167854_11168411 chr2R - chr2R_11152866_11153135 chr2R_11152865_11152866;chr2R_11153135_11153136 chr2R_11152728_11152865;chr2R_11153136_11153342 9.68 7.41 0.00 3.39 4.17 3.85 6.90 11.76 8.47 NA 11.76 11.11 NA 28.57 12.12 9.68 0.00 0.00 23.08 6.82 9.52 19.05 6.90 22.73 NA 0.00 12.50 NA 5.56 7.14 6.67 18.18 12.50 20.59 10.53 6.06 10.71 20.00 10.00 20.00 NA 6.98 17.65 10.71 0.00 13.64 8.33 2.94 14.29 17.65 15.38 0.00 0.00 NA 10.71 5.88 10.34 0.00 K intron_retention CG2225 chr2L - chr2L_21668237_21668292 chr2L_21668236_21668237;chr2L_21668292_21668293 chr2L_21668106_21668236;chr2L_21668293_21669233 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA NA 1.59 0.00 0.00 0.00 0.00 0.00 NA 0.00 9.09 8.33 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG2246,I_chr3R_26421344_26425985,I_chr3R_26421349_26427017 chr3R - chr3R_26419539_26419834 chr3R_26419572_26419834 chr3R_26419835_26419891;chr3R_26419427_26419538 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention dNAT1,CG13319,RI_chr2R_8812301_8816468 chr2R + chr2R_8808365_8808489 chr2R_8808364_8808365;chr2R_8808489_8808490 chr2R_8805500_8808364;chr2R_8808490_8810315 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.80 0.00 0.32 0.00 0.00 0.60 0.85 0.00 0.00 0.40 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention mmd chrX - chrX_15848478_15856018 chrX_15848477_15848478;chrX_15856018_15856019 chrX_15848319_15848477;chrX_15856019_15856024 100.00 NA NA NA 100.00 100.00 100.00 NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 64.71 NA NA NA NA NA NA NA NA NA K alternative_acceptor Pof chr2R + chr2R_20556998_20557050;chr2R_20556998_20557046 chr2R_20556998_20557144 chr2R_20556952_20556997;chr2R_20557145_20557370 0.00 0.00 16.67 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA 0.00 NA 9.09 0.00 NA 0.00 11.11 NA NA NA NA NA NA NA NA NA 11.11 NA NA 8.33 0.00 0.00 NA NA 0.00 NA NA NA 0.00 16.67 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.00 NA 0.00 K jcn_only_AA CG9104,CG9099 chrX - chrX_16777969_16778096 chrX_16778035_16778096 chrX_16778097_16778358;chrX_16777528_16777968 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.39 98.88 100.00 95.83 98.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.13 97.56 100.00 98.11 100.00 100.00 97.83 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 92.73 98.78 98.39 98.57 98.97 97.96 100.00 100.00 100.00 98.21 96.10 100.00 100.00 97.18 100.00 100.00 95.24 97.78 98.04 98.31 100.00 100.00 100.00 K intron_retention iPLA2-VIA chr3L - chr3L_9856363_9856420 chr3L_9856362_9856363;chr3L_9856420_9856421 chr3L_9856063_9856362;chr3L_9856421_9856716 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17333,CG2202 chrX + chrX_10745007_10745093 chrX_10745006_10745007;chrX_10745093_10745094 chrX_10744067_10745006;chrX_10745094_10745674 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.52 6.67 2.78 0.00 0.00 0.00 0.00 6.56 8.33 2.70 0.00 0.00 3.85 2.63 0.00 4.76 7.14 0.00 0.00 1.43 3.51 4.76 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.00 0.00 0.00 4.17 0.00 0.00 K alternative_last_exon app,RI_chr3L_12201038_12201989,I_chr3L_12259361_12259754 chr3L - chr3L_12201038_12206192 chr3L_12205868_12206192 chr3L_12199329_12201037 chr3L_12204371_12205867 chr3L_12206193_12206397 85.71 90.00 88.89 77.78 77.78 83.33 83.33 87.50 94.44 85.71 87.50 93.33 62.50 83.33 88.89 77.78 87.50 83.33 80.00 92.86 85.71 93.33 94.12 92.31 88.89 87.50 91.67 92.31 80.00 90.91 85.71 83.33 92.31 91.67 85.71 92.31 94.74 81.25 94.44 80.00 85.71 93.75 83.33 83.33 75.00 81.82 77.78 84.62 93.33 83.33 92.31 77.78 63.64 75.00 87.50 77.78 87.50 80.00 K jcn_only_AD Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045251_16046104;chr3L_16045316_16046104;chr3L_16045275_16046104 chr3L_16045277_16046104 chr3L_16046105_16046204;chr3L_16045216_16045250 2.27 2.27 1.85 1.98 13.16 1.54 3.75 2.80 2.50 0.00 0.00 1.83 3.17 0.00 2.99 3.37 5.26 2.63 2.41 2.63 0.00 0.00 2.74 4.35 0.00 1.28 1.69 0.00 3.12 4.05 4.05 0.00 1.22 1.59 2.17 0.00 2.38 0.00 0.00 0.00 4.76 3.33 0.00 3.51 2.56 0.00 0.00 2.63 1.82 0.00 3.85 3.70 4.00 NA 4.88 2.78 NA 0.00 K intron_retention Vps13,I_chr2R_3464510_3464571 chr2R + chr2R_3454389_3454650 chr2R_3454388_3454389;chr2R_3454650_3454651 chr2R_3454371_3454388;chr2R_3454651_3454869 7.55 18.75 14.29 10.53 NA NA 13.04 8.33 7.41 NA NA 8.33 NA NA 0.00 0.00 NA 0.00 0.00 7.69 13.33 9.09 5.56 NA NA 18.75 NA NA 6.25 0.00 16.67 NA 15.79 8.33 NA NA 9.68 NA NA 0.00 NA 0.00 NA 7.41 NA NA NA 5.00 5.71 NA NA NA NA NA 0.00 NA NA NA K intron_retention CAP-D2,E_chr3R_25501928_25504637 chr3R + chr3R_25501579_25501655 chr3R_25501578_25501579;chr3R_25501655_25501656 chr3R_25501398_25501578;chr3R_25501656_25502127 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 12.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 3.45 NA NA NA 0.00 NA NA NA K alternative_acceptor rl,I_chr2RHet_199154_207044,RI_chr2RHet_203476_203577,RI_chr2RHet_203592_207044,I_chr2RHet_232696_247338,RI_chr2RHet_240197_247338 chr2RHet + chr2RHet_198817_198973;chr2RHet_198817_198981 chr2RHet_198817_198964 chr2RHet_198804_198816;chr2RHet_198982_199153 57.14 NA 66.67 65.62 60.00 44.44 50.00 61.11 78.57 NA NA 50.00 60.00 69.23 NA 67.74 57.14 66.67 70.59 65.22 50.00 NA 71.43 50.00 57.14 71.43 60.00 NA NA 44.44 45.45 NA NA 48.28 80.00 57.14 44.44 NA 54.55 NA NA 62.50 NA NA NA 55.56 44.44 NA 51.72 57.14 71.43 66.67 NA NA 55.56 NA NA 57.14 K alternative_acceptor CG5261,I_chr2L_7428611_7428877 chr2L + chr2L_7428680_7428877;chr2L_7428680_7428925 chr2L_7428680_7428778 chr2L_7428612_7428679;chr2L_7428926_7428977 0.99 0.00 0.00 1.25 0.00 0.00 0.00 1.28 0.78 2.08 0.00 1.01 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.59 0.00 4.82 2.27 0.00 2.13 0.00 1.54 1.64 1.47 1.35 4.76 2.86 1.43 1.32 2.17 0.00 0.93 1.28 0.99 2.11 0.00 0.79 2.78 2.70 0.00 0.00 1.01 1.79 0.00 1.96 0.00 2.86 0.00 1.79 0.00 0.00 1.10 1.67 K intron_retention CG5514,E_chr3R_23764745_23767416,Gp93 chr3R + chr3R_23764641_23764698 chr3R_23764640_23764641;chr3R_23764698_23764699 chr3R_23764270_23764640;chr3R_23764699_23764744 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 NA NA 1.79 0.00 0.00 0.00 2.38 0.00 0.00 0.00 3.30 0.00 2.78 2.27 0.00 0.00 0.00 4.55 0.00 0.00 3.23 0.00 6.90 4.40 0.00 0.00 6.06 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 2.86 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 K jcn_only_AA Bsg25D chr2L - chr2L_5273555_5274018 chr2L_5273591_5274018 chr2L_5274019_5275763;chr2L_5273161_5273554 88.82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 95.83 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 81.82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD MED14,CG12030 chr3L + chr3L_594846_594915 chr3L_594852_594915 chr3L_594916_595283;chr3L_594354_594845 0.00 3.70 0.00 3.23 2.08 0.00 0.00 1.23 1.69 0.00 2.38 1.12 0.00 2.86 8.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 7.14 0.00 0.00 2.13 0.00 1.92 0.00 0.00 4.11 1.56 9.80 0.00 0.00 3.77 3.85 2.50 0.00 0.93 1.96 0.00 0.00 3.03 3.23 0.00 3.80 2.08 0.00 0.00 NA NA 0.00 0.00 0.00 3.03 K cassette CG18854,RI_chr2L_9789598_9789790,I_chr2L_9789694_9789790,REI_chr2L_9789718_9789790,I_chr2L_9790307_9790615,I_chr2L_9790310_9790556 chr2L - chr2L_9789616_9789790 chr2L_9789616_9789674;chr2L_9789740_9789790 chr2L_9789675_9789739 chr2L_9789594_9789615;chr2L_9789791_9789832 24.05 22.87 24.09 39.84 22.78 20.48 20.84 26.23 22.69 29.20 19.44 20.18 31.20 25.93 23.08 18.63 26.86 25.27 26.70 19.67 17.65 34.42 10.70 32.11 30.86 12.79 28.64 29.55 13.01 16.42 23.95 20.41 20.45 24.05 21.79 7.72 27.75 27.92 29.77 25.82 18.57 21.35 27.50 26.53 17.20 21.65 30.43 18.87 20.26 28.45 28.70 27.82 17.05 27.34 25.49 24.81 24.79 15.97 N intron_retention CG15706 chr2R - chr2R_12112831_12114161 chr2R_12112830_12112831;chr2R_12114161_12114162 chr2R_12112612_12112830;chr2R_12114162_12114241 100.00 100.00 100.00 100.00 NA 100.00 100.00 47.62 52.00 NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 65.38 100.00 100.00 100.00 NA NA 100.00 55.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA 100.00 100.00 NA 100.00 100.00 NA NA NA 100.00 NA 100.00 NA 62.50 NA 100.00 NA 100.00 NA 100.00 NA K intron_retention exba,I_chr3R_1425087_1425925,I_chr3R_1425813_1426009,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1425890_1426009 chr3R_1425889_1425890;chr3R_1426009_1426010 chr3R_1425790_1425889;chr3R_1426010_1426024 88.24 85.71 87.50 76.47 92.31 90.00 95.24 81.40 83.33 88.89 80.95 97.62 94.44 88.24 77.78 75.47 95.45 86.96 90.91 86.54 90.00 100.00 81.08 92.00 92.31 93.75 88.24 94.44 92.31 76.47 88.89 94.74 100.00 97.37 80.95 86.67 90.48 84.62 93.75 90.00 94.44 88.57 73.91 76.67 94.44 80.65 78.95 96.30 79.17 83.33 81.48 80.77 78.95 85.71 88.89 77.78 87.50 81.82 K cassette CG14619,RI_chrX_21860097_21868647,I_chrX_21865109_21865522,I_chrX_21869837_21869915 chrX + chrX_21860097_21868647 chrX_21860097_21867984;chrX_21868212_21868647 chrX_21867985_21868211 chrX_21859997_21860096;chrX_21868648_21868747 97.83 98.72 97.33 98.86 95.16 98.39 98.88 96.74 95.76 100.00 100.00 99.29 93.33 98.00 98.63 97.06 95.74 98.28 98.15 97.48 98.08 97.27 96.77 96.91 97.30 97.96 96.43 93.44 85.45 96.25 92.96 97.22 98.57 98.02 97.14 98.63 99.38 97.83 99.29 96.40 97.30 96.43 100.00 97.67 98.11 98.55 95.00 98.33 97.46 98.21 99.12 96.36 98.15 98.18 97.10 95.31 98.21 100.00 N cassette brat,I_chr2L_19134277_19143634,EI_chr2L_19145845_19145958,RI_chr2L_19145845_19146761 chr2L + chr2L_19134277_19166084 chr2L_19134277_19145793;chr2L_19145845_19166084 chr2L_19145794_19145844 chr2L_19134177_19134276;chr2L_19166085_19166125 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 68.42 NA NA 100.00 100.00 100.00 100.00 58.82 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K jcn_only_AA F_chr3RHet_1879085_1900358,Alg-2 chr3RHet - chr3RHet_1898928_1898983;chr3RHet_1898895_1898983;chr3RHet_1898919_1898983 chr3RHet_1898930_1898983 chr3RHet_1898984_1899090;chr3RHet_1898558_1898894 96.07 96.05 92.65 96.35 98.36 96.94 97.80 95.15 95.60 100.00 97.30 94.44 94.70 95.68 94.35 95.56 96.04 96.91 96.10 97.67 96.20 96.15 93.51 89.36 93.15 92.92 100.00 90.48 92.54 97.62 94.17 100.00 NA 94.66 94.74 96.30 90.57 95.45 97.80 96.51 91.11 97.07 97.75 95.45 83.72 97.70 97.67 96.77 94.16 95.60 97.50 92.22 96.83 98.21 94.48 98.23 96.95 97.22 K intron_retention zip,I_chr2R_20878796_20879147 chr2R - chr2R_20879222_20879332 chr2R_20879221_20879222;chr2R_20879332_20879333 chr2R_20879148_20879221;chr2R_20879333_20879496 68.34 NA NA NA NA NA 58.33 77.78 90.00 NA NA 66.67 NA NA NA NA NA NA NA NA NA 23.81 NA NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA 53.85 NA NA NA NA NA NA NA NA 70.00 NA NA NA NA NA NA NA NA NA K multi_cassette Mlf,noncoding_7111,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CE_chr2R_11826384_11826741,I_chr2R_11826763_11826990,CEI_chr2R_11826763_11827279 chr2R - chr2R_11824089_11827414 chr2R_11824089_11825183;chr2R_11825385_11825951;chr2R_11826484_11826541;chr2R_11826763_11827414 chr2R_11825184_11825384;chr2R_11825952_11826483;chr2R_11826542_11826762 chr2R_11823989_11824088;chr2R_11827415_11827523 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG9795,EI_chr3R_145575_147566,RI_chr3R_145613_145675 chr3R + chr3R_145613_145675 chr3R_145612_145613;chr3R_145675_145676 chr3R_145513_145612;chr3R_145676_145775 94.74 91.30 97.67 97.62 86.67 93.02 93.06 89.13 94.74 100.00 94.74 94.29 87.04 95.12 94.03 97.78 95.24 92.68 89.58 92.05 98.61 94.12 97.92 92.86 96.43 97.83 92.31 96.97 97.78 92.86 92.16 100.00 96.30 89.86 94.12 96.00 97.22 94.87 96.30 89.23 100.00 95.35 88.37 88.46 87.76 94.23 96.08 95.65 86.96 91.49 95.45 97.22 97.14 95.24 93.75 95.74 96.39 93.75 K jcn_only_AD CG8839,I_chr2R_8229288_8229488,I_chr2R_8229288_8231538 chr2R - chr2R_8229288_8231968;chr2R_8229288_8232025;chr2R_8229288_8231966 chr2R_8229288_8231964 chr2R_8229188_8229287;chr2R_8232026_8232112 19.51 20.79 17.67 19.04 17.97 17.22 23.91 16.81 22.49 31.46 18.23 13.26 22.40 17.68 17.80 20.42 19.50 21.82 16.92 20.69 19.05 16.33 22.64 16.95 20.00 16.39 19.51 22.22 20.61 23.46 14.08 19.33 21.88 17.34 25.49 22.50 26.15 20.25 19.72 11.76 26.13 17.75 16.08 30.77 18.67 18.75 27.27 26.21 17.86 17.91 23.85 20.00 24.51 25.93 14.65 16.30 18.80 28.43 K jcn_only_AD RpL28,RI_chr3L_3221710_3221877,I_chr3L_3221982_3222744,snoRNA:Or-CD11c,snoRNA:Or-CD11b chr3L - chr3L_3221982_3222787;chr3L_3221982_3222152;chr3L_3221982_3222574;chr3L_3221982_3222926;chr3L_3221982_3222847 chr3L_3221982_3222365 chr3L_3221882_3221981;chr3L_3222927_3222958 10.20 15.20 6.05 2.73 6.92 5.54 27.03 3.52 15.05 12.03 7.06 13.18 16.91 20.10 4.10 18.50 5.81 4.86 2.11 5.69 7.14 10.66 15.97 22.70 33.33 17.41 33.88 34.23 4.32 7.25 4.09 2.74 0.45 3.93 10.96 14.84 14.52 17.82 13.49 10.20 5.58 4.45 4.39 13.16 2.09 3.91 18.18 2.43 5.25 18.75 13.01 27.68 4.10 11.93 4.75 20.69 26.09 1.26 N jcn_only_AA Gprk2 chr3R + chr3R_27259611_27279032 chr3R_27259611_27259861 chr3R_27259181_27259610;chr3R_27279033_27279128 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 31.48 NA 0.00 13.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.51 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 25.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 31.17 NA 0.00 NA 0.00 0.00 0.00 26.32 NA 26.47 NA 0.00 NA 35.00 NA 0.00 0.00 N alternative_acceptor Cct5 chr2R + chr2R_8064224_8064282 chr2R_8064224_8064264 chr2R_8063242_8064223;chr2R_8064283_8065030 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 1.04 0.24 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8446 chr2R + chr2R_12085844_12085989 chr2R_12085843_12085844;chr2R_12085989_12085990 chr2R_12084512_12085843;chr2R_12085990_12086451 0.84 0.99 0.00 1.26 0.00 0.00 0.66 1.85 1.55 0.00 0.00 2.38 2.91 1.01 0.85 0.00 0.00 0.00 0.98 1.01 0.00 5.47 1.64 0.84 0.00 0.79 4.58 1.61 3.42 0.00 1.63 0.00 1.16 0.00 2.04 2.11 1.22 0.00 2.60 1.52 0.62 1.05 0.00 0.70 0.00 0.00 1.54 1.52 2.35 0.75 0.00 0.00 0.00 0.91 0.00 0.00 0.00 1.17 K intron_retention Jhebp29,RI_chr2R_20857941_20857992,RI_chr2R_20857941_20858127 chr2R + chr2R_20857941_20858182 chr2R_20857940_20857941;chr2R_20858182_20858183 chr2R_20857841_20857940;chr2R_20858183_20858227 97.62 96.72 98.68 99.03 97.96 95.71 98.95 99.06 100.00 96.97 98.15 96.69 98.21 95.00 96.51 97.87 97.96 93.55 97.22 95.77 98.44 65.71 97.22 97.62 97.56 98.73 97.53 97.62 97.83 97.56 100.00 96.15 74.39 99.02 97.37 97.87 98.39 100.00 100.00 94.57 93.24 99.24 96.15 100.00 93.85 92.31 98.90 100.00 96.04 98.46 98.70 97.62 96.83 94.05 100.00 95.00 97.58 96.00 K intron_retention Cctgamma chr3R + chr3R_12473420_12473557 chr3R_12473419_12473420;chr3R_12473557_12473558 chr3R_12473322_12473419;chr3R_12473558_12473651 5.00 3.23 7.89 5.69 5.56 8.51 5.13 8.33 4.93 0.00 2.82 3.70 0.00 4.00 7.89 2.80 3.85 4.76 5.63 6.60 0.00 1.97 3.51 1.10 10.42 7.55 2.11 5.48 20.00 3.12 7.23 10.87 5.00 6.54 2.13 9.52 1.92 2.50 2.63 8.33 23.08 8.70 3.28 3.33 8.51 5.26 6.25 8.11 3.94 5.95 4.12 3.12 2.13 8.33 6.38 2.53 4.76 13.04 K jcn_only_AD RhoGDI chr3L + chr3L_19922009_19923914;chr3L_19921911_19923914 chr3L_19921875_19923914 chr3L_19923915_19924114;chr3L_19921868_19921874 0.00 0.61 0.00 0.94 0.00 1.37 0.00 1.27 0.69 0.00 0.56 0.28 0.84 0.00 0.41 0.93 0.70 0.72 1.13 0.29 0.00 0.59 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.93 1.30 4.55 1.63 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 2.38 0.00 0.72 1.10 0.00 0.00 0.00 0.00 0.85 0.00 1.46 0.00 0.00 0.00 K intron_retention CG13074 chr3L - chr3L_16089356_16089415 chr3L_16089355_16089356;chr3L_16089415_16089416 chr3L_16089162_16089355;chr3L_16089416_16089692 4.35 3.17 7.94 6.67 7.14 2.38 4.35 6.06 7.48 5.26 0.00 2.78 0.00 4.17 4.84 10.00 6.00 7.69 8.22 3.92 2.00 5.06 1.37 4.11 5.71 0.00 14.52 13.04 5.13 2.90 3.64 2.56 8.96 2.11 4.35 0.00 3.90 2.86 2.22 3.57 7.50 7.21 0.00 3.57 5.56 6.25 4.11 6.06 5.26 5.32 2.35 7.84 2.27 0.00 3.17 2.60 4.88 4.44 K intron_retention CG12079,CG14964 chr3L - chr3L_3159349_3159408 chr3L_3159348_3159349;chr3L_3159408_3159409 chr3L_3159274_3159348;chr3L_3159409_3159555 2.84 0.00 1.64 3.37 2.86 2.25 4.49 5.56 1.39 2.20 3.03 1.42 0.00 1.27 3.15 1.00 1.61 3.26 0.00 2.35 4.49 2.10 3.02 1.00 4.46 8.45 7.95 15.38 11.01 1.61 8.70 2.80 1.57 3.20 4.55 4.24 0.90 2.07 0.81 1.66 6.58 2.13 4.76 3.23 2.90 3.05 2.19 5.22 1.96 3.49 1.59 3.45 1.35 2.41 3.60 2.96 0.00 2.84 K alternative_donor Dp,I_chr2R_9111166_9112971,REI_chr2R_9113257_9113316 chr2R + chr2R_9112640_9112971;chr2R_9112646_9112971 chr2R_9112663_9112971 chr2R_9112972_9113071;chr2R_9112620_9112639 60.00 75.00 50.00 53.33 NA 50.00 NA NA 61.11 NA NA 55.56 NA NA 57.14 75.00 NA 55.56 NA 64.29 NA 89.47 50.00 52.94 75.00 56.25 70.59 70.00 NA 62.50 69.23 NA NA 80.00 NA NA 62.50 NA 57.89 61.54 57.14 57.14 NA 60.00 NA 75.00 66.67 NA 42.86 54.55 NA NA NA 50.00 NA NA 46.67 66.67 K intron_retention F_chr2L_5045484_5046146,CG14040,His3_3A chr2L + chr2L_5053169_5053238 chr2L_5053168_5053169;chr2L_5053238_5053239 chr2L_5052846_5053168;chr2L_5053239_5053356 0.00 0.00 0.00 0.00 3.85 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 2.70 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 N intron_retention cryptocephal,noncoding_4181,I_chr2L_21312209_21314626 chr2L + chr2L_21311018_21311192 chr2L_21311017_21311018;chr2L_21311192_21311193 chr2L_21310948_21311017;chr2L_21311193_21311214 52.13 52.13 53.38 55.56 64.29 48.18 47.71 49.66 54.17 60.47 46.74 48.79 50.00 53.54 43.21 56.03 61.43 42.54 48.31 37.84 43.12 67.31 60.34 50.62 51.28 49.40 64.71 79.73 78.09 65.22 48.39 65.67 65.81 47.19 51.81 60.68 67.82 50.00 54.78 69.07 66.67 51.02 58.82 57.76 44.38 58.33 50.76 75.81 44.93 58.04 47.40 47.47 41.30 41.35 49.28 57.26 44.63 67.24 K jcn_only_AA ced-6,I_chr2R_5324717_5324924,I_chr2R_5328640_5328696 chr2R - chr2R_5324304_5324924 chr2R_5324717_5324924 chr2R_5324925_5325024;chr2R_5323867_5324303 0.16 0.19 0.61 0.62 0.59 0.57 0.41 0.00 0.00 0.00 0.28 0.09 0.00 0.22 0.14 0.17 0.00 0.00 0.00 0.08 0.00 0.00 0.39 0.00 0.70 0.00 0.18 0.00 0.21 0.19 0.20 0.00 0.15 0.12 0.41 0.47 0.16 0.19 0.12 0.12 1.18 0.08 0.26 0.21 0.17 0.16 0.00 0.14 0.00 0.00 0.27 0.28 0.00 0.00 0.00 0.41 0.20 0.17 K intron_retention SCAR chr2L + chr2L_10976969_10977897 chr2L_10976968_10976969;chr2L_10977897_10977898 chr2L_10976793_10976968;chr2L_10977898_10978706 0.00 0.00 0.00 0.00 0.00 1.89 2.67 0.00 1.82 0.00 0.00 0.00 0.00 3.33 2.86 0.00 0.00 0.00 0.00 2.50 0.00 6.74 1.80 1.00 1.20 0.00 2.91 1.43 3.57 0.00 0.00 0.00 1.69 2.27 0.00 1.67 0.00 3.12 0.00 1.36 0.00 1.15 0.00 2.67 0.00 0.00 0.00 2.38 1.83 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N multi_cassette bwa,I_chr2L_20069515_20073377,I_chr2L_20073310_20073377 chr2L + chr2L_20066899_20072353 chr2L_20066899_20069052;chr2L_20069305_20069376;chr2L_20069515_20072353 chr2L_20069053_20069304;chr2L_20069377_20069514 chr2L_20066389_20066898;chr2L_20072354_20072646 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention hang,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16328906_16329177 chrX_16328905_16328906;chrX_16329177_16329178 chrX_16328294_16328905;chrX_16329178_16329187 5.79 6.00 1.90 5.79 1.98 3.00 6.04 8.93 5.84 6.31 5.26 6.32 8.40 7.14 5.93 5.69 8.05 6.87 3.70 3.82 1.96 6.80 8.28 7.34 4.71 4.72 6.60 12.31 2.48 4.61 4.17 4.46 3.09 5.11 7.92 3.23 7.74 3.96 5.85 4.98 0.00 5.86 5.49 5.36 4.35 5.92 8.82 2.31 7.02 4.23 6.67 6.67 6.98 5.00 7.02 5.19 9.26 3.47 K cassette CG33558,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,I_chr2R_2820149_2820628,EI_chr2R_2820947_2821570,CREI_chr2R_2832933_2850384 chr2R - chr2R_2817876_2820628 chr2R_2817876_2818567;chr2R_2820203_2820628 chr2R_2818568_2820202 chr2R_2817851_2817875;chr2R_2820629_2820728 64.71 53.85 78.57 93.33 54.55 38.89 46.15 57.89 64.71 58.82 72.73 75.00 66.67 91.67 70.59 85.71 84.62 63.64 66.67 83.33 75.00 37.84 49.09 61.29 54.17 71.43 54.17 60.00 83.33 73.81 76.47 65.00 79.41 62.50 51.85 85.00 69.23 48.15 63.64 69.39 57.14 58.33 80.00 67.86 59.38 60.98 44.00 72.09 70.37 32.14 48.15 69.23 54.17 42.86 63.16 65.38 62.50 76.67 K intron_retention CG18659,E_chr2R_5011363_5019110,RI_chr2R_5013572_5014531,I_chr2R_5016147_5016997 chr2R - chr2R_5011651_5012248 chr2R_5011650_5011651;chr2R_5012248_5012249 chr2R_5011194_5011650;chr2R_5012249_5012725 18.31 20.27 17.86 19.72 17.31 17.54 29.51 16.90 19.83 35.48 23.08 16.50 26.47 17.78 19.05 11.76 19.05 21.43 15.56 13.19 16.33 22.89 23.36 19.27 37.66 17.50 17.27 46.38 24.66 16.67 15.00 16.18 16.10 20.24 22.86 17.91 19.38 16.67 18.55 22.31 27.14 18.69 13.16 16.88 11.61 19.10 18.68 18.31 13.92 16.25 23.26 21.05 17.31 15.05 15.62 24.29 12.79 9.23 K jcn_only_AA APC4,I_chrX_8978433_8978480,RI_chrX_8980352_8980400 chrX + chrX_8978433_8978501 chrX_8978433_8978480 chrX_8978333_8978432;chrX_8978502_8978580 10.00 NA 11.11 10.00 NA NA 20.00 5.00 0.00 NA NA 18.18 NA NA NA 9.38 NA NA NA 17.14 NA NA NA NA NA NA NA NA NA NA NA NA NA 8.00 NA NA NA NA NA 10.00 NA 5.00 NA NA NA NA NA NA 5.56 NA 20.00 NA NA NA NA NA NA NA K intron_retention LIMK1,I_chrX_12488942_12489000 chrX - chrX_12484518_12486000 chrX_12484517_12484518;chrX_12486000_12486001 chrX_12483874_12484517;chrX_12486001_12486193 59.55 NA 71.43 45.83 60.00 45.45 64.71 59.09 54.05 87.50 42.86 60.87 55.56 50.00 64.29 65.00 54.55 58.82 57.14 57.58 63.64 75.86 63.16 50.00 NA NA 72.73 77.78 53.57 54.55 47.06 77.78 56.52 68.18 47.06 55.00 83.33 90.00 41.67 63.64 78.57 48.15 63.64 72.73 NA 75.00 NA 66.00 52.63 NA 43.75 NA NA NA 58.82 NA NA 73.68 K intron_retention Crk,RI_chr4_231302_233315,I_chr4_231307_232253 chr4 + chr4_230989_231063 chr4_230988_230989;chr4_231063_231064 chr4_230979_230988;chr4_231064_231112 95.83 93.75 85.00 100.00 NA 100.00 97.62 97.22 98.00 NA 100.00 96.00 100.00 95.45 93.75 90.91 94.12 100.00 95.83 97.30 90.00 100.00 93.75 100.00 100.00 92.31 100.00 88.89 NA 72.73 100.00 100.00 NA 97.14 100.00 NA 84.62 100.00 NA 90.00 NA 87.88 92.31 94.12 100.00 100.00 92.86 91.67 89.74 100.00 92.86 91.67 NA 88.89 100.00 91.67 93.75 100.00 K intron_retention msn,RI_chr3L_2557071_2557135,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2557077_2557135 chr3L_2557076_2557077;chr3L_2557135_2557136 chr3L_2556942_2557076;chr3L_2557136_2557235 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD sd,noncoding_23930,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15706472_15707633;chrX_15706564_15707633 chrX_15706568_15707633 chrX_15707634_15707635;chrX_15706468_15706471 11.28 NA NA NA NA NA NA NA 13.04 NA NA NA NA NA NA NA NA NA NA 9.52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD wdb,I_chr3R_23394314_23406731,I_chr3R_23394314_23406794,I_chr3R_23394314_23407159,RI_chr3R_23394314_23407186,I_chr3R_23394314_23407412,I_chr3R_23394314_23407715,I_chr3R_23394314_23407721,RI_chr3R_23406048_23406731,RI_chr3R_23406048_23406794,I_chr3R_23406048_23406928,RI_chr3R_23406048_23407402 chr3R - chr3R_23406048_23406928;chr3R_23406048_23407402;chr3R_23406048_23407723 chr3R_23406048_23406865 chr3R_23405948_23406047;chr3R_23407724_23407815 4.76 NA 3.85 0.00 NA NA 16.67 6.06 5.88 NA NA 6.98 NA 15.38 0.00 20.83 4.55 NA NA 3.70 NA 10.14 4.76 0.00 3.70 0.00 3.45 NA 0.00 5.00 4.35 10.00 NA 7.14 14.29 5.41 3.12 0.00 NA 4.65 0.00 13.04 NA 4.55 4.76 NA 20.00 3.33 11.63 0.00 4.88 NA NA NA 8.00 NA NA NA K cassette CG17471,RI_chr4_1213397_1214333,RI_chr4_1213397_1216053,RI_chr4_1214248_1214333,I_chr4_1214293_1214333,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1213397_1214333 chr4_1213397_1214185;chr4_1214248_1214333 chr4_1214186_1214247 chr4_1213332_1213396;chr4_1214334_1214402 82.35 80.95 85.00 64.71 100.00 90.48 77.42 78.38 81.25 NA 87.50 81.48 100.00 88.24 90.91 87.80 75.00 66.67 81.82 77.78 88.89 90.00 100.00 92.31 NA 77.78 82.35 NA NA 60.00 74.29 79.17 80.95 82.93 85.00 76.92 90.00 66.67 80.00 81.82 80.00 87.50 93.75 80.77 88.89 82.93 95.65 75.00 89.36 92.00 95.45 80.00 83.33 76.47 83.33 94.12 68.00 70.27 K jcn_only_AD Gli chr2L - chr2L_15760575_15762688 chr2L_15760575_15762568 chr2L_15760402_15760574;chr2L_15762689_15762723 50.00 NA NA NA NA NA NA NA 50.00 40.00 NA NA NA NA NA NA NA NA NA 45.45 NA NA NA NA NA NA NA NA 33.33 NA NA NA 38.71 50.00 NA NA NA NA NA 62.50 42.31 56.67 NA 45.45 NA 70.00 NA 50.88 51.43 NA NA NA NA NA NA NA NA NA K intron_retention Cctgamma chr3R + chr3R_12474357_12474422 chr3R_12474356_12474357;chr3R_12474422_12474423 chr3R_12473857_12474356;chr3R_12474423_12475700 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.19 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Hcf,I_chr4_384272_384649,I_chr4_391984_392875 chr4 + chr4_384266_384493 chr4_384272_384493 chr4_384494_384649;chr4_384172_384265 21.15 20.69 20.37 15.94 17.65 18.18 19.72 22.97 21.90 27.78 13.33 20.34 18.42 21.05 10.87 21.15 23.53 19.57 18.00 19.74 21.21 28.57 25.00 15.38 28.57 24.44 22.73 41.18 23.81 33.33 16.22 14.29 23.53 20.90 36.84 25.00 18.92 21.74 24.32 20.83 NA 21.95 10.71 12.20 35.71 29.41 20.00 25.00 17.65 21.05 26.67 16.67 25.00 NA 17.86 37.50 28.57 27.27 K alternative_donor CG1074,I_chr3R_261173_261244,RI_chr3R_265878_265942 chr3R + chr3R_259882_260376 chr3R_259909_260376 chr3R_260377_261172;chr3R_259736_259881 100.00 100.00 100.00 100.00 NA 90.91 100.00 94.74 100.00 100.00 100.00 100.00 100.00 90.91 100.00 95.00 NA 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 92.86 95.00 95.83 100.00 100.00 100.00 NA 100.00 100.00 96.15 100.00 95.45 100.00 100.00 100.00 100.00 90.91 100.00 96.00 100.00 95.00 100.00 100.00 100.00 92.86 88.89 100.00 97.50 K intron_retention Aldh-III,RE_chr2R_3355332_3355720,I_chr2R_3356541_3356614,RI_chr2R_3357578_3357636,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3355332_3356614 chr2R_3355331_3355332;chr2R_3356614_3356615 chr2R_3355296_3355331;chr2R_3356615_3356666 42.86 42.50 33.33 70.73 40.54 31.58 63.64 55.74 53.62 53.33 53.85 52.94 62.50 50.00 52.63 28.57 46.67 58.82 44.44 32.63 56.25 26.47 51.22 34.88 37.84 33.33 57.69 57.14 42.86 31.03 44.44 33.33 36.36 47.27 40.00 72.73 32.43 33.33 32.73 37.25 10.81 48.44 58.33 44.12 35.00 26.53 31.25 46.15 50.00 41.38 46.15 47.62 41.67 33.33 40.82 27.91 39.13 48.15 K alternative_donor eIF-5A,I_chr2R_19945430_19946454,I_chr2R_19945576_19946006,I_chr2R_19945723_19946006,I_chr2R_19945783_19946006,I_chr2R_19945852_19946006,I_chr2R_19945875_19946006,I_chr2R_19945921_19946006,I_chr2R_19946299_19946454,I_chr2R_19946657_19946733,I_chr2R_19948517_19948682 chr2R + chr2R_19945576_19946006;chr2R_19945921_19946006;chr2R_19945426_19946006;chr2R_19945430_19946006 chr2R_19945875_19946006 chr2R_19946007_19946106;chr2R_19945343_19945425 0.17 0.17 0.06 0.29 0.00 0.07 0.26 0.17 0.22 0.35 0.11 0.13 0.19 0.09 0.05 0.09 0.14 0.08 0.07 0.15 0.08 0.22 0.52 0.35 0.13 0.14 1.53 0.75 0.85 0.22 0.24 0.16 0.19 0.09 0.19 0.58 0.26 0.32 0.21 0.10 0.18 0.18 0.10 0.15 0.07 0.24 0.26 0.11 0.11 0.52 0.68 0.24 0.09 0.21 0.05 0.23 0.12 0.07 K alternative_donor beta-Spec chrX + chrX_17551983_17555021 chrX_17551995_17555021 chrX_17555022_17561265;chrX_17551926_17551982 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Dcp2,F_chr3L_15815909_15816023,F_chr3L_15817090_15817547 chr3L - chr3L_15816282_15816346 chr3L_15816281_15816282;chr3L_15816346_15816347 chr3L_15816063_15816281;chr3L_15816347_15816855 0.00 0.00 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.68 0.00 0.00 4.44 0.00 5.17 0.00 29.69 0.00 0.00 0.00 0.00 0.00 0.00 7.27 2.60 0.00 1.59 0.00 3.85 1.48 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K alternative_acceptor Kap3 chrX - chrX_11228955_11229028 chrX_11228967_11229028 chrX_11229029_11229285;chrX_11228715_11228954 97.22 100.00 93.75 100.00 90.91 100.00 95.24 95.45 90.91 100.00 100.00 100.00 90.91 100.00 92.31 100.00 100.00 92.86 100.00 97.50 90.00 96.67 97.30 96.43 92.86 92.86 96.30 96.67 100.00 96.30 100.00 100.00 100.00 95.45 100.00 100.00 96.55 100.00 97.22 100.00 91.67 100.00 92.86 96.15 100.00 100.00 95.00 92.86 96.30 100.00 96.15 100.00 93.75 95.00 100.00 95.65 100.00 100.00 K intron_retention CG7158 chr3L - chr3L_21668063_21668121 chr3L_21668062_21668063;chr3L_21668121_21668122 chr3L_21667494_21668062;chr3L_21668122_21668273 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 3.92 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 18.18 25.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 0.00 K alternative_donor scra,EI_chr2R_3480349_3480405 chr2R + chr2R_3480339_3480405 chr2R_3480349_3480405 chr2R_3480406_3480505;chr2R_3480249_3480338 0.00 0.00 0.00 0.31 0.00 0.56 0.00 0.00 0.32 0.99 0.00 0.00 0.00 0.00 0.48 0.00 0.72 0.00 0.00 0.23 0.00 0.00 0.40 0.00 0.00 0.00 0.51 1.01 0.00 0.42 1.21 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.27 0.00 0.27 0.00 0.00 0.34 0.00 0.00 0.45 0.30 0.00 0.00 0.91 0.00 0.00 0.46 0.00 0.00 0.39 K alternative_acceptor CycA,RE_chr3L_11825347_11826111 chr3L - chr3L_11825344_11825973 chr3L_11825347_11825973 chr3L_11825974_11826431;chr3L_11825247_11825343 73.77 79.25 67.86 73.33 84.44 78.18 80.00 79.45 69.23 72.92 70.83 72.22 73.47 74.42 74.07 77.59 80.56 77.42 70.69 75.63 75.56 72.09 74.68 75.00 76.47 73.58 73.77 55.17 78.95 77.78 74.55 84.85 70.93 68.89 73.33 75.00 66.67 72.73 67.92 65.91 72.50 73.96 76.19 65.62 69.81 73.08 72.22 77.22 76.19 66.67 81.54 76.74 64.71 70.27 77.78 72.73 58.62 75.00 K jcn_only_AA fbp,RI_chr2L_19763745_19764069 chr2L - chr2L_19762832_19764069;chr2L_19763498_19764069 chr2L_19763745_19764069 chr2L_19764070_19764120 15.38 NA 20.00 0.00 NA NA NA 13.89 12.73 13.79 NA 18.52 NA NA NA 28.00 NA NA 8.70 18.52 NA 12.50 NA 16.13 NA NA NA NA NA NA 24.14 NA 23.08 15.38 NA NA 14.81 NA 3.33 14.74 NA 20.69 22.73 10.00 NA 32.14 NA 24.14 18.75 0.00 10.71 NA NA 5.00 18.75 NA 9.09 44.00 K intron_retention RagC,CG30373 chr2R - chr2R_4049934_4049992 chr2R_4049933_4049934;chr2R_4049992_4049993 chr2R_4049791_4049933;chr2R_4049993_4050055 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 1.41 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 2.33 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 2.70 0.00 0.00 1.45 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 K cassette cnn,I_chr2R_9333096_9336723,I_chr2R_9333096_9336812,RI_chr2R_9334834_9336719,I_chr2R_9347031_9370659 chr2R - chr2R_9333096_9336501 chr2R_9333096_9334636;chr2R_9334834_9336501 chr2R_9334637_9334833 chr2R_9333052_9333095;chr2R_9336502_9336659 100.00 100.00 100.00 95.83 100.00 100.00 96.55 96.43 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 90.00 90.00 94.12 100.00 100.00 80.00 91.67 88.24 92.86 100.00 90.91 96.15 90.91 95.45 100.00 100.00 95.00 96.00 100.00 100.00 94.12 100.00 92.31 91.43 86.67 100.00 100.00 96.88 100.00 95.00 100.00 100.00 96.15 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette Nop60B,RI_chr2R_20063248_20063455,I_chr2R_20063248_20063949,F_chr2R_20073291_20073744 chr2R + chr2R_20063248_20063949 chr2R_20063248_20063439;chr2R_20063715_20063949 chr2R_20063440_20063714 chr2R_20063148_20063247;chr2R_20063950_20064049 100.00 100.00 100.00 99.10 100.00 100.00 99.75 99.78 99.75 100.00 99.65 100.00 100.00 100.00 99.74 100.00 100.00 99.69 99.67 99.65 100.00 99.82 99.87 99.85 100.00 100.00 100.00 100.00 100.00 100.00 99.67 100.00 99.78 100.00 100.00 99.75 100.00 99.85 99.88 100.00 99.66 100.00 99.61 99.78 99.77 100.00 100.00 99.67 99.87 99.85 100.00 99.73 99.89 100.00 100.00 100.00 100.00 99.75 K intron_retention CG3744,I_chr3R_20701248_20701968 chr3R - chr3R_20701248_20701968 chr3R_20701247_20701248;chr3R_20701968_20701969 chr3R_20701148_20701247;chr3R_20701969_20702068 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 94.44 100.00 100.00 97.83 100.00 100.00 92.86 100.00 100.00 100.00 100.00 97.56 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Src42A chr2R + chr2R_1898615_1898675 chr2R_1898614_1898615;chr2R_1898675_1898676 chr2R_1898446_1898614;chr2R_1898676_1898842 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 1.11 0.00 0.00 0.00 1.32 2.26 0.00 0.00 0.98 0.00 0.00 1.23 2.44 2.63 0.00 0.00 0.00 0.00 0.00 3.06 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Cht2,I_chr3L_1754361_1754605,I_chr3L_1754361_1754860 chr3L - chr3L_1754361_1755586 chr3L_1754360_1754361;chr3L_1755586_1755587 chr3L_1754261_1754360;chr3L_1755587_1755934 10.53 NA NA 0.00 NA NA NA NA 15.00 NA NA 13.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.25 NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA NA NA K jcn_only_AA Updo chr2R + chr2R_5472307_5472432 chr2R_5472307_5472426 chr2R_5472269_5472306;chr2R_5472433_5473176 0.00 1.33 1.03 1.65 0.00 0.00 0.00 0.84 0.84 0.00 0.00 0.61 0.00 0.00 1.00 0.00 0.00 0.00 2.13 0.55 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.84 0.00 0.00 1.79 1.22 1.47 1.25 1.08 0.00 0.82 0.00 0.61 0.00 0.00 1.32 1.63 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 K alternative_acceptor msps,I_chr3R_11877071_11877796 chr3R + chr3R_11885407_11885463 chr3R_11885407_11885460 chr3R_11885207_11885406;chr3R_11885464_11886397 98.55 98.68 98.70 98.31 98.04 98.61 96.67 96.88 98.16 100.00 97.96 99.28 98.57 100.00 97.37 98.29 98.48 98.36 98.73 94.74 98.53 98.70 99.13 98.33 98.70 100.00 98.11 97.96 100.00 98.55 98.82 98.33 98.85 99.19 98.70 98.55 96.74 97.18 96.72 98.61 98.61 98.74 98.31 97.26 100.00 97.32 97.87 99.02 99.21 99.10 97.01 98.11 98.04 98.46 99.07 97.83 98.95 98.84 K multi_cassette noncoding_24933,sw chrX - chrX_20101671_20105848 chrX_20101671_20103190;chrX_20103239_20104496;chrX_20104518_20105848 chrX_20103191_20103238;chrX_20104497_20104517 chrX_20101515_20101670;chrX_20105849_20105976 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA K jcn_only_AD Msp-300,I_chr2L_5154189_5154247,I_chr2L_5197634_5197866 chr2L + chr2L_5148883_5154247 chr2L_5152356_5154247 chr2L_5154248_5154347 8.61 0.00 2.70 8.33 7.41 14.81 5.26 12.82 9.17 NA 3.23 12.00 6.38 10.26 11.76 12.00 10.87 5.56 19.35 8.20 25.00 5.56 12.12 NA NA 6.90 NA NA NA NA 16.67 NA 4.55 5.63 NA NA 3.12 NA NA NA NA 10.91 6.90 15.00 NA NA NA 5.00 11.11 NA NA NA NA NA 8.89 NA NA NA K jcn_only_AD Mtor,I_chr2R_7747557_7747819 chr2R + chr2R_7747557_7747819 chr2R_7747569_7747819 chr2R_7747820_7747919;chr2R_7747457_7747556 100.00 100.00 100.00 98.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.25 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.43 99.46 100.00 100.00 100.00 99.26 100.00 98.90 100.00 100.00 100.00 100.00 99.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.17 100.00 100.00 100.00 100.00 99.40 100.00 100.00 100.00 100.00 100.00 100.00 99.36 99.50 K intron_retention CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8176052_8176572 chr2L_8176051_8176052;chr2L_8176572_8176573 chr2L_8175995_8176051;chr2L_8176573_8176806 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 2.02 0.00 0.00 0.00 0.00 0.00 2.88 0.96 2.60 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG18643,F_chr3R_7256294_7256363 chr3R + chr3R_7255993_7256060 chr3R_7255997_7256060 chr3R_7256061_7256293;chr3R_7255963_7255992 5.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA 7.69 NA NA NA NA 4.35 K intron_retention sprt,CG30022 chr2R - chr2R_7272948_7273060 chr2R_7272947_7272948;chr2R_7273060_7273061 chr2R_7272275_7272947;chr2R_7273061_7274101 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.13 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG3262 chr2L + chr2L_22240104_22240169 chr2L_22240104_22240153 chr2L_22239906_22240103;chr2L_22240170_22240402 41.09 49.02 35.51 44.27 42.59 40.38 42.66 36.18 46.29 31.96 36.69 39.95 51.26 39.08 36.33 42.24 37.50 37.50 38.18 34.34 35.33 42.74 36.14 39.84 46.34 43.41 39.04 31.51 43.72 50.94 18.66 42.39 45.42 37.87 45.30 31.79 35.29 45.14 43.60 40.11 54.21 39.46 34.10 44.13 53.50 43.79 41.95 41.09 37.50 41.08 50.57 44.08 41.33 45.21 36.58 42.07 40.48 46.92 K intron_retention RI_chrX_1796525_1796585,mip130,I_chrX_1820956_1821011,CG11596 chrX + chrX_1821953_1822366 chrX_1821952_1821953;chrX_1822366_1822367 chrX_1821726_1821952;chrX_1822367_1822613 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.79 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.67 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette KCNQ,I_chr2R_6034329_6034563,I_chr2R_6039928_6040408 chr2R - chr2R_6035658_6038360 chr2R_6035658_6036137;chr2R_6036600_6036852;chr2R_6036946_6038360 chr2R_6036138_6036599;chr2R_6036853_6036945 chr2R_6035587_6035657;chr2R_6038361_6038372 100.00 NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA 100.00 NA 40.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 75.00 NA NA NA NA 100.00 NA NA 100.00 100.00 NA NA NA NA NA NA NA NA 83.33 K alternative_last_exon spi,I_chr2L_19569183_19577185,I_chr2L_19569227_19572142,I_chr2L_19569227_19577173 chr2L - chr2L_19569227_19572499 chr2L_19571768_19572499 chr2L_19567812_19569226 chr2L_19571572_19571767 chr2L_19572500_19572711 65.79 85.48 76.32 50.94 81.25 60.00 69.57 65.79 50.00 22.00 50.00 57.33 52.00 41.03 60.00 78.43 86.67 88.46 54.72 78.65 89.66 42.11 58.71 77.27 50.00 70.00 73.85 36.84 51.28 84.91 68.52 54.76 67.89 69.84 70.79 81.08 36.67 61.73 58.23 38.79 67.11 69.51 84.62 47.37 61.54 69.09 72.92 56.80 70.00 51.81 78.90 58.73 44.44 51.04 68.52 72.37 56.52 84.31 K jcn_only_AA CG1637,I_chrX_10767807_10771447 chrX - chrX_10766073_10771447;chrX_10767742_10771447;chrX_10770030_10771447 chrX_10770033_10771447 chrX_10771448_10771547 2.29 0.82 2.70 0.00 3.91 0.79 0.00 1.01 0.62 4.11 4.42 2.46 0.78 0.67 1.86 2.38 2.56 5.93 4.38 1.59 5.22 2.07 0.76 3.66 0.79 1.22 3.52 3.14 2.44 3.76 2.33 3.70 2.61 2.31 0.00 0.61 2.56 1.41 2.07 1.93 0.00 2.79 0.94 2.29 5.80 2.60 3.23 2.73 2.19 0.51 1.87 0.00 1.71 2.89 2.01 3.51 2.09 2.91 K cassette Sulf1,I_chr3R_12140969_12163566,I_chr3R_12140969_12165032,I_chr3R_12147892_12156641,EI_chr3R_12156679_12165032 chr3R - chr3R_12140969_12163566 chr3R_12140969_12156641;chr3R_12156679_12163566 chr3R_12156642_12156678 chr3R_12140869_12140968;chr3R_12163567_12163666 100.00 NA NA NA NA NA NA 100.00 88.89 NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor Su(var)2-10,RI_chr2R_5006333_5006392 chr2R + chr2R_5006553_5008568;chr2R_5006553_5008282;chr2R_5006553_5007804 chr2R_5006553_5008598 chr2R_5006405_5006552;chr2R_5008599_5008637 1.61 2.27 4.76 0.00 0.00 3.03 3.03 0.00 1.20 4.65 0.00 0.00 0.00 0.00 0.00 2.00 0.00 3.57 0.00 0.98 3.23 0.00 2.56 1.79 0.00 0.00 1.72 5.41 5.00 0.00 0.00 3.92 1.47 1.67 4.76 1.69 1.69 6.25 3.33 1.06 0.00 0.00 0.00 0.00 4.55 1.69 2.27 1.47 0.00 3.51 1.61 2.78 2.33 0.00 0.00 5.56 5.36 0.00 K intron_retention Ptp99A,I_chr3R_25302126_25302175 chr3R + chr3R_25308795_25308851 chr3R_25308794_25308795;chr3R_25308851_25308852 chr3R_25308239_25308794;chr3R_25308852_25309120 0.00 0.00 NA 4.00 NA 0.00 0.00 0.00 3.85 0.00 0.00 3.85 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 NA 5.88 0.00 0.00 NA 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA 4.26 0.00 0.00 0.00 0.00 0.00 3.57 NA 0.00 0.00 K intron_retention msb1l chr2L + chr2L_19577975_19578039 chr2L_19577974_19577975;chr2L_19578039_19578040 chr2L_19577735_19577974;chr2L_19578040_19579131 1.48 1.74 1.15 2.99 1.28 0.00 0.93 1.32 0.59 0.00 0.00 1.69 1.03 2.22 0.79 1.71 0.00 0.00 2.75 0.00 0.00 5.88 0.81 3.76 0.00 1.79 0.00 3.03 1.82 0.00 0.00 0.00 2.56 2.00 2.22 0.00 1.94 2.04 1.48 2.75 0.00 2.02 1.06 0.00 0.00 0.00 2.54 2.60 1.48 0.00 1.61 2.08 1.75 2.50 3.85 2.63 2.78 2.22 K alternative_acceptor I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_927771_929704,CG32021,RI_chr4_928180_928245,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_928177_928245;chr4_928180_928245 chr4_928193_928245 chr4_928246_928314;chr4_928109_928176 22.50 25.00 20.00 43.59 22.50 15.91 14.05 32.26 26.53 18.52 25.00 28.12 27.03 40.48 25.32 22.86 24.32 19.57 21.74 29.07 15.91 31.61 27.55 22.50 21.54 30.61 35.34 32.58 25.64 17.72 20.00 23.68 43.08 25.00 20.31 24.00 17.72 25.00 20.22 15.50 29.09 20.43 22.00 14.29 20.75 16.22 25.00 16.85 27.84 15.19 15.00 16.36 25.00 18.92 21.82 18.75 22.22 31.25 K alternative_acceptor trc,I_chr3L_19826244_19826323 chr3L - chr3L_19825813_19825869 chr3L_19825825_19825869 chr3L_19825870_19825976;chr3L_19825328_19825812 9.43 2.94 8.70 18.75 8.33 8.33 12.00 12.00 11.11 2.94 3.85 9.43 12.00 15.00 8.33 10.71 6.25 4.00 17.65 9.52 4.17 10.91 7.46 9.43 7.89 4.17 10.71 23.21 3.77 15.79 17.86 8.70 11.11 10.00 10.00 7.89 11.86 6.25 12.50 10.87 9.30 10.91 3.85 11.76 12.82 6.12 5.26 8.33 13.89 11.63 3.85 10.00 10.81 17.14 8.57 6.38 8.82 7.32 N jcn_only_AA cana,cana_CG33695 chr2L + chr2L_11271534_11272684 chr2L_11271534_11272496 chr2L_11270698_11271533 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 0.00 24.32 NA NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA K cassette CG8671,I_chr2L_21275807_21277205 chr2L + chr2L_21278430_21281131;chr2L_21275807_21281131 chr2L_21278430_21279883,chr2L_21275807_21279883;chr2L_21280448_21281131 chr2L_21279884_21280447 chr2L_21275724_21275806;chr2L_21281132_21281337 6.56 3.45 8.70 18.33 6.82 7.32 10.14 7.23 8.55 9.43 5.56 6.25 5.13 7.41 10.00 4.00 6.67 5.00 3.45 10.43 5.41 10.13 8.33 7.53 6.78 3.70 8.33 9.43 13.64 5.26 9.26 4.00 7.89 5.68 7.94 12.86 7.69 8.47 7.50 4.00 3.77 7.87 4.44 6.49 6.52 4.00 4.62 4.29 8.16 3.37 5.88 6.56 5.77 5.08 5.17 5.63 4.11 4.23 K intron_retention Syx13,RI_chr3L_13037959_13038017,CG11279 chr3L + chr3L_13037666_13038017 chr3L_13037665_13037666;chr3L_13038017_13038018 chr3L_13037535_13037665;chr3L_13038018_13038117 17.46 20.00 15.79 28.57 10.87 8.70 21.67 12.33 20.43 15.09 21.43 14.29 11.90 8.16 17.81 25.00 11.63 10.42 21.05 12.93 19.15 30.13 20.99 18.99 20.31 23.40 18.00 17.86 22.58 23.81 21.43 16.36 12.90 11.94 10.94 29.51 26.09 21.57 19.51 15.06 20.00 16.52 17.14 10.34 16.28 10.89 10.11 9.09 13.68 19.30 22.62 22.58 12.73 17.46 11.86 12.00 18.75 16.88 K jcn_only_AD tral,I_chr3L_12511355_12511540,I_chr3L_12512171_12512251 chr3L + chr3L_12511325_12511537 chr3L_12511355_12511537 chr3L_12511538_12511767;chr3L_12511255_12511324 82.46 82.17 87.68 76.50 86.08 86.06 81.79 84.26 85.82 73.28 85.33 87.97 85.29 91.67 83.12 91.08 88.30 85.00 88.52 86.42 87.50 73.02 80.09 79.94 85.71 88.80 81.14 78.18 86.58 77.55 82.74 84.09 84.76 82.48 80.52 74.81 78.22 76.90 79.38 59.29 83.42 86.81 82.35 75.15 77.26 73.68 77.53 82.46 87.03 73.90 80.27 81.70 81.76 78.74 87.09 81.00 80.07 83.91 K jcn_only_AD RI_chr3L_201061_201173,NitFhit,I_chr3L_212783_212843 chr3L + chr3L_203762_203843 chr3L_203791_203843 chr3L_203844_205311;chr3L_203699_203761 100.00 NA 100.00 98.39 100.00 100.00 100.00 100.00 100.00 NA 92.00 100.00 95.24 NA 97.30 100.00 93.33 97.78 100.00 98.59 100.00 100.00 NA NA NA 100.00 NA NA 95.83 100.00 96.15 100.00 98.97 98.08 NA NA NA NA NA 100.00 96.88 96.83 100.00 NA 100.00 100.00 NA 100.00 97.10 NA NA NA NA NA 97.50 NA NA 98.59 K alternative_acceptor CG9007,I_chr3L_13995402_13996269,I_chr3L_13995402_13996272,I_chr3L_13995402_13996296,I_chr3L_13995480_13996292,RI_chr3L_14010982_14011111 chr3L + chr3L_13995402_13996272;chr3L_13995402_13996292;chr3L_13995402_13996269 chr3L_13995402_13996296 chr3L_13995380_13995401;chr3L_13996297_13996360 5.57 NA 12.50 7.14 NA NA 0.00 5.26 6.67 NA NA 0.00 NA NA 14.29 10.53 NA NA 12.50 12.50 NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA 9.09 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA NA NA 0.00 5.88 NA NA NA NA NA 10.00 NA NA NA K intron_retention CG32809,I_chrX_1577031_1577129,CEI_chrX_1579569_1579679,RI_chrX_1585391_1586471,I_chrX_1589508_1589564 chrX - chrX_1578591_1578663 chrX_1578590_1578591;chrX_1578663_1578664 chrX_1578486_1578590;chrX_1578664_1578729 0.00 NA NA 0.00 NA 0.00 NA 0.00 0.00 7.69 0.00 11.11 NA NA NA NA NA NA NA 0.00 NA 9.52 0.00 0.00 0.00 0.00 NA NA 12.50 0.00 0.00 NA 11.76 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 12.00 0.00 NA 0.00 NA NA NA NA NA NA NA K intron_retention spn-A,I_chr3R_25881521_25881590 chr3R - chr3R_25881521_25881583 chr3R_25881520_25881521;chr3R_25881583_25881584 chr3R_25881421_25881520;chr3R_25881584_25881755 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.03 0.00 0.00 2.70 2.41 0.00 0.00 1.82 2.67 0.00 0.00 2.78 0.00 0.00 2.50 5.13 10.00 5.08 0.00 2.90 0.00 0.00 2.15 0.00 2.04 0.00 0.00 0.00 0.00 3.64 0.00 0.00 0.00 0.00 0.00 0.00 1.80 0.00 2.08 0.00 0.00 0.00 0.00 2.53 0.00 0.00 0.00 K jcn_only_AD None chrU - chrU_5771599_5771684;chrU_5771599_5771693 chrU_5771599_5771833 1.07 0.95 0.61 0.84 1.23 1.38 1.46 1.13 1.00 0.81 0.50 1.07 1.30 1.24 0.41 0.62 0.45 0.78 0.57 0.98 0.26 0.81 3.04 1.58 1.72 0.86 0.96 1.13 1.81 0.81 0.79 0.80 1.29 1.18 1.36 2.16 1.26 1.32 1.62 1.64 0.67 1.41 0.85 0.81 1.05 1.20 1.16 0.76 1.11 1.84 1.37 1.58 0.40 1.07 0.87 1.83 1.71 0.67 K cassette Pfk,I_chr2R_5999081_6000140,E_chr2R_6001157_6001630 chr2R + chr2R_6000676_6002421;chr2R_6001157_6002421 chr2R_6000676_6001630,chr2R_6001157_6001630;chr2R_6001740_6002421 chr2R_6001631_6001739 chr2R_6000521_6000675;chr2R_6002422_6002610 32.43 32.35 32.43 23.26 56.00 42.86 36.00 52.78 39.53 26.87 41.38 36.84 60.00 40.00 42.11 68.42 26.67 17.65 66.67 51.22 37.04 9.89 34.74 24.71 36.21 43.75 26.60 19.23 15.00 38.60 42.50 28.57 36.73 50.00 29.79 13.64 32.41 27.94 26.40 31.75 25.00 33.85 29.41 33.82 25.42 27.94 29.69 30.77 40.48 33.77 34.57 42.00 31.03 31.58 48.15 29.31 30.19 23.81 K cassette Edem2 chr2L + chr2L_13195405_13195749 chr2L_13195405_13195580;chr2L_13195680_13195749 chr2L_13195581_13195679 chr2L_13195133_13195404;chr2L_13195750_13197281 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 99.07 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.78 100.00 100.00 100.00 100.00 100.00 100.00 97.14 97.83 100.00 100.00 85.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 98.72 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_last_exon CG30387,CG30386,I_chr2R_17184688_17191389 chr2R + chr2R_17183719_17191389 chr2R_17183719_17187341 chr2R_17191390_17191524 chr2R_17187342_17187978 chr2R_17183650_17183718 0.00 0.00 0.00 4.17 7.69 0.00 4.55 3.12 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 9.09 4.17 5.56 7.69 0.00 0.00 0.00 11.11 0.00 0.00 NA 7.69 0.00 0.00 9.09 4.17 0.00 4.00 0.00 NA 3.23 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA K jcn_only_AD RI_chr3R_7061265_7061322,CG31388 chr3R + chr3R_7064332_7064678 chr3R_7064623_7064678 chr3R_7064679_7064763;chr3R_7063775_7064331 85.31 NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.62 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K multi_cassette DCAP,E_chr2R_6159586_6174578,I_chr2R_6164310_6172914,I_chr2R_6172307_6179999,I_chr2R_6178643_6181126,RI_chr2R_6183553_6192101,I_chr2R_6188094_6192101 chr2R + chr2R_6172307_6181126 chr2R_6172307_6179999;chr2R_6180378_6180845;chr2R_6180945_6181126 chr2R_6180000_6180377;chr2R_6180846_6180944 chr2R_6172207_6172306;chr2R_6181127_6181226 100.00 75.00 75.00 NA 100.00 100.00 100.00 75.00 80.00 100.00 NA 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 80.00 NA NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 75.00 100.00 100.00 100.00 100.00 NA 83.33 NA 100.00 100.00 100.00 100.00 NA 100.00 75.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG13937,RI_chr3L_1877663_1877719 chr3L - chr3L_1881477_1882999;chr3L_1881558_1882999 chr3L_1881549_1882999 chr3L_1883000_1883037;chr3L_1881129_1881476 50.00 NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA 16.67 NA NA NA 44.44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA K jcn_only_AA pim chr2L + chr2L_10363139_10363201 chr2L_10363139_10363185 chr2L_10362977_10363138;chr2L_10363202_10363525 0.00 NA NA 0.00 NA NA 0.00 3.12 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA 3.85 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 2.56 NA NA NA NA NA NA NA NA NA K intron_retention CG31211 chr3R + chr3R_7777961_7778362 chr3R_7777960_7777961;chr3R_7778362_7778363 chr3R_7777954_7777960;chr3R_7778363_7778390 26.09 28.57 23.08 26.47 39.13 24.14 34.78 33.33 32.65 19.05 35.00 22.45 39.29 36.84 29.17 34.21 36.36 26.09 29.73 22.81 27.78 21.05 24.49 19.51 46.67 33.33 26.47 27.27 13.04 28.21 35.14 14.29 7.41 25.00 31.82 50.00 21.43 21.21 9.09 24.39 25.00 34.69 26.09 24.32 29.17 28.12 23.81 18.52 32.73 22.73 22.22 21.88 17.86 29.41 37.50 25.58 18.75 21.62 K jcn_only_AD Best1,I_chr3R_5991957_5995913,RI_chr3R_5993184_5995905 chr3R - chr3R_5989579_5990296;chr3R_5989579_5990058 chr3R_5989579_5990440 chr3R_5988921_5989578;chr3R_5990441_5990683 95.61 95.74 96.00 96.27 99.02 94.57 92.45 95.92 97.27 99.21 97.53 98.41 96.67 95.41 92.80 95.00 96.10 97.30 93.75 98.17 93.68 91.55 94.02 97.01 96.43 97.30 94.52 100.00 93.02 98.04 89.31 89.06 92.77 96.73 95.79 94.62 95.31 95.21 97.96 95.94 93.10 96.31 97.53 95.36 96.84 94.41 97.22 95.24 93.79 94.17 93.33 94.23 94.12 95.61 98.11 93.33 89.86 96.30 K cassette Atpalpha,I_chr3R_16788018_16789830,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16783890_16789446;chr3R_16785103_16789446 chr3R_16785103_16787936,chr3R_16783890_16787936;chr3R_16788018_16789446 chr3R_16787937_16788017 chr3R_16783790_16783889;chr3R_16789447_16789578 57.65 52.67 46.43 43.06 31.07 28.33 31.05 41.94 49.50 61.02 12.00 87.36 49.47 43.70 43.97 44.83 27.86 44.79 42.75 72.77 27.96 62.64 62.69 68.00 57.78 44.00 52.63 67.39 77.27 56.32 52.50 70.37 65.87 36.25 57.04 71.32 61.62 65.22 64.42 66.67 65.33 40.67 44.95 60.36 76.27 68.07 59.09 75.00 39.44 51.00 57.65 65.71 61.67 60.47 44.52 63.83 60.94 57.65 K intron_retention Sep1 chrX + chrX_21230732_21230797 chrX_21230731_21230732;chrX_21230797_21230798 chrX_21230539_21230731;chrX_21230798_21231056 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.53 0.00 0.00 0.00 0.57 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Nacalpha,I_chr2R_8648027_8648303 chr2R - chr2R_8648027_8648305 chr2R_8648026_8648027;chr2R_8648305_8648306 chr2R_8647927_8648026;chr2R_8648306_8648314 3.77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3.77 NA NA NA NA NA NA NA NA NA NA NA 2.58 NA NA NA 0.00 NA 30.77 NA NA 20.00 NA NA NA 4.48 NA NA NA NA 0.00 K intron_retention CG7324,I_chr3L_21335553_21335702,I_chr3L_21340055_21342206 chr3L - chr3L_21334616_21334674 chr3L_21334615_21334616;chr3L_21334674_21334675 chr3L_21334467_21334615;chr3L_21334675_21335236 3.20 5.00 0.00 3.92 2.94 2.13 5.47 5.61 6.20 NA 0.00 2.63 3.70 2.04 0.00 4.48 0.00 6.25 6.35 4.60 3.45 0.00 4.76 5.00 0.00 4.17 4.55 0.00 0.00 0.00 6.56 NA 0.00 2.04 0.00 0.00 12.00 6.25 5.00 8.00 0.00 3.16 1.92 7.32 NA 0.00 0.00 NA 6.80 7.69 6.25 3.23 NA NA 1.54 0.00 0.00 NA K intron_retention Pp4-19C,RI_chrX_20293980_20294069,REI_chrX_20294004_20294672 chrX - chrX_20293022_20293085 chrX_20293021_20293022;chrX_20293085_20293086 chrX_20292114_20293021;chrX_20293086_20293979 0.00 0.87 0.00 0.00 0.00 0.00 1.42 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 1.01 0.00 0.00 0.00 1.20 2.75 2.65 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD MB8.chr3R.pasa.66,CG1091,I_chr3R_2910490_2910662,RI_chr3R_2910490_2910686,RI_chr3R_2911041_2911135,RI_chr3R_2946518_2946663 chr3R - chr3R_2910490_2910686;chr3R_2910490_2910646 chr3R_2910490_2910662 chr3R_2910390_2910489;chr3R_2910687_2910762 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.93 0.00 0.00 0.00 0.91 0.00 2.08 1.47 0.00 0.00 0.00 2.27 0.00 0.00 1.89 1.39 0.00 0.00 0.00 2.17 3.12 0.00 0.00 2.26 0.00 0.83 1.92 1.92 0.00 0.00 0.00 0.00 2.42 0.00 0.00 0.00 0.00 1.08 1.37 0.00 0.00 0.00 0.00 0.00 1.69 1.96 0.00 0.00 1.54 0.00 0.76 K intron_retention CG31342,I_chr3R_8813079_8814327,I_chr3R_8822346_8822403 chr3R + chr3R_8816222_8816274 chr3R_8816221_8816222;chr3R_8816274_8816275 chr3R_8816063_8816221;chr3R_8816275_8817262 1.56 0.00 0.78 2.72 0.73 2.44 1.23 1.55 2.22 2.99 2.11 3.57 2.13 1.75 2.92 1.88 2.75 2.38 1.56 1.87 1.71 4.58 3.54 0.00 0.00 0.76 5.19 6.35 2.44 0.00 2.69 0.00 2.02 3.50 0.00 4.12 2.92 0.93 0.00 1.42 1.15 1.59 0.00 1.98 0.00 0.00 1.71 3.85 1.30 0.00 1.52 0.00 0.00 1.05 0.00 0.81 0.00 0.00 K intron_retention CG2694,I_chrX_2609471_2609546,RI_chrX_2622297_2622430,RI_chrX_2622435_2622577 chrX + chrX_2609467_2609546 chrX_2609466_2609467;chrX_2609546_2609547 chrX_2609371_2609466;chrX_2609547_2609646 0.00 NA NA 26.32 NA 0.00 NA 6.25 0.00 14.29 NA 0.00 NA 0.00 12.50 9.52 NA 0.00 0.00 12.00 NA 0.00 20.00 4.17 NA NA 15.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA 6.67 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 12.50 10.53 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention step,I_chr2L_21743972_21757163,RI_chr2L_21747333_21756553,CREI_chr2L_21753815_21756553 chr2L - chr2L_21756628_21757163 chr2L_21756627_21756628;chr2L_21757163_21757164 chr2L_21756554_21756627;chr2L_21757164_21757263 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7611,I_chr3L_21516702_21517821 chr3L + chr3L_21516399_21517821 chr3L_21516398_21516399;chr3L_21517821_21517822 chr3L_21516383_21516398;chr3L_21517822_21517920 63.07 NA NA 53.33 NA NA 70.59 53.85 72.22 NA NA 56.25 NA NA 54.55 54.55 NA NA NA 68.75 NA 50.00 64.29 NA NA NA 63.64 90.00 80.00 NA NA NA NA 58.33 NA NA 62.50 NA NA 53.33 NA 65.00 NA 50.00 NA NA NA NA 64.29 NA NA NA NA NA 63.64 NA NA NA K jcn_only_AA eIF-4a,I_chr2L_5985221_5985289 chr2L + chr2L_5985221_5985289;chr2L_5985221_5985338 chr2L_5985221_5985342 chr2L_5985121_5985220;chr2L_5985343_5985389 1.01 1.27 0.95 1.14 0.88 1.14 1.41 0.93 1.18 0.93 0.91 1.14 0.86 0.65 1.33 1.16 1.05 1.46 1.26 0.86 0.94 0.52 0.96 1.16 0.74 0.95 1.17 0.87 1.30 0.45 1.19 1.16 0.73 1.14 0.99 0.79 1.35 0.88 1.16 0.54 0.79 1.01 1.35 1.12 1.13 0.78 0.92 1.16 0.96 0.98 0.96 1.14 1.17 1.33 1.19 1.01 1.19 0.89 K intron_retention Pten,I_chr2L_10256507_10256803,F_chr2L_10259663_10260253 chr2L - chr2L_10260585_10260741 chr2L_10260584_10260585;chr2L_10260741_10260742 chr2L_10260254_10260584;chr2L_10260742_10260850 92.31 100.00 90.00 95.24 NA NA 95.24 100.00 95.45 NA NA 88.89 92.31 93.33 100.00 95.65 100.00 NA 83.33 96.00 NA 88.89 92.31 NA NA NA 100.00 NA 88.89 91.67 NA NA 100.00 94.74 88.89 87.50 NA 90.91 87.50 90.00 91.67 95.00 88.89 91.67 NA 100.00 NA 81.25 95.24 NA 92.31 81.82 NA NA 90.91 NA NA 90.00 K mutually_exclusive pho,RI_chr4_1193657_1194431,I_chr4_1193830_1194784,EI_chr4_1193830_1195360,RI_chr4_1193830_1195384,I_chr4_1193830_1201673 chr4 - chr4_1193657_1194431,chr4_1194724_1194784 chr4_1193657_1193709,chr4_1193830_1194784 chr4_1194432_1194723 chr4_1193710_1193829 chr4_1193557_1193656;chr4_1194785_1194884 80.00 NA 75.00 85.71 50.00 NA 83.33 50.00 87.50 NA NA 80.00 NA NA NA 75.00 NA NA NA 90.91 NA NA 62.50 NA NA 66.67 80.00 NA NA NA NA NA NA 83.33 NA NA NA NA 20.00 83.33 NA 83.33 NA NA NA NA NA NA NA NA NA 80.00 25.00 80.00 80.00 NA NA NA K intron_retention dbo chr3L + chr3L_15823559_15823678 chr3L_15823558_15823559;chr3L_15823678_15823679 chr3L_15823371_15823558;chr3L_15823679_15824009 92.59 82.35 89.47 88.46 90.91 86.67 95.24 87.50 84.62 100.00 93.33 78.12 90.48 100.00 100.00 95.83 92.31 100.00 90.00 96.77 100.00 78.79 96.15 90.91 76.47 94.44 89.66 60.00 90.48 94.44 92.86 92.31 92.31 95.83 94.74 65.00 78.95 94.12 100.00 77.42 100.00 94.29 100.00 84.21 80.00 100.00 100.00 100.00 92.59 93.33 94.74 94.44 66.67 78.57 100.00 90.48 93.33 83.33 K jcn_only_AD CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908142_9908424,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907784_9908424;chr2L_9907784_9908531;chr2L_9907784_9908405 chr2L_9907784_9908307 chr2L_9907756_9907783;chr2L_9908532_9908619 3.28 3.33 6.38 2.22 7.89 3.57 4.48 5.56 5.52 NA 2.94 3.00 2.17 1.56 6.25 11.11 4.55 4.62 4.94 1.49 5.13 2.61 2.65 4.05 1.89 1.79 1.09 5.88 1.79 2.82 3.70 6.67 1.41 5.00 7.46 0.00 2.50 3.23 4.35 3.92 5.71 3.23 7.32 3.53 3.33 0.00 0.00 0.00 3.03 5.56 3.23 2.00 3.92 5.71 2.44 2.04 0.00 0.00 K intron_retention CG5068 chr3L + chr3L_8980059_8980126 chr3L_8980058_8980059;chr3L_8980126_8980127 chr3L_8979812_8980058;chr3L_8980127_8980325 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 1.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG1308,CG1295 chr3L + chr3L_4195388_4195840 chr3L_4195388_4195595;chr3L_4195716_4195840 chr3L_4195596_4195715 chr3L_4195360_4195387;chr3L_4195841_4195990 100.00 100.00 100.00 92.86 NA 100.00 100.00 100.00 89.47 NA 83.33 100.00 87.50 100.00 100.00 83.33 100.00 100.00 NA 100.00 100.00 100.00 93.75 85.71 100.00 NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 87.50 90.00 100.00 90.00 92.31 NA 94.44 NA 88.89 NA NA NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA NA K alternative_acceptor ct chrX + chrX_7554924_7554995 chrX_7554924_7554992 chrX_7554439_7554923;chrX_7554996_7555171 90.00 94.12 92.31 90.00 93.75 100.00 82.35 92.31 87.50 90.91 73.68 89.29 91.67 92.86 93.33 88.24 76.47 94.44 93.33 78.12 90.00 93.33 76.67 83.33 88.89 93.33 93.33 80.00 NA 60.00 90.00 NA 100.00 87.10 88.89 84.62 92.31 94.12 80.00 91.67 NA 80.00 100.00 95.00 NA NA NA 71.43 87.50 NA 82.61 88.89 NA NA 76.47 88.89 100.00 NA K alternative_acceptor CG42541,F_chrX_3804144_3804471,F_chrX_3805550_3805649 chrX - chrX_3799931_3800237 chrX_3799934_3800237 chrX_3800238_3800291;chrX_3799825_3799930 84.62 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 84.62 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor RpS7,E_chr3R_26032339_26034298 chr3R - chr3R_26034380_26034638 chr3R_26034380_26034635 chr3R_26034299_26034379;chr3R_26034639_26034688 0.96 1.85 0.43 0.39 0.93 0.88 1.89 0.17 0.00 1.06 1.22 1.42 2.78 1.12 1.46 2.08 1.41 2.29 1.30 1.31 0.00 0.59 4.26 4.62 3.33 1.80 0.00 0.00 0.96 2.82 1.26 0.17 0.19 0.63 0.00 0.00 2.13 0.00 6.00 0.90 0.37 0.57 2.15 1.01 0.52 2.01 4.88 0.43 2.37 5.56 0.00 0.00 0.00 0.00 0.96 0.00 0.86 0.30 K intron_retention CG8451 chr2L - chr2L_8202300_8202357 chr2L_8202299_8202300;chr2L_8202357_8202358 chr2L_8202232_8202299;chr2L_8202358_8202409 2.50 9.09 0.00 10.00 NA 0.00 2.13 9.09 10.42 NA 0.00 9.68 0.00 0.00 0.00 14.71 6.25 0.00 0.00 3.51 0.00 0.00 2.86 4.26 0.00 NA 4.17 15.38 0.00 5.00 0.00 NA NA 6.25 0.00 0.00 0.00 0.00 0.00 6.25 NA 4.35 7.14 0.00 NA 6.67 6.45 NA 13.64 8.00 4.17 3.85 0.00 0.00 11.54 0.00 0.00 NA K intron_retention Prosalpha5,RI_chr2R_13310877_13311160 chr2R + chr2R_13300349_13300409 chr2R_13300348_13300349;chr2R_13300409_13300410 chr2R_13300293_13300348;chr2R_13300410_13300548 0.00 0.00 2.13 6.72 0.00 0.00 7.20 1.33 1.53 0.00 0.00 0.63 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.97 0.00 9.62 7.44 6.49 0.00 14.04 2.70 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 2.11 3.06 6.25 2.73 0.00 0.00 0.00 2.74 0.00 0.00 0.58 1.19 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 K intron_retention Uhg5,noncoding_6835,snoRNA:Or-CD4 chr2R + chr2R_10511726_10511907 chr2R_10511725_10511726;chr2R_10511907_10511908 chr2R_10511662_10511725;chr2R_10511908_10511999 0.00 NA NA 0.00 NA NA 6.06 0.00 14.29 NA NA 0.00 0.00 0.00 NA 5.00 NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 4.17 NA NA NA NA NA NA 2.78 0.00 NA NA NA NA NA NA 0.00 0.00 K alternative_last_exon spi,I_chr2L_19569183_19577185,I_chr2L_19569227_19572142,I_chr2L_19569227_19577173 chr2L - chr2L_19569227_19577185 chr2L_19571768_19577185 chr2L_19567812_19569226 chr2L_19571572_19571767 chr2L_19577186_19577273 59.61 59.34 70.18 38.24 48.32 62.07 62.76 61.80 60.61 32.08 62.42 50.00 68.33 65.18 54.94 66.22 66.06 60.98 74.44 59.61 66.84 39.34 66.50 56.60 43.36 64.77 57.34 21.11 18.58 61.32 64.29 54.84 72.32 69.57 76.65 58.26 40.00 58.77 47.65 50.96 63.76 62.10 66.36 53.91 43.50 70.87 51.55 62.81 58.26 50.80 62.20 57.21 51.27 58.05 66.02 56.48 60.58 54.64 K alternative_acceptor l(2)gl,I_chr2L_17213_21135,RI_chr2L_20021_20830,I_chr2L_20974_21065 chr2L - chr2L_20016_21065 chr2L_20021_21065 chr2L_21066_21106;chr2L_19921_20015 87.50 NA NA NA NA NA NA 87.50 83.33 NA NA 92.31 NA NA NA 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 81.82 NA NA NA NA NA NA NA NA NA 87.50 NA NA NA NA 90.91 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG1316 chr3L + chr3L_4285921_4286171 chr3L_4286002_4286171 chr3L_4286172_4286865;chr3L_4285847_4285920 0.00 0.00 0.00 0.00 1.41 1.32 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.82 0.00 0.00 0.86 0.00 0.00 0.00 0.00 0.00 8.05 0.00 0.00 0.39 0.23 1.18 0.00 1.03 0.86 0.00 0.77 0.62 0.00 0.93 0.00 0.00 0.72 0.69 0.00 0.00 0.98 1.50 0.93 0.00 0.00 0.00 1.09 0.00 0.00 0.33 K jcn_only_AA None chrU - chrU_7542937_7543011 chrU_7542952_7543011 1.41 1.56 1.88 1.53 0.99 0.55 1.11 2.13 1.55 1.14 2.59 1.12 1.41 1.29 1.33 2.66 2.01 0.99 1.26 0.94 1.39 1.81 0.98 1.68 1.98 2.05 1.02 0.57 0.88 0.89 1.70 1.58 1.29 1.33 1.04 0.63 1.23 1.87 0.94 2.20 1.47 1.28 2.03 1.80 1.41 0.99 1.00 1.50 1.72 0.67 2.10 1.32 1.62 1.20 1.42 2.08 1.72 2.04 K mutually_exclusive I_chr3L_1494947_1496080,pUf68,I_chr3L_1499710_1499771,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1499338_1499771,chr3L_1499880_1501798;chr3L_1499338_1501350,chr3L_1501407_1501798 chr3L_1499338_1500244,chr3L_1500389_1501798 chr3L_1499772_1499879;chr3L_1501351_1501406 chr3L_1500245_1500388 chr3L_1499043_1499337;chr3L_1501799_1501892 75.00 NA 60.00 70.00 NA NA NA 75.00 81.82 83.33 NA 76.92 NA NA 75.00 80.00 NA NA 75.00 77.78 NA 85.71 45.45 80.00 66.67 62.50 85.71 63.64 NA NA 75.00 NA 40.00 80.00 80.00 100.00 NA 50.00 33.33 40.00 57.14 75.00 NA 75.00 80.00 85.71 60.00 50.00 77.78 50.00 50.00 66.67 NA 100.00 71.43 50.00 75.00 80.00 K jcn_only_AA CG8080,RI_chr2R_4978542_4978911,REI_chr2R_4978545_4978911,REI_chr2R_4979159_4979234,I_chr2R_4979276_4979936 chr2R - chr2R_4978545_4978911;chr2R_4978557_4978911 chr2R_4978542_4978911 chr2R_4978912_4979011;chr2R_4978445_4978541 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 NA 0.00 0.00 8.00 1.96 0.00 0.00 3.57 4.35 0.00 NA NA 0.00 2.94 8.33 6.45 0.00 NA 4.35 0.00 3.12 3.23 0.00 2.04 NA 0.00 6.52 2.08 7.32 4.55 8.00 0.00 0.00 0.00 1.85 1.67 3.85 0.00 4.62 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.90 K intron_retention Edem1,I_chrX_1798310_1798525,I_chrX_1798315_1798577 chrX - chrX_1798315_1798525 chrX_1798314_1798315;chrX_1798525_1798526 chrX_1798215_1798314;chrX_1798526_1798625 16.67 6.67 10.81 28.07 21.95 18.42 22.95 26.98 20.88 22.73 2.94 14.12 23.08 22.22 18.18 24.56 19.05 9.80 21.74 12.12 12.77 12.00 17.33 16.67 11.11 20.00 26.47 35.71 17.39 10.00 14.06 12.20 13.33 25.81 18.52 19.15 8.06 8.00 11.11 14.12 25.64 13.89 16.67 12.68 21.43 15.87 12.09 30.30 17.33 6.49 15.25 8.11 8.00 9.23 21.82 9.84 10.14 19.44 K alternative_last_exon CG5050 chr2L + chr2L_17454174_17464927 chr2L_17454174_17458475 chr2L_17464928_17464996 chr2L_17458476_17458775 chr2L_17453884_17454173 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention l(1)G0196,I_chrX_21890195_21895316,I_chrX_21900456_21904601 chrX + chrX_21896112_21897326 chrX_21896111_21896112;chrX_21897326_21897327 chrX_21895869_21896111;chrX_21897327_21897813 9.09 6.25 4.84 12.50 0.00 9.26 11.48 8.24 8.06 6.25 0.00 11.11 17.39 5.36 7.25 9.47 6.52 4.55 14.58 9.17 4.26 12.07 12.90 8.51 15.38 12.12 10.53 15.38 13.16 8.06 10.00 11.43 7.00 6.41 12.73 31.43 9.09 11.76 1.89 7.27 24.24 6.78 8.33 9.72 11.63 9.86 14.81 6.08 11.69 19.05 8.47 8.33 5.26 7.41 11.59 6.67 3.70 5.63 K intron_retention noncoding_21259,REI_chrX_828715_831973,TRAM,I_chrX_829418_830362,I_chrX_829743_831973 chrX + chrX_829743_830362 chrX_829742_829743;chrX_830362_830363 chrX_829643_829742;chrX_830363_830462 4.40 2.90 6.15 5.26 3.39 4.84 2.67 4.40 4.17 2.50 0.00 3.70 3.70 3.64 3.95 8.54 7.55 5.00 5.56 3.79 0.00 7.59 4.55 6.00 6.82 3.33 4.40 2.78 14.58 4.69 4.65 8.00 1.80 3.41 4.62 7.84 5.15 3.03 5.68 7.69 4.08 2.26 4.17 3.53 4.88 6.49 6.90 2.13 3.70 7.79 6.02 2.22 5.95 3.77 2.15 4.55 4.21 2.31 K alternative_last_exon Tequila chr3L + chr3L_9068723_9068771;chr3L_9068723_9080948 chr3L_9068723_9069957 chr3L_9068772_9069365;chr3L_9080949_9083048 chr3L_9069958_9070727 chr3L_9068164_9068722 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention dlg1,I_chrX_11298230_11299306 chrX + chrX_11293850_11294820 chrX_11293849_11293850;chrX_11294820_11294821 chrX_11293775_11293849;chrX_11294821_11294865 0.00 0.00 0.00 0.00 0.00 0.00 29.41 0.00 3.85 0.00 NA 0.00 4.00 0.00 2.63 1.92 0.00 0.00 0.00 1.64 NA 0.00 3.39 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 3.03 2.94 2.50 0.00 1.75 0.00 0.00 0.00 1.92 2.78 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 K jcn_only_AA CG31999,I_chr4_238453_238873,I_chr4_238809_238873,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_238121_238873;chr4_238809_238873 chr4_238453_238873 chr4_238874_238973;chr4_238032_238120 0.00 1.67 0.00 0.00 3.45 0.00 0.00 0.72 1.04 0.00 0.00 0.54 1.90 1.04 1.23 0.72 0.00 2.22 1.63 0.43 3.92 0.00 2.08 1.85 0.00 0.00 2.56 NA 0.00 2.08 1.16 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 1.35 0.00 1.09 0.00 2.22 0.00 0.00 1.43 0.00 0.00 1.75 0.00 0.00 0.00 0.00 1.44 0.00 1.10 0.98 K intron_retention didum,I_chr2R_3393005_3393348 chr2R + chr2R_3394292_3394353 chr2R_3394291_3394292;chr2R_3394353_3394354 chr2R_3394160_3394291;chr2R_3394354_3394882 0.00 0.00 0.00 8.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Galpha49B,I_chr2R_8501587_8501648,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8500357_8501648;chr2R_8500357_8501071 chr2R_8500357_8501759 chr2R_8500333_8500356;chr2R_8501760_8501850 2.13 0.00 0.00 7.69 0.00 10.00 3.03 2.70 2.13 0.00 7.69 1.85 5.56 4.35 6.67 2.13 5.26 8.33 4.35 0.00 0.00 0.00 0.00 6.67 0.00 5.56 0.00 0.00 0.00 0.00 5.88 0.00 10.00 0.00 0.00 7.69 0.00 0.00 11.11 8.00 11.11 9.68 0.00 7.14 0.00 6.25 0.00 4.55 5.00 0.00 0.00 7.14 0.00 0.00 5.88 14.29 0.00 0.00 K jcn_only_AA CG5524,I_chr3R_20017846_20017911,I_chr3R_20018643_20018703 chr3R - chr3R_20018643_20018703 chr3R_20018647_20018703 chr3R_20018704_20018803;chr3R_20018543_20018642 100.00 95.83 100.00 100.00 NA 100.00 96.43 97.50 97.44 85.00 NA 100.00 100.00 96.30 100.00 100.00 NA 100.00 100.00 98.08 NA 100.00 96.88 96.00 NA NA 96.67 NA 96.55 92.86 NA 100.00 94.74 100.00 NA NA 100.00 100.00 100.00 100.00 NA 97.96 100.00 100.00 NA 92.59 NA 100.00 100.00 100.00 100.00 100.00 NA NA 97.30 NA NA 100.00 K intron_retention MB8.chr3R.pasa.66,alpha-Est7 chr3R - chr3R_3346798_3346855 chr3R_3346797_3346798;chr3R_3346855_3346856 chr3R_3346234_3346797;chr3R_3346856_3347006 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 7.69 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention unc-13,RI_chr4_892852_895828,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_892701_892752 chr4_892700_892701;chr4_892752_892753 chr4_892538_892700;chr4_892753_892851 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 3.92 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.17 0.00 0.00 0.00 2.70 3.92 0.00 0.00 4.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17471,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1216889_1216945 chr4_1216888_1216889;chr4_1216945_1216946 chr4_1216814_1216888;chr4_1216946_1217001 0.00 0.00 0.00 15.38 0.00 7.69 0.00 0.00 0.00 NA NA 0.00 0.00 6.90 0.00 2.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K jcn_only_AA CG7987,RI_chr3R_10400799_10401492 chr3R - chr3R_10400782_10401492;chr3R_10400799_10401492 chr3R_10400608_10401492 chr3R_10401493_10401559;chr3R_10400270_10400607 52.01 61.70 55.81 58.93 44.44 65.79 33.77 37.14 35.37 NA 51.85 41.75 3.85 36.00 48.98 55.56 47.83 57.14 26.42 58.02 68.18 52.54 62.71 65.22 50.00 23.68 55.10 76.47 41.67 55.00 52.53 52.17 47.83 53.57 45.95 52.94 54.55 70.00 58.54 32.93 NA 50.00 41.18 48.39 76.19 46.88 48.48 40.74 47.42 NA 53.23 39.39 47.83 57.14 53.57 72.41 63.33 48.39 K jcn_only_AD CG9894,RE_chr2L_2752712_2753371,I_chr2L_2753119_2753371,RI_chr2L_2755946_2756007 chr2L + chr2L_2752712_2753371 chr2L_2752838_2753371 chr2L_2753372_2753471;chr2L_2752651_2752711 100.00 100.00 100.00 99.09 100.00 99.33 100.00 99.36 100.00 98.21 100.00 99.09 100.00 100.00 100.00 99.51 98.91 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 99.37 100.00 100.00 99.48 99.39 100.00 96.97 98.65 100.00 100.00 100.00 100.00 98.32 100.00 100.00 100.00 100.00 99.38 100.00 100.00 99.67 96.36 98.18 98.15 100.00 86.36 100.00 100.00 97.37 99.55 K intron_retention Su(var)2-HP2 chr2R - chr2R_10503906_10504014 chr2R_10503905_10503906;chr2R_10504014_10504015 chr2R_10501278_10503905;chr2R_10504015_10504266 0.00 NA NA 0.00 NA NA 0.00 12.50 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA K jcn_only_AD Ptp99A,I_chr3R_25302126_25302175 chr3R + chr3R_25302126_25307188 chr3R_25305548_25307188 chr3R_25307189_25307478;chr3R_25302026_25302125 13.04 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 13.04 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention deltaCOP,I_chrX_1754047_1754089,I_chrX_1755132_1755191,E_chrX_1755139_1755188,I_chrX_1757755_1757801 chrX - chrX_1755132_1755191 chrX_1755131_1755132;chrX_1755191_1755192 chrX_1755039_1755131;chrX_1755192_1755288 94.74 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 94.74 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG11534,Atg12 chr3L + chr3L_12126077_12126128 chr3L_12126076_12126077;chr3L_12126128_12126129 chr3L_12125301_12126076;chr3L_12126129_12126936 0.00 NA NA NA NA NA 5.56 0.00 4.35 NA NA 0.00 NA NA 0.00 NA NA 0.00 NA 9.52 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA 0.00 NA NA NA 12.50 NA NA 0.00 0.00 0.00 NA NA NA NA NA NA NA K alternative_donor Sans,RI_chr2R_8825985_8826072,I_chr2R_8826501_8826591 chr2R + chr2R_8824602_8825904;chr2R_8824595_8825904 chr2R_8824493_8825904 chr2R_8825905_8825980;chr2R_8824445_8824492 0.00 NA NA 0.00 NA NA NA NA 14.29 NA 0.00 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 11.11 0.00 16.67 0.00 NA 0.00 0.00 0.00 NA 0.00 14.29 0.00 7.69 K alternative_acceptor CG9293,RI_chr2L_13386386_13386487,I_chr2L_13394941_13395015 chr2L - chr2L_13386258_13386487 chr2L_13386386_13386487 chr2L_13386488_13386508;chr2L_13386099_13386257 16.67 NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 K jcn_only_AD None chrU - chrU_7543573_7543678 chrU_7543573_7543639 99.54 99.70 99.14 99.30 99.35 99.12 99.48 99.57 99.79 99.53 99.79 99.59 99.30 99.43 99.65 99.40 99.93 99.37 99.65 99.39 99.67 99.90 99.20 99.60 99.61 99.74 99.82 99.21 99.42 99.45 99.41 99.29 99.19 99.55 99.58 99.17 99.56 99.78 99.75 99.48 99.41 99.73 99.75 99.82 99.34 99.48 99.79 98.92 99.54 99.70 99.46 99.67 99.47 99.54 99.55 99.81 99.52 99.59 K alternative_last_exon CG34383,RI_chr3R_9587500_9588422 chr3R + chr3R_9586085_9587029;chr3R_9586085_9588422 chr3R_9586085_9586407 chr3R_9587030_9587536;chr3R_9588423_9590485 chr3R_9586408_9586663 chr3R_9586009_9586084 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA K intron_retention Mtch,RI_chr3L_184729_185366,I_chr3L_185367_185925 chr3L + chr3L_184682_184774 chr3L_184681_184682;chr3L_184774_184775 chr3L_184674_184681;chr3L_184775_185000 70.97 83.33 63.64 78.12 47.06 64.71 70.00 75.00 51.11 66.67 55.00 65.85 50.00 60.71 54.29 70.97 63.64 70.00 69.57 68.89 52.38 87.50 95.45 85.71 83.33 64.00 92.86 90.00 96.00 80.00 74.29 55.56 76.92 56.10 92.31 93.75 83.33 85.00 75.00 70.00 68.42 55.32 54.55 76.47 48.15 75.76 93.33 63.64 63.83 91.67 80.56 76.47 92.31 100.00 52.78 92.31 100.00 64.71 K intron_retention CG15602 chrX + chrX_15693755_15693825 chrX_15693754_15693755;chrX_15693825_15693826 chrX_15693640_15693754;chrX_15693826_15694070 0.00 0.00 8.00 12.00 NA 0.00 8.00 8.70 0.00 NA 0.00 0.00 NA 0.00 0.00 8.70 NA 0.00 7.69 4.35 6.25 4.17 0.00 4.88 0.00 12.50 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 2.78 NA 0.00 0.00 0.00 0.00 10.53 0.00 NA 3.33 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 N alternative_acceptor CG7091,RI_chr3R_8805541_8805680,I_chr3R_8809774_8809832 chr3R + chr3R_8804251_8804598 chr3R_8804251_8804579 chr3R_8803691_8804250;chr3R_8804599_8804832 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 NA 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA 21.43 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 2.56 NA 0.00 0.00 0.00 7.69 0.00 0.00 0.00 NA N intron_retention CG42394,noncoding_15936,E_chr3R_6675742_6676058 chr3R + chr3R_6677211_6677262 chr3R_6677210_6677211;chr3R_6677262_6677263 chr3R_6677007_6677210;chr3R_6677263_6677270 61.11 48.28 73.68 72.22 100.00 67.65 66.67 59.38 64.49 NA 38.89 70.31 33.33 64.81 52.38 62.04 59.18 56.52 55.41 66.67 NA NA 70.73 60.71 100.00 70.21 69.23 100.00 100.00 NA 61.36 59.52 58.06 68.42 62.50 100.00 58.82 57.14 100.00 57.69 78.57 64.91 66.67 58.14 61.11 52.86 50.00 50.00 69.23 60.87 56.25 56.00 55.56 66.67 50.00 53.33 59.18 52.78 K intron_retention hts,I_chr2R_15311185_15312327,I_chr2R_15311303_15311544,I_chr2R_15311303_15312026 chr2R - chr2R_15306111_15312327 chr2R_15306110_15306111;chr2R_15312327_15312328 chr2R_15306062_15306110;chr2R_15312328_15312346 10.00 NA NA NA NA NA 21.43 NA 10.00 NA NA NA NA NA NA 17.65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention klett chrX - chrX_21497298_21497339 chrX_21497297_21497298;chrX_21497339_21497340 chrX_21496181_21497297;chrX_21497340_21497917 100.00 NA NA NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA 100.00 NA NA 88.89 NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA 100.00 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA K intron_retention CycG,I_chr3R_27427074_27427128,RE_chr3R_27427953_27436598 chr3R - chr3R_27427074_27427137 chr3R_27427073_27427074;chr3R_27427137_27427138 chr3R_27426974_27427073;chr3R_27427138_27427228 0.00 0.00 0.00 0.19 0.00 0.00 0.09 0.20 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.27 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.18 1.00 0.00 0.00 0.00 0.00 0.32 0.09 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.13 0.00 0.00 0.00 0.00 0.20 0.19 0.15 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Nacalpha,I_chr2R_8648027_8648303 chr2R - chr2R_8648027_8648309;chr2R_8648027_8648231 chr2R_8648027_8648305 chr2R_8647927_8648026;chr2R_8648310_8648314 21.98 10.00 27.27 33.33 29.41 42.86 30.00 33.33 12.50 NA 25.00 21.43 9.09 0.00 18.75 11.76 25.00 27.27 8.33 13.64 10.00 37.50 21.43 15.38 NA 17.65 22.22 78.12 22.22 44.44 18.75 28.57 33.33 16.67 14.29 NA 12.50 8.33 20.00 86.92 50.00 17.39 40.00 88.10 30.77 26.67 20.00 30.00 24.00 23.08 11.11 0.00 71.11 16.67 18.75 20.00 21.74 39.13 K intron_retention scaf6,EI_chr3L_17037760_17037808 chr3L - chr3L_17032731_17033237 chr3L_17032730_17032731;chr3L_17033237_17033238 chr3L_17032656_17032730;chr3L_17033238_17033310 20.00 13.33 41.67 7.41 NA NA 25.93 19.23 20.00 NA NA 28.00 NA 33.33 NA 39.39 NA NA 14.29 17.65 NA 41.67 0.00 NA NA NA 29.41 NA NA NA NA NA NA 33.33 14.29 15.38 NA NA NA 25.00 NA 15.38 25.00 NA NA NA NA NA 31.25 7.14 16.67 NA NA NA NA NA NA NA K intron_retention cwo,noncoding_15870 chr3R + chr3R_6223407_6223468 chr3R_6223406_6223407;chr3R_6223468_6223469 chr3R_6223089_6223406;chr3R_6223469_6226057 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 5.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.26 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9044 chr2L + chr2L_5949991_5950124 chr2L_5949990_5949991;chr2L_5950124_5950125 chr2L_5949835_5949990;chr2L_5950125_5951819 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 8.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3L_834336_834491,CG13887,Gr61a chr3L + chr3L_838625_839249 chr3L_838624_838625;chr3L_839249_839250 chr3L_838049_838624;chr3L_839250_839740 0.73 0.76 1.25 0.83 0.49 0.69 0.50 0.78 0.75 0.61 0.88 1.49 2.10 0.56 0.70 0.99 1.09 0.55 0.86 0.53 0.72 6.92 0.48 0.93 0.00 0.57 1.45 1.40 5.94 0.35 1.06 0.98 0.50 0.33 1.05 0.82 0.14 0.00 0.93 0.87 0.69 0.73 0.61 0.97 0.54 0.81 0.87 0.69 0.38 1.23 0.98 0.64 0.47 1.00 0.35 0.41 0.13 0.22 K jcn_only_AA CG8468 chr2R + chr2R_10107548_10108112;chr2R_10107548_10108091 chr2R_10107548_10114915 chr2R_10107405_10107547 0.00 0.00 0.00 1.98 0.00 0.63 0.00 0.00 0.29 0.00 0.00 0.00 0.00 1.12 0.62 0.41 0.00 1.84 0.00 0.00 0.00 0.60 0.00 0.65 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.60 0.00 0.28 0.00 0.55 1.25 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention sqd,I_chr3R_9462248_9471474,CR33328,I_chr3R_9468150_9468236,I_chr3R_9470417_9471474 chr3R - chr3R_9462248_9471474 chr3R_9462247_9462248;chr3R_9471474_9471475 chr3R_9462148_9462247;chr3R_9471475_9471574 83.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette Adar,I_chrX_1668256_1682696,I_chrX_1674594_1674717 chrX + chrX_1669772_1672644 chrX_1669772_1672405;chrX_1672594_1672644 chrX_1672406_1672593 chrX_1669733_1669771;chrX_1672645_1672732 48.48 46.15 35.29 20.00 54.55 42.86 61.11 53.33 48.48 NA 100.00 23.81 66.67 43.75 37.50 58.82 50.00 62.50 45.00 46.67 80.00 45.45 71.43 53.85 40.00 60.00 41.67 NA NA 36.36 43.75 NA 44.44 55.56 55.56 18.18 36.36 50.00 66.67 55.00 33.33 39.39 53.85 55.56 NA 38.46 NA 46.67 53.12 NA 54.55 83.33 NA NA 43.75 NA 66.67 30.77 K intron_retention CG6782,CG6783 chr3R - chr3R_7390434_7392639 chr3R_7390433_7390434;chr3R_7392639_7392640 chr3R_7390162_7390433;chr3R_7392640_7392746 0.78 0.54 0.60 0.80 0.00 0.34 1.83 0.30 0.70 1.89 2.26 0.48 0.00 0.00 0.61 0.00 0.00 0.62 0.00 0.32 0.48 1.34 1.91 1.78 1.08 0.87 1.34 4.51 2.33 2.45 0.36 0.73 1.67 0.49 0.78 3.53 1.45 1.53 0.22 3.01 0.93 0.20 0.00 0.91 0.59 1.74 1.83 0.71 0.63 1.95 3.06 1.52 1.56 1.51 0.00 0.88 0.71 0.26 K jcn_only_AD CG11658,I_chr3L_11704048_11704107 chr3L - chr3L_11700672_11701507;chr3L_11700672_11701407 chr3L_11700672_11701491 chr3L_11700405_11700671;chr3L_11701508_11701663 8.04 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 11.54 NA NA NA 4.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor nct,I_chr3R_20679262_20679308 chr3R + chr3R_20679262_20679324;chr3R_20679262_20679308 chr3R_20679262_20679333 chr3R_20679193_20679261;chr3R_20679334_20679393 1.15 2.33 1.45 0.91 0.00 1.85 1.03 1.04 2.72 0.00 1.49 1.72 1.89 2.17 0.00 1.35 0.00 6.15 1.82 3.28 0.00 2.67 0.78 1.72 0.00 0.00 0.92 0.00 2.78 1.49 0.00 0.00 2.86 0.00 0.00 1.72 0.88 2.38 0.89 1.12 1.72 0.84 0.00 1.12 6.56 0.00 1.45 0.00 1.15 1.01 0.80 1.75 1.85 1.61 1.47 1.54 2.33 0.00 K intron_retention torp4a chrX - chrX_4543548_4543605 chrX_4543547_4543548;chrX_4543605_4543606 chrX_4542975_4543547;chrX_4543606_4544015 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2393243 chrX_2387249_2388436;chrX_2388671_2389073;chrX_2389272_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2393243 chrX_2388437_2388670;chrX_2389074_2389271;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2393244_2393291 16.67 NA NA NA NA NA NA NA 16.67 NA NA 7.69 NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 11.11 NA NA 6.67 NA 20.00 NA 16.67 NA NA NA 16.67 16.67 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG2875 chrX - chrX_3467334_3467400 chrX_3467337_3467400 chrX_3467401_3467615;chrX_3466628_3467333 90.91 84.62 91.67 80.00 NA 100.00 88.89 95.45 96.30 NA NA 100.00 90.91 88.89 91.67 90.91 90.00 90.91 100.00 96.30 NA NA 80.00 93.33 NA 88.89 100.00 100.00 NA 100.00 100.00 NA NA 90.48 NA NA 90.91 NA NA 90.00 NA 94.74 88.89 83.33 NA 88.89 84.62 88.89 84.62 66.67 93.75 100.00 88.89 NA 93.33 90.00 100.00 90.00 K jcn_only_AD CG4272 chr2L + chr2L_2365902_2366274;chr2L_2365391_2366274 chr2L_2365729_2366274 chr2L_2366275_2368213;chr2L_2365332_2365390 77.28 73.08 NA 79.49 76.19 NA 67.57 83.33 78.57 91.30 78.26 70.27 75.00 95.00 85.19 75.00 72.73 76.19 70.97 90.00 NA 54.17 77.08 77.42 NA 65.22 70.83 80.00 NA NA NA NA 78.57 76.00 86.36 71.43 82.86 86.67 90.00 80.95 NA 77.14 80.95 85.29 NA NA NA 76.92 70.97 84.00 76.19 85.19 NA NA 73.08 NA NA NA K jcn_only_AA CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042888_5043077;chr2L_5043017_5043077;chr2L_5042891_5043077 chr2L_5042885_5043077 chr2L_5043078_5043083 0.00 NA 0.00 3.12 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.55 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA NA 4.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA K intron_retention hrg chr2R - chr2R_15555984_15556622 chr2R_15555983_15555984;chr2R_15556622_15556623 chr2R_15555859_15555983;chr2R_15556623_15556651 6.67 NA NA NA NA NA NA NA 13.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG42588 chr3L + chr3L_12811626_12811700 chr3L_12811626_12811681 chr3L_12810479_12811625;chr3L_12811701_12812337 65.00 NA NA NA NA NA 68.00 60.00 64.52 NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA NA NA NA NA NA 62.50 NA NA NA NA NA NA 70.00 NA NA NA NA NA NA NA 65.00 NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG15715,RI_chr3L_15829349_15830356,I_chr3L_15830026_15830356,RI_chr3L_15830030_15830191,RI_chr3L_15830229_15830356 chr3L - chr3L_15830229_15830356;chr3L_15830030_15830356 chr3L_15830026_15830356 chr3L_15830357_15830456;chr3L_15830007_15830025 0.00 0.00 1.11 0.00 0.00 3.70 1.16 0.00 1.69 2.63 2.78 0.00 0.00 0.00 0.00 2.33 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 1.47 1.75 3.70 4.23 0.00 3.92 0.00 0.00 0.00 0.00 1.96 0.00 2.56 0.52 0.00 0.00 3.77 1.23 1.16 0.00 2.88 0.00 0.00 K intron_retention pan chr4 + chr4_106560_107642 chr4_106559_106560;chr4_107642_107643 chr4_106479_106559;chr4_107643_107792 0.00 0.00 5.13 4.71 0.00 0.00 3.85 0.00 2.61 0.00 2.78 2.60 5.56 0.00 2.56 2.94 0.00 0.00 3.92 0.00 0.00 10.00 1.89 0.00 0.00 0.00 0.00 0.00 12.00 0.00 0.00 NA 3.70 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 1.19 2.94 0.00 NA 0.00 NA 0.00 3.33 12.50 5.88 5.56 NA NA 2.00 15.38 NA 5.00 K alternative_last_exon CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157794_157864 chr4 + chr4_159201_159572;chr4_159201_160895 chr4_159201_160447 chr4_159573_159641;chr4_160896_162753 chr4_160448_160716 chr4_159000_159200 0.86 0.00 0.71 2.10 1.09 0.00 0.73 1.25 0.56 0.00 1.05 0.74 0.85 2.00 1.99 0.71 0.68 0.86 1.02 0.75 1.06 2.33 1.52 0.98 0.00 0.70 0.00 0.00 0.00 0.94 1.10 0.00 0.00 1.27 1.14 0.00 0.00 1.43 1.23 0.62 0.00 0.70 0.68 0.78 3.70 0.87 1.35 0.78 1.20 1.47 0.74 1.10 0.00 1.82 1.12 1.32 1.20 1.49 K intron_retention ATPsyn-Cf6,I_chr3R_19181508_19181563,I_chr3R_19181524_19181702 chr3R - chr3R_19181508_19181702 chr3R_19181507_19181508;chr3R_19181702_19181703 chr3R_19181424_19181507;chr3R_19181703_19181733 0.80 0.74 0.88 1.25 0.24 0.74 2.20 0.37 1.15 0.00 1.58 1.03 1.30 0.82 0.38 1.23 0.96 0.92 1.04 0.43 0.48 1.36 1.32 2.58 1.16 1.10 1.72 0.00 0.73 1.56 0.78 0.30 0.47 0.71 1.75 0.00 1.28 0.00 0.00 0.00 1.44 0.36 0.98 1.43 0.67 0.78 0.00 0.80 1.27 1.76 0.78 0.82 0.00 0.63 0.81 0.43 0.27 0.40 K alternative_acceptor CG10153,RI_chr2R_10644944_10645110 chr2R - chr2R_10644944_10645110 chr2R_10645056_10645110 chr2R_10645111_10645175;chr2R_10644844_10644943 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG7337,I_chr2L_1910010_1910066,I_chr2L_1938620_1938887,I_chr2L_1942183_1942233 chr2L + chr2L_1932148_1933805 chr2L_1932147_1932148;chr2L_1933805_1933806 chr2L_1932056_1932147;chr2L_1933806_1934049 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA K intron_retention unc-13,I_chr4_904268_904671,CRE_chr4_904268_906381,I_chr4_904268_919018,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_903989_904192 chr4_903988_903989;chr4_904192_904193 chr4_903802_903988;chr4_904193_904267 1.82 1.89 3.64 2.37 0.00 2.27 2.48 6.62 6.04 0.00 12.00 0.00 0.00 6.35 1.59 6.00 9.62 1.82 0.00 5.22 3.57 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 3.85 0.00 9.09 0.00 5.66 2.22 0.00 0.00 0.00 0.00 4.82 0.00 5.93 4.26 0.00 0.00 2.63 5.41 0.00 7.53 3.23 1.69 3.85 0.00 12.50 3.39 0.00 0.00 5.00 K intron_retention lig,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3964798_3965235 chr2R_3964797_3964798;chr2R_3965235_3965236 chr2R_3964765_3964797;chr2R_3965236_3966123 14.43 9.52 11.90 13.79 14.81 22.22 27.27 21.05 20.00 10.71 15.38 16.36 15.38 12.00 13.79 20.69 10.53 8.82 9.68 12.09 10.00 15.00 12.12 8.75 9.80 NA 12.73 24.39 18.75 18.18 16.67 20.51 19.51 15.79 13.51 10.00 6.17 10.00 6.67 17.65 17.14 12.07 21.05 18.42 15.15 18.37 14.04 22.73 16.28 15.15 10.96 10.00 16.33 12.50 11.43 12.90 12.07 31.82 K jcn_only_AA CG31224,Cpsf73 chr3R - chr3R_14486963_14487033 chr3R_14486971_14487033 chr3R_14487034_14487476;chr3R_14486843_14486962 100.00 100.00 97.73 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 98.61 NA 100.00 100.00 99.08 96.00 98.08 100.00 100.00 100.00 97.44 100.00 97.96 98.59 100.00 98.28 100.00 98.48 100.00 98.51 98.41 100.00 100.00 98.65 100.00 98.65 100.00 100.00 97.73 100.00 100.00 98.59 100.00 100.00 98.75 98.78 97.06 100.00 100.00 100.00 100.00 98.94 100.00 K intron_retention sar1,I_chr3R_18185148_18185246 chr3R + chr3R_18184214_18184284 chr3R_18184213_18184214;chr3R_18184284_18184285 chr3R_18184094_18184213;chr3R_18184285_18184350 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA wee chr2L - chr2L_6913282_6913425 chr2L_6913366_6913425 chr2L_6913426_6913993;chr2L_6912945_6913281 0.00 0.00 0.00 7.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Jafrac1,I_chrX_13223890_13225154,I_chrX_13224064_13225154,RI_chrX_13224713_13225154 chrX + chrX_13223890_13225154 chrX_13223889_13223890;chrX_13225154_13225155 chrX_13223790_13223889;chrX_13225155_13225254 89.44 NA NA 60.00 NA NA 88.89 56.25 NA NA 88.89 90.00 NA NA 50.00 NA NA NA NA 72.73 NA 100.00 NA 100.00 NA NA 100.00 91.67 100.00 NA NA NA 90.00 60.00 NA NA NA NA NA 75.00 92.31 66.67 NA NA 92.86 80.00 NA 100.00 61.54 NA NA NA NA NA NA NA NA 90.91 K alternative_donor Nacalpha,I_chr2R_8648027_8648303 chr2R - chr2R_8648027_8648305;chr2R_8648027_8648309 chr2R_8648027_8648231 chr2R_8647927_8648026;chr2R_8648310_8648314 52.75 80.00 45.45 58.33 23.53 42.86 60.00 33.33 62.50 NA 50.00 71.43 63.64 83.33 56.25 70.59 62.50 36.36 58.33 54.55 50.00 50.00 71.43 38.46 NA 47.06 66.67 9.38 66.67 55.56 62.50 57.14 41.67 50.00 57.14 NA 62.50 75.00 50.00 10.28 37.50 52.17 50.00 9.52 38.46 53.33 60.00 50.00 48.00 38.46 77.78 66.67 13.33 58.33 43.75 53.33 34.78 30.43 K intron_retention Rbcn-3A chrX - chrX_6136175_6136247 chrX_6136174_6136175;chrX_6136247_6136248 chrX_6136100_6136174;chrX_6136248_6136317 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Spn,I_chr3L_2511764_2512148 chr3L - chr3L_2510558_2511162 chr3L_2510576_2511162 chr3L_2511163_2511763;chr3L_2509762_2510557 100.00 100.00 NA 96.43 NA NA NA 96.00 98.11 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 97.37 100.00 100.00 NA 100.00 NA 95.24 NA NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 97.67 NA 100.00 NA 100.00 100.00 90.48 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA NA K alternative_donor CG8788,I_chr2R_5026774_5026825,RI_chr2R_5026774_5026866,RI_chr2R_5026774_5028942,RI_chr2R_5033951_5034150,I_chr2R_5036518_5036570 chr2R + chr2R_5026774_5027484 chr2R_5026778_5027484 chr2R_5027485_5027803;chr2R_5026674_5026773 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA K intron_retention CG13373,CG32817 chrX + chrX_371325_371639 chrX_371324_371325;chrX_371639_371640 chrX_371035_371324;chrX_371640_371964 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA 4.55 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 25.00 0.00 NA K alternative_acceptor Hr78,I_chr3L_21490089_21490390,CG33214 chr3L - chr3L_21490008_21490390;chr3L_21489978_21490390;chr3L_21490023_21490390 chr3L_21490089_21490390 chr3L_21490391_21490490;chr3L_21489920_21489977 0.00 NA NA 15.00 NA 0.00 0.00 0.00 0.00 NA 0.00 7.69 9.09 9.09 0.00 0.00 NA 0.00 10.00 0.00 NA NA 10.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 8.33 NA NA NA NA NA 0.00 NA 0.00 10.00 16.67 NA NA NA NA 0.00 NA 0.00 0.00 NA NA 7.69 NA NA NA K cassette Msp-300,I_chr2L_5185965_5188116,I_chr2L_5197634_5197866 chr2L + chr2L_5155850_5188116;chr2L_5185965_5188116 chr2L_5185965_5187606,chr2L_5155850_5187606;chr2L_5187718_5188116 chr2L_5187607_5187717 chr2L_5155589_5155849;chr2L_5188117_5188216 100.00 100.00 100.00 97.96 95.45 100.00 96.43 98.31 98.92 95.83 100.00 98.33 100.00 100.00 96.97 100.00 96.88 100.00 100.00 100.00 100.00 91.30 100.00 93.75 100.00 88.89 100.00 100.00 100.00 100.00 96.77 NA 100.00 98.18 100.00 94.44 97.50 100.00 95.00 95.45 NA 98.21 100.00 95.24 NA NA 100.00 100.00 96.55 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 K intron_retention par-1,I_chr2R_15359242_15360944,I_chr2R_15359251_15359544,I_chr2R_15359251_15360944,I_chr2R_15359658_15359771,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15359242_15360323 chr2R_15359241_15359242;chr2R_15360323_15360324 chr2R_15359151_15359241;chr2R_15360324_15360436 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21308996_21309579;chr2L_21309019_21309579;chr2L_21309084_21309579 chr2L_21309092_21309579 chr2L_21309580_21309679;chr2L_21308992_21308995 64.59 NA NA 75.00 NA NA 42.86 62.50 62.50 NA NA NA NA NA NA 53.85 33.33 NA NA NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA 71.43 NA NA NA 75.00 NA 72.73 80.00 NA NA NA NA NA NA NA NA NA K intron_retention CG34123,RI_chr2R_11160894_11162043,I_chr2R_11167854_11168411 chr2R - chr2R_11165283_11165391 chr2R_11165282_11165283;chr2R_11165391_11165392 chr2R_11165181_11165282;chr2R_11165392_11165548 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 3.70 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 13.79 0.00 0.00 NA 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K jcn_only_AA ssp4,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13411752_13411852 chr2R_13411788_13411852 chr2R_13411853_13412089;chr2R_13411589_13411751 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor mthl5 chr3R - chr3R_7710606_7710663 chr3R_7710609_7710663 chr3R_7710664_7710845;chr3R_7710105_7710605 9.52 NA 7.14 11.76 NA 12.50 4.55 5.26 15.15 NA NA 18.75 NA 7.69 14.29 14.29 0.00 NA 0.00 2.94 NA 0.00 10.34 5.26 NA 7.69 12.50 NA NA 6.25 NA NA NA 6.67 21.43 6.25 5.56 17.65 4.76 13.33 NA 13.04 21.43 9.52 NA 10.71 17.65 NA 13.79 7.14 6.90 4.76 NA 10.53 9.52 12.50 5.26 NA K jcn_only_AA Ance,Ance-2 chr2L + chr2L_13905719_13906565 chr2L_13905719_13906460 chr2L_13905672_13905718;chr2L_13906566_13907172 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA K jcn_only_AD Pak,RI_chr3R_2181143_2181934 chr3R + chr3R_2179971_2180635 chr3R_2179973_2180635 chr3R_2180636_2180902;chr3R_2179902_2179970 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA K intron_retention CG11095 chrX + chrX_13706079_13706144 chrX_13706078_13706079;chrX_13706144_13706145 chrX_13705693_13706078;chrX_13706145_13707067 14.29 NA 7.14 NA NA NA NA 21.05 17.65 NA NA 14.29 NA NA 22.22 NA NA NA NA 7.41 7.69 25.00 NA 11.11 NA NA 15.79 NA 5.56 NA 33.33 10.53 14.29 17.39 NA NA 4.17 0.00 13.64 13.89 11.76 9.68 16.67 NA 7.41 27.27 NA 23.33 10.71 26.32 25.00 NA NA 20.00 NA 26.32 NA 14.29 K intron_retention CG11880,I_chr3R_24949827_24951052,CE_chr3R_24962426_24962797 chr3R + chr3R_24949202_24949522 chr3R_24949201_24949202;chr3R_24949522_24949523 chr3R_24949179_24949201;chr3R_24949523_24949826 0.00 0.00 0.00 8.82 3.23 0.00 2.27 2.44 0.00 0.00 0.00 2.22 0.00 0.00 0.00 2.63 0.00 0.00 5.00 6.38 0.00 3.85 0.00 0.00 0.00 4.08 4.55 0.00 6.67 NA 0.00 0.00 0.00 2.70 0.00 9.09 0.00 NA 4.17 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 NA 0.00 0.00 NA 0.00 K alternative_acceptor coro,I_chr2R_2754447_2755071 chr2R - chr2R_2751039_2751782 chr2R_2751060_2751782 chr2R_2751783_2752076;chr2R_2750853_2751038 1.64 2.92 2.26 1.54 1.98 1.64 2.34 1.33 1.83 0.00 1.18 0.97 1.15 0.00 2.17 0.84 1.41 1.02 0.93 2.67 1.00 14.67 1.65 2.26 1.65 0.00 2.59 0.00 0.93 1.89 1.45 1.19 2.13 1.14 1.57 2.42 1.94 2.23 1.79 1.06 2.20 2.26 1.27 1.64 0.72 1.85 1.96 1.52 1.69 2.45 2.33 1.01 0.00 2.03 1.35 2.72 1.61 0.00 K cassette CG3632,RI_chrX_16195880_16196242 chrX + chrX_16195951_16196939 chrX_16195951_16196242;chrX_16196446_16196939 chrX_16196243_16196445 chrX_16195846_16195950;chrX_16196940_16197282 91.11 88.24 97.30 79.07 91.67 96.77 91.11 83.58 92.31 80.00 95.24 92.00 87.88 86.11 91.67 93.88 100.00 93.55 97.30 87.01 95.45 88.24 90.91 90.70 72.00 82.05 91.67 84.00 96.55 92.00 97.56 88.89 96.15 91.53 85.00 74.07 89.19 87.50 87.50 92.86 83.33 87.34 88.24 97.30 97.44 95.65 97.50 88.24 89.86 87.76 93.48 85.19 89.29 86.21 91.49 92.86 95.65 95.35 K alternative_donor sxc,I_chr2R_1203985_1205289,I_chr2R_1208121_1213310,I_chr2R_1213177_1213308 chr2R + chr2R_1194785_1194918 chr2R_1194858_1194918 chr2R_1194919_1195157;chr2R_1194775_1194784 69.23 NA NA 87.50 NA NA 84.21 85.71 57.14 NA NA NA 69.23 NA NA 45.45 NA NA 62.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 55.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 70.00 NA NA NA NA NA NA NA NA NA K intron_retention sty chr3L - chr3L_3404922_3416803 chr3L_3404921_3404922;chr3L_3416803_3416804 chr3L_3401145_3404921;chr3L_3416804_3417995 0.00 0.29 0.00 0.60 0.00 0.66 0.00 0.70 0.38 0.00 0.00 0.31 0.91 0.65 0.22 0.69 0.00 0.00 0.44 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.55 0.50 0.33 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 K intron_retention mav,RI_chr4_645290_646129 chr4 - chr4_645290_645397 chr4_645289_645290;chr4_645397_645398 chr4_645190_645289;chr4_645398_645533 1.25 NA 0.00 6.67 NA NA 12.50 0.00 6.12 NA NA 3.57 0.00 0.00 NA 6.67 NA NA 3.23 2.56 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 9.76 0.00 6.67 NA NA NA 5.88 NA 2.50 0.00 NA NA 0.00 NA 0.00 4.44 NA 0.00 NA NA NA 0.00 NA NA 0.00 K intron_retention CG7530,I_chr3R_10556352_10557136,eff chr3R - chr3R_10556352_10557148 chr3R_10556351_10556352;chr3R_10557148_10557149 chr3R_10556252_10556351;chr3R_10557149_10557231 95.90 100.00 100.00 86.96 95.24 92.31 100.00 97.14 100.00 100.00 100.00 95.24 95.00 94.44 89.66 96.67 100.00 96.88 90.48 93.22 94.74 NA 92.86 100.00 92.86 100.00 95.00 100.00 90.91 100.00 95.65 94.44 89.66 96.55 100.00 100.00 93.75 85.71 91.67 96.61 100.00 97.44 93.75 85.71 100.00 97.37 92.31 98.04 91.49 100.00 100.00 100.00 91.18 90.00 96.15 81.82 100.00 94.92 K intron_retention La chr2L - chr2L_20348879_20348949 chr2L_20348878_20348879;chr2L_20348949_20348950 chr2L_20348704_20348878;chr2L_20348950_20349929 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention bor chr3R - chr3R_12089344_12089451 chr3R_12089343_12089344;chr3R_12089451_12089452 chr3R_12088869_12089343;chr3R_12089452_12089738 0.00 0.00 1.37 0.00 0.00 0.00 0.00 2.99 0.00 0.00 0.00 1.44 0.00 0.00 0.00 0.00 0.00 2.99 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.55 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.48 0.00 1.11 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N multi_cassette msn,I_chr3L_2558033_2560115,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2558390_2563817 chr3L_2558390_2560115;chr3L_2560296_2561931;chr3L_2562844_2563817 chr3L_2560116_2560295;chr3L_2561932_2562843 chr3L_2558293_2558389;chr3L_2563818_2563917 100.00 75.00 100.00 70.27 60.00 100.00 79.31 100.00 73.77 100.00 100.00 89.71 23.08 100.00 70.83 100.00 100.00 46.67 100.00 100.00 100.00 37.62 81.40 86.15 100.00 100.00 82.69 61.90 89.47 85.25 100.00 100.00 100.00 100.00 81.63 100.00 82.02 100.00 81.82 92.31 82.61 100.00 100.00 83.72 77.36 100.00 100.00 90.62 100.00 100.00 85.48 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG4169,CG32163 chr3L + chr3L_16578183_16578284 chr3L_16578182_16578183;chr3L_16578284_16578285 chr3L_16577879_16578182;chr3L_16578285_16579256 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA iPLA2-VIA chr3L - chr3L_9856717_9857292;chr3L_9857015_9857292 chr3L_9857200_9857292 chr3L_9857293_9857459 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD su(s) chrX + chrX_535224_535329 chrX_535236_535329 chrX_535330_537684;chrX_535111_535223 100.00 100.00 100.00 97.78 100.00 100.00 95.00 100.00 98.84 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.61 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 94.29 100.00 93.10 100.00 100.00 97.92 100.00 95.45 100.00 100.00 96.83 100.00 100.00 97.56 100.00 98.33 100.00 96.97 100.00 100.00 100.00 100.00 95.45 88.89 100.00 NA 98.08 100.00 100.00 97.06 K intron_retention I_chr2R_13460029_13460240,Dcr-2,I_chr2R_13466001_13466061,I_chr2R_13466001_13466072 chr2R - chr2R_13466001_13466072 chr2R_13466000_13466001;chr2R_13466072_13466073 chr2R_13465901_13466000;chr2R_13466073_13466161 77.12 NA 93.75 75.00 NA NA 70.59 91.67 94.44 NA NA 90.91 NA NA 100.00 76.47 75.00 87.50 90.91 83.33 NA NA NA 66.67 NA 75.00 66.67 77.78 NA NA 76.19 NA NA 100.00 NA NA NA NA NA 60.00 NA 66.67 NA NA NA NA NA NA 92.31 NA NA NA NA NA 75.00 NA NA NA K intron_retention Rbf chrX - chrX_694099_694160 chrX_694098_694099;chrX_694160_694161 chrX_693744_694098;chrX_694161_694349 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 12.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention ird5,I_chr3R_11874883_11874942,CG10185 chr3R - chr3R_11874534_11874942 chr3R_11874533_11874534;chr3R_11874942_11874943 chr3R_11873964_11874533;chr3R_11874943_11875042 3.92 0.00 0.00 17.14 0.00 0.00 10.53 0.00 4.35 0.00 0.00 2.33 7.69 0.00 0.00 6.06 0.00 0.00 4.76 3.92 3.57 29.03 3.92 3.03 15.38 6.25 6.90 7.69 8.33 9.52 0.00 10.53 3.45 1.92 8.33 8.70 7.14 0.00 3.12 3.92 4.76 5.80 0.00 6.25 0.00 6.67 0.00 8.33 3.33 9.52 4.55 7.14 0.00 0.00 6.06 6.67 0.00 9.09 K jcn_only_AD CREF_chr3R_5589662_5589762,CG8481 chr3R + chr3R_5594185_5594466;chr3R_5593863_5594466 chr3R_5594297_5594466 chr3R_5594467_5594493;chr3R_5593583_5593862 44.16 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 63.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG11771 chr3R + chr3R_20757959_20758015 chr3R_20757963_20758015 chr3R_20758016_20760641;chr3R_20757811_20757958 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.56 NA 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 K intron_retention Nopp140,I_chr3L_21828330_21828566,I_chr3L_21828986_21829082 chr3L + chr3L_21827930_21828170 chr3L_21827929_21827930;chr3L_21828170_21828171 chr3L_21827465_21827929;chr3L_21828171_21828185 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 5.36 0.00 3.85 0.00 0.00 0.00 0.00 0.00 2.41 0.00 NA 3.92 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 4.65 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 1.54 2.44 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9795,EI_chr3R_145575_147566,RI_chr3R_145613_145675 chr3R + chr3R_145613_147566 chr3R_145612_145613;chr3R_147566_147567 chr3R_145513_145612;chr3R_147567_147666 52.56 55.10 52.38 46.81 69.57 48.84 63.49 47.06 53.19 36.84 81.82 52.56 60.47 58.82 54.55 46.81 55.00 79.63 52.27 63.41 80.39 50.00 43.08 47.54 48.48 60.00 52.17 67.86 71.88 55.56 56.00 57.50 39.13 51.47 59.46 55.56 44.74 42.50 50.68 44.44 76.47 47.47 51.28 34.38 69.44 61.54 59.62 41.67 40.23 39.29 37.88 50.00 39.62 71.43 49.06 61.36 70.42 58.33 K intron_retention CG8547 chr2R - chr2R_10149426_10149484 chr2R_10149425_10149426;chr2R_10149484_10149485 chr2R_10148716_10149425;chr2R_10149485_10149676 0.00 0.00 NA NA NA NA NA NA 4.17 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA 15.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 NA 0.00 0.00 0.00 0.00 6.67 0.00 0.00 4.76 NA 0.00 0.00 NA 0.00 0.00 NA N cassette Dscam,F_chr2R_3219886_3228832,F_chr2R_3226043_3235353,F_chr2R_3227948_3235353,F_chr2R_3228738_3235353,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3219886_3235353 chr2R_3219886_3233380;chr2R_3233672_3235353 chr2R_3233381_3233671 chr2R_3219786_3219885;chr2R_3235354_3235453 100.00 36.36 41.67 30.00 NA 100.00 55.56 45.83 100.00 100.00 NA 100.00 37.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 18.92 100.00 100.00 100.00 100.00 100.00 100.00 30.77 100.00 100.00 NA 36.00 100.00 100.00 100.00 100.00 NA 100.00 42.86 NA 100.00 100.00 100.00 NA NA NA 100.00 57.89 NA 29.41 100.00 NA NA 55.56 NA NA NA K mutually_exclusive CG31243,CG42457 chr3R + chr3R_13836297_13837817,chr3R_13837873_13838869 chr3R_13836297_13836818,chr3R_13837436_13838869 chr3R_13837818_13837872 chr3R_13836819_13837435 chr3R_13836063_13836296;chr3R_13838870_13839405 16.67 28.57 16.67 NA NA NA 16.67 14.29 26.32 NA NA 23.08 NA NA 12.50 11.11 20.00 0.00 14.29 5.88 NA 12.50 10.00 16.67 NA 20.00 22.22 NA 33.33 16.67 12.50 NA 33.33 12.50 14.29 28.57 15.38 20.00 21.43 14.29 16.67 20.00 20.00 28.57 40.00 25.00 20.00 40.00 12.50 16.67 14.29 25.00 16.67 NA 10.00 NA NA 11.11 K intron_retention JhI-21,I_chr2L_12055360_12055714 chr2L - chr2L_12052504_12052559 chr2L_12052503_12052504;chr2L_12052559_12052560 chr2L_12051752_12052503;chr2L_12052560_12052684 0.25 0.74 0.48 1.02 0.31 0.87 0.00 0.00 0.81 0.00 0.30 0.59 0.00 0.00 0.00 1.32 0.70 0.58 0.00 0.77 0.52 0.50 0.00 0.54 0.00 0.00 0.92 2.66 0.00 0.00 0.00 0.00 0.34 0.38 0.00 0.00 0.30 0.00 0.67 1.10 0.00 0.62 0.38 0.25 0.34 0.00 0.00 0.00 1.07 0.45 0.00 0.00 0.00 0.22 0.52 0.25 0.00 0.00 K jcn_only_AA Atox1,R_chr3L_21634285_21634386,RI_chr3L_21634463_21635078 chr3L + chr3L_21634463_21635078 chr3L_21634463_21635073 chr3L_21634387_21634462;chr3L_21635079_21635178 100.00 100.00 98.31 100.00 100.00 100.00 97.83 97.92 98.82 98.33 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 98.59 98.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.73 100.00 98.36 97.87 100.00 98.55 95.92 98.78 100.00 97.22 100.00 100.00 100.00 98.75 99.04 98.67 98.75 98.85 100.00 100.00 100.00 100.00 100.00 100.00 96.43 98.45 99.59 K alternative_donor Gpo-1,I_chr2R_11747621_11747699,EI_chr2R_11747445_11747699,I_chr2R_11749758_11750187,I_chr2R_11756325_11756380 chr2R - chr2R_11748259_11750201 chr2R_11748259_11750187 chr2R_11748106_11748258;chr2R_11750202_11750219 100.00 100.00 100.00 100.00 NA 100.00 100.00 92.86 94.74 100.00 100.00 100.00 90.00 100.00 88.89 94.44 100.00 NA 100.00 100.00 100.00 95.45 100.00 96.00 100.00 90.00 96.15 94.12 93.75 100.00 93.33 94.44 100.00 93.33 100.00 95.00 100.00 100.00 100.00 97.67 95.00 94.12 NA 100.00 96.43 100.00 100.00 96.15 95.65 100.00 97.87 100.00 88.89 100.00 100.00 100.00 NA 100.00 K intron_retention jim,I_chr3L_22791582_22791898 chr3L - chr3L_22792549_22793124 chr3L_22792548_22792549;chr3L_22793124_22793125 chr3L_22792351_22792548;chr3L_22793125_22793884 76.47 63.64 76.92 59.38 86.67 83.33 83.33 73.33 72.00 NA 70.00 71.43 90.00 63.64 76.47 NA 70.00 57.14 80.00 69.57 77.78 76.47 65.71 86.21 69.23 76.92 71.43 90.00 69.23 58.33 76.92 NA NA 61.11 84.62 80.00 71.43 73.08 80.77 79.17 NA 81.82 NA 92.31 NA 63.64 88.89 76.92 85.00 71.43 72.22 71.43 NA 63.64 77.78 83.33 90.00 80.00 K intron_retention l(3)mbt,noncoding_19527,I_chr3R_23096096_23096561 chr3R - chr3R_23095096_23095153 chr3R_23095095_23095096;chr3R_23095153_23095154 chr3R_23094927_23095095;chr3R_23095154_23095427 98.18 100.00 100.00 98.11 100.00 100.00 97.92 94.55 98.46 95.45 100.00 98.18 95.65 100.00 100.00 98.39 100.00 93.75 97.73 98.33 96.67 100.00 97.06 97.56 100.00 100.00 93.55 100.00 97.62 100.00 97.44 96.97 100.00 100.00 96.97 100.00 97.62 91.30 97.30 93.94 97.96 100.00 100.00 100.00 100.00 98.15 96.67 96.77 98.51 96.15 95.56 96.00 100.00 95.24 100.00 96.97 100.00 98.78 K cassette plexA,RI_chr4_1036247_1047588,RI_chr4_1040642_1047395,RI_chr4_1044307_1046841,RF_chr4_1044307_1047399 chr4 - chr4_1040642_1046841;chr4_1036247_1047588;chr4_1040642_1047395;chr4_1040642_1047588;chr4_1040642_1047399 chr4_1040642_1042867,chr4_1036247_1042867;chr4_1044307_1046841,chr4_1044307_1047395,chr4_1044307_1047588,chr4_1044307_1047399 chr4_1042868_1044306 chr4_1036147_1036246;chr4_1047589_1047625 100.00 100.00 100.00 100.00 100.00 100.00 99.41 99.42 99.49 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.31 100.00 100.00 100.00 100.00 98.57 97.44 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.48 91.67 100.00 100.00 98.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG33129,I_chr2L_10966410_10967142,noncoding_2515,I_chr2L_10966622_10967108 chr2L - chr2L_10966622_10968104;chr2L_10966622_10968133;chr2L_10966622_10967855 chr2L_10966622_10968083 chr2L_10966522_10966621;chr2L_10968134_10968152 0.00 0.00 2.27 1.16 0.00 0.00 2.50 1.25 0.76 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 1.16 NA 0.00 0.00 NA NA 0.00 0.00 0.93 0.00 NA 0.00 0.00 NA 0.00 0.86 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 K alternative_donor CG32795,I_chrX_2677459_2682526,I_chrX_2677729_2677799,I_chrX_2679163_2681784 chrX - chrX_2683412_2683778 chrX_2683412_2683741 chrX_2683271_2683411;chrX_2683779_2683818 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K alternative_donor lig,CI_chr2R_3962006_3962916,I_chr2R_3962357_3962977,RI_chr2R_3962875_3962977 chr2R + chr2R_3961577_3962977;chr2R_3962006_3962977 chr2R_3961910_3962977 chr2R_3962978_3963016;chr2R_3961479_3961576 2.51 4.23 1.76 3.75 5.17 3.26 1.69 1.55 3.74 5.10 2.48 4.84 3.21 3.57 3.36 0.53 1.05 1.03 1.04 0.52 4.19 2.47 2.76 3.74 3.61 1.90 5.70 22.92 9.46 3.62 1.02 3.86 1.00 2.36 1.01 4.60 2.58 3.12 1.95 3.57 3.17 1.64 1.20 1.90 3.63 1.77 1.07 2.91 1.88 0.95 2.13 1.43 2.85 1.58 2.51 2.99 2.28 2.05 K intron_retention crq,I_chr2L_452169_452576,I_chr2L_452737_452797 chr2L - chr2L_450879_452576 chr2L_450878_450879;chr2L_452576_452577 chr2L_450666_450878;chr2L_452577_452676 0.00 0.00 1.32 1.80 0.00 0.00 1.79 0.00 1.82 4.55 0.00 0.00 6.06 0.00 0.00 2.35 0.00 0.00 0.00 0.70 0.00 1.61 2.27 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 1.43 0.00 2.70 6.25 0.00 0.00 2.78 0.00 1.63 0.00 0.00 0.00 0.00 0.00 0.00 1.99 0.00 0.00 2.70 NA 2.86 0.00 4.17 0.00 4.26 K jcn_only_AD CG6006 chr3R + chr3R_11984096_11984579;chr3R_11983962_11984579;chr3R_11984036_11984579;chr3R_11984029_11984579 chr3R_11984018_11984579 chr3R_11984580_11984637;chr3R_11983945_11983961 36.73 NA NA NA NA NA 22.73 NA 38.46 NA NA NA NA NA NA NA NA NA NA NA NA NA 30.00 NA NA NA 20.83 NA NA NA NA NA NA 40.91 NA NA NA NA NA NA NA 35.00 NA NA NA NA NA NA 58.06 NA 47.83 NA NA NA NA NA NA NA K intron_retention itp chr2R + chr2R_20428544_20442876 chr2R_20428543_20428544;chr2R_20442876_20442877 chr2R_20427495_20428543;chr2R_20442877_20443094 0.00 0.00 3.92 3.23 3.92 0.00 11.11 3.80 6.42 0.00 0.00 3.23 4.76 4.26 4.00 0.00 6.25 7.14 1.72 5.06 2.27 0.00 1.67 0.00 0.00 4.44 0.00 0.00 0.00 0.00 4.44 0.00 0.00 6.17 2.56 0.00 0.00 0.00 0.00 0.00 0.00 3.33 5.41 0.00 0.00 0.00 0.00 0.00 3.61 0.00 0.00 0.00 0.00 0.00 6.06 0.00 0.00 0.00 K alternative_donor I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545781_17545855;chr2R_17545686_17545855;chr2R_17545615_17545855 chr2R_17545799_17545855 chr2R_17545856_17545985;chr2R_17545613_17545614 0.00 10.00 0.00 3.70 0.00 0.00 0.00 0.00 4.55 16.67 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 8.33 0.00 0.00 12.50 0.00 0.00 20.00 7.69 20.00 25.00 0.00 0.00 0.00 12.50 11.11 4.35 NA NA 0.00 0.00 0.00 7.69 12.50 2.38 0.00 20.00 4.76 0.00 0.00 18.18 0.00 25.00 0.00 25.00 0.00 0.00 4.17 10.00 0.00 8.33 K intron_retention CG5013,I_chr3R_11877071_11877796 chr3R + chr3R_11875438_11875509 chr3R_11875437_11875438;chr3R_11875509_11875510 chr3R_11875435_11875437;chr3R_11875510_11875638 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 K intron_retention CG32529 chrX + chrX_19798711_19798771 chrX_19798710_19798711;chrX_19798771_19798772 chrX_19798542_19798710;chrX_19798772_19799645 1.26 0.82 1.45 4.98 0.83 1.05 2.33 1.23 1.50 1.07 1.38 1.33 0.44 0.00 1.81 1.95 1.68 1.38 1.71 1.35 2.86 2.08 1.41 0.57 3.24 3.72 3.35 4.68 16.07 1.20 1.15 0.00 3.50 1.88 0.81 3.99 1.23 1.04 0.86 1.22 4.84 1.12 3.35 0.99 1.72 0.86 0.82 3.70 0.98 1.26 0.87 1.29 0.87 0.79 1.06 0.36 0.00 0.00 K alternative_donor CG8177,E_chr3L_9756800_9772650,RI_chr3L_9757294_9758708,I_chr3L_9773534_9773635,I_chr3L_9774319_9774602 chr3L + chr3L_9756800_9764754 chr3L_9757294_9764754 chr3L_9764755_9765019;chr3L_9756700_9756799 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG2906 chr2R + chr2R_3844342_3844402 chr2R_3844346_3844402 chr2R_3844403_3845220;chr2R_3844148_3844341 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor I_chr2L_822032_822857,dock chr2L + chr2L_826508_829304;chr2L_826508_829456 chr2L_826508_829421 chr2L_826008_826507;chr2L_829457_829468 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Eph,I_chr4_636808_638946,I_chr4_639690_640473,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_636808_638973 chr4_636808_637929;chr4_637978_638973 chr4_637930_637977 chr4_636708_636807;chr4_638974_639046 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Df31,RE_chr2L_21628206_21629662,I_chr2L_21628206_21629666,I_chr2L_21628210_21628944,I_chr2L_21628210_21629216,EI_chr2L_21628210_21629715,REI_chr2L_21628210_21629884,I_chr2L_21628224_21629666,I_chr2L_21628734_21629666 chr2L - chr2L_21628210_21629666 chr2L_21628734_21629666 chr2L_21629667_21629762;chr2L_21628124_21628209 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.08 0.00 0.00 0.29 0.00 0.00 0.05 0.00 0.16 0.00 0.10 0.00 0.00 0.00 0.06 0.00 0.08 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.09 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 K intron_retention CG14995,I_chr3L_4095875_4097205,I_chr3L_4096047_4096903 chr3L - chr3L_4096979_4097506 chr3L_4096978_4096979;chr3L_4097506_4097507 chr3L_4096971_4096978;chr3L_4097507_4097804 16.52 NA NA NA NA NA NA NA 35.71 NA NA NA NA NA NA NA NA NA NA 15.38 NA 42.86 0.00 11.11 NA NA NA NA 0.00 NA NA NA 9.09 NA NA NA 6.45 13.04 22.22 20.00 NA 22.22 NA 17.65 7.69 NA NA 7.14 25.00 38.46 25.00 NA NA NA NA NA NA NA K alternative_last_exon MRP,I_chr2L_12727117_12729243,F_chr2L_12727117_12736035 chr2L + chr2L_12728242_12737958 chr2L_12728242_12729930 chr2L_12737959_12738176 chr2L_12729931_12730151 chr2L_12728173_12728241 0.98 0.81 0.91 1.18 2.00 1.82 0.41 1.34 0.78 1.59 7.50 1.37 0.90 1.05 0.98 0.55 1.28 0.78 0.76 1.63 2.08 0.83 1.85 1.61 0.83 1.22 0.58 1.39 1.79 1.00 0.81 1.22 0.92 0.62 0.86 1.60 0.87 2.38 0.51 1.52 0.94 0.56 1.52 0.44 1.08 0.79 0.97 1.19 1.97 1.11 0.50 0.98 0.78 2.19 1.69 0.86 0.40 0.67 K jcn_only_AA Zyx102EF,I_chr4_1078380_1078835,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1078666_1078835;chr4_1078644_1078835;chr4_1078778_1078835 chr4_1078782_1078835 chr4_1078836_1078848;chr4_1078433_1078643 34.48 NA NA 16.67 NA NA 45.00 15.79 36.00 NA NA 33.33 NA NA NA 22.73 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 40.91 NA NA 34.48 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 37.14 NA NA NA NA NA NA NA NA NA K intron_retention Nmda1,R_chr2R_8766216_8766562,I_chr2R_8766652_8766956,I_chr2R_8766728_8766791,I_chr2R_8766728_8767623 chr2R - chr2R_8766652_8766952 chr2R_8766651_8766652;chr2R_8766952_8766953 chr2R_8766628_8766651;chr2R_8766953_8767161 60.00 NA 53.85 NA NA NA 69.23 53.33 53.33 NA NA 47.06 60.00 77.78 63.64 61.11 NA 55.56 NA 40.00 NA NA 50.00 NA NA NA 90.00 94.12 92.86 NA 54.55 NA NA 56.25 NA NA NA NA NA NA NA 33.33 NA 70.00 NA NA NA NA 68.75 NA NA NA NA NA 70.00 NA NA NA K cassette Dyb,I_chr2R_8337305_8339173,I_chr2R_8337742_8339173,I_chr2R_8338101_8339173,I_chr2R_8348603_8351844 chr2R + chr2R_8337288_8339479 chr2R_8337288_8337573;chr2R_8337742_8339479 chr2R_8337574_8337741 chr2R_8337205_8337287;chr2R_8339480_8339530 0.00 4.76 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 3.45 NA NA NA 0.00 NA NA NA 6.90 NA NA 0.00 0.00 0.00 NA 4.55 NA NA 0.00 NA NA NA 0.00 0.00 0.00 4.00 4.35 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA K intron_retention rtGEF,I_chr2L_20359856_20360012 chr2L + chr2L_20360813_20364296 chr2L_20360812_20360813;chr2L_20364296_20364297 chr2L_20360564_20360812;chr2L_20364297_20365220 6.60 8.54 1.72 33.33 6.98 7.27 22.03 10.53 4.59 7.25 14.58 10.84 11.76 9.52 9.38 9.76 4.76 4.05 4.35 7.63 8.33 2.55 5.31 3.51 6.00 7.55 6.02 9.86 7.14 4.90 4.17 5.41 7.22 5.41 5.88 3.09 4.43 6.17 3.15 5.11 15.18 7.87 8.33 5.13 3.93 7.58 7.41 5.56 6.60 10.34 7.92 5.66 5.33 2.60 5.36 9.30 7.45 6.00 K intron_retention Pfk,I_chr2R_5999081_6000140,E_chr2R_6001157_6001630 chr2R + chr2R_6001157_6002421 chr2R_6001156_6001157;chr2R_6002421_6002422 chr2R_6001129_6001156;chr2R_6002422_6002610 8.11 8.51 14.81 0.00 NA 5.26 18.92 15.00 11.11 6.98 11.11 11.11 NA NA NA NA NA 3.45 NA 0.00 10.53 5.06 8.47 9.23 6.25 NA 9.23 12.50 10.94 10.00 0.00 0.00 9.38 18.18 0.00 8.11 8.99 5.00 2.60 16.28 0.00 9.09 NA 5.26 0.00 2.38 0.00 14.29 4.00 8.70 10.42 19.35 0.00 8.11 NA 2.70 0.00 0.00 K multi_cassette unk,I_chr3R_18980963_18981530 chr3R - chr3R_18980497_18981530 chr3R_18980497_18980566;chr3R_18980690_18980853;chr3R_18980963_18981161;chr3R_18981272_18981530 chr3R_18980567_18980689;chr3R_18980854_18980962;chr3R_18981162_18981271 chr3R_18979916_18980496;chr3R_18981531_18981630 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 66.67 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 NA NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2389272_2395659 chrX_2389272_2390808;chrX_2390959_2391350;chrX_2391522_2393243;chrX_2393712_2395659 chrX_2390809_2390958;chrX_2391351_2391521;chrX_2393244_2393711 chrX_2389172_2389271;chrX_2395660_2395759 50.00 NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CtBP chr3R + chr3R_8847365_8850521 chr3R_8847364_8847365;chr3R_8850521_8850522 chr3R_8847142_8847364;chr3R_8850522_8850528 88.46 82.35 80.00 88.89 92.31 93.33 93.75 84.00 89.47 81.82 100.00 79.41 88.89 93.33 100.00 94.44 100.00 85.71 93.33 80.77 92.31 84.31 88.89 66.67 83.33 94.44 88.24 94.74 78.26 93.33 83.33 91.67 84.62 94.74 90.91 93.33 78.26 84.21 81.82 88.46 86.67 83.33 92.31 80.95 70.00 82.61 88.89 95.65 96.77 79.17 91.67 92.86 80.00 70.00 100.00 73.33 80.00 81.25 K intron_retention Rbcn-3A chrX - chrX_6137848_6137905 chrX_6137847_6137848;chrX_6137905_6137906 chrX_6137623_6137847;chrX_6137906_6138157 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Ssadh,RI_chr3R_21451890_21451963,I_chr3R_21452371_21452464,I_chr3R_21452407_21452453 chr3R - chr3R_21452368_21452453;chr3R_21452386_21452453 chr3R_21452371_21452453 chr3R_21452454_21452553;chr3R_21452307_21452367 15.00 0.00 31.25 20.00 NA NA 17.65 16.67 17.39 NA 8.33 18.18 8.33 7.14 9.09 23.53 NA 15.38 NA 16.00 NA 13.04 15.00 11.76 NA NA 14.29 10.00 NA 15.00 15.38 18.18 NA 12.50 8.33 21.05 17.39 20.00 10.53 21.05 NA 21.05 NA 23.08 25.00 9.52 10.00 7.69 10.00 23.08 15.38 NA 6.67 11.76 11.76 NA 16.00 12.50 K alternative_acceptor CG10960,I_chr3L_12819402_12819475,I_chr3L_12820683_12835879 chr3L - chr3L_12819402_12819475 chr3L_12819406_12819475 chr3L_12819476_12819536;chr3L_12819337_12819401 100.00 100.00 99.28 99.55 100.00 100.00 98.80 99.65 99.69 98.11 100.00 100.00 98.82 100.00 99.32 99.30 100.00 99.25 100.00 100.00 99.13 100.00 100.00 97.98 100.00 100.00 100.00 100.00 100.00 100.00 99.30 100.00 100.00 100.00 100.00 100.00 98.97 100.00 100.00 99.02 100.00 99.63 100.00 100.00 100.00 99.09 100.00 100.00 100.00 100.00 99.22 98.46 100.00 98.46 99.40 100.00 100.00 100.00 K multi_cassette CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1525393_1527189 chr3L_1525393_1526333;chr3L_1526399_1526659;chr3L_1526732_1527189 chr3L_1526334_1526398;chr3L_1526660_1526731 chr3L_1525293_1525392;chr3L_1527190_1527240 20.00 NA NA NA NA NA NA NA NA NA NA 95.00 NA NA NA NA NA NA NA 44.44 NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA 25.00 NA NA 15.38 NA 12.50 NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA K alternative_donor CG3714,I_chr2L_4190825_4191774,I_chr2L_4192969_4193324,I_chr2L_4195905_4196470,I_chr2L_4196780_4197306,RI_chr2L_4196780_4197951,I_chr2L_4196815_4197306,I_chr2L_4196815_4197951 chr2L - chr2L_4196780_4197146 chr2L_4196780_4197095 chr2L_4196715_4196779;chr2L_4197147_4197191 0.00 0.00 0.00 8.11 0.00 0.00 4.42 4.55 4.84 0.00 0.00 1.89 17.39 5.00 0.00 3.92 0.00 0.00 0.00 2.50 0.00 0.00 6.52 2.94 5.41 0.00 3.39 6.38 0.00 4.35 1.72 NA 0.00 5.00 3.70 5.26 3.45 0.00 0.00 4.76 0.00 3.28 0.00 1.49 NA 0.00 NA 0.00 0.00 2.27 0.00 0.00 NA NA 3.85 0.00 0.00 NA K intron_retention CG8736,noncoding_5214 chr2R - chr2R_4482147_4482353 chr2R_4482146_4482147;chr2R_4482353_4482354 chr2R_4481544_4482146;chr2R_4482354_4483748 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA 12.50 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 0.00 4.00 5.56 NA 30.77 0.00 14.29 NA NA NA NA 0.00 6.90 0.00 K intron_retention CG7766,I_chrX_8993495_8994545,I_chrX_8991338_8991387 chrX - chrX_8993495_8995128 chrX_8993494_8993495;chrX_8995128_8995129 chrX_8993395_8993494;chrX_8995129_8995452 5.81 3.45 8.00 8.22 9.68 9.52 15.38 11.43 10.81 5.26 4.76 17.28 0.00 11.54 5.36 5.80 17.07 8.89 13.79 10.75 10.34 3.81 7.81 5.36 4.88 10.20 7.58 10.00 9.09 5.81 4.29 5.41 4.23 5.68 8.47 4.76 4.62 2.63 7.27 5.31 2.27 11.58 10.87 6.58 1.47 2.13 5.13 3.92 10.26 5.26 7.81 6.52 3.45 0.00 9.33 1.89 5.13 2.97 K intron_retention RI_chr2R_11577574_11577625,CG33460,CG33461,CG33462 chr2R + chr2R_11582134_11582205 chr2R_11582133_11582134;chr2R_11582205_11582206 chr2R_11581982_11582133;chr2R_11582206_11582778 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG8405,I_chr2R_11936911_11936991 chr2R + chr2R_11936911_11936991 chr2R_11936915_11936991 chr2R_11936992_11937091;chr2R_11936848_11936910 96.97 94.74 100.00 95.12 94.74 94.74 96.43 100.00 97.56 94.44 95.65 100.00 100.00 100.00 95.65 100.00 100.00 95.45 100.00 98.44 100.00 97.14 96.97 95.65 95.00 93.75 100.00 94.44 95.83 100.00 83.33 100.00 100.00 100.00 92.31 100.00 97.78 95.24 100.00 95.45 94.12 97.78 94.12 100.00 100.00 100.00 94.12 95.24 97.50 94.74 96.55 100.00 90.48 100.00 93.33 94.74 94.74 100.00 K intron_retention CG14322 chr3R + chr3R_13494835_13494904 chr3R_13494834_13494835;chr3R_13494904_13494905 chr3R_13494833_13494834;chr3R_13494905_13494939 100.00 NA NA 95.65 NA NA 100.00 94.44 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 87.50 100.00 NA NA NA 81.82 NA NA NA NA NA NA 100.00 100.00 NA 95.24 100.00 NA NA NA NA 100.00 NA 94.12 NA NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA 88.89 100.00 100.00 100.00 NA K intron_retention CG4133 chr2L + chr2L_455828_456085 chr2L_455827_455828;chr2L_456085_456086 chr2L_455543_455827;chr2L_456086_456223 47.06 NA NA 66.67 NA NA 47.06 44.00 31.25 NA NA 47.06 NA NA NA 54.55 NA NA 50.00 33.33 NA NA NA NA NA 53.33 50.00 NA NA NA NA NA NA 45.45 NA 56.25 NA NA NA 31.58 NA 45.45 36.36 50.00 NA 40.00 NA NA 45.45 NA NA NA NA NA 63.64 NA 60.00 NA K intron_retention Adam,I_chr2R_5857058_5857250,I_chr2R_5857078_5857245 chr2R + chr2R_5857360_5857423 chr2R_5857359_5857360;chr2R_5857423_5857424 chr2R_5857251_5857359;chr2R_5857424_5857712 0.00 0.00 0.00 0.88 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 1.88 1.46 0.00 0.00 0.00 0.51 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.31 0.00 0.00 K jcn_only_AA Sur-8 chr3R - chr3R_13225319_13227032 chr3R_13225324_13227032 chr3R_13227033_13227098;chr3R_13225253_13225318 100.00 100.00 100.00 100.00 98.60 100.00 100.00 99.49 100.00 99.15 99.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.59 99.01 99.67 99.69 99.01 100.00 100.00 99.25 98.01 99.15 100.00 99.63 98.56 99.45 99.43 100.00 100.00 100.00 99.09 100.00 99.71 98.78 99.07 100.00 99.71 100.00 100.00 100.00 99.12 100.00 100.00 100.00 99.27 98.90 100.00 100.00 99.47 100.00 100.00 K intron_retention CG5630 chr3R + chr3R_16752700_16754401 chr3R_16752699_16752700;chr3R_16754401_16754402 chr3R_16752493_16752699;chr3R_16754402_16754407 87.50 NA NA 14.29 NA NA NA 100.00 90.00 NA NA 66.67 88.89 NA NA 66.67 NA NA NA 83.33 NA 93.75 81.25 90.00 NA NA 87.50 NA NA NA 90.91 NA NA NA NA 90.00 83.33 NA 93.33 93.33 NA 75.00 NA 88.89 90.91 83.33 90.00 87.50 77.78 86.67 75.00 NA NA 72.73 NA NA 87.50 83.33 K intron_retention bbc,I_chr2R_9376554_9377246,REI_chr2R_9379401_9381986 chr2R - chr2R_9376554_9378939 chr2R_9376553_9376554;chr2R_9378939_9378940 chr2R_9376527_9376553;chr2R_9378940_9379098 95.24 94.44 100.00 100.00 96.88 92.86 94.12 96.72 94.59 93.33 96.88 89.66 97.67 97.06 95.24 96.83 100.00 90.00 95.65 95.38 96.77 95.42 94.20 84.75 93.55 96.30 95.31 90.24 91.18 96.77 86.96 92.86 94.74 96.88 95.45 71.79 96.72 87.76 91.89 93.75 88.89 98.15 96.00 81.82 80.00 94.44 84.62 100.00 97.96 96.67 97.78 97.30 92.31 93.33 97.06 88.46 95.65 88.89 K cassette RpL10Ab chr3L + chr3L_11815991_11816757 chr3L_11815991_11816299;chr3L_11816456_11816757 chr3L_11816300_11816455 chr3L_11815955_11815990;chr3L_11816758_11817314 99.96 99.97 99.79 99.14 99.91 99.96 99.97 99.82 99.93 99.95 99.86 99.88 99.96 100.00 99.91 99.91 99.95 99.82 99.96 99.84 99.91 98.56 100.00 100.00 100.00 99.74 100.00 99.92 99.94 100.00 99.87 99.97 99.95 99.90 100.00 99.96 100.00 100.00 99.98 99.88 99.93 99.88 99.86 99.98 99.92 99.98 99.97 99.98 99.90 99.97 100.00 100.00 99.98 100.00 99.91 100.00 100.00 99.98 K intron_retention Vha16,I_chr2R_2519645_2520499,RI_chr2R_2519646_2519840,I_chr2R_2519646_2520292,I_chr2R_2519646_2520298,I_chr2R_2519775_2520499 chr2R - chr2R_2519646_2519810 chr2R_2519645_2519646;chr2R_2519810_2519811 chr2R_2519546_2519645;chr2R_2519811_2519868 53.98 60.19 53.85 53.96 56.45 50.91 82.96 62.99 53.04 41.89 55.45 62.95 56.94 60.00 57.31 53.98 58.54 50.41 60.00 50.00 48.67 46.73 55.97 48.28 67.82 73.68 61.49 40.54 63.46 50.00 45.71 41.51 53.21 59.46 63.64 78.43 34.85 42.57 37.37 39.93 68.52 49.22 57.98 56.36 43.40 44.59 59.26 48.48 51.33 48.19 59.70 59.22 47.62 60.53 51.79 51.92 57.32 58.73 K intron_retention MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17399683_17401713 chr2R_17399682_17399683;chr2R_17401713_17401714 chr2R_17399598_17399682;chr2R_17401714_17401813 15.52 14.00 9.52 24.56 13.79 10.87 46.67 33.33 18.99 14.29 34.48 36.54 26.09 12.12 14.29 13.79 29.17 18.92 21.43 12.99 20.69 18.11 13.92 18.46 19.57 18.42 14.58 23.61 26.67 12.00 17.31 14.29 19.70 15.52 15.38 14.58 12.35 14.00 14.29 9.64 26.92 16.67 18.52 18.00 20.29 13.43 17.81 16.95 12.70 18.52 12.64 11.76 13.79 14.00 17.50 13.89 11.34 12.86 K intron_retention CG13779 chr2L + chr2L_7064198_7064252 chr2L_7064197_7064198;chr2L_7064252_7064253 chr2L_7064002_7064197;chr2L_7064253_7064467 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.98 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA RI_chr2R_12912984_12913058,RhoGEF2 chr2R + chr2R_12926410_12926473 chr2R_12926410_12926467 chr2R_12926100_12926409;chr2R_12926474_12926605 90.20 91.55 87.50 90.20 92.86 88.46 85.53 87.74 88.52 92.06 97.30 91.67 87.50 87.72 81.93 90.91 86.21 92.11 88.52 88.89 79.31 96.55 87.70 96.81 87.50 91.43 94.62 90.77 91.75 85.06 89.47 96.30 88.89 89.26 96.92 92.71 91.67 85.07 83.84 91.14 92.98 88.14 88.89 95.70 93.33 89.33 87.06 92.70 93.18 84.00 86.84 91.53 95.08 90.24 89.01 87.10 90.74 92.59 K alternative_donor noncoding_4199 chr2L - chr2L_21540090_21540149 chr2L_21540090_21540144 chr2L_21539548_21540089;chr2L_21540150_21540275 10.75 10.38 10.07 10.75 13.37 10.88 9.09 10.73 12.24 12.07 9.68 10.90 10.04 10.98 10.49 13.45 11.16 9.84 10.85 9.57 10.15 11.94 16.67 11.23 8.20 11.30 10.26 8.86 12.20 10.29 11.58 10.37 14.67 11.22 11.11 8.41 8.74 11.65 9.61 10.71 12.42 11.48 12.55 9.48 9.71 11.34 12.07 14.58 11.98 11.14 7.33 8.65 9.71 13.18 9.33 10.65 10.39 9.92 K mutually_exclusive Dscam,I_chr2R_3212234_3216793,I_chr2R_3212243_3212342,F_chr2R_3219886_3228832,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3212243_3214121,chr2R_3214290_3216793 chr2R_3212243_3213656,chr2R_3213870_3216793 chr2R_3214122_3214289 chr2R_3213657_3213869 chr2R_3212143_3212242;chr2R_3216794_3216856 63.64 68.85 60.98 52.24 61.76 47.92 68.97 52.17 61.29 76.74 73.91 64.94 39.13 57.58 60.87 44.12 62.50 68.75 56.76 61.54 59.38 84.03 69.00 66.67 75.41 57.58 62.86 73.02 73.91 67.50 54.90 62.50 70.00 51.67 69.09 86.57 72.58 70.49 72.27 58.06 72.50 60.64 58.06 56.10 76.92 64.62 65.67 63.41 58.75 67.27 59.49 63.64 70.45 74.00 52.94 63.93 67.31 61.36 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2389980 chrX_2387249_2387583;chrX_2387710_2388436;chrX_2388671_2389073;chrX_2389272_2389644;chrX_2389762_2389980 chrX_2387584_2387709;chrX_2388437_2388670;chrX_2389074_2389271;chrX_2389645_2389761 chrX_2387149_2387248;chrX_2389981_2390066 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA 66.67 NA NA NA 66.67 100.00 NA NA NA NA NA 100.00 NA NA NA N cassette Pvf2 chr2L - chr2L_7070947_7083185 chr2L_7070947_7074253;chr2L_7074357_7083185 chr2L_7074254_7074356 chr2L_7070421_7070946;chr2L_7083186_7083728 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.09 100.00 100.00 100.00 100.00 100.00 97.14 96.46 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention lva,CG6428 chrX - chrX_3854618_3854674 chrX_3854617_3854618;chrX_3854674_3854675 chrX_3854510_3854617;chrX_3854675_3858385 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention l(3)87Df chr3R + chr3R_8856992_8857056 chr3R_8856991_8856992;chr3R_8857056_8857057 chr3R_8856804_8856991;chr3R_8857057_8857663 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 2.44 2.27 6.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention tai,I_chr2L_9191814_9206231 chr2L + chr2L_9243179_9243234 chr2L_9243178_9243179;chr2L_9243234_9243235 chr2L_9242993_9243178;chr2L_9243235_9243545 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 2.03 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.77 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG16940,I_chr3L_212740_212843,I_chr3L_212783_212843,noncoding_9585,Kaz1-ORFA_Kaz1-ORFB chr3L + chr3L_212308_212843;chr3L_212788_212843 chr3L_212785_212843 chr3L_212844_212943;chr3L_212275_212307 100.00 NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG11739,RI_chr3R_205772_205830,I_chr3R_207254_207600 chr3R + chr3R_205768_205830 chr3R_205772_205830 chr3R_205831_205930;chr3R_205672_205767 2.63 3.08 2.38 3.42 1.65 0.00 2.52 0.43 3.72 2.33 0.00 4.21 2.86 1.03 2.08 0.70 4.10 3.45 3.74 1.85 4.08 1.67 4.46 3.57 2.33 2.56 1.94 4.88 5.88 5.00 10.42 4.55 7.79 0.60 1.39 2.56 0.61 2.06 4.44 4.39 1.67 1.99 2.08 0.00 1.19 3.03 3.77 5.08 1.40 6.19 2.63 2.67 3.97 2.52 3.90 2.31 3.66 7.27 K intron_retention CG17224,RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605 chr2L - chr2L_3017904_3017958 chr2L_3017903_3017904;chr2L_3017958_3017959 chr2L_3017812_3017903;chr2L_3017959_3018017 0.00 0.00 0.00 0.00 0.00 0.00 1.33 2.30 2.24 0.00 0.00 2.11 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 2.44 0.00 0.00 10.64 NA NA 0.00 0.68 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 1.35 0.00 1.92 0.00 K jcn_only_AA ATPsyn-Cf6,I_chr3R_19181282_19181355,I_chr3R_19181508_19181563,I_chr3R_19181524_19181702 chr3R - chr3R_19181282_19181355 chr3R_19181292_19181355 chr3R_19181356_19181424;chr3R_19181216_19181281 100.00 99.90 100.00 100.00 100.00 100.00 100.00 99.91 99.87 99.77 100.00 99.92 100.00 100.00 99.77 100.00 100.00 100.00 99.86 99.94 100.00 100.00 100.00 99.92 100.00 99.69 99.90 100.00 100.00 99.87 99.89 100.00 99.88 100.00 100.00 100.00 100.00 100.00 99.94 100.00 99.71 99.94 100.00 99.88 100.00 99.87 99.93 100.00 99.90 99.90 100.00 100.00 100.00 99.79 100.00 100.00 99.95 100.00 K alternative_donor RI_chrX_7172561_7252693,CG1677,I_chrX_7178792_7252693,unc-119,I_chrX_7183298_7183371,RI_chrX_7183298_7184274 chrX - chrX_7183298_7183538 chrX_7183298_7183371 chrX_7183198_7183297;chrX_7183539_7183711 16.00 NA 22.22 16.00 18.18 11.76 18.18 8.00 12.12 NA NA 17.86 20.00 28.57 25.00 17.39 18.18 36.36 9.52 16.67 30.77 16.67 8.00 21.05 15.38 0.00 17.39 NA 18.18 18.18 17.65 NA 18.18 12.00 14.29 11.76 13.33 0.00 5.88 21.43 NA 19.05 26.67 NA 14.29 14.29 12.00 NA 21.43 7.14 10.00 14.29 NA 5.56 11.76 5.88 15.38 NA K alternative_donor RpL17,I_chrX_6637182_6638207,RI_chrX_6637182_6637528,I_chrX_6637182_6637973,snoRNA:Psi28S-1232 chrX - chrX_6637182_6638178;chrX_6637182_6638228;chrX_6637182_6637982 chrX_6637182_6638141 chrX_6637093_6637181;chrX_6638229_6638235 37.04 42.86 45.00 37.04 46.94 43.59 57.78 41.51 47.14 6.82 55.88 49.18 64.86 46.88 40.00 42.42 50.00 54.35 38.46 42.05 44.44 11.21 38.89 34.15 35.29 55.32 18.60 11.11 27.96 9.09 31.25 5.50 4.00 37.78 15.69 11.32 43.75 42.86 35.19 9.24 6.45 42.22 41.03 12.96 13.22 9.21 29.63 4.68 33.96 16.33 43.33 42.86 6.69 29.73 38.00 27.78 16.09 4.97 K intron_retention Nlp,I_chr3R_25834987_25835399 chr3R + chr3R_25830778_25831009 chr3R_25830777_25830778;chr3R_25831009_25831010 chr3R_25830755_25830777;chr3R_25831010_25831143 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.35 0.00 0.75 0.86 1.86 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.16 0.17 0.00 0.37 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention faf,RI_chr3R_27603474_27603893,E_chr3R_27613964_27614381,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27613920_27614381 chr3R_27613919_27613920;chr3R_27614381_27614382 chr3R_27613864_27613919;chr3R_27614382_27614481 93.33 93.33 92.86 95.45 NA NA 86.21 93.33 96.15 93.75 100.00 90.00 100.00 100.00 100.00 93.33 90.91 93.75 93.75 97.73 92.31 90.48 91.30 84.21 78.57 92.31 95.65 94.74 82.14 100.00 100.00 81.25 76.47 81.82 100.00 95.83 93.75 91.67 90.48 85.71 80.95 96.15 NA 93.75 91.67 90.48 88.89 96.43 100.00 94.12 95.24 NA NA 93.75 92.86 89.47 91.67 95.00 K intron_retention CG17734,I_chr3R_7068286_7069503 chr3R - chr3R_7068736_7069503 chr3R_7068735_7068736;chr3R_7069503_7069504 chr3R_7068546_7068735;chr3R_7069504_7069603 0.81 0.85 0.00 1.05 0.00 1.26 0.75 0.43 2.13 1.72 0.00 1.71 2.20 0.00 0.00 0.00 0.98 0.00 1.18 1.56 0.76 1.92 1.34 2.05 0.00 0.00 2.21 3.06 0.81 0.00 1.28 0.71 0.70 0.00 0.00 2.06 2.67 1.45 3.30 1.90 0.58 0.33 0.00 1.43 0.00 1.39 0.00 0.00 1.29 0.61 2.24 0.98 0.00 1.57 1.10 0.00 0.00 0.74 K jcn_only_AD CG3829,I_chr2R_20874677_20875710,I_chr2R_20874711_20875717,I_chr2R_20875172_20875710,I_chr2R_20875497_20875710 chr2R + chr2R_20875497_20875710;chr2R_20875350_20875710;chr2R_20874711_20875710 chr2R_20875172_20875710 chr2R_20875711_20875810;chr2R_20874611_20874710 2.94 NA 0.00 2.94 4.00 3.12 7.69 2.38 1.47 NA 0.00 2.08 6.90 3.03 2.94 4.55 0.00 4.88 0.00 3.41 0.00 0.00 NA NA NA 2.56 NA NA 9.09 NA 0.00 NA NA 0.00 NA NA NA NA NA 3.70 NA 2.08 8.00 NA NA 4.55 NA 0.00 6.38 NA NA NA NA NA 10.71 NA NA 10.00 K jcn_only_AD ZnT63C chr3L + chr3L_3303853_3304601;chr3L_3304022_3304601 chr3L_3303837_3304601 chr3L_3304602_3304665;chr3L_3303742_3303836 5.23 3.31 8.40 3.01 7.63 3.31 6.16 6.94 6.21 3.36 4.24 4.62 6.67 5.17 3.39 2.58 4.59 11.21 2.54 8.25 5.15 10.92 6.30 6.06 3.51 4.21 6.12 7.69 1.67 2.06 8.48 7.69 1.89 8.33 5.56 3.06 8.99 5.30 5.93 3.42 7.07 5.06 7.45 6.81 21.21 5.77 5.23 1.89 5.58 5.19 5.17 3.36 6.52 3.33 3.09 5.23 9.24 2.50 K jcn_only_AA Ark,I_chr2R_12909344_12909416,RI_chr2R_12912984_12913058 chr2R + chr2R_12912984_12913058 chr2R_12912984_12913038 chr2R_12912884_12912983;chr2R_12913059_12913158 100.00 98.11 97.62 100.00 100.00 100.00 99.08 98.95 97.83 100.00 100.00 98.95 100.00 100.00 100.00 100.00 97.67 100.00 100.00 97.65 100.00 98.91 98.53 100.00 96.43 100.00 100.00 93.10 100.00 96.77 96.84 100.00 100.00 98.02 100.00 97.30 100.00 93.33 100.00 100.00 100.00 97.44 100.00 98.36 100.00 100.00 97.87 100.00 98.90 98.55 98.15 97.67 100.00 96.97 98.59 97.06 100.00 98.00 N alternative_donor CG9339,RE_chr2L_20903555_20916904,I_chr2L_20903560_20918638,I_chr2L_20922613_20922685 chr2L - chr2L_20917121_20918798;chr2L_20917121_20918638 chr2L_20917121_20918093 chr2L_20916905_20917120;chr2L_20918799_20918888 31.11 28.57 29.41 32.35 33.33 38.46 39.39 37.14 40.48 28.57 27.27 40.74 23.81 33.33 33.33 31.11 46.15 41.67 27.27 29.73 33.33 20.00 19.05 42.86 33.33 30.77 41.67 40.00 25.00 31.25 33.33 22.22 25.00 37.50 28.57 31.25 15.38 20.00 33.33 20.00 33.33 34.62 37.50 21.43 25.00 13.33 9.09 25.00 31.43 28.57 30.77 18.75 14.29 12.50 50.00 22.22 33.33 41.67 K alternative_donor CG8949,I_chrX_16966573_16966630,I_chrX_16971501_16971713 chrX - chrX_16966573_16966681 chrX_16966573_16966630 chrX_16966487_16966572;chrX_16966682_16966730 0.00 5.56 0.00 0.00 5.26 0.00 3.45 0.00 4.08 NA 0.00 2.00 3.33 0.00 5.13 0.00 0.00 0.00 3.12 1.96 0.00 9.68 3.23 0.00 0.00 4.35 6.90 0.00 5.88 4.76 8.00 5.56 4.44 2.22 4.55 0.00 2.94 0.00 3.70 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 K intron_retention Eb1,RI_chr2R_2640290_2642206,I_chr2R_2640494_2642206,I_chr2R_2641187_2642206,RI_chr2R_2641944_2642025,I_chr2R_2641954_2642206,I_chr2R_2642491_2642549 chr2R + chr2R_2640290_2640347 chr2R_2640289_2640290;chr2R_2640347_2640348 chr2R_2640190_2640289;chr2R_2640348_2640353 0.00 0.00 0.00 0.45 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA E_chr2RHet_2881760_2912543,eIF-4B,I_chr2RHet_2903246_2912532,I_chr2RHet_2912605_2917250 chr2RHet + chr2RHet_2901839_2902098 chr2RHet_2901839_2902093 chr2RHet_2901816_2901838;chr2RHet_2902099_2902500 100.00 100.00 100.00 100.00 98.86 100.00 100.00 99.55 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.50 99.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.41 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.55 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG17683,I_chr2R_18774_18869,I_chr2R_19002_19060 chr2R + chr2R_18998_19060 chr2R_19002_19060 chr2R_19061_19124;chr2R_18902_18997 100.00 93.75 92.31 100.00 100.00 100.00 95.00 95.83 96.77 NA 100.00 100.00 87.50 92.31 100.00 100.00 94.44 92.31 94.44 100.00 100.00 100.00 94.44 100.00 100.00 100.00 96.00 92.31 100.00 100.00 92.00 100.00 88.89 100.00 100.00 100.00 94.12 100.00 100.00 95.24 NA 95.45 93.75 92.86 100.00 90.00 92.86 100.00 96.67 100.00 93.75 100.00 100.00 100.00 100.00 90.91 100.00 100.00 K intron_retention CtBP chr3R + chr3R_8838056_8845063 chr3R_8838055_8838056;chr3R_8845063_8845064 chr3R_8837730_8838055;chr3R_8845064_8845536 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.51 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 K jcn_only_AA CG12024,REI_chr3L_1857404_1857509 chr3L + chr3L_1857404_1857464;chr3L_1857404_1857509 chr3L_1857404_1857512 chr3L_1857304_1857403;chr3L_1857513_1857609 45.36 46.34 47.73 61.22 44.68 53.33 41.03 31.91 45.36 43.24 39.02 46.81 42.86 39.29 52.08 38.10 39.39 63.89 54.17 42.57 52.63 32.10 53.61 50.56 36.59 50.00 41.46 52.33 45.78 50.53 57.14 38.60 41.54 50.77 31.03 28.57 53.33 43.37 43.82 48.08 57.69 44.58 56.67 45.88 47.67 43.08 47.13 35.00 50.00 40.23 47.73 35.71 51.95 38.46 41.67 41.38 47.87 43.24 K intron_retention RpS20,snoRNA:Psi28S-2562 chr3R + chr3R_16648582_16648853 chr3R_16648581_16648582;chr3R_16648853_16648854 chr3R_16648524_16648581;chr3R_16648854_16649080 99.50 99.68 99.22 99.15 99.74 99.34 99.48 99.69 99.71 99.06 99.71 99.25 99.07 99.56 99.69 99.50 99.86 99.50 99.38 99.26 99.13 99.65 99.72 99.50 99.75 99.45 99.48 99.48 97.47 99.54 99.35 98.92 98.82 99.64 99.42 99.04 99.51 99.73 99.66 99.41 99.20 99.63 99.26 99.73 99.32 99.70 99.53 99.31 99.49 99.79 99.51 99.75 99.50 99.60 99.22 99.57 99.64 99.39 N jcn_only_AA CG34140,CG34140_Mkp,noncoding_9561 chr3L - chr3L_184068_184131 chr3L_184073_184131 chr3L_184132_184197;chr3L_184008_184067 79.46 77.03 100.00 79.52 75.00 100.00 100.00 85.71 81.08 100.00 73.58 77.19 75.44 66.67 81.43 81.13 77.78 100.00 100.00 81.08 76.19 78.85 79.46 80.85 79.66 73.53 75.00 77.38 80.77 100.00 74.07 100.00 100.00 100.00 80.77 74.68 75.82 80.00 78.41 78.08 65.38 79.21 100.00 86.15 100.00 70.59 75.86 100.00 78.81 76.71 81.05 75.00 73.68 67.27 75.93 77.94 79.49 100.00 K alternative_acceptor Gpo-1,I_chr2R_11747621_11747699,EI_chr2R_11747445_11747699,I_chr2R_11749758_11750187,I_chr2R_11756325_11756380 chr2R - chr2R_11748228_11749386 chr2R_11748259_11749386 chr2R_11749387_11749428;chr2R_11748106_11748227 100.00 100.00 NA NA NA NA 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 90.91 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 87.50 K jcn_only_AA CG3608 chr2R + chr2R_20500970_20501033 chr2R_20500970_20501030 chr2R_20500901_20500969;chr2R_20501034_20501099 98.90 100.00 100.00 100.00 100.00 96.88 100.00 98.48 100.00 100.00 NA 97.40 100.00 96.55 100.00 96.88 96.30 100.00 96.77 98.85 100.00 95.56 100.00 97.14 100.00 100.00 96.36 96.67 100.00 95.52 97.62 96.51 100.00 100.00 96.67 100.00 100.00 97.83 100.00 96.91 98.91 98.86 100.00 98.67 98.89 97.65 100.00 99.23 100.00 100.00 98.31 100.00 97.92 97.50 98.36 100.00 97.53 98.73 K cassette CG31619 chr2L + chr2L_21719644_21725067 chr2L_21719644_21720358;chr2L_21720482_21725067 chr2L_21720359_21720481 chr2L_21719514_21719643;chr2L_21725068_21725445 8.45 7.55 11.11 4.41 5.26 5.00 5.71 11.48 7.69 2.86 NA 11.63 NA 8.89 7.55 7.58 9.43 25.00 10.81 19.12 NA 16.67 5.26 6.90 15.38 6.98 6.38 NA 8.33 9.80 5.41 7.32 6.52 10.13 11.54 26.09 10.53 10.42 11.48 9.78 5.26 7.34 7.69 10.00 13.11 8.54 10.87 9.30 6.25 6.90 8.45 12.90 10.34 5.56 8.47 8.20 4.88 6.09 K alternative_donor CG31998,I_chr4_225419_226294 chr4 - chr4_225419_226474;chr4_225419_226366 chr4_225419_226284 chr4_225319_225418;chr4_226475_226518 0.00 0.00 0.00 5.41 0.00 0.00 5.41 6.06 4.35 NA 0.00 3.85 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 16.67 20.00 NA NA 0.00 NA 0.00 3.70 0.00 0.00 0.00 NA NA 0.00 NA 5.26 0.00 0.00 NA NA NA 0.00 3.85 NA 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention Nc73EF,I_chr3L_16950628_16951334,I_chr3L_16950952_16952198,I_chr3L_16951588_16952198,I_chr3L_16951626_16952198,I_chr3L_16952138_16952198,I_chr3L_16952985_16955434,I_chr3L_16953768_16954599 chr3L + chr3L_16948643_16952198 chr3L_16948642_16948643;chr3L_16952198_16952199 chr3L_16948635_16948642;chr3L_16952199_16952207 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.33 0.00 NA NA 1.72 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA 6.25 NA NA NA NA 0.00 0.00 NA NA NA NA NA 1.92 NA NA NA NA NA 0.00 NA NA NA K intron_retention scu,noncoding_24518 chrX + chrX_17985424_17985984 chrX_17985423_17985424;chrX_17985984_17985985 chrX_17985361_17985423;chrX_17985985_17986886 1.19 0.91 1.46 1.51 1.13 0.00 0.00 1.52 0.56 2.24 1.21 1.19 1.11 3.64 0.00 3.48 0.64 3.10 0.75 1.64 2.76 5.38 1.10 2.40 1.75 1.24 3.55 2.14 1.12 1.03 0.83 1.16 0.98 0.00 0.00 0.70 0.93 1.24 1.31 1.86 0.00 1.10 0.00 0.52 1.52 1.08 1.91 0.00 2.41 0.51 2.78 1.56 2.12 1.03 1.67 0.00 2.19 2.21 K intron_retention CG8963,I_chr2R_12906431_12906583,I_chr2R_12906930_12906989 chr2R - chr2R_12906855_12906937 chr2R_12906854_12906855;chr2R_12906937_12906938 chr2R_12906830_12906854;chr2R_12906938_12907019 57.53 NA 50.00 36.84 63.64 60.00 55.00 50.00 40.54 70.00 87.50 52.00 45.45 66.67 71.43 42.86 28.57 NA 50.00 50.00 NA 52.00 73.68 60.00 87.50 81.82 80.00 58.82 69.23 66.67 87.50 NA 66.67 56.25 NA NA 46.15 45.45 66.67 56.00 80.00 60.87 46.15 50.00 60.00 47.06 56.25 66.67 55.56 50.00 45.00 NA NA NA 41.67 80.00 64.29 61.54 K alternative_donor CG12393,CG9135 chr2L + chr2L_6048635_6048693;chr2L_6048631_6048693 chr2L_6048627_6048693 chr2L_6048694_6048702;chr2L_6048512_6048626 4.55 5.56 0.00 4.35 0.00 9.09 5.56 4.00 0.00 NA 8.33 0.00 0.00 0.00 6.67 3.23 7.69 4.00 0.00 9.68 0.00 4.55 0.00 9.09 NA 5.00 7.14 0.00 12.50 12.50 8.33 10.00 9.09 4.00 11.11 0.00 0.00 0.00 4.55 5.00 10.00 4.76 0.00 0.00 8.33 15.38 0.00 7.69 4.35 0.00 0.00 10.00 0.00 0.00 5.88 0.00 6.25 14.29 K intron_retention Zasp52,I_chr2R_11690989_11702233,I_chr2R_11690993_11695684,I_chr2R_11690993_11701815,I_chr2R_11690993_11701987,E_chr2R_11690995_11702237 chr2R - chr2R_11690993_11704264 chr2R_11690992_11690993;chr2R_11704264_11704265 chr2R_11690895_11690992;chr2R_11704265_11704488 0.00 0.00 0.00 0.00 5.00 2.27 3.03 2.22 2.21 0.00 4.17 2.70 7.14 1.89 5.00 4.48 5.77 1.96 0.00 0.00 2.56 0.00 0.00 0.00 0.00 6.38 3.51 0.00 0.00 0.00 3.12 0.00 0.00 3.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.90 0.00 0.00 0.00 0.00 0.00 0.00 2.97 0.00 1.79 0.00 NA 0.00 3.90 0.00 0.00 0.00 K jcn_only_AA CG7927,I_chr3L_8109906_8110404 chr3L + chr3L_8105815_8106114 chr3L_8105815_8106111 chr3L_8105594_8105814;chr3L_8106115_8106427 100.00 100.00 98.86 97.98 98.63 98.84 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.70 100.00 97.65 100.00 100.00 100.00 98.17 100.00 100.00 98.68 98.86 100.00 100.00 98.99 100.00 100.00 99.33 99.24 100.00 98.70 100.00 98.72 100.00 100.00 98.95 100.00 98.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.97 100.00 98.18 100.00 98.95 100.00 100.00 98.70 K jcn_only_AA RI_chrX_502548_513324,CG13366,I_chrX_509497_513324,I_chrX_513176_513324,I_chrX_513519_513631 chrX - chrX_509546_513324 chrX_513176_513324 chrX_513325_513424;chrX_508807_509545 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.76 NA NA NA NA NA NA NA NA NA NA K intron_retention CG6954,I_chr3R_18492755_18493701,I_chr3R_18492801_18502630,I_chr3R_18493099_18493701 chr3R + chr3R_18493765_18502630 chr3R_18493764_18493765;chr3R_18502630_18502631 chr3R_18493705_18493764;chr3R_18502631_18502730 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA 7.69 NA NA NA NA NA NA NA 5.26 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG14741 chr3R - chr3R_7899339_7900180 chr3R_7899338_7899339;chr3R_7900180_7900181 chr3R_7899048_7899338;chr3R_7900181_7900195 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.91 99.28 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor RpL12,I_chr2R_19948517_19948655,RI_chr2R_19948517_19948677,I_chr2R_19948517_19948682 chr2R + chr2R_19948517_19948672;chr2R_19948517_19948682;chr2R_19948517_19948677 chr2R_19948517_19948655 chr2R_19948417_19948516;chr2R_19948683_19948755 0.03 0.05 0.00 0.04 0.00 0.13 0.00 0.05 0.03 0.12 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.24 0.05 0.05 0.09 0.00 0.10 0.25 0.10 0.00 0.06 0.00 0.10 0.00 0.00 0.00 0.04 0.00 0.08 0.05 0.08 0.00 0.00 0.00 0.06 0.05 0.04 0.11 0.00 0.00 0.05 0.00 0.04 0.04 0.00 0.00 0.07 0.09 K intron_retention CG31886 chr2L - chr2L_8955587_8958877 chr2L_8955586_8955587;chr2L_8958877_8958878 chr2L_8953483_8955586;chr2L_8958878_8959051 18.20 NA NA NA NA NA 46.15 16.67 14.29 NA NA 15.38 NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA 11.76 NA NA NA NA NA 25.00 NA 17.65 11.76 NA NA NA NA NA 33.33 NA 25.00 NA NA NA 18.75 NA NA NA K alternative_last_exon CG13085,REI_chr2L_19426699_19427208,I_chr2L_19426780_19427208,CG16771,I_chr2L_19426895_19427208,I_chr2L_19427121_19427208 chr2L + chr2L_19426699_19429401 chr2L_19426699_19427208 chr2L_19429402_19430270 chr2L_19427209_19429224 chr2L_19426680_19426698 97.62 98.10 98.30 97.33 97.92 97.99 97.65 97.33 97.81 96.74 98.68 98.03 94.78 97.93 97.58 96.55 96.81 98.58 98.33 97.85 97.96 97.58 96.15 96.59 97.30 98.51 97.65 98.31 97.07 97.46 98.05 96.35 99.01 97.90 96.48 98.73 97.44 97.95 97.02 96.86 97.50 98.26 98.45 96.36 98.74 97.07 96.59 97.62 97.79 96.47 95.71 96.64 97.13 95.65 97.83 96.94 98.21 97.96 K jcn_only_AD CG33655,I_chr2R_17207309_17207365 chr2R - chr2R_17207309_17207369 chr2R_17207309_17207365 chr2R_17207209_17207308;chr2R_17207370_17207465 8.89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention eIF4G,I_chr4_948813_950447 chr4 - chr4_936894_937492 chr4_936893_936894;chr4_937492_937493 chr4_936747_936893;chr4_937493_937716 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD wun2,I_chr2R_5304606_5304660 chr2R + chr2R_5304299_5304362 chr2R_5304302_5304362 chr2R_5304363_5304430;chr2R_5304233_5304298 100.00 100.00 99.12 100.00 98.98 100.00 100.00 100.00 99.74 100.00 99.24 100.00 100.00 100.00 100.00 98.97 100.00 100.00 99.29 99.30 100.00 100.00 99.64 100.00 100.00 100.00 98.80 99.47 100.00 99.55 100.00 100.00 98.78 99.49 100.00 99.15 100.00 100.00 99.65 99.43 100.00 99.68 100.00 100.00 99.43 100.00 100.00 100.00 100.00 99.41 99.69 100.00 100.00 100.00 100.00 99.64 100.00 100.00 K jcn_only_AA CG11125 chr2R + chr2R_3336125_3336287 chr2R_3336125_3336263 chr2R_3335817_3336124;chr2R_3336288_3336446 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 NA 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 3.03 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Klp68D chr3L + chr3L_11788772_11788957 chr3L_11788799_11788957 chr3L_11788958_11789721;chr3L_11788723_11788771 96.87 NA NA NA NA NA 96.77 NA 97.67 NA NA 96.30 NA 95.24 NA 100.00 NA 100.00 NA 96.00 NA 100.00 95.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 96.97 NA 90.00 NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG11063 chrX - chrX_13721139_13721372 chrX_13721154_13721372 chrX_13721373_13721542;chrX_13721076_13721138 23.66 28.57 25.93 29.25 28.57 21.62 21.21 27.27 35.48 15.62 35.00 27.78 26.23 14.06 16.25 25.64 31.48 25.93 30.67 22.70 25.71 26.67 25.53 23.53 20.31 31.82 23.66 19.64 16.89 28.04 18.09 18.81 28.32 21.37 24.76 27.03 32.98 24.68 26.36 18.89 26.14 21.08 33.33 20.78 21.82 18.81 16.33 25.82 25.34 22.02 21.88 12.24 23.64 18.68 19.09 19.05 21.43 23.20 K intron_retention CycD,I_chrX_15803256_15803313 chrX - chrX_15803256_15803313 chrX_15803255_15803256;chrX_15803313_15803314 chrX_15803156_15803255;chrX_15803314_15803380 95.00 100.00 NA 94.12 NA 100.00 94.44 100.00 94.12 NA NA 85.71 80.00 90.00 NA 100.00 NA NA 92.31 95.00 NA NA 100.00 100.00 100.00 100.00 100.00 77.78 100.00 NA 88.89 NA 90.00 100.00 88.89 100.00 NA 90.91 90.00 90.91 NA 100.00 100.00 NA NA 100.00 NA NA 94.74 100.00 100.00 NA NA 88.89 NA NA NA 88.89 K alternative_acceptor CG8412,I_chr3R_5583152_5583200 chr3R + chr3R_5583152_5583217 chr3R_5583152_5583200 chr3R_5583052_5583151;chr3R_5583218_5583300 0.00 0.00 0.00 0.00 0.00 3.85 1.92 0.00 2.33 0.00 0.00 5.26 0.00 0.00 3.45 3.85 0.00 4.00 4.55 3.12 0.00 10.00 9.38 0.00 0.00 0.00 2.33 6.67 0.00 4.17 3.39 0.00 0.00 2.86 0.00 0.00 5.00 0.00 3.23 2.50 0.00 0.00 0.00 0.00 4.76 0.00 0.00 4.35 2.50 0.00 0.00 0.00 NA 0.00 0.00 0.00 4.55 NA K jcn_only_AA CG8399,E_chr2R_11909562_11911687,E_chr2R_11909562_11911694,E_chr2R_11909564_11911694 chr2R + chr2R_11911365_11911590 chr2R_11911365_11911563 chr2R_11911262_11911364;chr2R_11911591_11911719 4.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.00 NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG1965,I_chr3R_2902064_2902611 chr3R + chr3R_2894671_2894727 chr3R_2894670_2894671;chr3R_2894727_2894728 chr3R_2894430_2894670;chr3R_2894728_2894910 0.00 0.00 0.00 2.44 NA 0.00 0.00 0.00 1.82 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.90 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 1.75 10.53 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K cassette east,CR_chrX_1912038_1912737 chrX + chrX_1912038_1912737 chrX_1912038_1912112;chrX_1912120_1912737 chrX_1912113_1912119 chrX_1911938_1912037;chrX_1912738_1912837 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention app,RI_chr3L_12201038_12201989,I_chr3L_12259361_12259754 chr3L - chr3L_12205868_12206192 chr3L_12205867_12205868;chr3L_12206192_12206193 chr3L_12205753_12205867;chr3L_12206193_12206397 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.06 0.00 4.65 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG5708,I_chr2L_10225966_10226334,I_chr2L_10225966_10226377 chr2L - chr2L_10225966_10226773 chr2L_10225966_10226664 chr2L_10225874_10225965;chr2L_10226774_10226842 100.00 NA NA NA NA NA 100.00 100.00 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA K jcn_only_AA CG2691,noncoding_23539 chrX - chrX_13518134_13518196 chrX_13518140_13518196 chrX_13518197_13518439;chrX_13517580_13518133 100.00 100.00 100.00 100.00 100.00 98.70 98.67 99.03 97.62 100.00 100.00 98.67 98.15 100.00 100.00 98.57 100.00 100.00 100.00 99.07 100.00 100.00 99.19 99.26 100.00 100.00 97.67 99.10 97.79 99.17 100.00 100.00 99.22 99.06 100.00 96.88 100.00 100.00 99.30 98.67 100.00 98.75 100.00 100.00 100.00 98.99 100.00 99.53 100.00 98.85 100.00 98.75 98.82 97.50 98.57 100.00 100.00 99.54 K intron_retention chb,noncoding_13909 chr3L + chr3L_21169629_21171196 chr3L_21169628_21169629;chr3L_21171196_21171197 chr3L_21168749_21169628;chr3L_21171197_21175379 0.00 0.00 0.00 1.96 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.52 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K intron_retention Dek chr2R + chr2R_12743809_12744310 chr2R_12743808_12743809;chr2R_12744310_12744311 chr2R_12743780_12743808;chr2R_12744311_12744557 7.56 12.99 7.22 5.56 7.46 12.68 4.48 7.56 6.22 5.63 6.06 9.42 6.49 11.11 8.79 9.00 6.33 10.61 10.17 4.42 14.58 4.04 8.92 10.78 4.49 14.29 10.14 10.71 3.45 4.39 13.89 3.21 3.17 7.01 8.77 9.52 4.08 9.09 7.08 6.47 4.23 8.75 8.45 6.33 2.42 6.19 13.33 1.47 9.52 23.26 7.14 10.00 11.48 17.65 8.14 18.87 5.00 1.50 K intron_retention mri,RI_chr3L_201061_201173,I_chr3L_212783_212843 chr3L + chr3L_201759_201816 chr3L_201758_201759;chr3L_201816_201817 chr3L_201441_201758;chr3L_201817_202165 11.11 9.89 12.28 46.94 11.32 8.06 16.25 13.48 11.27 5.71 12.70 15.79 7.81 3.33 8.64 9.52 12.73 15.69 9.23 7.24 11.11 17.50 14.41 9.52 28.30 12.90 11.11 12.00 11.32 9.09 21.74 8.86 14.81 10.00 12.79 46.51 9.01 12.35 12.03 6.09 29.41 12.78 10.71 9.47 2.75 7.30 9.45 4.29 10.92 11.35 7.77 10.42 4.44 11.21 14.29 10.08 5.16 6.67 K intron_retention RI_chr3L_20370940_20371530,I_chr3L_20374844_20374891,fbl chr3L + chr3L_20381948_20383015 chr3L_20381947_20381948;chr3L_20383015_20383016 chr3L_20381769_20381947;chr3L_20383016_20383308 1.75 0.00 2.94 8.20 0.00 2.78 6.25 0.00 2.58 0.00 2.56 2.68 0.00 1.69 3.95 1.35 0.00 1.56 2.13 1.60 4.26 5.36 1.75 1.96 3.03 0.00 3.15 1.52 2.78 1.27 3.70 0.00 0.00 2.75 0.00 1.89 1.46 0.00 0.00 1.34 0.00 4.80 3.57 0.00 3.85 2.44 4.05 0.00 3.03 3.70 0.00 0.00 0.00 0.00 4.11 1.37 2.56 2.63 K alternative_donor EI_chr3R_7069743_7070508,CG5214,I_chr3R_7070289_7070508,I_chr3R_7070385_7070508 chr3R + chr3R_7069743_7070508 chr3R_7070239_7070508 chr3R_7070509_7070608;chr3R_7069738_7069742 98.65 100.00 100.00 96.49 97.14 97.78 96.15 98.55 98.90 95.00 96.88 98.80 100.00 100.00 96.43 98.65 100.00 97.67 100.00 100.00 100.00 98.00 100.00 100.00 96.55 100.00 100.00 100.00 97.96 100.00 93.10 98.41 98.98 100.00 97.92 97.30 96.77 100.00 98.46 95.51 98.00 98.88 97.37 96.77 98.65 100.00 97.96 98.94 100.00 100.00 100.00 97.73 97.56 100.00 98.46 100.00 98.15 97.27 K intron_retention Doa,I_chr3R_24715823_24718923,I_chr3R_24747391_24747896 chr3R + chr3R_24715823_24726545 chr3R_24715822_24715823;chr3R_24726545_24726546 chr3R_24715727_24715822;chr3R_24726546_24726744 0.00 0.00 0.00 0.77 0.00 0.00 4.44 0.70 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.69 0.00 0.00 0.00 0.00 1.02 0.00 2.04 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Nmnat chr3R + chr3R_20772018_20772675;chr3R_20772018_20772197 chr3R_20772018_20772605 chr3R_20771916_20772017;chr3R_20772676_20772744 90.24 NA NA NA NA NA 90.91 100.00 87.50 59.09 NA 75.00 NA NA NA NA NA NA NA 92.00 NA 100.00 87.88 NA NA NA 100.00 NA 100.00 NA 86.36 90.00 NA 96.67 NA 100.00 91.30 NA NA 84.62 90.48 82.61 NA 77.42 86.96 94.87 NA 93.55 96.00 90.91 80.00 NA 81.48 86.36 NA 90.48 85.29 78.57 K intron_retention CG18012 chr3R - chr3R_13635522_13635579 chr3R_13635521_13635522;chr3R_13635579_13635580 chr3R_13635117_13635521;chr3R_13635580_13636140 2.59 3.21 1.70 20.44 2.86 1.38 1.18 4.26 2.01 2.50 1.69 2.30 0.00 2.59 3.64 2.26 3.54 2.61 2.33 3.18 2.99 0.00 7.38 3.39 8.60 7.76 10.49 11.11 4.88 0.00 3.67 2.15 1.49 1.73 3.30 0.93 2.61 2.37 1.99 3.12 9.28 2.46 2.34 0.67 1.65 2.63 3.95 3.12 2.49 1.55 3.12 4.21 3.05 1.40 1.27 2.86 1.05 0.00 N intron_retention CG8108,EI_chr3L_9859462_9859590,chr3L_9859594_9859878.0 chr3L + chr3L_9859462_9860377 chr3L_9859461_9859462;chr3L_9860377_9860378 chr3L_9859414_9859461 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 85.19 NA NA 100.00 100.00 42.11 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA NA 100.00 NA NA NA K jcn_only_AA Gs2 chrX + chrX_11318137_11318297;chrX_11318137_11318314 chrX_11318137_11318302 chrX_11318068_11318136;chrX_11318315_11318487 100.00 100.00 100.00 100.00 NA 100.00 95.12 NA 97.56 100.00 NA 97.96 NA NA 100.00 100.00 NA NA 100.00 98.41 NA 98.78 97.67 100.00 100.00 100.00 100.00 98.36 100.00 100.00 97.50 100.00 100.00 100.00 100.00 93.62 100.00 NA 98.25 98.53 100.00 100.00 NA 100.00 96.88 100.00 94.92 100.00 97.44 99.36 100.00 NA 100.00 100.00 100.00 NA 100.00 NA K intron_retention Pk92B chr3R + chr3R_15706033_15706604 chr3R_15706032_15706033;chr3R_15706604_15706605 chr3R_15705838_15706032;chr3R_15706605_15706783 4.65 8.51 0.00 1.75 4.65 0.00 9.38 1.67 4.00 3.85 0.00 4.55 6.67 0.00 3.64 6.56 0.00 11.76 3.70 6.45 5.26 10.14 6.67 4.88 13.51 6.25 4.55 0.00 8.00 3.08 13.46 9.09 10.67 1.82 10.81 13.46 2.44 8.89 5.97 3.12 12.50 6.58 7.69 6.78 0.00 0.00 0.00 6.90 3.66 0.00 9.38 0.00 6.25 0.00 4.17 5.26 0.00 0.00 K jcn_only_AD gcl,I_chr2R_4611970_4612145,psnoRNA:gcl-a,I_chr2R_4614277_4614332 chr2R + chr2R_4611943_4614119 chr2R_4611970_4614119 chr2R_4614120_4614231;chr2R_4611870_4611942 100.00 NA NA 100.00 NA NA NA 100.00 92.59 NA NA 93.10 NA NA NA 100.00 NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA 96.67 96.88 NA NA NA NA NA 100.00 NA 100.00 NA NA NA 100.00 NA 95.45 100.00 NA NA NA NA NA NA NA NA 96.15 K jcn_only_AD CG14939,RI_chr2L_11812683_11813150 chr2L - chr2L_11812683_11813633;chr2L_11812683_11813150 chr2L_11812683_11813724 chr2L_11812583_11812682;chr2L_11813725_11813792 93.33 82.86 95.24 95.00 97.44 92.86 94.29 89.41 93.83 NA 95.77 95.15 97.67 97.06 93.33 94.29 95.56 96.00 93.55 92.86 97.14 85.71 NA NA NA 92.16 NA NA 79.17 NA 95.24 80.65 93.33 92.86 NA NA 90.48 86.36 88.00 90.91 NA 97.17 96.00 75.00 95.24 NA NA 90.32 95.10 NA NA 85.19 NA NA 93.22 NA 91.30 92.59 K intron_retention NUCB1,RI_chr3L_17794900_17794991 chr3L - chr3L_17791066_17791126 chr3L_17791065_17791066;chr3L_17791126_17791127 chr3L_17790968_17791065;chr3L_17791127_17792652 99.36 99.17 98.71 99.10 98.70 99.04 99.68 98.86 98.66 97.92 100.00 98.36 99.24 99.40 99.29 99.73 99.36 99.20 99.55 100.00 100.00 96.23 100.00 99.25 98.81 99.12 98.77 100.00 98.91 100.00 100.00 100.00 98.04 99.06 100.00 100.00 98.99 100.00 98.95 100.00 98.94 99.65 100.00 99.26 99.03 99.41 98.48 100.00 99.73 100.00 98.77 100.00 100.00 100.00 100.00 98.54 99.55 99.40 K intron_retention I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17183481_17200781,I_chr3R_17183927_17184513,I_chr3R_17183927_17185306,RI_chr3R_17184319_17184513,I_chr3R_17184319_17185084,I_chr3R_17184319_17185284,noncoding_18168,RI_chr3R_17184792_17185306,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,RI_chr3R_17189607_17189988,I_chr3R_17190098_17190207,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,I_chr3R_17197790_17197863,RI_chr3R_17198778_17199052,RI_chr3R_17198803_17199019,RI_chr3R_17198803_17199052 chr3R - chr3R_17183927_17200781 chr3R_17183926_17183927;chr3R_17200781_17200782 chr3R_17183827_17183926;chr3R_17200782_17200881 6.67 5.71 9.52 10.00 10.00 18.75 12.50 27.59 8.70 NA 0.00 12.82 12.50 11.11 9.38 0.00 NA 9.09 11.11 5.17 6.67 23.08 9.68 0.00 5.88 NA 9.52 NA 0.00 4.35 20.00 0.00 3.64 6.90 10.53 8.33 5.00 8.33 4.88 6.12 4.35 11.54 5.88 0.00 0.00 4.17 0.00 5.45 17.95 0.00 14.63 13.33 0.00 6.25 0.00 5.71 9.52 0.00 K intron_retention TepIV,EI_chr2L_19548696_19549582 chr2L + chr2L_19552900_19552955 chr2L_19552899_19552900;chr2L_19552955_19552956 chr2L_19552473_19552899;chr2L_19552956_19553293 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention noncoding_13497,I_chr3L_19480207_19480774,I_chr3L_19480345_19480774 chr3L - chr3L_19480868_19481069 chr3L_19480867_19480868;chr3L_19481069_19481070 chr3L_19480775_19480867;chr3L_19481070_19481429 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 13.79 0.00 0.00 NA NA 0.00 NA 0.00 NA NA NA 14.29 NA NA NA 0.00 NA NA 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA 6.25 NA NA NA 0.00 0.00 NA 0.00 0.00 0.00 K intron_retention SF2,noncoding_17171,R_chr3R_12165489_12165639 chr3R - chr3R_12165578_12165633 chr3R_12165577_12165578;chr3R_12165633_12165634 chr3R_12165059_12165577;chr3R_12165634_12165733 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 NA 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG11148,I_chr4_876247_876311,I_chr4_882005_882418,RI_chr4_886921_887162 chr4 - chr4_876262_876311 chr4_876261_876262;chr4_876311_876312 chr4_876044_876261;chr4_876312_876411 5.74 2.13 7.50 19.48 8.33 5.41 7.41 11.76 6.00 NA 0.00 9.76 10.81 2.13 9.09 11.90 10.00 6.67 7.69 8.42 0.00 0.00 10.17 4.00 4.00 7.69 12.50 19.05 0.00 0.00 5.77 5.71 0.00 8.05 6.06 14.71 0.00 2.56 0.00 2.22 17.86 3.23 0.00 0.00 6.67 4.65 0.00 5.00 7.00 3.37 2.60 11.11 0.00 5.71 9.80 3.70 10.67 4.65 K alternative_acceptor msn,I_chr3L_2558033_2560115,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2558393_2560115;chr3L_2558390_2560115 chr3L_2558036_2560115 chr3L_2560116_2560215;chr3L_2557936_2558035 21.34 19.91 26.29 16.70 19.53 26.43 41.24 20.00 15.56 25.90 19.06 20.36 9.38 19.45 23.49 17.96 12.93 16.15 13.23 23.86 17.96 13.71 22.69 23.54 21.74 18.90 22.93 31.28 12.16 20.52 20.00 21.53 21.85 20.96 23.12 25.16 13.65 29.18 20.67 19.57 28.51 21.43 21.20 16.14 25.25 23.78 27.22 16.95 19.24 25.57 25.63 25.47 25.25 25.93 21.34 23.10 29.07 21.12 K intron_retention Mob2,RI_chr3L_11520443_11527440,CE_chr3L_11520917_11527526,RE_chr3L_11520925_11527489,RI_chr3L_11535932_11545929 chr3L - chr3L_11518614_11518679 chr3L_11518613_11518614;chr3L_11518679_11518680 chr3L_11517457_11518613;chr3L_11518680_11518776 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 1.76 3.32 0.34 0.00 0.43 0.00 0.35 0.66 1.05 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.45 0.00 0.00 K jcn_only_AA cdc2c,RI_chr3R_16562395_16562445 chr3R + chr3R_16562395_16562453 chr3R_16562395_16562445 chr3R_16562295_16562394;chr3R_16562454_16562545 4.35 NA NA NA NA NA NA 4.35 0.00 NA NA 16.00 NA NA NA NA NA NA NA 4.65 NA NA NA NA NA NA NA NA NA NA NA NA NA 9.52 NA NA NA NA 4.55 NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA K alternative_acceptor CG8116,I_chr3R_4542126_4542214,RI_chr3R_4542291_4542625,RI_chr3R_4542291_4542652,I_chr3R_4542561_4542617,I_chr3R_4545118_4545525 chr3R + chr3R_4542291_4542617;chr3R_4542291_4542625 chr3R_4542291_4542622 chr3R_4542215_4542290;chr3R_4542626_4542717 22.22 NA 20.00 20.00 33.33 NA 9.09 25.00 31.25 12.50 33.33 11.11 20.00 NA 0.00 16.67 33.33 22.22 16.67 29.41 28.57 21.74 25.00 25.00 NA NA 28.57 15.79 18.18 16.67 16.67 21.43 16.67 33.33 33.33 12.50 22.22 NA 25.00 28.00 33.33 21.43 NA 25.00 30.00 23.53 20.00 25.00 33.33 25.00 11.11 NA 16.67 NA 42.86 NA NA 15.00 K alternative_donor CkIalpha,I_chrX_12548371_12549203,I_chrX_12548704_12549203,I_chrX_12548772_12549203 chrX + chrX_12548828_12549203 chrX_12549003_12549203 chrX_12549204_12549210;chrX_12548759_12548827 66.67 NA NA 66.67 NA NA 77.78 62.50 100.00 NA NA 80.00 NA NA NA NA NA NA 60.00 60.00 NA 60.00 NA NA NA NA NA NA NA NA NA NA 83.33 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA 66.67 NA NA NA K intron_retention CG30349,lin chr2R + chr2R_4795402_4795454 chr2R_4795401_4795402;chr2R_4795454_4795455 chr2R_4794951_4795401;chr2R_4795455_4795984 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8178392_8178458 chr2L_8178398_8178458 chr2L_8178459_8178951;chr2L_8177779_8178391 99.57 100.00 99.60 99.72 99.56 100.00 99.21 99.23 99.71 100.00 99.34 99.56 99.56 99.52 100.00 100.00 99.57 100.00 99.56 99.49 100.00 99.40 99.49 99.00 100.00 99.48 99.51 99.57 99.52 100.00 100.00 100.00 99.50 99.74 100.00 99.25 100.00 99.01 99.78 100.00 98.04 100.00 100.00 99.80 100.00 100.00 98.62 99.09 99.49 99.58 99.34 98.99 99.34 98.06 99.59 100.00 99.48 100.00 N intron_retention CG12576,RI_chrX_21878289_21882347,I_chrX_21882735_21883714 chrX - chrX_21880638_21882347 chrX_21880637_21880638;chrX_21882347_21882348 chrX_21880570_21880637;chrX_21882348_21882447 5.41 0.00 0.00 NA NA NA 17.65 0.00 8.89 NA 0.00 7.69 12.50 10.71 0.00 0.00 5.88 NA NA 10.81 NA 22.73 0.00 0.00 NA NA 3.57 NA 0.00 7.14 6.67 NA 0.00 10.71 5.56 10.53 14.29 NA 0.00 9.38 NA 6.12 6.67 0.00 9.52 0.00 4.55 5.26 4.35 4.76 10.53 NA 0.00 NA 9.09 7.41 0.00 0.00 K intron_retention nes chr3L - chr3L_19253331_19253676 chr3L_19253330_19253331;chr3L_19253676_19253677 chr3L_19253215_19253330;chr3L_19253677_19253699 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA K intron_retention CG32176,RI_chr3L_17427238_17427301 chr3L + chr3L_17429478_17429612 chr3L_17429477_17429478;chr3L_17429612_17429613 chr3L_17429424_17429477;chr3L_17429613_17430643 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 10.53 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 17.65 K cassette Atpalpha,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16792336_16798894;chr3R_16792336_16794113 chr3R_16792336_16792829;chr3R_16792925_16798894,chr3R_16792925_16794113 chr3R_16792830_16792924 chr3R_16792236_16792335;chr3R_16798895_16798994 99.21 99.08 99.33 97.67 98.81 99.60 99.72 99.07 98.94 100.00 98.17 99.14 97.21 99.62 99.67 100.00 99.56 97.72 99.63 98.91 100.00 99.07 99.72 99.15 98.88 99.21 99.66 91.00 97.33 99.49 99.68 99.28 98.54 99.53 99.54 96.84 99.05 98.48 96.69 98.04 99.41 99.29 99.55 99.18 99.09 99.27 98.15 98.94 99.81 99.72 98.92 98.19 99.45 99.22 99.44 98.73 99.66 99.33 K intron_retention CG8596,RI_chr3L_7335271_7335405,I_chr3L_7336128_7336203,RI_chr3L_7336707_7336767,I_chr3L_7337046_7338155,I_chr3L_7340885_7340945 chr3L - chr3L_7335271_7335335 chr3L_7335270_7335271;chr3L_7335335_7335336 chr3L_7335171_7335270;chr3L_7335336_7335932 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor pnr,RI_chr3R_11852561_11855192 chr3R + chr3R_11864921_11864991 chr3R_11864930_11864991 chr3R_11864992_11865268;chr3R_11864309_11864920 70.67 66.67 65.33 72.64 70.00 69.75 69.87 70.67 71.28 74.51 75.18 72.12 76.24 71.57 74.52 64.75 78.23 68.32 70.49 68.42 72.54 67.50 74.89 70.98 72.95 68.03 68.97 73.03 71.58 70.45 71.55 71.01 78.31 68.31 73.08 66.67 70.50 65.92 68.69 73.86 80.38 71.15 72.73 65.41 69.46 74.86 74.07 76.30 68.69 64.92 71.43 66.67 68.68 66.46 69.44 63.13 70.62 76.47 K intron_retention Eps-15,I_chr2R_20660319_20660496 chr2R - chr2R_20657585_20659247 chr2R_20657584_20657585;chr2R_20659247_20659248 chr2R_20657212_20657584;chr2R_20659248_20659313 17.95 16.67 17.19 8.51 18.42 23.40 30.00 20.27 18.00 16.18 29.27 21.10 27.27 15.56 28.57 12.20 22.92 20.00 22.73 22.22 26.67 15.31 12.62 14.85 16.98 11.48 14.89 19.05 26.19 7.20 18.18 21.70 9.25 17.95 21.95 3.74 12.80 16.28 16.13 17.80 22.16 21.31 14.00 13.48 17.68 20.71 20.93 17.44 24.76 19.23 17.92 17.14 10.64 22.89 22.22 20.18 17.27 11.33 K multi_cassette Ten-m,EI_chr3L_22298865_22299141,I_chr3L_22300015_22300646,I_chr3L_22374182_22399991 chr3L - chr3L_22296709_22300646 chr3L_22296709_22296798;chr3L_22297211_22297345;chr3L_22297630_22298066;chr3L_22298865_22300646 chr3L_22296799_22297210;chr3L_22297346_22297629;chr3L_22298067_22298864 chr3L_22296163_22296708;chr3L_22300647_22300652 90.91 85.71 85.71 53.33 100.00 100.00 85.71 80.00 78.95 100.00 100.00 94.12 80.00 83.33 100.00 87.50 83.33 100.00 100.00 82.35 83.33 100.00 93.75 77.78 100.00 100.00 69.23 100.00 80.00 90.91 83.33 100.00 88.89 85.71 100.00 90.91 80.95 75.00 90.91 100.00 100.00 78.95 100.00 87.50 100.00 66.67 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 90.00 100.00 100.00 66.67 K cassette trol,I_chrX_2387249_2389980,I_chrX_2391522_2395659 chrX - chrX_2387249_2389073;chrX_2387249_2393243;chrX_2387249_2392054;chrX_2387249_2395659 chrX_2387249_2388436;chrX_2388671_2392054,chrX_2388671_2393243,chrX_2388671_2395659,chrX_2388671_2389073 chrX_2388437_2388670 chrX_2387149_2387248;chrX_2395660_2395759 10.07 13.64 8.11 2.83 8.00 7.14 4.55 9.80 11.50 14.29 5.71 19.25 5.00 10.45 8.65 6.76 12.16 10.00 8.51 11.67 5.26 9.80 11.43 12.24 14.63 11.94 9.09 22.22 10.00 7.81 9.52 15.00 6.14 9.40 8.33 13.33 11.61 15.56 11.96 11.54 11.11 10.06 8.57 21.43 27.78 7.69 NA 10.07 7.11 0.00 10.53 12.82 11.67 NA 11.40 10.53 5.26 12.07 K intron_retention CG12224 chr3R - chr3R_7806577_7806733 chr3R_7806576_7806577;chr3R_7806733_7806734 chr3R_7806554_7806576;chr3R_7806734_7807272 0.00 0.00 NA 12.50 NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA 11.11 NA NA NA 4.35 NA NA 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 4.35 0.00 NA 0.00 0.00 0.00 0.00 5.56 K intron_retention dpr17 chr3R + chr3R_7936756_7936809 chr3R_7936755_7936756;chr3R_7936809_7936810 chr3R_7936554_7936755;chr3R_7936810_7937080 98.00 96.30 100.00 100.00 100.00 94.12 93.33 95.83 100.00 88.89 90.91 100.00 100.00 96.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 88.24 100.00 96.88 94.44 100.00 100.00 100.00 93.33 93.33 100.00 100.00 96.00 100.00 95.24 100.00 100.00 93.75 96.97 96.97 96.67 100.00 100.00 100.00 92.31 97.30 96.88 100.00 97.78 96.77 97.50 94.74 100.00 100.00 100.00 96.88 98.00 94.44 K jcn_only_AD LSm7 chr2L - chr2L_16742443_16742625;chr2L_16742443_16742662 chr2L_16742443_16742634 chr2L_16742326_16742442;chr2L_16742663_16742986 2.51 4.55 1.30 2.90 4.84 1.49 0.78 2.91 0.56 5.13 5.08 1.94 1.23 1.89 2.60 1.98 4.08 2.30 4.04 3.30 3.23 0.00 5.41 2.27 2.08 4.55 0.00 5.19 0.00 0.00 0.00 2.22 5.17 0.73 0.00 NA 2.97 2.50 2.52 4.94 0.00 2.90 3.12 4.41 6.00 4.26 2.46 8.33 3.12 0.00 0.00 1.96 0.00 0.00 6.31 0.96 3.83 4.48 K intron_retention CG7878,I_chr3R_3952846_3953762 chr3R + chr3R_3950488_3950544 chr3R_3950487_3950488;chr3R_3950544_3950545 chr3R_3949852_3950487;chr3R_3950545_3950995 0.78 0.00 0.58 4.15 0.00 0.00 1.03 0.89 1.42 0.00 0.75 1.75 0.00 0.00 2.34 1.03 0.00 0.60 0.00 1.09 0.00 1.19 2.82 1.01 0.00 2.33 6.55 6.06 0.79 0.88 0.00 0.00 2.48 2.03 0.00 3.76 0.00 1.32 0.80 0.42 4.39 0.00 0.00 1.33 0.47 1.16 0.00 0.78 1.35 0.00 1.00 0.00 0.00 0.00 0.00 0.97 0.34 1.14 N jcn_only_AA CG2201 chr2L - chr2L_21618111_21623365 chr2L_21623130_21623365 chr2L_21623366_21623540;chr2L_21618011_21618110 34.11 37.50 0.00 0.00 NA NA 35.14 40.38 29.51 NA NA 0.00 NA 0.00 0.00 38.10 33.33 NA 0.00 38.89 50.00 NA 36.67 0.00 NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA 0.00 NA 40.00 0.00 NA NA 47.83 NA NA 34.88 NA NA NA NA NA 40.00 NA 37.04 NA K jcn_only_AA CG1116 chr3R + chr3R_1045578_1045640 chr3R_1045578_1045637 chr3R_1045416_1045577;chr3R_1045641_1045855 39.65 40.74 38.10 30.00 NA 30.00 37.50 51.52 42.86 NA NA 42.86 NA NA 25.00 NA NA 32.00 NA 41.38 NA 47.62 27.78 45.95 21.74 35.48 41.18 NA NA 31.25 NA 39.47 56.52 38.24 46.67 39.62 32.14 38.71 39.68 43.75 NA 53.57 35.00 35.00 32.56 34.09 40.00 NA 37.50 35.29 46.94 NA 40.48 48.21 47.83 51.28 52.00 41.94 K intron_retention Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_136631_137445 chr4_136630_136631;chr4_137445_137446 chr4_136241_136630;chr4_137446_139127 97.95 100.00 91.43 100.00 100.00 95.65 98.68 98.78 98.15 100.00 95.00 97.26 100.00 100.00 100.00 97.75 96.97 96.00 100.00 98.39 95.24 100.00 96.77 100.00 100.00 94.44 100.00 NA 75.00 100.00 97.50 100.00 96.97 97.14 96.43 96.00 100.00 100.00 94.12 100.00 97.56 96.30 97.30 96.67 100.00 98.39 96.15 94.44 100.00 100.00 94.44 96.15 94.44 100.00 100.00 100.00 93.18 97.06 K intron_retention CG1544 chr3R + chr3R_27026288_27026630 chr3R_27026287_27026288;chr3R_27026630_27026631 chr3R_27026126_27026287;chr3R_27026631_27026704 0.00 NA 0.00 NA NA 0.00 NA 5.88 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA 5.56 NA NA NA NA NA NA NA 9.09 NA NA NA 0.00 NA NA 8.00 NA NA NA NA NA 5.56 NA NA NA K intron_retention CG9007,I_chr3L_13995402_13996269,I_chr3L_13995402_13996272,I_chr3L_13995402_13996296,I_chr3L_13995480_13996292,RI_chr3L_14010982_14011111 chr3L + chr3L_13995402_13996292 chr3L_13995401_13995402;chr3L_13996292_13996293 chr3L_13995380_13995401;chr3L_13996293_13996360 7.14 NA NA 0.00 NA NA 0.00 12.50 8.33 NA NA 7.69 NA NA 7.14 8.57 NA NA 7.14 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 22.22 5.56 NA NA NA NA NA NA 8.70 NA NA NA NA NA 9.09 7.14 NA NA NA NA NA 6.67 NA NA NA K intron_retention srp,I_chr3R_11826508_11826910 chr3R + chr3R_11828046_11828592 chr3R_11828045_11828046;chr3R_11828592_11828593 chr3R_11827892_11828045;chr3R_11828593_11829749 100.00 100.00 100.00 99.24 98.57 98.28 98.88 100.00 100.00 100.00 98.77 99.38 100.00 100.00 97.94 100.00 98.72 98.75 100.00 99.53 98.73 100.00 98.92 98.33 100.00 98.48 96.61 98.44 99.04 100.00 98.88 100.00 99.50 99.21 100.00 100.00 100.00 100.00 98.77 99.25 100.00 98.82 100.00 100.00 100.00 100.00 100.00 99.53 100.00 100.00 98.72 100.00 100.00 98.48 100.00 98.65 100.00 100.00 K jcn_only_AA mub,RI_chr3L_21901021_21901163,I_chr3L_21908756_21909179 chr3L + chr3L_21901021_21907875 chr3L_21901021_21901163 chr3L_21900921_21901020;chr3L_21907876_21907932 0.00 2.17 1.64 0.00 2.70 0.00 0.00 0.00 0.83 0.00 6.25 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 4.35 0.00 5.00 0.00 0.00 2.44 NA 5.88 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 2.70 0.00 4.55 0.00 0.00 0.00 NA 3.12 3.23 0.00 0.00 8.00 0.00 0.00 NA NA 0.00 3.57 0.00 0.00 K intron_retention Zyx102EF,I_chr4_1079131_1080044,I_chr4_1079946_1080044,RI_chr4_1079959_1080044,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1079915_1080044 chr4_1079914_1079915;chr4_1080044_1080045 chr4_1079859_1079914;chr4_1080045_1080072 36.84 33.33 30.00 40.48 25.00 35.71 74.07 33.33 37.74 NA 30.77 47.22 42.86 41.18 31.82 32.14 38.10 33.33 33.33 36.84 36.36 NA 33.33 53.85 41.67 40.00 35.71 NA NA NA 28.57 NA NA 32.56 NA 78.57 36.36 70.00 NA 36.84 NA 42.50 29.17 30.77 NA 50.00 41.67 NA 39.13 NA 50.00 57.14 50.00 NA 39.13 33.33 29.41 11.11 K intron_retention RpS7,E_chr3R_26032339_26034298,I_chr3R_26032444_26033815,snoRNA:Psi28S-2149,snoRNA:Psi18S-1377e,snoRNA:Psi18S-1377d,snoRNA:Psi18S-1377c,snoRNA:Psi18S-1377b,snoRNA:Psi18S-1377a,snoRNA:Psi28S-2626 chr3R - chr3R_26032444_26033814 chr3R_26032443_26032444;chr3R_26033814_26033815 chr3R_26032344_26032443;chr3R_26033815_26034147 0.03 0.02 0.03 0.05 0.03 0.02 0.04 0.03 0.04 0.04 0.10 0.04 0.04 0.01 0.05 0.04 0.03 0.07 0.02 0.06 0.05 0.00 0.03 0.02 0.03 0.03 0.04 0.11 0.05 0.02 0.02 0.00 0.00 0.03 0.02 0.02 0.02 0.03 0.01 0.01 0.01 0.04 0.06 0.02 0.02 0.02 0.03 0.05 0.07 0.02 0.02 0.02 0.03 0.01 0.03 0.02 0.01 0.04 K intron_retention CG11063,CE_chrX_13722771_13723819 chrX - chrX_13721753_13722674 chrX_13721752_13721753;chrX_13722674_13722675 chrX_13721612_13721752;chrX_13722675_13722770 1.64 2.73 0.00 1.79 0.00 0.00 0.00 0.00 1.64 0.00 0.00 2.06 3.23 8.57 0.00 0.00 0.00 0.00 0.00 2.03 0.00 3.73 1.65 1.43 5.63 0.00 2.70 0.00 4.55 0.00 0.00 2.78 3.74 0.00 2.50 2.44 3.09 1.75 2.76 3.62 0.00 0.97 0.00 3.57 0.00 3.39 1.45 1.98 3.06 5.22 2.02 0.00 1.83 1.68 0.00 2.15 1.42 0.00 K alternative_acceptor mthl10 chr3L - chr3L_333641_333941 chr3L_333717_333941 chr3L_333942_334119;chr3L_333522_333640 3.81 1.39 2.74 5.71 5.88 1.67 10.42 4.21 5.22 0.00 5.13 3.81 9.09 5.77 4.55 3.03 1.96 3.39 5.00 4.24 4.44 4.55 4.17 3.39 6.67 5.26 3.77 5.56 11.11 5.00 2.22 2.78 4.35 2.60 6.90 4.76 4.41 1.85 2.91 4.12 0.00 3.67 3.92 1.39 3.39 6.00 0.00 7.32 3.70 2.13 2.74 3.45 0.00 0.00 6.58 1.79 1.61 0.00 K intron_retention Hsp60,E_chrX_11004167_11004862 chrX + chrX_11005445_11005507 chrX_11005444_11005445;chrX_11005507_11005508 chrX_11004074_11005444;chrX_11005508_11005811 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.11 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Amph,I_chr2R_8498227_8498492 chr2R + chr2R_8497142_8498083 chr2R_8497142_8497246;chr2R_8497382_8498083 chr2R_8497247_8497381 chr2R_8496734_8497141;chr2R_8498084_8498226 2.94 0.00 0.00 4.00 4.17 0.00 7.41 7.69 1.79 NA 44.44 3.23 3.33 5.26 0.00 0.00 0.00 2.94 2.38 1.59 25.00 NA 0.00 0.00 NA 4.55 0.00 NA 9.09 5.56 4.17 NA 0.00 5.56 NA 0.00 0.00 0.00 0.00 8.70 NA 4.00 2.94 2.94 0.00 NA 0.00 5.00 3.33 5.56 4.76 NA 7.69 NA 3.23 0.00 NA 0.00 K jcn_only_AA eIF5,noncoding_24049,EI_chrX_15885411_15885854,RI_chrX_15885416_15885611 chrX - chrX_15885411_15885854 chrX_15885416_15885854 chrX_15885855_15885912;chrX_15885316_15885410 93.47 NA 100.00 NA NA NA 93.75 93.33 93.10 NA NA 97.22 NA 100.00 NA 91.67 NA NA NA 96.15 NA NA NA NA NA NA NA NA NA NA 91.43 NA NA 91.30 NA 90.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA 93.62 NA NA NA NA NA NA NA NA 91.67 K alternative_acceptor f-cup,I_chr3R_9524004_9524059,EI_chr3R_9524613_9524789 chr3R - chr3R_9521865_9521924 chr3R_9521872_9521924 chr3R_9521925_9522068;chr3R_9521683_9521864 100.00 100.00 100.00 95.24 100.00 100.00 100.00 95.24 100.00 NA 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor Vps13,I_chr2R_3464510_3464571 chr2R + chr2R_3464510_3464571 chr2R_3464510_3464566 chr2R_3464410_3464509;chr2R_3464572_3464671 100.00 100.00 92.86 95.24 100.00 100.00 100.00 97.37 100.00 NA 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 NA 100.00 88.89 NA 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 96.97 100.00 95.24 87.50 100.00 NA 96.15 97.22 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 96.97 K cassette CG34325,I_chrX_16609323_16614744,I_chrX_16613170_16614744 chrX - chrX_16609323_16614744 chrX_16609323_16610470;chrX_16610696_16614744 chrX_16610471_16610695 chrX_16609223_16609322;chrX_16614745_16614802 100.00 100.00 100.00 94.44 100.00 92.86 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 97.67 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 K intron_retention XRCC1 chrX + chrX_5225653_5225714 chrX_5225652_5225653;chrX_5225714_5225715 chrX_5225564_5225652;chrX_5225715_5226043 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 1.01 0.00 0.00 2.44 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 1.59 1.39 2.67 0.00 0.00 1.54 8.51 8.51 0.00 0.00 0.00 0.00 3.17 0.00 0.00 2.08 0.00 0.00 2.35 0.00 1.05 0.00 0.00 0.00 2.99 0.00 0.00 1.32 4.94 0.00 0.00 0.00 0.00 0.00 0.00 1.47 1.61 K intron_retention sxc,I_chr2R_1203985_1205289,I_chr2R_1208121_1213310,I_chr2R_1213177_1213308 chr2R + chr2R_1194858_1194918 chr2R_1194857_1194858;chr2R_1194918_1194919 chr2R_1194848_1194857;chr2R_1194919_1195157 47.06 NA 54.55 39.29 NA 81.82 20.00 51.61 45.95 NA 41.67 47.83 18.52 61.54 30.77 64.86 46.15 NA 45.83 47.06 NA NA NA NA NA 25.00 77.78 NA NA NA 41.67 NA NA 62.50 NA NA NA NA NA 63.64 NA 53.85 46.15 NA NA NA NA 53.85 50.00 NA NA NA NA NA 42.86 NA NA NA K intron_retention CG12703 chrX + chrX_19651002_19651066 chrX_19651001_19651002;chrX_19651066_19651067 chrX_19650904_19651001;chrX_19651067_19651530 0.00 0.00 0.00 0.00 0.00 0.95 0.65 0.00 0.42 0.00 2.27 0.00 0.00 0.00 0.72 0.00 1.23 0.00 0.00 0.61 0.00 3.12 0.00 0.00 0.00 4.62 3.15 1.30 3.39 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.52 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Gbeta13F,I_chrX_15754284_15755167,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15754284_15755172;chrX_15754284_15755021;chrX_15754284_15755184;chrX_15754284_15755409;chrX_15754284_15755256;chrX_15754284_15754777;chrX_15754284_15755416;chrX_15754284_15755268 chrX_15754284_15755148 chrX_15754256_15754283 0.00 0.85 0.76 0.46 0.00 0.00 0.80 0.41 0.00 1.49 0.00 0.00 0.00 0.00 0.85 0.27 0.00 0.00 0.00 0.34 0.00 1.33 0.00 0.90 1.02 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 1.74 0.00 1.82 0.33 0.00 0.71 0.00 0.00 0.00 0.00 1.02 0.00 0.00 K alternative_donor lok,I_chr2L_20063155_20063377,RI_chr2L_20063248_20063377 chr2L + chr2L_20063172_20063377 chr2L_20063248_20063377 chr2L_20063378_20063477;chr2L_20063148_20063171 1.37 3.08 2.56 6.15 0.00 2.70 0.00 5.00 3.37 0.00 5.26 0.00 0.00 4.35 1.61 2.17 0.00 1.69 0.00 2.44 0.00 0.00 1.37 2.00 0.00 0.00 3.03 8.33 3.51 1.89 1.92 0.00 1.82 1.59 0.00 0.00 0.00 1.72 1.32 0.98 1.39 2.35 0.00 2.04 0.00 0.00 1.39 0.00 2.56 1.41 2.99 0.00 0.00 0.00 0.00 0.00 0.00 1.14 K intron_retention CG30187,F_chr2R_18805721_18805778,I_chr2R_18820842_18820922 chr2R - chr2R_18806035_18806090 chr2R_18806034_18806035;chr2R_18806090_18806091 chr2R_18805989_18806034;chr2R_18806091_18806313 2.22 0.00 5.00 1.72 2.63 5.56 3.28 7.04 5.22 0.00 0.00 3.51 6.00 2.94 2.56 6.52 6.52 0.00 2.22 1.83 0.00 5.71 0.00 0.00 0.00 0.00 2.78 0.00 3.12 0.00 1.82 3.57 0.00 5.26 9.09 0.00 2.60 0.00 1.32 5.26 12.00 6.56 12.50 1.77 13.64 0.00 0.00 8.57 10.94 1.59 0.00 0.00 0.00 0.00 2.04 2.13 4.00 12.00 K intron_retention CG12734,I_chr3L_3183812_3183932,I_chr3L_3184645_3185360 chr3L + chr3L_3183998_3184251 chr3L_3183997_3183998;chr3L_3184251_3184252 chr3L_3183933_3183997;chr3L_3184252_3184644 93.33 87.50 NA 83.33 NA NA 100.00 93.33 94.44 NA NA 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 96.55 NA 89.47 93.33 100.00 92.31 NA 94.44 92.86 100.00 87.50 NA 90.91 92.86 100.00 94.44 90.91 86.36 90.91 95.65 81.82 88.89 94.74 NA 100.00 91.67 85.71 100.00 93.33 100.00 93.33 95.65 100.00 92.86 93.33 NA 100.00 83.33 NA K cassette exba,I_chr3R_1423660_1424665,I_chr3R_1424091_1424665,I_chr3R_1425087_1425925,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1423660_1424665 chr3R_1423660_1423925;chr3R_1424065_1424665 chr3R_1423926_1424064 chr3R_1423560_1423659;chr3R_1424666_1424765 99.90 99.81 99.83 99.90 100.00 100.00 99.75 100.00 99.91 100.00 100.00 99.88 99.77 100.00 99.82 100.00 100.00 100.00 100.00 100.00 99.80 99.72 99.87 100.00 99.76 100.00 100.00 100.00 99.70 100.00 99.82 100.00 99.83 99.90 100.00 99.74 99.85 99.82 99.86 99.58 99.79 99.91 99.76 99.83 100.00 99.83 100.00 99.75 99.91 99.85 99.86 100.00 100.00 99.77 99.85 100.00 100.00 99.53 K jcn_only_AD achi,I_chr2R_8401767_8401934 chr2R - chr2R_8401767_8401848;chr2R_8401767_8402280 chr2R_8401767_8401934 chr2R_8401667_8401766;chr2R_8402281_8402519 4.76 0.00 NA 0.00 4.55 NA 4.76 7.41 10.81 NA NA 7.89 NA NA 11.54 4.55 8.70 NA 9.52 4.08 8.70 NA 8.11 9.38 20.83 4.17 NA NA 4.76 4.35 10.00 0.00 5.88 10.00 NA 0.00 6.06 NA 6.45 0.00 NA 7.89 5.00 NA 0.00 2.70 4.17 4.00 10.34 1.75 8.82 NA NA 0.00 4.55 0.00 4.17 0.00 K intron_retention Vha68-2 chr2L + chr2L_12977910_12977976 chr2L_12977909_12977910;chr2L_12977976_12977977 chr2L_12976932_12977909;chr2L_12977977_12978151 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.86 2.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention vig2 chr3R + chr3R_20950813_20950905 chr3R_20950812_20950813;chr3R_20950905_20950906 chr3R_20950756_20950812;chr3R_20950906_20950919 100.00 100.00 99.73 100.00 99.57 100.00 100.00 100.00 100.00 100.00 99.60 100.00 100.00 100.00 99.75 99.65 100.00 100.00 99.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.67 100.00 99.84 100.00 100.00 100.00 100.00 99.81 99.86 99.82 100.00 99.83 100.00 99.72 100.00 100.00 100.00 100.00 100.00 100.00 99.80 100.00 100.00 100.00 99.71 100.00 99.86 100.00 K cassette CG31997,I_chr4_175592_176390 chr4 - chr4_175592_176390 chr4_175592_175652;chr4_175774_176390 chr4_175653_175773 chr4_175514_175591;chr4_176391_176490 99.51 99.46 98.80 97.77 100.00 100.00 99.59 99.61 99.73 98.21 100.00 99.66 100.00 99.43 99.46 99.66 99.34 99.29 99.51 99.43 99.25 100.00 98.97 99.46 100.00 99.27 100.00 98.97 98.78 100.00 100.00 99.03 100.00 99.64 99.31 98.85 100.00 98.36 100.00 99.58 99.12 99.68 100.00 99.48 100.00 99.56 100.00 100.00 99.66 99.70 99.36 99.33 99.08 99.38 99.51 99.48 98.68 100.00 K intron_retention Patj,CG12022 chr3L + chr3L_1798924_1798981 chr3L_1798923_1798924;chr3L_1798981_1798982 chr3L_1798831_1798923;chr3L_1798982_1800699 73.08 83.33 76.47 74.07 71.43 80.00 68.42 94.12 72.41 NA 57.14 73.08 NA 69.23 73.68 61.11 83.33 50.00 55.00 86.21 50.00 60.87 66.67 73.33 93.75 92.31 87.50 83.33 73.08 64.29 73.33 66.67 63.16 65.00 80.00 94.44 65.00 80.00 57.89 64.00 87.50 80.00 87.50 75.00 75.00 80.00 70.00 70.59 71.43 NA 68.18 69.23 71.43 46.15 78.95 87.50 83.33 63.16 K alternative_acceptor CG3683 chr2R + chr2R_20551970_20552038 chr2R_20551970_20552030 chr2R_20551911_20551969;chr2R_20552039_20552202 100.00 NA 100.00 100.00 100.00 92.86 88.89 88.89 100.00 NA NA 90.00 NA NA 100.00 100.00 100.00 100.00 100.00 93.33 NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA NA 88.89 NA NA NA NA NA NA NA 94.74 NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA 100.00 K intron_retention Mnn1 chr2L + chr2L_7057675_7057863 chr2L_7057674_7057675;chr2L_7057863_7057864 chr2L_7057348_7057674;chr2L_7057864_7058325 0.00 NA NA NA NA NA NA 0.00 5.26 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 18.75 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA K intron_retention l(1)G0269,I_chrX_21192541_21192931 chrX - chrX_21192541_21192663 chrX_21192540_21192541;chrX_21192663_21192664 chrX_21192441_21192540;chrX_21192664_21192846 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 2.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 1.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD shep,I_chr3L_5157070_5160067,RI_chr3L_5163541_5194164,I_chr3L_5177084_5177314,I_chr3L_5193467_5212049 chr3L - chr3L_5157076_5160067 chr3L_5157076_5160034 chr3L_5156934_5157075;chr3L_5160068_5160159 98.17 98.86 100.00 97.14 95.19 96.84 95.80 98.31 97.28 98.67 98.20 98.19 99.04 98.06 97.39 97.06 98.02 99.02 94.31 99.39 95.19 97.92 97.41 99.02 98.63 97.39 99.19 100.00 98.63 100.00 99.00 100.00 96.84 98.71 98.67 97.26 99.14 100.00 97.53 96.62 95.56 97.84 100.00 98.77 97.96 92.86 100.00 NA 98.13 100.00 96.52 96.97 98.15 100.00 100.00 98.15 98.46 92.21 K intron_retention CG31012,I_chr3R_26643930_26646602 chr3R + chr3R_26650056_26650114 chr3R_26650055_26650056;chr3R_26650114_26650115 chr3R_26650000_26650055;chr3R_26650115_26650608 100.00 100.00 100.00 100.00 99.15 99.34 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.26 100.00 100.00 100.00 100.00 99.46 100.00 100.00 99.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.64 100.00 100.00 100.00 99.62 100.00 99.72 99.74 100.00 99.76 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.59 99.64 100.00 100.00 100.00 100.00 100.00 100.00 99.64 K intron_retention CG1494 chrX + chrX_21160203_21160429 chrX_21160202_21160203;chrX_21160429_21160430 chrX_21159750_21160202;chrX_21160430_21160770 2.04 0.00 4.00 10.61 1.89 3.64 1.37 7.41 5.45 0.00 7.89 4.65 4.17 9.76 3.39 8.33 0.00 0.00 8.51 2.44 2.08 12.50 5.06 4.00 0.00 0.00 1.98 0.00 6.25 6.00 2.22 0.00 0.00 2.70 0.00 4.88 3.70 5.77 2.75 1.59 0.00 2.04 0.00 1.32 0.00 0.00 0.00 0.00 2.25 0.00 6.35 4.44 0.00 0.00 1.69 0.00 0.00 0.00 K intron_retention CG6686 chr2L - chr2L_11987388_11987471 chr2L_11987387_11987388;chr2L_11987471_11987472 chr2L_11986438_11987387;chr2L_11987472_11987482 13.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 18.75 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA K intron_retention Rcd5 chr3L + chr3L_4040904_4040966 chr3L_4040903_4040904;chr3L_4040966_4040967 chr3L_4040501_4040903;chr3L_4040967_4041105 0.00 0.00 6.38 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 1.35 3.03 0.00 4.08 2.38 5.56 6.25 14.58 0.00 3.85 0.00 2.38 4.23 0.00 0.00 0.00 0.00 0.00 3.57 5.88 2.38 5.71 0.00 0.00 1.56 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 K intron_retention CG7376 chr3L + chr3L_6168755_6168819 chr3L_6168754_6168755;chr3L_6168819_6168820 chr3L_6167603_6168754;chr3L_6168820_6169535 0.00 NA NA NA NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA 5.88 0.00 NA NA NA 3.85 NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention CG3835,I_chrX_2036036_2037024 chrX + chrX_2038254_2038319 chrX_2038253_2038254;chrX_2038319_2038320 chrX_2037560_2038253;chrX_2038320_2038941 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD aru,I_chr2L_862259_862314,I_chr2L_864795_867505 chr2L - chr2L_862259_862318 chr2L_862259_862314 chr2L_862159_862258;chr2L_862319_862414 1.86 0.00 1.35 1.19 0.67 2.31 0.00 1.02 0.92 0.85 1.40 1.94 1.59 0.65 1.38 2.75 3.33 1.35 2.79 1.86 3.20 2.05 0.77 1.92 0.52 2.88 2.45 3.61 1.97 2.49 1.14 2.87 1.23 0.63 2.73 0.50 1.53 1.65 2.37 2.35 1.10 2.08 3.33 3.23 2.15 1.96 0.57 1.57 1.74 3.14 1.19 2.00 4.03 2.33 0.83 1.49 1.89 2.88 K jcn_only_AD CG11984,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4837672_4837772 chr3R_4837672_4837766 chr3R_4837396_4837671;chr3R_4837773_4837866 97.22 96.81 98.51 96.71 95.86 97.16 96.21 98.53 97.75 98.34 95.19 97.77 96.34 100.00 94.83 97.53 97.06 96.94 97.47 96.99 98.77 97.57 95.39 97.54 97.55 97.62 97.22 94.74 98.28 96.89 96.51 97.58 97.80 96.27 99.33 97.53 97.14 96.62 96.59 97.68 98.78 96.90 97.70 95.60 95.64 98.06 98.48 97.03 96.60 98.00 97.56 95.54 96.30 96.69 97.79 95.91 98.00 97.85 K jcn_only_AD Anxb11,I_chrX_16314152_16314405,I_chrX_16314152_16315813 chrX - chrX_16314152_16316028;chrX_16314152_16316199 chrX_16314152_16316276 chrX_16314083_16314151;chrX_16316277_16316298 11.28 NA NA NA NA NA 14.29 13.04 9.09 NA NA 9.52 NA NA NA NA NA NA NA NA NA 15.38 NA NA NA NA NA NA NA NA 13.04 NA NA 14.81 NA NA NA NA NA 0.00 NA 8.70 NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA K intron_retention CG7911 chr3R - chr3R_25829880_25830025 chr3R_25829879_25829880;chr3R_25830025_25830026 chr3R_25829712_25829879;chr3R_25830026_25830171 0.00 0.00 0.00 0.27 0.00 0.00 0.35 0.52 0.17 0.44 0.00 0.00 0.00 0.00 0.00 0.34 0.47 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.39 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.36 0.45 0.43 0.00 0.00 0.00 0.44 0.00 0.18 0.18 0.00 K intron_retention CG42299,CG15643,I_chrX_15465519_15465586 chrX - chrX_15465519_15465596 chrX_15465518_15465519;chrX_15465596_15465597 chrX_15465419_15465518;chrX_15465597_15465686 0.00 NA NA NA NA NA 0.00 NA 20.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA 0.00 NA 21.43 7.69 NA NA NA 6.67 NA NA 0.00 NA 0.00 7.41 NA 0.00 NA 11.11 NA NA NA 0.00 6.25 NA NA NA NA NA NA NA NA NA K intron_retention CG5853,RI_chr2L_9942818_9944294,I_chr2L_9944682_9947179 chr2L - chr2L_9942818_9942882 chr2L_9942817_9942818;chr2L_9942882_9942883 chr2L_9942722_9942817;chr2L_9942883_9942920 5.00 0.00 1.85 5.63 0.00 2.00 4.17 0.00 5.56 5.26 2.13 3.28 5.26 4.08 2.99 20.00 0.00 5.88 2.56 5.22 5.08 1.43 10.91 3.57 2.94 0.00 12.50 0.00 0.00 9.80 1.59 14.29 5.97 5.48 5.00 2.90 10.00 6.25 7.27 6.38 0.00 5.68 9.09 3.12 8.57 5.56 11.36 3.70 4.30 17.24 7.27 0.00 7.32 7.41 3.64 13.79 3.45 4.55 K jcn_only_AA sgg,I_chrX_2528059_2528637,I_chrX_2528131_2535622,RI_chrX_2528212_2535830,I_chrX_2528367_2535622,I_chrX_2528472_2535622,I_chrX_2529065_2563945,I_chrX_2536127_2563666,I_chrX_2563342_2563666,I_chrX_2565856_2566099,I_chrX_2566157_2566946 chrX + chrX_2528212_2535830 chrX_2528212_2535622 chrX_2528171_2528211;chrX_2535831_2535930 95.64 NA 86.36 95.83 NA NA 92.00 96.55 100.00 NA NA NA NA 100.00 NA 95.45 NA NA 95.00 95.45 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 92.86 NA NA NA NA NA NA NA NA NA K intron_retention ena chr2R + chr2R_15048921_15048977 chr2R_15048920_15048921;chr2R_15048977_15048978 chr2R_15048699_15048920;chr2R_15048978_15049098 0.00 0.00 0.00 3.30 0.00 0.00 0.00 1.56 0.00 0.00 0.00 1.80 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 6.49 0.00 0.00 0.00 0.00 0.00 0.00 3.17 0.00 0.00 1.30 0.00 1.19 0.00 0.00 2.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4293,RI_chrX_423385_423664,I_chrX_423385_423676 chrX - chrX_423564_423676 chrX_423563_423564;chrX_423676_423677 chrX_423443_423563;chrX_423677_423764 46.15 NA NA 88.89 NA NA 100.00 NA 76.92 NA NA 56.25 NA NA NA NA NA NA NA 36.84 NA 25.00 61.54 63.64 63.64 NA 58.82 53.85 46.15 NA NA NA NA NA NA 46.15 60.00 28.57 43.75 NA NA 43.75 NA NA 41.67 NA 63.64 NA 50.00 NA 35.00 NA 40.00 42.86 NA 44.44 40.00 NA N alternative_acceptor zetaCOP chr3L - chr3L_16664943_16665553 chr3L_16665251_16665553 chr3L_16665554_16665644;chr3L_16664764_16664942 1.04 0.53 0.87 11.58 0.00 0.93 8.88 1.69 2.01 0.98 0.85 1.10 8.49 2.44 0.80 3.18 0.68 0.53 0.43 0.91 0.64 3.85 1.53 1.31 2.73 0.53 1.14 2.13 0.75 1.64 0.47 1.04 0.47 1.62 1.34 4.88 0.81 0.79 0.33 0.69 1.45 1.31 0.50 1.34 1.23 1.30 0.84 1.03 1.39 1.69 0.50 1.98 0.58 0.76 0.00 1.36 1.01 1.22 K alternative_donor CG7530,I_chr3R_10556352_10557136,eff chr3R - chr3R_10556352_10557105;chr3R_10556352_10557148;chr3R_10556352_10557126;chr3R_10556352_10557198 chr3R_10556352_10557130 chr3R_10556252_10556351;chr3R_10557199_10557231 58.33 75.86 54.55 55.88 61.76 70.83 37.04 56.06 62.34 50.00 62.07 64.58 57.14 57.14 50.00 48.08 58.33 50.00 48.72 50.00 55.17 44.44 62.16 56.67 57.89 61.29 42.31 62.50 48.28 68.75 62.16 58.33 62.22 64.29 58.33 28.57 68.57 54.17 55.88 58.23 48.39 60.00 64.52 65.12 58.97 53.03 64.00 58.33 57.32 60.00 61.11 65.00 68.97 57.89 62.50 57.14 65.85 61.76 K jcn_only_AD Hrs,I_chr2L_2740474_2741107 chr2L + chr2L_2740474_2741107 chr2L_2740785_2741107 chr2L_2741108_2741207;chr2L_2740389_2740473 98.63 100.00 100.00 94.84 98.67 98.08 97.46 96.55 99.32 97.92 100.00 100.00 100.00 95.71 98.41 97.87 100.00 100.00 100.00 100.00 100.00 96.46 97.60 95.65 99.19 97.35 99.38 98.94 98.21 96.25 89.09 95.45 100.00 99.26 100.00 98.60 97.93 98.94 98.59 100.00 97.67 98.91 98.51 97.56 100.00 100.00 100.00 100.00 97.33 97.33 98.17 97.37 98.36 99.17 99.18 98.90 98.63 97.50 N alternative_acceptor CG6701,RI_chr2R_9866896_9867532,noncoding_6685 chr2R - chr2R_9866896_9867532 chr2R_9866924_9867532 chr2R_9867533_9867623;chr2R_9866796_9866895 93.33 93.33 93.75 90.91 92.86 92.86 93.62 97.92 95.00 100.00 82.35 95.56 92.00 96.30 93.33 88.89 95.00 94.12 95.83 97.37 93.33 94.44 96.15 91.67 93.75 93.33 87.50 90.91 100.00 92.31 84.21 NA 93.75 90.70 90.00 92.86 80.95 83.33 87.50 92.86 100.00 94.74 94.74 95.24 NA 90.91 100.00 93.33 91.30 NA 89.29 90.91 NA NA 95.24 NA 90.00 91.67 K intron_retention Jupiter,I_chr3R_7417030_7419354,I_chr3R_7417630_7417716,RI_chr3R_7442793_7445425 chr3R - chr3R_7417735_7418088 chr3R_7417734_7417735;chr3R_7418088_7418089 chr3R_7417717_7417734;chr3R_7418089_7418346 91.67 88.89 NA 83.33 NA NA 90.91 100.00 100.00 NA NA 88.24 NA NA NA NA NA NA NA 91.67 NA 78.57 100.00 90.00 88.89 NA 93.33 100.00 NA NA NA 100.00 NA 92.31 90.91 63.64 93.75 88.89 90.91 94.74 84.62 91.67 NA NA 78.57 100.00 100.00 92.31 92.86 92.86 100.00 88.89 NA 90.00 100.00 88.89 100.00 NA K intron_retention RI_chr2R_16552969_16554423,exu chr2R - chr2R_16557637_16557705 chr2R_16557636_16557637;chr2R_16557705_16557706 chr2R_16557484_16557636;chr2R_16557706_16557882 4.17 5.26 0.00 NA NA NA 5.56 7.41 7.69 6.67 0.00 2.86 NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 75.00 4.17 0.00 26.67 NA 25.00 14.29 50.00 NA NA NA 21.43 0.00 NA 54.55 3.33 NA 12.50 10.53 NA 0.00 NA 12.50 0.00 12.50 NA 27.27 5.88 20.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 N intron_retention CG17724,Kdm4B,seq chr2R - chr2R_9066519_9072281 chr2R_9066518_9066519;chr2R_9072281_9072282 chr2R_9063672_9066518;chr2R_9072282_9072680 0.00 0.00 NA 12.50 NA NA 0.00 11.11 19.23 NA NA 7.41 NA NA 0.00 30.77 NA 0.00 0.00 5.56 NA NA 20.00 6.67 NA NA NA NA 5.88 NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA 0.00 NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG5261,I_chr2L_7428611_7428877 chr2L + chr2L_7428611_7428925 chr2L_7428611_7428877 chr2L_7428511_7428610;chr2L_7428926_7428977 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 93.75 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 96.97 100.00 100.00 95.00 96.97 100.00 100.00 100.00 100.00 95.83 100.00 100.00 K alternative_acceptor CG2701,RI_chrX_2612780_2612845,ttm50 chrX - chrX_2612780_2612845 chrX_2612784_2612845 chrX_2612846_2612945;chrX_2612680_2612779 94.59 92.86 92.31 96.77 91.67 93.33 100.00 96.67 96.77 91.67 100.00 91.43 90.91 100.00 100.00 89.29 100.00 100.00 94.74 100.00 93.75 93.02 91.49 97.14 90.48 81.82 95.12 94.59 96.67 92.31 84.78 96.67 92.86 92.31 90.48 89.66 95.12 81.48 93.33 95.45 88.46 95.00 100.00 97.06 97.44 93.33 97.44 89.19 96.88 95.56 97.44 95.00 87.50 97.30 88.89 93.94 94.34 94.87 K alternative_acceptor Dsp1,I_chrX_16228447_16229355,I_chrX_16231287_16231413 chrX + chrX_16228447_16230320;chrX_16228447_16230299 chrX_16228447_16230323 chrX_16228347_16228446;chrX_16230324_16230776 15.38 15.15 28.26 19.67 16.00 15.00 10.53 21.05 21.43 17.65 21.21 14.12 20.00 14.89 7.32 7.25 12.12 20.51 24.53 12.84 16.67 7.32 6.78 18.18 10.00 13.33 6.38 11.11 8.00 20.00 19.51 8.70 16.00 15.07 10.34 18.42 20.37 24.44 18.75 21.31 21.43 16.88 8.89 15.38 26.67 12.12 15.15 18.75 16.09 9.09 23.44 13.16 20.69 14.81 9.30 14.29 11.76 21.43 K alternative_acceptor CG6838,I_chr3L_22709306_22709668 chr3L - chr3L_22709303_22709397 chr3L_22709306_22709397 chr3L_22709398_22709514;chr3L_22709206_22709302 7.83 8.57 5.75 12.87 7.27 12.73 6.94 7.87 6.56 12.16 9.62 9.82 7.02 5.56 8.00 5.68 7.27 9.62 3.08 5.43 5.88 11.11 8.25 8.60 9.84 8.51 7.06 9.33 8.26 8.14 6.67 5.00 12.24 8.57 11.54 5.36 5.51 6.33 8.20 10.19 11.27 6.35 5.56 8.16 7.50 11.11 7.25 5.61 7.44 9.41 7.32 5.17 11.29 12.90 7.79 6.90 7.83 5.00 K alternative_acceptor Dif,I_chr2L_17414333_17414528,I_chr2L_17418395_17418487 chr2L - chr2L_17418375_17418487 chr2L_17418395_17418487 chr2L_17418488_17418555;chr2L_17418295_17418374 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 1.06 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon Psi,I_chr2R_12751549_12752073,I_chr2R_12753387_12753659 chr2R - chr2R_12751557_12752073,chr2R_12751549_12752073;chr2R_12749115_12752073 chr2R_12751609_12752073 chr2R_12748962_12749114 chr2R_12749604_12751608 chr2R_12752074_12752173 63.64 71.43 61.11 62.22 46.15 75.00 83.87 60.87 77.50 55.56 40.00 57.14 63.64 72.73 50.00 72.97 50.00 57.14 63.64 51.28 46.15 75.00 78.95 66.67 81.82 56.25 64.71 66.67 58.82 52.17 52.63 47.37 40.62 64.10 66.67 35.14 72.73 60.00 66.67 75.00 63.16 67.57 52.63 70.59 63.64 48.72 83.33 53.12 68.42 76.47 71.43 81.82 75.00 69.23 50.00 50.00 80.00 58.14 K jcn_only_AD Npc1a chr2L - chr2L_10217181_10217352 chr2L_10217181_10217340 chr2L_10216861_10217180;chr2L_10217353_10217533 42.86 33.33 41.18 45.24 34.69 40.74 29.06 44.55 40.69 24.39 34.48 41.18 37.14 46.67 35.29 52.75 40.74 52.63 37.21 44.23 42.86 33.00 46.05 43.33 48.48 46.00 51.92 NA 38.03 30.00 39.51 47.62 50.00 52.69 56.41 53.66 40.48 50.00 56.67 42.55 38.71 41.44 39.47 49.44 33.33 37.14 45.45 45.12 48.60 48.15 43.24 39.06 57.14 NA 48.75 37.84 32.56 48.21 K intron_retention p47,Aldh-III,I_chr2R_3356541_3356614,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3353983_3354073 chr2R_3353982_3353983;chr2R_3354073_3354074 chr2R_3353768_3353982;chr2R_3354074_3354180 1.12 0.65 0.64 2.56 0.00 0.73 2.27 0.00 1.40 0.75 4.17 1.28 0.00 1.52 0.00 0.00 1.74 0.00 0.00 1.06 0.67 2.02 1.66 1.47 3.06 4.00 5.26 2.45 3.55 1.06 8.61 0.69 1.68 1.41 0.89 0.72 1.07 0.65 1.16 1.80 8.64 1.52 0.00 2.60 0.80 0.98 0.88 4.67 1.12 2.02 1.41 0.00 0.97 0.53 1.14 0.72 1.14 0.88 K alternative_acceptor CG10948 chr3L - chr3L_12838769_12838833 chr3L_12838786_12838833 chr3L_12838834_12838953;chr3L_12838157_12838768 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG10981 chr3R + chr3R_1650698_1650754;chr3R_1650698_1650778 chr3R_1650698_1650757 chr3R_1650443_1650697;chr3R_1650779_1651166 47.83 33.33 53.85 55.00 NA 45.45 56.25 50.00 48.00 NA NA 47.83 35.71 33.33 45.45 54.17 63.64 33.33 37.50 46.15 50.00 40.00 52.38 47.06 41.67 35.71 47.62 37.50 40.00 40.00 55.56 25.00 33.33 53.33 46.15 41.67 NA 42.86 50.00 50.00 NA 50.00 NA 62.50 NA 50.00 53.85 16.67 46.15 57.89 50.00 NA 64.71 35.71 50.00 53.85 65.00 55.56 K jcn_only_AD Spc25,Cyp304a1 chr3R + chr3R_8787965_8788438 chr3R_8787977_8788438 chr3R_8788439_8788970;chr3R_8787748_8787964 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9104,CG9099 chrX - chrX_16778035_16778096 chrX_16778034_16778035;chrX_16778096_16778097 chrX_16777528_16778034;chrX_16778097_16778358 6.90 3.12 12.12 9.76 0.00 0.00 16.22 2.22 8.57 8.33 10.53 1.72 5.56 13.04 0.00 2.44 5.56 0.00 2.38 2.35 9.38 24.32 13.64 8.51 12.90 8.33 7.27 15.38 17.14 2.13 17.50 4.88 8.47 9.26 0.00 7.50 7.81 6.38 5.66 4.11 10.26 7.27 0.00 9.52 11.11 6.90 9.09 6.56 13.79 2.78 0.00 6.45 3.03 5.26 2.33 4.17 9.68 5.17 K intron_retention Psf3 chrX - chrX_10278916_10278983 chrX_10278915_10278916;chrX_10278983_10278984 chrX_10278849_10278915;chrX_10278984_10279044 17.24 21.05 NA 16.67 12.50 14.29 31.58 22.73 17.24 10.53 NA 20.00 NA NA 18.18 23.53 38.46 17.39 17.65 21.21 7.14 14.29 15.38 26.09 12.50 NA 20.00 12.50 16.67 17.65 10.00 17.24 20.00 15.38 18.75 4.35 18.18 22.73 20.00 17.02 10.34 12.50 7.69 15.38 28.12 16.28 27.78 9.68 16.00 22.22 20.00 NA 9.09 10.53 21.74 10.00 9.09 18.18 K intron_retention crol,I_chr2L_11799403_11802904 chr2L - chr2L_11803899_11809125 chr2L_11803898_11803899;chr2L_11809125_11809126 chr2L_11803785_11803898;chr2L_11809126_11809399 0.00 NA NA 2.82 0.00 0.00 2.56 4.17 8.11 0.00 0.00 9.09 5.00 0.00 11.76 0.00 NA 0.00 0.00 14.29 0.00 9.09 0.00 NA 0.00 0.00 0.00 9.52 4.62 0.00 NA NA 4.44 0.00 NA 0.00 5.26 NA 9.09 0.00 0.00 0.00 0.00 0.00 NA 10.00 NA 0.00 0.00 NA 0.00 NA NA NA 5.56 NA NA 0.00 K alternative_donor osa,I_chr3R_13542657_13542834,I_chr3R_13542657_13543500,I_chr3R_13542657_13543662,I_chr3R_13542657_13543668,I_chr3R_13543730_13543786 chr3R - chr3R_13542657_13543968;chr3R_13542657_13543500;chr3R_13542657_13543662;chr3R_13542657_13542834;chr3R_13542657_13543668 chr3R_13542657_13543677 chr3R_13542557_13542656;chr3R_13543969_13544017 80.99 76.27 84.48 72.90 82.35 77.42 78.79 77.27 80.13 71.70 92.73 78.03 72.86 82.61 82.35 85.15 73.61 81.82 83.33 79.02 77.97 75.56 75.44 79.17 79.25 73.68 70.37 80.85 79.59 75.00 84.75 89.47 88.04 82.11 84.91 75.00 72.53 83.02 74.03 80.30 79.17 82.11 86.67 82.43 84.00 90.00 83.33 85.71 80.99 82.86 76.60 85.19 93.55 58.82 83.95 85.19 89.47 84.21 K intron_retention CG14322 chr3R + chr3R_13494463_13494525 chr3R_13494462_13494463;chr3R_13494525_13494526 chr3R_13494205_13494462;chr3R_13494526_13494717 0.00 NA NA 16.67 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 4.35 NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA K alternative_donor Vap-33-1 chrX + chrX_3843210_3843513;chrX_3843099_3843513;chrX_3843406_3843513;chrX_3843214_3843513 chrX_3843206_3843513 chrX_3843514_3843746;chrX_3843030_3843098 0.00 0.00 0.00 2.41 0.00 4.65 0.00 1.02 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.51 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.71 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD BicD,Aac11,I_chr2L_17475843_17475910 chr2L - chr2L_17475355_17475534 chr2L_17475355_17475407 chr2L_17474918_17475354;chr2L_17475535_17475615 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 K jcn_only_AA coro,I_chr2R_2754447_2755071 chr2R - chr2R_2751039_2751782 chr2R_2751060_2751782 chr2R_2751783_2752076;chr2R_2750853_2751038 1.65 2.65 2.72 1.68 2.86 1.20 1.70 1.92 1.00 0.00 0.85 2.08 2.48 0.00 1.59 1.21 2.02 2.19 0.68 2.49 2.14 3.30 1.20 1.24 1.80 0.79 1.52 0.75 1.35 2.70 1.05 2.54 5.00 1.65 1.71 1.18 2.11 2.03 1.94 2.28 4.65 3.56 2.73 1.20 1.04 1.35 0.96 1.65 1.64 1.35 1.69 0.74 0.73 1.48 0.50 1.50 1.74 0.00 K jcn_only_AD regucalcin,I_chrX_11910759_11910811 chrX + chrX_11906562_11910035 chrX_11906584_11910035 chrX_11910036_11910754;chrX_11906467_11906561 0.00 NA 0.00 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 3.85 NA NA NA 4.55 NA NA 0.00 0.00 NA K intron_retention CG42507,Trl,EI_chr3L_14750431_14750893,I_chr3L_14750431_14750985,CI_chr3L_14750431_14753667,I_chr3L_14754175_14754238 chr3L - chr3L_14750431_14750583 chr3L_14750430_14750431;chr3L_14750583_14750584 chr3L_14750331_14750430;chr3L_14750584_14750733 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 18.75 14.29 NA NA NA NA NA 30.77 NA 31.25 NA NA NA 7.14 NA 8.70 NA NA NA NA NA NA NA NA NA 14.29 K intron_retention CG11009,I_chr3L_12844823_12845526,I_chr3L_12845441_12845526 chr3L + chr3L_12844823_12845715 chr3L_12844822_12844823;chr3L_12845715_12845716 chr3L_12844723_12844822;chr3L_12845716_12845816 2.20 1.82 2.33 16.00 0.00 0.00 2.08 5.26 5.13 3.57 0.00 6.35 9.52 0.00 1.37 0.00 2.44 0.00 2.70 4.04 0.00 1.54 2.35 3.08 0.00 0.00 2.90 8.00 0.00 3.08 2.08 0.00 6.90 4.11 2.27 0.00 2.90 0.00 0.00 0.91 2.50 5.88 0.00 2.35 0.00 2.20 4.29 5.26 5.38 2.41 1.33 1.59 3.45 0.00 6.15 0.00 1.54 0.98 K intron_retention Fmr1,I_chr3R_5930712_5930781,I_chr3R_5934794_5935245,I_chr3R_5934801_5935537 chr3R - chr3R_5930733_5930781 chr3R_5930732_5930733;chr3R_5930781_5930782 chr3R_5930601_5930732;chr3R_5930782_5930881 7.21 0.00 0.00 7.32 0.00 0.00 2.56 8.89 8.47 10.00 0.00 15.56 4.76 9.09 18.18 3.70 0.00 0.00 2.56 7.27 0.00 0.00 11.63 0.00 7.14 8.33 38.89 16.67 8.89 0.00 3.23 19.05 6.78 9.09 0.00 40.91 8.77 0.00 5.71 10.17 14.29 0.00 NA 11.11 8.70 12.12 0.00 8.82 5.41 11.76 10.53 6.67 14.29 NA 0.00 NA 0.00 12.00 K intron_retention sut1,I_chr2R_3970908_3972035,sut2 chr2R + chr2R_3970891_3972035 chr2R_3970890_3970891;chr2R_3972035_3972036 chr2R_3970808_3970890;chr2R_3972036_3972135 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention chr2R_6973810_6974365.0,noncoding_5956 chr2R + chr2R_6973463_6975382 chr2R_6973462_6973463;chr2R_6975382_6975383 chr2R_6973091_6973462;chr2R_6975383_6975805 97.92 95.24 87.50 100.00 93.75 100.00 94.74 97.92 93.62 NA 100.00 100.00 100.00 95.83 93.75 96.15 92.86 100.00 100.00 83.87 100.00 NA 100.00 NA 90.00 92.31 100.00 NA NA 100.00 92.86 NA NA 96.67 100.00 NA NA NA 87.50 95.65 NA 96.67 95.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 88.89 NA NA K cassette CG17508 chr2R + chr2R_1496995_1498696 chr2R_1496995_1497637;chr2R_1497762_1498696 chr2R_1497638_1497761 chr2R_1496895_1496994;chr2R_1498697_1499080 82.93 75.51 80.95 82.46 82.35 75.00 88.46 85.00 81.61 93.33 100.00 86.76 88.24 90.00 86.36 81.82 90.48 84.62 83.93 84.34 94.29 58.33 82.05 85.42 80.95 70.21 82.22 94.12 65.22 85.19 83.72 80.00 73.53 87.01 77.42 57.14 84.09 77.50 78.12 85.71 81.82 80.00 82.93 83.33 67.65 86.49 83.72 92.59 83.33 81.82 80.85 85.29 75.00 88.00 80.33 87.80 77.42 80.00 K jcn_only_AD CG31038,I_chr3R_25702915_25703648,I_chr3R_25705533_25722419,I_chr3R_25727788_25727905 chr3R + chr3R_25702915_25703648;chr3R_25702989_25703648;chr3R_25702895_25703648;chr3R_25702897_25703648;chr3R_25702901_25703648;chr3R_25702970_25703648 chr3R_25702838_25703648 chr3R_25703649_25703748;chr3R_25702831_25702837 9.52 NA NA NA NA NA NA NA 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 18.18 NA NA NA NA 9.52 NA NA NA NA NA NA NA NA NA K alternative_donor Rab-RP4,RI_chrX_5565547_5565601 chrX - chrX_5565547_5565635 chrX_5565547_5565601 chrX_5565447_5565546;chrX_5565636_5565701 0.70 0.00 0.93 1.80 1.49 1.09 0.00 0.00 2.23 0.00 0.00 0.00 1.09 1.06 0.00 0.00 0.00 0.00 0.98 0.44 0.00 1.75 0.79 1.40 2.06 0.95 0.70 0.00 1.45 0.74 1.74 1.60 1.61 0.00 1.98 0.80 0.99 0.00 1.82 0.33 1.71 0.00 0.00 1.82 1.20 0.97 0.52 0.40 0.00 0.00 1.42 0.00 0.00 0.85 0.00 0.00 0.00 0.37 K jcn_only_AD sick chr2L + chr2L_19887321_19907761 chr2L_19902188_19907761 chr2L_19907762_19907892 3.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Anxb11,I_chrX_16314152_16314405,I_chrX_16314152_16315813 chrX - chrX_16314152_16316028;chrX_16314152_16316276 chrX_16314152_16316199 chrX_16314083_16314151;chrX_16316277_16316298 65.94 NA NA NA NA NA 47.62 65.22 57.58 NA NA 52.38 NA NA NA NA NA NA NA NA NA 84.62 NA NA NA NA NA NA NA NA 73.91 NA NA 62.96 NA NA NA NA NA 66.67 NA 69.57 NA NA NA NA NA NA 76.67 NA NA NA NA NA NA NA NA NA K multi_cassette RI_chrX_11473566_11473702,roX2,noncoding_23149,I_chrX_11475074_11475402 chrX + chrX_11473158_11473702 chrX_11473158_11473247;chrX_11473270_11473384;chrX_11473433_11473485;chrX_11473562_11473702 chrX_11473248_11473269;chrX_11473385_11473432;chrX_11473486_11473561 chrX_11473148_11473157;chrX_11473703_11473726 18.77 22.22 20.00 10.53 NA NA NA 20.00 22.73 10.00 NA 19.35 42.86 18.18 13.33 12.90 33.33 NA 11.76 15.79 NA NA NA NA NA 33.33 NA NA NA NA 14.29 22.22 NA 14.81 NA NA NA NA NA 10.34 NA 26.32 14.29 NA NA 28.57 20.00 6.67 15.62 NA NA 33.33 NA NA 15.00 33.33 30.00 15.79 K intron_retention CG3764 chr3L - chr3L_16991558_16991624 chr3L_16991557_16991558;chr3L_16991624_16991625 chr3L_16991370_16991557;chr3L_16991625_16992647 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 4.76 0.00 7.41 0.00 2.04 11.11 3.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.98 3.23 0.00 1.41 0.00 0.00 0.00 0.00 0.00 NA 0.00 K jcn_only_AA RpL12,I_chr2R_19948517_19948655,RI_chr2R_19948517_19948677,I_chr2R_19948517_19948682 chr2R + chr2R_19948517_19948672;chr2R_19948517_19948677;chr2R_19948517_19948655 chr2R_19948517_19948682 chr2R_19948417_19948516;chr2R_19948683_19948755 0.02 0.02 0.00 0.00 0.02 0.03 0.01 0.01 0.00 0.03 0.02 0.02 0.00 0.00 0.01 0.01 0.00 0.03 0.04 0.01 0.00 0.00 0.08 0.03 0.03 0.00 0.01 0.02 0.11 0.04 0.08 0.04 0.00 0.04 0.08 0.02 0.05 0.02 0.02 0.00 0.02 0.02 0.02 0.00 0.09 0.08 0.02 0.06 0.02 0.02 0.00 0.02 0.01 0.03 0.03 0.02 0.06 0.03 K intron_retention sbr,RI_chrX_10731248_10731484 chrX - chrX_10730663_10730725 chrX_10730662_10730663;chrX_10730725_10730726 chrX_10730553_10730662;chrX_10730726_10731247 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 2.20 0.00 1.03 0.00 1.32 0.00 0.00 0.00 0.00 1.54 0.00 0.00 2.38 K intron_retention Papss chr3L + chr3L_19838529_19838611 chr3L_19838528_19838529;chr3L_19838611_19838612 chr3L_19838397_19838528;chr3L_19838612_19838730 46.15 69.23 55.56 78.26 NA NA 63.16 47.83 50.00 NA 88.89 50.00 NA 60.00 50.00 60.00 NA 38.46 46.15 50.00 NA 31.58 50.00 43.75 46.15 71.43 90.91 NA 54.55 33.33 43.75 NA 23.81 42.86 NA 80.00 40.00 33.33 41.18 36.36 NA 59.26 41.67 NA NA 29.41 53.85 36.36 45.83 NA 35.29 36.36 NA NA 56.25 46.15 46.15 29.03 K intron_retention CG8213 chr2R - chr2R_4858557_4858929 chr2R_4858556_4858557;chr2R_4858929_4858930 chr2R_4858370_4858556;chr2R_4858930_4862949 13.34 NA NA 53.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA 11.76 10.53 12.50 NA NA 14.29 NA 13.64 13.04 NA NA NA NA NA 37.50 6.67 NA NA 17.65 18.75 20.00 NA 12.50 7.14 14.29 28.57 11.76 NA NA 7.14 NA NA 12.50 NA 20.00 NA 25.00 K alternative_acceptor ade5,I_chrX_12653069_12653157 chrX - chrX_12653946_12654381 chrX_12653949_12654381 chrX_12654382_12654426;chrX_12653745_12653945 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG7611,I_chr3L_21516702_21517821 chr3L + chr3L_21516706_21517821;chr3L_21516330_21517821;chr3L_21516399_21517821;chr3L_21517168_21517821;chr3L_21516722_21517821;chr3L_21516918_21517821;chr3L_21516343_21517821;chr3L_21516728_21517821 chr3L_21516501_21517821 chr3L_21517822_21517920;chr3L_21516311_21516329 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8671,I_chr2L_21275807_21277205 chr2L + chr2L_21263124_21263647 chr2L_21263123_21263124;chr2L_21263647_21263648 chr2L_21262988_21263123;chr2L_21263648_21263786 16.52 4.35 18.37 14.81 28.57 11.90 22.22 15.46 17.74 NA 7.41 15.22 17.65 15.69 16.33 18.28 20.83 14.29 16.36 16.90 0.00 29.17 19.51 19.05 24.00 29.17 16.22 33.33 33.33 15.38 16.13 16.67 37.93 13.75 21.21 15.62 NA 33.33 16.67 13.79 40.00 18.29 15.00 16.13 NA 12.12 NA 17.95 18.75 10.53 16.67 9.09 NA 15.38 10.94 13.04 11.76 24.00 K jcn_only_AD CG10602 chr2L - chr2L_18857404_18857587;chr2L_18857404_18857541 chr2L_18857404_18857511 chr2L_18857177_18857403;chr2L_18857588_18857700 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.94 0.00 NA 0.00 2.33 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 N cassette sba chr3R - chr3R_19725516_19739517 chr3R_19725516_19728849;chr3R_19729184_19739517 chr3R_19728850_19729183 chr3R_19725509_19725515;chr3R_19739518_19739641 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 73.81 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19566012_19566069 chr2R_19566011_19566012;chr2R_19566069_19566070 chr2R_19565741_19566011;chr2R_19566070_19567273 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL5,I_chr2L_22428750_22428846 chr2L - chr2L_22428787_22428846 chr2L_22428786_22428787;chr2L_22428846_22428847 chr2L_22428534_22428786;chr2L_22428847_22428946 0.05 0.04 0.06 0.04 0.05 0.05 0.05 0.04 0.05 0.06 0.04 0.04 0.06 0.08 0.06 0.06 0.06 0.03 0.04 0.05 0.05 0.06 0.06 0.06 0.07 0.04 0.19 0.47 0.16 0.06 0.03 0.06 0.10 0.05 0.05 0.04 0.05 0.06 0.04 0.09 0.06 0.05 0.07 0.07 0.04 0.04 0.04 0.08 0.08 0.05 0.06 0.11 0.05 0.04 0.04 0.04 0.06 0.03 N jcn_only_AA noncoding_14363 chr3LHet - chr3LHet_709127_709194;chr3LHet_709103_709194 chr3LHet_709113_709194 chr3LHet_709195_709261;chr3LHet_709044_709102 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 97.50 100.00 100.00 100.00 NA 100.00 100.00 93.49 100.00 91.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.02 100.00 98.78 100.00 100.00 100.00 100.00 100.00 100.00 99.03 100.00 K alternative_acceptor RI_chr2R_12912984_12913058,RhoGEF2 chr2R + chr2R_12926410_12926473 chr2R_12926410_12926467 chr2R_12926100_12926409;chr2R_12926474_12926605 80.95 85.19 76.92 82.50 85.71 80.00 74.19 78.57 80.39 84.62 92.86 84.31 75.86 78.26 68.57 84.38 75.00 86.67 79.17 79.69 64.00 93.02 77.55 94.12 76.92 85.19 88.89 84.00 84.21 74.29 80.00 94.74 80.43 80.85 95.65 86.49 84.38 74.07 70.73 83.61 86.36 78.72 77.78 91.43 86.21 80.00 76.47 86.54 86.27 70.97 76.09 82.61 91.30 81.25 80.56 76.00 80.95 87.10 K intron_retention CG3077 chr2L - chr2L_2765428_2765495 chr2L_2765427_2765428;chr2L_2765495_2765496 chr2L_2765284_2765427;chr2L_2765496_2765675 0.00 0.00 0.00 3.45 0.00 3.85 6.67 5.13 4.00 4.35 0.00 0.00 NA 0.00 4.17 3.57 0.00 0.00 6.67 3.57 0.00 0.00 0.00 2.17 4.55 9.09 20.00 19.05 0.00 0.00 3.85 6.67 3.45 2.94 0.00 4.35 0.00 0.00 0.00 0.00 4.35 6.78 0.00 0.00 0.00 0.00 0.00 5.71 7.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4847655_4848167;chrX_4847655_4848149 chrX_4847655_4847757 chrX_4847526_4847654;chrX_4848168_4848168 8.33 8.33 5.88 19.05 5.56 11.76 10.71 8.70 14.58 10.00 8.33 17.39 62.50 6.67 5.88 14.29 5.56 14.29 6.67 9.38 0.00 4.35 3.03 9.38 0.00 0.00 0.00 0.00 0.00 3.70 7.41 7.14 13.33 19.35 8.33 5.88 2.63 4.35 3.03 10.00 15.79 14.81 10.00 10.71 5.56 13.04 7.41 18.18 8.70 4.00 6.06 5.00 11.11 0.00 15.38 0.00 11.76 8.70 K intron_retention CkIIalpha-i1 chr3L + chr3L_15810274_15810331 chr3L_15810273_15810274;chr3L_15810331_15810332 chr3L_15810092_15810273;chr3L_15810332_15811721 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG18659,E_chr2R_5011363_5019110,RI_chr2R_5013572_5014531,I_chr2R_5016147_5016997 chr2R - chr2R_5011651_5014531;chr2R_5011651_5014923 chr2R_5011651_5013055;chr2R_5013572_5014531,chr2R_5013572_5014923 chr2R_5013056_5013571 chr2R_5011194_5011650;chr2R_5014924_5015382 99.00 99.11 98.70 91.95 100.00 98.73 97.75 98.84 98.60 100.00 98.25 99.32 100.00 100.00 98.77 100.00 100.00 100.00 100.00 98.28 93.15 89.33 97.67 99.38 99.09 98.33 99.33 98.36 99.29 98.40 100.00 98.85 97.18 99.08 97.96 99.00 98.49 99.25 98.00 99.42 97.35 98.14 98.04 97.17 100.00 99.23 99.22 100.00 99.24 99.25 97.65 98.57 100.00 96.40 98.85 99.15 99.12 99.01 K intron_retention CG5969,noncoding_13793,CG5976 chr3L + chr3L_20467422_20467486 chr3L_20467421_20467422;chr3L_20467486_20467487 chr3L_20467378_20467421;chr3L_20467487_20467743 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Pegarn chr3L + chr3L_12783425_12784534 chr3L_12783424_12783425;chr3L_12784534_12784535 chr3L_12783403_12783424;chr3L_12784535_12784733 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 17.65 NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 46.67 NA 25.00 NA NA NA NA NA NA NA NA NA 40.00 K intron_retention dos,I_chr3L_2589746_2592161 chr3L + chr3L_2594466_2594521 chr3L_2594465_2594466;chr3L_2594521_2594522 chr3L_2593865_2594465;chr3L_2594522_2595590 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG34394,I_chr2L_3365674_3365965,RI_chr2L_3365677_3365965,I_chr2L_3365701_3365757 chr2L - chr2L_3365677_3367244 chr2L_3365676_3365677;chr2L_3367244_3367245 chr2L_3365601_3365676;chr2L_3367245_3367719 36.31 40.00 42.86 43.48 41.67 42.86 42.31 43.64 44.57 24.00 34.21 30.49 33.33 43.24 47.22 38.78 47.50 44.83 34.62 34.72 35.48 50.00 33.33 27.03 37.14 52.78 35.42 52.17 18.52 23.08 41.18 25.00 13.33 40.00 23.68 21.62 28.38 21.05 30.00 34.21 NA 41.77 46.15 23.33 22.22 29.41 39.13 23.08 47.06 42.31 33.33 31.82 15.00 31.82 51.35 42.86 47.62 41.67 K jcn_only_AA RluA-2,I_chr2L_10480906_10481097 chr2L + chr2L_10482575_10482636 chr2L_10482575_10482624 chr2L_10482285_10482574;chr2L_10482637_10482786 26.45 NA NA 21.43 NA NA 48.15 37.93 22.86 NA NA 31.82 NA NA NA NA 33.33 NA NA 36.36 NA NA 11.54 NA NA NA 16.00 NA NA NA 13.51 NA NA 24.00 NA NA NA NA NA 30.00 20.83 13.89 NA 25.81 22.73 31.58 31.43 42.86 24.24 NA NA NA NA NA 33.33 16.67 27.08 35.00 K intron_retention CG1603 chr2R - chr2R_3403088_3403147 chr2R_3403087_3403088;chr2R_3403147_3403148 chr2R_3402725_3403087;chr2R_3403148_3403402 0.00 NA NA 0.00 0.00 NA 0.00 0.00 9.09 NA NA 7.69 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA NA 11.11 NA NA 0.00 NA NA 0.00 4.76 NA 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA 12.50 NA NA NA NA NA 6.25 0.00 0.00 NA K jcn_only_AD CG10737 chr2R + chr2R_15062592_15063752;chr2R_15062754_15063752 chr2R_15062814_15063752 chr2R_15063753_15063852;chr2R_15062387_15062591 63.33 NA NA 45.00 NA NA 82.00 NA 63.33 NA NA NA NA NA NA NA NA NA NA 65.71 NA 46.43 NA NA NA NA NA NA NA NA NA NA 30.77 50.00 NA NA NA NA NA NA NA 68.00 NA NA 73.68 NA NA 55.00 65.38 NA NA NA NA NA NA NA 70.00 62.50 K alternative_donor nimC1,I_chr2L_13975880_13975977 chr2L - chr2L_13975880_13976476 chr2L_13975880_13975977 chr2L_13975780_13975879;chr2L_13976477_13976753 26.67 27.59 28.57 24.32 21.21 25.00 27.03 25.24 25.23 NA 21.82 29.11 30.00 36.36 26.42 38.71 30.56 25.93 37.78 23.23 27.27 22.22 33.33 30.77 25.00 21.21 31.58 36.36 11.11 31.25 36.36 36.36 26.67 30.16 27.27 33.33 21.74 8.33 22.22 33.33 10.00 25.58 35.48 20.00 NA 29.41 20.00 31.25 28.05 21.43 37.50 22.73 NA NA 20.63 23.08 21.43 18.18 K intron_retention I_chr2R_13460029_13460240,Dcr-2,I_chr2R_13466001_13466072 chr2R - chr2R_13467618_13467673 chr2R_13467617_13467618;chr2R_13467673_13467674 chr2R_13466921_13467617;chr2R_13467674_13467980 8.77 7.32 9.09 22.95 17.24 9.09 9.64 7.44 6.96 11.54 4.35 10.28 3.45 12.50 7.79 10.59 4.55 6.12 12.86 7.08 5.13 9.23 8.77 11.63 21.05 15.25 7.69 26.53 7.84 5.13 18.87 NA 14.71 10.75 7.50 21.88 8.00 0.00 5.56 8.79 22.22 9.17 6.67 7.55 NA 6.67 NA 10.39 8.65 NA 10.64 8.33 NA NA 13.51 0.00 0.00 2.70 N alternative_acceptor Rab2,I_chr2R_2584435_2585553 chr2R + chr2R_2585891_2585965 chr2R_2585891_2585950 chr2R_2585554_2585890;chr2R_2585966_2586134 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.26 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG1667,RI_chr2R_5731409_5731653,I_chr2R_5732410_5732504 chr2R + chr2R_5732410_5732504 chr2R_5732410_5732494 chr2R_5732341_5732409;chr2R_5732505_5732561 100.00 96.15 100.00 98.46 100.00 98.31 100.00 100.00 98.69 100.00 100.00 99.07 100.00 100.00 98.75 100.00 98.25 100.00 100.00 98.71 100.00 100.00 98.11 98.39 100.00 98.28 100.00 100.00 98.31 100.00 100.00 100.00 100.00 98.17 100.00 NA 98.59 100.00 100.00 99.12 96.83 100.00 98.31 97.22 97.26 98.80 100.00 98.33 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 98.73 96.43 K jcn_only_AA wun2,I_chr2R_5302867_5303906,I_chr2R_5304606_5304660 chr2R + chr2R_5302867_5304149 chr2R_5302867_5303906 chr2R_5302767_5302866;chr2R_5304150_5304298 2.13 1.52 1.80 0.46 0.00 2.94 1.69 2.15 2.46 0.00 0.86 1.05 4.55 3.82 1.64 2.09 0.00 1.00 2.67 5.98 0.76 1.42 2.35 2.73 1.65 0.00 3.81 0.00 5.56 0.00 7.14 4.44 2.78 2.67 4.44 5.21 2.07 2.13 2.73 2.22 1.98 1.85 1.80 1.48 2.15 2.07 3.70 5.41 1.54 4.92 2.99 1.37 3.85 1.12 2.21 3.09 1.63 4.17 K alternative_donor d4 chr2R + chr2R_1182563_1182620;chr2R_1182573_1182620;chr2R_1182566_1182620 chr2R_1182569_1182620 chr2R_1182621_1183461;chr2R_1182302_1182562 41.03 43.90 32.61 38.81 43.90 34.21 40.98 35.19 36.89 61.11 38.46 52.94 46.67 40.62 37.84 43.64 37.50 48.28 51.61 38.46 44.12 34.69 44.68 47.62 50.00 31.03 45.28 38.46 34.62 40.00 51.72 40.91 41.67 40.00 48.00 41.18 44.64 41.03 46.00 47.69 43.90 40.00 39.29 31.91 46.55 50.00 38.00 54.90 40.00 38.60 43.48 42.86 38.18 46.15 37.50 40.00 37.65 50.00 K intron_retention CG5792,F_chr2L_12714547_12714695 chr2L - chr2L_12718057_12721450 chr2L_12718056_12718057;chr2L_12721450_12721451 chr2L_12717565_12718056;chr2L_12721451_12721525 30.77 NA NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA 31.58 15.79 0.00 NA NA 30.77 NA NA NA NA NA NA 46.15 NA NA NA NA NA NA NA 11.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N alternative_acceptor CG34394,I_chr2L_3365674_3365965,RI_chr2L_3365677_3365965,I_chr2L_3365701_3365757 chr2L - chr2L_3365976_3367244;chr2L_3365677_3367244 chr2L_3365674_3367244 chr2L_3367245_3367719;chr2L_3365601_3365673 39.13 38.10 42.86 29.17 26.67 39.13 33.33 35.14 41.07 38.89 19.05 32.69 38.89 26.32 33.33 36.36 34.78 43.48 43.75 40.82 44.44 27.47 42.42 44.00 48.39 41.18 37.50 35.71 23.53 38.71 47.83 NA 39.13 30.00 41.38 48.28 36.73 34.62 39.22 44.44 NA 48.21 35.71 51.85 36.36 53.85 56.25 61.54 40.62 36.84 47.50 57.89 42.86 33.33 48.00 33.33 40.00 NA K intron_retention Pp1-87B chr3R - chr3R_8249602_8249672 chr3R_8249601_8249602;chr3R_8249672_8249673 chr3R_8249335_8249601;chr3R_8249673_8249908 98.83 100.00 95.05 100.00 100.00 100.00 99.38 98.83 98.28 97.87 98.75 99.07 96.81 97.14 99.09 98.72 98.68 89.71 99.19 97.18 98.51 97.14 99.03 96.43 97.92 100.00 99.16 99.02 99.09 100.00 100.00 97.24 98.06 100.00 100.00 100.00 100.00 97.78 97.92 97.63 98.84 99.33 98.89 99.07 99.31 96.96 98.67 98.58 99.52 98.41 100.00 100.00 98.53 98.61 98.29 95.74 99.12 98.77 K jcn_only_AD Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045251_16046104;chr3L_16045277_16046104;chr3L_16045275_16046104 chr3L_16045316_16046104 chr3L_16046105_16046204;chr3L_16045216_16045250 0.00 0.00 0.00 0.00 2.63 0.00 0.00 1.87 1.67 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 1.20 0.00 1.85 0.00 0.00 0.00 0.00 1.28 0.00 3.33 1.56 0.00 1.35 0.00 0.00 0.00 0.00 0.00 2.38 2.78 0.00 0.00 0.00 0.00 1.64 1.75 0.00 0.00 0.00 0.00 0.91 0.00 1.92 0.00 0.00 NA 0.00 5.56 NA 0.00 K alternative_acceptor SPoCk,I_chr3L_22776339_22776519,I_chr3L_22777865_22778359 chr3L + chr3L_22768238_22770210 chr3L_22768238_22770191 chr3L_22768075_22768237;chr3L_22770211_22771924 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 NA NA K jcn_only_AD None chrU + chrU_1178980_1183262;chrU_1179335_1183262 chrU_1182323_1183262 0.97 2.16 2.14 0.00 0.00 0.00 0.97 0.32 0.86 0.00 0.00 0.72 2.10 0.00 1.57 0.43 1.69 1.82 0.00 0.38 0.00 0.00 1.54 1.53 1.61 0.00 0.76 4.08 0.82 1.98 1.69 0.85 3.28 0.54 6.48 0.00 2.35 2.74 1.03 1.01 1.23 0.27 2.24 1.01 3.60 1.65 1.24 1.56 1.15 0.00 2.05 1.00 0.89 0.00 0.00 0.00 0.00 0.95 K cassette tou,I_chr2R_7468394_7468453,RI_chr2R_7474644_7475275,I_chr2R_7479681_7491857,I_chr2R_7504956_7505020 chr2R - chr2R_7468904_7470519 chr2R_7468904_7469132;chr2R_7469651_7470519 chr2R_7469133_7469650 chr2R_7468454_7468903;chr2R_7470520_7474530 52.94 58.46 56.36 45.30 45.00 56.36 54.41 50.57 58.73 50.00 40.00 56.76 56.67 53.57 54.69 63.24 61.36 59.18 41.77 51.47 50.00 63.82 55.12 62.24 60.66 45.76 53.77 63.77 40.00 50.00 43.48 49.23 51.82 56.18 52.63 50.00 50.60 51.85 51.59 49.04 52.94 54.39 55.10 52.22 45.88 53.85 65.08 38.13 57.76 55.38 62.63 56.60 62.50 52.46 52.17 47.83 52.46 39.74 K jcn_only_AD eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20341925_20342041;chr3L_20341636_20342041;chr3L_20341865_20342041;chr3L_20341486_20342041;chr3L_20341522_20342041;chr3L_20341751_20342041;chr3L_20341530_20342041;chr3L_20341629_20342041;chr3L_20341598_20342041;chr3L_20341759_20342041 chr3L_20341509_20342041 chr3L_20342042_20342306;chr3L_20341482_20341485 4.35 3.03 3.33 4.59 6.67 9.30 1.23 5.74 9.86 4.35 6.98 1.33 7.14 5.26 1.43 10.26 4.62 5.88 4.76 7.09 0.00 8.70 2.63 6.12 2.44 5.71 6.45 7.41 0.00 7.41 1.15 4.55 2.44 9.16 NA 0.00 4.08 5.56 3.45 2.54 0.00 6.45 5.26 0.00 5.41 2.22 0.00 7.50 8.39 2.13 0.00 2.50 0.00 NA 3.06 3.33 0.00 2.47 K alternative_acceptor rdgA chrX + chrX_8914065_8914914 chrX_8914065_8914899 chrX_8913982_8914064;chrX_8914915_8915324 6.67 NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA 0.00 7.69 NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA K jcn_only_AA CG9992 chrX - chrX_16277545_16278620;chrX_16277559_16278620 chrX_16277201_16278620 chrX_16278621_16278914 31.63 40.00 35.09 63.30 33.33 33.33 55.24 31.62 31.46 NA 34.43 43.12 53.75 35.71 40.62 26.21 38.57 7.89 31.65 29.86 38.33 52.08 25.30 32.35 47.22 38.98 25.00 16.28 51.61 27.78 31.25 33.33 NA 26.17 29.73 59.52 38.36 29.73 30.00 19.61 27.27 32.52 38.81 22.97 26.09 24.24 18.00 NA 27.83 28.99 25.00 20.34 33.33 33.33 25.76 23.40 28.89 32.35 K jcn_only_AD foi,I_chr3L_8520658_8520733,I_chr3L_8524905_8524976 chr3L + chr3L_8518753_8523659;chr3L_8518805_8523659 chr3L_8518490_8523659 chr3L_8523660_8524249;chr3L_8518407_8518489 7.06 3.53 8.16 8.45 4.71 6.59 1.56 4.46 4.05 12.20 7.69 0.96 3.33 3.96 6.45 4.14 7.07 3.15 4.26 5.70 5.26 11.11 9.72 7.84 12.33 0.89 4.44 11.76 23.38 8.70 5.97 7.50 13.04 6.33 6.76 8.65 12.50 4.65 4.08 8.87 11.96 4.44 7.06 10.91 14.08 8.99 18.42 8.67 2.28 11.29 4.88 3.85 7.50 15.00 5.30 6.58 11.27 8.63 K mutually_exclusive ens,I_chr3L_4130719_4131120 chr3L - chr3L_4127163_4129650,chr3L_4129792_4131120;chr3L_4127163_4130388,chr3L_4130644_4131120 chr3L_4127163_4128613,chr3L_4128974_4131120 chr3L_4129651_4129791;chr3L_4130389_4130643 chr3L_4128614_4128973 chr3L_4126989_4127162;chr3L_4131121_4131220 0.88 0.97 1.11 0.00 1.23 1.08 0.00 0.00 0.55 1.39 0.00 0.67 0.00 0.00 1.08 1.64 0.00 1.67 0.00 0.00 0.00 0.65 0.64 1.63 0.00 0.00 0.83 2.11 3.92 0.87 0.88 1.64 1.50 0.68 1.96 0.80 0.56 1.57 2.08 0.52 6.02 1.02 1.39 0.74 3.26 2.30 2.47 0.69 0.70 0.00 0.65 1.05 1.49 1.82 0.00 1.20 2.17 1.33 K alternative_acceptor Rcd6,I_chr2R_16518342_16520460,I_chr2R_16518620_16518916,RI_chr2R_16520388_16520855 chr2R - chr2R_16518342_16520294 chr2R_16518620_16520294 chr2R_16520295_16520328;chr2R_16518242_16518341 100.00 NA NA 85.71 100.00 NA 100.00 90.00 100.00 100.00 NA 85.71 87.50 NA 85.71 85.71 NA 100.00 100.00 83.33 NA 100.00 88.89 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 100.00 88.89 100.00 85.71 100.00 83.33 NA 85.71 100.00 NA 100.00 NA 100.00 100.00 100.00 80.00 87.50 87.50 NA 100.00 80.00 NA NA 100.00 83.33 NA 85.71 K jcn_only_AD CG2003 chr3R + chr3R_27812832_27814973;chr3R_27812850_27814973 chr3R_27812907_27814973 chr3R_27814974_27815051;chr3R_27812763_27812831 0.00 2.00 3.85 0.00 0.00 0.00 0.00 1.74 1.35 NA 2.70 1.09 0.00 3.57 8.93 2.70 0.00 0.00 0.00 1.43 5.56 NA 0.00 2.44 4.55 2.17 0.00 NA NA 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 1.85 4.65 1.87 4.55 2.50 0.00 1.69 0.00 2.44 0.69 0.00 0.00 0.00 0.00 NA 1.54 0.00 0.00 0.00 K alternative_acceptor CG7145,I_chr3L_21832928_21833150,I_chr3L_21832932_21833106 chr3L - chr3L_21832928_21833150 chr3L_21832932_21833150 chr3L_21833151_21833168;chr3L_21832832_21832927 100.00 100.00 100.00 90.91 NA 100.00 100.00 93.33 95.00 NA 87.50 100.00 90.00 100.00 85.71 100.00 100.00 100.00 90.00 96.67 100.00 NA 100.00 NA NA 90.91 NA NA 100.00 NA 100.00 NA 100.00 93.33 NA NA 100.00 NA NA 100.00 100.00 100.00 NA 100.00 NA 100.00 NA 91.67 100.00 NA 100.00 NA NA NA 100.00 NA NA 100.00 K intron_retention CG7028,I_chr3L_207277_208117 chr3L - chr3L_210400_210453 chr3L_210399_210400;chr3L_210453_210454 chr3L_209784_210399;chr3L_210454_210738 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 98.21 100.00 93.33 97.50 96.15 100.00 97.06 100.00 100.00 94.74 100.00 100.00 100.00 96.15 100.00 100.00 90.91 100.00 97.30 100.00 93.75 100.00 100.00 100.00 96.97 100.00 100.00 100.00 100.00 96.43 96.77 100.00 100.00 100.00 95.45 96.30 100.00 100.00 100.00 96.97 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 94.44 96.00 K alternative_donor E2f,I_chr3R_17447419_17447508,CG6353 chr3R - chr3R_17447419_17448533 chr3R_17447419_17447508 chr3R_17447319_17447418;chr3R_17448534_17449373 0.24 0.32 0.00 0.31 0.00 0.00 0.33 0.77 0.39 0.00 0.00 0.52 0.56 0.51 0.40 0.47 0.69 0.00 0.57 0.17 0.00 0.33 0.24 0.31 0.00 0.00 0.00 0.00 0.44 0.00 0.47 0.00 0.00 0.68 0.36 0.38 0.00 0.33 0.00 0.43 0.00 0.48 0.00 0.00 0.32 0.34 0.00 0.47 0.78 0.00 0.24 0.75 0.00 0.00 0.00 0.00 0.29 0.00 K alternative_acceptor CG9399,I_chr3R_5403032_5403329 chr3R - chr3R_5399352_5399524;chr3R_5399318_5399524 chr3R_5399255_5399524 chr3R_5399525_5399559;chr3R_5399076_5399254 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 6.67 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 11.11 0.00 NA 0.00 0.00 NA NA NA 0.00 K multi_cassette capt,I_chr2L_1156009_1158078,I_chr2L_1153732_1154551,I_chr2L_1153732_1157370,I_chr2L_1163632_1163759 chr2L - chr2L_1153732_1155745 chr2L_1153732_1154281;chr2L_1154407_1154551;chr2L_1155054_1155745 chr2L_1154282_1154406;chr2L_1154552_1155053 chr2L_1153632_1153731;chr2L_1155746_1155788 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD RpL15 chr3LHet + chr3LHet_2398018_2398127;chr3LHet_2397859_2398127;chr3LHet_2397925_2398127;chr3LHet_2397992_2398127;chr3LHet_2398060_2398127;chr3LHet_2397841_2398127;chr3LHet_2398002_2398127;chr3LHet_2397820_2398127 chr3LHet_2398053_2398127 chr3LHet_2398128_2398454;chr3LHet_2397802_2397819 2.00 16.22 1.39 0.27 3.12 4.35 17.58 1.61 7.04 0.00 2.86 3.51 7.14 6.25 1.54 5.88 0.88 5.45 0.00 3.33 2.56 2.34 14.29 0.00 0.00 1.06 7.41 0.00 1.97 0.89 2.34 1.86 0.00 0.57 0.00 3.49 8.00 NA 8.70 0.21 1.10 1.11 1.12 0.65 0.35 0.95 4.55 0.64 2.04 7.41 7.69 13.04 0.00 17.39 0.85 12.50 9.52 0.00 K intron_retention baf,I_chr2L_8029734_8029787 chr2L + chr2L_8029734_8029815 chr2L_8029733_8029734;chr2L_8029815_8029816 chr2L_8029634_8029733;chr2L_8029816_8029887 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.45 0.30 0.00 0.00 0.27 0.00 0.00 0.00 0.58 0.00 0.00 0.44 0.00 0.00 0.31 0.00 0.14 0.00 0.42 0.62 0.76 0.18 0.20 0.00 0.00 0.24 0.16 0.00 0.00 0.26 0.00 0.00 0.00 0.30 0.11 0.00 0.15 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.39 0.30 0.34 0.11 K alternative_donor mthl3 chr2R - chr2R_13338538_13338593;chr2R_13338538_13340067;chr2R_13338538_13339957;chr2R_13338538_13340007 chr2R_13338538_13340031 chr2R_13338407_13338537;chr2R_13340068_13340078 0.00 0.00 0.00 0.00 0.00 9.09 4.00 3.45 2.70 0.00 0.00 0.00 0.00 7.14 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 4.17 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K intron_retention CG8323,CG18327 chr2R + chr2R_10053230_10053647 chr2R_10053229_10053230;chr2R_10053647_10053648 chr2R_10053094_10053229;chr2R_10053648_10054496 0.00 0.00 0.00 23.08 NA NA 0.00 12.50 0.00 NA NA 5.13 NA NA 0.00 5.56 NA 19.05 NA 0.00 NA NA 3.70 0.00 0.00 0.00 8.70 0.00 0.00 3.57 0.00 0.00 7.14 6.90 0.00 0.00 0.00 0.00 0.00 1.89 5.41 6.25 NA 0.00 3.45 4.00 0.00 5.26 3.23 7.14 0.00 0.00 0.00 0.00 0.00 0.00 14.29 5.00 K intron_retention I_chrX_15680663_15680821,Rhp chrX + chrX_15685430_15685494 chrX_15685429_15685430;chrX_15685494_15685495 chrX_15685276_15685429;chrX_15685495_15685935 0.00 NA NA 0.00 NA NA 10.00 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA NA NA 0.00 NA K jcn_only_AD CG13319,RI_chr2R_8812301_8816468 chr2R + chr2R_8811853_8811926 chr2R_8811857_8811926 chr2R_8811927_8812157;chr2R_8811372_8811852 10.71 6.35 10.64 6.25 3.23 5.26 7.69 13.04 12.31 7.81 NA 12.68 12.00 10.81 15.00 13.64 13.33 10.26 17.24 3.03 25.00 7.14 6.00 18.48 14.63 8.33 12.00 10.17 6.45 4.88 8.00 5.88 18.42 18.97 5.13 5.00 10.98 13.13 7.21 13.79 8.82 18.82 12.12 15.09 14.52 3.90 9.90 6.45 18.33 13.04 10.77 13.89 12.77 14.29 2.27 5.10 9.05 5.56 K intron_retention CG8369,EI_chr3R_4647896_4648190 chr3R + chr3R_4648389_4648445 chr3R_4648388_4648389;chr3R_4648445_4648446 chr3R_4648191_4648388;chr3R_4648446_4648577 22.97 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 36.84 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.09 NA NA NA NA NA NA NA NA K intron_retention Pi3K59F,apt chr2R + chr2R_19450832_19450889 chr2R_19450831_19450832;chr2R_19450889_19450890 chr2R_19450470_19450831;chr2R_19450890_19451605 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 4.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.68 0.00 1.89 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Lam chr2L + chr2L_5542661_5543324 chr2L_5542660_5542661;chr2L_5543324_5543325 chr2L_5542527_5542660;chr2L_5543325_5543794 0.00 0.00 3.77 0.00 0.00 0.00 0.00 3.33 2.52 0.00 3.23 1.64 0.00 3.57 0.00 1.59 0.00 0.00 0.00 1.46 0.00 0.00 0.67 0.00 0.00 0.00 0.00 1.64 0.00 0.00 1.52 0.00 2.14 1.75 0.00 0.00 1.08 0.85 0.00 0.79 0.00 2.40 0.00 0.00 1.57 0.00 0.00 0.00 1.24 0.00 1.87 0.00 0.00 0.00 0.00 0.00 0.00 1.54 K jcn_only_AA CG5991 chr3R + chr3R_19876703_19877425;chr3R_19876703_19877411 chr3R_19876703_19877421 chr3R_19876688_19876702;chr3R_19877426_19877477 38.02 NA NA 33.33 NA NA 38.71 42.59 41.03 NA NA 37.50 NA NA 62.07 27.59 30.00 NA 32.00 55.56 NA NA NA NA NA 34.62 NA NA NA NA NA NA 32.00 38.24 NA 31.82 NA NA NA 39.47 21.74 37.21 40.91 NA NA 37.93 NA 39.13 34.78 NA 43.48 NA NA NA 45.71 NA NA 38.10 K intron_retention yata chr3R + chr3R_25577990_25578050 chr3R_25577989_25577990;chr3R_25578050_25578051 chr3R_25577870_25577989;chr3R_25578051_25578453 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.91 0.00 0.00 0.00 0.00 1.22 6.71 0.48 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL24,I_chr2L_13394941_13395015 chr2L - chr2L_13394800_13394864 chr2L_13394799_13394800;chr2L_13394864_13394865 chr2L_13394521_13394799;chr2L_13394865_13394940 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.04 0.04 0.00 0.03 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.02 0.00 0.04 0.00 0.01 0.00 0.00 0.13 0.27 0.54 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.05 0.03 0.00 0.03 0.05 0.00 0.03 0.03 0.02 0.00 0.01 0.02 0.02 N jcn_only_AA kay,noncoding_19957,E_chr3R_25616137_25617114 chr3R + chr3R_25599544_25617114 chr3R_25599544_25599635 chr3R_25598998_25599543;chr3R_25617115_25617214 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.94 0.00 0.00 0.00 5.74 0.00 8.74 0.00 0.00 0.00 0.00 0.00 11.97 14.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.19 0.00 0.00 0.00 0.00 0.00 3.69 0.00 5.19 0.00 0.00 0.00 4.03 0.00 2.33 0.00 3.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor SdhA,I_chr2R_15283283_15283411,I_chr2R_15283319_15283369 chr2R - chr2R_15283283_15283369 chr2R_15283319_15283369 chr2R_15283370_15283469;chr2R_15283219_15283282 23.08 16.00 15.79 6.56 17.50 20.00 31.25 17.65 18.18 40.00 14.81 19.05 20.00 20.00 17.07 14.29 16.67 16.22 7.50 27.87 23.08 25.00 53.33 53.57 46.15 32.00 30.43 41.67 52.63 24.00 20.59 40.91 23.08 18.92 20.83 62.50 25.00 34.62 22.03 32.81 60.00 19.05 17.14 19.57 9.52 42.31 25.93 15.00 16.95 30.77 32.43 36.00 27.27 19.23 23.08 40.00 25.00 25.00 K jcn_only_AA cora,I_chr2R_15125277_15130573,I_chr2R_15125940_15130208,I_chr2R_15129291_15129988 chr2R + chr2R_15129901_15129994 chr2R_15129901_15129988 chr2R_15129679_15129900;chr2R_15129995_15130088 98.20 98.30 97.34 98.75 99.00 98.06 98.39 98.22 98.19 98.17 98.83 98.08 99.39 98.36 98.23 99.20 98.24 98.29 99.24 98.21 98.06 98.37 97.26 98.20 99.27 98.14 97.38 95.67 96.97 97.82 97.22 98.73 98.47 98.04 98.67 97.05 97.62 98.69 98.45 98.00 98.47 98.14 98.69 97.01 98.10 98.29 98.20 98.04 98.30 97.07 99.02 97.46 97.89 98.33 97.26 98.36 98.16 97.41 K jcn_only_AD Chc,RI_chrX_15728405_15729273,I_chrX_15728405_15729401,I_chrX_15728946_15729357 chrX - chrX_15728405_15729260;chrX_15728405_15729370;chrX_15728405_15729476;chrX_15728405_15729357 chrX_15728405_15729319 chrX_15728305_15728404;chrX_15729477_15729501 9.11 9.17 10.11 13.23 10.34 9.84 9.15 8.02 9.33 11.90 7.87 6.82 8.08 10.27 7.93 8.43 5.67 10.31 12.24 9.12 10.24 4.42 9.82 5.88 6.61 10.14 8.21 10.53 19.48 6.36 8.96 9.30 5.41 7.99 9.02 12.12 10.99 16.67 3.12 10.05 2.70 9.48 6.82 8.09 NA 4.88 3.53 10.09 7.54 11.36 11.88 9.09 16.22 24.44 9.04 8.22 3.23 8.51 K intron_retention CG12304 chr3L + chr3L_15576982_15577096 chr3L_15576981_15576982;chr3L_15577096_15577097 chr3L_15576765_15576981;chr3L_15577097_15577162 25.71 12.00 26.67 33.33 10.53 20.00 30.00 23.53 21.88 36.84 NA 24.14 NA 23.08 20.00 12.50 NA NA NA 26.47 NA 36.36 23.08 15.91 44.44 54.55 38.46 47.17 56.25 25.71 57.69 28.00 24.00 14.29 23.81 19.23 25.49 24.32 15.56 28.57 56.25 25.81 28.57 26.67 31.58 44.00 9.52 57.69 19.05 31.82 21.05 22.22 9.52 31.82 18.75 26.19 10.53 29.41 K alternative_donor gro chr3R + chr3R_21868626_21868716;chr3R_21868622_21868716 chr3R_21868657_21868716 chr3R_21868717_21869101;chr3R_21868588_21868621 31.01 30.00 28.57 53.85 50.00 33.33 41.18 60.00 36.67 28.57 NA 29.17 40.00 42.86 22.22 27.78 33.33 18.75 22.22 33.33 22.22 30.77 26.32 28.57 44.44 30.00 27.78 41.18 25.00 22.22 33.33 NA 18.18 36.00 28.57 31.25 23.53 41.67 31.58 21.74 NA 33.33 50.00 38.89 NA 25.00 25.00 42.86 23.81 18.18 37.50 55.56 NA 20.00 38.46 27.27 33.33 33.33 K intron_retention RpL30,I_chr2L_19008540_19008948,REI_chr2L_19008544_19008723,I_chr2L_19008544_19008918,snoRNA:Me28S-A2113 chr2L - chr2L_19008544_19008723 chr2L_19008543_19008544;chr2L_19008723_19008724 chr2L_19008444_19008543;chr2L_19008724_19008823 5.41 6.25 13.64 6.98 11.11 10.53 6.67 12.31 7.02 3.17 8.00 6.74 11.43 6.25 3.39 8.20 12.90 4.26 9.09 4.24 4.08 6.14 3.85 3.33 3.66 6.82 10.24 14.88 6.52 3.61 3.63 2.60 4.69 13.16 3.64 2.60 4.76 5.17 2.99 3.50 7.46 8.89 10.00 1.75 0.00 6.36 3.01 1.67 12.50 5.36 2.98 3.61 7.09 3.70 6.06 3.07 5.10 5.41 K cassette dnc,I_chrX_3150245_3150319,I_chrX_3150351_3152643 chrX + chrX_3215251_3226474 chrX_3215251_3219959;chrX_3219999_3226474 chrX_3219960_3219998 chrX_3215074_3215250;chrX_3226475_3226579 17.65 15.79 25.00 20.00 30.77 17.65 12.00 22.58 14.71 NA 17.65 26.09 11.11 38.46 13.04 14.29 9.09 20.00 15.38 24.32 25.00 13.33 15.79 12.50 NA 5.56 NA NA NA NA 21.88 NA 14.29 24.24 10.53 NA 23.08 7.69 13.33 19.05 NA 19.44 46.15 NA NA NA NA NA 20.83 15.00 17.65 NA NA NA 12.90 NA NA NA K jcn_only_AD CG8334,I_chr3L_19870731_19870822 chr3L + chr3L_19870674_19871932 chr3L_19870731_19871932 chr3L_19871933_19872579;chr3L_19870631_19870673 59.81 59.38 56.25 65.77 75.61 73.33 64.79 72.84 62.00 57.69 55.26 55.29 74.29 60.00 50.94 58.18 80.49 46.51 73.17 46.73 48.57 58.43 55.56 58.54 35.71 63.64 67.24 81.25 47.37 55.93 51.39 63.64 71.59 61.54 73.68 57.14 60.42 65.31 65.22 59.38 64.44 59.63 55.26 67.14 78.72 69.23 57.14 57.94 60.61 60.87 46.81 59.38 43.59 NA 72.00 60.00 48.39 50.00 K cassette Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4847655_4849003 chrX_4847655_4848149;chrX_4848658_4849003 chrX_4848150_4848657 chrX_4847526_4847654;chrX_4849004_4849551 90.91 90.00 100.00 88.24 100.00 91.67 81.25 81.82 95.65 90.00 87.50 94.12 88.89 100.00 92.86 100.00 100.00 87.50 93.33 100.00 88.89 32.14 80.95 100.00 90.91 71.43 86.67 100.00 80.00 91.67 88.24 87.50 90.91 95.24 88.89 90.00 93.75 90.00 87.50 100.00 76.92 86.36 100.00 90.91 91.67 94.12 90.91 91.67 95.24 92.86 88.89 90.00 80.00 80.00 92.86 90.00 100.00 100.00 K intron_retention CG30046 chr2R + chr2R_8202797_8202857 chr2R_8202796_8202797;chr2R_8202857_8202858 chr2R_8202597_8202796;chr2R_8202858_8203112 10.53 13.79 16.67 9.09 2.94 3.33 7.69 12.16 7.46 4.76 10.71 13.16 8.33 16.67 5.26 15.00 10.53 6.45 10.53 12.12 13.89 10.53 17.65 14.81 NA 4.35 6.25 NA 15.00 11.11 14.29 22.22 6.67 14.00 0.00 13.64 0.00 NA 0.00 17.78 6.25 12.31 10.00 0.00 12.50 0.00 9.09 17.07 11.84 6.25 15.15 9.09 6.67 20.00 14.04 3.57 4.94 11.34 K intron_retention mod(r),RI_chrX_515831_515923,I_chrX_516392_517480 chrX + chrX_516392_516478 chrX_516391_516392;chrX_516478_516479 chrX_516292_516391;chrX_516479_517065 20.00 NA 0.00 NA NA NA 30.77 26.32 17.65 NA NA 22.22 NA NA NA 22.22 NA 7.14 NA 22.73 NA 16.67 NA NA NA NA NA NA 22.73 NA NA 33.33 13.04 22.22 NA NA 18.75 NA NA 29.41 33.33 13.64 NA NA 5.00 15.62 20.00 25.00 18.18 22.22 35.71 NA 14.29 NA 0.00 14.29 21.05 6.67 K cassette Ctr1A chrX + chrX_6555835_6559032 chrX_6555835_6556272;chrX_6556375_6559032 chrX_6556273_6556374 chrX_6555724_6555834;chrX_6559033_6559111 37.78 22.64 53.12 37.50 29.63 41.67 35.56 34.43 34.51 21.15 41.67 37.21 31.25 43.33 37.78 51.22 44.12 61.29 46.88 50.88 56.67 33.87 21.74 28.33 45.83 64.71 22.03 21.05 36.67 27.03 40.00 52.63 38.81 45.10 45.45 64.29 16.50 23.08 37.78 44.26 44.00 33.82 40.74 19.75 73.08 47.37 29.41 48.65 47.17 26.23 29.79 17.95 36.00 42.31 42.11 25.93 19.10 45.57 K alternative_donor CG9705,I_chr3L_16773492_16773604,I_chr3L_16773517_16773604,I_chr3L_16774043_16774562 chr3L + chr3L_16773521_16773604;chr3L_16773492_16773604 chr3L_16773517_16773604 chr3L_16773605_16773704;chr3L_16773417_16773491 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 2.56 0.00 2.00 0.00 0.00 0.00 2.82 0.00 0.00 0.00 1.89 0.00 0.00 2.13 0.00 0.00 0.00 0.85 0.00 0.00 1.96 0.00 0.00 0.00 1.92 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Myb,RI_chrX_15752571_15753225 chrX - chrX_15751579_15751673;chrX_15751579_15751682;chrX_15751579_15751749 chrX_15751579_15751709 chrX_15749823_15751578;chrX_15751750_15751876 3.12 3.85 0.00 5.17 8.00 3.57 6.67 1.32 1.16 0.00 3.85 0.00 2.56 2.50 2.86 1.10 5.26 3.45 2.08 4.49 10.71 3.12 2.44 0.00 0.00 3.23 3.45 5.88 4.35 3.70 0.00 4.55 2.33 1.27 4.55 0.00 3.33 0.00 0.00 1.79 5.26 3.85 2.70 2.63 4.35 0.00 0.00 0.00 3.33 6.67 0.00 3.85 4.76 7.14 2.04 4.76 5.00 1.72 K jcn_only_AA fbp,I_chr2L_19762832_19763529,RI_chr2L_19763745_19764069 chr2L - chr2L_19763745_19764069;chr2L_19763498_19764069 chr2L_19762832_19764069 chr2L_19764070_19764120 26.92 NA 40.00 55.56 NA NA NA 41.67 27.27 3.45 NA 18.52 NA NA NA 24.00 NA NA 91.30 37.04 NA 16.67 NA 22.58 NA NA NA NA NA NA 13.79 NA 26.92 26.92 NA NA 22.22 NA 33.33 10.53 NA 27.59 45.45 13.33 NA 28.57 NA 41.38 37.50 36.00 17.86 NA NA 25.00 31.25 NA 22.73 16.00 N multi_cassette CG12065,CE_chrX_8469528_8477573 chrX + chrX_8478609_8481290 chrX_8478609_8478875;chrX_8478957_8479842;chrX_8479952_8480018;chrX_8480279_8481290 chrX_8478876_8478956;chrX_8479843_8479951;chrX_8480019_8480278 chrX_8478489_8478608;chrX_8481291_8481558 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor l(2)gl,I_chr2L_17213_21135,RI_chr2L_20021_20830,I_chr2L_20974_21065 chr2L - chr2L_20021_21065;chr2L_20021_21135 chr2L_20021_20830 chr2L_19921_20020;chr2L_21136_21145 8.85 NA NA 12.50 NA NA 12.50 11.11 6.67 NA NA 10.00 NA NA NA 0.00 NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 7.69 NA NA NA NA NA NA NA 10.00 0.00 14.29 NA NA NA 0.00 7.69 NA NA NA NA NA NA NA NA NA K jcn_only_AA RpS3A,I_chr4_87364_87465,I_chr4_87533_87717,I_chr4_87549_87717,I_chr4_87549_87769 chr4 - chr4_87648_87717;chr4_87549_87717 chr4_87533_87717 chr4_87718_87817;chr4_87466_87532 29.03 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 29.03 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention WASp,I_chr3R_24656400_24656715,I_chr3R_24656400_24656880,I_chr3R_24656400_24657416 chr3R - chr3R_24656400_24657416 chr3R_24656399_24656400;chr3R_24657416_24657417 chr3R_24656300_24656399;chr3R_24657417_24657516 90.84 NA NA 71.43 NA NA 100.00 NA 91.67 NA NA 100.00 NA NA NA NA NA NA NA 92.86 NA 91.67 NA NA NA NA 100.00 72.73 90.00 NA 100.00 NA 90.00 88.89 NA 100.00 NA NA NA 73.33 87.50 88.89 NA NA NA NA NA 88.89 92.86 NA 88.89 NA NA NA NA NA NA 100.00 K intron_retention drd chrX + chrX_15030524_15030594 chrX_15030523_15030524;chrX_15030594_15030595 chrX_15030375_15030523;chrX_15030595_15031278 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 5.88 14.29 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA 0.00 5.00 NA NA NA NA NA NA NA NA K intron_retention 14-3-3epsilon,I_chr3R_14068632_14073155,RI_chr3R_14074062_14074138 chr3R + chr3R_14073625_14073692 chr3R_14073624_14073625;chr3R_14073692_14073693 chr3R_14073211_14073624;chr3R_14073693_14073873 0.00 0.00 0.08 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.07 0.00 K intron_retention eIF2B-delta chr2R + chr2R_19275136_19275194 chr2R_19275135_19275136;chr2R_19275194_19275195 chr2R_19274530_19275135;chr2R_19275195_19275755 0.00 0.00 0.00 6.15 0.00 0.00 5.56 7.46 1.82 0.00 0.00 5.63 0.00 0.00 0.00 0.00 3.03 0.00 0.00 2.74 0.00 0.00 2.83 1.02 0.00 7.69 3.45 0.00 1.45 0.00 1.82 0.00 0.99 0.00 1.45 1.43 0.00 0.00 0.00 0.00 3.12 4.60 0.00 0.00 2.63 4.42 0.00 0.00 0.00 0.79 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention PP2A-B',RI_chr3R_13993929_13994503 chr3R + chr3R_13993590_13995205 chr3R_13993589_13993590;chr3R_13995205_13995206 chr3R_13993510_13993589;chr3R_13995206_13995270 19.05 30.77 NA 16.67 NA NA 11.76 15.15 16.67 NA NA 14.29 NA 3.85 11.76 12.24 23.08 NA 17.65 20.83 NA 26.32 46.15 15.00 23.08 13.33 NA NA 53.85 NA 5.00 NA 37.50 19.35 NA NA NA NA NA 18.18 35.71 19.35 19.23 40.91 NA NA NA 31.82 13.51 NA 19.05 14.29 NA NA 18.52 NA 25.00 50.00 K intron_retention rho-7,noncoding_6143 chr2R - chr2R_7876069_7876123 chr2R_7876068_7876069;chr2R_7876123_7876124 chr2R_7876008_7876068;chr2R_7876124_7876254 56.44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 54.55 NA NA NA NA NA NA 58.33 NA 6.25 NA NA NA NA 70.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG4686 chr3R + chr3R_15690648_15690710 chr3R_15690647_15690648;chr3R_15690710_15690711 chr3R_15690125_15690647;chr3R_15690711_15691019 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.21 0.00 0.00 0.00 4.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 1.48 1.49 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.02 0.00 0.00 0.00 2.20 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Uch,CG10880 chr2L - chr2L_2213959_2214027 chr2L_2213958_2213959;chr2L_2214027_2214028 chr2L_2213896_2213958;chr2L_2214028_2214049 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.28 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 96.30 100.00 100.00 K jcn_only_AA CG17514 chr2RHet + chr2RHet_2775916_2775978 chr2RHet_2775916_2775968 chr2RHet_2775909_2775915;chr2RHet_2775979_2776071 93.06 NA 94.59 91.04 NA 96.15 91.36 93.06 89.19 NA NA 93.33 93.48 95.74 100.00 95.52 96.30 82.61 92.16 91.30 NA NA NA NA NA 90.48 NA NA NA NA 94.74 NA NA 93.44 NA NA NA NA NA 90.48 NA 91.18 93.55 NA NA NA NA NA 90.91 NA NA NA NA NA 92.11 NA NA NA K jcn_only_AA I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_927233_927699,RI_chr4_927771_929704,CG32021,RI_chr4_928180_928245,RI_chr4_928193_928245,I_chr4_928482_929704,noncoding_20815,I_chr4_929811_932812 chr4 - chr4_928482_929704;chr4_928551_929704 chr4_927771_929704 chr4_929705_929804;chr4_927741_927770 12.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.71 NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention shtd chrX - chrX_15351477_15351535 chrX_15351476_15351477;chrX_15351535_15351536 chrX_15351042_15351476;chrX_15351536_15353580 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 9.09 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette B4,REI_chr2L_13509793_13534906,EI_chr2L_13513471_13534906,I_chr2L_13513474_13549131,I_chr2L_13547304_13549131 chr2L - chr2L_13513474_13549131 chr2L_13513474_13534906;chr2L_13535027_13549131 chr2L_13534907_13535026 chr2L_13513374_13513473;chr2L_13549132_13549231 90.91 100.00 NA 100.00 100.00 85.71 83.33 100.00 92.31 NA NA 100.00 100.00 100.00 85.71 90.00 100.00 100.00 100.00 92.31 NA 80.00 88.89 100.00 85.71 NA 90.00 90.91 85.71 71.43 85.71 80.00 39.13 90.91 NA 100.00 100.00 NA 92.31 100.00 NA 100.00 87.50 100.00 83.33 88.89 88.89 66.67 90.91 90.00 100.00 100.00 100.00 83.33 83.33 100.00 90.00 77.78 K cassette scarface,I_chr2R_1568023_1575180 chr2R - chr2R_1568023_1575180 chr2R_1568023_1572308;chr2R_1572483_1575180 chr2R_1572309_1572482 chr2R_1567923_1568022;chr2R_1575181_1575280 100.00 98.89 100.00 96.48 100.00 98.36 100.00 98.65 99.31 100.00 100.00 99.25 100.00 98.39 98.48 100.00 97.87 98.46 100.00 99.31 100.00 99.47 100.00 99.16 98.70 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.63 99.37 99.02 99.27 100.00 95.00 99.28 100.00 99.25 100.00 99.03 100.00 99.12 100.00 100.00 100.00 98.68 98.33 100.00 100.00 100.00 98.46 98.31 N jcn_only_AD CG8531,RI_chr2R_10144869_10144912 chr2R + chr2R_10145138_10145276;chr2R_10145070_10145276 chr2R_10145224_10145276 chr2R_10145277_10145393;chr2R_10144926_10145069 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.16 90.79 100.00 100.00 95.18 100.00 100.00 100.00 92.45 100.00 100.00 100.00 95.69 100.00 76.79 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 71.24 100.00 100.00 94.30 100.00 100.00 100.00 87.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.04 82.17 83.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N cassette crol,I_chr2L_11799403_11802904 chr2L - chr2L_11800323_11803784 chr2L_11800323_11802904;chr2L_11803675_11803784 chr2L_11802905_11803674 chr2L_11800155_11800322;chr2L_11803785_11803898 100.00 100.00 100.00 95.70 100.00 100.00 100.00 96.20 97.98 100.00 100.00 100.00 100.00 100.00 94.77 100.00 100.00 100.00 100.00 97.08 100.00 97.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.70 96.91 97.49 98.03 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 95.48 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG12746,I_chr3R_1391015_1391809,I_chr3R_1391178_1391809,I_chr3R_1391690_1391809,Rheb chr3R + chr3R_1390705_1391809 chr3R_1390747_1391809 chr3R_1391810_1391909;chr3R_1390681_1390704 80.35 NA NA NA NA NA NA 85.71 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention sec8 chr3R - chr3R_1582991_1583060 chr3R_1582990_1582991;chr3R_1583060_1583061 chr3R_1582866_1582990;chr3R_1583061_1583811 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 2.67 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG3632,RI_chrX_16195880_16196242 chrX + chrX_16190824_16191693;chrX_16190917_16191693 chrX_16190941_16191693 chrX_16191694_16191751;chrX_16190763_16190823 33.81 23.08 14.29 22.22 40.00 25.00 34.38 32.43 35.00 NA 18.18 21.21 37.50 20.00 23.81 27.78 33.33 35.71 31.58 34.29 30.77 41.67 27.27 40.00 38.46 35.71 35.71 41.67 42.86 50.00 27.27 42.86 28.57 39.39 42.86 30.00 17.65 33.33 33.33 30.77 NA 28.95 28.57 38.46 50.00 58.33 30.00 38.46 36.36 42.86 31.58 12.50 50.00 NA 36.84 18.18 38.46 58.33 K intron_retention CG14778 chrX + chrX_1364131_1364189 chrX_1364130_1364131;chrX_1364189_1364190 chrX_1364048_1364130;chrX_1364190_1364372 77.78 NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA 69.23 NA NA NA NA NA NA NA NA NA NA 77.78 NA NA NA NA NA 80.00 NA NA NA NA 63.64 NA NA 64.29 87.50 NA 72.73 NA NA NA NA NA NA NA NA NA 87.50 K intron_retention Ptp99A,I_chr3R_25302126_25302175 chr3R + chr3R_25302126_25307188 chr3R_25302125_25302126;chr3R_25307188_25307189 chr3R_25302026_25302125;chr3R_25307189_25307478 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention fw chrX - chrX_11888764_11888847 chrX_11888763_11888764;chrX_11888847_11888848 chrX_11888724_11888763;chrX_11888848_11888960 50.00 60.00 NA NA NA NA NA NA 45.00 NA NA 40.00 NA NA NA NA NA NA NA 46.15 NA 9.52 60.00 55.56 NA NA 50.00 NA NA NA 73.33 NA NA NA NA 28.57 50.00 NA 33.33 47.06 NA 50.00 NA 52.94 72.73 63.64 46.67 NA 50.00 46.67 50.00 60.00 76.47 50.00 60.00 50.00 58.82 NA K jcn_only_AD MED1 chr3L - chr3L_21623014_21624037 chr3L_21623014_21624032 chr3L_21621425_21623013;chr3L_21624038_21625939 100.00 100.00 NA NA NA NA NA NA 100.00 100.00 NA 96.00 NA NA NA NA NA NA NA 96.15 NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 NA 100.00 97.53 NA 96.15 100.00 96.97 100.00 100.00 100.00 100.00 NA NA 100.00 98.44 98.18 100.00 98.86 96.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 K alternative_donor woc,I_chr3R_23089174_23089688,I_chr3R_23089174_23089695,I_chr3R_23096096_23096561 chr3R - chr3R_23089174_23089688;chr3R_23089174_23089498 chr3R_23089174_23089695 chr3R_23089074_23089173;chr3R_23089696_23089772 1.52 1.79 1.35 2.80 1.61 2.04 3.16 0.88 2.35 0.00 1.72 0.68 1.47 0.00 1.19 0.93 1.75 4.76 2.53 2.87 1.61 13.95 2.44 1.56 0.00 1.52 0.00 0.00 0.00 0.00 1.08 0.00 0.00 1.69 2.27 0.00 1.64 4.26 1.54 0.84 2.63 1.43 0.00 1.56 2.44 2.63 0.00 2.91 0.68 0.00 0.00 0.00 0.00 0.00 4.35 0.00 3.12 1.92 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2393243 chrX_2387249_2389073;chrX_2389272_2389644;chrX_2389762_2392054;chrX_2392149_2392515;chrX_2392665_2393243 chrX_2389074_2389271;chrX_2389645_2389761;chrX_2392055_2392148;chrX_2392516_2392664 chrX_2387149_2387248;chrX_2393244_2393291 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG17490 chr2L + chr2L_22431301_22432684 chr2L_22431300_22431301;chr2L_22432684_22432685 chr2L_22431022_22431300;chr2L_22432685_22433056 90.00 82.14 94.12 91.18 94.12 86.21 100.00 84.21 88.41 88.89 55.00 91.30 96.00 87.88 95.83 98.88 96.43 92.31 92.50 84.00 78.95 95.45 81.82 91.67 90.91 78.95 95.00 91.67 94.44 66.67 81.82 92.31 76.19 91.07 95.65 83.33 93.75 73.33 85.71 89.47 90.00 83.33 81.25 80.00 95.00 85.00 96.15 80.95 90.00 95.00 96.15 80.95 94.74 93.33 88.24 82.61 83.87 73.17 K alternative_donor RpL10Ab,snoRNA:Psi18S-920 chr3L + chr3L_11815991_11816299 chr3L_11816042_11816299 chr3L_11816300_11816370;chr3L_11815955_11815990 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.07 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.14 0.00 0.00 0.00 0.00 NA 0.00 0.08 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.04 0.00 0.00 0.00 0.07 0.00 1.61 0.00 0.00 NA 0.00 0.00 0.00 0.03 K alternative_acceptor Zyx102EF,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1081280_1081366;chr4_1081261_1081366 chr4_1081286_1081366 chr4_1081367_1081379;chr4_1081180_1081260 21.05 NA NA 16.67 NA NA 21.05 20.00 25.93 NA NA 28.57 8.33 NA NA 28.57 NA NA 25.00 18.75 NA NA NA NA NA NA NA NA NA NA 15.38 NA NA 23.53 NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA K mutually_exclusive vib,RI_chr3R_15051793_15052186 chr3R - chr3R_15044234_15044690,chr3R_15044769_15044910 chr3R_15044234_15044405,chr3R_15044487_15044910 chr3R_15044691_15044768 chr3R_15044406_15044486 chr3R_15044124_15044233;chr3R_15044911_15045062 2.88 1.98 2.17 1.54 4.41 2.94 2.88 3.97 3.33 0.00 0.00 2.19 10.94 5.63 2.86 2.54 4.05 4.76 2.33 3.43 1.30 5.41 3.65 3.97 4.11 0.00 4.42 9.09 7.55 2.60 2.56 3.64 1.85 1.71 6.67 5.06 3.79 2.15 1.75 2.99 4.76 2.84 1.61 3.19 4.88 1.72 0.72 6.58 1.95 2.02 2.80 4.82 0.00 3.81 2.73 3.64 0.58 2.15 K multi_cassette CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_261460_265805 chr4_261460_263086;chr4_263306_263795;chr4_264212_264259;chr4_264375_265805 chr4_263087_263305;chr4_263796_264211;chr4_264260_264374 chr4_261360_261459;chr4_265806_265905 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG15514 chr3R - chr3R_25686337_25686428 chr3R_25686358_25686428 chr3R_25686429_25687281;chr3R_25685755_25686336 50.57 57.26 44.63 63.04 54.13 61.48 67.55 44.87 47.85 50.57 51.40 55.85 50.88 44.76 52.99 49.63 58.02 52.50 57.00 49.75 50.00 70.59 46.32 47.33 45.68 67.18 47.10 41.56 53.98 50.00 42.98 43.30 42.97 45.34 54.72 70.59 41.57 58.18 41.88 57.96 56.60 52.94 50.00 50.00 44.85 49.33 48.06 50.00 41.85 47.25 52.82 53.49 59.22 52.59 55.91 54.27 50.30 65.00 K intron_retention Arp66B chr3L - chr3L_8107152_8107212 chr3L_8107151_8107152;chr3L_8107212_8107213 chr3L_8106588_8107151;chr3L_8107213_8107296 0.00 0.00 0.47 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 1.03 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2436229_2439576 chr3L_2436229_2439498 chr3L_2436209_2436228;chr3L_2439577_2439583 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.57 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.47 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG17159,CG17162,noncoding_25215 chrXHet - chrXHet_66049_66121 chrXHet_66048_66049;chrXHet_66121_66122 chrXHet_64549_66048;chrXHet_66122_66324 73.17 77.55 63.46 91.67 63.16 78.38 73.61 73.26 68.10 67.57 73.53 60.00 71.88 72.73 68.33 79.73 69.23 73.17 74.07 71.30 75.76 72.22 80.30 64.41 75.00 81.03 91.67 91.30 88.57 64.58 60.00 65.62 66.67 69.74 65.12 76.47 78.57 62.96 75.00 64.71 76.92 77.78 67.44 74.55 87.88 64.15 73.68 67.82 71.60 81.25 77.55 74.47 71.79 80.00 67.19 71.11 90.00 62.50 K jcn_only_AD CG3884,I_chr2R_8837592_8837657 chr2R - chr2R_8837592_8839677 chr2R_8837592_8837657 chr2R_8837492_8837591;chr2R_8839678_8839836 1.68 2.94 3.12 1.52 8.70 2.17 0.00 0.00 1.37 6.90 0.00 17.39 NA 0.00 0.00 0.00 4.35 3.45 0.00 1.11 2.94 0.00 0.00 2.13 2.13 0.00 2.00 3.85 0.00 0.00 1.75 0.00 NA 3.85 0.00 0.00 4.55 0.00 0.00 1.67 NA 1.69 4.17 3.28 2.94 3.12 3.70 0.00 0.00 0.00 0.00 0.00 8.57 8.33 1.89 3.12 0.00 4.00 K intron_retention CG4589,I_chr2R_20402394_20402706 chr2R - chr2R_20398317_20398376 chr2R_20398316_20398317;chr2R_20398376_20398377 chr2R_20398020_20398316;chr2R_20398377_20400694 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.85 0.00 3.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette pho,RI_chr4_1193657_1194431,I_chr4_1193830_1194784,EI_chr4_1193830_1195360,RI_chr4_1193830_1195384,I_chr4_1193830_1201673 chr4 - chr4_1193830_1194784 chr4_1193830_1194431;chr4_1194724_1194784 chr4_1194432_1194723 chr4_1193730_1193829;chr4_1194785_1194884 96.59 96.77 95.24 92.75 96.15 93.10 94.52 96.59 95.24 100.00 96.00 96.72 97.92 95.45 100.00 97.75 97.44 100.00 95.24 90.28 95.24 100.00 95.00 100.00 94.44 89.47 97.14 100.00 78.95 100.00 97.83 94.74 94.44 95.18 95.83 95.45 100.00 100.00 100.00 89.74 95.65 94.87 97.67 97.06 95.65 100.00 100.00 92.86 98.95 97.37 100.00 93.75 100.00 95.65 95.65 100.00 97.50 97.56 K alternative_donor lgs,RI_chr4_463390_463489 chr4 - chr4_459792_460088 chr4_459792_460073 chr4_459601_459791;chr4_460089_462077 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 94.74 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 94.74 NA 97.14 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 92.31 100.00 K alternative_acceptor CG8177,E_chr3L_9756800_9772650,RI_chr3L_9757294_9758708,I_chr3L_9773534_9773635,I_chr3L_9774319_9774602 chr3L + chr3L_9757294_9764754 chr3L_9757294_9758708 chr3L_9757194_9757293;chr3L_9764755_9765019 0.00 0.00 0.00 2.08 0.00 0.00 0.00 2.44 1.49 0.00 0.00 2.70 0.00 0.00 0.00 2.56 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 K intron_retention CG9577,CG9578 chrX + chrX_20061153_20061223 chrX_20061152_20061153;chrX_20061223_20061224 chrX_20060990_20061152;chrX_20061224_20061848 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 2.63 5.08 2.47 5.13 0.00 3.57 8.57 5.41 0.00 6.12 0.00 4.44 0.00 0.00 0.00 2.78 4.62 1.43 2.88 6.45 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 3.77 K alternative_last_exon noncoding_21282,RI_chrX_941459_976499,I_chrX_941459_982652,CG14629 chrX + chrX_941459_982652 chrX_941459_982554 chrX_982653_982899 chrX_982555_982604 chrX_941359_941458 69.23 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 69.23 K intron_retention CG18317,RI_chr2L_1718492_1723881,I_chr2L_1718904_1718995,RI_chr2L_1718904_1724234 chr2L - chr2L_1718904_1723881 chr2L_1718903_1718904;chr2L_1723881_1723882 chr2L_1718804_1718903;chr2L_1723882_1723981 0.00 2.27 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.35 0.00 NA 0.00 NA 0.00 0.00 0.00 1.75 0.00 3.57 2.70 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 K jcn_only_AD CG5608 chr3R - chr3R_8288525_8288579 chr3R_8288525_8288577 chr3R_8288136_8288524;chr3R_8288580_8288820 97.94 100.00 100.00 96.97 NA NA 96.15 97.62 95.65 NA NA 100.00 NA NA 95.65 94.87 100.00 100.00 100.00 95.35 91.67 100.00 100.00 100.00 NA 100.00 98.00 NA NA NA 100.00 NA NA 97.73 96.00 100.00 NA 100.00 100.00 100.00 NA 97.62 100.00 100.00 100.00 95.83 97.67 NA 96.88 96.97 97.50 95.65 NA 95.56 97.06 97.87 100.00 NA K alternative_acceptor SWAP,RI_chrX_936466_936762,I_chrX_936466_936835,RI_chrX_938935_938985,I_chrX_941459_982652 chrX + chrX_936466_936835;chrX_936466_936966 chrX_936466_936762 chrX_936366_936465;chrX_936967_937018 50.00 66.67 66.67 40.00 33.33 28.57 41.18 62.50 59.09 33.33 NA 50.00 57.14 42.86 50.00 NA 62.50 33.33 70.00 40.00 NA 50.00 42.86 33.33 NA NA 50.00 NA 33.33 40.00 45.45 75.00 42.86 57.14 50.00 NA 33.33 80.00 50.00 37.50 11.11 55.56 NA 83.33 60.00 44.44 60.00 50.00 50.00 54.55 38.46 75.00 100.00 50.00 60.00 14.29 60.00 44.44 K intron_retention CG4896,REI_chr2L_1179197_1179859,I_chr2L_1191535_1191648 chr2L + chr2L_1179197_1179859 chr2L_1179196_1179197;chr2L_1179859_1179860 chr2L_1179127_1179196;chr2L_1179860_1179937 34.31 NA NA 5.56 NA NA NA 42.11 41.18 NA NA 43.75 NA NA NA NA NA NA NA 35.71 NA NA 30.77 13.33 NA NA NA NA NA NA 16.67 NA NA 33.33 NA 9.09 17.39 NA NA 40.00 NA 37.50 NA NA NA NA 50.00 28.57 27.27 NA 35.29 NA NA NA 38.46 NA NA NA K alternative_donor CG12162,I_chr3R_1293876_1293924,I_chr3R_1294319_1294410 chr3R + chr3R_1293872_1293924 chr3R_1293876_1293924 chr3R_1293925_1294024;chr3R_1293776_1293871 0.00 1.96 6.67 2.94 0.00 0.00 0.00 4.44 0.00 0.00 0.00 1.59 NA 0.00 0.00 0.00 0.00 0.00 0.00 4.29 0.00 3.03 2.67 2.38 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 3.37 0.00 0.00 3.33 0.00 1.27 1.23 0.97 3.92 1.43 NA 0.00 0.00 1.03 0.00 1.54 1.69 1.85 0.00 0.00 0.00 1.64 0.00 1.59 0.00 1.39 K intron_retention Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8089737_8105691 chr2L_8089736_8089737;chr2L_8105691_8105692 chr2L_8089558_8089736;chr2L_8105692_8105782 0.00 0.00 0.00 0.00 0.32 0.00 0.25 0.32 0.19 0.00 0.00 0.51 0.00 0.00 0.00 0.48 0.38 0.00 0.00 0.37 0.00 0.00 0.39 0.00 0.00 0.23 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.12 0.00 0.41 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor ifc,I_chr2L_5986893_5987347,RI_chr2L_5987175_5987347,noncoding_1271 chr2L + chr2L_5986893_5987615 chr2L_5986893_5987347 chr2L_5986793_5986892;chr2L_5987616_5987779 4.23 5.29 2.53 4.31 2.00 2.63 4.36 3.67 4.59 5.56 3.68 3.91 6.87 3.49 3.91 6.47 3.31 5.10 5.28 4.68 4.23 4.07 5.31 4.04 5.37 1.33 4.41 8.79 3.51 5.38 4.33 5.94 4.83 4.37 3.59 4.51 3.67 3.83 2.65 4.15 4.29 3.49 4.07 5.26 3.70 4.76 3.09 6.93 4.26 4.96 3.17 5.19 2.15 2.86 2.88 4.23 2.87 4.49 K intron_retention ham chr2L - chr2L_18769192_18771252 chr2L_18769191_18769192;chr2L_18771252_18771253 chr2L_18769035_18769191;chr2L_18771253_18771397 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 K intron_retention Vha100-1,I_chr3R_24958227_24960770,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24960321_24960770 chr3R_24960320_24960321;chr3R_24960770_24960771 chr3R_24960279_24960320;chr3R_24960771_24960870 25.00 NA NA 20.00 NA NA NA 7.14 38.46 NA NA 14.29 NA NA NA NA NA NA NA 20.00 NA 50.00 30.43 21.43 28.57 NA NA NA NA NA NA NA NA NA NA 16.67 25.00 NA 33.33 NA NA 25.00 NA NA 20.00 NA NA NA NA NA 38.46 NA NA NA NA NA NA NA K intron_retention ens,I_chr3L_4130719_4131120 chr3L - chr3L_4127163_4128307 chr3L_4127162_4127163;chr3L_4128307_4128308 chr3L_4126989_4127162;chr3L_4128308_4128373 39.02 NA NA NA NA NA NA NA NA NA NA 27.50 NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA 46.67 41.67 NA 36.36 NA NA NA NA NA NA NA K alternative_donor HP4,I_chr3L_7968788_7968857 chr3L - chr3L_7968788_7968861 chr3L_7968788_7968857 chr3L_7968688_7968787;chr3L_7968862_7968957 0.00 0.54 0.62 0.39 0.00 0.00 1.09 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.72 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.37 0.00 0.00 0.00 0.39 0.00 0.47 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 K alternative_last_exon CG33691_CG33692,CG33691,noncoding_22320 chrX + chrX_6766955_6771946 chrX_6766955_6768354 chrX_6771947_6772516 chrX_6768355_6768589 chrX_6766749_6766954 22.73 18.57 22.95 21.79 18.18 21.43 17.46 31.58 25.00 13.11 45.00 21.10 21.95 28.57 22.95 35.59 26.53 34.92 30.51 22.05 33.96 7.35 17.65 15.91 8.70 15.38 14.29 13.83 19.28 15.12 18.87 34.62 25.77 24.49 21.43 7.59 9.72 12.77 10.26 29.57 25.58 21.21 28.89 23.33 23.73 36.11 22.73 24.51 20.95 38.03 14.85 17.54 25.58 26.67 23.38 26.23 34.09 39.51 K intron_retention Pk61C chr3L + chr3L_142880_142942 chr3L_142879_142880;chr3L_142942_142943 chr3L_141895_142879;chr3L_142943_143217 0.00 0.00 0.00 1.30 0.00 0.00 0.00 1.19 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD DMAP1,I_chr2R_16531774_16531833,I_chr2R_16532870_16532932 chr2R + chr2R_16532870_16532932 chr2R_16532874_16532932 chr2R_16532933_16533032;chr2R_16532770_16532869 98.55 98.11 97.92 98.44 98.00 100.00 97.78 100.00 100.00 100.00 100.00 97.62 100.00 97.14 97.83 95.00 100.00 95.24 97.73 98.51 100.00 100.00 98.77 98.65 100.00 97.67 95.59 98.21 100.00 97.83 94.74 100.00 98.48 100.00 100.00 97.22 95.08 100.00 100.00 95.59 98.28 94.94 94.12 97.06 98.44 98.63 98.81 100.00 100.00 98.94 98.53 100.00 96.55 100.00 100.00 98.55 100.00 100.00 K jcn_only_AD CG1275,I_chr3L_2261108_2261339 chr3L - chr3L_2253272_2253328 chr3L_2253272_2253324 chr3L_2252785_2253271;chr3L_2253329_2253692 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.29 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 K alternative_donor larp,F_chr3R_24151542_24153876,I_chr3R_24160430_24160932,I_chr3R_24160430_24160971,RI_chr3R_24160430_24161527 chr3R - chr3R_24160430_24160932;chr3R_24160430_24160971;chr3R_24160430_24160975;chr3R_24160430_24160979;chr3R_24160430_24161939;chr3R_24160430_24161527 chr3R_24160430_24161729 chr3R_24160330_24160429;chr3R_24161940_24162125 73.00 78.21 72.83 80.69 73.33 72.97 79.08 81.98 78.34 69.44 75.41 76.14 78.95 79.78 73.86 74.17 79.49 77.38 77.17 75.62 75.00 70.30 69.30 68.69 66.67 74.32 74.23 81.20 48.00 69.62 75.00 68.97 73.03 78.12 71.21 65.79 66.32 65.22 73.00 64.34 73.08 73.63 78.12 63.01 59.09 65.00 77.94 59.50 70.25 71.88 65.69 68.00 63.33 72.73 75.96 71.74 72.34 58.76 K jcn_only_AA SelR,I_chr3R_6692390_6692530,I_chr3R_6692461_6692530,I_chr3R_6694098_6694160 chr3R - chr3R_6692416_6692530 chr3R_6692461_6692530 chr3R_6692531_6692630;chr3R_6692361_6692415 0.00 1.14 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 3.16 6.35 0.00 0.00 0.00 2.56 1.28 0.00 0.00 0.74 0.00 1.18 0.00 0.00 2.08 0.00 1.79 0.00 1.12 1.08 0.98 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.54 K intron_retention CG17119,sav chr3R - chr3R_18881861_18881920 chr3R_18881860_18881861;chr3R_18881920_18881921 chr3R_18881764_18881860;chr3R_18881921_18882048 1.12 0.00 2.73 1.16 0.00 0.00 0.00 0.66 0.77 0.00 0.00 1.12 0.00 0.00 1.83 0.79 1.06 0.00 0.00 0.00 0.00 4.12 1.55 1.28 0.00 0.85 5.07 14.29 7.46 1.19 1.54 2.70 1.96 0.00 1.61 2.70 1.05 1.75 2.41 2.16 3.03 0.00 0.00 1.42 0.00 2.33 0.93 2.80 0.51 3.05 2.26 0.00 0.00 2.41 0.80 1.60 1.30 1.99 K intron_retention CG6621 chr3R - chr3R_6718574_6718636 chr3R_6718573_6718574;chr3R_6718636_6718637 chr3R_6718362_6718573;chr3R_6718637_6719133 0.00 0.00 0.00 0.00 NA 0.00 4.55 0.00 3.85 NA NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 4.00 21.74 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 2.63 NA 0.00 NA NA NA 0.00 0.00 0.00 0.00 K intron_retention CG7830 chr2L - chr2L_8307874_8307982 chr2L_8307873_8307874;chr2L_8307982_8307983 chr2L_8307147_8307873;chr2L_8307983_8308265 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 1.03 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention tnc,beta4GalT7,Hr96 chr3R + chr3R_20849189_20849249 chr3R_20849188_20849189;chr3R_20849249_20849250 chr3R_20848918_20849188;chr3R_20849250_20849871 6.06 0.00 0.00 6.90 5.88 0.00 3.33 0.00 12.20 5.56 0.00 2.63 9.09 NA 8.33 12.00 0.00 0.00 NA 11.76 0.00 15.38 9.76 7.84 9.68 14.29 5.56 8.33 8.00 8.00 19.23 5.26 8.16 4.55 7.41 6.25 3.64 6.67 3.70 6.94 7.69 4.44 NA 1.59 1.64 6.45 8.89 2.70 0.00 15.15 3.57 13.79 0.00 10.00 7.41 5.17 0.00 3.12 K intron_retention jagn chr3R + chr3R_1605895_1605956 chr3R_1605894_1605895;chr3R_1605956_1605957 chr3R_1605522_1605894;chr3R_1605957_1606289 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7188 chr3L - chr3L_8301646_8301795 chr3L_8301645_8301646;chr3L_8301795_8301796 chr3L_8301192_8301645;chr3L_8301796_8302038 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 1.69 0.00 0.36 0.00 0.00 0.29 1.79 0.00 0.00 0.85 0.00 0.00 0.28 0.00 0.00 0.00 0.93 0.57 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD bowl,RI_chr2L_3772695_3773616 chr2L + chr2L_3771874_3772460;chr2L_3771755_3772460 chr2L_3771785_3772460 chr2L_3772461_3772694;chr2L_3771707_3771754 76.67 NA NA NA NA NA 70.83 68.18 76.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 78.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.48 NA NA NA K cassette CG31145,I_chr3R_19444761_19448092,I_chr3R_19452259_19452318 chr3R - chr3R_19442045_19452318 chr3R_19442045_19448092;chr3R_19448372_19452318 chr3R_19448093_19448371 chr3R_19441993_19442044;chr3R_19452319_19452369 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA K alternative_acceptor RpS3A,I_chr4_87364_87465,I_chr4_87533_87717,I_chr4_87549_87717,I_chr4_87549_87769 chr4 - chr4_87533_87769 chr4_87549_87769 chr4_87770_87817;chr4_87466_87532 99.94 99.95 99.95 99.91 99.88 99.94 99.93 99.92 99.91 100.00 99.95 99.95 99.96 100.00 99.96 99.88 100.00 99.93 99.93 99.84 99.94 99.90 99.94 99.94 99.92 99.96 100.00 99.92 100.00 99.71 99.96 99.55 99.86 99.93 99.91 100.00 100.00 99.91 99.94 99.87 100.00 99.98 99.95 100.00 99.49 99.85 99.90 99.66 99.97 99.87 100.00 100.00 99.93 100.00 99.90 100.00 99.92 99.30 K intron_retention Arf51F,I_chr2R_11210733_11210953 chr2R + chr2R_11210218_11210953 chr2R_11210217_11210218;chr2R_11210953_11210954 chr2R_11209979_11210217;chr2R_11210954_11211053 57.75 55.56 57.75 48.42 58.70 59.68 65.43 42.42 58.47 64.44 52.00 75.73 58.33 56.45 60.24 55.22 59.32 69.01 56.92 56.20 58.90 55.56 67.95 69.70 70.59 67.11 71.79 55.32 57.14 59.42 58.46 52.38 40.91 56.52 56.25 78.38 79.31 71.43 65.67 40.68 41.89 56.69 53.85 59.65 56.63 37.17 56.45 37.07 58.93 65.38 55.56 65.31 52.08 50.88 54.55 67.86 59.02 33.92 K alternative_acceptor rho-7,noncoding_6143 chr2R - chr2R_7876063_7876127 chr2R_7876069_7876127 chr2R_7876128_7876254;chr2R_7876008_7876062 100.00 94.12 93.75 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 94.74 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 K intron_retention CG10737 chr2R + chr2R_15064249_15064445 chr2R_15064248_15064249;chr2R_15064445_15064446 chr2R_15064096_15064248;chr2R_15064446_15064451 24.24 NA NA 19.05 NA NA NA 42.86 37.50 NA NA 24.24 0.00 NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 25.00 NA 28.57 NA NA NA 12.50 NA NA 25.00 NA NA NA NA NA NA NA NA NA N jcn_only_AA CG14253 chr3R + chr3R_22807474_22809684 chr3R_22807474_22807525 chr3R_22807374_22807473;chr3R_22809685_22809939 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG17549,R_chr2L_19388305_19388473,RI_chr2L_19388570_19389427,I_chr2L_19388570_19389922 chr2L - chr2L_19388570_19389427;chr2L_19388570_19389926;chr2L_19388570_19389935 chr2L_19388570_19389764 chr2L_19388474_19388569;chr2L_19389936_19390022 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N jcn_only_AA Tsp42Ed chr2R - chr2R_2897806_2897936 chr2R_2897868_2897936 chr2R_2897937_2898098;chr2R_2897608_2897805 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,RI_chr2R_20289332_20289739,I_chr2R_20289332_20289846,I_chr2R_20289332_20290093 chr2R - chr2R_20289332_20289739;chr2R_20289332_20290093;chr2R_20289332_20289846 chr2R_20289332_20290083 chr2R_20289232_20289331;chr2R_20290094_20290193 90.00 NA NA 63.89 NA 95.83 90.24 82.93 79.41 NA NA 87.50 86.67 81.58 73.33 90.62 84.21 83.33 73.17 91.49 91.67 74.19 93.75 85.71 NA 88.24 100.00 95.65 NA 94.44 93.02 NA 86.96 90.00 96.55 100.00 95.45 NA NA 85.71 NA 83.33 85.19 80.95 NA 90.32 90.48 93.88 92.73 NA 94.87 93.75 86.36 NA 84.38 NA NA 90.32 K intron_retention PNUTS,I_chr2L_870553_871317 chr2L + chr2L_871275_871340 chr2L_871274_871275;chr2L_871340_871341 chr2L_871122_871274;chr2L_871341_871417 4.44 NA 0.00 0.00 NA NA 15.38 3.23 4.44 NA NA 0.00 11.11 8.70 NA 15.38 NA NA 8.70 0.00 NA NA 3.57 0.00 25.00 NA 28.57 6.67 14.29 6.67 NA NA NA 16.13 NA 26.67 0.00 0.00 0.00 7.69 NA 3.85 NA 0.00 NA NA NA NA 7.14 0.00 6.45 0.00 NA NA NA NA 0.00 NA K intron_retention l(2)k14505,I_chr2L_21261891_21262012,I_chr2L_21275807_21277205 chr2L + chr2L_21261958_21262012 chr2L_21261957_21261958;chr2L_21262012_21262013 chr2L_21261777_21261957;chr2L_21262013_21262112 0.68 0.00 2.44 3.36 0.00 0.00 2.80 1.82 0.00 0.00 3.51 1.56 0.00 0.00 1.22 0.00 4.35 0.00 0.00 1.40 0.00 0.00 0.91 0.00 5.88 1.11 8.74 10.53 1.47 4.44 0.00 0.00 1.43 2.52 0.00 0.00 0.00 1.59 0.00 0.00 10.00 1.71 0.00 0.00 0.00 0.86 0.00 0.00 1.64 0.00 0.83 0.00 3.30 2.35 0.00 0.95 0.68 0.85 K intron_retention MRP,F_chr2L_12727117_12736035 chr2L + chr2L_12738748_12738806 chr2L_12738747_12738748;chr2L_12738806_12738807 chr2L_12738241_12738747;chr2L_12738807_12739188 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.37 0.00 1.08 1.77 0.58 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 K intron_retention gish chr3R + chr3R_12106734_12107802 chr3R_12106733_12106734;chr3R_12107802_12107803 chr3R_12106723_12106733;chr3R_12107803_12107810 45.80 NA NA NA NA NA NA NA 69.23 NA NA NA NA NA NA 45.45 NA NA NA 46.15 NA 40.00 NA 63.64 NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA 36.36 NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG14438 chrX + chrX_6654244_6654309 chrX_6654243_6654244;chrX_6654309_6654310 chrX_6654025_6654243;chrX_6654310_6654379 0.00 0.00 0.00 0.00 0.00 0.00 9.52 2.27 5.48 0.00 NA 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 2.44 0.00 0.00 3.85 10.81 19.05 12.12 0.00 0.00 NA 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K intron_retention Dhc64C chr3L - chr3L_4812256_4813327 chr3L_4812255_4812256;chr3L_4813327_4813328 chr3L_4812189_4812255;chr3L_4813328_4815436 3.77 0.00 NA 21.05 NA 0.00 15.38 0.00 5.88 NA 12.50 12.90 NA NA 0.00 8.00 NA NA 0.00 0.00 NA 0.00 5.66 6.45 9.09 NA 6.45 18.52 NA 10.53 0.00 NA 3.85 10.81 0.00 3.45 0.00 0.00 11.54 21.21 NA 3.77 NA 0.00 0.00 0.00 0.00 8.82 9.30 9.52 11.54 0.00 0.00 NA 0.00 0.00 0.00 6.25 K jcn_only_AA f-cup,EI_chr3R_9524613_9524789 chr3R - chr3R_9524004_9524789 chr3R_9524582_9524789 chr3R_9524790_9524889 0.00 0.00 2.50 0.00 0.00 0.00 0.00 2.27 0.00 NA 0.00 0.00 0.00 3.12 2.33 0.00 4.00 8.00 3.33 3.08 0.00 0.00 3.03 0.00 0.00 0.00 3.33 0.00 2.86 3.23 4.17 5.00 2.56 2.04 6.90 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.41 10.00 3.12 0.00 0.00 2.27 0.00 0.00 4.55 0.00 NA 0.00 4.35 0.00 0.00 K jcn_only_AA Uch,CG10880 chr2L - chr2L_2213549_2213615 chr2L_2213558_2213615 chr2L_2213616_2213684;chr2L_2213489_2213548 100.00 100.00 100.00 100.00 100.00 99.61 99.66 100.00 100.00 100.00 100.00 99.79 98.97 100.00 99.71 100.00 99.51 100.00 100.00 100.00 100.00 100.00 100.00 99.72 100.00 100.00 100.00 99.13 99.57 100.00 99.69 99.52 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.68 100.00 100.00 100.00 99.38 100.00 100.00 99.64 99.53 99.53 100.00 99.72 99.61 99.78 100.00 K alternative_donor mys,I_chrX_7958795_7961094 chrX + chrX_7955904_7957872;chrX_7955914_7957872;chrX_7955759_7957872;chrX_7956114_7957872;chrX_7955901_7957872;chrX_7956125_7957872;chrX_7955967_7957872 chrX_7955908_7957872 chrX_7957873_7958492;chrX_7955741_7955758 1.02 1.49 0.76 0.53 0.00 0.91 1.46 1.20 0.82 1.22 0.00 0.38 0.00 1.42 0.65 0.57 0.00 0.79 0.64 0.57 0.81 0.55 2.17 2.56 2.04 1.23 1.79 2.70 0.81 2.13 0.44 0.00 0.57 0.42 1.69 1.85 1.48 1.72 1.18 1.05 1.92 1.01 1.03 1.02 1.10 1.03 2.08 0.47 1.15 3.03 2.00 1.69 0.89 0.00 0.56 0.00 2.53 0.77 K jcn_only_AD CG14005,I_chr2L_5801609_5801677 chr2L - chr2L_5801609_5801677 chr2L_5801609_5801671 chr2L_5801509_5801608;chr2L_5801678_5801777 95.00 NA NA NA NA 86.96 NA 91.67 100.00 NA NA 100.00 NA NA NA 95.45 NA NA NA 100.00 NA NA 93.33 90.32 NA NA 95.45 NA NA 89.66 96.30 95.00 96.77 94.59 92.59 88.89 95.00 92.59 95.65 97.30 NA 90.00 NA 100.00 86.96 90.91 NA 84.38 85.71 93.10 88.00 100.00 100.00 95.00 95.00 95.83 95.45 90.00 K intron_retention CG9836,I_chr3R_4654041_4664113,I_chr3R_4749124_4756437 chr3R - chr3R_4649524_4649706 chr3R_4649523_4649524;chr3R_4649706_4649707 chr3R_4649075_4649523;chr3R_4649707_4649871 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.68 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention sli,RI_chr2R_11794739_11809143 chr2R - chr2R_11761183_11761794 chr2R_11761182_11761183;chr2R_11761794_11761795 chr2R_11761040_11761182;chr2R_11761795_11761827 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA 5.88 NA 0.00 NA NA NA NA NA 0.00 NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA K intron_retention RhoGAP5A,C_chrX_5514320_5515557 chrX - chrX_5511090_5511153 chrX_5511089_5511090;chrX_5511153_5511154 chrX_5510684_5511089;chrX_5511154_5511259 0.00 7.32 0.00 3.33 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 5.36 0.00 15.38 1.39 3.57 4.44 0.00 1.75 2.56 26.67 0.00 0.00 0.00 0.00 0.00 0.00 2.17 2.00 3.64 3.49 3.23 0.00 3.08 0.00 0.00 0.00 2.70 3.12 2.56 0.00 6.15 3.77 0.00 3.03 4.35 0.00 0.00 3.75 0.00 K intron_retention CG11357,C_chr3L_4563905_4578759 chr3L + chr3L_4551941_4552104 chr3L_4551940_4551941;chr3L_4552104_4552105 chr3L_4551002_4551940;chr3L_4552105_4553455 0.00 0.00 0.00 1.06 0.00 0.00 0.23 0.43 0.23 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette cora,I_chr2R_15125277_15130573,I_chr2R_15125940_15130208,I_chr2R_15129291_15129988 chr2R + chr2R_15125940_15130208 chr2R_15125940_15126293;chr2R_15128442_15128462;chr2R_15129291_15129678;chr2R_15129901_15129994;chr2R_15130091_15130208 chr2R_15126294_15128441;chr2R_15128463_15129290;chr2R_15129679_15129900;chr2R_15129995_15130090 chr2R_15125887_15125939;chr2R_15130209_15130308 100.00 100.00 100.00 99.80 100.00 100.00 100.00 100.00 100.00 99.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG10737 chr2R + chr2R_15062754_15063752;chr2R_15062754_15063770 chr2R_15062754_15063692 chr2R_15062592_15062753;chr2R_15063771_15063852 94.12 91.92 91.51 89.66 92.31 97.70 87.00 96.82 92.52 97.44 95.24 93.53 95.74 95.40 96.91 86.11 96.88 94.69 96.94 92.20 86.79 84.69 94.92 96.15 96.88 94.39 96.00 90.00 98.28 93.98 94.96 98.33 67.77 87.92 90.79 96.67 94.26 92.55 95.10 93.62 98.39 91.63 86.42 97.30 85.71 98.36 97.06 90.28 91.57 94.51 93.97 91.78 91.95 94.12 95.69 89.29 95.00 93.04 K intron_retention RI_chr3R_18950918_18950979,CG31457 chr3R - chr3R_18952768_18952826 chr3R_18952767_18952768;chr3R_18952826_18952827 chr3R_18952226_18952767;chr3R_18952827_18953680 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA NA NA 0.00 NA 2.38 0.00 0.00 NA 0.00 NA 0.00 8.33 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 3.85 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention Caf1,mRpS10 chr3R + chr3R_11052249_11052358 chr3R_11052248_11052249;chr3R_11052358_11052359 chr3R_11051691_11052248;chr3R_11052359_11053336 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14778,CG14780 chrX + chrX_1367204_1367268 chrX_1367203_1367204;chrX_1367268_1367269 chrX_1366909_1367203;chrX_1367269_1367730 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA 5.88 NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA 6.67 NA NA NA NA NA 0.00 0.00 5.26 0.00 NA 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 0.00 NA NA 0.00 NA K jcn_only_AD Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4833234_4834454;chrX_4833203_4834454;chrX_4833308_4834454;chrX_4833338_4834454 chrX_4833364_4834454 chrX_4834455_4834880;chrX_4833197_4833202 7.07 NA 9.09 8.11 14.29 NA 8.33 7.32 6.82 4.17 NA 5.56 3.85 11.76 NA 12.50 6.25 NA 12.50 1.96 NA 4.55 NA NA NA NA NA NA NA 3.23 8.33 NA 6.78 9.09 NA NA NA NA NA NA NA 2.70 9.09 NA NA NA NA 3.23 11.11 NA NA NA NA NA 4.76 NA NA NA K intron_retention Itp-r83A chr3R + chr3R_1356653_1356709 chr3R_1356652_1356653;chr3R_1356709_1356710 chr3R_1356497_1356652;chr3R_1356710_1356863 0.00 0.00 0.00 3.33 0.00 NA 3.70 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 5.56 0.00 4.00 0.00 0.00 0.00 15.38 0.00 5.00 17.65 5.26 NA 11.11 0.00 5.56 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 10.53 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention CG1637 chrX - chrX_10767513_10767577 chrX_10767512_10767513;chrX_10767577_10767578 chrX_10767169_10767512;chrX_10767578_10767741 6.67 NA NA 11.11 NA NA NA NA 9.09 NA NA 10.53 NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA 5.88 NA NA NA NA NA NA 0.00 NA NA NA 14.29 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD hppy,I_chr2R_15066378_15066915,I_chr2R_15105700_15106080,I_chr2R_15106144_15108248 chr2R + chr2R_15066304_15067003;chr2R_15066378_15067003;chr2R_15066243_15067003 chr2R_15066358_15067003 chr2R_15067004_15067015;chr2R_15066237_15066242 3.30 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA 0.00 3.57 NA NA NA NA 13.04 6.90 NA NA NA NA NA NA NA NA 9.52 NA 4.55 NA NA NA 3.03 NA NA NA 2.86 12.50 NA 6.45 NA NA NA 14.29 NA NA NA N intron_retention nimC1,I_chr2L_13975880_13975977 chr2L - chr2L_13976221_13976476 chr2L_13976220_13976221;chr2L_13976476_13976477 chr2L_13971741_13976220;chr2L_13976477_13976753 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA 30.43 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention Psn,RI_chr3L_20430213_20430358 chr3L + chr3L_20427346_20427647 chr3L_20427345_20427346;chr3L_20427647_20427648 chr3L_20427187_20427345;chr3L_20427648_20427812 78.72 83.12 74.07 73.44 75.68 68.00 87.27 78.18 76.19 70.97 78.12 81.58 78.79 81.58 78.57 94.44 77.14 94.12 86.21 80.56 88.24 86.27 77.55 81.71 73.58 78.05 80.56 81.25 92.68 86.67 78.95 81.63 83.72 78.12 82.50 89.36 78.08 71.67 78.72 68.09 80.95 72.62 78.12 82.09 78.48 75.36 75.34 80.00 81.97 78.18 75.90 78.12 85.11 81.36 85.71 75.00 74.32 78.57 K intron_retention Syx13,RI_chr3L_13037959_13038017,CG11279 chr3L + chr3L_13038696_13039316 chr3L_13038695_13038696;chr3L_13039316_13039317 chr3L_13038018_13038695;chr3L_13039317_13039993 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL15 chr3LHet + chr3LHet_2397992_2398049 chr3LHet_2397991_2397992;chr3LHet_2398049_2398050 chr3LHet_2397802_2397991;chr3LHet_2398050_2398052 50.00 43.75 51.28 45.61 50.00 52.00 22.15 50.00 54.46 54.55 53.85 46.94 44.90 46.34 61.11 55.88 45.16 30.00 42.86 56.00 29.41 21.33 65.31 52.50 39.39 30.43 78.57 87.50 53.33 52.00 48.08 41.94 54.55 48.53 50.00 74.42 65.22 50.00 58.82 55.10 41.18 46.67 50.00 34.21 50.00 45.28 48.72 48.28 54.84 55.32 40.74 53.57 79.17 54.29 50.00 43.18 57.89 62.86 K alternative_acceptor CG17683,I_chr2R_18774_18869,I_chr2R_19002_19060 chr2R + chr2R_19002_19064 chr2R_19002_19060 chr2R_18902_19001;chr2R_19065_19124 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 97.56 100.00 100.00 100.00 100.00 100.00 94.12 95.83 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 95.00 100.00 100.00 94.12 100.00 92.86 100.00 96.55 100.00 100.00 96.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG9776,CG9772 chr3R - chr3R_161636_161730 chr3R_161668_161730 chr3R_161731_161797;chr3R_161571_161635 99.55 98.26 99.39 100.00 100.00 99.17 99.54 99.07 99.69 100.00 100.00 99.17 100.00 100.00 100.00 99.32 100.00 100.00 100.00 99.38 100.00 100.00 99.52 99.54 100.00 100.00 98.81 100.00 100.00 99.08 98.91 100.00 100.00 99.50 98.88 98.92 98.75 98.82 99.60 99.11 100.00 99.65 100.00 99.35 99.20 98.09 99.50 98.96 99.55 100.00 99.55 100.00 100.00 99.24 99.40 98.41 100.00 100.00 K intron_retention dwg,RI_chrX_2622297_2622430,RI_chrX_2622435_2622577,RI_chrX_2627170_2627263 chrX + chrX_2622968_2623029 chrX_2622967_2622968;chrX_2623029_2623030 chrX_2622578_2622967;chrX_2623030_2623121 0.00 0.00 0.00 4.76 NA NA NA 0.00 0.00 0.00 0.00 2.94 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 6.25 0.00 10.71 18.18 3.45 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 3.77 2.50 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 K intron_retention Nup98 chr3R - chr3R_19602830_19603159 chr3R_19602829_19602830;chr3R_19603159_19603160 chr3R_19602654_19602829;chr3R_19603160_19603342 6.38 0.00 5.77 7.87 5.26 7.69 8.82 10.11 4.85 7.69 8.57 6.02 16.67 1.89 2.00 8.96 4.88 5.00 11.90 9.52 7.69 2.13 2.53 3.03 11.76 8.70 5.80 7.69 24.14 6.25 5.77 7.14 12.50 6.33 0.00 6.38 3.85 0.00 3.03 4.84 8.00 7.41 4.65 8.89 0.00 5.13 8.33 4.17 5.13 16.36 8.00 7.14 18.75 0.00 5.00 7.69 9.76 6.45 K jcn_only_AA plexA,I_chr4_1035140_1035208,I_chr4_1035153_1035403,RI_chr4_1036247_1047588,RI_chr4_1040642_1047395,RF_chr4_1044307_1047399 chr4 - chr4_1035140_1035208 chr4_1035153_1035208 chr4_1035209_1035277;chr4_1035081_1035139 99.14 98.92 100.00 99.41 100.00 100.00 96.72 98.96 97.46 96.67 95.89 97.21 100.00 100.00 95.50 99.42 100.00 100.00 98.46 99.47 100.00 100.00 100.00 100.00 100.00 98.61 99.19 100.00 100.00 96.61 98.51 97.62 100.00 97.70 96.67 100.00 98.65 100.00 97.56 96.00 100.00 98.94 96.88 98.75 100.00 100.00 100.00 95.00 94.71 97.32 98.25 100.00 100.00 98.48 99.14 98.99 97.12 100.00 K mutually_exclusive Pkn,EI_chr2R_5143544_5143611,CI_chr2R_5143544_5146344,I_chr2R_5171635_5172166 chr2R - chr2R_5143215_5144914,chr2R_5145566_5146344 chr2R_5143215_5143333,chr2R_5143544_5146344 chr2R_5144915_5145565 chr2R_5143334_5143543 chr2R_5143018_5143214;chr2R_5146345_5146444 0.00 NA 0.00 0.00 NA NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA 0.00 14.29 0.00 0.00 NA 0.00 0.00 16.67 0.00 NA NA 0.00 0.00 0.00 0.00 12.50 0.00 0.00 50.00 NA 0.00 NA 33.33 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA 0.00 K intron_retention Tsp42Ee,RI_chr2R_2904593_2904783 chr2R + chr2R_2904593_2904783 chr2R_2904592_2904593;chr2R_2904783_2904784 chr2R_2904518_2904592;chr2R_2904784_2904880 99.93 99.93 99.93 100.00 99.93 100.00 100.00 99.96 100.00 99.87 99.86 99.96 99.92 99.92 99.93 99.95 100.00 99.92 100.00 99.83 99.93 99.85 99.95 99.95 100.00 100.00 99.94 99.74 100.00 99.91 99.85 99.75 99.65 99.86 99.56 100.00 99.95 99.93 99.94 99.58 99.90 99.96 100.00 99.95 99.79 99.93 99.93 99.89 99.85 99.84 99.93 99.92 100.00 99.89 99.94 99.93 100.00 99.94 K alternative_donor CG10737 chr2R + chr2R_15060394_15060936 chr2R_15060427_15060936 chr2R_15060937_15061148;chr2R_15060217_15060393 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.40 1.18 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.48 0.84 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.37 0.00 0.78 0.62 0.37 0.00 0.42 0.00 0.00 0.42 0.00 0.00 0.00 0.62 0.87 1.03 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 K cassette NFAT,RI_chrX_13543535_13546911,I_chrX_13544101_13544542 chrX + chrX_13544101_13548816 chrX_13544101_13546911;chrX_13547539_13548816 chrX_13546912_13547538 chrX_13544001_13544100;chrX_13548817_13549237 45.83 45.83 45.00 56.14 47.06 38.89 41.46 48.48 44.79 43.40 16.28 50.60 25.58 45.16 41.18 55.36 45.16 31.71 33.33 25.49 28.57 61.90 56.67 51.11 44.12 40.62 65.00 50.00 72.73 53.85 35.14 43.48 58.62 40.91 59.26 36.67 42.17 48.78 48.61 58.00 66.67 38.30 41.38 50.91 59.09 55.56 42.86 58.33 37.04 50.00 45.65 43.75 54.55 50.00 44.00 47.83 47.06 55.56 K alternative_donor Gbeta13F,I_chrX_15754284_15755167,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15755345_15755409;chrX_15754356_15755409 chrX_15754284_15755409 chrX_15755410_15755509;chrX_15754256_15754283 90.77 92.77 90.36 92.00 90.77 91.43 92.55 90.18 88.79 89.19 90.20 80.69 75.64 85.15 90.28 92.71 90.67 90.00 90.20 90.85 92.73 94.68 95.10 81.54 91.80 86.57 91.95 89.19 89.36 87.72 91.82 91.43 83.67 90.00 91.18 82.69 91.67 94.92 91.38 84.21 92.68 87.67 83.33 93.40 88.00 88.57 93.65 86.15 89.01 89.19 91.30 92.55 94.59 92.59 90.91 94.74 96.05 91.67 K jcn_only_AA CG10277,I_chr3R_2208983_2210253,I_chr3R_2211939_2212057 chr3R + chr3R_2208983_2210702 chr3R_2208983_2210253 chr3R_2208883_2208982;chr3R_2210703_2210980 0.00 5.26 0.00 0.00 0.00 0.00 0.59 0.88 0.00 0.85 0.00 0.00 2.22 0.00 0.00 0.00 4.76 0.00 0.96 0.23 0.00 0.00 0.00 0.70 0.00 0.00 0.58 2.25 0.60 0.64 2.29 0.00 0.00 0.76 0.00 0.00 0.00 NA 0.00 0.87 0.64 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 K intron_retention CG8745 chr3L - chr3L_13858536_13859702 chr3L_13858535_13858536;chr3L_13859702_13859703 chr3L_13858417_13858535;chr3L_13859703_13860072 46.15 NA NA NA NA NA NA 54.55 30.77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 28.57 NA NA NA 77.78 46.15 NA NA NA NA NA NA NA 12.50 46.15 K intron_retention noncoding_7780,CG30120,CG5189 chr2R + chr2R_14334211_14334268 chr2R_14334210_14334211;chr2R_14334268_14334269 chr2R_14334117_14334210;chr2R_14334269_14334314 15.07 15.38 6.45 37.50 5.00 3.33 33.33 8.70 15.38 7.69 25.00 12.82 NA NA 6.67 NA 0.00 0.00 22.22 15.38 0.00 16.67 21.88 14.29 15.00 21.43 NA NA 35.29 NA 19.35 14.29 35.71 15.38 14.29 30.00 21.74 9.68 15.15 41.67 50.00 11.90 22.22 NA 16.00 15.56 11.76 12.50 13.16 16.67 25.00 21.43 7.69 5.71 11.54 9.09 10.81 4.00 K jcn_only_AA Tao-1,I_chrX_19470426_19470727 chrX - chrX_19470426_19470727 chrX_19470429_19470727 chrX_19470728_19470827;chrX_19470326_19470425 98.97 98.11 99.43 97.58 98.40 100.00 98.37 98.92 99.01 98.64 98.15 99.16 99.18 99.02 99.31 98.30 100.00 99.34 99.25 98.94 99.27 99.35 98.97 99.54 98.28 98.00 98.68 100.00 100.00 99.45 100.00 98.65 99.33 100.00 99.28 98.68 98.83 98.23 98.59 99.20 97.33 100.00 100.00 97.91 98.91 98.53 98.29 98.88 99.23 100.00 98.39 97.81 97.87 98.95 99.39 100.00 99.00 98.18 K intron_retention CG9253 chr2L + chr2L_21143504_21143563 chr2L_21143503_21143504;chr2L_21143563_21143564 chr2L_21143322_21143503;chr2L_21143564_21143822 0.00 0.00 0.00 3.47 0.00 0.00 0.70 1.05 2.11 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.92 0.00 0.61 0.00 0.00 1.05 0.00 0.00 0.00 2.80 1.95 0.00 0.00 0.45 0.00 0.00 1.05 0.00 1.50 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.32 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 K intron_retention CG12384,I_chr2R_7245925_7246462,RI_chr2R_7245930_7246231,RI_chr2R_7245930_7246259 chr2R - chr2R_7245777_7245840 chr2R_7245776_7245777;chr2R_7245840_7245841 chr2R_7245312_7245776;chr2R_7245841_7245924 0.00 0.00 0.00 1.17 0.00 0.00 0.00 0.34 0.30 0.00 0.00 0.62 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 1.05 0.00 1.34 0.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.57 0.00 0.95 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention aPKC,I_chr2R_10833552_10833654,RI_chr2R_10849347_10850391 chr2R - chr2R_10832733_10833654 chr2R_10832732_10832733;chr2R_10833654_10833655 chr2R_10832714_10832732;chr2R_10833655_10833754 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 NA NA 93.33 91.67 100.00 NA 100.00 NA NA NA 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 K intron_retention Hrb87F chr3R - chr3R_9484020_9484183 chr3R_9484019_9484020;chr3R_9484183_9484184 chr3R_9483046_9484019;chr3R_9484184_9484235 0.97 0.44 0.61 8.98 0.53 1.55 2.17 3.76 0.68 0.57 0.00 1.99 2.35 1.81 2.71 3.19 2.92 1.23 1.47 0.98 0.00 1.25 1.04 1.11 0.82 1.92 1.13 1.55 0.33 0.45 2.11 0.74 0.77 2.15 0.00 1.52 0.68 0.48 0.97 0.76 0.56 1.47 0.00 0.66 0.31 0.55 0.48 0.42 1.39 0.94 0.98 1.32 1.28 0.71 2.05 0.82 0.83 0.53 K intron_retention CG8051,I_chrX_19198128_19201351 chrX - chrX_19198128_19199326 chrX_19198127_19198128;chrX_19199326_19199327 chrX_19198028_19198127;chrX_19199327_19199358 13.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 11.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA NA 16.67 NA 15.38 NA NA NA NA NA NA NA K alternative_acceptor CG7861 chr2R + chr2R_1931884_1931956 chr2R_1931884_1931938 chr2R_1931601_1931883;chr2R_1931957_1932469 100.00 100.00 100.00 97.44 100.00 100.00 97.06 100.00 100.00 100.00 100.00 97.62 95.65 100.00 100.00 100.00 100.00 100.00 100.00 98.25 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 97.06 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.90 100.00 100.00 97.87 96.15 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention cwo,noncoding_15870,chr3R_6215619_6216520.0,chr3R_6216827_6217291.0,chr3R_6217556_6219555.0,chr3R_6219984_6221958.0 chr3R + chr3R_6215160_6223084 chr3R_6215159_6215160;chr3R_6223084_6223085 chr3R_6214846_6215159;chr3R_6223085_6223406 50.00 NA NA NA NA NA 21.43 50.00 44.44 NA NA 47.37 NA NA NA 53.33 NA NA NA 46.15 NA 51.72 63.16 68.75 50.00 NA 50.00 NA 50.00 61.11 NA NA 63.16 70.00 53.33 40.00 47.06 53.33 47.06 65.38 69.23 42.11 NA 41.18 NA 33.33 63.64 47.83 55.56 72.73 70.59 NA 54.55 NA 46.15 NA NA 50.00 K alternative_acceptor ana2,MrgBP,CG8258 chr2R - chr2R_4786818_4786871 chr2R_4786821_4786871 chr2R_4786872_4787717;chr2R_4786228_4786817 25.00 30.43 20.00 17.39 30.77 16.67 29.17 24.24 28.57 NA 23.08 31.03 22.22 27.78 22.22 25.93 5.56 25.00 20.00 22.73 30.77 25.00 22.73 29.63 26.67 13.33 16.67 33.33 NA 29.41 7.69 21.05 22.22 20.83 26.67 23.53 24.24 50.00 21.74 33.33 30.00 22.86 30.77 18.75 40.00 30.00 25.93 25.00 26.32 23.08 33.33 36.36 21.74 26.92 35.00 27.27 28.57 23.81 K alternative_donor Cctgamma chr3R + chr3R_12473409_12473557;chr3R_12473318_12473557;chr3R_12473479_12473557;chr3R_12473420_12473557;chr3R_12473424_12473557 chr3R_12473464_12473557 chr3R_12473558_12473651;chr3R_12473311_12473317 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 4.76 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Pros35,I_chr2L_10222136_10222201,I_chr2L_10222136_10222259,CG4908 chr2L + chr2L_10222136_10222201 chr2L_10222144_10222201 chr2L_10222202_10222270;chr2L_10222075_10222135 99.50 99.64 99.31 99.43 99.30 99.66 99.69 99.31 99.80 98.97 100.00 99.55 99.71 99.15 99.32 99.42 99.72 99.42 98.60 99.59 99.47 99.50 99.10 99.69 99.72 99.45 99.80 99.75 99.79 99.82 99.19 99.18 100.00 99.64 99.71 99.28 99.24 99.08 99.86 99.65 99.66 99.33 98.33 99.00 99.41 99.50 99.57 100.00 99.82 99.17 99.60 98.95 99.35 98.91 99.74 99.69 99.65 99.45 K alternative_acceptor tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_563485_565232;chr3R_563461_565232 chr3R_563503_565232 chr3R_565233_565290;chr3R_563195_563460 80.00 85.00 88.24 97.44 73.68 64.71 63.64 86.67 86.89 76.92 62.50 90.48 85.00 81.82 85.00 80.00 87.50 84.21 80.00 86.67 83.33 84.21 63.16 66.67 81.82 85.71 NA 88.89 71.43 66.67 89.29 80.00 80.00 74.29 NA 72.73 85.71 71.43 78.57 85.71 75.00 82.61 78.57 85.71 72.73 66.67 NA 73.33 88.37 83.33 69.23 94.44 63.64 NA 96.43 77.78 75.00 75.00 K alternative_acceptor CG7185 chr3L - chr3L_8304813_8304873 chr3L_8304816_8304873 chr3L_8304874_8305173;chr3L_8304747_8304812 98.15 97.10 98.75 98.36 97.92 96.92 100.00 97.10 100.00 100.00 97.67 98.00 100.00 96.30 98.53 98.15 97.73 98.61 98.33 96.99 98.44 98.78 97.67 100.00 98.61 100.00 97.67 97.56 95.95 98.08 97.33 97.73 98.26 97.47 98.75 96.47 97.18 98.61 99.00 95.83 98.86 98.68 98.04 96.97 97.28 97.64 99.01 98.48 98.51 96.91 98.39 98.15 98.75 97.03 98.57 98.88 94.67 97.81 K intron_retention shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9754481_9755660 chr2R_9754480_9754481;chr2R_9755660_9755661 chr2R_9754381_9754480;chr2R_9755661_9755854 0.00 0.00 0.48 0.77 0.00 0.42 0.00 0.84 0.22 0.00 0.00 0.55 4.23 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.29 0.48 0.00 0.00 0.00 0.38 0.70 0.45 0.27 0.93 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.60 0.28 0.00 0.00 0.00 0.83 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD CG33936,CG33937,RI_chr3R_5183458_5183705 chr3R + chr3R_5183178_5183705;chr3R_5180806_5183705 chr3R_5182946_5183705 chr3R_5183706_5183805 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG7945,RI_chr3L_15515681_15516932,RI_chr3L_15516824_15516932 chr3L - chr3L_15515603_15516067 chr3L_15515603_15515659;chr3L_15515681_15516067 chr3L_15515660_15515680 chr3L_15515581_15515602;chr3L_15516068_15516564 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N alternative_acceptor unc-5,E_chr2R_11238100_11240757,I_chr2R_11252444_11252570 chr2R + chr2R_11246255_11247919 chr2R_11246255_11247482 chr2R_11246084_11246254;chr2R_11247920_11247973 3.45 5.56 4.55 6.90 0.00 8.33 9.09 0.00 3.85 0.00 0.00 4.35 NA NA 0.00 9.09 NA 66.67 0.00 5.26 0.00 2.60 1.96 0.00 0.00 6.67 0.00 9.09 8.70 3.45 3.85 NA 6.67 3.45 0.00 4.76 3.33 0.00 2.86 6.67 NA 4.65 NA 3.12 6.67 0.00 0.00 3.85 3.85 5.00 2.50 0.00 0.00 0.00 4.35 NA NA 5.26 K intron_retention CG32626 chrX - chrX_13725134_13725200 chrX_13725133_13725134;chrX_13725200_13725201 chrX_13724782_13725133;chrX_13725201_13725311 0.79 0.50 1.20 1.57 0.00 0.79 0.92 0.86 1.35 0.00 1.27 1.34 0.00 0.00 0.00 0.54 0.00 1.32 1.53 0.58 0.00 1.06 0.71 0.78 0.00 0.79 0.44 3.20 1.85 0.00 1.35 0.00 0.43 0.96 1.45 1.20 0.32 1.00 0.89 1.13 1.35 1.05 0.00 0.35 0.75 0.87 1.46 1.69 2.11 0.47 1.02 0.00 0.53 0.00 0.61 0.37 0.63 1.92 K intron_retention CG2747,noncoding_15264,RI_chr3R_3843183_3843929 chr3R - chr3R_3842728_3843929 chr3R_3842727_3842728;chr3R_3843929_3843930 chr3R_3842585_3842727;chr3R_3843930_3844029 0.00 0.00 0.00 3.70 0.00 0.00 1.64 0.00 1.19 3.03 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 1.92 0.00 2.86 0.00 0.00 0.00 0.00 0.00 2.38 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.06 K intron_retention CG30090,RI_chr2R_11577574_11577625 chr2R + chr2R_11577672_11577758 chr2R_11577671_11577672;chr2R_11577758_11577759 chr2R_11577626_11577671;chr2R_11577759_11577937 3.57 2.38 3.57 12.20 0.00 0.00 6.49 6.06 4.17 NA 0.00 5.56 5.08 6.82 0.00 10.00 0.00 4.00 8.89 1.44 0.00 7.89 10.53 0.00 0.00 0.00 8.70 NA 5.26 3.70 3.92 7.41 0.00 2.44 0.00 6.67 0.00 0.00 4.65 4.76 0.00 2.27 0.00 0.00 0.00 6.25 3.92 0.00 5.10 0.00 0.00 0.00 4.17 0.00 3.77 5.00 2.44 6.67 K jcn_only_AA dnc,I_chrX_3150245_3150319,I_chrX_3150351_3152643 chrX + chrX_3150245_3152643;chrX_3150245_3150319 chrX_3150245_3152646 chrX_3150235_3150244;chrX_3152647_3152733 16.18 NA 12.12 20.00 NA 20.00 11.54 22.58 NA NA NA 19.23 25.00 NA 15.15 20.51 NA NA 7.69 22.73 NA NA NA NA NA NA NA NA NA NA 16.00 NA NA 10.26 NA NA NA NA NA NA NA 5.88 NA NA NA NA NA NA 16.36 NA NA NA NA NA 13.64 NA NA NA K alternative_donor rin,I_chr3R_9476825_9476895 chr3R + chr3R_9472923_9473104;chr3R_9473004_9473104 chr3R_9472992_9473104 chr3R_9473105_9473268;chr3R_9472709_9472922 0.00 0.00 0.00 0.00 2.13 1.54 0.61 0.44 0.38 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 2.17 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.70 0.00 NA 0.67 0.00 0.00 0.00 K jcn_only_AA RI_chrX_6482284_6482336,Pat1,I_chrX_6489999_6490050,APC7 chrX + chrX_6489505_6489571 chrX_6489505_6489568 chrX_6489347_6489504;chrX_6489572_6489993 99.09 100.00 98.94 98.64 97.80 98.81 98.39 99.40 99.05 98.28 97.73 98.77 98.23 98.88 98.36 100.00 98.82 99.18 98.97 100.00 98.10 99.23 100.00 96.43 98.51 99.02 99.22 98.95 100.00 97.80 99.09 100.00 100.00 97.89 98.57 100.00 100.00 100.00 99.09 100.00 100.00 99.49 98.78 100.00 95.06 100.00 100.00 100.00 99.44 100.00 95.97 98.51 100.00 100.00 97.44 100.00 100.00 98.26 K intron_retention Pax,RI_chr2L_19404683_19426205,RI_chr2L_19404823_19409403 chr2L - chr2L_19410414_19410479 chr2L_19410413_19410414;chr2L_19410479_19410480 chr2L_19410248_19410413;chr2L_19410480_19410643 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.90 1.52 0.65 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG17683,I_chr2R_18774_18869 chr2R + chr2R_18630_18692 chr2R_18630_18680 chr2R_18552_18629;chr2R_18693_18747 96.88 NA NA 92.86 NA NA 100.00 88.89 100.00 NA NA 100.00 NA NA NA 91.67 NA NA 100.00 91.67 NA NA 91.67 NA NA NA 100.00 NA NA NA 91.67 NA NA 93.75 80.00 NA NA NA NA 100.00 NA 100.00 NA 100.00 NA NA 87.50 NA 93.33 100.00 88.89 NA NA NA NA 100.00 100.00 NA N jcn_only_AA CG31431 chr3R + chr3R_17697863_17697938;chr3R_17697863_17697989 chr3R_17697863_17698131 chr3R_17697704_17697862;chr3R_17698132_17698247 100.00 100.00 100.00 100.00 100.00 100.00 69.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.79 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_150069_150307;chr4_150069_150180;chr4_150069_150378;chr4_150069_150353;chr4_150069_150295 chr4_150069_150205 chr4_149969_150068;chr4_150379_150379 4.71 NA NA 7.02 6.67 4.76 7.32 2.47 6.52 NA NA 4.17 6.67 14.81 4.17 6.67 4.65 0.00 0.00 7.41 NA NA NA NA NA 3.85 NA NA NA NA 5.13 NA NA 3.90 NA NA NA NA NA NA NA 3.51 5.00 NA NA NA NA NA 1.37 NA NA NA NA NA 2.70 NA NA NA K intron_retention RpL7A,I_chrX_6426455_6427156,I_chrX_6426579_6427002 chrX - chrX_6426455_6426522 chrX_6426454_6426455;chrX_6426522_6426523 chrX_6426355_6426454;chrX_6426523_6426578 0.00 0.00 0.00 0.04 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.20 0.45 0.00 0.00 0.07 0.00 0.00 0.07 0.00 0.04 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.04 0.05 0.03 0.00 0.00 0.05 0.00 0.07 0.11 0.00 K jcn_only_AA wun,I_chr2R_5291118_5291211,I_chr2R_5297151_5300729,I_chr2R_5297159_5300813 chr2R - chr2R_5290341_5291211 chr2R_5291118_5291211 chr2R_5291212_5291311;chr2R_5290161_5290340 1.29 1.69 0.00 1.96 0.00 0.00 10.00 0.00 0.00 1.75 14.29 0.00 0.00 0.00 0.00 0.00 3.03 12.00 3.12 1.79 4.35 7.59 0.86 1.09 1.08 NA 1.20 2.33 2.86 0.00 5.56 2.94 1.89 1.72 1.18 11.90 0.85 0.00 1.35 0.00 1.92 0.00 3.57 1.30 1.27 0.00 3.19 2.56 3.45 1.28 3.19 0.00 0.00 1.27 2.13 1.35 0.00 0.00 K alternative_donor Eip78C,I_chr3L_21255841_21256095 chr3L + chr3L_21233904_21256095 chr3L_21255841_21256095 chr3L_21256096_21256195;chr3L_21233887_21233903 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 20.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA K intron_retention CG13760 chrX - chrX_2478969_2479030 chrX_2478968_2478969;chrX_2479030_2479031 chrX_2478700_2478968;chrX_2479031_2479344 0.00 4.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 3.85 2.30 0.00 17.65 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 2.78 0.00 0.00 0.00 2.25 2.13 3.57 3.12 2.94 0.00 0.00 0.00 3.33 2.08 0.00 7.14 2.27 0.00 0.00 0.00 0.00 0.00 0.00 3.92 0.00 0.00 K intron_retention I_chr2L_8029734_8029787,Cka,CG7429 chr2L + chr2L_8036299_8036357 chr2L_8036298_8036299;chr2L_8036357_8036358 chr2L_8035821_8036298;chr2L_8036358_8036576 0.00 0.00 0.00 1.27 0.00 0.00 2.33 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 1.82 0.00 0.00 0.00 1.68 1.92 2.59 1.41 0.00 0.00 0.00 2.33 0.00 0.00 1.61 0.00 0.00 0.78 0.00 1.85 0.00 3.06 1.67 0.00 2.75 4.76 1.68 0.00 0.00 0.00 1.72 0.00 0.00 3.06 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 1.45 K intron_retention Irbp chr3R + chr3R_7236841_7236963 chr3R_7236840_7236841;chr3R_7236963_7236964 chr3R_7236778_7236840;chr3R_7236964_7238112 100.00 97.06 100.00 100.00 95.45 100.00 100.00 97.30 98.44 96.67 96.88 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.44 100.00 100.00 96.88 98.31 100.00 100.00 100.00 100.00 97.14 100.00 97.83 96.97 100.00 98.28 100.00 100.00 98.78 98.04 100.00 100.00 98.21 100.00 100.00 100.00 100.00 97.96 98.39 98.18 97.30 100.00 97.87 100.00 97.73 95.95 97.44 K cassette Gpo-1,I_chr2R_11747621_11747699,EI_chr2R_11747445_11747699,I_chr2R_11749758_11750187,I_chr2R_11756325_11756380 chr2R - chr2R_11747445_11747699 chr2R_11747445_11747511;chr2R_11747625_11747699 chr2R_11747512_11747624 chr2R_11747345_11747444;chr2R_11747700_11747768 100.00 98.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.48 97.78 100.00 100.00 100.00 100.00 98.70 99.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.89 100.00 99.07 100.00 100.00 100.00 99.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CtBP chr3R + chr3R_8847365_8850545 chr3R_8847365_8850521 chr3R_8847142_8847364;chr3R_8850546_8850586 67.43 NA NA NA NA NA NA 90.00 75.00 NA NA 68.18 NA NA NA NA NA NA NA 63.64 NA 71.43 NA 54.55 NA NA NA NA 50.00 NA 88.89 NA 90.91 NA NA NA 35.71 NA NA 72.73 NA 64.29 NA 60.00 NA 90.00 NA 66.67 56.25 NA 75.00 NA NA NA NA NA NA 53.85 K intron_retention lark,noncoding_11093,REI_chr3L_7332718_7333975,RI_chr3L_7334219_7334452 chr3L + chr3L_7333871_7333975 chr3L_7333870_7333871;chr3L_7333975_7333976 chr3L_7333152_7333870;chr3L_7333976_7334075 6.12 4.81 10.87 9.30 9.30 12.50 0.00 18.52 7.00 6.12 13.04 6.98 0.00 0.00 6.45 0.00 10.26 12.77 8.16 9.00 6.25 7.78 4.38 5.30 4.44 10.42 5.00 9.76 7.89 6.02 7.14 4.88 5.07 5.38 4.82 2.90 4.29 4.35 4.88 6.78 3.70 7.59 7.32 9.68 5.86 4.46 4.88 8.77 8.70 2.38 7.04 7.02 4.40 3.23 8.51 3.73 0.00 4.79 K intron_retention Sap47,I_chr3R_11761076_11761674,I_chr3R_11761436_11761674,F_chr3R_11761635_11761698,E_chr3R_11761635_11761703 chr3R + chr3R_11761307_11761698 chr3R_11761306_11761307;chr3R_11761698_11761699 chr3R_11761299_11761306;chr3R_11761699_11761774 100.00 100.00 100.00 97.44 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 96.00 100.00 100.00 100.00 96.77 100.00 100.00 98.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 93.33 100.00 100.00 96.30 94.44 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 K intron_retention robo chr2R - chr2R_18587540_18587595 chr2R_18587539_18587540;chr2R_18587595_18587596 chr2R_18587307_18587539;chr2R_18587596_18587684 94.25 NA NA NA NA NA 100.00 NA 91.67 NA NA NA NA NA NA NA NA 92.86 NA NA NA 95.65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CanB2,CG12825 chr2R + chr2R_3675038_3675104 chr2R_3675038_3675095 chr2R_3674969_3675037;chr2R_3675105_3675170 100.00 100.00 99.50 99.38 100.00 100.00 100.00 100.00 100.00 98.97 100.00 99.66 100.00 99.40 100.00 99.65 100.00 100.00 99.45 99.77 98.90 99.31 99.46 100.00 99.19 99.44 100.00 99.15 99.19 100.00 100.00 98.72 100.00 100.00 98.54 99.38 99.45 100.00 99.50 99.59 100.00 100.00 100.00 98.94 99.43 100.00 100.00 100.00 99.45 100.00 100.00 100.00 97.95 100.00 100.00 100.00 99.51 99.65 K mutually_exclusive CG11873,I_chr3R_24900749_24922953,GM04590 chr3R + chr3R_24888870_24900684,chr3R_24900749_24922953 chr3R_24888870_24889524,chr3R_24890335_24922953 chr3R_24900685_24900748 chr3R_24889525_24890334 chr3R_24888832_24888869;chr3R_24922954_24923053 100.00 100.00 96.97 100.00 100.00 100.00 98.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 97.96 97.06 100.00 97.44 98.55 100.00 100.00 98.15 100.00 100.00 100.00 97.73 96.55 96.00 98.48 100.00 100.00 100.00 98.48 100.00 100.00 100.00 100.00 100.00 98.41 100.00 98.46 100.00 98.31 100.00 96.77 100.00 99.01 100.00 100.00 97.73 100.00 100.00 90.00 100.00 100.00 100.00 96.43 K alternative_donor Ten-a chrX + chrX_12097912_12098171;chrX_12097945_12098171;chrX_12098018_12098171;chrX_12098030_12098171 chrX_12098012_12098171 chrX_12098172_12098306;chrX_12097907_12097911 0.00 NA 0.00 NA NA NA NA 0.00 25.00 NA NA NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA 20.00 0.00 NA 0.00 NA NA NA NA NA NA NA K intron_retention Hel25E,I_chr2L_5540301_5540396 chr2L - chr2L_5540110_5540168 chr2L_5540109_5540110;chr2L_5540168_5540169 chr2L_5539707_5540109;chr2L_5540169_5540300 0.23 0.00 0.93 0.80 0.00 0.78 0.00 0.56 0.23 0.00 0.00 0.12 0.29 0.26 0.41 0.00 0.00 0.00 0.66 0.53 0.00 0.00 0.95 0.48 1.12 0.60 1.32 2.25 0.47 0.00 0.00 0.44 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.24 0.61 0.00 0.00 0.24 1.22 0.00 0.37 1.45 0.18 0.00 0.00 0.23 0.20 0.71 0.38 0.00 K alternative_donor CG8839,I_chr2R_8229288_8229488,I_chr2R_8229288_8231538 chr2R - chr2R_8229288_8231968;chr2R_8229288_8231964;chr2R_8229288_8231966 chr2R_8229288_8232025 chr2R_8229188_8229287;chr2R_8232026_8232112 87.31 89.09 87.18 88.94 88.89 89.41 86.26 92.16 88.62 77.78 91.51 89.52 85.00 88.24 88.67 86.62 87.96 87.60 91.61 86.55 88.17 89.66 86.21 89.86 86.44 89.58 84.78 85.07 81.94 86.67 90.53 86.76 85.29 87.31 80.00 86.67 79.37 86.36 87.18 90.79 81.82 88.72 84.55 79.45 85.37 88.04 84.44 81.13 87.80 90.00 83.64 86.44 89.09 93.33 91.52 90.38 87.32 80.00 K jcn_only_AA CG14767,RI_chr2R_4609761_4610761,RI_chr2R_4610372_4610761 chr2R - chr2R_4607538_4610761 chr2R_4609761_4610761 chr2R_4610762_4610861;chr2R_4607438_4607537 0.00 0.33 0.23 0.00 0.00 0.23 1.00 0.17 0.10 1.51 0.00 0.00 0.28 0.00 0.00 0.18 0.00 0.28 0.00 0.86 0.00 0.00 0.21 0.25 0.00 0.82 0.12 0.15 0.00 0.00 1.48 0.00 0.00 0.33 0.24 0.00 0.10 0.59 0.21 0.24 0.00 0.12 0.00 0.00 0.00 0.38 0.00 0.77 0.14 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 K intron_retention CG7011 chr3L - chr3L_15154200_15154264 chr3L_15154199_15154200;chr3L_15154264_15154265 chr3L_15153969_15154199;chr3L_15154265_15154472 7.14 3.92 1.82 8.41 5.56 4.76 9.43 9.64 5.00 8.33 11.90 7.89 5.00 6.25 3.03 15.91 7.14 0.00 10.42 7.53 9.09 14.58 5.13 0.00 5.13 8.00 8.82 15.62 8.96 6.12 6.38 16.67 8.77 6.94 10.20 6.15 4.55 4.76 1.35 15.00 6.48 12.82 2.70 19.35 15.00 7.14 5.33 16.88 10.14 8.33 2.50 7.69 7.81 1.47 3.28 4.35 2.11 11.11 K jcn_only_AD Aats-val,I_chr2R_9088330_9088393,I_chr2R_9088412_9088502 chr2R + chr2R_9088330_9088502 chr2R_9088412_9088502 chr2R_9088503_9088602;chr2R_9088312_9088329 0.00 1.16 0.00 1.74 0.69 0.00 0.00 0.00 0.00 0.64 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.21 0.00 0.00 0.00 0.00 0.64 0.64 3.17 0.51 0.00 1.45 0.91 0.00 0.77 1.53 0.28 0.00 0.00 0.39 0.00 0.00 0.00 0.00 2.74 0.52 0.00 0.00 0.46 0.53 0.36 0.56 0.00 0.00 0.00 0.00 0.00 1.94 K jcn_only_AA CG10737 chr2R + chr2R_15062754_15063752;chr2R_15062754_15063692 chr2R_15062754_15063770 chr2R_15062592_15062753;chr2R_15063771_15063852 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention SP2637,Gint3 chr2R - chr2R_14530268_14545584 chr2R_14530267_14530268;chr2R_14545584_14545585 chr2R_14529910_14530267;chr2R_14545585_14545707 0.00 NA NA NA NA NA 4.55 NA 3.45 NA NA 5.56 NA NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 14.29 0.00 NA NA NA 0.00 NA NA 0.00 NA 7.14 NA 0.00 NA NA NA 0.00 5.88 0.00 NA 0.00 NA NA 0.00 NA 10.53 0.00 K intron_retention CG9641,I_chr2L_2986815_2987511 chr2L - chr2L_2975080_2975150 chr2L_2975079_2975080;chr2L_2975150_2975151 chr2L_2974966_2975079;chr2L_2975151_2976554 0.00 0.00 0.00 2.38 0.00 0.00 1.47 0.00 2.82 0.00 0.00 2.41 5.56 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.92 2.17 2.11 1.39 0.00 1.14 0.00 0.00 3.23 0.00 0.00 5.41 1.67 1.06 0.85 1.15 0.00 0.00 0.00 1.79 0.00 0.88 1.92 0.00 0.00 0.00 2.27 0.00 0.00 1.15 0.00 1.59 K intron_retention RpL31,CG1827 chr2R + chr2R_5475212_5475281 chr2R_5475211_5475212;chr2R_5475281_5475282 chr2R_5475113_5475211;chr2R_5475282_5475378 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.02 0.01 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.02 0.35 0.00 0.00 0.00 0.02 0.02 0.09 0.05 0.00 0.00 0.00 0.02 0.00 0.00 0.03 0.00 0.00 0.00 0.03 0.02 0.01 0.00 0.00 0.01 0.04 0.02 0.00 0.02 0.00 0.03 0.00 0.03 0.02 0.01 0.02 0.01 0.02 K intron_retention rgn chr3L + chr3L_21413463_21413564 chr3L_21413462_21413463;chr3L_21413564_21413565 chr3L_21413351_21413462;chr3L_21413565_21413789 50.00 43.40 43.33 73.68 42.42 37.04 84.62 51.22 46.15 48.15 59.09 42.42 40.74 53.12 43.18 46.34 50.00 45.45 40.00 49.18 56.67 23.81 47.17 59.52 55.56 58.62 58.33 93.33 70.83 48.15 50.00 50.00 51.43 40.00 50.00 61.29 57.14 48.57 47.54 43.10 NA 43.42 53.85 26.09 40.91 67.50 57.41 41.18 42.00 72.73 50.88 57.14 65.62 65.85 46.51 72.50 80.00 44.83 K alternative_donor CG7231 chr2L + chr2L_7985434_7985552;chr2L_7985442_7985552 chr2L_7985494_7985552 chr2L_7985553_7985768;chr2L_7985425_7985433 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA K intron_retention cdc2c,EI_chr3R_16561477_16561812,RI_chr3R_16562395_16562445 chr3R + chr3R_16561547_16561812 chr3R_16561546_16561547;chr3R_16561812_16561813 chr3R_16561320_16561546;chr3R_16561813_16561912 9.84 6.67 12.50 7.14 NA 0.00 0.00 0.00 9.52 NA NA 9.68 13.33 12.50 NA 0.00 NA NA 13.33 4.44 NA NA 9.52 14.29 NA NA 12.00 NA NA NA NA 0.00 NA 16.67 8.70 0.00 23.08 10.53 7.69 10.00 NA 7.41 0.00 26.67 NA 12.50 15.00 NA 12.50 7.41 3.12 15.38 7.69 NA 13.33 15.38 17.65 14.29 K jcn_only_AA Rbcn-3A chrX - chrX_6137848_6137905 chrX_6137866_6137905 chrX_6137906_6138157;chrX_6137623_6137847 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.32 0.00 0.27 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 K cassette CG32813 chrX + chrX_1282830_1283633 chrX_1282830_1282929;chrX_1283114_1283633 chrX_1282930_1283113 chrX_1282661_1282829;chrX_1283634_1284090 20.00 NA NA NA NA NA NA NA 18.18 NA NA NA NA NA NA NA NA NA NA 10.00 NA 50.00 NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 22.22 NA NA 25.00 NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA NA NA K intron_retention CG9894,RE_chr2L_2752712_2753371,I_chr2L_2753119_2753371,RI_chr2L_2755946_2756007 chr2L + chr2L_2752838_2753371 chr2L_2752837_2752838;chr2L_2753371_2753372 chr2L_2752820_2752837;chr2L_2753372_2753471 43.01 49.48 35.11 44.91 19.31 35.93 40.37 49.78 33.75 39.39 26.14 42.91 34.06 38.41 37.44 52.70 38.89 30.41 40.21 31.60 38.73 61.33 62.83 48.72 54.39 38.46 69.70 39.80 44.93 54.26 41.67 45.06 61.00 45.64 76.29 65.13 31.03 37.88 36.00 27.82 61.88 38.21 49.12 38.01 42.12 59.22 73.08 52.23 41.91 64.49 61.00 50.00 43.01 83.53 40.09 67.31 58.46 58.57 K intron_retention Cyp4e2,Cyp4e1 chr2R + chr2R_4332436_4332862 chr2R_4332435_4332436;chr2R_4332862_4332863 chr2R_4332244_4332435;chr2R_4332863_4332972 4.00 6.12 3.03 4.00 4.17 0.00 4.84 4.92 4.79 6.67 3.57 2.33 3.08 0.00 3.12 2.35 0.00 9.62 2.70 6.60 3.57 2.74 5.88 3.03 12.00 3.70 5.48 5.00 26.42 1.35 4.48 10.00 3.42 5.50 3.77 4.17 2.70 6.82 4.69 4.35 1.54 4.84 2.13 0.00 3.39 3.08 5.13 5.48 5.00 4.11 6.94 0.00 4.00 0.00 6.02 1.85 3.77 4.44 K alternative_donor par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,EF_chr2R_15349994_15351814,F_chr2R_15349994_15351846,noncoding_8037,I_chr2R_15350149_15350210,FI_chr2R_15350149_15351814,I_chr2R_15350437_15351814,I_chr2R_15350437_15351825,I_chr2R_15350905_15351814,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15350285_15351846;chr2R_15350149_15351846;chr2R_15350437_15351846 chr2R_15350157_15351846 chr2R_15351847_15351914;chr2R_15350068_15350148 0.00 12.50 0.00 0.00 0.00 10.00 8.33 7.69 0.00 0.00 0.00 6.67 10.00 0.00 0.00 6.25 0.00 0.00 0.00 5.56 0.00 8.33 0.00 10.00 0.00 0.00 0.00 20.00 0.00 0.00 0.00 NA 0.00 0.00 16.67 11.11 0.00 0.00 0.00 10.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 14.29 0.00 NA 0.00 NA 12.50 0.00 K intron_retention TMS1 chr3L + chr3L_16408057_16408120 chr3L_16408056_16408057;chr3L_16408120_16408121 chr3L_16407921_16408056;chr3L_16408121_16408488 0.00 0.36 0.00 1.65 0.00 0.00 0.45 0.23 0.40 0.00 0.00 0.41 0.00 0.47 0.00 0.69 0.00 0.40 0.36 0.65 0.00 0.58 0.56 0.70 0.48 0.36 1.09 2.35 0.36 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.68 0.00 0.36 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.34 0.00 0.34 0.26 1.88 K intron_retention rin,I_chr3R_9476825_9476895 chr3R + chr3R_9472923_9473104 chr3R_9472922_9472923;chr3R_9473104_9473105 chr3R_9472709_9472922;chr3R_9473105_9473268 1.14 0.00 2.27 1.19 4.17 3.03 0.61 1.72 2.94 4.55 0.00 1.46 0.00 1.82 0.00 2.20 0.00 0.00 1.50 1.09 0.00 6.12 0.00 0.00 0.00 1.22 0.00 3.57 NA 2.56 1.87 0.00 1.37 0.86 0.00 0.00 0.00 0.00 6.45 3.45 9.09 1.36 0.88 4.35 0.00 NA 0.00 10.87 0.53 0.00 5.00 2.70 0.00 NA 1.97 0.00 0.00 5.88 K cassette Doa,I_chr3R_24715823_24718923,I_chr3R_24747391_24747896 chr3R + chr3R_24715823_24726545 chr3R_24715823_24718923;chr3R_24720785_24726545 chr3R_24718924_24720784 chr3R_24715727_24715822;chr3R_24726546_24726744 34.46 37.77 28.30 37.68 32.05 36.00 53.76 31.40 38.89 35.29 33.33 32.33 27.27 38.40 31.84 30.63 33.85 27.78 38.89 34.93 32.14 35.40 39.38 40.00 43.68 33.11 39.15 28.47 25.10 25.73 32.64 21.05 23.27 35.89 36.32 43.48 37.47 35.47 38.71 22.64 34.46 35.40 28.89 36.16 27.08 32.55 34.93 21.43 35.61 23.46 37.69 45.16 27.78 30.37 35.42 32.47 36.28 14.50 K intron_retention CG42394,noncoding_15936,E_chr3R_6675742_6676058 chr3R + chr3R_6675589_6675653 chr3R_6675588_6675589;chr3R_6675653_6675654 chr3R_6675581_6675588;chr3R_6675654_6675741 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA NA 6.67 NA 0.00 0.00 0.00 1.19 NA NA NA NA NA 0.00 0.00 0.00 0.00 7.69 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K intron_retention CG1746,I_chr3R_27043646_27044664,I_chr3R_27043667_27043890,I_chr3R_27043667_27044393,RI_chr3R_27044771_27045268 chr3R - chr3R_27043667_27044664 chr3R_27043666_27043667;chr3R_27044664_27044665 chr3R_27043567_27043666;chr3R_27044665_27044764 0.00 0.00 0.07 0.07 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.19 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Ppn,F_chr3R_24347009_24347078 chr3R - chr3R_24348983_24349248 chr3R_24348982_24348983;chr3R_24349248_24349249 chr3R_24348417_24348982;chr3R_24349249_24349345 12.50 16.28 12.50 11.67 12.00 18.18 17.65 13.41 12.50 25.00 15.00 9.30 6.67 6.67 15.22 23.53 14.29 18.92 15.38 10.09 5.26 0.00 12.20 7.69 14.81 0.00 7.32 NA 31.25 NA 0.00 14.29 NA 25.00 NA 14.63 9.62 9.52 9.80 17.02 0.00 10.26 18.18 15.00 13.04 10.00 8.33 9.52 13.33 15.38 11.76 5.88 15.79 0.00 5.26 14.81 10.17 18.18 K intron_retention CG1021,I_chr3R_2217711_2231390,RI_chr3R_2217711_2231463,I_chr3R_2218465_2231390,RI_chr3R_2218465_2231463,I_chr3R_2218682_2231463,I_chr3R_2219634_2231390,I_chr3R_2231271_2231390,I_chr3R_2231285_2231463,I_chr3R_2231383_2231463 chr3R - chr3R_2231383_2231463 chr3R_2231382_2231383;chr3R_2231463_2231464 chr3R_2231283_2231382;chr3R_2231464_2231490 95.00 88.89 100.00 95.83 100.00 95.00 95.65 100.00 86.84 89.47 100.00 87.88 96.43 95.24 95.24 96.43 100.00 91.67 95.00 96.77 93.33 76.19 90.62 96.43 95.45 93.75 92.31 84.62 95.00 95.00 90.48 91.67 95.83 86.67 96.43 97.06 95.00 94.74 95.00 82.35 96.97 97.14 92.31 86.21 94.44 75.68 82.61 85.00 88.24 96.55 88.24 100.00 96.88 93.75 91.67 90.91 100.00 89.58 K jcn_only_AD Chc,RI_chrX_15728405_15729273,I_chrX_15728405_15729401,I_chrX_15728946_15729357 chrX - chrX_15728405_15729260;chrX_15728405_15729370;chrX_15728405_15729357;chrX_15728405_15729319 chrX_15728405_15729476 chrX_15728305_15728404;chrX_15729477_15729501 0.00 0.83 0.53 1.17 0.00 0.00 0.00 0.50 0.29 0.00 0.00 1.14 0.00 1.08 1.83 0.23 2.13 0.00 0.84 0.54 0.00 0.55 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.91 1.12 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.53 0.00 1.53 1.14 0.00 NA 0.00 0.00 0.92 0.43 0.00 0.62 0.00 0.00 0.00 0.56 0.00 0.00 0.00 K alternative_donor CG32772,CG6903 chrX + chrX_4803353_4803484;chrX_4803242_4803484;chrX_4803206_4803484 chrX_4803395_4803484 chrX_4803485_4803830;chrX_4803181_4803205 50.00 NA NA 50.00 NA NA 25.00 100.00 60.00 NA NA 25.00 NA 40.00 NA 50.00 NA NA 66.67 NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA 50.00 33.33 NA NA 50.00 NA NA 100.00 NA NA NA NA NA NA NA NA 14.29 K alternative_acceptor Papss chr3L + chr3L_19838529_19838634;chr3L_19838529_19838596 chr3L_19838529_19838611 chr3L_19838397_19838528;chr3L_19838635_19838730 62.20 41.67 50.00 44.44 83.33 NA 50.00 72.22 61.90 42.86 28.57 57.89 50.00 66.67 77.78 52.94 57.14 70.00 72.73 60.71 NA 83.33 66.67 61.54 63.64 50.00 50.00 42.86 75.00 70.00 61.54 NA 84.62 57.14 55.56 50.00 64.29 75.00 75.00 75.00 75.00 59.26 66.67 42.86 85.71 75.00 58.33 83.33 72.22 45.45 69.23 60.00 50.00 62.50 57.14 66.67 64.29 73.68 K alternative_acceptor jim,I_chr3L_22791582_22791898 chr3L - chr3L_22792291_22792350 chr3L_22792303_22792350 chr3L_22792351_22792548;chr3L_22791902_22792290 3.00 3.23 6.67 3.92 3.85 4.55 0.00 3.33 2.27 0.00 NA 3.85 0.00 0.00 0.00 0.00 0.00 4.17 3.85 0.00 0.00 2.78 3.39 2.70 3.23 3.45 0.00 3.45 5.56 2.78 4.76 NA 7.69 5.00 0.00 3.23 2.33 2.27 1.85 1.67 NA 4.17 6.25 2.13 0.00 4.35 3.70 6.52 0.00 4.00 4.76 0.00 0.00 0.00 0.00 6.67 0.00 7.41 K jcn_only_AD chico,I_chr2L_10246534_10246899 chr2L - chr2L_10246040_10246184;chr2L_10246040_10247024;chr2L_10246040_10246755;chr2L_10246040_10246899 chr2L_10246040_10246867 chr2L_10245878_10246039;chr2L_10247025_10247051 9.09 13.16 6.38 8.33 4.17 11.54 10.42 15.87 10.11 NA 12.12 11.69 2.56 8.82 7.89 12.82 9.38 15.00 9.62 11.24 12.90 2.33 4.29 17.39 10.00 20.00 16.33 9.76 20.00 4.55 6.25 4.00 13.16 10.17 3.23 8.51 2.90 11.32 8.77 3.70 NA 13.85 11.11 8.20 8.33 5.88 3.12 9.09 9.76 4.88 6.90 6.06 13.16 4.55 6.52 3.33 0.00 10.81 K jcn_only_AA I_chr4_247410_247797,yellow-h,R_chr4_261460_261560,I_chr4_264634_265805 chr4 + chr4_248867_249562 chr4_248867_249530 chr4_248662_248866;chr4_249563_249805 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA 97.56 NA 95.83 100.00 95.74 100.00 NA 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K intron_retention CG9588,omd chr3R - chr3R_9501459_9501522 chr3R_9501458_9501459;chr3R_9501522_9501523 chr3R_9500847_9501458;chr3R_9501523_9501849 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.04 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 4.44 2.56 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 K alternative_donor Nmda1,R_chr2R_8766216_8766562,I_chr2R_8766652_8766956,I_chr2R_8766728_8766791,I_chr2R_8766728_8767623 chr2R - chr2R_8766652_8766956 chr2R_8766652_8766727 chr2R_8766628_8766651;chr2R_8766957_8766983 50.00 NA 42.86 NA NA NA 85.71 87.50 44.44 NA NA 42.86 NA NA NA 50.00 NA NA NA 33.33 NA NA NA NA NA NA NA 93.33 NA NA 50.00 NA NA 42.86 NA NA 42.86 NA NA 83.33 NA 50.00 NA 42.86 NA NA NA NA 60.00 NA NA NA NA NA NA NA NA 50.00 K jcn_only_AD CG11163,I_chr2R_1666219_1669711 chr2R - chr2R_1666219_1670203;chr2R_1666219_1670219;chr2R_1666219_1670325;chr2R_1666219_1670281 chr2R_1666219_1669803 chr2R_1666119_1666218;chr2R_1670326_1670328 12.90 4.55 10.81 15.00 10.00 4.00 20.00 7.27 5.45 16.00 10.00 6.25 0.00 12.12 9.68 17.91 10.53 16.00 27.27 6.94 0.00 NA 7.69 21.74 NA 14.29 18.52 NA 12.90 13.04 8.51 22.58 17.24 9.09 17.39 35.00 23.81 NA NA 5.56 12.12 12.28 12.90 15.22 9.52 7.41 NA 16.22 11.11 19.05 28.57 13.64 14.29 NA 10.53 NA 28.57 14.29 K intron_retention bbc,I_chr2R_9376554_9377246,REI_chr2R_9379401_9381986 chr2R - chr2R_9375638_9378939 chr2R_9375637_9375638;chr2R_9378939_9378940 chr2R_9375479_9375637;chr2R_9378940_9379098 49.35 47.96 60.87 40.00 45.33 53.70 45.04 53.66 54.49 54.05 37.89 56.10 38.53 58.93 55.56 48.74 50.75 40.00 50.00 45.51 34.91 76.47 56.47 46.77 45.45 50.00 48.03 49.51 35.64 57.97 63.77 58.54 54.17 55.14 59.52 36.36 47.37 57.78 42.48 44.90 30.30 48.03 45.45 49.35 26.92 49.15 59.02 61.76 47.90 40.66 52.08 50.00 40.00 52.54 50.57 45.35 39.29 51.85 K jcn_only_AA Eb1,RI_chr2R_2640290_2642206,I_chr2R_2640494_2642206,I_chr2R_2641187_2642206,RI_chr2R_2641944_2642025,I_chr2R_2641954_2642206,I_chr2R_2642491_2642549 chr2R + chr2R_2641944_2642206 chr2R_2641944_2642025 chr2R_2641854_2641943;chr2R_2642207_2642306 0.41 0.28 0.19 0.16 0.00 0.00 0.20 0.35 0.69 0.45 0.74 0.38 0.66 0.75 0.00 0.23 0.22 0.19 0.20 0.41 0.18 2.09 0.33 0.44 0.73 0.67 0.63 2.22 0.79 0.60 0.90 1.24 0.94 0.00 0.16 0.94 0.39 0.62 0.33 1.36 1.39 0.26 0.25 1.45 0.81 0.46 0.21 0.84 0.31 1.51 0.51 0.44 0.00 0.13 0.30 0.75 0.12 0.00 K intron_retention I_chr2L_837379_847733,CG4291 chr2L - chr2L_852443_852498 chr2L_852442_852443;chr2L_852498_852499 chr2L_851718_852442;chr2L_852499_852571 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 5.06 0.00 0.00 0.00 0.00 6.25 7.41 22.73 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8334,I_chr3L_19870731_19870822 chr3L + chr3L_19870731_19871932 chr3L_19870730_19870731;chr3L_19871932_19871933 chr3L_19870684_19870730;chr3L_19871933_19872579 5.28 NA 4.76 8.62 0.00 4.00 10.81 8.51 4.26 NA 11.76 10.53 5.00 11.76 0.00 0.00 0.00 12.50 4.35 12.20 NA 7.32 4.35 5.56 NA 0.00 12.50 0.00 0.00 7.69 6.90 6.25 4.17 9.38 0.00 20.69 8.70 0.00 0.00 10.87 4.55 7.84 0.00 5.56 3.57 3.70 NA 6.25 0.00 NA 11.11 NA NA NA 7.14 NA NA 2.86 K intron_retention Fak56D,F_chr2R_15323055_15323097 chr2R - chr2R_15319898_15321006 chr2R_15319897_15319898;chr2R_15321006_15321007 chr2R_15319808_15319897;chr2R_15321007_15321146 2.94 0.00 0.00 10.81 0.00 0.00 0.00 7.69 1.85 33.33 11.76 2.94 0.00 0.00 0.00 15.38 NA 0.00 NA 4.44 13.33 NA 0.00 NA NA 0.00 7.69 14.29 NA NA 7.41 NA NA 8.00 NA 14.29 0.00 12.50 5.26 8.33 13.33 5.13 0.00 0.00 NA 0.00 NA 5.88 0.00 0.00 NA NA NA NA 4.35 NA NA 0.00 K intron_retention Past1,I_chr3R_8529216_8529360 chr3R + chr3R_8529216_8529360 chr3R_8529215_8529216;chr3R_8529360_8529361 chr3R_8529116_8529215;chr3R_8529361_8529460 88.89 NA NA NA NA NA NA NA NA NA NA 69.23 NA NA NA NA NA NA NA NA NA 92.31 91.67 88.89 NA NA 91.67 91.30 60.00 NA NA NA 77.78 NA NA NA 90.91 NA 75.00 94.12 100.00 78.57 NA 88.89 NA 83.33 88.89 68.75 NA NA 88.89 NA NA NA NA NA NA 100.00 K intron_retention C3G chrX - chrX_6681300_6681383 chrX_6681299_6681300;chrX_6681383_6681384 chrX_6681291_6681299;chrX_6681384_6681553 94.37 93.02 85.37 96.00 94.29 88.89 91.57 97.73 92.31 95.83 96.97 89.86 96.30 83.33 90.48 92.68 97.06 89.19 97.67 91.76 97.56 98.33 93.55 97.83 94.94 96.61 93.75 95.00 96.88 83.72 86.05 96.67 94.44 96.49 93.18 98.90 94.44 100.00 96.83 92.42 97.96 91.86 94.12 90.91 96.15 97.78 83.33 94.37 96.92 95.24 93.33 92.59 88.89 85.00 87.76 93.55 100.00 94.87 K intron_retention CG17255,I_chrX_10366177_10366615,RI_chrX_10366177_10367270 chrX - chrX_10366177_10367360 chrX_10366176_10366177;chrX_10367360_10367361 chrX_10366077_10366176;chrX_10367361_10367370 56.70 56.25 57.14 57.14 55.56 55.56 60.00 87.50 55.56 87.50 81.82 57.58 55.00 75.00 47.83 56.25 47.83 46.67 56.00 75.00 47.06 46.15 50.00 63.16 69.23 42.11 63.16 90.00 72.73 53.33 53.85 NA 56.00 67.50 56.25 NA 40.91 70.00 50.00 58.82 NA 58.54 75.00 45.45 NA 60.00 NA 62.50 63.41 60.00 57.69 45.45 NA NA 56.00 NA NA 46.15 K intron_retention qkr58E-2,I_chr2R_18305142_18305207 chr2R + chr2R_18305142_18305207 chr2R_18305141_18305142;chr2R_18305207_18305208 chr2R_18305042_18305141;chr2R_18305208_18305307 98.18 97.50 97.56 100.00 100.00 100.00 98.68 97.40 99.19 95.65 97.14 98.82 100.00 97.73 97.67 96.67 98.00 100.00 94.44 99.11 100.00 98.00 98.18 97.83 100.00 97.83 98.15 97.06 97.50 95.12 98.08 100.00 100.00 98.88 100.00 100.00 97.67 100.00 100.00 98.46 100.00 98.98 97.37 100.00 97.78 98.57 100.00 97.67 98.98 97.87 98.08 100.00 97.22 100.00 100.00 96.08 98.11 94.81 K intron_retention CG14899 chr3R - chr3R_12309506_12309589 chr3R_12309505_12309506;chr3R_12309589_12309590 chr3R_12308985_12309505;chr3R_12309590_12309923 1.85 2.01 0.00 4.46 0.00 0.00 1.98 3.85 3.09 0.00 1.49 1.33 4.84 4.55 1.32 7.04 1.92 3.03 0.00 4.09 0.00 3.51 1.14 2.63 2.27 0.00 3.57 4.21 3.81 0.00 0.00 0.00 3.17 0.00 2.78 0.00 0.50 1.31 0.99 1.99 0.00 2.01 1.85 0.00 2.27 5.31 1.61 0.00 4.51 1.75 3.25 1.22 2.41 1.71 3.17 2.61 1.68 0.00 K intron_retention EF_chr2R_8548702_8595112,nemy chr2R - chr2R_8559647_8559706 chr2R_8559646_8559647;chr2R_8559706_8559707 chr2R_8559062_8559646;chr2R_8559707_8560092 99.31 99.15 98.21 99.04 98.36 98.55 98.91 98.88 100.00 99.07 100.00 99.20 97.22 98.46 100.00 100.00 100.00 97.26 100.00 99.35 100.00 99.40 100.00 98.86 99.00 100.00 99.31 99.19 99.35 99.26 100.00 98.95 100.00 98.99 99.06 100.00 99.54 98.75 99.50 99.48 99.12 99.33 100.00 98.29 99.31 99.32 100.00 100.00 99.32 99.31 99.53 98.98 97.95 97.69 98.86 100.00 98.65 99.38 N jcn_only_AA Adgf-A,Msi,F_chr3L_17749926_17757161 chr3L - chr3L_17749920_17757161;chr3L_17747522_17757161;chr3L_17756677_17757161 chr3L_17747526_17757161 chr3L_17757162_17757241 72.75 71.49 70.49 70.81 70.95 72.21 71.28 73.29 73.25 66.45 72.11 74.17 74.13 74.31 75.63 72.75 76.85 76.97 73.83 73.85 74.20 74.55 70.24 76.36 69.15 74.20 69.92 74.43 69.18 69.47 76.68 74.01 73.03 68.99 67.06 75.43 71.86 72.32 74.25 69.77 71.89 73.55 67.32 71.84 73.79 71.77 70.74 70.05 74.96 80.46 67.40 71.51 73.92 78.08 76.64 73.39 70.22 71.34 K cassette CG6206,I_chr2L_10459281_10459879,I_chr2L_10459518_10459620,I_chr2L_10459518_10459661 chr2L + chr2L_10459281_10459879;chr2L_10459281_10459661 chr2L_10459281_10459383;chr2L_10459518_10459661,chr2L_10459518_10459879 chr2L_10459384_10459517 chr2L_10459181_10459280;chr2L_10459880_10459979 100.00 100.00 100.00 99.02 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 97.92 97.22 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.48 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 98.70 100.00 100.00 94.74 100.00 100.00 98.00 100.00 100.00 96.67 K intron_retention CG9240 chrX - chrX_15594841_15595021 chrX_15594840_15594841;chrX_15595021_15595022 chrX_15594205_15594840;chrX_15595022_15595215 0.00 1.59 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 2.11 0.00 0.00 1.59 0.00 0.00 0.00 3.39 5.56 4.17 0.00 0.00 0.00 3.70 0.00 4.76 4.17 0.00 0.00 2.27 2.22 0.00 0.00 0.00 0.00 3.12 0.00 1.54 0.00 0.00 4.35 1.75 0.00 1.67 0.00 2.17 2.99 4.62 0.00 K intron_retention ras chrX + chrX_10639523_10639710 chrX_10639522_10639523;chrX_10639710_10639711 chrX_10639459_10639522;chrX_10639711_10639997 7.92 7.69 16.13 7.84 10.00 13.04 3.70 6.52 5.88 NA 6.25 8.82 3.45 5.13 11.54 5.13 7.41 4.35 16.67 10.34 6.25 7.14 10.64 9.09 10.53 4.76 20.00 34.48 40.00 5.88 8.82 7.69 NA 9.30 0.00 0.00 20.00 8.00 14.81 5.71 NA 5.97 12.50 10.00 7.14 9.52 7.69 NA 3.92 14.71 7.32 10.53 9.09 NA 5.71 7.69 13.79 8.33 K intron_retention eIF5B,I_chr3L_3429084_3443457,I_chr3L_3432366_3445364 chr3L - chr3L_3429084_3432203 chr3L_3429083_3429084;chr3L_3432203_3432204 chr3L_3428984_3429083;chr3L_3432204_3432365 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr2R_16158045_16158109,CG11788 chr2R + chr2R_16162234_16162292 chr2R_16162233_16162234;chr2R_16162292_16162293 chr2R_16162174_16162233;chr2R_16162293_16163432 8.00 25.00 0.00 NA 10.00 6.67 5.88 9.09 7.55 NA NA 0.00 0.00 0.00 9.09 6.67 10.00 0.00 8.00 12.50 3.85 19.05 20.00 21.43 NA NA 14.29 10.00 NA NA 27.78 NA 7.41 4.35 NA NA 0.00 10.53 6.67 16.67 NA 5.13 0.00 6.67 13.04 8.33 NA 4.55 5.26 9.52 11.76 7.14 0.00 0.00 13.04 12.50 8.33 8.33 K intron_retention CG33558,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,I_chr2R_2820149_2820628,EI_chr2R_2820947_2821570,CREI_chr2R_2832933_2850384 chr2R - chr2R_2817876_2820628 chr2R_2817875_2817876;chr2R_2820628_2820629 chr2R_2817851_2817875;chr2R_2820629_2820728 20.00 20.00 NA NA NA NA 36.36 33.33 25.00 NA NA NA NA NA NA NA NA NA NA NA NA 8.00 15.15 25.00 NA NA 15.38 NA NA NA NA NA NA 30.77 NA NA 20.00 0.00 14.29 37.50 20.00 31.82 NA NA NA 11.11 12.50 25.00 33.33 2.56 12.50 NA NA 4.76 NA NA NA 41.67 N jcn_only_AD CG9338,CG31675 chr2L + chr2L_20865586_20866935 chr2L_20866001_20866935 chr2L_20866936_20867640;chr2L_20865412_20865585 0.00 2.73 0.00 6.67 0.00 0.00 0.00 3.48 2.95 0.00 0.00 3.62 0.00 3.98 0.00 0.00 0.00 0.00 0.00 3.22 0.00 0.00 5.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.67 5.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.02 0.00 0.00 0.00 0.00 0.00 0.00 4.46 0.00 2.88 0.00 0.00 0.00 3.17 3.79 0.00 0.00 K cassette CG14764,RI_chr2R_3841817_3841882 chr2R - chr2R_3836026_3842817 chr2R_3836026_3841406;chr2R_3841817_3842817 chr2R_3841407_3841816 chr2R_3835926_3836025;chr2R_3842818_3843324 100.00 97.78 100.00 98.84 100.00 100.00 98.59 100.00 100.00 100.00 100.00 98.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 98.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 K alternative_donor CG10080 chr2R + chr2R_17517559_17517991 chr2R_17517589_17517991 chr2R_17517992_17518052;chr2R_17517196_17517558 30.56 30.56 32.14 22.50 38.89 33.33 26.32 11.11 24.00 22.22 32.00 31.91 25.93 31.03 20.00 22.86 19.35 26.67 28.00 21.62 26.67 48.84 30.30 33.33 35.29 17.24 31.43 16.22 31.43 23.81 37.04 32.00 32.00 18.00 50.00 42.11 28.81 27.78 38.89 24.39 26.67 26.09 26.09 36.00 40.91 42.42 40.91 38.10 37.04 26.09 37.50 32.00 28.00 36.84 26.67 21.05 31.82 31.03 K alternative_acceptor CG32202 chr3L + chr3L_18675478_18675538 chr3L_18675478_18675524 chr3L_18675302_18675477;chr3L_18675539_18675973 4.35 NA 0.00 9.68 NA 0.00 3.03 5.13 2.56 NA 0.00 0.00 NA 9.52 10.53 3.03 NA 0.00 0.00 3.17 0.00 5.00 17.24 5.56 7.69 4.35 35.71 13.33 0.00 0.00 9.09 14.29 9.09 5.56 0.00 NA NA 0.00 4.76 3.45 8.70 6.67 6.25 0.00 9.09 0.00 0.00 0.00 2.94 11.11 4.76 NA 0.00 5.88 6.25 11.76 3.85 3.03 K alternative_donor Khc,EI_chr2R_12157759_12157824 chr2R - chr2R_12157759_12158843 chr2R_12157759_12157824 chr2R_12157659_12157758;chr2R_12158844_12159487 1.67 1.77 1.96 2.91 0.92 1.00 1.71 1.85 1.97 1.11 2.11 2.90 2.08 1.08 0.85 1.55 0.95 2.15 1.80 1.81 0.93 4.03 1.13 1.79 1.15 0.76 2.16 4.00 2.80 1.41 3.54 2.08 1.67 2.30 1.18 0.91 2.09 0.87 1.28 1.91 2.00 1.58 1.19 1.28 1.72 0.89 1.98 1.95 1.61 1.74 1.56 2.41 1.67 1.32 1.43 1.00 1.27 1.54 K intron_retention Dscam,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3249373_3250836 chr2R_3249372_3249373;chr2R_3250836_3250837 chr2R_3249273_3249372;chr2R_3250837_3250956 47.83 NA NA 47.83 NA NA NA 45.45 NA NA NA NA NA NA NA NA NA NA 69.23 NA NA 73.33 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG32529 chrX + chrX_19781526_19793044 chrX_19781525_19781526;chrX_19793044_19793045 chrX_19781512_19781525;chrX_19793045_19793075 58.47 NA 71.43 56.67 NA 50.00 68.00 64.71 53.33 NA NA 61.29 55.00 63.16 75.00 67.86 72.73 NA 36.84 55.56 60.00 38.46 53.85 NA NA 72.73 76.92 NA 42.86 33.33 65.00 NA 37.50 45.16 58.33 28.57 NA NA NA 61.11 NA 58.62 88.89 NA NA 53.85 NA 39.29 66.67 NA 64.71 63.64 NA NA 55.56 NA NA 38.89 K intron_retention CG8412,I_chr3R_5583152_5583200 chr3R + chr3R_5582727_5582786 chr3R_5582726_5582727;chr3R_5582786_5582787 chr3R_5582260_5582726;chr3R_5582787_5582915 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 1.39 0.00 2.08 0.00 0.00 0.00 4.17 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Stim chrX - chrX_15831788_15832790 chrX_15831788_15832264;chrX_15832369_15832790 chrX_15832265_15832368 chrX_15831624_15831787;chrX_15832791_15833231 3.81 5.97 2.70 1.67 2.86 1.92 1.52 1.68 2.41 3.23 9.09 1.08 0.00 5.56 2.70 5.56 1.67 4.62 1.41 3.81 6.98 7.32 5.45 4.41 5.41 1.41 2.56 2.33 3.23 10.81 15.62 5.26 5.13 3.26 5.71 0.00 6.45 1.61 4.11 5.66 3.23 2.24 3.92 3.85 4.17 8.33 6.52 9.09 3.88 2.04 7.14 3.85 0.00 3.70 2.63 6.52 2.44 2.94 K intron_retention Atx2,CE_chr3R_11234606_11238462 chr3R + chr3R_11234912_11237842 chr3R_11234911_11234912;chr3R_11237842_11237843 chr3R_11234821_11234911;chr3R_11237843_11238243 0.00 0.00 0.00 6.25 0.00 3.12 5.00 0.00 3.00 0.00 0.00 1.59 0.00 0.00 2.38 0.00 3.45 9.09 9.68 1.30 0.00 9.68 3.64 0.00 0.00 0.00 3.08 2.47 5.56 2.08 12.50 NA 0.00 1.67 3.23 0.00 0.00 0.00 1.15 0.00 0.00 2.35 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 4.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Dsp1,I_chrX_16231287_16231413 chrX + chrX_16227752_16228333 chrX_16227751_16227752;chrX_16228333_16228334 chrX_16227698_16227751;chrX_16228334_16228446 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.86 100.00 95.45 98.28 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K multi_cassette CG6854,E_chr3L_15091621_15103920,chr3L_15091617_15091865.0,chr3L_15093344_15094204.0,chr3L_15094261_15095048.0,RI_chr3L_15102059_15102345 chr3L + chr3L_15091617_15102643 chr3L_15091617_15101715;chr3L_15102059_15102437;chr3L_15102588_15102643 chr3L_15101716_15102058;chr3L_15102438_15102587 chr3L_15091548_15091616;chr3L_15102644_15103437 100.00 100.00 100.00 87.50 100.00 100.00 100.00 87.50 100.00 87.50 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 90.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 83.33 88.89 88.89 87.50 100.00 K intron_retention Arp14D,RE_chrX_16445264_16446372 chrX - chrX_16443182_16443253 chrX_16443181_16443182;chrX_16443253_16443254 chrX_16442302_16443181;chrX_16443254_16443445 99.28 100.00 98.48 99.21 100.00 96.61 99.03 100.00 97.58 100.00 94.59 99.15 100.00 100.00 98.65 100.00 98.33 98.55 98.73 100.00 97.87 97.73 97.44 97.62 100.00 98.44 100.00 100.00 100.00 100.00 98.80 100.00 100.00 100.00 100.00 100.00 97.30 95.83 100.00 98.97 98.86 99.28 100.00 100.00 98.51 100.00 92.31 100.00 99.28 100.00 97.44 100.00 100.00 100.00 98.82 100.00 98.04 98.37 K intron_retention AGO1,I_chr2R_9844856_9845327 chr2R - chr2R_9838423_9839118 chr2R_9838422_9838423;chr2R_9839118_9839119 chr2R_9837637_9838422;chr2R_9839119_9839193 0.00 0.00 0.00 3.92 0.00 3.12 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 2.27 0.00 0.00 2.35 0.00 0.75 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.94 0.00 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 K cassette CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157794_157864 chr4 + chr4_157794_158016 chr4_157794_157848;chr4_157959_158016 chr4_157849_157958 chr4_157699_157793;chr4_158017_158243 96.55 97.44 93.62 93.46 97.14 97.62 96.77 98.01 94.81 92.86 97.14 99.09 98.28 97.10 98.15 95.86 95.08 95.83 95.79 96.67 96.30 100.00 94.29 92.00 86.21 82.54 97.37 100.00 83.33 96.55 97.37 90.91 100.00 94.89 97.06 96.30 94.74 93.33 95.83 97.62 92.31 96.59 96.88 97.44 88.89 93.33 100.00 94.29 97.78 100.00 97.56 96.55 88.89 100.00 95.59 92.31 100.00 100.00 K intron_retention UbcD2,noncoding_2473,CG6724 chr2L - chr2L_10767013_10767656 chr2L_10767012_10767013;chr2L_10767656_10767657 chr2L_10766391_10767012;chr2L_10767657_10767740 1.04 0.00 0.00 1.28 0.00 0.00 1.72 3.14 2.02 0.00 0.98 2.23 0.00 0.00 1.77 1.59 2.78 0.00 2.15 1.04 1.09 1.41 0.00 3.12 0.00 1.94 3.57 2.78 2.08 0.00 1.22 0.00 0.00 1.35 0.00 0.00 1.65 2.11 0.00 2.53 0.00 1.03 1.03 0.00 0.00 0.00 0.00 2.29 1.09 2.82 2.44 2.50 0.00 0.00 3.51 0.00 0.00 2.00 K intron_retention CG16791 chr3R - chr3R_17149250_17149337 chr3R_17149249_17149250;chr3R_17149337_17149338 chr3R_17149161_17149249;chr3R_17149338_17149475 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Zn72D,RF_chr3L_16100887_16102721,I_chr3L_16105199_16105253 chr3L - chr3L_16102155_16102721 chr3L_16102154_16102155;chr3L_16102721_16102722 chr3L_16102090_16102154;chr3L_16102722_16102821 20.00 20.00 20.00 20.83 NA 26.67 28.57 28.57 24.14 NA 22.22 21.88 NA 40.00 30.00 29.41 NA NA NA 15.15 25.00 0.00 15.62 20.00 23.08 NA 16.67 23.53 26.09 26.92 11.86 19.05 6.25 29.73 15.00 15.00 26.09 35.29 28.57 15.15 10.71 23.08 25.00 9.09 12.50 18.75 15.00 12.50 34.48 NA 18.52 NA 21.05 NA 19.05 13.33 0.00 17.14 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2392054;chrX_2392149_2392515;chrX_2392665_2395659 chrX_2392055_2392148;chrX_2392516_2392664 chrX_2387149_2387248;chrX_2395660_2395759 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.59 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 1.01 0.76 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 K intron_retention Mkp3 chr3L - chr3L_19063200_19078420 chr3L_19063199_19063200;chr3L_19078420_19078421 chr3L_19063082_19063199;chr3L_19078421_19079522 3.97 2.70 4.44 5.13 7.69 4.17 4.76 1.43 6.45 2.86 2.56 7.14 8.33 4.65 4.44 10.42 0.00 5.00 6.52 4.58 7.69 3.37 4.65 5.84 5.38 4.17 3.26 3.23 4.26 4.72 0.00 1.59 0.00 7.14 4.48 3.75 3.97 2.36 2.54 2.27 3.19 5.21 5.26 2.65 5.06 1.92 1.80 0.00 9.38 2.56 2.50 3.61 2.20 5.06 1.72 2.44 1.52 2.11 K intron_retention CG1746,I_chr3R_27042457_27043461,RNaseP:RNA,RI_chr3R_27044771_27045268 chr3R - chr3R_27042457_27043461 chr3R_27042456_27042457;chr3R_27043461_27043462 chr3R_27042432_27042456;chr3R_27043462_27043561 100.00 99.22 100.00 100.00 99.00 100.00 99.62 99.72 100.00 97.83 100.00 99.54 100.00 100.00 100.00 99.76 99.35 100.00 100.00 99.44 100.00 91.57 100.00 100.00 100.00 100.00 100.00 98.33 94.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.61 100.00 98.41 99.19 100.00 99.63 100.00 100.00 100.00 99.24 99.00 100.00 100.00 99.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG2225,Ef2b,I_chr2L_21681559_21681721,I_chr2L_21681559_21682037,I_chr2L_21681559_21737600,I_chr2L_21681561_21682041,I_chr2L_21681805_21682038 chr2L - chr2L_21681559_21682038 chr2L_21681805_21682038 chr2L_21682039_21682137;chr2L_21681461_21681558 0.01 0.00 0.03 0.01 0.00 0.00 0.03 0.02 0.01 0.00 0.00 0.03 0.00 0.03 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.04 0.03 0.02 0.06 0.03 0.05 0.07 0.05 0.02 0.03 0.00 0.03 0.00 0.00 0.02 0.02 0.00 0.02 0.04 0.17 0.01 0.00 0.00 0.00 0.04 0.00 0.00 0.01 0.03 0.03 0.00 0.03 0.00 0.00 0.00 0.02 0.00 K alternative_donor drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389597_9390195;chr2R_9389597_9390151;chr2R_9389597_9389907;chr2R_9389597_9389940;chr2R_9389597_9390293;chr2R_9389597_9389751;chr2R_9389597_9390264;chr2R_9389597_9389757 chr2R_9389597_9389753 chr2R_9389497_9389596;chr2R_9390294_9390295 5.26 5.26 2.44 6.78 4.17 3.33 1.85 3.23 4.82 6.67 3.12 6.67 3.33 3.70 2.86 7.69 3.85 2.86 5.13 4.90 3.23 4.35 5.71 8.33 8.70 8.11 9.52 6.67 6.25 0.00 2.50 6.67 12.50 4.92 5.56 3.85 4.76 7.69 4.35 2.63 11.11 9.59 5.26 5.56 7.14 5.56 5.26 8.00 6.06 6.25 4.76 4.17 4.76 0.00 7.69 11.76 3.12 8.33 K intron_retention CG2118,I_chr3R_27617744_27617821,I_chr3R_27619193_27619598 chr3R - chr3R_27617807_27617865 chr3R_27617806_27617807;chr3R_27617865_27617866 chr3R_27617515_27617806;chr3R_27617866_27617921 0.00 NA 0.00 9.52 0.00 0.00 5.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 15.38 0.00 0.00 4.35 0.00 NA 0.00 0.00 0.00 0.00 NA 4.26 0.00 0.00 0.00 7.41 NA 0.00 4.65 0.00 4.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention AGO2 chr3L + chr3L_15552104_15552199 chr3L_15552103_15552104;chr3L_15552199_15552200 chr3L_15551494_15552103;chr3L_15552200_15552361 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.86 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.53 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG17683,I_chr2R_18774_18869 chr2R + chr2R_18774_18826;chr2R_18774_18869 chr2R_18774_18851 chr2R_18768_18773;chr2R_18870_18969 10.55 20.00 25.00 10.00 14.29 16.67 15.00 8.00 4.55 0.00 0.00 5.56 14.29 0.00 9.09 18.75 9.09 0.00 9.09 18.75 20.00 9.09 18.18 33.33 0.00 25.00 8.33 NA 0.00 0.00 15.79 0.00 10.00 5.88 18.18 45.45 0.00 16.67 16.67 16.67 21.43 11.76 8.33 0.00 0.00 18.18 16.67 11.11 6.25 12.50 22.22 12.50 0.00 16.67 6.67 11.11 9.09 7.69 K jcn_only_AA CG8080,RI_chr2R_4978542_4978911,REI_chr2R_4978545_4978911,REI_chr2R_4979159_4979234,I_chr2R_4979276_4979936 chr2R - chr2R_4978557_4978911;chr2R_4978542_4978911 chr2R_4978545_4978911 chr2R_4978912_4979011;chr2R_4978445_4978541 19.20 6.06 21.74 21.74 29.17 22.73 33.33 16.22 15.25 19.35 NA 7.14 10.00 20.00 17.65 13.04 10.00 21.43 26.09 31.82 NA NA 26.47 20.59 33.33 12.90 29.17 NA 13.04 14.71 18.75 9.68 14.63 22.45 NA 3.70 21.74 25.00 9.76 24.24 16.00 22.41 11.54 14.63 14.81 21.67 30.77 19.70 16.92 43.59 17.02 14.29 18.42 19.05 24.32 22.50 23.53 18.18 K intron_retention CG5958 chr2L - chr2L_7430856_7431078 chr2L_7430855_7430856;chr2L_7431078_7431079 chr2L_7430529_7430855;chr2L_7431079_7431540 0.00 0.00 0.00 0.85 1.90 0.00 2.07 1.08 1.49 0.00 0.00 0.00 2.34 0.00 0.00 1.50 0.00 0.00 0.00 0.37 0.69 0.00 0.77 1.23 0.00 0.00 0.00 1.26 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.67 0.00 0.45 0.00 0.00 0.00 0.00 1.14 0.00 1.50 0.54 0.53 0.00 0.53 0.00 1.56 1.19 0.71 1.76 K intron_retention Ac78C,F_chr3L_21141024_21153737 chr3L - chr3L_21130895_21130953 chr3L_21130894_21130895;chr3L_21130953_21130954 chr3L_21130666_21130894;chr3L_21130954_21131357 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 3.85 0.00 0.00 K jcn_only_AA EI_chr3R_4647896_4648190,CG8379 chr3R + chr3R_4650612_4650676 chr3R_4650612_4650673 chr3R_4650410_4650611;chr3R_4650677_4651130 57.58 58.93 52.78 53.33 69.23 60.53 44.83 64.47 54.39 62.07 52.50 60.38 46.34 69.57 57.58 43.75 NA 57.14 52.63 56.93 64.29 58.82 56.48 57.61 60.38 67.74 51.39 55.71 61.40 68.25 64.52 54.76 47.27 61.02 64.41 50.00 61.70 47.37 54.44 60.24 57.58 49.40 60.61 60.26 61.54 56.45 50.00 59.09 55.66 61.82 54.05 66.15 54.00 68.29 65.12 48.00 51.22 53.12 K jcn_only_AD e(y)3,I_chrX_19530503_19530884,I_chrX_19530503_19531405 chrX - chrX_19530503_19531650;chrX_19530503_19531405;chrX_19530503_19532222 chrX_19530503_19530884 chrX_19530403_19530502;chrX_19532223_19532322 9.33 15.56 8.33 5.56 13.73 3.39 10.42 7.14 8.74 3.57 7.14 3.26 10.20 4.17 5.45 3.45 13.46 10.00 6.25 4.95 5.88 8.20 5.56 9.38 10.34 10.53 8.47 16.67 4.08 9.62 9.43 4.17 12.96 12.79 6.00 10.00 10.00 0.00 9.86 10.00 15.00 6.19 16.67 7.69 21.74 18.60 7.14 9.72 9.28 4.00 11.27 10.91 7.41 NA 19.70 13.04 0.00 18.42 K intron_retention bora chr3L + chr3L_18616165_18616222 chr3L_18616164_18616165;chr3L_18616222_18616223 chr3L_18615694_18616164;chr3L_18616223_18617892 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Rab5,I_chr2L_2361586_2364444,RI_chr2L_2361586_2364627,I_chr2L_2361586_2364794 chr2L - chr2L_2361586_2364640;chr2L_2361586_2364480;chr2L_2361586_2364836;chr2L_2361586_2365060;chr2L_2361586_2364302;chr2L_2361586_2364594;chr2L_2361586_2364312 chr2L_2361586_2364889 chr2L_2361486_2361585;chr2L_2365061_2365065 47.54 45.33 48.97 47.54 57.06 49.01 51.11 52.59 50.56 47.96 59.43 51.21 47.37 52.69 49.10 51.88 50.54 46.89 53.57 44.77 55.44 30.70 49.44 47.22 50.00 49.75 43.75 24.72 23.18 19.44 47.83 24.26 14.66 50.56 31.30 15.44 58.55 58.00 56.99 24.66 15.66 46.87 49.32 27.11 27.31 21.88 32.14 18.70 49.73 54.81 41.98 52.14 26.73 35.29 51.60 39.74 46.86 16.42 K intron_retention Hph chr3R + chr3R_1090925_1092474 chr3R_1090924_1090925;chr3R_1092474_1092475 chr3R_1090787_1090924;chr3R_1092475_1092754 71.43 NA 66.67 45.83 NA 87.50 73.33 64.71 64.00 NA NA 91.67 NA NA 63.64 82.35 77.78 66.67 81.82 70.59 NA NA 87.50 60.00 NA NA NA NA NA NA 71.43 NA NA 73.33 NA NA NA NA NA 77.78 54.55 80.00 NA NA 77.78 NA 54.55 63.64 84.21 NA 60.00 NA NA NA NA NA NA NA K intron_retention CG32343,I_chr3L_326540_326703,RI_chr3L_326725_326866 chr3L - chr3L_325825_325879 chr3L_325824_325825;chr3L_325879_325880 chr3L_325755_325824;chr3L_325880_325941 0.00 12.50 0.00 0.00 0.00 0.00 6.90 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 4.76 9.09 0.00 0.00 5.71 0.00 0.00 0.00 0.00 2.70 3.70 0.00 0.00 4.76 0.00 0.00 8.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Sdc,I_chr2R_17282542_17285569,RI_chr2R_17286086_17286391,I_chr2R_17286089_17286391,I_chr2R_17286819_17367595,I_chr2R_17324594_17367595 chr2R - chr2R_17282551_17286679;chr2R_17282551_17286391 chr2R_17282551_17285569;chr2R_17286086_17286679,chr2R_17286086_17286391 chr2R_17285570_17286085 chr2R_17282383_17282550;chr2R_17286680_17286818 83.42 88.29 76.58 93.79 74.47 74.26 74.19 82.67 85.29 74.36 69.51 78.54 48.72 84.44 86.36 91.82 84.71 75.32 78.35 86.02 83.54 83.96 83.43 83.61 82.22 74.23 78.91 68.09 83.62 89.84 85.86 86.57 84.04 81.33 91.95 77.55 83.42 88.28 77.96 62.89 79.10 81.99 86.25 94.04 78.99 87.16 78.00 86.83 85.96 79.25 82.58 81.71 91.06 85.33 76.47 81.71 90.60 92.50 K intron_retention CG11593 chr3L - chr3L_4040032_4040095 chr3L_4040031_4040032;chr3L_4040095_4040096 chr3L_4038814_4040031;chr3L_4040096_4040482 0.00 0.00 6.67 3.33 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 K intron_retention CG31431 chr3R + chr3R_17696656_17697703 chr3R_17696655_17696656;chr3R_17697703_17697704 chr3R_17696406_17696655;chr3R_17697704_17697862 90.59 91.11 84.00 91.35 88.46 91.07 84.13 94.81 83.54 100.00 92.42 87.93 98.36 85.48 88.75 93.07 89.83 88.00 89.47 94.05 98.18 86.36 84.09 85.11 87.50 91.78 90.57 96.30 76.92 86.67 96.47 90.00 91.49 92.08 87.10 96.55 92.86 81.25 85.71 85.96 93.44 88.08 90.91 90.91 95.45 91.46 95.12 94.29 90.91 82.35 87.30 83.72 96.55 96.15 90.59 90.48 88.10 91.67 K intron_retention Shc chr3L + chr3L_9420425_9420486 chr3L_9420424_9420425;chr3L_9420486_9420487 chr3L_9420175_9420424;chr3L_9420487_9421779 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 2.34 3.57 7.50 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 2.13 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG17082,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_645254_645312;chr2R_645254_645306 chr2R_645254_645316 chr2R_645185_645253;chr2R_645317_645382 3.23 10.71 0.00 2.61 4.55 2.38 1.11 3.45 3.92 NA 2.56 6.17 3.57 15.38 1.85 4.60 3.77 0.00 5.66 4.41 7.89 NA 0.00 2.27 0.00 2.00 0.00 NA 0.00 3.33 5.56 10.71 0.00 3.16 2.38 3.70 3.70 7.14 0.00 2.90 2.56 2.02 2.08 16.67 4.76 1.82 6.12 3.23 2.86 1.61 2.33 10.34 NA 0.00 7.50 4.69 3.92 4.00 K intron_retention Jhebp29,RI_chr2R_20857941_20857992,RI_chr2R_20857941_20858127 chr2R + chr2R_20857941_20857992 chr2R_20857940_20857941;chr2R_20857992_20857993 chr2R_20857841_20857940;chr2R_20857993_20858071 98.75 100.00 98.55 98.92 100.00 98.36 98.75 99.07 98.32 96.43 100.00 98.92 100.00 100.00 98.51 96.51 97.92 100.00 98.33 99.19 98.18 88.89 100.00 98.72 100.00 100.00 100.00 96.97 96.67 100.00 97.10 97.67 100.00 98.80 100.00 100.00 100.00 97.83 98.55 97.37 98.28 99.11 100.00 96.77 98.28 98.57 100.00 97.50 100.00 98.36 100.00 97.50 96.30 98.39 100.00 96.49 99.03 100.00 K alternative_donor alpha-Man-I,I_chrX_10218352_10219759,I_chrX_10218390_10219759 chrX - chrX_10218352_10219846;chrX_10218352_10219816;chrX_10218352_10219918;chrX_10218352_10219759;chrX_10218352_10219665;chrX_10218352_10219708 chrX_10218352_10219823 chrX_10218290_10218351;chrX_10219919_10219979 22.88 14.29 16.67 30.77 16.67 33.33 30.00 23.53 42.11 50.00 20.00 25.00 NA 33.33 25.00 19.05 16.67 16.67 25.00 35.71 16.67 33.33 50.00 28.57 28.57 14.29 12.50 NA NA 22.22 14.29 NA 28.57 8.33 NA 16.67 50.00 42.86 NA 25.00 16.67 15.38 25.00 16.67 NA 20.00 NA 22.22 40.00 33.33 20.00 25.00 20.00 NA 11.11 50.00 20.00 16.67 K intron_retention coro,I_chr2R_2752880_2760038,I_chr2R_2754447_2754986,I_chr2R_2754447_2755071 chr2R - chr2R_2754447_2760059 chr2R_2754446_2754447;chr2R_2760059_2760060 chr2R_2754347_2754446;chr2R_2760060_2760138 66.67 66.67 60.00 50.00 69.23 45.45 73.33 59.09 65.71 63.64 66.67 60.71 NA 86.67 70.00 75.00 66.67 71.43 76.92 70.27 63.64 71.43 53.57 68.18 58.33 53.33 71.43 50.00 43.75 73.33 70.59 70.00 50.00 66.67 63.64 60.00 57.14 53.33 60.87 71.05 NA 59.38 72.73 50.00 47.06 85.71 82.35 77.78 65.38 69.23 70.83 58.82 66.67 80.00 71.43 70.59 60.00 60.00 K intron_retention Pitslre,I_chr3L_20764965_20766192,I_chr3L_20764965_20766212,I_chr3L_20766064_20766192,I_chr3L_20766064_20766215,RI_chr3L_20766064_20766893,I_chr3L_20766311_20766664,I_chr3L_20766311_20766893,I_chr3L_20766773_20766893 chr3L + chr3L_20766064_20766893 chr3L_20766063_20766064;chr3L_20766893_20766894 chr3L_20766035_20766063;chr3L_20766894_20766993 76.39 NA NA NA NA NA NA 83.33 93.75 NA NA 93.33 NA 88.89 NA 90.00 NA NA NA 82.35 NA 96.15 70.83 64.29 NA NA 81.25 75.00 72.73 63.64 47.06 NA 78.57 87.50 NA 66.67 52.94 53.85 66.67 80.95 NA 86.67 NA 73.33 NA 75.00 60.00 87.50 100.00 60.00 78.95 63.64 NA NA 77.78 75.00 NA NA K intron_retention tral,I_chr3L_12512171_12512251 chr3L + chr3L_12510160_12510527 chr3L_12510159_12510160;chr3L_12510527_12510528 chr3L_12509677_12510159;chr3L_12510528_12511057 1.37 1.24 0.00 2.05 3.30 0.00 1.60 1.97 0.65 1.87 1.85 0.78 2.15 2.33 1.99 2.70 2.41 3.30 1.09 0.69 0.00 2.86 0.78 1.04 1.79 3.70 1.20 1.38 1.23 1.49 1.37 2.73 1.37 1.10 0.70 10.00 1.64 0.00 0.72 1.23 0.00 1.95 0.00 0.00 1.95 1.83 1.56 1.40 0.89 1.22 1.10 4.76 1.28 1.57 0.00 0.69 0.00 1.42 K intron_retention CG2765,RI_chr2R_20849027_20852094,I_chr2R_20849271_20849626,I_chr2R_20849271_20850005,E_chr2R_20849271_20850693,E_chr2R_20849271_20851166,E_chr2R_20849271_20852090,E_chr2R_20851190_20852094 chr2R - chr2R_20849271_20852094 chr2R_20849270_20849271;chr2R_20852094_20852095 chr2R_20849171_20849270;chr2R_20852095_20852190 10.04 9.68 18.59 4.82 10.00 16.82 7.28 5.77 10.15 7.59 6.14 11.67 10.56 13.88 9.78 11.99 11.76 8.91 12.55 10.36 10.04 14.75 11.71 7.42 16.25 16.11 12.54 9.77 8.18 8.97 14.41 5.30 12.76 12.40 22.14 10.07 5.94 8.76 6.30 13.55 8.82 13.42 12.07 7.79 2.25 5.91 4.57 13.21 10.09 7.06 13.31 14.18 9.46 6.09 12.45 4.97 4.69 3.97 K intron_retention Aats-cys chr2R + chr2R_12030920_12030986 chr2R_12030919_12030920;chr2R_12030986_12030987 chr2R_12030648_12030919;chr2R_12030987_12031476 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Rab30,I_chr2L_7032178_7032236 chr2L - chr2L_7032178_7032321 chr2L_7032177_7032178;chr2L_7032321_7032322 chr2L_7032078_7032177;chr2L_7032322_7032336 16.03 NA NA 16.67 NA NA 20.00 7.14 18.75 NA NA 12.50 NA NA NA NA NA NA NA 15.38 NA NA 25.00 NA NA NA NA NA 20.00 NA NA NA NA 14.29 NA NA NA NA NA 12.50 23.08 21.43 NA NA NA 5.88 NA 12.50 20.00 NA 13.33 NA NA NA NA NA NA NA K intron_retention wts chr3R - chr3R_26617863_26617930 chr3R_26617862_26617863;chr3R_26617930_26617931 chr3R_26617742_26617862;chr3R_26617931_26620211 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 3.17 2.94 3.17 0.00 0.00 0.00 0.00 0.00 0.00 1.82 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD tud,I_chr2R_17086183_17086333 chr2R + chr2R_17072524_17072579 chr2R_17072527_17072579 chr2R_17072580_17073413;chr2R_17072023_17072523 98.68 100.00 96.65 98.46 98.83 99.37 97.26 98.37 98.42 98.98 98.68 98.49 99.37 98.88 99.04 98.22 97.69 97.55 99.34 98.03 99.40 99.25 96.99 98.80 98.77 98.09 98.03 96.35 99.46 98.45 99.47 95.12 100.00 98.05 99.32 99.52 100.00 99.16 98.36 98.82 100.00 96.72 98.55 97.59 100.00 98.73 97.92 99.51 99.69 97.83 99.52 100.00 98.25 98.04 98.39 98.04 97.50 100.00 K intron_retention lola,I_chr2R_6419625_6419686,I_chr2R_6420999_6421080,E_chr2R_6421101_6421237,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6421017_6421080 chr2R_6421016_6421017;chr2R_6421080_6421081 chr2R_6421001_6421016;chr2R_6421081_6421100 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA oho23B,I_chr2L_2856176_2856244,I_chr2L_2856573_2856630,RI_chr2L_2856673_2856772 chr2L + chr2L_2856306_2856391 chr2L_2856306_2856376 chr2L_2856279_2856305;chr2L_2856392_2856568 99.99 100.00 100.00 99.99 99.98 99.97 100.00 100.00 100.00 99.98 100.00 99.99 100.00 100.00 99.99 99.97 99.98 99.99 99.98 99.99 100.00 99.96 99.99 99.99 99.96 100.00 99.98 84.86 100.00 99.99 99.99 100.00 99.99 100.00 99.98 100.00 99.98 99.99 99.99 99.99 99.99 99.99 99.98 99.99 99.98 99.99 99.99 100.00 99.99 99.99 99.98 99.96 100.00 99.99 99.99 99.99 100.00 99.99 K jcn_only_AD RI_chrX_1796525_1796585,mip130,CG3573,I_chrX_1820956_1821011,CG11596 chrX + chrX_1820952_1821011 chrX_1820956_1821011 chrX_1821012_1821111;chrX_1820856_1820951 1.83 1.98 2.00 0.00 2.78 1.53 2.86 1.21 2.11 2.08 1.12 1.83 0.00 0.00 3.80 0.79 1.09 0.72 2.40 2.42 3.92 0.31 0.79 2.38 2.50 3.57 1.55 4.46 3.04 1.95 1.99 1.89 2.19 2.76 0.90 3.03 1.44 1.65 2.64 1.73 1.62 1.68 1.85 3.03 1.12 2.36 1.07 2.81 0.79 4.57 3.32 1.27 0.00 1.68 1.44 0.87 1.64 1.41 K alternative_donor F_chr2L_5045484_5046146,CG14040,His3_3A chr2L + chr2L_5052994_5053238 chr2L_5053169_5053238 chr2L_5053239_5053356;chr2L_5052846_5052993 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 K mutually_exclusive pan chr4 + chr4_115242_118447,chr4_118602_120031 chr4_115242_115462,chr4_115629_120031 chr4_118448_118601 chr4_115463_115628 chr4_115049_115241;chr4_120032_120101 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD REI_chr3L_3042451_3043440,Jafrac2,I_chr3L_3042851_3043044,I_chr3L_3043202_3043271 chr3L + chr3L_3043202_3043271 chr3L_3043206_3043271 chr3L_3043272_3043339;chr3L_3043138_3043201 100.00 99.50 100.00 99.30 100.00 100.00 100.00 100.00 100.00 98.88 100.00 100.00 100.00 100.00 99.01 100.00 98.81 99.07 100.00 100.00 100.00 100.00 100.00 100.00 98.99 100.00 100.00 99.18 98.68 100.00 97.75 99.12 100.00 100.00 100.00 100.00 100.00 100.00 98.86 100.00 97.33 99.23 100.00 100.00 100.00 99.40 99.01 100.00 100.00 99.54 99.38 99.13 100.00 98.96 100.00 99.11 99.46 100.00 K jcn_only_AA CG1265,I_chr3L_4255296_4255550 chr3L + chr3L_4255296_4255353;chr3L_4255296_4255609;chr3L_4255296_4255457 chr3L_4255296_4255550 chr3L_4255196_4255295;chr3L_4255610_4255650 4.13 4.76 4.71 5.88 3.64 1.61 10.00 1.89 4.90 8.51 5.77 4.13 14.00 7.55 10.77 8.00 1.72 4.11 6.15 3.74 3.17 3.75 2.27 3.64 1.85 13.11 2.25 2.94 5.00 1.96 6.94 0.00 8.57 5.56 9.09 0.00 6.36 4.76 4.55 4.12 0.00 2.84 0.00 2.02 0.00 4.59 2.41 4.17 8.47 2.50 4.65 4.17 1.72 1.37 9.09 0.00 4.27 1.52 K intron_retention CG31150,Hmt-1 chr3R - chr3R_11674567_11674621 chr3R_11674566_11674567;chr3R_11674621_11674622 chr3R_11674440_11674566;chr3R_11674622_11674737 0.60 0.97 0.00 1.54 0.00 0.00 0.00 0.31 0.91 0.93 0.00 0.55 0.00 0.00 1.22 1.03 0.61 0.00 0.43 0.90 1.06 4.17 0.66 0.00 0.00 2.52 0.85 0.00 1.43 1.49 0.88 0.45 0.00 1.15 0.75 2.88 0.45 0.68 0.00 0.67 3.74 1.01 0.00 0.60 0.00 0.31 0.00 1.02 0.00 0.72 0.74 0.00 0.00 0.66 0.86 0.00 0.00 0.00 K intron_retention CG4589,I_chr2R_20402394_20402462,I_chr2R_20402394_20402706 chr2R - chr2R_20402394_20402753 chr2R_20402393_20402394;chr2R_20402753_20402754 chr2R_20402294_20402393;chr2R_20402754_20402806 2.27 NA 0.00 6.67 NA 0.00 10.00 1.82 9.76 NA 0.00 2.50 5.00 0.00 4.17 2.27 6.67 NA 0.00 0.00 0.00 20.00 NA NA NA 11.11 NA NA 12.50 NA 0.00 NA 13.64 3.85 NA NA NA NA NA 6.67 NA 7.50 0.00 NA 0.00 6.67 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K intron_retention CG12112,CG12111 chrX - chrX_8453397_8453458 chrX_8453396_8453397;chrX_8453458_8453459 chrX_8452954_8453396;chrX_8453459_8453612 0.00 0.00 1.54 4.58 0.00 0.00 0.49 0.00 0.72 0.00 0.00 0.00 0.00 1.54 1.79 0.94 1.20 0.00 3.12 0.00 0.00 0.81 0.00 0.00 3.28 2.04 2.04 1.32 4.27 0.00 0.00 1.37 0.00 1.02 0.00 1.89 0.00 0.00 0.00 0.53 0.91 0.83 0.00 0.00 1.81 0.87 0.00 0.34 0.82 1.39 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.58 K alternative_donor eIF-1A,I_chr3R_14106104_14107415,I_chr3R_14106955_14107415 chr3R + chr3R_14106104_14107415;chr3R_14106955_14107415 chr3R_14100864_14107415 chr3R_14107416_14107515;chr3R_14100759_14100863 100.00 100.00 99.78 99.44 100.00 100.00 99.68 99.89 99.78 100.00 99.75 99.77 99.77 99.75 99.81 99.65 100.00 100.00 99.80 99.78 100.00 100.00 99.77 100.00 100.00 99.78 99.78 99.26 100.00 100.00 100.00 100.00 100.00 99.72 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.77 100.00 100.00 100.00 100.00 100.00 100.00 99.75 100.00 100.00 100.00 100.00 100.00 99.83 100.00 100.00 100.00 N jcn_only_AD CG16971,CG33229,I_chr3L_225856_225909,RI_chr3L_225919_226004,I_chr3L_229245_230186 chr3L + chr3L_224184_224972;chr3L_224779_224972 chr3L_224886_224972 chr3L_224973_225140;chr3L_224174_224183 0.00 5.09 0.00 0.00 0.00 0.00 2.77 0.00 1.74 2.57 3.26 1.55 0.00 2.53 0.00 3.19 0.00 0.00 1.65 1.06 0.00 4.48 0.00 0.00 7.69 7.46 21.43 13.75 6.45 0.00 0.00 0.00 2.29 1.32 0.00 0.00 3.34 0.00 0.00 4.76 7.46 2.19 2.53 0.00 0.00 0.00 0.00 2.16 1.78 0.00 7.69 0.00 0.00 NA 0.00 0.00 0.00 2.62 K jcn_only_AD CG31716,I_chr2L_10397648_10398034 chr2L + chr2L_10399689_10399767;chr2L_10399713_10399767 chr2L_10399677_10399767 chr2L_10399768_10400679;chr2L_10399595_10399676 17.50 17.31 13.04 19.63 22.33 16.98 13.61 12.82 17.04 14.29 18.33 19.03 10.85 14.71 29.23 20.45 13.40 13.51 11.51 17.09 20.37 11.43 18.57 17.69 14.44 11.50 21.55 18.18 10.23 14.91 20.25 15.66 31.16 19.67 15.73 27.72 16.05 25.27 20.38 19.68 22.73 19.67 17.89 17.36 16.67 18.05 NA 15.92 19.27 17.89 17.73 27.85 17.65 16.42 15.50 18.95 9.89 15.84 K intron_retention CG42348,I_chr3L_20149990_20151579 chr3L - chr3L_20144991_20146263 chr3L_20144990_20144991;chr3L_20146263_20146264 chr3L_20144003_20144990;chr3L_20146264_20146435 70.00 77.42 55.56 72.22 73.53 62.96 78.57 73.91 81.97 52.17 77.27 82.50 90.00 77.78 69.23 66.67 60.00 66.67 83.33 63.41 69.57 84.31 41.77 58.82 73.91 87.50 60.78 71.43 65.38 72.41 66.67 70.00 68.89 70.49 53.33 70.37 61.84 70.00 73.08 70.67 65.91 79.31 60.87 71.88 74.67 57.35 54.76 70.00 71.62 78.26 59.68 62.07 32.61 62.16 71.88 75.00 44.29 54.17 K intron_retention CG32407 chr3L + chr3L_5915834_5915906 chr3L_5915833_5915834;chr3L_5915906_5915907 chr3L_5915580_5915833;chr3L_5915907_5916392 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 NA 0.00 4.17 0.00 0.00 0.00 5.56 0.00 0.00 4.76 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.12 0.00 0.00 0.00 0.00 2.86 NA 6.90 4.76 0.00 3.39 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 K intron_retention aux chr3R + chr3R_50731_50787 chr3R_50730_50731;chr3R_50787_50788 chr3R_50393_50730;chr3R_50788_51161 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.80 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 3.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette sgg,I_chrX_2565856_2566099,I_chrX_2566157_2566946 chrX + chrX_2564291_2565340 chrX_2564291_2565153;chrX_2565265_2565340 chrX_2565154_2565264 chrX_2564207_2564290;chrX_2565341_2565578 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 98.67 98.51 100.00 97.87 100.00 94.64 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 98.04 100.00 96.15 100.00 99.11 100.00 100.00 98.04 100.00 96.97 100.00 100.00 98.90 100.00 98.59 100.00 98.11 100.00 98.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 K intron_retention CG4662 chr3R + chr3R_15675876_15675930 chr3R_15675875_15675876;chr3R_15675930_15675931 chr3R_15675734_15675875;chr3R_15675931_15676041 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5380 chr3R - chr3R_18192426_18192483 chr3R_18192425_18192426;chr3R_18192483_18192484 chr3R_18191802_18192425;chr3R_18192484_18192869 0.00 NA NA 0.00 NA NA 8.00 8.33 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 0.00 4.35 NA NA NA NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 6.25 9.09 4.35 NA 0.00 NA NA 0.00 0.00 0.00 K intron_retention NTPase chr2L - chr2L_2882512_2882691 chr2L_2882511_2882512;chr2L_2882691_2882692 chr2L_2881382_2882511;chr2L_2882692_2882833 2.33 1.91 2.69 5.64 2.76 2.17 3.36 2.83 1.40 3.75 0.00 1.81 3.67 3.91 1.97 1.20 2.21 3.47 2.61 2.08 1.40 4.07 2.56 1.69 2.99 2.70 4.17 7.17 6.86 2.92 1.36 1.74 1.72 1.93 2.59 2.79 1.72 2.62 1.71 2.20 3.85 1.33 0.84 3.59 1.83 3.37 2.11 2.17 2.03 1.76 3.98 1.45 2.33 3.50 2.99 0.64 3.45 0.00 K intron_retention CG9947,eIF-2alpha chrX - chrX_16333320_16333456 chrX_16333319_16333320;chrX_16333456_16333457 chrX_16333264_16333319;chrX_16333457_16333547 29.41 35.71 46.15 NA NA 36.36 35.71 15.38 34.78 NA NA 32.14 31.25 46.15 NA 17.39 40.00 NA 21.43 23.53 NA 12.50 30.77 31.58 NA NA 35.71 21.43 NA 10.00 28.57 NA 25.00 38.89 NA NA 23.08 25.00 29.41 20.00 NA 26.09 NA 17.86 8.70 25.00 33.33 NA 50.00 23.08 40.00 NA NA NA NA 43.75 NA NA K alternative_donor Spase25,I_chrX_11379530_11379593 chrX + chrX_11379465_11379593 chrX_11379530_11379593 chrX_11379594_11379693;chrX_11379430_11379464 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.64 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.23 0.00 0.61 0.00 0.78 1.15 0.00 0.00 0.00 0.56 0.00 0.44 0.36 0.51 0.35 0.87 0.00 1.03 0.00 0.00 0.34 0.45 0.32 0.00 0.00 0.34 0.00 0.00 0.24 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpS12,I_chr3L_13016626_13017469,snoRNA:Me28S-A774a chr3L + chr3L_13016967_13017469 chr3L_13016966_13016967;chr3L_13017469_13017470 chr3L_13016832_13016966;chr3L_13017470_13017569 0.00 0.00 0.00 0.02 0.00 0.04 0.05 0.00 0.00 0.00 0.06 0.00 0.04 0.00 0.00 0.00 0.07 0.00 0.00 0.03 0.00 0.00 0.01 0.00 0.03 0.00 0.09 0.07 0.00 0.00 0.00 0.00 0.03 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 K intron_retention Rab35 chrX - chrX_20051870_20052002 chrX_20051869_20051870;chrX_20052002_20052003 chrX_20051145_20051869;chrX_20052003_20052302 0.00 0.00 0.00 2.96 0.00 0.00 0.00 0.52 0.38 0.00 0.00 1.17 2.35 0.00 1.43 0.00 0.00 0.85 0.00 0.83 0.00 1.07 0.00 0.00 0.00 0.00 0.65 4.48 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 1.32 0.00 0.00 1.31 0.00 0.71 0.00 0.00 1.20 0.00 1.40 1.06 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 K intron_retention SdhC,CG6672 chr3R - chr3R_7035463_7035519 chr3R_7035462_7035463;chr3R_7035519_7035520 chr3R_7034726_7035462;chr3R_7035520_7035588 0.00 0.00 0.00 1.87 0.00 0.00 2.15 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 6.67 4.65 0.00 2.11 11.11 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 2.13 0.00 1.72 0.00 0.00 4.76 0.00 0.00 NA 0.00 2.27 0.00 0.00 K intron_retention CG10254 chr3R - chr3R_19518083_19518139 chr3R_19518082_19518083;chr3R_19518139_19518140 chr3R_19517793_19518082;chr3R_19518140_19518534 50.00 53.85 33.33 80.00 46.67 NA 35.29 65.00 45.00 NA NA 50.00 NA 41.67 53.33 69.23 60.00 50.00 35.71 26.09 NA NA 58.82 61.54 41.67 50.00 69.23 NA NA NA 53.85 NA 38.46 84.62 40.00 70.00 37.50 NA 50.00 35.00 NA 40.74 NA 50.00 NA NA NA NA 46.15 NA 38.46 NA NA NA 57.14 NA NA 54.55 K jcn_only_AD CG7484,RI_chr3L_17647825_17647881,RI_chr3L_17647827_17648317 chr3L + chr3L_17647825_17647881 chr3L_17647827_17647881 chr3L_17647882_17647981;chr3L_17647729_17647824 100.00 100.00 98.57 100.00 98.82 100.00 100.00 100.00 99.61 97.73 100.00 100.00 100.00 100.00 100.00 100.00 99.01 100.00 100.00 98.18 98.46 100.00 98.21 99.11 100.00 98.78 98.82 100.00 98.48 100.00 100.00 100.00 100.00 96.23 98.33 100.00 98.95 98.86 99.24 99.10 100.00 99.40 98.44 100.00 97.67 98.20 99.03 100.00 100.00 100.00 99.42 98.92 100.00 100.00 100.00 99.35 99.37 98.11 K alternative_donor CG13923,CG12022 chr3L + chr3L_1803324_1803432 chr3L_1803328_1803432 chr3L_1803433_1803567;chr3L_1803322_1803323 100.00 100.00 NA 100.00 NA 100.00 91.67 100.00 94.74 NA NA 93.33 NA 100.00 88.89 NA NA NA 100.00 91.67 NA NA 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 88.89 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 94.44 NA 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 93.33 100.00 95.00 K intron_retention CG11158 chrX + chrX_13577222_13577278 chrX_13577221_13577222;chrX_13577278_13577279 chrX_13576958_13577221;chrX_13577279_13577374 29.29 18.75 25.00 53.85 35.71 40.00 33.33 28.57 16.67 30.77 25.00 31.82 NA 50.00 25.00 25.00 25.00 25.00 36.36 33.33 NA 27.27 33.33 17.39 NA NA 38.46 30.00 30.43 NA 51.85 NA 19.05 26.32 NA NA 16.67 25.93 32.00 43.48 NA 23.08 NA 11.11 22.22 25.00 17.65 NA 38.46 33.33 54.55 NA 50.00 NA 42.86 22.73 26.67 40.00 K jcn_only_AD alt,I_chr3R_13503901_13504925,RI_chr3R_13503901_13505368,I_chr3R_13503901_13507824 chr3R - chr3R_13503901_13508178;chr3R_13503901_13508123;chr3R_13503901_13508180 chr3R_13503901_13507816 chr3R_13503801_13503900;chr3R_13508181_13508234 1.92 2.08 1.14 1.73 1.45 1.37 4.40 2.20 1.62 NA 0.00 1.49 1.75 1.32 1.06 6.14 1.52 0.00 7.06 4.23 0.00 0.00 0.00 3.85 0.00 0.96 0.00 8.70 NA 15.38 7.02 NA 20.69 4.26 NA NA 0.00 0.00 7.69 5.13 NA 3.45 1.35 9.09 3.85 NA NA NA 4.69 3.33 4.35 4.17 15.00 NA 1.06 NA 0.00 29.03 N alternative_acceptor CG8108,EI_chr3L_9859462_9859590 chr3L + chr3L_9859462_9860377;chr3L_9859462_9860413 chr3L_9859462_9859590 chr3L_9859414_9859461;chr3L_9860414_9860844 18.75 13.54 22.58 37.33 18.03 16.95 38.96 28.09 19.67 19.57 16.13 17.56 28.00 21.67 14.77 43.33 21.67 11.76 25.00 25.66 17.74 18.92 17.14 14.74 18.06 22.22 22.92 22.81 19.35 20.90 53.49 18.42 14.86 26.37 17.14 18.75 12.32 12.12 8.28 23.66 16.13 20.90 18.97 27.27 11.76 18.18 17.20 20.41 22.61 17.14 17.32 20.37 8.33 8.64 20.83 10.59 9.26 14.29 K jcn_only_AA Pur-alpha,I_chr4_581447_585166 chr4 + chr4_578927_580723 chr4_578927_580720 chr4_578907_578926;chr4_580724_580926 96.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 96.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N alternative_donor CG17760 chr2R + chr2R_8513482_8514257;chr2R_8513731_8514257 chr2R_8513642_8514257 chr2R_8514258_8514421;chr2R_8513465_8513481 85.71 90.91 83.33 75.00 NA 77.78 72.00 87.80 90.14 NA 100.00 88.89 75.00 90.00 100.00 85.45 87.50 75.00 82.35 90.00 85.71 100.00 82.35 87.50 80.00 83.33 80.00 NA NA 85.71 83.33 NA 80.00 72.97 91.67 90.00 100.00 75.00 NA 83.33 100.00 84.62 94.12 100.00 NA 84.62 100.00 66.67 82.93 81.82 86.67 90.00 NA NA 92.86 88.89 100.00 80.00 K intron_retention CG6293,Bruce chr3R - chr3R_6136241_6137183 chr3R_6136240_6136241;chr3R_6137183_6137184 chr3R_6135621_6136240;chr3R_6137184_6137328 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.22 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.27 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16107821_16107893 chr3L_16107820_16107821;chr3L_16107893_16107894 chr3L_16107721_16107820;chr3L_16107894_16107943 100.00 NA 100.00 NA NA NA 100.00 NA 100.00 95.00 100.00 94.87 NA NA NA NA NA NA NA 100.00 92.31 100.00 100.00 100.00 100.00 100.00 90.00 91.67 100.00 100.00 NA 100.00 96.55 100.00 88.89 100.00 100.00 100.00 93.33 100.00 90.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 K intron_retention mthl4 chr2R - chr2R_13333425_13333481 chr2R_13333424_13333425;chr2R_13333481_13333482 chr2R_13333256_13333424;chr2R_13333482_13333736 0.00 0.00 0.00 7.50 0.00 0.00 0.00 3.28 2.11 NA 0.00 4.17 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA NA NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 3.85 0.00 6.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 4.00 0.00 0.93 0.00 K intron_retention Rbf chrX - chrX_693047_693348 chrX_693046_693047;chrX_693348_693349 chrX_692311_693046;chrX_693349_693680 0.00 0.00 0.00 3.23 4.00 0.00 5.26 0.00 0.00 0.00 NA 2.27 0.00 0.00 0.00 0.00 0.00 10.53 0.00 0.00 NA 9.30 3.17 4.35 0.00 0.00 2.08 NA 0.00 0.00 10.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 NA 2.13 0.00 3.85 0.00 7.41 0.00 NA 0.00 2.04 2.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Flo,I_chr2R_11456012_11456623 chr2R - chr2R_11456012_11456623 chr2R_11456012_11456255;chr2R_11456332_11456623 chr2R_11456256_11456331 chr2R_11455912_11456011;chr2R_11456624_11456723 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K multi_cassette CG14995,I_chr3L_4095875_4097205,I_chr3L_4096047_4096903 chr3L - chr3L_4096068_4097506 chr3L_4096068_4096903;chr3L_4096979_4097205;chr3L_4097335_4097506 chr3L_4096904_4096978;chr3L_4097206_4097334 chr3L_4095972_4096067;chr3L_4097507_4097804 100.00 100.00 NA NA NA NA NA NA 100.00 NA NA 88.89 NA NA NA NA NA NA NA 100.00 NA 83.33 NA NA NA NA 100.00 NA 83.33 NA 75.00 83.33 83.33 NA 100.00 100.00 100.00 100.00 80.00 100.00 NA NA NA 100.00 100.00 NA 80.00 NA 80.00 100.00 85.71 NA NA 100.00 NA 100.00 NA 100.00 K alternative_donor CG11486,RE_chr3L_3084894_3085203 chr3L + chr3L_3071298_3073080;chr3L_3071308_3073080 chr3L_3071190_3073080 chr3L_3073081_3073149;chr3L_3071183_3071189 79.66 NA 80.00 81.82 NA NA 75.00 73.33 NA NA NA 75.00 87.50 NA 72.73 79.31 NA NA NA 86.67 NA NA NA NA NA NA NA NA NA NA 63.64 NA NA 88.24 NA NA NA NA NA 62.50 NA 80.00 NA NA NA NA NA NA 86.21 NA NA NA NA NA NA NA NA NA K intron_retention RpL34b,CG9356 chr3R - chr3R_5226601_5226663 chr3R_5226600_5226601;chr3R_5226663_5226664 chr3R_5225976_5226600;chr3R_5226664_5226744 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.09 0.00 0.03 0.00 0.00 0.06 0.03 0.05 0.00 0.00 0.07 0.09 0.00 0.00 0.04 0.03 0.06 0.09 0.25 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.04 0.04 0.08 0.00 0.00 0.00 0.05 0.09 0.00 0.05 0.13 0.09 0.02 0.00 0.00 0.03 0.06 0.00 0.00 0.05 K alternative_donor CG4433,I_chr3R_15845478_15846094 chr3R - chr3R_15845478_15846069;chr3R_15845478_15846006 chr3R_15845478_15846094 chr3R_15845378_15845477;chr3R_15846095_15846194 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 1.28 0.00 1.14 0.00 0.00 1.69 2.50 0.00 0.00 0.00 2.59 2.22 0.00 0.00 0.00 0.00 0.00 1.30 1.61 0.00 0.00 1.75 0.00 1.82 0.00 0.00 2.27 0.79 1.22 0.91 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 2.04 1.96 0.00 0.00 0.00 1.64 0.00 K alternative_acceptor klett chrX - chrX_21499737_21501093 chrX_21500597_21501093 chrX_21501094_21501123;chrX_21499389_21499736 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 97.67 98.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 98.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Gprk2 chr3R + chr3R_27280487_27280928 chr3R_27280486_27280487;chr3R_27280928_27280929 chr3R_27280297_27280486;chr3R_27280929_27281177 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 0.00 0.00 6.90 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K alternative_donor RI_chr3L_707623_707678,CkIIalpha-i3,CG13896,RI_chr3L_711692_711744 chr3L - chr3L_711688_711746 chr3L_711688_711744 chr3L_711592_711687;chr3L_711747_711763 100.00 NA NA NA NA NA 88.89 100.00 91.67 NA NA NA 88.89 NA NA NA NA 100.00 90.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention CG10153,RI_chr2R_10644944_10645110 chr2R - chr2R_10645056_10645110 chr2R_10645055_10645056;chr2R_10645110_10645111 chr2R_10645004_10645055;chr2R_10645111_10645175 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5794,I_chr3R_20475643_20475715 chr3R - chr3R_20475643_20475715 chr3R_20475642_20475643;chr3R_20475715_20475716 chr3R_20475543_20475642;chr3R_20475716_20475736 64.29 NA NA 91.67 NA NA 66.67 64.29 62.50 NA NA 56.25 NA NA NA 75.00 77.78 NA NA 54.55 NA 48.00 66.67 60.00 NA NA 63.64 87.50 75.00 76.92 53.85 NA 100.00 69.23 NA 84.62 61.11 NA NA 62.50 NA 43.75 54.55 63.64 NA NA NA 65.00 50.00 NA NA NA NA NA 66.67 NA NA NA N jcn_only_AA Trc8 chr3R - chr3R_25326236_25326440;chr3R_25326221_25326440 chr3R_25325222_25326440 chr3R_25326441_25326615 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA fal,I_chr3L_19289660_19290145 chr3L + chr3L_19290313_19290378 chr3L_19290313_19290376 chr3L_19290146_19290312;chr3L_19290379_19290548 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.42 100.00 100.00 99.08 98.18 100.00 100.00 98.55 100.00 100.00 98.08 100.00 98.25 100.00 100.00 98.77 98.31 98.08 96.55 100.00 97.87 100.00 98.55 100.00 100.00 100.00 100.00 100.00 97.85 100.00 96.55 100.00 100.00 99.22 100.00 100.00 100.00 100.00 97.44 98.33 100.00 100.00 98.72 100.00 100.00 100.00 98.90 100.00 98.46 100.00 K alternative_donor RpL28,RI_chr3L_3221710_3221877,I_chr3L_3221982_3222744,snoRNA:Or-CD11c,snoRNA:Or-CD11b,snoRNA:Or-CD11a,I_chr3L_3222575_3222787 chr3L - chr3L_3221982_3222787;chr3L_3221982_3222152;chr3L_3221982_3222574;chr3L_3221982_3222926;chr3L_3221982_3222365 chr3L_3221982_3222847 chr3L_3221882_3221981;chr3L_3222927_3222958 1.64 3.23 0.63 0.28 0.97 0.44 2.05 0.53 2.44 3.30 1.17 2.11 1.64 1.96 0.39 2.24 0.99 0.93 0.44 0.85 0.66 4.38 4.41 7.94 7.89 0.56 9.52 4.35 3.42 0.86 0.97 0.23 0.22 0.39 5.56 3.53 10.20 9.76 4.17 0.90 1.03 0.42 0.00 2.56 0.31 1.03 6.00 0.29 0.51 7.69 7.14 2.27 1.76 7.89 0.65 7.14 5.88 0.21 K intron_retention glo,REI_chr3R_7644679_7644932,RI_chr3R_7644683_7644880,I_chr3R_7647556_7647628 chr3R - chr3R_7642267_7642333 chr3R_7642266_7642267;chr3R_7642333_7642334 chr3R_7641563_7642266;chr3R_7642334_7642479 0.00 0.00 2.25 0.00 1.59 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 2.70 1.06 1.14 0.00 NA 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 4.46 2.44 0.00 0.00 1.64 0.00 0.62 0.00 0.00 3.49 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.94 0.00 0.00 0.00 K intron_retention Galpha49B,I_chr2R_8501587_8501648,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8500357_8503411 chr2R_8500356_8500357;chr2R_8503411_8503412 chr2R_8500333_8500356;chr2R_8503412_8503586 26.19 12.50 38.10 22.22 30.43 23.81 25.00 27.78 25.68 NA 34.62 50.00 29.17 36.84 36.00 31.03 54.55 52.63 35.00 26.19 39.13 NA 21.88 30.00 35.00 33.33 12.50 15.79 40.00 20.00 43.48 NA 23.08 28.26 NA 36.36 17.65 25.00 22.22 12.50 NA 31.43 36.84 13.51 NA 0.00 NA 13.33 24.32 17.65 20.00 35.71 NA NA 25.81 23.53 14.29 NA K intron_retention R_chr2R_8737740_8756454,noncoding_6418 chr2R + chr2R_8756513_8756728 chr2R_8756512_8756513;chr2R_8756728_8756729 chr2R_8756463_8756512;chr2R_8756729_8756815 98.00 100.00 98.31 100.00 100.00 98.18 98.13 99.10 99.22 98.00 97.37 99.02 100.00 98.33 98.41 100.00 98.04 97.44 98.55 97.09 97.78 100.00 92.54 98.68 97.73 100.00 98.36 92.31 98.11 100.00 98.44 97.37 100.00 95.74 97.83 97.83 96.55 94.23 98.28 97.78 97.87 97.09 100.00 92.31 97.78 96.30 95.00 97.44 96.33 92.00 95.95 97.92 97.73 97.92 98.67 94.44 98.75 98.21 K alternative_last_exon CG4351,CG12714 chrX - chrX_12995575_13005666 chrX_13005447_13005666 chrX_12994918_12995574 chrX_13005393_13005446 chrX_13005667_13006288 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 2.22 0.00 0.00 3.03 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 3.03 3.57 0.00 0.00 3.70 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 K jcn_only_AD CG6597 chr3L + chr3L_20295938_20296166;chr3L_20295603_20296166 chr3L_20295972_20296166 chr3L_20296167_20296215;chr3L_20295573_20295602 0.00 NA NA 0.00 0.00 NA 0.00 0.00 1.75 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 2.22 4.76 8.33 0.00 0.00 NA 0.00 NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 NA 3.03 0.00 0.00 0.00 NA NA 0.00 2.08 NA NA NA NA NA 0.00 NA NA 0.00 K intron_retention Rap2l chr2R + chr2R_19952634_19952705 chr2R_19952633_19952634;chr2R_19952705_19952706 chr2R_19952516_19952633;chr2R_19952706_19952928 2.96 0.00 5.06 4.07 0.00 4.84 1.80 3.28 6.14 0.00 0.00 1.48 0.00 2.90 2.63 2.50 4.92 1.39 1.96 3.02 2.22 0.00 1.69 3.51 5.06 2.60 4.71 8.89 27.69 1.49 2.94 3.23 3.08 2.96 5.63 1.47 9.52 0.00 3.96 3.10 2.04 1.57 6.25 9.23 4.48 3.95 3.25 3.75 2.52 4.30 2.83 3.28 1.02 1.75 4.76 3.57 1.92 0.88 K intron_retention I_chr2L_8029734_8029787,Cka,CG7429 chr2L + chr2L_8036299_8036381 chr2L_8036298_8036299;chr2L_8036381_8036382 chr2L_8035821_8036298;chr2L_8036382_8036576 7.95 8.79 5.47 12.82 4.72 11.93 3.95 7.74 6.33 6.67 6.03 8.93 8.70 9.30 10.20 10.00 6.52 6.52 9.57 6.15 6.90 8.74 5.21 11.82 10.96 8.74 17.65 10.45 6.25 5.92 8.13 5.38 2.99 7.36 6.14 3.07 8.75 8.57 9.93 5.32 5.69 7.95 8.08 4.72 7.41 8.20 7.41 7.83 12.44 8.57 10.00 11.86 8.54 3.49 10.94 6.76 12.50 7.25 K jcn_only_AD alc chr2R - chr2R_5023211_5023269 chr2R_5023211_5023265 chr2R_5023142_5023210;chr2R_5023270_5023364 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.91 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 K intron_retention Axn,I_chr3R_25849563_25849626 chr3R + chr3R_25859466_25859526 chr3R_25859465_25859466;chr3R_25859526_25859527 chr3R_25859321_25859465;chr3R_25859527_25859847 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 1.72 0.00 0.00 0.00 0.00 5.56 NA 0.00 0.00 3.85 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N cassette CG42574,I_chr3R_618802_618939,I_chr3R_621543_625413,I_chr3R_621546_625413 chr3R - chr3R_620787_625413;chr3R_620787_622210 chr3R_620787_621458;chr3R_621546_625413,chr3R_621546_622210 chr3R_621459_621545 chr3R_618940_620786;chr3R_625414_625513 29.03 33.33 17.78 52.94 23.53 17.65 22.47 30.30 30.69 27.08 21.21 57.53 7.14 33.33 36.11 35.90 29.03 32.00 20.00 53.19 22.86 32.14 30.16 41.07 35.85 19.61 26.47 29.66 22.09 26.03 33.90 22.22 20.39 32.43 27.12 42.67 29.91 27.12 26.74 33.77 16.67 29.55 27.27 24.53 42.11 32.00 25.00 28.17 36.84 28.57 26.03 20.00 41.67 33.33 26.83 35.00 33.33 27.78 K intron_retention Hsp60 chrX + chrX_11005812_11005829 chrX_11005811_11005812;chrX_11005829_11005830 chrX_11005508_11005811;chrX_11005830_11006341 100.00 99.83 100.00 100.00 99.61 100.00 100.00 100.00 100.00 99.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.83 100.00 100.00 99.85 99.55 100.00 100.00 99.79 99.85 100.00 99.71 100.00 99.73 99.76 100.00 99.69 100.00 99.59 99.86 100.00 100.00 100.00 99.82 100.00 100.00 99.84 100.00 99.82 100.00 99.77 99.71 99.81 99.67 100.00 99.85 100.00 99.85 99.85 99.64 K intron_retention Vps33B,RI_chr3R_21301568_21301702,I_chr3R_21310025_21310086 chr3R + chr3R_21299451_21299507 chr3R_21299450_21299451;chr3R_21299507_21299508 chr3R_21299350_21299450;chr3R_21299508_21299826 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 5.13 0.00 0.00 0.00 0.00 NA 0.00 5.56 0.00 0.00 6.67 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 K jcn_only_AA RpS16,RI_chr2R_18493796_18494013,I_chr2R_18494146_18494441,snoRNA:Me28S-G2173 chr2R + chr2R_18494146_18494441 chr2R_18494146_18494438 chr2R_18494046_18494145;chr2R_18494442_18494541 99.99 99.99 99.99 99.99 99.99 100.00 100.00 100.00 100.00 100.00 100.00 99.99 100.00 100.00 100.00 99.99 100.00 100.00 99.98 99.99 99.98 99.97 100.00 100.00 100.00 99.98 99.98 99.95 100.00 100.00 100.00 99.98 100.00 99.99 100.00 100.00 99.99 99.99 99.99 99.96 100.00 99.97 99.98 99.99 100.00 100.00 99.99 100.00 100.00 99.99 100.00 100.00 99.99 99.98 100.00 99.98 99.99 99.98 K intron_retention I_chr3R_11826508_11826910,GATAe chr3R + chr3R_11842288_11842430 chr3R_11842287_11842288;chr3R_11842430_11842431 chr3R_11841950_11842287;chr3R_11842431_11843364 88.89 81.25 NA 70.00 NA NA 91.67 92.31 95.83 NA NA 90.00 100.00 100.00 NA 100.00 NA 88.89 90.91 82.35 NA 76.92 87.50 NA NA 88.89 NA NA NA NA NA NA NA 91.67 NA NA NA NA 88.89 NA NA 94.74 NA 88.89 NA NA NA NA 86.67 NA 90.91 88.89 NA NA 88.89 NA NA NA K intron_retention CG14253 chr3R + chr3R_22810359_22810426 chr3R_22810358_22810359;chr3R_22810426_22810427 chr3R_22810217_22810358;chr3R_22810427_22811124 0.00 0.00 0.00 0.25 0.00 0.00 0.13 0.41 0.00 0.00 0.00 0.13 0.00 0.00 0.17 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 2.04 0.45 0.00 0.00 0.00 0.00 0.00 0.43 1.27 0.19 0.00 0.00 0.22 1.66 0.00 0.00 0.00 1.21 0.56 0.28 0.42 0.00 0.59 0.37 0.00 0.00 0.00 0.00 0.00 0.35 2.28 K intron_retention tsu chr2R + chr2R_4998462_4998550 chr2R_4998461_4998462;chr2R_4998550_4998551 chr2R_4998109_4998461;chr2R_4998551_4999122 0.33 0.00 0.72 0.60 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.68 0.68 0.00 0.39 0.98 0.57 0.00 0.00 0.91 0.00 0.81 0.00 4.67 3.25 1.33 0.00 0.40 0.00 NA 0.00 1.01 0.00 1.05 0.71 0.00 0.21 0.00 0.27 0.66 0.00 0.17 0.74 0.00 0.65 0.73 0.61 0.48 2.27 0.58 0.43 0.00 0.44 0.00 0.17 K intron_retention MRP,F_chr2L_12727117_12736035 chr2L + chr2L_12731067_12737958 chr2L_12731066_12731067;chr2L_12737958_12737959 chr2L_12730998_12731066;chr2L_12737959_12738176 71.43 69.23 66.67 85.71 NA NA 86.67 76.19 90.91 NA NA 35.71 90.00 NA 75.00 93.33 NA NA NA 70.00 64.71 100.00 85.19 76.92 100.00 NA 68.75 88.89 60.00 70.00 NA NA 90.91 68.42 NA 73.91 63.64 NA 66.67 76.19 NA 71.43 NA 71.43 NA 60.00 NA 71.43 59.09 NA 62.50 81.82 46.67 63.64 77.78 NA NA 41.67 K intron_retention Ac76E,I_chr3L_19966672_19966735,chr3L_19968880_19969189.0 chr3L + chr3L_19968576_19969190 chr3L_19968575_19968576;chr3L_19969190_19969191 chr3L_19968471_19968575;chr3L_19969191_19969416 16.67 NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG33111,I_chr3R_19633752_19633821,eIF4G2 chr3R - chr3R_19633752_19643948 chr3R_19633751_19633752;chr3R_19643948_19643949 chr3R_19633652_19633751;chr3R_19643949_19644333 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG6838,I_chr3L_22709306_22709668 chr3L - chr3L_22709303_22709397 chr3L_22709302_22709303;chr3L_22709397_22709398 chr3L_22709206_22709302;chr3L_22709398_22709514 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.83 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 K alternative_acceptor Eno,I_chr2L_1726650_1727645,I_chr2L_1726656_1727485,EI_chr2L_1727403_1727645,I_chr2L_1728229_1728302 chr2L - chr2L_1726656_1727645;chr2L_1726650_1727645;chr2L_1727559_1727645 chr2L_1727403_1727645 chr2L_1727646_1727735;chr2L_1726556_1726649 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CdGAPr chr2L - chr2L_19777015_19777081 chr2L_19777021_19777081 chr2L_19777082_19778946;chr2L_19776320_19777014 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.68 97.78 100.00 100.00 100.00 100.00 100.00 99.01 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Df31,RE_chr2L_21628206_21629662,I_chr2L_21628206_21629666,I_chr2L_21628210_21628515,I_chr2L_21628210_21628944,I_chr2L_21628210_21629216,EI_chr2L_21628210_21629715,REI_chr2L_21628210_21629884,I_chr2L_21628224_21629666,I_chr2L_21628734_21629666 chr2L - chr2L_21628210_21629216;chr2L_21628210_21629666;chr2L_21628210_21628515;chr2L_21628210_21628944;chr2L_21628210_21629884 chr2L_21628210_21629715 chr2L_21628124_21628209;chr2L_21629885_21629918 0.02 0.00 0.00 0.18 0.08 0.00 0.11 0.05 0.00 0.08 0.07 0.04 0.00 0.00 0.00 0.05 0.07 0.00 0.06 0.02 0.00 0.31 0.05 0.13 0.00 0.32 0.27 0.21 0.12 0.24 0.08 0.08 0.18 0.00 0.00 0.10 0.06 0.00 0.00 0.00 0.12 0.00 0.08 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.15 0.06 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG5594,CG2812 chr2R + chr2R_19796155_19797200 chr2R_19796169_19797200 chr2R_19797201_19797332;chr2R_19796020_19796154 3.78 2.41 6.54 4.66 4.50 4.62 5.39 9.13 3.77 6.35 5.75 3.91 3.05 3.36 3.09 3.28 1.77 5.19 3.62 4.80 6.45 2.27 4.50 4.05 4.59 1.77 2.22 1.25 2.63 2.08 3.45 6.00 5.49 5.18 4.17 3.60 3.78 0.74 2.11 5.24 3.95 4.52 2.86 2.86 1.65 5.30 1.77 2.77 4.85 2.20 3.54 1.85 3.95 5.88 4.35 1.85 6.98 0.57 K intron_retention CG2694,I_chrX_2608271_2608320,I_chrX_2609471_2609546,RI_chrX_2622297_2622430,RI_chrX_2622435_2622577 chrX + chrX_2608244_2608320 chrX_2608243_2608244;chrX_2608320_2608321 chrX_2608171_2608243;chrX_2608321_2608420 60.00 NA NA NA NA NA NA NA 62.50 NA NA 81.82 NA NA NA 53.85 NA NA 54.55 52.94 NA NA 42.86 NA NA NA NA NA NA NA 76.47 NA NA 70.00 NA NA 72.73 NA 66.67 60.00 NA 50.00 NA NA NA NA NA 58.33 53.85 NA 88.89 NA NA NA NA NA NA 60.00 K intron_retention CG7639 chr2R - chr2R_10876379_10876439 chr2R_10876378_10876379;chr2R_10876439_10876440 chr2R_10876267_10876378;chr2R_10876440_10876983 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.38 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG11486,RE_chr3L_3084894_3085203 chr3L + chr3L_3071298_3073080;chr3L_3071190_3073080 chr3L_3071308_3073080 chr3L_3073081_3073149;chr3L_3071183_3071189 17.43 NA 20.00 18.18 NA NA 16.67 13.33 NA NA NA 25.00 12.50 NA 18.18 13.79 NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA 27.27 NA NA 11.76 NA NA NA NA NA 37.50 NA 20.00 NA NA NA NA NA NA 6.90 NA NA NA NA NA NA NA NA NA K intron_retention CG17660 chr2L - chr2L_1708678_1708820 chr2L_1708677_1708678;chr2L_1708820_1708821 chr2L_1708640_1708677;chr2L_1708821_1708909 1.04 2.50 1.56 0.00 1.85 3.03 2.60 0.00 1.52 2.70 3.57 1.83 0.00 5.26 2.90 0.00 0.00 0.00 0.00 2.61 0.00 1.94 0.00 0.00 0.00 0.00 1.04 1.61 3.33 0.00 2.90 3.85 1.37 2.22 0.00 1.47 2.34 0.00 1.41 0.95 3.92 0.91 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 1.90 0.00 2.35 0.00 0.00 2.82 3.57 0.00 K intron_retention mbl,I_chr2R_13163569_13203579 chr2R + chr2R_13239811_13246810 chr2R_13239810_13239811;chr2R_13246810_13246811 chr2R_13239634_13239810;chr2R_13246811_13247050 0.00 0.00 7.69 3.85 NA 0.00 0.00 10.87 0.00 0.00 NA 5.17 NA 0.00 5.41 0.00 0.00 0.00 4.35 3.03 0.00 14.29 6.67 NA NA 0.00 0.00 NA 0.00 0.00 4.44 NA 0.00 5.56 NA 5.00 3.70 NA 0.00 8.33 NA 2.13 0.00 0.00 NA 0.00 NA 0.00 4.65 NA NA NA NA NA 2.94 NA NA 0.00 K alternative_donor RpL8,I_chr3L_2587513_2587750,I_chr3L_2587600_2587750,RI_chr3L_2587690_2587750,I_chr3L_2589746_2592161 chr3L + chr3L_2587514_2587750;chr3L_2587690_2587750 chr3L_2587600_2587750 chr3L_2587751_2587850;chr3L_2587500_2587513 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.03 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.02 0.02 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.04 0.06 0.04 0.04 0.10 0.00 0.04 0.05 0.00 K intron_retention CG10337 chr2L - chr2L_19546426_19546646 chr2L_19546425_19546426;chr2L_19546646_19546647 chr2L_19546203_19546425;chr2L_19546647_19547031 0.00 0.00 0.00 0.00 0.00 0.00 9.68 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 6.06 0.00 0.00 0.00 1.43 0.00 6.67 0.00 0.00 0.00 NA 0.00 7.46 0.00 0.00 5.56 0.00 NA 2.63 0.00 8.00 0.00 0.00 0.00 6.25 0.00 3.77 0.00 0.00 NA 0.00 0.00 0.00 0.00 7.32 0.00 0.00 0.00 3.85 0.00 0.00 9.09 NA K jcn_only_AA ifc,I_chr2L_5986893_5987347,RI_chr2L_5987175_5987347,noncoding_1271 chr2L + chr2L_5986893_5987615 chr2L_5986893_5987347 chr2L_5986793_5986892;chr2L_5987616_5987779 0.57 1.09 0.27 0.00 0.37 0.00 0.22 0.59 0.72 0.00 1.56 1.09 1.74 0.33 0.97 0.68 0.82 0.00 0.62 0.53 0.35 0.34 0.67 0.67 2.02 0.00 1.32 2.54 0.00 0.00 1.00 3.68 1.04 0.19 0.45 0.00 0.31 1.07 1.11 0.28 2.11 0.33 0.44 1.32 1.10 0.00 0.00 1.52 0.57 1.07 0.30 0.99 0.00 0.00 0.53 1.57 0.71 0.00 K jcn_only_AA Nmnat chr3R + chr3R_20772018_20772675;chr3R_20772018_20772605 chr3R_20772018_20772197 chr3R_20771916_20772017;chr3R_20772676_20772744 9.52 NA NA NA NA NA 4.55 0.00 12.50 40.91 NA 25.00 NA NA NA NA NA NA NA 4.00 NA 0.00 12.12 NA NA NA 0.00 NA 0.00 NA 4.55 10.00 NA 0.00 NA 0.00 8.70 NA NA 15.38 9.52 17.39 NA 19.35 13.04 5.13 NA 6.45 4.00 9.09 20.00 NA 14.81 13.64 NA 9.52 14.71 14.29 K alternative_donor dorsal,RI_chr2L_17438018_17439189,I_chr2L_17442335_17442399,FI_chr2L_17449369_17450215,RI_chr2L_17450002_17450219 chr2L - chr2L_17442335_17442403 chr2L_17442335_17442399 chr2L_17442235_17442334;chr2L_17442404_17442499 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 1.23 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.98 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 1.02 0.00 0.00 0.00 0.00 1.37 0.00 0.00 K intron_retention Oda,I_chr2R_8055426_8055498,RI_chr2R_8057550_8061595 chr2R - chr2R_8055433_8055498 chr2R_8055432_8055433;chr2R_8055498_8055499 chr2R_8053976_8055432;chr2R_8055499_8055598 0.00 0.00 0.00 0.00 0.58 1.56 0.81 0.56 0.00 0.00 0.00 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 2.53 0.16 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 K cassette mys,I_chrX_7958795_7961094 chrX + chrX_7958795_7961094;chrX_7959566_7961094 chrX_7958795_7960130,chrX_7959566_7960130;chrX_7960216_7961094 chrX_7960131_7960215 chrX_7958695_7958794;chrX_7961095_7961194 16.80 20.83 16.67 9.88 23.57 14.72 9.05 13.20 18.24 10.75 8.02 7.30 31.91 24.00 19.21 8.26 34.58 14.44 21.07 25.72 10.68 10.55 13.26 14.00 15.79 33.33 15.79 21.57 8.24 22.95 22.15 18.64 22.47 16.24 18.34 16.80 17.17 13.37 18.38 20.83 20.00 16.06 15.46 15.03 19.67 22.41 17.74 25.00 11.71 6.67 14.81 20.26 6.34 17.17 19.49 17.56 6.94 7.55 K alternative_donor CG31120,I_chr3R_20743232_20743287 chr3R - chr3R_20743232_20743430 chr3R_20743232_20743287 chr3R_20743132_20743231;chr3R_20743431_20743491 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 4.76 NA NA NA NA NA NA NA NA NA NA 9.09 0.00 NA NA NA NA NA NA NA 6.67 NA 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 K multi_cassette Nos,I_chr2L_10826086_10826539 chr2L - chr2L_10804897_10812286 chr2L_10804897_10805618;chr2L_10805744_10805984;chr2L_10807128_10807290;chr2L_10807625_10812286 chr2L_10805619_10805743;chr2L_10805985_10807127;chr2L_10807291_10807624 chr2L_10804830_10804896;chr2L_10812287_10812302 100.00 NA NA NA NA NA NA 50.00 50.00 100.00 NA NA NA NA NA 100.00 NA NA NA 100.00 NA 60.00 100.00 100.00 50.00 NA 50.00 NA 66.67 100.00 NA 75.00 100.00 NA 100.00 100.00 50.00 100.00 100.00 NA 100.00 100.00 NA 100.00 50.00 100.00 100.00 75.00 NA NA 100.00 100.00 NA 50.00 NA 100.00 100.00 100.00 K jcn_only_AD MED26,RE_chr4_803564_803799,RI_chr4_803872_803924,I_chr4_807836_808089 chr4 - chr4_803872_803927 chr4_803872_803924 chr4_803800_803871;chr4_803928_804024 1.54 NA NA 1.79 NA NA 0.00 3.51 0.00 NA NA 0.00 8.70 0.00 0.00 1.59 NA NA 4.17 6.12 NA NA 8.33 NA NA 4.35 NA NA NA NA 7.89 NA NA 2.00 NA NA NA NA NA 0.00 NA 0.00 0.00 4.00 NA NA NA NA 1.49 NA 0.00 NA NA NA 0.00 NA NA NA K alternative_acceptor CG6459,RI_chr2R_13565425_13565874 chr2R - chr2R_13559312_13559369 chr2R_13559326_13559369 chr2R_13559370_13559714;chr2R_13558812_13559311 0.00 0.00 0.00 0.37 0.00 0.00 0.40 0.74 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 1.53 0.00 0.00 0.00 0.00 0.39 0.43 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 K intron_retention EF_chr2L_12038171_12038292,CG6766 chr2L - chr2L_12040380_12040437 chr2L_12040379_12040380;chr2L_12040437_12040438 chr2L_12040265_12040379;chr2L_12040438_12040698 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.97 NA 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG42303 chr3L + chr3L_2653658_2653717 chr3L_2653657_2653658;chr3L_2653717_2653718 chr3L_2652134_2653657;chr3L_2653718_2653906 0.00 0.00 NA 31.58 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA 6.67 0.00 NA NA NA NA 0.00 17.65 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 K alternative_donor CG1640,RI_chrX_13265127_13267895,I_chrX_13265553_13267895,I_chrX_13265618_13267895,RI_chrX_13266680_13267895,RI_chrX_13267529_13267895,I_chrX_13271541_13271890 chrX + chrX_13265401_13267895;chrX_13265248_13267895;chrX_13265094_13267895;chrX_13265295_13267895 chrX_13265560_13267895 chrX_13267896_13267973;chrX_13265065_13265093 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Cip4,I_chr3L_4363128_4363769,I_chr3L_4363386_4363987 chr3L - chr3L_4324451_4324921 chr3L_4324451_4324861 chr3L_4324284_4324450;chr3L_4324922_4324996 65.45 57.14 57.14 61.25 61.36 69.57 67.89 66.67 65.25 91.30 56.52 59.13 83.33 70.73 53.70 64.29 69.44 88.89 67.31 65.45 70.97 71.43 60.82 62.50 47.06 60.34 62.69 58.82 86.67 66.67 65.45 62.96 60.47 63.51 75.76 65.85 71.43 73.33 59.49 43.75 74.36 62.50 55.26 61.54 83.87 66.00 70.83 73.85 63.79 61.11 63.64 72.09 73.91 62.50 55.74 78.12 70.31 80.30 K intron_retention out chrX - chrX_19207472_19207557 chrX_19207471_19207472;chrX_19207557_19207558 chrX_19207345_19207471;chrX_19207558_19207566 0.00 NA NA NA NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 6.67 0.00 NA NA 3.70 0.00 NA 0.00 NA NA 3.03 0.00 NA NA 0.00 0.00 0.00 6.82 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention CG2065 chr2R + chr2R_3552015_3552079 chr2R_3552014_3552015;chr2R_3552079_3552080 chr2R_3551858_3552014;chr2R_3552080_3552339 0.00 0.00 0.00 3.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 1.03 3.45 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 3.64 3.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1968 chr2R + chr2R_5174443_5174500 chr2R_5174442_5174443;chr2R_5174500_5174501 chr2R_5174304_5174442;chr2R_5174501_5175132 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K cassette CG14657 chr3R - chr3R_645633_646054 chr3R_645633_645832;chr3R_645989_646054 chr3R_645833_645988 chr3R_645516_645632;chr3R_646055_647174 18.75 18.52 11.11 12.20 16.67 29.41 36.67 27.27 27.12 25.00 16.67 14.58 89.47 23.08 24.24 18.18 33.33 16.13 37.50 23.08 23.53 37.50 10.00 21.21 8.00 9.38 18.18 20.00 18.18 15.00 24.14 NA 7.69 31.25 17.86 0.00 12.50 14.71 13.79 19.35 12.50 22.64 35.00 16.13 NA 14.81 22.22 25.00 26.83 18.75 25.00 22.73 4.55 17.39 21.62 17.65 19.05 8.33 K intron_retention HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13162296_13163860 chrX_13162295_13162296;chrX_13163860_13163861 chrX_13161355_13162295;chrX_13163861_13163991 7.14 NA NA 7.14 NA NA NA NA NA NA NA NA 7.14 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention RI_chrX_8468338_8469380,I_chrX_8468338_8477573,CG12065,I_chrX_8469524_8477579,CE_chrX_8469528_8477573 chrX + chrX_8468441_8469383 chrX_8468440_8468441;chrX_8469383_8469384 chrX_8468351_8468440;chrX_8469384_8469480 10.81 7.69 21.43 3.39 4.26 13.16 16.95 6.25 10.48 11.54 0.00 15.28 5.26 8.89 17.07 9.57 12.20 13.79 8.33 8.24 10.81 6.50 11.27 12.50 20.51 26.19 20.51 21.43 25.00 5.26 9.26 13.79 10.00 10.14 10.87 11.90 9.76 10.00 8.00 28.57 22.58 7.32 9.52 13.79 10.71 13.56 2.94 20.45 9.52 7.84 11.48 11.11 17.86 8.33 10.42 14.58 6.15 12.68 K jcn_only_AD CG3829,I_chr2R_20874677_20875710,I_chr2R_20874711_20875717,I_chr2R_20875172_20875710,I_chr2R_20875497_20875710 chr2R + chr2R_20875497_20875710;chr2R_20875172_20875710;chr2R_20875350_20875710 chr2R_20874711_20875710 chr2R_20875711_20875810;chr2R_20874611_20874710 24.00 NA 21.15 17.65 36.00 15.62 23.08 16.67 22.06 NA 24.00 31.25 20.69 9.09 17.65 12.12 22.58 26.83 16.67 26.14 14.29 47.06 NA NA NA 25.64 NA NA 45.45 NA 50.00 NA NA 20.59 NA NA NA NA NA 48.15 NA 27.08 32.00 NA NA 72.73 NA 72.73 21.28 NA NA NA NA NA 28.57 NA NA 50.00 K intron_retention CG5188 chr2L + chr2L_10428931_10428985 chr2L_10428930_10428931;chr2L_10428985_10428986 chr2L_10428776_10428930;chr2L_10428986_10429659 0.00 NA NA 0.00 0.00 NA 4.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA NA 0.00 20.00 0.00 NA 0.00 NA 0.00 0.00 14.81 0.00 NA NA 0.00 0.00 NA 0.00 NA 0.00 0.00 K intron_retention Pp4-19C,I_chrX_20293932_20294672,RI_chrX_20293980_20294069,REI_chrX_20294004_20294672 chrX - chrX_20293980_20294069 chrX_20293979_20293980;chrX_20294069_20294070 chrX_20293904_20293979;chrX_20294070_20294083 87.50 NA 90.00 100.00 NA NA 87.50 92.31 90.00 NA NA 90.91 NA NA NA NA NA 63.64 87.50 92.86 NA 83.33 92.31 80.00 NA NA NA 87.50 72.73 87.50 NA NA 100.00 100.00 NA NA NA 90.00 NA 81.25 NA 71.43 NA 62.50 80.00 87.50 NA 90.91 71.43 87.50 NA NA NA NA NA NA NA 100.00 K jcn_only_AD E_chr4_592469_594231,Ephrin,I_chr4_595055_597604,RI_chr4_596272_596341 chr4 + chr4_592737_594238;chr4_592490_594238;chr4_592593_594238;chr4_592469_594238;chr4_592410_594238;chr4_592798_594238 chr4_592646_594238 chr4_594239_594331;chr4_592404_592409 0.00 0.00 4.35 1.39 0.00 0.00 1.05 0.00 1.16 NA NA 0.00 0.00 0.00 2.94 0.00 0.00 NA 0.00 1.61 0.00 NA 3.70 NA 0.00 0.00 3.03 NA NA NA 0.00 NA NA 5.06 0.00 0.00 NA NA NA 3.33 NA 1.61 0.00 0.00 NA NA NA NA 1.20 NA 2.70 0.00 NA NA 0.00 NA NA NA K alternative_acceptor CG9086,CEI_chrX_16859981_16861527,I_chrX_16861895_16862053 chrX - chrX_16861753_16862542 chrX_16861895_16862542 chrX_16862543_16862684;chrX_16861528_16861752 87.34 89.66 87.50 58.93 81.82 74.07 91.84 87.50 87.34 89.47 92.86 85.71 79.41 87.88 80.49 84.91 80.00 80.65 85.37 83.02 86.21 100.00 77.50 89.66 94.74 88.24 88.00 61.54 91.67 78.79 83.72 88.89 89.66 85.71 95.65 96.55 87.10 87.50 96.00 88.46 92.31 92.06 83.33 95.83 91.67 95.00 71.43 90.24 84.93 71.43 75.68 83.33 93.75 57.14 88.10 76.92 50.00 85.71 K intron_retention AT25722,CG3356 chr2R + chr2R_20086740_20086799 chr2R_20086739_20086740;chr2R_20086799_20086800 chr2R_20086019_20086739;chr2R_20086800_20087211 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG32016,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_975490_975549 chr4_975490_975546 chr4_975436_975489;chr4_975550_975646 93.42 92.11 97.78 89.06 90.00 88.89 96.10 90.74 91.67 NA 96.77 94.79 91.53 94.12 94.12 86.41 86.67 100.00 95.65 92.50 93.10 NA 95.35 96.67 100.00 95.56 89.36 NA 100.00 NA 85.00 96.43 100.00 90.72 89.74 92.86 NA 96.00 88.89 96.61 NA 87.80 89.47 95.00 NA 90.00 95.65 93.75 88.24 94.12 95.74 88.89 91.67 95.00 95.52 96.55 87.50 92.86 K jcn_only_AD CG8184,I_chrX_15620707_15620769 chrX + chrX_15617113_15617265;chrX_15617191_15617265 chrX_15617158_15617265 chrX_15617266_15618411;chrX_15615597_15617112 79.40 73.91 71.43 NA 69.57 75.86 85.00 85.71 82.46 87.50 NA 91.30 NA 78.57 78.79 71.88 NA 71.43 82.61 86.84 84.62 72.34 80.77 78.79 NA NA 74.36 80.49 81.13 85.71 71.43 NA 84.17 74.51 80.00 NA 77.94 68.97 78.26 83.78 NA 78.69 85.00 86.15 89.36 84.21 76.00 85.71 82.50 NA 76.92 88.00 74.19 NA 73.08 NA NA 72.00 K intron_retention CG7120,I_chr3L_8393044_8393116 chr3L + chr3L_8393790_8393848 chr3L_8393789_8393790;chr3L_8393848_8393849 chr3L_8393227_8393789;chr3L_8393849_8395118 9.52 NA NA NA NA NA NA 0.00 9.52 NA NA NA NA NA NA NA NA NA NA 0.00 NA 45.45 NA NA NA NA 27.27 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG13902,I_chr3L_840962_841041 chr3L - chr3L_840962_841041;chr3L_840991_841041 chr3L_840970_841041 chr3L_841042_841141;chr3L_840862_840961 5.43 5.41 0.00 3.64 NA 4.76 2.94 5.56 3.85 11.11 5.88 4.35 6.45 6.67 7.69 2.44 0.00 2.63 0.00 3.23 8.33 13.64 2.94 8.82 0.00 2.78 3.03 10.00 2.08 8.16 11.11 4.17 5.45 1.92 4.55 11.63 7.32 4.00 5.41 7.58 5.66 5.06 10.00 9.30 4.35 7.25 0.00 5.63 9.38 14.71 6.98 3.45 18.18 17.86 4.08 5.71 10.34 4.23 K intron_retention CG8709,I_chr2R_4027128_4027182,I_chr2R_4027682_4027747,RI_chr2R_4029534_4029599,I_chr2R_4030580_4030746,I_chr2R_4035901_4043493 chr2R - chr2R_4028119_4028185 chr2R_4028118_4028119;chr2R_4028185_4028186 chr2R_4028019_4028118;chr2R_4028186_4028252 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3415 chrX + chrX_16165130_16165473 chrX_16165129_16165130;chrX_16165473_16165474 chrX_16164853_16165129;chrX_16165474_16166261 0.00 0.00 0.00 1.96 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.86 0.00 1.43 0.00 0.57 0.00 0.00 0.00 0.00 1.49 0.00 2.38 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 K alternative_acceptor mbc,I_chr3R_19615584_19615649,I_chr3R_19625220_19625288 chr3R + chr3R_19625220_19625288 chr3R_19625220_19625285 chr3R_19625120_19625219;chr3R_19625289_19625372 97.78 94.12 96.15 98.44 88.89 96.00 97.92 97.96 98.48 100.00 96.55 98.21 96.43 96.67 100.00 97.22 97.37 100.00 97.14 98.39 97.14 95.24 96.15 96.36 96.88 95.65 97.92 100.00 100.00 100.00 96.55 100.00 95.24 97.73 100.00 96.43 100.00 95.83 100.00 97.92 95.83 94.03 95.83 97.37 100.00 100.00 100.00 100.00 98.00 96.97 96.15 100.00 100.00 100.00 100.00 97.78 100.00 90.91 K intron_retention CG11753 chr3R + chr3R_4479008_4479077 chr3R_4479007_4479008;chr3R_4479077_4479078 chr3R_4478941_4479007;chr3R_4479078_4479145 6.10 6.84 8.33 24.29 5.83 4.11 10.74 9.09 6.09 6.90 11.49 5.62 10.67 6.90 2.35 7.06 3.12 6.10 8.14 6.55 8.99 4.60 7.25 5.65 8.93 15.56 10.00 8.06 20.00 2.68 5.88 4.88 3.12 8.77 4.29 8.97 4.62 5.51 4.97 6.15 9.46 8.09 10.00 4.14 7.89 4.80 4.24 2.50 6.14 5.19 7.76 3.95 4.11 3.39 5.49 5.06 4.85 4.48 K jcn_only_AA tra2,psnoRNA:tra2-a,REFI_chr2R_10491644_10491701 chr2R - chr2R_10490382_10490665 chr2R_10490411_10490665 chr2R_10490666_10490794;chr2R_10490009_10490381 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG9776,CG9772 chr3R - chr3R_162125_162190 chr3R_162131_162190 chr3R_162191_163064;chr3R_161731_162124 99.20 98.28 96.55 98.41 96.67 100.00 96.63 98.63 98.00 100.00 100.00 98.81 98.18 100.00 100.00 100.00 100.00 100.00 100.00 99.34 100.00 98.99 100.00 98.95 100.00 95.45 98.59 97.87 97.40 100.00 100.00 100.00 100.00 97.50 100.00 100.00 98.53 100.00 100.00 99.20 98.86 98.89 100.00 98.77 100.00 98.75 98.51 99.08 100.00 100.00 98.86 100.00 96.43 96.00 100.00 100.00 98.91 96.46 K multi_cassette Rad23,I_chr4_328801_328879,RI_chr4_328916_330164 chr4 + chr4_328916_330164 chr4_328916_329056;chr4_329201_329274;chr4_329706_330164 chr4_329057_329200;chr4_329275_329705 chr4_328880_328915;chr4_330165_330259 96.88 100.00 100.00 39.13 100.00 94.12 96.88 100.00 97.73 100.00 100.00 85.71 85.71 94.12 100.00 96.97 100.00 100.00 100.00 96.88 100.00 100.00 96.30 94.74 91.67 78.95 100.00 92.31 100.00 100.00 95.24 100.00 95.24 96.55 92.86 93.33 100.00 100.00 92.86 96.15 91.67 96.97 94.12 95.65 90.00 94.12 100.00 92.31 96.77 100.00 100.00 100.00 92.86 92.86 100.00 100.00 95.24 100.00 K intron_retention CG11586 chr3L - chr3L_4262205_4262263 chr3L_4262204_4262205;chr3L_4262263_4262264 chr3L_4261291_4262204;chr3L_4262264_4262500 0.00 0.00 0.00 3.45 6.90 6.67 3.33 2.44 0.00 0.00 0.00 2.13 0.00 0.00 0.00 8.00 0.00 0.00 0.00 1.43 0.00 0.00 4.08 0.00 0.00 0.00 2.27 6.25 0.00 0.00 9.52 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 5.63 4.35 0.00 4.76 3.70 0.00 0.00 2.56 2.38 0.00 0.00 0.00 0.00 0.00 0.00 6.06 5.56 0.00 0.00 K intron_retention AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9003728_9004650 chrX_9003727_9003728;chrX_9004650_9004651 chrX_9003721_9003727;chrX_9004651_9005038 100.00 100.00 88.89 100.00 NA 100.00 91.67 100.00 100.00 NA NA 93.75 100.00 100.00 100.00 100.00 NA NA 90.00 94.44 NA NA 90.00 NA 100.00 100.00 90.00 NA 88.89 100.00 100.00 NA 100.00 91.67 100.00 92.31 NA NA NA NA 90.91 92.31 NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K jcn_only_AD Cht2,I_chr3L_1754361_1754605,I_chr3L_1754361_1754860 chr3L - chr3L_1754361_1755586;chr3L_1754361_1754605 chr3L_1754361_1754860 chr3L_1754261_1754360;chr3L_1755587_1755934 29.59 NA 29.17 6.06 43.48 42.86 NA 19.23 27.27 NA 21.74 21.74 NA 32.00 22.22 47.83 NA 17.39 30.00 31.03 NA NA NA NA NA 30.00 NA NA NA NA 33.33 NA NA 37.50 NA NA NA NA NA NA NA 24.39 NA NA NA NA NA NA 25.00 NA NA NA NA NA 37.50 NA NA NA K intron_retention RpL15 chr3LHet + chr3LHet_2397841_2398127 chr3LHet_2397840_2397841;chr3LHet_2398127_2398128 chr3LHet_2397802_2397840;chr3LHet_2398128_2398454 99.68 100.00 99.21 99.23 100.00 100.00 99.52 98.84 99.80 98.78 99.40 99.68 99.60 99.47 97.62 99.64 98.86 98.17 98.39 100.00 99.40 100.00 100.00 100.00 100.00 98.62 100.00 100.00 98.94 100.00 99.66 98.94 98.14 98.55 100.00 100.00 100.00 100.00 99.09 100.00 98.85 99.69 100.00 98.21 97.25 99.03 100.00 100.00 99.68 100.00 100.00 100.00 96.97 100.00 99.39 100.00 100.00 99.32 K intron_retention Wwox,I_chr2L_8000434_8000497,Spn28D chr2L - chr2L_8000033_8000107 chr2L_8000032_8000033;chr2L_8000107_8000108 chr2L_7999777_8000032;chr2L_8000108_8000236 3.45 3.45 0.00 25.00 0.00 0.00 0.00 5.88 8.70 3.85 6.67 4.00 NA 0.00 0.00 16.67 0.00 6.25 0.00 8.51 0.00 19.35 3.12 3.28 0.00 5.00 17.14 17.39 24.44 0.00 0.00 0.00 5.00 3.45 0.00 0.00 6.94 4.44 2.08 2.00 3.23 5.00 NA 5.71 5.56 10.26 4.00 3.70 13.79 4.69 1.79 0.00 0.00 5.88 0.00 0.00 2.70 0.00 K intron_retention cora,I_chr2R_15125277_15130573,I_chr2R_15129291_15129988 chr2R + chr2R_15130365_15130573 chr2R_15130364_15130365;chr2R_15130573_15130574 chr2R_15130209_15130364;chr2R_15130574_15130673 0.39 0.46 1.08 0.69 0.35 0.62 0.72 0.65 0.48 0.00 0.82 0.46 0.32 0.57 0.47 0.43 1.35 0.00 0.55 0.59 0.83 0.00 0.62 0.20 0.39 0.00 0.21 0.42 0.00 0.00 0.50 0.00 0.00 0.37 0.00 0.29 0.50 0.55 0.40 0.70 0.00 0.59 0.00 0.00 0.60 0.22 0.39 0.00 0.90 0.13 0.48 0.00 0.00 0.68 0.00 0.20 0.25 0.00 K intron_retention Trap1 chr2R - chr2R_2521454_2521515 chr2R_2521453_2521454;chr2R_2521515_2521516 chr2R_2521152_2521453;chr2R_2521516_2521564 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N cassette Inos,I_chr2R_3344353_3345211 chr2R - chr2R_3343582_3346113 chr2R_3343582_3343653;chr2R_3344353_3346113 chr2R_3343654_3344352 chr2R_3343339_3343581;chr2R_3346114_3346215 100.00 100.00 100.00 99.28 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K mutually_exclusive ens,I_chr3L_4130719_4131120 chr3L - chr3L_4127163_4129650,chr3L_4129789_4131120;chr3L_4127163_4130388,chr3L_4130644_4131120 chr3L_4127163_4128613,chr3L_4128974_4131120 chr3L_4129651_4129788;chr3L_4130389_4130643 chr3L_4128614_4128973 chr3L_4126989_4127162;chr3L_4131121_4131220 1.59 1.61 2.08 0.00 2.13 2.04 0.00 0.00 0.89 2.38 0.00 1.16 0.00 0.00 1.92 3.23 0.00 2.70 0.00 0.00 0.00 0.92 1.02 2.78 0.00 0.00 1.39 3.70 6.56 1.54 1.59 2.86 2.44 1.27 3.51 1.37 0.87 2.44 3.49 0.89 12.20 1.80 2.44 1.20 5.17 3.70 4.65 1.16 1.18 0.00 1.14 1.67 2.38 3.33 0.00 1.85 3.57 2.22 K jcn_only_AA CG8029,I_chr2R_5095165_5095256 chr2R + chr2R_5095165_5095256 chr2R_5095165_5095252 chr2R_5095083_5095164;chr2R_5095257_5095264 100.00 100.00 100.00 100.00 98.73 100.00 100.00 100.00 100.00 99.01 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.80 100.00 100.00 100.00 100.00 100.00 99.52 100.00 100.00 99.00 100.00 100.00 100.00 100.00 100.00 100.00 99.35 99.18 100.00 100.00 100.00 100.00 98.73 99.60 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 99.35 100.00 100.00 100.00 N jcn_only_AA stc chr2L + chr2L_15114214_15114299;chr2L_15114214_15114311 chr2L_15114214_15114448 chr2L_15114049_15114213;chr2L_15114449_15115753 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1526732_1527189 chr3L_1526731_1526732;chr3L_1527189_1527190 chr3L_1526660_1526731;chr3L_1527190_1527240 88.67 92.86 94.44 88.24 90.00 100.00 88.89 100.00 93.33 NA 80.95 37.93 100.00 93.33 100.00 88.00 100.00 92.86 88.89 75.61 64.71 72.73 88.46 77.78 92.31 NA 92.86 NA 84.62 71.43 92.86 NA 100.00 90.00 85.71 77.78 73.33 91.67 94.12 86.21 87.50 87.88 100.00 93.33 80.00 85.71 94.74 76.47 94.44 75.00 84.21 NA 69.23 71.43 100.00 90.00 76.92 76.92 K alternative_donor Anxb11,I_chrX_16314152_16314405,I_chrX_16314152_16315813 chrX - chrX_16314152_16316028;chrX_16314152_16316199 chrX_16314152_16316276 chrX_16314083_16314151;chrX_16316277_16316298 11.76 12.50 11.11 13.33 55.56 0.00 11.76 10.00 11.76 NA 10.00 3.85 8.33 0.00 10.00 5.88 0.00 33.33 0.00 10.00 12.50 21.43 12.50 12.50 0.00 14.29 0.00 NA 12.50 0.00 11.11 20.00 16.67 14.29 0.00 12.50 0.00 NA 14.29 0.00 NA 6.67 14.29 15.38 0.00 12.50 20.00 14.29 4.35 0.00 9.09 0.00 20.00 NA 23.08 20.00 16.67 27.27 K alternative_acceptor RN-tre chr2R - chr2R_9877474_9878070 chr2R_9877492_9878070 chr2R_9878071_9878197;chr2R_9877190_9877473 98.63 100.00 97.44 100.00 94.44 100.00 86.67 98.11 97.96 96.30 94.44 98.28 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 97.87 100.00 100.00 93.10 100.00 100.00 97.26 97.50 98.63 100.00 98.36 98.15 97.73 97.56 100.00 100.00 97.37 100.00 98.08 100.00 100.00 100.00 98.25 98.90 96.30 98.03 97.40 100.00 97.87 100.00 100.00 100.00 91.49 97.56 100.00 96.47 K alternative_donor RpL18A,I_chr2R_13434492_13434554,I_chr2R_13434492_13434576 chr2R - chr2R_13434492_13434576;chr2R_13434492_13434554 chr2R_13434492_13434913 chr2R_13434392_13434491;chr2R_13434914_13434994 99.91 100.00 99.93 99.84 99.94 99.96 99.72 99.94 99.94 100.00 100.00 99.93 99.88 99.94 99.94 99.91 99.93 100.00 100.00 99.97 100.00 99.68 98.97 99.77 99.52 100.00 98.77 99.77 99.15 99.84 99.91 99.89 99.94 99.97 100.00 100.00 99.87 100.00 99.83 99.94 99.85 99.98 99.95 99.90 99.90 99.86 99.78 99.87 99.86 99.25 98.21 100.00 99.90 99.15 100.00 99.85 99.62 99.88 K intron_retention bai chr3R + chr3R_20865679_20865743 chr3R_20865678_20865679;chr3R_20865743_20865744 chr3R_20865608_20865678;chr3R_20865744_20865870 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6045,I_chr3R_11373181_11373245 chr3R - chr3R_11373181_11373246 chr3R_11373180_11373181;chr3R_11373246_11373247 chr3R_11373081_11373180;chr3R_11373247_11373345 19.44 15.00 19.05 11.63 30.00 20.83 18.52 17.39 21.43 NA 40.00 25.00 28.57 21.43 24.14 19.51 13.64 10.53 19.44 11.11 20.00 21.43 20.00 NA NA 52.38 NA NA NA NA 23.53 NA 23.33 19.44 20.00 NA NA NA NA 13.04 NA 12.50 23.08 17.65 NA NA NA 18.75 16.36 NA 12.50 NA NA NA 18.75 NA NA 15.38 K jcn_only_AD MB8.chr3R.pasa.66,CG1105,I_chr3R_2892020_2892122,RI_chr3R_2892020_2892252 chr3R - chr3R_2892020_2892252;chr3R_2892020_2892645 chr3R_2892020_2892122 chr3R_2891920_2892019;chr3R_2892646_2892745 0.00 2.17 0.00 0.00 0.00 2.13 1.54 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 1.96 0.00 2.13 4.44 0.00 4.88 2.78 1.25 2.17 0.00 1.61 0.00 1.92 4.17 0.00 1.05 0.00 3.92 5.00 3.17 0.00 0.00 3.49 0.00 1.25 0.00 3.23 5.88 0.00 0.00 1.54 0.00 K intron_retention CE_chrX_19156179_19164138,CG8010,CG32536 chrX - chrX_19162632_19162709 chrX_19162631_19162632;chrX_19162709_19162710 chrX_19162538_19162631;chrX_19162710_19162926 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 4.35 0.00 1.23 0.00 0.00 1.23 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chrX_7993650_7995126,Gclc chrX - chrX_8009614_8009706 chrX_8009613_8009614;chrX_8009706_8009707 chrX_8009450_8009613;chrX_8009707_8009743 53.24 NA NA NA NA NA NA NA 52.63 NA NA 38.46 NA NA NA NA NA NA NA 54.55 NA NA NA NA NA NA NA NA 77.78 NA NA NA NA NA NA NA NA NA NA NA NA 53.85 NA NA NA NA NA NA 45.45 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG3107 chr2R + chr2R_978147_979376 chr2R_978248_979376 chr2R_979377_979733;chr2R_978101_978146 13.04 NA NA 18.18 NA 13.04 4.00 22.86 15.38 NA NA 12.82 NA NA NA 12.50 NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.00 NA NA NA NA NA NA 7.89 NA NA NA NA NA 8.70 NA NA NA K alternative_donor CG8709,I_chr2R_4027128_4027182,RI_chr2R_4029534_4029599,I_chr2R_4030580_4030636,I_chr2R_4030580_4030746,I_chr2R_4035901_4043493 chr2R - chr2R_4030580_4033256;chr2R_4030580_4033259 chr2R_4030580_4030636 chr2R_4030480_4030579;chr2R_4033260_4033265 6.12 4.55 4.88 3.53 7.41 4.76 6.98 7.50 7.41 5.88 6.06 7.87 8.00 7.89 8.57 8.47 4.65 10.00 4.62 7.59 6.45 12.50 4.11 5.08 3.92 6.38 6.45 7.69 10.53 4.65 7.50 4.76 5.71 6.41 6.06 5.13 6.25 3.57 6.12 6.12 4.76 6.32 7.32 6.52 5.56 6.25 6.67 8.82 7.25 3.45 5.80 6.06 3.70 5.26 7.41 3.45 5.56 5.71 K intron_retention CG42595,I_chr2RHet_3155517_3174709,RI_chr2RHet_3175044_3179353,RI_chr2RHet_3179300_3179586,I_chr2RHet_3179481_3179586 chr2RHet - chr2RHet_3179300_3179353 chr2RHet_3179299_3179300;chr2RHet_3179353_3179354 chr2RHet_3179200_3179299;chr2RHet_3179354_3179453 45.80 52.94 NA 31.43 NA 41.67 43.18 43.48 49.06 NA NA 47.37 30.00 57.14 NA 53.57 NA NA 38.89 47.83 NA NA 69.23 41.67 NA NA 81.82 NA NA 45.45 44.00 NA NA 34.48 NA NA NA NA NA 50.00 NA 50.00 37.50 41.18 NA NA NA 30.77 55.56 NA NA 46.15 NA NA 58.33 NA NA NA K intron_retention ETHR chr3R + chr3R_17085356_17085428 chr3R_17085355_17085356;chr3R_17085428_17085429 chr3R_17085193_17085355;chr3R_17085429_17085591 17.65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA 17.65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA K intron_retention l(1)G0148 chrX + chrX_6549806_6551639 chrX_6549805_6549806;chrX_6551639_6551640 chrX_6549586_6549805;chrX_6551640_6553756 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 K jcn_only_AA Pect,I_chr2L_13207997_13208109,E_chr2L_13208285_13210076 chr2L + chr2L_13208778_13209435;chr2L_13208778_13209501;chr2L_13208778_13209471 chr2L_13208778_13209492 chr2L_13208665_13208777;chr2L_13209502_13209599 5.50 4.44 4.99 2.40 7.50 5.40 1.74 3.70 4.65 3.70 2.46 6.21 38.89 7.74 5.50 4.43 6.56 5.50 4.12 7.17 3.76 13.75 6.44 7.60 6.37 3.09 5.04 12.75 4.22 9.09 4.57 6.29 8.66 3.99 9.76 2.46 7.12 5.76 4.72 3.93 6.22 5.55 4.71 5.82 4.95 8.06 4.95 7.94 2.93 6.33 6.78 5.68 1.45 7.92 7.54 7.07 3.38 3.50 K intron_retention CG12030 chr3L + chr3L_649052_649125 chr3L_649051_649052;chr3L_649125_649126 chr3L_648517_649051;chr3L_649126_649419 100.00 100.00 96.00 100.00 100.00 95.83 97.62 97.44 100.00 90.91 100.00 100.00 100.00 100.00 94.12 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG30001 chr2R - chr2R_5709396_5709451 chr2R_5709395_5709396;chr2R_5709451_5709452 chr2R_5709251_5709395;chr2R_5709452_5709603 14.29 NA NA 4.00 NA NA 27.27 NA 6.25 NA NA 11.76 NA 6.67 NA 35.71 NA NA NA 17.24 NA NA NA 14.29 NA NA NA NA NA NA 14.29 NA NA 22.22 NA NA 6.67 NA 33.33 NA NA 13.33 NA NA NA 18.75 36.36 NA 23.53 26.32 13.33 NA NA NA NA NA 0.00 10.53 K intron_retention CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4990630_4990691 chr2L_4990629_4990630;chr2L_4990691_4990692 chr2L_4990506_4990629;chr2L_4990692_4990839 1.81 1.24 1.33 2.93 0.00 0.95 3.05 1.65 2.25 5.56 0.00 2.14 0.00 1.56 2.16 2.40 1.57 1.59 0.75 2.35 0.00 3.93 1.96 2.20 6.32 5.92 4.04 8.74 9.27 2.53 1.32 2.68 2.55 2.02 2.33 3.81 1.61 0.65 1.30 1.81 11.83 0.78 0.00 1.33 2.36 1.22 0.00 3.81 1.20 0.00 1.66 3.10 1.37 1.23 0.00 2.92 0.00 3.57 K intron_retention srp,I_chr3R_11825782_11827473,I_chr3R_11826508_11826910 chr3R + chr3R_11825782_11826910 chr3R_11825781_11825782;chr3R_11826910_11826911 chr3R_11825682_11825781;chr3R_11826911_11827010 3.85 4.11 3.61 11.54 0.00 3.95 3.77 7.84 6.25 3.85 4.92 4.72 6.00 3.45 4.49 11.43 4.65 0.00 7.55 1.74 1.28 2.92 7.20 4.46 5.26 0.00 3.57 7.41 6.25 4.03 6.15 1.37 3.39 3.77 2.70 6.93 4.10 2.82 2.26 5.22 6.45 2.45 5.00 4.55 0.91 2.11 0.00 3.85 3.08 2.17 2.30 7.27 0.00 3.39 5.41 0.00 0.00 2.12 K alternative_acceptor Hel25E chr2L - chr2L_5541970_5542182 chr2L_5541977_5542182 chr2L_5542183_5542310;chr2L_5541723_5541969 98.00 98.51 98.11 98.71 100.00 98.15 98.00 97.08 97.74 100.00 100.00 99.28 98.28 98.65 98.59 98.82 95.38 98.18 97.18 97.22 95.83 98.63 98.59 95.45 95.24 98.25 98.21 97.14 100.00 100.00 98.61 96.00 100.00 95.80 98.00 97.87 96.97 96.43 100.00 100.00 100.00 99.05 94.83 95.65 96.43 96.92 97.30 100.00 97.69 97.22 97.47 97.87 100.00 98.00 96.88 96.36 98.15 97.92 K intron_retention I_chr2R_10048593_10048655,Tango7 chr2R - chr2R_10051876_10051991 chr2R_10051875_10051876;chr2R_10051991_10051992 chr2R_10051696_10051875;chr2R_10051992_10052150 0.00 0.00 0.34 0.62 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 1.35 0.00 0.48 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.62 0.33 0.52 0.00 0.42 0.00 0.00 0.00 0.33 0.50 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention mRpL28,CG3792,CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4974158_4974276 chr2L_4974157_4974158;chr2L_4974276_4974277 chr2L_4974010_4974157;chr2L_4974277_4975100 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 1.92 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 1.67 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 1.36 3.08 0.00 0.00 0.00 2.11 0.00 2.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG42270,I_chrX_17615384_17615455,I_chrX_17639729_17640603 chrX + chrX_17644520_17644586 chrX_17644519_17644520;chrX_17644586_17644587 chrX_17641001_17644519;chrX_17644587_17644881 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 2.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Eb1,RI_chr2R_2640290_2642206,I_chr2R_2640494_2642206,I_chr2R_2642491_2642549 chr2R + chr2R_2640290_2640353 chr2R_2640290_2640347 chr2R_2640190_2640289;chr2R_2640354_2640493 99.39 98.35 99.37 99.57 100.00 99.21 99.46 99.16 99.64 98.48 100.00 99.20 100.00 100.00 100.00 99.22 99.07 99.31 100.00 99.05 99.19 99.23 99.21 100.00 100.00 99.34 100.00 98.55 98.73 100.00 99.56 100.00 99.17 100.00 100.00 99.14 99.42 99.24 99.44 99.39 100.00 99.66 100.00 99.44 100.00 99.32 99.38 98.80 99.34 99.22 100.00 99.15 98.92 99.21 99.46 100.00 99.47 98.89 K alternative_acceptor RI_chrX_1796525_1796585,mip130,I_chrX_1820956_1821011,CG11596 chrX + chrX_1822614_1823084 chrX_1822614_1823033 chrX_1822367_1822613;chrX_1823085_1823203 91.49 87.88 100.00 96.97 96.77 88.24 96.77 98.00 97.14 94.44 96.43 93.10 100.00 96.77 97.44 95.12 100.00 88.89 96.55 97.33 86.67 86.21 87.04 87.50 95.65 100.00 97.06 91.30 88.89 88.89 91.49 86.36 88.46 96.00 100.00 87.50 86.05 87.88 92.11 82.69 81.82 93.33 96.88 89.47 90.91 85.71 91.43 84.85 92.45 89.47 84.00 96.55 72.73 94.29 97.83 88.24 90.48 75.00 K jcn_only_AA tra2,I_chr2R_10491279_10491488,REFI_chr2R_10491644_10491701 chr2R - chr2R_10491007_10491488 chr2R_10491431_10491488 chr2R_10491489_10491563;chr2R_10490853_10491006 10.19 9.09 22.22 4.29 3.85 7.14 21.05 19.35 15.00 2.17 22.22 19.59 NA 20.00 16.13 24.44 4.35 7.69 16.13 8.91 21.21 12.70 7.59 18.97 10.00 9.09 6.00 7.14 6.25 9.46 12.50 16.67 5.70 NA 8.47 5.56 5.75 1.69 5.68 9.63 12.77 14.56 13.64 10.64 11.00 14.02 14.08 10.19 9.80 10.29 13.85 22.50 6.90 4.05 28.12 7.58 10.77 6.85 K intron_retention cmet chr2L - chr2L_11262181_11262243 chr2L_11262180_11262181;chr2L_11262243_11262244 chr2L_11262063_11262180;chr2L_11262244_11262420 0.00 0.00 0.00 5.77 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention noncoding_20850,CG11093,RF_chr4_983355_984342 chr4 - chr4_983355_983859 chr4_983354_983355;chr4_983859_983860 chr4_983255_983354;chr4_983860_983907 29.81 30.00 31.82 39.66 33.33 26.32 33.33 35.29 23.88 NA 77.78 45.45 27.59 48.15 24.14 36.76 46.67 20.00 26.32 28.12 NA 16.67 18.18 15.79 NA 31.25 14.29 NA NA 40.00 30.00 15.00 15.79 29.63 25.00 NA NA 25.00 NA 48.00 36.84 42.55 28.57 26.67 26.32 32.00 25.00 33.33 34.29 37.50 14.29 33.33 22.73 NA 31.25 36.36 15.56 29.41 K jcn_only_AD katanin-60 chr3R - chr3R_1056937_1057778 chr3R_1056937_1057627 chr3R_1056715_1056936;chr3R_1057779_1057940 0.00 0.00 0.00 2.70 4.55 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 7.14 2.70 0.00 NA 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 3.57 K intron_retention sli,RI_chr2R_11794739_11809143 chr2R - chr2R_11761183_11761827 chr2R_11761182_11761183;chr2R_11761827_11761828 chr2R_11761040_11761182;chr2R_11761828_11761954 3.08 2.78 3.51 2.74 2.17 0.00 0.00 4.84 3.08 3.42 0.00 3.08 6.38 5.71 0.00 0.00 6.06 2.04 0.00 3.36 5.26 6.67 0.88 3.49 3.12 5.71 0.00 6.12 2.82 5.00 5.56 0.00 3.19 2.56 0.00 3.85 2.99 3.70 3.68 3.39 0.00 3.31 0.00 3.49 2.44 5.56 2.70 5.26 1.19 9.62 0.00 6.00 1.80 0.00 4.44 0.00 0.00 2.60 K intron_retention Ank,RI_chr4_142397_142478,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_142426_142478 chr4_142425_142426;chr4_142478_142479 chr4_142310_142425;chr4_142479_142578 0.00 1.18 0.00 0.00 0.00 0.00 2.47 1.49 0.00 0.00 0.00 0.00 0.00 2.27 0.00 1.37 2.04 1.37 1.09 2.16 0.00 0.00 0.00 0.00 0.00 0.00 2.47 NA 0.00 0.00 2.11 NA 0.00 0.74 0.00 0.00 1.64 0.00 0.00 1.45 NA 2.61 2.99 0.00 NA 0.00 0.00 0.00 0.62 0.00 1.54 2.17 0.00 NA 0.96 0.00 0.00 0.00 K intron_retention CG2909 chrX + chrX_10222106_10222444 chrX_10222105_10222106;chrX_10222444_10222445 chrX_10221099_10222105;chrX_10222445_10223021 0.00 0.00 0.00 4.17 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention dco,RI_chr3R_26883651_26886096,I_chr3R_26884350_26886671,I_chr3R_26884350_26886791,RI_chr3R_26884365_26886096,I_chr3R_26884365_26886798 chr3R - chr3R_26886187_26886798 chr3R_26886186_26886187;chr3R_26886798_26886799 chr3R_26886097_26886186;chr3R_26886799_26886891 9.68 9.86 10.53 14.29 12.73 7.50 11.40 14.29 8.04 4.44 2.82 13.46 12.33 11.59 10.45 11.11 9.68 8.22 10.00 6.53 8.57 8.42 6.67 11.59 8.89 10.94 14.06 12.00 15.38 5.51 6.90 9.52 8.15 11.76 12.07 9.46 6.60 10.00 15.09 9.76 13.56 11.54 12.73 8.85 9.21 7.08 5.49 7.24 13.56 9.43 13.51 10.53 8.33 5.26 6.74 4.60 7.78 3.21 K alternative_acceptor CG11163,I_chr2R_1666219_1669711 chr2R - chr2R_1666133_1670219 chr2R_1666219_1670219 chr2R_1670220_1670281;chr2R_1666119_1666132 100.00 95.00 100.00 100.00 92.86 100.00 97.50 100.00 97.92 100.00 100.00 97.62 100.00 96.15 95.24 97.92 100.00 100.00 100.00 97.78 100.00 100.00 94.74 100.00 100.00 92.86 100.00 NA 100.00 95.00 100.00 100.00 100.00 92.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.35 100.00 100.00 100.00 97.62 93.33 97.87 96.61 100.00 95.83 100.00 100.00 100.00 100.00 100.00 94.44 98.04 K intron_retention CG4957,CG31873 chr2L + chr2L_10269320_10269375 chr2L_10269319_10269320;chr2L_10269375_10269376 chr2L_10268881_10269319;chr2L_10269376_10269550 0.00 NA NA 0.00 NA NA 4.55 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K alternative_donor CG4699 chr3R + chr3R_11624200_11624445;chr3R_11624190_11624445;chr3R_11624127_11624445 chr3R_11624133_11624445 chr3R_11624446_11624758;chr3R_11623809_11624126 9.09 2.50 5.00 17.19 24.39 18.18 3.64 12.07 16.25 3.85 11.11 9.86 2.78 10.81 13.21 13.16 10.81 10.71 8.89 8.05 5.88 9.09 1.79 9.68 8.33 17.07 5.45 1.79 9.09 10.59 13.64 15.52 20.77 14.75 6.78 7.02 8.70 10.64 5.97 1.59 2.86 8.33 7.50 9.43 4.26 9.09 2.70 19.87 12.77 10.00 4.08 6.25 2.33 15.62 9.62 5.41 11.76 26.45 K intron_retention CG1316 chr3L + chr3L_4286002_4286171 chr3L_4286001_4286002;chr3L_4286171_4286172 chr3L_4285847_4286001;chr3L_4286172_4286865 93.75 100.00 100.00 NA NA NA NA 100.00 100.00 NA NA 92.31 NA NA 100.00 100.00 NA 100.00 NA 88.24 NA NA 90.00 NA NA NA NA NA 62.96 100.00 100.00 90.00 90.00 93.75 NA NA NA NA 88.89 92.86 NA 90.91 100.00 NA 90.91 93.33 100.00 100.00 91.67 NA 87.50 NA NA NA 90.91 NA 100.00 94.44 K cassette klar,I_chr3L_462559_472609,RI_chr3L_517594_539898 chr3L - chr3L_451772_454108 chr3L_451772_452837;chr3L_453489_454108 chr3L_452838_453488 chr3L_451127_451771;chr3L_454109_454405 97.40 96.41 99.01 90.62 98.41 98.45 98.25 96.22 98.41 98.15 96.72 94.54 96.20 98.28 98.75 99.09 99.60 96.89 96.62 96.36 97.40 83.33 97.57 96.45 96.76 97.82 96.00 97.21 96.62 97.48 96.60 97.90 98.14 97.60 95.54 93.35 97.06 97.66 96.57 99.01 99.23 97.26 97.78 96.86 98.56 97.63 99.02 97.84 98.68 97.02 96.34 99.55 97.40 97.16 98.60 96.46 97.19 98.81 K jcn_only_AA CG5745,I_chr3R_16928870_16929143 chr3R + chr3R_16928641_16929149 chr3R_16928641_16929143 chr3R_16928445_16928640;chr3R_16929150_16929243 100.00 100.00 100.00 100.00 100.00 100.00 97.96 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 96.15 100.00 100.00 100.00 100.00 100.00 97.67 100.00 100.00 97.78 NA 100.00 100.00 100.00 100.00 93.55 100.00 97.06 100.00 100.00 100.00 98.28 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K cassette Ctr1A,I_chrX_6558480_6559032 chrX + chrX_6559720_6560882 chrX_6559720_6560272;chrX_6560303_6560882 chrX_6560273_6560302 chrX_6559472_6559719;chrX_6560883_6561458 5.00 3.12 1.79 12.24 3.85 5.77 6.35 1.19 8.33 4.76 4.08 8.43 9.38 6.82 5.88 3.64 4.65 4.88 5.41 6.11 2.27 7.89 4.41 7.23 12.82 8.00 5.88 28.21 5.88 6.12 3.92 8.33 4.05 4.71 2.27 8.33 4.58 5.63 3.91 6.00 5.88 2.22 3.45 9.52 3.23 9.38 2.13 8.00 4.11 3.49 4.35 6.67 1.59 5.00 5.56 4.62 1.98 4.46 K jcn_only_AA CG5510 chr3R - chr3R_19994963_19995036 chr3R_19994969_19995036 chr3R_19995037_19995105;chr3R_19994900_19994962 100.00 100.00 99.60 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.76 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.29 100.00 100.00 100.00 100.00 99.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.51 100.00 99.47 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.43 100.00 K intron_retention CG6928 chr3L + chr3L_12000501_12000715 chr3L_12000500_12000501;chr3L_12000715_12000716 chr3L_12000321_12000500;chr3L_12000716_12001156 6.12 0.00 5.56 0.00 NA NA 0.00 13.04 7.14 NA NA 7.69 NA 15.38 NA 11.76 NA NA 0.00 4.76 NA NA 0.00 20.00 NA 0.00 0.00 15.38 NA NA NA NA NA NA NA NA NA 13.33 NA 0.00 NA 5.56 NA 9.52 NA 11.11 NA NA 0.00 13.33 15.00 NA NA 6.67 NA NA 4.76 NA K alternative_acceptor Keap1 chr3R - chr3R_12902225_12902298 chr3R_12902247_12902298 chr3R_12902299_12902615;chr3R_12901967_12902224 23.77 33.33 16.67 16.67 NA 12.50 23.53 12.50 24.00 15.91 NA 23.33 NA 25.00 13.04 17.65 23.08 20.00 NA 18.92 27.27 21.92 27.50 21.43 29.17 13.33 21.43 21.05 28.57 26.67 31.58 30.43 33.33 13.64 24.00 32.14 30.00 31.82 31.71 24.14 26.67 18.52 7.69 29.63 17.95 25.00 16.67 22.73 26.09 19.05 29.41 28.57 25.00 NA 16.67 30.77 20.00 24.32 K intron_retention CG18659,E_chr2R_5011363_5019110,I_chr2R_5016147_5016997 chr2R - chr2R_5015816_5015875 chr2R_5015815_5015816;chr2R_5015875_5015876 chr2R_5015762_5015815;chr2R_5015876_5016146 33.33 32.08 45.45 17.86 28.26 30.43 35.59 39.29 26.47 50.00 35.90 27.85 38.89 21.62 40.00 32.61 34.00 31.71 37.50 35.11 39.02 38.03 28.75 27.40 52.27 56.41 44.74 34.00 53.12 32.61 38.30 33.33 23.33 31.67 40.00 34.69 20.88 26.09 24.44 32.32 63.33 32.89 28.57 30.65 33.33 38.30 38.64 52.00 36.99 19.64 28.41 33.33 29.63 28.57 36.96 26.67 20.00 51.72 K jcn_only_AD eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20341925_20342041;chr3L_20341636_20342041;chr3L_20341509_20342041;chr3L_20341486_20342041;chr3L_20341522_20342041;chr3L_20341751_20342041;chr3L_20341530_20342041;chr3L_20341629_20342041;chr3L_20341598_20342041;chr3L_20341759_20342041 chr3L_20341865_20342041 chr3L_20342042_20342306;chr3L_20341482_20341485 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.79 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 NA 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention Ca-P60A,RI_chr2R_19820338_19820541,I_chr2R_19820338_19821424,CEI_chr2R_19820338_19821830,I_chr2R_19820338_19823289 chr2R - chr2R_19820338_19820817 chr2R_19820337_19820338;chr2R_19820817_19820818 chr2R_19820238_19820337;chr2R_19820818_19820969 98.72 100.00 98.72 97.25 96.88 100.00 100.00 99.17 99.36 97.62 100.00 99.20 98.61 100.00 100.00 100.00 97.67 97.78 100.00 97.33 100.00 96.55 99.04 98.78 98.04 100.00 99.00 95.74 98.36 100.00 100.00 97.06 99.15 100.00 100.00 98.04 97.30 97.67 98.81 97.65 97.78 99.24 98.04 100.00 97.22 98.08 97.67 98.72 99.09 97.78 100.00 100.00 96.88 94.74 97.47 96.88 97.73 98.39 K intron_retention Cp110,I_chrX_21890195_21895316,I_chrX_21900456_21904601 chrX + chrX_21886363_21887237 chrX_21886362_21886363;chrX_21887237_21887238 chrX_21884923_21886362;chrX_21887238_21887471 23.08 NA 25.00 NA NA 6.67 NA NA 20.00 NA NA 30.00 NA 16.67 NA 23.53 NA 15.38 16.67 19.05 NA 50.00 NA 23.08 NA NA 30.77 NA NA NA 38.46 41.67 16.67 NA 21.43 30.77 NA 25.00 35.71 33.33 26.67 30.00 30.77 NA 18.75 12.50 NA 12.50 7.41 10.00 33.33 NA NA NA 20.00 14.29 30.77 16.67 K alternative_acceptor lt,I_chr2L_22817840_22817968,RI_chr2L_22820498_22823377,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22817840_22817968;chr2L_22817840_22817891 chr2L_22817840_22817943 chr2L_22817740_22817839;chr2L_22817969_22817982 2.56 4.26 1.85 2.27 5.71 7.32 3.30 3.88 2.34 5.00 2.78 2.06 1.75 1.67 1.96 1.12 7.55 2.50 5.08 5.69 3.70 3.77 1.79 2.33 2.33 2.33 2.00 4.17 3.85 5.26 4.17 0.00 0.00 0.94 2.56 6.25 6.52 2.63 2.33 1.59 0.00 4.63 2.00 0.00 5.56 2.70 2.94 2.38 0.92 2.86 0.00 2.50 3.70 5.26 1.49 2.78 6.25 0.00 K alternative_acceptor Ark,I_chr2R_12909344_12909416,RI_chr2R_12912984_12913058 chr2R + chr2R_12912984_12913058 chr2R_12912984_12913038 chr2R_12912884_12912983;chr2R_12913059_12913158 100.00 95.83 94.74 100.00 100.00 100.00 97.96 97.73 97.62 100.00 100.00 97.78 100.00 100.00 100.00 100.00 95.24 100.00 100.00 97.37 100.00 97.44 96.88 100.00 92.31 100.00 100.00 92.31 100.00 92.86 95.12 100.00 100.00 97.78 100.00 93.75 100.00 92.31 100.00 100.00 100.00 96.30 100.00 96.00 100.00 100.00 96.00 100.00 97.50 96.30 95.65 94.44 100.00 93.33 97.06 93.33 100.00 95.45 K intron_retention Liprin-alpha chr2L + chr2L_6727323_6727862 chr2L_6727322_6727323;chr2L_6727862_6727863 chr2L_6727194_6727322;chr2L_6727863_6728780 16.67 18.75 16.67 22.22 15.38 12.00 5.71 21.88 19.30 15.79 20.00 22.41 20.00 15.15 18.92 11.90 13.64 30.43 23.08 14.55 8.70 12.82 19.57 25.00 23.81 14.29 25.93 8.33 11.76 15.15 14.71 25.00 16.67 18.18 25.00 20.00 25.93 25.93 21.43 20.34 4.55 15.69 12.50 10.71 15.00 12.50 26.92 5.88 24.59 15.79 20.51 29.17 13.33 NA 10.00 22.22 11.11 11.54 N jcn_only_AD CG8229,CG33199 chr2R - chr2R_4836447_4838210;chr2R_4836447_4837350 chr2R_4836447_4836515 chr2R_4835619_4836446;chr2R_4838211_4838296 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.94 K alternative_acceptor CG6439,RI_chr3R_17844601_17844713 chr3R - chr3R_17844550_17844713 chr3R_17844601_17844713 chr3R_17844714_17844813;chr3R_17844502_17844549 0.00 0.00 0.00 1.92 0.00 2.13 3.39 1.89 0.93 0.00 0.00 1.09 0.00 0.00 0.00 0.00 2.86 0.00 0.00 1.42 0.00 4.76 0.00 1.59 0.00 0.00 0.00 0.00 1.67 1.85 2.13 0.00 0.00 1.37 0.00 0.00 0.00 1.72 0.00 0.00 1.54 0.00 0.00 0.00 1.06 0.00 0.00 1.57 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor I_chr2R_17169674_17170491,CG10069,I_chr2R_17169897_17170495,I_chr2R_17170432_17170491,I_chr2R_17171765_17171886 chr2R + chr2R_17170432_17170491;chr2R_17170336_17170491;chr2R_17169885_17170491;chr2R_17170070_17170491 chr2R_17169897_17170491 chr2R_17170492_17170591;chr2R_17169869_17169884 80.77 75.00 81.82 78.57 86.36 81.25 54.05 61.36 76.47 90.00 80.00 84.62 74.07 76.92 76.67 73.81 76.92 73.91 80.95 81.25 78.26 77.36 80.56 85.71 83.33 75.00 78.79 80.00 84.62 82.76 77.78 83.33 82.50 74.07 79.17 72.73 86.67 87.10 84.44 83.10 75.86 82.14 69.57 80.77 79.17 82.76 86.96 85.00 76.36 76.19 83.33 89.66 81.82 90.91 73.53 83.33 82.61 82.05 K jcn_only_AD CG12162,I_chr3R_1293876_1293924,I_chr3R_1294319_1294410 chr3R + chr3R_1294319_1294410 chr3R_1294352_1294410 chr3R_1294411_1294510;chr3R_1294219_1294318 100.00 98.44 100.00 100.00 100.00 100.00 100.00 98.48 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 97.89 100.00 100.00 98.41 98.61 100.00 100.00 100.00 100.00 100.00 100.00 97.73 98.63 100.00 100.00 100.00 94.87 100.00 98.21 98.95 98.48 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.01 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 97.06 K intron_retention san,RI_chr2R_7248338_7248430 chr2R + chr2R_7248338_7248463 chr2R_7248337_7248338;chr2R_7248463_7248464 chr2R_7248238_7248337;chr2R_7248464_7248530 0.00 0.00 0.00 0.00 1.82 0.00 3.23 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 1.89 6.60 10.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.36 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Lk6 chr3R - chr3R_7581969_7582034 chr3R_7581968_7581969;chr3R_7582034_7582035 chr3R_7581457_7581968;chr3R_7582035_7582214 0.74 0.40 0.32 0.56 1.15 0.82 0.66 0.61 0.81 0.69 0.39 0.63 0.62 0.56 0.63 0.73 0.56 1.18 0.61 0.71 0.66 6.04 1.15 1.54 1.17 0.63 1.09 1.87 8.76 0.50 1.82 1.26 1.34 0.91 1.83 0.76 1.19 1.17 0.91 1.33 1.77 0.70 0.66 1.37 0.00 1.57 0.74 1.39 0.46 1.64 1.17 1.84 0.00 0.40 0.44 0.60 0.45 0.42 K intron_retention akirin,I_chr3L_7363173_7364806,I_chr3L_7363177_7364806,I_chr3L_7363177_7364831,I_chr3L_7363211_7364831,I_chr3L_7363731_7364806,I_chr3L_7364126_7364806,RI_chr3L_7364737_7364806 chr3L + chr3L_7363169_7364831 chr3L_7363168_7363169;chr3L_7364831_7364832 chr3L_7363111_7363168;chr3L_7364832_7364906 88.98 89.09 95.00 97.19 90.00 94.12 95.14 93.10 90.15 83.93 95.45 90.66 88.24 84.62 92.24 84.08 91.35 90.00 90.00 92.31 91.43 82.14 84.27 87.39 89.55 94.44 90.55 84.78 93.75 74.23 85.34 77.50 48.81 92.15 88.31 93.33 87.18 87.06 85.71 82.35 91.53 90.65 92.39 93.29 91.23 86.00 88.89 85.00 86.57 75.00 88.98 88.24 86.30 88.37 92.91 86.36 85.86 83.56 K intron_retention CG34394,I_chr2L_3365674_3365965 chr2L - chr2L_3363196_3363306 chr2L_3363195_3363196;chr2L_3363306_3363307 chr2L_3362999_3363195;chr2L_3363307_3363437 0.00 11.76 8.33 13.33 4.35 0.00 0.00 5.88 6.67 3.45 0.00 0.00 0.00 8.33 5.56 1.41 NA 9.38 0.00 6.94 0.00 5.22 0.00 0.00 0.00 6.67 0.00 0.00 12.50 0.00 0.00 0.00 6.45 2.38 0.00 6.25 0.00 0.00 4.17 11.36 0.00 11.63 0.00 3.45 0.00 0.00 0.00 2.56 7.58 0.00 0.00 0.00 NA 0.00 2.63 0.00 0.00 0.00 K intron_retention CG4199,I_chrX_1962457_1964222 chrX - chrX_1965614_1965671 chrX_1965613_1965614;chrX_1965671_1965672 chrX_1965393_1965613;chrX_1965672_1965832 48.00 NA NA 75.00 NA NA 50.00 52.63 40.00 NA NA 68.75 NA NA 55.56 NA NA 50.00 38.46 48.00 NA 73.24 53.33 35.71 NA 58.33 58.82 40.00 41.18 NA 53.85 42.86 41.38 52.17 53.85 82.35 NA NA NA 44.44 48.00 26.92 NA NA 46.67 33.33 NA 46.15 40.91 NA 60.00 60.00 NA NA NA NA 47.06 43.48 K intron_retention Cdc27,MED4 chr3L - chr3L_7241535_7241603 chr3L_7241534_7241535;chr3L_7241603_7241604 chr3L_7238644_7241534;chr3L_7241604_7241679 0.00 0.00 0.00 0.00 0.00 0.00 9.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 7.69 13.64 6.82 16.67 15.38 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 2.04 0.00 0.00 12.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10732,I_chr3L_13438999_13439071 chr3L + chr3L_13438740_13438838 chr3L_13438739_13438740;chr3L_13438838_13438839 chr3L_13437468_13438739;chr3L_13438839_13438998 92.98 93.33 87.50 97.14 89.47 95.00 93.33 86.67 97.87 88.00 93.75 92.31 85.71 94.74 94.74 87.50 93.33 94.74 94.44 94.00 88.89 97.87 96.08 97.50 97.44 100.00 94.87 84.21 92.59 90.24 86.36 100.00 90.00 88.57 96.55 97.56 91.38 90.70 93.44 92.98 96.97 90.70 94.74 86.05 83.72 94.87 92.00 94.44 89.19 97.62 91.67 84.00 86.21 92.31 85.71 84.62 87.50 92.98 K jcn_only_AD sxc,I_chr2R_1203985_1205289,I_chr2R_1208121_1213310,I_chr2R_1213177_1213308 chr2R + chr2R_1194785_1194918 chr2R_1194858_1194918 chr2R_1194919_1195157;chr2R_1194775_1194784 86.11 NA NA 95.83 NA NA 93.22 91.30 77.78 NA NA NA 86.11 NA NA 69.23 NA NA 81.82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 73.91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 86.67 NA NA NA NA NA NA NA NA NA N multi_cassette CG1161,RI_chr3R_1181273_1181459,I_chr3R_1182079_1182146 chr3R + chr3R_1181273_1182146 chr3R_1181273_1181515;chr3R_1181665_1181724;chr3R_1181851_1181899;chr3R_1181959_1182146 chr3R_1181516_1181664;chr3R_1181725_1181850;chr3R_1181900_1181958 chr3R_1181173_1181272;chr3R_1182147_1182246 100.00 100.00 100.00 100.00 100.00 100.00 86.44 100.00 91.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.20 100.00 89.86 84.75 86.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 67.11 100.00 100.00 100.00 100.00 100.00 100.00 89.47 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG14614,REI_chrX_21856047_21856229,RI_chrX_21856896_21857109 chrX - chrX_21856896_21857109;chrX_21857041_21857109 chrX_21856924_21857109 chrX_21857110_21857209;chrX_21856796_21856895 20.94 18.18 30.77 16.33 16.67 16.13 29.41 19.64 17.05 6.67 17.95 8.45 25.71 18.42 30.43 12.50 24.24 28.95 17.14 14.71 27.03 31.03 25.49 10.26 16.67 21.95 NA 22.22 20.83 29.41 28.89 20.00 10.53 8.00 13.64 32.14 25.53 36.11 26.67 12.90 NA 15.28 23.33 33.33 27.78 30.43 13.79 20.00 17.24 22.73 30.00 30.77 14.29 23.53 17.07 26.09 21.05 NA K jcn_only_AA CG13384 chr2L + chr2L_8384896_8385002 chr2L_8384896_8384996 chr2L_8384754_8384895;chr2L_8385003_8385091 97.71 98.97 97.27 98.25 97.99 95.56 97.12 98.60 98.62 97.75 98.03 97.31 95.71 97.12 98.31 98.45 97.43 97.51 98.12 97.38 97.92 97.61 97.58 99.12 98.11 98.30 95.96 93.12 98.75 97.40 96.96 96.62 99.54 96.76 95.78 97.88 98.03 95.85 97.71 98.25 96.35 96.93 98.72 97.20 96.88 97.73 97.31 96.04 98.30 98.90 97.78 95.60 99.15 98.14 96.88 98.18 94.86 98.10 K intron_retention CG9945,CG16742 chr2R + chr2R_16507741_16507942 chr2R_16507740_16507741;chr2R_16507942_16507943 chr2R_16507585_16507740;chr2R_16507943_16508049 0.00 0.00 NA 3.03 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 2.70 NA NA NA 0.00 NA 4.00 0.00 0.00 0.00 NA 0.00 9.09 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 NA 2.94 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.06 NA 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention Rpn5 chr3R + chr3R_1615349_1615402 chr3R_1615348_1615349;chr3R_1615402_1615403 chr3R_1615211_1615348;chr3R_1615403_1615415 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 62.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention svr,RI_chrX_421417_421591 chrX + chrX_396473_396517 chrX_396472_396473;chrX_396517_396518 chrX_396320_396472;chrX_396518_396799 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Pdk chr2R + chr2R_5319684_5319739 chr2R_5319683_5319684;chr2R_5319739_5319740 chr2R_5319476_5319683;chr2R_5319740_5319930 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 19.05 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor RpS3A,I_chr4_87364_87465,I_chr4_87533_87717,I_chr4_87549_87717,I_chr4_87549_87769 chr4 - chr4_87533_87673;chr4_87533_87717;chr4_87533_87757 chr4_87533_87769 chr4_87466_87532;chr4_87770_87817 0.05 0.05 0.03 0.06 0.14 0.03 0.05 0.07 0.07 0.00 0.04 0.03 0.03 0.00 0.03 0.08 NA 0.04 0.05 0.07 0.03 0.05 0.07 0.06 0.06 0.03 0.00 0.06 0.00 0.18 0.03 0.16 0.04 0.05 0.07 NA NA 0.12 0.05 0.04 0.00 0.01 0.04 NA 0.14 0.09 0.09 0.09 0.01 0.13 0.00 NA 0.05 0.00 0.07 0.00 0.08 0.16 K intron_retention CG30345,I_chr2R_5037343_5037395 chr2R + chr2R_5038077_5038139 chr2R_5038076_5038077;chr2R_5038139_5038140 chr2R_5037941_5038076;chr2R_5038140_5038466 0.00 NA NA 5.56 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA K jcn_only_AA I_chr2L_114992_156735,RI_chr2L_114992_155545,RI_chr2L_114992_155566,I_chr2L_114992_155637,I_chr2L_114992_156175,RI_chr2L_155430_155637,CG11455,CG3436 chr2L + chr2L_155430_155566;chr2L_155430_155637 chr2L_155430_155493 chr2L_155424_155429;chr2L_155638_155645 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.74 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 1.69 0.00 0.78 0.00 NA 1.92 1.85 0.00 2.63 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 K intron_retention CG9948 chr3L + chr3L_6949263_6949332 chr3L_6949262_6949263;chr3L_6949332_6949333 chr3L_6949194_6949262;chr3L_6949333_6949497 93.33 91.67 90.00 96.55 90.00 94.44 90.00 95.12 91.43 100.00 93.33 96.88 94.12 100.00 95.24 96.77 93.33 93.33 88.46 88.89 92.31 94.44 100.00 87.50 91.67 94.44 100.00 NA 100.00 100.00 94.74 100.00 100.00 86.67 93.75 92.31 NA 90.00 100.00 95.65 90.00 88.24 92.86 87.50 90.91 95.45 94.44 86.67 97.56 95.24 85.71 88.89 89.47 92.31 94.74 95.00 92.59 86.21 K alternative_acceptor drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389400_9390195;chr2R_9389714_9390195;chr2R_9389430_9390195 chr2R_9389597_9390195 chr2R_9390196_9390251;chr2R_9389318_9389399 83.78 81.69 86.32 81.18 84.38 84.42 81.71 84.80 85.78 86.27 84.06 82.76 86.87 81.19 83.49 82.76 82.72 83.95 86.23 84.78 82.05 79.55 83.84 76.32 81.82 87.96 80.81 78.46 87.25 82.02 85.25 85.00 75.78 86.49 83.78 87.18 81.36 84.09 83.33 85.40 81.18 84.53 75.86 80.52 85.96 84.62 77.94 87.94 82.71 81.25 83.33 80.95 86.27 86.36 84.50 80.00 83.53 86.84 K intron_retention Srp14 chr3R + chr3R_16406044_16406111 chr3R_16406043_16406044;chr3R_16406111_16406112 chr3R_16405971_16406043;chr3R_16406112_16406212 1.11 0.00 2.11 6.67 0.00 3.49 12.09 1.39 3.23 0.00 7.55 2.53 7.27 0.00 2.41 1.06 0.00 0.00 2.78 1.11 3.08 0.00 0.00 0.00 6.02 19.74 3.49 1.98 6.56 0.00 3.54 0.00 0.00 0.91 0.92 5.49 0.00 0.00 1.61 0.70 5.30 2.17 0.00 2.99 0.86 1.36 0.00 0.51 2.72 0.98 0.00 0.00 0.49 0.00 0.00 2.10 2.19 1.17 K intron_retention AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9006273_9007675 chrX_9006272_9006273;chrX_9007675_9007676 chrX_9006196_9006272;chrX_9007676_9007775 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 2.34 0.00 0.00 2.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 2.25 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.98 1.79 0.00 0.00 0.00 0.00 2.63 1.79 0.00 0.00 K intron_retention Zyx102EF,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1078199_1078263 chr4_1078198_1078199;chr4_1078263_1078264 chr4_1078191_1078198;chr4_1078264_1078326 80.00 NA NA 92.59 NA 66.67 76.92 81.25 84.62 NA NA 77.78 NA NA NA 92.86 NA NA NA 69.23 NA NA 71.43 NA NA 88.89 90.91 NA NA NA 70.00 NA NA 82.35 NA NA NA NA NA 77.78 NA 64.71 NA NA NA 80.00 NA NA 82.35 NA NA NA 80.00 NA NA NA 70.00 100.00 K jcn_only_AD nrv2,I_chr2L_6791842_6794492,I_chr2L_6793397_6794492,I_chr2L_6793405_6793916,I_chr2L_6793405_6794499,I_chr2L_6793684_6794492 chr2L - chr2L_6793405_6794492;chr2L_6793405_6794316;chr2L_6793405_6794551 chr2L_6793405_6794328 chr2L_6793305_6793404;chr2L_6794552_6794592 0.00 5.00 0.00 3.12 0.00 0.00 0.00 0.00 3.19 0.00 4.76 0.00 0.00 0.00 2.63 2.20 0.00 0.00 4.76 1.83 0.00 2.27 0.00 0.00 3.45 0.00 2.27 NA 0.00 0.00 0.00 3.57 0.00 7.46 4.08 3.70 1.41 0.00 0.00 1.79 0.00 5.88 0.00 0.00 0.00 2.41 0.00 0.00 1.03 4.88 3.33 0.00 0.00 0.00 1.45 3.57 4.29 4.05 K intron_retention CG7546 chr3L + chr3L_7504338_7504431 chr3L_7504337_7504338;chr3L_7504431_7504432 chr3L_7504269_7504337;chr3L_7504432_7504542 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG1265,I_chr3L_4255296_4255550 chr3L + chr3L_4255296_4255353;chr3L_4255296_4255550;chr3L_4255296_4255457 chr3L_4255296_4255609 chr3L_4255196_4255295;chr3L_4255610_4255650 96.08 98.31 96.67 93.48 97.44 97.78 94.44 97.40 96.08 93.94 97.30 97.65 87.88 97.30 93.18 92.96 97.62 96.08 95.65 96.99 97.73 94.92 96.88 98.70 100.00 92.68 95.45 100.00 89.66 97.30 92.16 96.88 92.00 96.00 91.67 100.00 96.10 94.92 97.40 95.71 93.94 98.02 100.00 97.18 88.89 97.40 96.67 94.29 95.12 95.00 95.16 96.08 100.00 100.00 95.08 97.40 95.29 93.62 K alternative_donor CG10277,I_chr3R_2211939_2212057 chr3R + chr3R_2211921_2212057 chr3R_2211939_2212057 chr3R_2212058_2212157;chr3R_2211839_2211920 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.89 0.00 0.00 2.73 0.00 0.00 0.55 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 K intron_retention HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13176263_13179235 chrX_13176262_13176263;chrX_13179235_13179236 chrX_13176199_13176262;chrX_13179236_13179281 13.30 16.22 14.89 15.71 5.26 10.42 19.51 6.17 10.71 21.43 6.67 11.24 18.37 23.08 13.56 16.13 8.47 13.04 19.48 20.59 16.67 5.00 7.81 14.29 25.00 25.93 18.92 NA 22.58 12.77 17.72 4.35 8.47 16.96 19.35 21.62 6.67 6.45 0.00 5.26 17.95 11.24 21.67 2.70 15.38 15.25 0.00 20.88 15.13 3.85 12.77 11.76 8.33 10.53 10.14 0.00 0.00 19.35 K intron_retention CG5792,F_chr2L_12714547_12714695 chr2L - chr2L_12715530_12715893 chr2L_12715529_12715530;chr2L_12715893_12715894 chr2L_12715069_12715529;chr2L_12715894_12716011 0.00 0.00 NA 0.00 0.00 0.00 0.00 6.67 0.00 NA NA 8.33 NA 0.00 0.00 14.29 5.88 0.00 15.38 2.56 NA 0.00 0.00 4.55 NA 0.00 4.76 0.00 0.00 NA 0.00 NA 0.00 6.25 5.26 10.53 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 9.09 0.00 0.00 2.94 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 K intron_retention inaD,I_chr2R_18744912_18744978 chr2R - chr2R_18744917_18744978 chr2R_18744916_18744917;chr2R_18744978_18744979 chr2R_18744663_18744916;chr2R_18744979_18745069 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA 88.89 NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG1407,RI_chr2R_5918919_5919093,I_chr2R_5918925_5919213,RI_chr2R_5918952_5919084,RI_chr2R_5918952_5919093 chr2R - chr2R_5918925_5919084 chr2R_5918924_5918925;chr2R_5919084_5919085 chr2R_5918852_5918924;chr2R_5919085_5919090 62.50 61.54 50.00 58.33 53.33 56.25 54.55 61.90 66.67 NA 66.67 80.00 90.00 58.33 73.68 59.38 53.85 55.56 53.85 42.55 58.82 73.68 55.00 62.50 41.67 68.18 50.00 58.33 64.29 63.64 55.56 NA 66.67 55.56 64.29 90.00 66.67 63.64 50.00 85.19 72.73 64.29 60.00 87.50 80.00 64.29 64.29 70.00 54.05 72.73 52.63 64.29 50.00 75.00 54.17 75.00 57.89 83.33 K intron_retention drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389597_9389751 chr2R_9389596_9389597;chr2R_9389751_9389752 chr2R_9389497_9389596;chr2R_9389752_9389851 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.08 96.43 100.00 97.06 98.25 100.00 96.15 100.00 100.00 96.00 96.67 94.74 97.50 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 98.51 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 96.67 100.00 95.65 98.78 100.00 100.00 96.30 100.00 100.00 97.50 100.00 97.14 100.00 K intron_retention yellow-c chr2L + chr2L_15036992_15037050 chr2L_15036991_15036992;chr2L_15037050_15037051 chr2L_15036935_15036991;chr2L_15037051_15037095 97.22 97.14 96.77 96.83 96.55 96.43 98.55 93.55 97.37 91.67 95.24 98.04 96.77 96.77 97.22 97.18 97.30 95.24 100.00 100.00 96.67 100.00 98.61 100.00 100.00 94.74 98.04 94.12 100.00 96.67 98.04 100.00 100.00 98.39 95.83 100.00 97.30 96.55 96.88 97.56 100.00 96.55 96.55 93.75 97.14 100.00 100.00 96.00 97.33 96.67 97.56 97.22 100.00 100.00 97.22 96.97 97.30 100.00 K intron_retention caz,RI_chrX_16183356_16185973 chrX + chrX_16186677_16186918 chrX_16186676_16186677;chrX_16186918_16186919 chrX_16186228_16186676;chrX_16186919_16187489 0.51 0.55 0.78 0.80 0.34 0.69 0.60 1.07 0.39 0.00 0.00 0.91 0.00 1.69 0.58 1.63 0.45 0.71 1.74 0.43 0.00 0.27 0.54 1.17 0.50 0.00 1.96 0.91 1.05 0.20 0.21 0.42 0.22 0.93 0.62 0.28 0.35 0.15 0.51 0.65 0.44 0.37 0.40 0.50 0.15 0.51 0.72 0.24 1.13 0.66 1.13 0.65 0.26 0.32 0.62 0.74 0.90 0.16 K intron_retention CG5245,Pros25 chr3R + chr3R_8257383_8257467 chr3R_8257382_8257383;chr3R_8257467_8257468 chr3R_8257306_8257382;chr3R_8257468_8257723 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 K intron_retention I_chr3L_3223943_3224313,CG11505 chr3L + chr3L_3226540_3226876 chr3L_3226539_3226540;chr3L_3226876_3226877 chr3L_3226521_3226539;chr3L_3226877_3227705 13.96 14.29 NA 21.05 NA 0.00 19.23 13.16 12.50 NA NA 20.00 19.05 6.25 6.67 20.00 11.11 NA NA 11.76 NA 42.86 13.64 14.29 25.00 23.53 10.71 36.36 20.00 10.00 5.56 NA 17.39 22.22 NA 23.81 8.33 NA NA 10.64 NA 18.75 NA 0.00 NA NA NA 5.00 7.69 NA 6.67 NA NA NA 16.67 NA NA NA K intron_retention CG5382,CG5380 chr3R - chr3R_18190680_18190740 chr3R_18190679_18190680;chr3R_18190740_18190741 chr3R_18190245_18190679;chr3R_18190741_18190942 1.82 3.17 4.55 25.53 0.00 0.00 8.11 0.00 2.94 0.00 7.14 1.28 0.00 4.00 4.88 3.85 0.00 0.00 0.00 2.15 0.00 15.07 0.00 0.00 5.13 3.85 3.57 2.38 7.58 7.69 0.00 2.13 3.12 5.56 0.00 0.00 0.00 3.66 0.00 1.75 8.89 2.35 0.00 2.27 6.90 0.00 1.82 0.00 2.00 2.78 5.48 0.00 0.00 0.00 0.00 0.00 0.95 0.00 K intron_retention dmondo,I_chr2L_21289375_21289461,I_chr2L_21301528_21308287,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579 chr2L - chr2L_21289549_21289614 chr2L_21289548_21289549;chr2L_21289614_21289615 chr2L_21289462_21289548;chr2L_21289615_21289744 0.00 0.00 0.00 1.80 0.00 0.00 1.94 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA eIF5,I_chrX_15882955_15883078,RI_chrX_15883163_15883424,I_chrX_15883297_15883424,EI_chrX_15885411_15885854,RI_chrX_15885416_15885611 chrX - chrX_15883360_15883424;chrX_15883163_15883424;chrX_15883302_15883424 chrX_15883143_15883424 chrX_15883425_15883509;chrX_15883079_15883142 9.09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.09 K intron_retention ppk28 chrX + chrX_16701334_16701395 chrX_16701333_16701334;chrX_16701395_16701396 chrX_16700667_16701333;chrX_16701396_16701990 46.15 70.00 NA NA NA NA NA NA 47.37 NA NA NA NA NA NA NA NA 30.77 NA 40.00 NA NA 50.00 NA NA NA NA NA 70.00 NA 46.15 NA 46.15 53.33 NA NA NA NA 35.71 NA NA 36.84 NA 53.85 NA 58.33 NA 53.33 38.46 NA NA NA NA NA NA NA 45.45 45.45 K intron_retention pum,I_chr3R_4898752_4906279,I_chr3R_4989351_5039481 chr3R - chr3R_4906745_4982839 chr3R_4906744_4906745;chr3R_4982839_4982840 chr3R_4906280_4906744;chr3R_4982840_4983072 65.00 50.00 76.00 61.76 65.00 73.68 65.38 55.56 70.77 NA 45.83 67.39 68.42 73.91 68.18 81.82 60.71 76.47 72.22 63.16 57.14 NA 63.16 55.56 NA 74.07 60.00 NA NA 40.00 85.00 NA NA 65.00 69.23 NA 33.33 36.36 NA 55.00 NA 68.89 78.26 NA NA NA NA 57.14 66.67 NA 58.33 54.55 NA NA 73.08 NA NA NA K intron_retention CG10254 chr3R - chr3R_19515460_19515513 chr3R_19515459_19515460;chr3R_19515513_19515514 chr3R_19514728_19515459;chr3R_19515514_19515732 0.00 NA 0.00 0.00 0.00 0.00 0.00 6.25 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 4.17 NA NA NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA K jcn_only_AD smid,I_chr3L_7375166_7375310,I_chr3L_7375435_7375508 chr3L + chr3L_7375425_7375486 chr3L_7375435_7375486 chr3L_7375487_7375574;chr3L_7375335_7375424 100.00 98.20 100.00 100.00 100.00 100.00 100.00 100.00 99.55 100.00 100.00 99.41 100.00 98.51 100.00 98.80 100.00 100.00 100.00 99.50 100.00 100.00 100.00 100.00 100.00 98.85 99.25 100.00 100.00 100.00 100.00 100.00 99.14 100.00 98.25 100.00 99.40 99.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.00 100.00 99.36 100.00 100.00 98.11 98.11 100.00 100.00 97.53 98.88 100.00 K alternative_acceptor CG9799,I_chr3R_9213119_9213164 chr3R - chr3R_9213102_9213164 chr3R_9213119_9213164 chr3R_9213165_9213264;chr3R_9213019_9213101 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 1.37 0.00 1.33 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG17721,RI_chr3R_7061265_7061322 chr3R + chr3R_7061229_7061322 chr3R_7061265_7061322 chr3R_7061323_7061422;chr3R_7061165_7061228 12.20 12.20 11.76 15.15 4.76 8.33 7.32 20.00 19.15 14.58 9.52 12.20 4.76 13.04 12.90 8.70 13.64 12.50 6.25 16.67 16.00 14.81 1.89 6.90 8.82 0.00 5.56 7.14 19.35 13.64 9.09 18.18 NA 6.67 NA 16.67 7.69 14.71 15.38 9.09 14.29 10.26 8.33 12.50 13.33 14.04 15.15 14.71 16.13 9.09 9.09 6.25 3.03 15.38 13.04 9.62 6.67 17.86 K jcn_only_AA CG1418,RI_chr2R_5852050_5852138 chr2R - chr2R_5852050_5852138 chr2R_5852087_5852138 chr2R_5852139_5852207;chr2R_5852030_5852049 100.00 100.00 100.00 100.00 100.00 100.00 98.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.98 100.00 100.00 100.00 99.43 100.00 100.00 98.84 100.00 98.63 100.00 100.00 100.00 100.00 98.73 98.68 100.00 100.00 100.00 98.77 100.00 100.00 98.51 100.00 99.57 99.44 100.00 100.00 100.00 100.00 99.60 100.00 100.00 99.13 100.00 98.99 100.00 100.00 98.92 100.00 100.00 100.00 99.68 K intron_retention qkr58E-3,I_chr2R_18300846_18301656 chr2R - chr2R_18297902_18298043 chr2R_18297901_18297902;chr2R_18298043_18298044 chr2R_18297816_18297901;chr2R_18298044_18298133 0.00 3.85 0.00 0.93 0.00 0.00 0.00 0.00 0.85 0.00 0.00 4.21 5.00 0.00 2.99 0.00 0.00 2.13 1.89 0.00 0.00 2.08 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.62 0.00 0.00 1.27 NA 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG7188 chr3L - chr3L_8300481_8300893 chr3L_8300481_8300692;chr3L_8300833_8300893 chr3L_8300693_8300832 chr3L_8300192_8300480;chr3L_8300894_8301064 2.29 1.24 4.10 4.40 1.47 1.75 2.29 2.79 2.82 0.78 2.54 5.22 3.79 2.68 3.57 1.22 2.68 1.15 4.20 2.04 1.10 2.80 0.86 1.49 2.42 1.46 2.51 2.88 2.08 1.75 4.58 4.55 3.51 2.66 0.93 0.99 1.67 0.67 2.82 2.42 2.86 3.26 1.83 2.83 4.82 2.31 1.79 4.44 1.72 1.39 1.40 1.38 1.59 1.92 2.13 1.97 1.81 2.46 K jcn_only_AD cnn,I_chr2R_9333096_9336723,I_chr2R_9333096_9336812,RI_chr2R_9334834_9336719,I_chr2R_9347031_9370659 chr2R - chr2R_9334834_9336723;chr2R_9334834_9336501;chr2R_9334834_9336719 chr2R_9334834_9336812 chr2R_9334744_9334833;chr2R_9336813_9336819 19.62 NA NA 12.90 NA NA 15.38 18.92 16.67 NA NA 24.14 39.13 NA NA 17.14 NA NA NA 25.64 NA 34.21 20.00 NA NA NA 27.59 19.23 NA 14.29 NA NA 27.59 NA NA 29.63 19.23 NA NA 15.38 NA 15.00 NA 20.00 NA 39.13 NA 24.00 6.06 33.33 3.85 NA NA NA NA NA NA NA K intron_retention CG9855,I_chr3R_223384_223429 chr3R - chr3R_222779_222833 chr3R_222778_222779;chr3R_222833_222834 chr3R_222582_222778;chr3R_222834_223362 7.27 7.69 8.57 8.93 3.85 0.00 7.41 5.77 9.30 5.00 0.00 5.45 0.00 0.00 9.09 8.33 6.25 2.94 8.00 6.78 12.00 4.76 4.88 7.27 3.03 0.00 7.27 3.85 8.57 5.00 17.39 6.67 0.00 10.87 0.00 5.71 11.54 11.11 1.82 12.20 12.50 6.45 4.55 10.00 9.52 8.51 11.43 2.38 10.20 18.42 4.26 7.41 10.71 6.98 2.44 11.63 9.62 15.38 K jcn_only_AD msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585739_2586265;chr3L_2585739_2586402;chr3L_2585739_2586413 chr3L_2585739_2586036 chr3L_2585639_2585738;chr3L_2586414_2586502 4.83 6.93 4.21 4.27 2.61 5.24 10.08 3.17 5.01 7.35 3.70 3.91 2.41 4.74 3.49 3.60 5.67 6.36 3.38 2.05 6.90 3.87 5.83 6.30 4.44 5.61 7.02 7.25 8.12 4.83 2.55 4.00 3.19 6.44 5.45 3.61 8.73 5.07 2.63 8.20 5.84 2.94 3.82 16.02 3.60 5.78 4.55 6.37 3.19 7.14 2.86 4.84 8.00 2.00 4.90 4.50 9.62 3.27 K intron_retention I_chr3R_7040337_7041144,RpS25,I_chr3R_7041333_7041414,I_chr3R_7041347_7041556,RI_chr3R_7044164_7044221 chr3R - chr3R_7041092_7041144 chr3R_7041091_7041092;chr3R_7041144_7041145 chr3R_7040952_7041091;chr3R_7041145_7041244 99.42 98.29 97.71 99.82 100.00 99.32 98.83 99.78 99.33 98.41 98.88 99.09 99.16 100.00 100.00 99.42 99.51 98.83 99.63 99.69 98.75 99.51 100.00 100.00 100.00 100.00 97.87 100.00 100.00 97.59 99.62 100.00 99.10 100.00 98.86 100.00 98.73 98.04 98.65 99.53 99.34 99.25 99.42 100.00 100.00 98.91 96.97 99.32 100.00 100.00 98.80 98.57 99.41 96.88 100.00 99.22 99.42 100.00 K intron_retention CG4662 chr3R + chr3R_15677641_15677744 chr3R_15677640_15677641;chr3R_15677744_15677745 chr3R_15677554_15677640;chr3R_15677745_15678147 0.00 0.00 0.00 0.00 NA 0.00 13.33 0.00 3.23 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 3.70 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K alternative_acceptor cerv,RI_chrX_15471783_15471843 chrX - chrX_15471783_15471843 chrX_15471799_15471843 chrX_15471844_15471943;chrX_15471683_15471782 61.82 NA NA NA NA NA 71.43 69.23 90.91 NA NA 66.67 NA NA NA 53.33 NA NA NA 77.78 NA NA 46.67 71.43 NA NA NA NA NA NA 18.75 NA NA 63.64 NA NA NA NA NA NA NA 53.33 NA NA NA 50.00 NA NA 66.67 45.45 87.50 NA NA 55.56 NA 60.00 41.67 NA K intron_retention CE_chrX_20766225_20927825,CG1518,snoRNA:Me28S-U3344a chrX - chrX_20923231_20923436 chrX_20923230_20923231;chrX_20923436_20923437 chrX_20922943_20923230;chrX_20923437_20923826 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.33 0.00 0.00 0.32 0.57 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention Pvr,I_chr2L_8226604_8228082,I_chr2L_8229001_8230124,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8226607_8228493 chr2L_8226606_8226607;chr2L_8228493_8228494 chr2L_8226458_8226606;chr2L_8228494_8229011 59.26 25.00 100.00 50.00 100.00 100.00 60.00 65.79 52.00 NA NA 70.00 46.88 100.00 65.52 100.00 100.00 100.00 100.00 100.00 47.06 100.00 33.33 43.59 55.56 100.00 37.21 NA NA 43.48 32.43 NA 55.00 59.26 46.67 65.00 44.74 36.00 37.93 51.35 41.67 59.18 100.00 62.50 NA NA NA 100.00 68.63 35.00 53.85 40.00 NA NA 69.23 100.00 NA NA N cassette inaE chrX + chrX_13697884_13698155 chrX_13697884_13697941;chrX_13698084_13698155 chrX_13697942_13698083 chrX_13697359_13697883;chrX_13698156_13698260 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.46 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG32176,RI_chr3L_17427238_17427301 chr3L + chr3L_17427557_17429423 chr3L_17427556_17427557;chr3L_17429423_17429424 chr3L_17427494_17427556;chr3L_17429424_17429477 10.53 NA NA NA NA NA 28.57 NA 19.05 NA NA NA NA NA NA 5.88 NA NA NA 10.53 NA NA 0.00 NA NA NA NA NA NA NA 21.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA K cassette RhoGAP19D,EI_chrX_20347839_20348139,DMG4-MB6.chrX.37.001,RI_chrX_20380495_20381649 chrX - chrX_20347839_20348292;chrX_20347836_20348292 chrX_20347836_20348139,chrX_20347839_20348139;chrX_20348215_20348292 chrX_20348140_20348214 chrX_20347739_20347835;chrX_20348293_20348380 12.50 13.04 13.04 6.06 11.76 13.04 10.71 10.71 14.63 31.82 12.50 12.50 7.14 14.29 12.50 21.74 18.18 19.05 NA 10.42 6.25 13.64 8.51 9.68 14.29 5.56 13.95 17.39 11.11 7.41 11.11 NA 22.22 11.43 13.04 10.00 9.80 9.68 11.76 25.71 NA 14.89 17.65 17.14 NA NA NA 12.50 9.52 NA 15.15 9.09 7.69 NA 17.39 NA NA 6.25 K intron_retention Pfk,I_chr2R_5999081_6000140,E_chr2R_6001157_6001630 chr2R + chr2R_6004163_6004241 chr2R_6004162_6004163;chr2R_6004241_6004242 chr2R_6003320_6004162;chr2R_6004242_6004330 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention B52,F_chr3R_9488762_9491174,E_chr3R_9488770_9491174 chr3R + chr3R_9488127_9488691 chr3R_9488126_9488127;chr3R_9488691_9488692 chr3R_9488019_9488126;chr3R_9488692_9488761 0.42 0.00 0.00 0.00 0.52 0.00 0.47 0.00 0.19 1.57 0.00 0.56 2.70 1.40 0.88 0.00 0.00 0.00 1.23 0.42 0.00 0.43 1.58 0.00 1.57 0.00 4.12 2.43 0.00 0.00 1.31 0.00 0.44 0.38 0.00 1.12 0.72 0.68 1.36 0.47 0.47 0.38 0.00 2.11 0.15 0.61 0.00 0.58 0.00 0.00 1.52 0.66 0.00 0.00 0.00 0.81 0.47 0.22 K intron_retention MB6.chr2R.pasa.5049,CG3589 chr2R + chr2R_20663273_20666834 chr2R_20663272_20663273;chr2R_20666834_20666835 chr2R_20663234_20663272;chr2R_20666835_20667451 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.41 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG3338,Psf2 chr2L - chr2L_4385260_4385315 chr2L_4385259_4385260;chr2L_4385315_4385316 chr2L_4384085_4385259;chr2L_4385316_4385822 0.00 0.00 NA 4.35 NA 14.29 0.00 0.00 0.00 NA NA 0.00 NA NA NA 4.55 NA NA 6.67 0.00 NA 0.00 0.00 NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA 9.52 NA NA NA NA NA 0.00 NA NA NA K jcn_only_AA CG7231 chr2L + chr2L_7985769_7985833 chr2L_7985769_7985814 chr2L_7985553_7985768;chr2L_7985834_7986075 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA K intron_retention R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083458_8089393 chr2L_8083457_8083458;chr2L_8089393_8089394 chr2L_8083444_8083457;chr2L_8089394_8089493 100.00 NA NA 100.00 NA NA 100.00 93.75 100.00 NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA NA 100.00 100.00 NA NA NA NA 100.00 100.00 100.00 100.00 100.00 95.00 100.00 NA 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA 100.00 K cassette CG8929 chr2R + chr2R_16214899_16215831;chr2R_16214899_16215371 chr2R_16214899_16214948;chr2R_16215075_16215371,chr2R_16215075_16215831 chr2R_16214949_16215074 chr2R_16214792_16214898;chr2R_16215832_16216526 12.50 14.29 14.00 10.91 20.00 13.33 16.95 13.56 14.29 13.33 21.43 9.88 17.24 14.29 14.29 14.00 16.67 15.00 12.50 13.25 16.67 1.79 12.31 7.02 5.71 13.64 21.88 14.29 20.00 5.26 14.58 4.17 4.76 18.87 5.00 4.35 8.33 10.81 11.63 15.38 11.76 12.68 17.24 12.50 3.45 3.45 9.52 12.50 12.00 7.14 8.00 11.76 10.26 1.82 8.89 10.00 6.82 8.51 K jcn_only_AD CG4293,RI_chrX_423385_423664,I_chrX_423385_423676 chrX - chrX_423385_423442;chrX_423385_423676 chrX_423385_423664 chrX_423285_423384;chrX_423677_423764 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 1.85 0.00 5.00 0.00 0.00 NA 3.33 0.00 0.00 0.00 0.00 0.00 5.71 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 1.32 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 2.78 0.00 0.00 NA 3.12 NA 0.00 0.00 0.00 0.00 K intron_retention Asator chr4 - chr4_502331_502436 chr4_502330_502331;chr4_502436_502437 chr4_501835_502330;chr4_502437_502451 0.00 NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_last_exon RI_chr2R_12650846_12659758,Sod2 chr2R - chr2R_12661144_12661368 chr2R_12661312_12661368,chr2R_12661315_12661368 chr2R_12659763_12661143 chr2R_12661260_12661311 chr2R_12661369_12661392 35.41 50.00 NA 40.00 40.00 NA 25.00 25.00 37.50 33.33 66.67 60.00 NA 33.33 20.00 NA 50.00 66.67 0.00 50.00 66.67 0.00 NA 0.00 NA 50.00 NA NA 33.33 0.00 33.33 0.00 50.00 33.33 NA NA 25.00 NA 40.00 50.00 33.33 42.86 NA 0.00 NA NA 33.33 37.50 NA NA NA NA NA NA 50.00 0.00 50.00 NA K alternative_acceptor SdhC,CG6672 chr3R - chr3R_7035448_7035519 chr3R_7035463_7035519 chr3R_7035520_7035588;chr3R_7034856_7035447 100.00 100.00 100.00 98.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 98.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 99.26 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Hairless chr3R + chr3R_16447850_16448305;chr3R_16448221_16448305 chr3R_16447945_16448305 chr3R_16448306_16449020;chr3R_16447843_16447849 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 2.63 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K alternative_donor CG4119 chrX + chrX_5560355_5560409;chrX_5560351_5560409 chrX_5560347_5560409 chrX_5560410_5560501;chrX_5560114_5560346 48.78 60.78 34.78 31.82 44.44 34.78 30.43 36.00 43.86 62.96 47.83 50.00 30.43 50.00 31.58 28.00 57.14 46.67 37.50 51.16 47.62 61.54 44.00 60.38 48.78 19.05 47.92 51.06 21.43 46.30 39.13 59.46 45.28 45.95 75.00 34.15 55.34 57.75 59.38 58.18 51.72 47.46 36.84 65.22 64.10 53.12 55.56 58.33 37.50 54.35 53.62 61.29 66.67 62.50 48.48 66.67 58.82 46.15 K intron_retention CG6607,ana1 chr3R + chr3R_20355226_20355284 chr3R_20355225_20355226;chr3R_20355284_20355285 chr3R_20354704_20355225;chr3R_20355285_20355544 3.90 0.00 0.00 3.23 0.00 3.03 10.87 0.00 3.90 0.00 0.00 1.82 4.65 0.00 0.00 0.00 9.09 0.00 3.33 4.49 5.26 11.76 5.97 0.00 17.50 9.52 11.48 13.04 14.00 5.41 0.00 0.00 0.00 5.17 6.06 8.93 6.56 0.00 4.48 6.35 18.97 3.03 0.00 0.00 0.00 4.62 4.48 10.81 3.33 5.56 2.08 5.13 2.27 4.84 6.25 5.06 1.82 0.00 K intron_retention CREF_chr3R_5589662_5589762,RpS29,RI_chr3R_5604591_5604645,CG8500 chr3R + chr3R_5604441_5604498 chr3R_5604440_5604441;chr3R_5604498_5604499 chr3R_5604341_5604440;chr3R_5604499_5604590 0.00 0.00 0.03 0.00 0.00 0.00 0.01 0.02 0.02 0.00 0.00 0.01 0.00 0.02 0.00 0.00 0.02 0.00 0.00 0.02 0.04 0.00 0.00 0.00 0.00 0.05 0.04 0.16 0.81 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 K jcn_only_AA Ptpmeg,I_chr3L_353688_353782,I_chr3L_355125_355175 chr3L + chr3L_353688_353782 chr3L_353688_353760 chr3L_353588_353687;chr3L_353783_353882 100.00 98.65 98.18 100.00 95.35 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.23 100.00 100.00 97.06 100.00 98.63 94.74 100.00 100.00 100.00 100.00 98.68 100.00 100.00 99.24 100.00 100.00 100.00 98.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.49 98.15 100.00 100.00 100.00 98.67 K alternative_donor CG7177 chr3L - chr3L_21547281_21547665;chr3L_21547281_21547653 chr3L_21547281_21547480 chr3L_21547125_21547280;chr3L_21547666_21547994 25.00 NA 44.44 29.41 14.29 10.00 22.73 35.00 21.74 40.00 18.18 17.39 16.67 20.00 14.29 34.38 11.11 22.22 30.00 24.00 60.00 18.75 35.71 30.00 25.00 20.00 40.00 45.45 36.84 44.44 25.00 NA 45.00 16.67 14.29 45.45 35.71 50.00 44.44 37.50 NA 25.00 25.00 22.22 NA 25.00 16.67 21.05 30.00 NA 27.27 NA NA NA 21.43 NA NA 28.57 K jcn_only_AA CG3760,CG3770,CG12851 chr2R + chr2R_20826741_20826796;chr2R_20826741_20826799 chr2R_20826741_20826793 chr2R_20826672_20826740;chr2R_20826800_20826860 88.31 94.01 91.49 92.81 84.75 80.60 92.08 84.93 87.45 87.20 85.15 90.61 98.65 89.01 79.53 91.75 76.92 88.30 88.31 88.31 84.55 89.95 85.32 90.37 89.38 87.62 86.59 86.67 86.29 87.73 86.81 88.83 87.34 87.03 84.62 87.33 88.02 93.92 89.93 92.91 90.43 85.27 84.52 90.65 88.58 89.49 88.73 90.56 82.59 90.24 90.87 91.11 90.95 90.13 86.99 87.40 89.23 87.16 K jcn_only_AA shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9770053_9771599 chr2R_9771216_9771599 chr2R_9771600_9771660;chr2R_9769906_9770052 1.12 1.30 2.06 3.73 2.53 1.11 0.00 3.01 1.79 0.00 1.56 0.00 0.79 0.00 1.85 0.00 0.00 2.13 0.98 1.09 0.00 0.91 6.45 3.45 0.00 0.00 2.86 1.04 4.00 3.23 3.03 NA 0.00 1.25 0.00 0.00 0.51 0.00 2.56 1.18 NA 1.97 1.12 5.88 NA NA 0.00 7.55 0.66 NA 1.75 0.00 0.00 NA 2.10 NA NA NA K jcn_only_AA enc chr3L + chr3L_3839524_3839632 chr3L_3839524_3839605 chr3L_3839424_3839523;chr3L_3839633_3840770 0.00 0.00 2.13 3.39 3.85 0.00 3.70 0.00 1.04 5.71 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 2.17 0.00 0.00 0.00 0.88 1.03 1.72 3.03 0.00 0.00 0.00 1.52 2.44 NA 2.38 1.49 1.69 0.00 0.00 1.19 0.00 1.14 0.00 1.39 0.00 0.00 0.00 3.51 1.35 0.00 2.63 3.03 1.35 0.00 1.54 0.00 1.72 0.00 0.00 0.00 K intron_retention I_chrX_4000307_4003527,CG4857 chrX + chrX_4014458_4014534 chrX_4014457_4014458;chrX_4014534_4014535 chrX_4014329_4014457;chrX_4014535_4014601 0.00 0.00 0.00 3.19 0.00 5.00 0.00 2.13 2.56 NA 0.00 0.00 0.00 0.00 0.00 1.59 2.50 0.00 1.89 0.00 0.00 3.77 0.00 4.44 0.00 0.00 4.65 8.33 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 3.12 0.00 0.00 0.00 2.33 3.85 0.00 0.00 0.00 0.00 0.00 3.96 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 K jcn_only_AD CG4250,I_chr2R_18551419_18551493,E_chr2R_18551558_18551756 chr2R + chr2R_18551380_18551493 chr2R_18551419_18551493 chr2R_18551494_18551557;chr2R_18551319_18551379 0.35 0.00 0.00 0.15 0.83 0.29 0.32 0.30 0.58 1.67 0.58 0.43 1.64 0.00 2.14 0.35 0.36 0.54 0.63 0.77 0.00 1.06 0.00 0.00 0.00 0.33 0.40 0.00 1.15 0.36 0.48 0.38 0.49 0.19 0.39 0.85 0.65 0.00 0.25 0.24 0.28 0.13 0.00 0.36 0.50 0.14 0.00 0.85 0.54 0.25 0.00 0.00 0.52 0.00 0.44 0.00 0.33 0.74 K intron_retention I_chrX_17751392_17751520,CG6769 chrX + chrX_17756234_17756306 chrX_17756233_17756234;chrX_17756306_17756307 chrX_17755871_17756233;chrX_17756307_17756808 0.00 0.00 0.00 1.43 1.04 0.00 0.00 0.00 0.51 0.00 0.00 1.04 0.00 0.00 0.89 0.00 0.00 0.00 1.23 0.97 2.17 1.72 0.00 1.57 0.00 1.39 3.31 3.50 3.81 0.63 0.00 1.22 0.58 0.00 0.00 0.00 0.00 0.00 0.98 0.89 0.68 2.09 0.00 0.00 0.00 0.43 0.43 0.00 1.69 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.54 0.40 K cassette Vrp1,I_chr2R_17996482_17997091,I_chr2R_17996511_17997091,I_chr2R_17997529_17997692 chr2R - chr2R_17996286_17997091 chr2R_17996286_17996355;chr2R_17996511_17997091 chr2R_17996356_17996510 chr2R_17995991_17996285;chr2R_17997092_17997191 8.54 3.85 10.81 2.53 9.43 9.52 16.36 11.39 7.14 4.20 19.57 7.41 12.90 9.09 7.35 10.64 8.51 43.75 11.67 6.35 19.51 38.79 3.43 5.80 9.00 10.77 9.93 8.28 12.24 5.20 5.56 13.75 9.93 11.00 5.93 8.00 4.96 6.20 5.12 9.52 14.94 8.94 6.52 8.87 8.72 8.55 7.14 13.77 5.13 9.22 8.54 6.35 2.20 5.88 7.32 4.90 4.04 5.56 K jcn_only_AD Eph,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_640804_640879;chr4_640734_640879 chr4_640676_640879 chr4_640880_640963;chr4_640576_640675 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 NA 7.69 3.12 2.00 4.76 NA 0.00 0.00 NA 0.00 0.00 NA NA NA 5.56 NA NA 0.00 NA NA NA NA NA 0.00 0.00 2.27 0.00 0.00 4.17 0.00 NA 4.35 4.41 NA 5.88 NA NA NA 0.00 0.00 NA NA K alternative_acceptor CG8184,I_chrX_15620707_15620769 chrX + chrX_15615433_15615596 chrX_15615433_15615578 chrX_15610325_15615432;chrX_15615597_15617013 57.14 56.67 54.84 71.43 53.85 66.67 34.09 48.08 49.28 57.14 50.00 55.32 50.00 61.11 51.16 58.62 51.61 63.64 66.67 47.62 57.69 67.65 61.36 51.72 50.00 65.38 58.06 57.14 58.33 61.54 70.97 58.33 63.33 58.54 55.17 65.62 58.62 50.00 60.38 54.24 66.67 58.82 50.00 60.47 51.72 57.14 50.00 62.50 56.25 40.00 51.02 61.11 50.00 75.00 56.82 66.67 43.75 65.22 K cassette MRP,F_chr2L_12727117_12736035 chr2L + chr2L_12727117_12737958 chr2L_12727117_12736592;chr2L_12736814_12737958 chr2L_12736593_12736813 chr2L_12727017_12727116;chr2L_12737959_12738176 19.35 16.28 26.47 31.25 25.00 22.22 34.72 29.17 25.86 17.50 35.71 55.38 28.00 30.00 19.35 26.32 25.81 15.38 28.12 50.00 29.63 7.74 12.59 11.11 10.61 27.27 11.36 7.89 10.08 15.29 14.04 23.26 18.69 26.92 16.07 21.50 10.99 8.54 8.08 17.95 28.26 27.78 27.59 9.52 16.00 19.15 11.36 30.12 27.91 6.19 9.22 15.91 11.43 7.55 28.57 8.57 20.83 40.43 K alternative_last_exon I_chrX_15223901_15223968,HDAC6,I_chrX_15232958_15233665 chrX + chrX_15232699_15233659 chrX_15232699_15232869 chrX_15233660_15234394 chrX_15232870_15233125 chrX_15232108_15232698 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 12.50 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 6.25 8.33 0.00 0.00 5.00 K intron_retention dpr17 chr3R + chr3R_7936410_7936553 chr3R_7936409_7936410;chr3R_7936553_7936554 chr3R_7936304_7936409;chr3R_7936554_7936755 0.00 3.12 0.00 3.03 6.67 0.00 0.00 0.00 3.39 NA NA 3.39 0.00 6.25 0.00 0.00 0.00 0.00 4.17 2.38 0.00 2.38 1.02 1.61 0.00 2.94 2.17 15.79 8.57 0.00 0.00 0.00 0.00 0.00 0.00 8.33 2.90 2.00 2.25 0.00 0.00 4.76 4.55 1.47 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 2.60 1.19 3.23 K intron_retention Lnk,RI_chr3R_21714780_21715376 chr3R + chr3R_21717790_21718170 chr3R_21717789_21717790;chr3R_21718170_21718171 chr3R_21716440_21717789;chr3R_21718171_21718878 3.95 7.69 0.00 6.67 0.00 0.00 6.56 4.76 4.90 5.26 0.00 4.85 4.44 2.04 4.88 1.12 6.25 0.00 3.85 4.88 5.71 5.88 5.06 4.11 1.72 2.70 5.48 7.69 4.12 3.95 3.37 2.90 2.59 4.65 5.48 0.00 2.70 0.00 1.12 5.56 2.61 5.50 0.00 3.39 5.68 4.43 2.33 4.73 8.25 1.20 1.19 1.64 0.00 0.00 5.45 2.38 1.20 4.74 K intron_retention CaMKII,I_chr4_1059085_1060638,I_chr4_1059085_1065781,RI_chr4_1061742_1064093,RI_chr4_1061742_1065781,I_chr4_1061989_1065781,RI_chr4_1063745_1065781,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,RI_chr4_1071489_1071968,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1059064_1065781 chr4_1059063_1059064;chr4_1065781_1065782 chr4_1059016_1059063;chr4_1065782_1065874 0.00 NA NA 0.00 NA NA 9.68 0.00 8.33 NA NA 0.00 NA 0.00 NA 6.25 NA 0.00 0.00 0.00 0.00 NA NA NA NA NA NA NA NA NA 0.00 0.00 NA 4.88 NA NA NA NA NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K cassette Nopp140,I_chr3L_21828330_21828566,I_chr3L_21828986_21829082 chr3L + chr3L_21827930_21828566 chr3L_21827930_21828170;chr3L_21828330_21828566 chr3L_21828171_21828329 chr3L_21827465_21827929;chr3L_21828567_21828666 25.84 31.00 21.57 26.53 23.44 24.21 23.01 27.92 25.84 29.20 29.23 23.98 21.95 25.64 21.57 19.84 24.24 28.71 20.93 29.32 27.12 8.09 30.49 29.55 39.51 23.86 37.74 40.76 24.65 25.95 17.27 19.08 23.17 21.74 20.95 30.09 35.66 28.70 25.00 24.78 25.30 25.12 24.39 30.97 35.76 25.36 30.58 20.16 27.03 26.50 28.80 26.76 31.55 35.90 21.55 28.57 36.31 25.22 K intron_retention noncoding_7854 chr2R + chr2R_14663212_14663384 chr2R_14663211_14663212;chr2R_14663384_14663385 chr2R_14663174_14663211;chr2R_14663385_14663822 73.33 75.68 81.82 82.35 82.61 77.42 70.45 68.42 60.00 53.33 68.18 64.18 66.67 74.07 77.55 83.64 73.33 75.76 82.35 76.19 67.86 69.57 69.57 64.10 72.73 83.33 72.09 88.89 85.71 60.00 54.55 79.41 76.92 82.61 69.57 78.79 64.29 59.09 65.22 69.23 75.00 73.61 75.00 91.30 84.09 86.36 68.42 78.57 73.17 70.00 65.96 66.67 63.64 79.41 75.61 70.21 72.00 76.74 K jcn_only_AA nvy,I_chr2R_20177146_20177208 chr2R + chr2R_20177146_20177208 chr2R_20177146_20177203 chr2R_20177046_20177145;chr2R_20177209_20177308 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 NA 100.00 95.45 NA 100.00 NA NA NA 96.30 100.00 NA 99.19 100.00 100.00 100.00 NA 100.00 98.59 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 100.00 98.28 100.00 97.06 NA 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 NA 100.00 97.14 NA 100.00 97.01 97.06 K alternative_donor foi,I_chr3L_8520658_8520733,I_chr3L_8524905_8524976 chr3L + chr3L_8518753_8523659;chr3L_8518805_8523659 chr3L_8518490_8523659 chr3L_8523660_8524249;chr3L_8518407_8518489 5.71 2.35 6.06 7.20 3.90 4.40 0.85 3.76 3.55 8.24 5.95 0.66 2.86 3.53 5.71 4.63 6.49 3.30 3.53 6.47 5.26 10.29 6.90 5.31 7.95 1.19 2.86 8.65 13.40 5.74 6.19 5.56 7.07 5.38 4.40 5.98 6.47 3.12 2.07 6.60 8.79 3.55 5.71 8.18 9.46 6.06 14.29 5.85 2.58 7.69 3.17 2.82 5.56 8.51 5.31 5.41 9.52 6.52 K jcn_only_AA RpL27A,E_chr2L_4457411_4457977,I_chr2L_4458058_4458120 chr2L - chr2L_4457290_4457374;chr2L_4457275_4457374 chr2L_4457319_4457374 chr2L_4457375_4457410;chr2L_4457188_4457274 0.03 0.04 0.03 0.03 0.07 0.03 0.00 0.02 0.05 0.12 0.03 0.09 0.07 0.00 0.00 0.06 0.00 0.06 0.03 0.04 0.11 0.03 0.00 0.03 0.11 0.05 0.00 0.08 0.07 0.18 0.00 0.04 0.00 0.00 0.13 0.00 0.08 0.07 0.09 0.02 0.05 0.05 0.03 0.00 0.03 0.03 0.07 0.00 0.04 0.03 0.11 0.00 0.08 0.14 0.00 0.11 0.00 0.02 K intron_retention Fur2,RI_chrX_16267905_16268958,I_chrX_16270205_16270272,I_chrX_16274795_16274867 chrX + chrX_16270201_16270272 chrX_16270200_16270201;chrX_16270272_16270273 chrX_16270138_16270200;chrX_16270273_16270372 83.05 83.05 82.19 84.68 82.61 79.75 93.24 75.00 83.47 80.00 86.00 79.37 90.20 88.24 83.13 77.32 72.58 83.61 77.22 87.22 86.89 74.29 79.76 83.33 85.11 90.41 81.71 80.00 83.61 78.57 79.71 84.38 57.97 85.59 83.05 97.62 83.10 83.33 89.29 81.25 87.88 82.64 80.30 83.05 78.79 78.33 81.08 83.33 79.22 83.78 80.56 88.68 81.82 94.44 83.13 76.92 77.42 77.42 K alternative_acceptor cni,RI_chr2L_16309575_16309999,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16310624_16310690;chr2L_16310641_16310690 chr2L_16310637_16310690 chr2L_16310691_16310700;chr2L_16310441_16310623 17.86 27.27 13.24 13.85 17.86 17.46 18.97 16.00 16.13 20.00 6.00 20.91 15.69 13.85 22.22 11.86 10.00 32.14 9.28 19.80 17.07 21.21 25.49 22.58 18.75 31.11 9.68 16.67 37.93 8.70 27.14 27.27 25.93 16.06 36.36 17.39 20.45 17.78 16.95 37.29 18.18 8.85 16.42 35.90 36.11 27.50 17.14 37.04 17.29 30.00 7.84 12.77 20.00 38.46 13.83 23.81 17.39 12.50 K alternative_donor Gel,I_chr3R_63540_64006,I_chr3R_63962_64024,I_chr3R_66533_66599 chr3R + chr3R_63540_64024 chr3R_63962_64024 chr3R_64025_64099;chr3R_63440_63539 0.77 0.44 0.69 0.69 0.54 0.57 1.29 0.56 0.65 1.16 0.59 0.77 0.45 0.51 0.92 1.04 0.54 0.95 0.45 0.56 1.03 8.76 0.91 0.72 2.05 1.22 1.62 2.80 2.75 0.92 0.58 0.84 2.70 0.61 1.04 2.86 0.87 0.72 0.60 2.59 4.81 0.52 0.60 0.88 1.40 0.45 0.93 5.81 0.72 0.80 0.60 2.15 0.00 0.55 0.37 0.38 0.59 2.54 K intron_retention ens,I_chr3L_4130719_4131120 chr3L - chr3L_4127163_4128613 chr3L_4127162_4127163;chr3L_4128613_4128614 chr3L_4126989_4127162;chr3L_4128614_4128627 50.00 33.33 41.67 NA NA 25.00 NA 60.00 40.00 NA NA 58.33 NA 63.64 NA 70.00 NA 25.93 NA 38.24 NA 88.89 35.00 41.67 NA NA NA 54.55 42.11 60.00 NA NA 55.56 43.75 50.00 75.00 50.00 38.46 43.75 52.00 30.77 45.45 NA 50.00 30.00 50.00 28.57 74.29 52.94 NA 50.00 NA 63.64 NA 41.67 NA NA 52.00 K intron_retention TM9SF4,I_chr2L_13774105_13774160 chr2L + chr2L_13773323_13773382 chr2L_13773322_13773323;chr2L_13773382_13773383 chr2L_13773184_13773322;chr2L_13773383_13773888 2.74 1.89 6.33 5.10 5.36 0.00 4.17 3.38 2.48 5.56 5.26 2.88 0.00 1.59 2.15 4.00 3.77 2.74 2.22 3.43 0.00 3.39 0.00 0.00 6.00 8.33 12.31 8.16 27.87 0.00 0.00 2.30 3.57 2.42 2.56 8.47 1.67 5.26 2.82 0.70 7.89 3.21 0.00 0.00 2.44 2.04 1.19 3.75 0.75 2.90 0.00 0.00 0.00 2.53 1.09 6.33 2.90 4.08 K intron_retention RpS5a,I_chrX_17037805_17038646,I_chrX_17037805_17039048,I_chrX_17037805_17040830,snoRNA:Psi28S-1192d,snoRNA:Psi28S-1192c,snoRNA:Psi28S-1192b,snoRNA:Psi28S-1192a,I_chrX_17038786_17039048,snoRNA:Psi28S-2876,snoRNA:Psi18S-1854c,snoRNA:Psi28S-1135f,snoRNA:Psi18S-1854b,snoRNA:Psi28S-1135e,snoRNA:Psi18S-1854a,snoRNA:Psi28S-1135d,snoRNA:Psi28S-1135c,snoRNA:Psi28S-1135b,snoRNA:Psi28S-1135a chrX - chrX_17037805_17038650 chrX_17037804_17037805;chrX_17038650_17038651 chrX_17037705_17037804;chrX_17038651_17038746 0.02 0.02 0.03 0.02 0.00 0.00 0.01 0.02 0.01 0.00 0.00 0.03 0.00 0.03 0.01 0.04 0.00 0.00 0.03 0.03 0.03 0.03 0.05 0.00 0.02 0.04 0.03 0.08 0.03 0.03 0.03 0.00 0.04 0.02 0.02 0.03 0.01 0.02 0.01 0.01 0.02 0.01 0.00 0.00 0.02 0.02 0.03 0.00 0.05 0.01 0.02 0.00 0.02 0.02 0.03 0.00 0.01 0.00 K intron_retention CG3056 chrX + chrX_1266301_1266493 chrX_1266300_1266301;chrX_1266493_1266494 chrX_1266119_1266300;chrX_1266494_1267080 0.00 0.00 1.82 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.94 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.95 0.00 3.12 0.00 0.00 0.00 0.00 4.60 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 3.03 0.00 0.00 0.00 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 1.72 0.00 0.00 K intron_retention CdsA,mus301 chr3L + chr3L_8121470_8122183 chr3L_8121469_8121470;chr3L_8122183_8122184 chr3L_8121154_8121469;chr3L_8122184_8122308 0.00 0.00 0.00 0.00 0.00 0.00 9.26 0.00 0.95 0.00 2.56 2.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 6.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 2.22 0.00 0.00 1.67 0.00 0.00 2.50 K intron_retention pAbp,I_chr2R_14027838_14028996 chr2R + chr2R_14028922_14028996 chr2R_14028921_14028922;chr2R_14028996_14028997 chr2R_14028916_14028921;chr2R_14028997_14029096 48.08 NA NA 56.25 NA NA 64.29 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 41.67 NA NA NA 46.15 55.00 38.46 NA NA NA NA NA NA 66.67 23.81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette bbc,I_chr2R_9376554_9377246,REI_chr2R_9379401_9381986 chr2R - chr2R_9375638_9378939;chr2R_9376554_9378939 chr2R_9376554_9377246,chr2R_9375638_9377246;chr2R_9377379_9378939 chr2R_9377247_9377378 chr2R_9375479_9375637;chr2R_9378940_9379098 12.00 7.02 18.18 10.34 8.89 12.90 15.56 18.06 17.58 5.56 7.69 21.05 12.82 26.47 15.56 25.88 13.16 8.47 15.25 10.48 7.89 16.67 12.36 8.54 12.00 8.11 6.76 8.20 8.11 11.76 16.67 10.00 21.43 23.08 18.18 6.38 5.15 4.35 4.23 10.94 14.29 14.10 13.51 10.00 4.65 13.89 12.50 18.75 19.23 8.33 9.62 14.63 3.12 12.12 12.00 5.66 7.14 17.65 K jcn_only_AD CG32579,I_chrX_16217978_16218111,I_chrX_16218930_16219644 chrX + chrX_16217963_16218111 chrX_16217978_16218111 chrX_16218112_16218211;chrX_16217878_16217962 2.13 0.00 0.00 4.44 2.38 2.13 4.35 2.97 4.24 6.90 0.00 2.35 3.03 1.72 9.09 1.30 2.17 0.00 3.23 1.96 0.00 1.37 0.00 2.78 2.38 4.17 7.69 2.38 3.53 3.45 2.65 0.00 3.33 1.35 3.08 2.22 0.00 0.00 1.75 0.00 3.16 2.27 0.00 0.00 0.00 3.39 0.00 3.55 0.00 1.67 1.69 0.00 2.38 0.00 1.92 2.17 0.00 0.61 K alternative_acceptor CG31169,I_chr3R_18209085_18209133 chr3R + chr3R_18209227_18209283 chr3R_18209227_18209280 chr3R_18209173_18209226;chr3R_18209284_18209921 74.16 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 73.33 NA NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention mth chr3L - chr3L_343653_343954 chr3L_343652_343653;chr3L_343954_343955 chr3L_343440_343652;chr3L_343955_344039 11.11 NA NA NA NA NA NA NA 33.33 NA 11.11 36.36 NA NA NA 28.57 NA 3.57 NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.56 NA 8.33 NA NA NA NA NA NA NA NA NA 4.17 K jcn_only_AD Ect4,C_chr3L_8091754_8101552,I_chr3L_8091826_8092243,I_chr3L_8098397_8101385,I_chr3L_8098758_8101738,I_chr3L_8100030_8101385 chr3L + chr3L_8100030_8101385 chr3L_8100050_8101385 chr3L_8101386_8101485;chr3L_8099930_8100029 98.34 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 95.83 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 96.43 NA NA NA NA NA NA NA NA NA NA NA 96.67 K alternative_acceptor vap,RI_chrX_15897976_15899352,I_chrX_15897976_15899654,I_chrX_15898011_15899654,I_chrX_15898427_15899017,RI_chrX_15898427_15899654,RI_chrX_15899237_15899352,I_chrX_15899237_15899654 chrX - chrX_15898115_15898360 chrX_15898120_15898360 chrX_15898361_15898368;chrX_15897748_15898114 94.99 NA 94.44 100.00 NA 90.00 94.74 86.84 92.86 NA 92.31 95.45 90.00 92.31 NA 100.00 100.00 100.00 95.24 95.65 90.00 92.31 92.31 NA NA 100.00 NA NA NA 90.91 91.67 NA 100.00 96.15 100.00 88.89 NA NA NA 88.89 NA 95.83 91.67 88.89 NA 100.00 NA 100.00 96.67 NA 100.00 NA NA NA 86.67 NA 100.00 100.00 K alternative_acceptor Sdc,I_chr2R_17286819_17367595,I_chr2R_17324594_17367595 chr2R - chr2R_17367884_17368518;chr2R_17367862_17368518 chr2R_17368045_17368518 chr2R_17368519_17368632;chr2R_17367596_17367861 0.00 NA NA 0.00 NA 0.00 9.52 5.41 4.55 NA NA 0.00 0.00 4.35 NA 2.27 0.00 0.00 0.00 4.35 NA NA NA NA NA 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 NA NA NA NA NA NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 2.08 NA 8.33 NA NA NA 0.00 NA NA 0.00 K intron_retention CG3632,RI_chrX_16195880_16196242 chrX + chrX_16194909_16194971 chrX_16194908_16194909;chrX_16194971_16194972 chrX_16194804_16194908;chrX_16194972_16195557 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 6.25 NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 NA K alternative_acceptor I_chrX_15223901_15223968,HDAC6,I_chrX_15232958_15233665 chrX + chrX_15232056_15232107 chrX_15232056_15232104 chrX_15230648_15232055;chrX_15232108_15232698 100.00 100.00 100.00 100.00 NA 100.00 100.00 92.31 96.00 NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 92.86 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention nimB1 chr2L + chr2L_13963739_13963898 chr2L_13963738_13963739;chr2L_13963898_13963899 chr2L_13963545_13963738;chr2L_13963899_13964456 25.93 16.67 10.53 39.29 25.00 26.09 21.88 20.31 24.36 NA 25.93 21.74 45.45 34.62 30.30 40.74 26.32 17.14 30.77 19.44 29.41 NA 25.00 30.00 NA 36.36 47.37 NA NA 29.41 13.70 27.78 16.67 30.56 26.67 NA 17.65 20.00 12.50 47.06 41.67 20.31 21.43 13.79 26.67 29.63 29.17 22.22 28.26 31.58 30.77 33.33 12.12 22.22 18.92 25.00 15.85 24.14 K intron_retention ssp4,I_chr2R_13409412_13410357,RI_chr2R_13409412_13411004,I_chr2R_13409412_13411328,I_chr2R_13409412_13411588,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13409406_13411588 chr2R_13409405_13409406;chr2R_13411588_13411589 chr2R_13409337_13409405;chr2R_13411589_13411688 50.00 47.83 77.78 53.33 45.83 61.11 77.42 62.96 53.19 NA 43.75 49.02 83.33 40.00 68.97 72.73 66.67 61.29 56.25 64.15 72.22 26.92 50.00 44.44 42.86 35.29 65.00 30.77 50.00 52.63 61.90 29.41 47.37 66.67 36.84 30.00 46.88 65.00 42.11 38.89 NA 57.14 68.42 36.36 18.18 34.62 47.06 69.23 57.50 52.38 50.00 61.11 46.15 33.33 57.14 39.13 63.64 50.00 K intron_retention SPoCk,I_chr3L_22776339_22776519,I_chr3L_22777865_22778359 chr3L + chr3L_22766817_22767837 chr3L_22766816_22766817;chr3L_22767837_22767838 chr3L_22766783_22766816;chr3L_22767838_22768237 42.86 NA 41.67 47.06 NA 38.46 33.33 33.33 46.15 21.43 NA 34.88 NA NA 42.86 50.00 NA NA 46.15 43.75 NA NA 43.75 NA NA 54.55 43.75 NA 60.00 70.00 35.71 NA 30.77 33.33 31.25 69.23 40.00 NA 25.00 21.43 NA 38.46 38.46 NA NA NA NA 63.64 52.38 NA 50.00 NA NA NA 61.11 NA NA NA K jcn_only_AD E2f,CG6353 chr3R - chr3R_17487942_17488440 chr3R_17487942_17488436 chr3R_17486978_17487941;chr3R_17488441_17488464 3.75 4.26 3.51 2.63 0.00 6.00 1.45 2.70 6.90 7.14 0.00 2.67 0.00 2.50 10.20 1.92 0.00 4.55 10.64 0.88 4.88 0.00 5.00 3.66 3.17 0.00 5.41 3.23 3.17 3.92 23.44 6.25 3.45 7.46 3.70 4.44 5.56 5.66 1.47 4.17 2.13 2.17 3.12 4.00 4.55 5.06 1.25 13.89 1.52 5.41 3.75 4.55 2.63 2.41 5.56 4.92 5.19 6.25 K alternative_acceptor Aats-leu chr3L + chr3L_4826043_4826101 chr3L_4826043_4826094 chr3L_4825871_4826042;chr3L_4826102_4827886 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 87.50 NA 100.00 NA NA 93.75 100.00 100.00 NA NA NA 100.00 91.67 NA 90.00 NA NA NA 100.00 100.00 NA 90.00 NA 90.91 NA NA NA NA NA 88.89 100.00 K alternative_donor Rab5,I_chr2L_2361586_2364444,RI_chr2L_2361586_2364627,I_chr2L_2361586_2364794 chr2L - chr2L_2361586_2364640;chr2L_2361586_2364480;chr2L_2361586_2364836;chr2L_2361586_2365060;chr2L_2361586_2364594;chr2L_2361586_2364312;chr2L_2361586_2364889 chr2L_2361586_2364302 chr2L_2361486_2361585;chr2L_2365061_2365065 0.00 0.00 0.00 1.41 0.00 0.00 1.59 1.25 0.89 0.00 0.00 2.82 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.91 0.00 2.86 0.00 3.12 0.00 0.00 4.35 0.00 4.17 0.00 2.22 0.00 0.00 1.32 3.85 4.17 0.00 0.00 0.00 2.86 0.00 1.23 0.00 3.70 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 K intron_retention SWAP,RI_chrX_936466_936762,I_chrX_936466_936835,RI_chrX_936919_937245,RI_chrX_938935_938985,I_chrX_941459_982652 chrX + chrX_936466_936762 chrX_936465_936466;chrX_936762_936763 chrX_936366_936465;chrX_936763_936862 81.82 88.89 NA 75.00 NA NA 76.92 88.24 81.82 NA NA 92.86 NA NA 90.00 100.00 NA NA 88.89 84.62 NA 70.00 70.00 NA 88.89 NA 90.00 NA NA NA 55.00 NA 66.67 81.82 NA NA 87.50 NA NA 76.47 NA 84.21 NA NA NA 69.23 81.82 58.33 94.12 NA 60.00 75.00 NA NA 90.91 NA NA NA K intron_retention lack chr2R + chr2R_13487694_13487766 chr2R_13487693_13487694;chr2R_13487766_13487767 chr2R_13487647_13487693;chr2R_13487767_13489852 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.25 100.00 100.00 100.00 100.00 100.00 100.00 98.92 100.00 100.00 100.00 100.00 98.51 98.11 98.28 100.00 100.00 98.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 96.77 98.15 96.97 100.00 100.00 100.00 98.55 100.00 98.72 100.00 100.00 95.83 100.00 100.00 100.00 98.04 K intron_retention Hil chr2R - chr2R_16502439_16505634 chr2R_16502438_16502439;chr2R_16505634_16505635 chr2R_16502011_16502438;chr2R_16505635_16505711 76.69 56.25 56.25 76.47 60.00 91.67 92.86 85.00 58.82 71.43 43.75 82.35 90.00 63.64 85.71 68.18 50.00 75.00 69.23 85.00 87.50 71.43 78.12 80.00 82.35 66.67 84.62 NA 77.27 57.14 71.43 68.75 92.31 67.86 81.25 94.12 67.44 68.42 87.10 60.00 NA 72.41 NA 64.52 91.67 81.82 58.33 82.35 77.27 76.92 73.91 77.78 87.50 90.00 75.00 73.33 100.00 90.91 K intron_retention CkIIbeta,I_chrX_11689220_11690898 chrX + chrX_11689220_11690898 chrX_11689219_11689220;chrX_11690898_11690899 chrX_11689138_11689219;chrX_11690899_11690998 98.11 97.96 96.83 98.77 97.87 94.23 88.16 99.17 97.67 92.11 95.89 98.82 94.55 98.36 98.31 98.96 97.92 93.10 98.59 97.47 98.36 94.83 100.00 95.45 100.00 100.00 94.64 96.97 98.11 98.31 98.25 100.00 99.36 96.88 98.39 100.00 98.59 96.67 96.72 99.14 98.11 96.12 95.00 98.33 96.88 98.90 91.94 98.96 99.12 98.48 96.77 97.22 97.67 96.55 98.72 98.31 96.97 99.19 K cassette CG32264,RI_chr3L_3769407_3803313 chr3L - chr3L_3718991_3722155 chr3L_3718991_3721536;chr3L_3721567_3722155 chr3L_3721537_3721566 chr3L_3718638_3718990;chr3L_3722156_3722522 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor RI_chrX_6482284_6482336,Pat1,I_chrX_6489999_6490050,APC7 chrX + chrX_6489994_6490050 chrX_6489999_6490050 chrX_6490051_6490150;chrX_6489899_6489993 48.48 55.56 52.00 50.85 68.18 60.00 41.82 60.27 46.58 38.10 21.43 40.35 47.50 57.14 60.87 42.59 48.39 34.62 54.76 50.00 29.41 19.51 60.00 45.45 63.64 48.28 57.78 45.16 46.43 40.54 39.47 44.00 37.08 49.18 32.14 51.61 60.00 50.00 48.00 34.92 53.57 49.25 48.48 55.26 30.51 45.71 58.82 34.17 50.77 42.42 61.29 50.00 54.55 36.84 56.76 52.17 50.00 42.28 K intron_retention CG4928,RI_chrX_16827793_16828070 chrX + chrX_16828477_16828900 chrX_16828476_16828477;chrX_16828900_16828901 chrX_16828071_16828476;chrX_16828901_16829754 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 14.81 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA NA NA NA K alternative_acceptor CG5514,RI_chr3R_23768206_23768306,Gp93 chr3R + chr3R_23767856_23768156;chr3R_23767856_23768309 chr3R_23767856_23768306 chr3R_23765429_23767855;chr3R_23768310_23768406 10.00 8.89 6.82 12.77 6.90 7.50 7.69 13.64 7.78 12.50 3.12 9.59 14.29 11.43 11.90 12.50 8.00 7.14 7.14 12.09 7.14 6.90 7.55 12.07 9.09 11.11 7.69 5.71 6.12 2.78 14.58 13.56 10.14 11.29 12.77 11.90 12.07 6.25 9.52 8.89 11.76 10.00 12.90 5.26 8.60 11.11 7.23 10.53 12.86 8.25 10.00 13.33 4.84 14.81 10.00 12.28 11.83 13.64 K alternative_donor CG2065 chr2R + chr2R_3551440_3551537 chr2R_3551469_3551537 chr2R_3551538_3551801;chr2R_3551288_3551439 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.27 3.45 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 2.20 1.82 0.00 0.00 0.00 2.33 9.09 0.00 2.78 2.50 5.88 1.82 0.00 0.00 0.00 2.08 2.38 0.00 3.45 1.82 4.76 0.00 4.26 0.00 0.00 1.54 2.99 0.00 2.99 0.00 0.00 0.00 0.00 0.00 0.00 1.67 K cassette CG6838,I_chr3L_22709306_22709668 chr3L - chr3L_22709303_22709668 chr3L_22709303_22709406;chr3L_22709515_22709668 chr3L_22709407_22709514 chr3L_22709206_22709302;chr3L_22709669_22709768 95.83 90.24 97.37 80.00 96.55 92.11 90.91 98.00 95.83 91.43 85.19 98.15 96.00 96.43 94.87 100.00 96.15 96.88 100.00 96.00 90.91 84.00 88.52 97.67 97.14 81.82 97.22 91.49 89.58 88.57 87.88 96.67 94.92 93.33 96.97 100.00 94.03 93.02 96.55 93.65 96.15 95.38 100.00 97.67 97.78 97.50 100.00 94.00 94.74 94.00 93.18 95.00 97.50 96.15 95.00 93.75 95.83 98.25 K alternative_donor I_chr3R_23771063_23772599,CG4951,RI_chr3R_23778808_23778861 chr3R - chr3R_23778808_23778865 chr3R_23778808_23778861 chr3R_23778715_23778807;chr3R_23778866_23778961 1.02 4.41 0.00 0.00 0.00 0.00 0.00 2.94 1.18 0.00 0.00 1.03 2.86 0.00 1.54 2.22 0.00 0.00 0.00 0.89 0.00 0.00 2.63 1.18 0.00 4.44 8.33 2.86 1.59 0.00 4.08 1.02 1.54 2.38 0.00 1.92 0.00 0.00 0.98 2.08 2.25 2.83 2.22 4.65 0.00 0.86 0.00 0.72 2.44 0.00 0.00 2.70 0.00 0.00 1.67 1.39 1.69 1.77 K intron_retention CrebB-17A,I_chrX_18261213_18269281,I_chrX_18265640_18266060,I_chrX_18265982_18266063 chrX + chrX_18267489_18269281 chrX_18267488_18267489;chrX_18269281_18269282 chrX_18267320_18267488;chrX_18269282_18269381 13.04 0.00 9.09 15.62 17.65 10.34 25.00 13.04 3.80 20.00 27.78 8.99 16.67 NA 13.16 19.35 12.50 13.51 7.41 9.46 26.92 17.74 8.70 3.57 8.57 19.35 21.05 56.00 23.26 6.67 9.76 23.81 9.52 13.89 13.79 13.04 5.68 9.62 11.84 13.21 15.38 7.59 15.38 17.65 19.05 16.36 9.52 18.00 10.39 12.12 13.04 5.26 5.00 17.07 20.00 5.77 3.57 6.67 K jcn_only_AA RpL15 chr3LHet + chr3LHet_2397820_2398143;chr3LHet_2397820_2398127 chr3LHet_2397820_2398049 chr3LHet_2397802_2397819;chr3LHet_2398144_2398454 3.25 NA 0.00 6.08 NA 6.45 NA 2.66 3.70 20.00 4.17 12.50 NA NA 0.63 26.09 2.00 3.03 3.48 4.00 NA 6.63 NA NA NA 2.53 NA 4.72 7.59 1.00 16.54 4.31 1.68 2.80 2.13 2.78 NA NA NA 2.61 7.98 4.94 2.74 2.58 2.15 4.81 NA 5.85 5.42 NA NA NA 1.19 NA 0.97 NA 0.00 2.24 K cassette CG15279,F_chr2L_14847018_14848004,F_chr2L_14848345_14848673,I_chr2L_14849367_14851281 chr2L - chr2L_14847058_14848673 chr2L_14847058_14848004;chr2L_14848255_14848673 chr2L_14848005_14848254 chr2L_14846796_14847057;chr2L_14848674_14848687 35.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 35.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG15098,I_chr2R_14721883_14721980 chr2R - chr2R_14721883_14721980 chr2R_14721882_14721883;chr2R_14721980_14721981 chr2R_14721834_14721882;chr2R_14721981_14722049 99.03 99.35 98.60 99.53 98.82 98.35 98.98 98.21 99.24 97.01 99.18 99.25 99.22 100.00 99.32 98.86 99.00 99.18 98.37 99.29 97.73 97.85 99.41 98.91 100.00 99.22 98.64 99.26 99.21 100.00 94.70 95.45 99.31 98.95 99.03 96.91 98.95 99.38 98.76 96.97 100.00 99.62 98.95 98.43 98.57 98.57 99.57 96.97 100.00 99.18 98.83 99.17 100.00 99.15 98.52 100.00 99.62 98.51 K alternative_donor CG15072,RI_chr2R_14576128_14579545,I_chr2R_14589693_14590032 chr2R + chr2R_14576017_14579545;chr2R_14576049_14579545;chr2R_14576247_14579545;chr2R_14576056_14579545;chr2R_14576154_14579545 chr2R_14575874_14579545 chr2R_14579546_14579571;chr2R_14575805_14575873 23.53 50.00 20.00 7.69 33.33 16.67 17.65 11.11 24.00 50.00 44.44 40.00 29.41 33.33 12.50 5.56 44.44 14.29 20.00 30.00 25.00 14.29 22.22 20.00 50.00 0.00 42.86 33.33 14.29 14.29 33.33 50.00 9.09 13.33 50.00 25.00 37.50 0.00 20.00 23.53 0.00 7.14 11.11 18.18 100.00 25.00 33.33 11.11 25.00 66.67 33.33 20.00 25.00 50.00 0.00 100.00 0.00 11.11 K alternative_acceptor WRNexo chr3R - chr3R_14191699_14191757 chr3R_14191702_14191757 chr3R_14191758_14191788;chr3R_14191633_14191698 95.24 94.12 91.67 93.75 90.00 100.00 95.24 95.00 97.56 100.00 88.89 95.83 93.75 92.86 100.00 96.55 100.00 100.00 92.31 97.44 91.67 92.86 95.83 90.91 NA 100.00 90.91 NA NA 96.00 100.00 95.83 95.35 95.24 90.91 92.31 95.83 100.00 NA 95.65 95.00 84.21 92.31 92.86 100.00 89.66 87.88 96.97 96.88 100.00 94.74 94.12 92.00 92.86 94.12 95.24 100.00 98.36 K jcn_only_AD endos,I_chr3L_14024099_14024488,I_chr3L_14024103_14024158,I_chr3L_14024103_14024546,noncoding_12505,I_chr3L_14024496_14024546 chr3L - chr3L_14024103_14024546;chr3L_14024103_14024158;chr3L_14024103_14024407 chr3L_14024103_14024488 chr3L_14024003_14024102;chr3L_14024547_14024588 96.15 96.05 95.95 97.38 94.70 98.50 94.35 98.73 96.15 93.89 97.87 99.07 97.06 97.86 98.60 95.27 98.01 97.44 97.78 96.62 99.35 88.98 87.23 90.81 93.42 100.00 98.40 94.21 96.30 95.38 97.69 96.41 87.44 96.79 96.33 97.96 93.18 88.68 92.57 95.64 96.35 96.07 96.40 97.54 94.83 94.87 95.12 97.14 97.20 90.24 95.90 97.89 96.00 92.52 99.43 89.93 93.63 94.43 K jcn_only_AD CG12079,CG14964 chr3L - chr3L_3159216_3159273 chr3L_3159216_3159269 chr3L_3158485_3159215;chr3L_3159274_3159348 0.00 0.82 0.00 0.00 0.00 0.00 0.70 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.32 0.00 0.00 0.00 0.39 0.77 1.00 0.00 0.00 1.50 0.79 1.42 0.00 0.00 1.01 0.85 0.00 0.69 1.20 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.49 0.86 0.00 0.90 0.00 0.84 0.89 0.00 0.87 0.00 1.46 0.32 0.00 K intron_retention RpL19,I_chr2R_20858841_20859293 chr2R - chr2R_20856748_20856991 chr2R_20856747_20856748;chr2R_20856991_20856992 chr2R_20856641_20856747;chr2R_20856992_20857186 0.40 0.36 0.14 0.27 0.19 0.19 0.56 0.12 0.20 0.52 0.24 0.15 0.07 0.15 0.21 0.16 0.19 0.09 0.14 0.16 0.10 1.19 0.52 0.34 1.12 0.56 2.75 2.37 1.34 1.05 0.47 0.78 0.48 0.21 0.65 6.57 0.25 0.55 0.83 0.68 2.34 0.16 0.26 0.83 0.11 1.46 0.26 0.78 0.39 0.85 0.89 0.53 0.40 2.88 0.11 0.55 0.26 0.67 K jcn_only_AD CG17549,R_chr2L_19388305_19388473,RI_chr2L_19388570_19389427,I_chr2L_19388570_19389922 chr2L - chr2L_19388570_19389427;chr2L_19388570_19389764;chr2L_19388570_19389926 chr2L_19388570_19389935 chr2L_19388474_19388569;chr2L_19389936_19390022 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4833234_4834454 chrX_4833234_4834343 chrX_4833206_4833233;chrX_4834455_4834880 6.29 NA NA 0.00 NA NA 9.68 4.00 6.12 NA NA 0.00 NA 0.00 NA 6.67 10.53 NA 0.00 6.45 NA 26.67 NA NA NA NA NA NA NA 11.11 NA NA 6.06 8.33 NA NA NA NA NA NA NA 10.71 NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 7.69 NA NA NA K intron_retention Atpalpha,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16792336_16796604 chr3R_16792335_16792336;chr3R_16796604_16796605 chr3R_16792236_16792335;chr3R_16796605_16796699 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA 100.00 100.00 NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD BtbVII,I_chr3L_3150858_3150927,I_chr3L_3151185_3151263 chr3L + chr3L_3150843_3150927 chr3L_3150858_3150927 chr3L_3150928_3151027;chr3L_3150758_3150842 5.19 5.19 11.36 6.31 4.00 9.84 9.18 3.53 4.37 3.85 8.57 5.08 3.45 10.00 26.73 12.07 6.98 9.17 4.00 6.64 8.05 2.99 6.13 3.95 4.67 2.53 7.69 5.04 5.15 5.32 7.06 7.14 4.35 5.56 5.00 1.71 3.52 1.71 7.59 3.70 4.55 6.25 1.30 5.11 4.31 9.09 1.52 6.19 7.25 5.98 4.49 7.84 5.98 1.11 7.21 9.32 4.46 3.45 K intron_retention CG11009,I_chr3L_12844823_12845526,I_chr3L_12845441_12845526 chr3L + chr3L_12845622_12845715 chr3L_12845621_12845622;chr3L_12845715_12845716 chr3L_12845530_12845621;chr3L_12845716_12845816 6.45 3.45 5.71 8.00 0.00 10.00 NA 15.38 15.69 NA 8.70 11.43 14.29 8.33 15.79 6.25 9.09 0.00 8.33 7.27 0.00 2.99 8.33 9.52 4.35 0.00 9.09 8.70 0.00 4.26 6.38 2.60 6.73 9.43 2.86 0.00 5.41 0.00 0.00 3.70 5.63 11.76 10.00 13.64 0.00 4.94 8.47 9.76 11.11 8.05 5.26 6.06 12.50 6.45 6.25 0.00 7.14 6.45 K intron_retention CG4091,I_chr2R_19588114_19588638,I_chr2R_19588393_19588638,I_chr2R_19588393_19588935,noncoding_8958,RI_chr2R_19589178_19589633 chr2R - chr2R_19588114_19589633 chr2R_19588113_19588114;chr2R_19589633_19589634 chr2R_19588014_19588113;chr2R_19589634_19589733 3.60 5.88 4.48 0.00 0.00 0.00 7.69 3.10 6.86 NA 8.11 6.25 3.70 4.00 7.58 5.56 0.00 11.76 0.00 5.61 5.77 3.03 3.51 5.88 5.26 4.00 4.84 10.00 15.38 2.70 6.33 3.33 0.00 2.33 0.00 7.14 1.92 0.00 3.12 2.90 0.00 4.04 0.00 0.00 0.00 0.00 7.32 12.50 2.17 6.98 1.43 0.00 0.00 8.33 4.35 8.82 0.00 0.00 K alternative_donor Paip2,I_chr3R_8809774_8809832 chr3R + chr3R_8809770_8809832 chr3R_8809774_8809832 chr3R_8809833_8809932;chr3R_8809674_8809769 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.99 1.83 0.00 0.00 1.10 1.14 0.00 0.58 0.00 0.00 0.00 0.00 2.63 10.42 3.77 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.57 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor d4 chr2R + chr2R_1182569_1182620;chr2R_1182563_1182620;chr2R_1182566_1182620 chr2R_1182573_1182620 chr2R_1182621_1183461;chr2R_1182302_1182562 1.82 0.00 0.00 1.49 0.00 2.63 1.64 1.85 1.94 0.00 2.56 1.96 3.33 3.12 2.70 1.82 0.00 0.00 3.23 1.92 0.00 0.00 2.13 0.00 3.12 0.00 1.89 2.56 1.92 2.50 3.45 2.27 1.67 2.00 0.00 0.00 1.79 0.00 0.00 3.08 2.44 2.86 3.57 0.00 1.72 2.17 0.00 1.96 1.67 1.75 0.00 3.57 1.82 0.00 2.50 2.22 1.18 1.35 K alternative_donor CycT,I_chr3L_17548631_17550687 chr3L - chr3L_17548631_17549473 chr3L_17548631_17549242 chr3L_17548531_17548630;chr3L_17549474_17549519 24.07 23.73 22.73 50.00 25.00 29.41 24.07 24.73 24.11 23.94 41.18 26.92 19.61 30.19 28.07 17.31 30.77 34.88 34.78 23.57 37.84 22.45 21.74 21.92 24.62 38.46 32.22 38.38 29.23 25.30 35.48 14.81 26.58 22.22 18.33 21.13 17.88 19.35 16.41 24.59 22.22 23.73 31.71 19.18 19.23 30.00 25.00 31.08 22.64 21.74 22.09 20.00 21.21 13.51 31.25 17.65 20.59 30.56 K intron_retention CG9139,scf,CG9149 chr3L + chr3L_1296180_1296264 chr3L_1296179_1296180;chr3L_1296264_1296265 chr3L_1295941_1296179;chr3L_1296265_1296468 0.00 2.33 0.00 0.00 8.33 6.06 3.92 8.00 4.69 0.00 0.00 6.90 7.14 3.70 0.00 0.00 0.00 0.00 3.57 1.67 0.00 0.00 9.26 0.00 0.00 0.00 1.96 3.33 0.00 0.00 0.00 0.00 4.88 2.27 4.35 0.00 4.55 0.00 8.51 5.26 0.00 0.00 0.00 0.00 0.00 0.00 4.17 4.88 2.90 10.81 6.56 0.00 0.00 0.00 0.00 0.00 6.45 0.00 K jcn_only_AA Vap-33-1 chrX + chrX_3843406_3843513;chrX_3843406_3845447 chrX_3843406_3843520 chrX_3843337_3843405 0.00 0.00 0.00 1.10 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 1.22 0.00 0.00 0.00 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.81 K jcn_only_AD CG6178 chr3R + chr3R_19978326_19978811;chr3R_19978271_19978811 chr3R_19978381_19978811 chr3R_19978812_19979489;chr3R_19978101_19978270 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4119 chrX + chrX_5560351_5560409 chrX_5560350_5560351;chrX_5560409_5560410 chrX_5560108_5560350;chrX_5560410_5560501 91.67 90.00 88.24 94.44 94.12 93.75 90.00 94.74 97.22 91.67 94.44 96.55 93.75 92.31 89.47 94.12 92.86 88.89 87.50 96.00 86.67 78.57 95.65 79.17 84.62 95.45 96.15 83.33 97.22 96.67 93.33 75.00 88.89 88.46 100.00 96.67 78.72 85.71 81.48 87.10 95.24 86.49 93.75 93.33 77.27 91.30 90.00 94.29 96.43 75.00 87.50 87.50 86.67 76.47 95.24 94.74 87.50 94.74 N jcn_only_AA Moca-cyp chr3R + chr3R_24167182_24167348;chr3R_24167182_24167249;chr3R_24167182_24167906;chr3R_24167182_24167260 chr3R_24167182_24167243 chr3R_24167094_24167181;chr3R_24167907_24167936 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 11.29 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 K alternative_acceptor skpA chrX + chrX_550638_551136 chrX_550638_551131 chrX_550585_550637;chrX_551137_551937 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 93.33 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention vimar,CG30156 chr2R - chr2R_2869191_2869247 chr2R_2869190_2869191;chr2R_2869247_2869248 chr2R_2869159_2869190;chr2R_2869248_2869291 7.92 0.00 0.00 NA NA NA 14.29 0.00 11.11 NA NA 4.76 NA NA 22.22 17.39 14.29 NA 6.25 11.76 NA NA 12.50 NA NA NA 0.00 NA NA NA NA NA NA 0.00 7.14 NA NA NA 10.00 3.85 NA 11.11 NA NA NA 0.00 8.70 NA 17.65 10.53 NA NA NA 6.25 5.00 9.52 0.00 NA K alternative_donor crol,I_chr2L_11799403_11802904 chr2L - chr2L_11800323_11802904;chr2L_11800323_11802370;chr2L_11800323_11802343 chr2L_11800323_11802286 chr2L_11800155_11800322;chr2L_11802905_11803004 46.37 48.06 42.15 28.31 41.30 45.50 46.39 53.33 45.97 62.26 48.63 46.37 49.74 43.84 41.54 54.23 51.12 34.86 44.90 44.96 51.55 32.19 45.38 44.78 43.59 41.78 44.47 29.98 54.46 47.06 46.38 52.20 49.91 50.00 41.94 42.23 44.60 41.19 45.93 54.09 53.23 44.02 49.45 50.15 43.97 49.17 46.12 55.70 45.61 49.42 50.64 45.25 53.19 48.00 41.50 48.28 51.35 54.81 K jcn_only_AA csul chr2R + chr2R_12152628_12152704;chr2R_12152628_12152686 chr2R_12152628_12152671 chr2R_12152244_12152627;chr2R_12152705_12153131 43.14 47.37 37.93 43.62 41.07 42.11 53.33 40.45 39.71 53.85 43.24 45.83 50.00 40.54 39.39 51.92 51.35 30.43 47.54 39.25 40.43 45.90 25.71 36.67 61.76 56.14 22.39 34.12 50.82 32.00 49.09 42.86 33.33 47.06 38.89 36.54 36.08 40.91 52.87 44.25 54.32 44.04 54.55 49.15 43.48 48.33 35.29 43.14 52.08 39.53 46.58 41.03 35.09 48.15 45.61 35.00 39.74 40.00 K cassette Nrx-IV chr3L + chr3L_12142009_12145276;chr3L_12142009_12144919 chr3L_12142009_12144310;chr3L_12144508_12145276,chr3L_12144508_12144919 chr3L_12144311_12144507 chr3L_12141892_12142008;chr3L_12145277_12145418 38.46 34.21 35.14 20.31 30.30 27.91 29.63 43.18 28.72 36.00 26.67 48.98 50.00 41.94 30.19 29.79 38.46 44.00 21.62 38.55 22.58 35.00 43.02 53.49 51.52 33.33 44.64 37.04 22.22 50.00 61.22 63.64 71.88 30.77 51.72 86.67 44.59 43.48 38.89 49.09 28.57 31.88 33.33 43.10 35.29 50.00 41.18 57.78 36.49 33.33 46.30 37.84 34.62 66.67 31.91 47.37 25.00 66.67 K intron_retention CG14220 chrX - chrX_19495378_19495436 chrX_19495377_19495378;chrX_19495436_19495437 chrX_19494672_19495377;chrX_19495437_19495545 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.06 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Mpk2,I_chr3R_19977468_19977530,F_chr3R_19985127_19985197 chr3R - chr3R_19977468_19977567 chr3R_19977468_19977530 chr3R_19977368_19977467;chr3R_19977568_19977630 2.78 0.00 14.29 6.67 NA NA 4.76 0.00 3.12 NA 0.00 0.00 0.00 NA 5.00 2.86 5.56 0.00 NA 2.38 6.67 3.45 0.00 0.00 NA 0.00 3.70 6.67 19.05 5.26 3.45 4.55 0.00 0.00 0.00 NA 0.00 NA 0.00 2.70 4.55 5.88 NA 0.00 0.00 5.00 0.00 3.85 8.82 NA 3.57 0.00 0.00 NA 4.35 0.00 0.00 3.12 K alternative_donor RhoGEF3,I_chr3L_298140_298220 chr3L + chr3L_301105_301162 chr3L_301109_301162 chr3L_301163_301681;chr3L_300901_301104 100.00 100.00 96.77 100.00 95.24 96.88 100.00 97.62 100.00 94.74 95.00 100.00 100.00 100.00 96.67 100.00 100.00 95.65 100.00 98.90 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 95.45 100.00 96.15 100.00 100.00 96.43 97.14 98.31 100.00 98.36 100.00 100.00 94.44 100.00 95.65 97.83 100.00 96.55 97.87 96.77 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention TepIV,EI_chr2L_19548696_19549582 chr2L + chr2L_19553916_19553975 chr2L_19553915_19553916;chr2L_19553975_19553976 chr2L_19553362_19553915;chr2L_19553976_19556092 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.61 1.17 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 K intron_retention CG3408,I_chr3L_9501587_9501663,RI_chr3L_9501725_9502450,I_chr3L_9504402_9504516 chr3L - chr3L_9501725_9502438 chr3L_9501724_9501725;chr3L_9502438_9502439 chr3L_9501665_9501724;chr3L_9502439_9502693 0.00 NA 0.00 0.00 NA NA NA 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 5.56 0.00 0.00 NA 0.00 0.00 NA 2.94 0.00 NA NA NA NA NA NA 0.00 NA 0.00 K alternative_donor sd,noncoding_23930,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15706472_15707881;chrX_15706564_15707881 chrX_15706305_15707881 chrX_15707882_15708324;chrX_15706259_15706304 0.00 0.00 14.29 0.00 0.00 10.00 14.29 0.00 0.00 NA 0.00 9.52 NA 7.69 0.00 NA 14.29 0.00 0.00 3.23 0.00 0.00 9.09 10.00 NA 0.00 10.00 0.00 0.00 0.00 7.14 0.00 6.25 7.14 0.00 NA 0.00 0.00 0.00 6.25 0.00 0.00 16.67 33.33 0.00 14.29 0.00 3.70 5.00 0.00 12.50 0.00 NA 0.00 0.00 20.00 0.00 0.00 K alternative_acceptor F_chr2L_5045484_5046146,His3_3A chr2L + chr2L_5055153_5055251 chr2L_5055153_5055206 chr2L_5055058_5055152;chr2L_5055252_5055540 100.00 100.00 100.00 100.00 98.86 100.00 99.42 100.00 99.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.33 100.00 100.00 99.16 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.35 100.00 100.00 100.00 98.86 100.00 99.32 100.00 99.57 100.00 100.00 99.34 99.21 100.00 98.68 100.00 99.12 98.94 100.00 100.00 100.00 100.00 100.00 100.00 98.96 K intron_retention CG13367 chrX + chrX_539947_540022 chrX_539946_539947;chrX_540022_540023 chrX_538794_539946;chrX_540023_540419 0.00 0.00 NA 6.25 NA NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA 0.00 6.25 0.00 NA 4.17 0.00 NA NA 0.00 6.67 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 5.56 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 K intron_retention Dscam,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3250700_3255892 chr2R_3250699_3250700;chr2R_3255892_3255893 chr2R_3250653_3250699;chr2R_3255893_3255920 75.00 NA NA 90.91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Arp87C chr3R + chr3R_8517592_8518364 chr3R_8517591_8517592;chr3R_8518364_8518365 chr3R_8517455_8517591;chr3R_8518365_8518429 0.00 2.50 0.00 0.00 0.00 1.18 0.00 0.93 1.77 0.00 0.00 0.00 1.32 2.41 1.87 1.74 0.00 0.00 0.00 0.00 1.16 3.53 0.00 0.00 0.00 2.70 2.33 0.00 0.00 0.00 2.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 1.06 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 1.01 2.22 0.00 0.00 K intron_retention PPP4R2r chrX + chrX_10373003_10373505 chrX_10373002_10373003;chrX_10373505_10373506 chrX_10372866_10373002;chrX_10373506_10373750 19.08 20.00 13.04 13.89 NA 13.33 24.14 10.00 18.18 NA 15.38 12.12 25.00 9.09 33.33 15.52 28.57 29.41 19.23 22.50 18.18 0.00 24.00 18.75 NA 5.56 33.33 NA NA NA 24.14 NA 20.00 20.93 11.76 NA 6.67 NA NA 30.00 15.38 18.92 30.77 50.00 NA 18.18 33.33 29.41 14.81 NA 20.83 NA NA NA 17.24 14.29 30.77 33.33 K jcn_only_AA CG31304 chr3R - chr3R_10926146_10926210 chr3R_10926149_10926210 chr3R_10926211_10926279;chr3R_10925968_10926145 42.44 22.22 45.83 NA NA NA 45.71 52.17 36.59 NA NA 42.86 NA NA 50.00 35.00 NA NA NA 46.43 50.00 51.22 42.62 41.67 26.09 NA 52.78 NA 50.00 33.33 NA NA 42.50 42.50 NA 40.91 42.37 33.33 43.48 42.22 NA 36.84 45.45 43.84 NA 34.78 NA NA 31.82 38.10 38.46 35.29 25.00 NA 60.71 42.86 40.00 NA K intron_retention CG9143 chr2R - chr2R_16164844_16164901 chr2R_16164843_16164844;chr2R_16164901_16164902 chr2R_16164724_16164843;chr2R_16164902_16166432 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor pelo,I_chr2L_9707821_9708144,I_chr2L_9707891_9708144,I_chr2L_9708081_9708144 chr2L + chr2L_9707891_9708144;chr2L_9708081_9708144;chr2L_9706747_9708144 chr2L_9707821_9708144 chr2L_9708145_9708244;chr2L_9706647_9706746 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 1.09 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 2.56 0.00 1.37 0.00 0.00 1.59 1.54 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 1.69 0.00 0.00 0.00 1.23 0.00 1.30 0.00 0.00 0.00 0.00 0.00 1.15 1.27 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17912,I_chr2L_16749189_16749266 chr2L + chr2L_16743571_16743759 chr2L_16743570_16743571;chr2L_16743759_16743760 chr2L_16743305_16743570;chr2L_16743760_16744067 1.11 1.85 0.00 3.15 0.00 1.39 0.00 1.99 3.91 0.00 3.64 1.73 0.00 0.00 0.00 0.76 0.00 2.67 4.00 1.91 3.45 0.00 0.00 1.15 0.00 1.25 5.56 6.02 0.00 3.28 1.80 0.00 0.00 5.30 0.00 0.00 0.00 0.00 2.78 1.83 0.00 1.35 0.00 0.00 0.00 1.96 0.00 2.90 2.47 2.60 1.11 0.00 0.00 2.44 3.51 1.59 0.00 0.00 N jcn_only_AD CG1494 chrX + chrX_21159081_21159147;chrX_21158242_21159147 chrX_21159059_21159147 chrX_21159148_21159527;chrX_21157788_21158241 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3563,R_chr3R_10568322_10613785,I_chr3R_10615218_10615284,F_chr3R_10620137_10620250 chr3R + chr3R_10575339_10575927 chr3R_10575338_10575339;chr3R_10575927_10575928 chr3R_10575323_10575338;chr3R_10575928_10575995 60.00 77.78 52.94 52.00 NA 57.14 60.87 79.31 53.33 NA NA 54.05 50.00 45.45 66.67 61.11 70.00 77.78 71.43 35.14 66.67 73.68 55.00 60.00 NA 66.67 NA 87.50 63.64 63.64 60.00 NA 36.36 57.14 53.33 75.00 NA NA NA 59.09 NA 59.09 46.15 66.67 NA 60.00 NA 69.23 58.82 NA 47.37 60.00 NA NA 38.89 NA NA NA K intron_retention Den1 chr2R + chr2R_8225396_8225456 chr2R_8225395_8225396;chr2R_8225456_8225457 chr2R_8225307_8225395;chr2R_8225457_8225546 100.00 100.00 100.00 96.30 NA NA 95.00 100.00 95.83 NA NA 100.00 100.00 100.00 100.00 95.24 87.50 100.00 100.00 95.45 100.00 90.00 93.33 100.00 100.00 92.86 100.00 NA 91.67 88.89 97.78 88.89 100.00 94.44 91.67 100.00 NA NA 91.67 94.12 100.00 100.00 100.00 100.00 90.00 94.12 90.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 82.61 K intron_retention musashi,C_chr3R_21387506_21389801 chr3R + chr3R_21421325_21425228 chr3R_21421324_21421325;chr3R_21425228_21425229 chr3R_21421040_21421324;chr3R_21425229_21425932 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 1.77 0.00 0.00 1.15 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Sdc,I_chr2R_17286819_17367595,I_chr2R_17324594_17367595 chr2R - chr2R_17368045_17368518;chr2R_17367862_17368518 chr2R_17367884_17368518 chr2R_17368519_17368632;chr2R_17367596_17367861 4.65 NA NA 9.68 NA 0.00 9.52 2.70 4.55 NA NA 7.69 0.00 8.70 NA 4.55 0.00 7.69 4.76 4.35 NA NA NA NA NA 11.76 NA NA 6.67 NA 3.12 NA NA 7.32 NA NA NA NA NA NA 7.14 3.45 0.00 NA NA 0.00 NA 0.00 8.33 NA 8.33 NA NA NA 5.56 NA NA 2.94 K jcn_only_AA rdgA chrX + chrX_8910362_8911891;chrX_8910362_8911894 chrX_8910362_8911876 chrX_8910158_8910361;chrX_8911895_8912021 4.17 NA NA NA NA 10.00 NA NA 4.00 NA NA 4.35 NA NA NA NA NA NA NA 3.33 NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 6.90 NA NA 3.57 NA 5.56 NA NA 7.69 NA NA NA NA NA NA 3.57 NA NA NA NA NA 6.67 NA NA NA K cassette Roc2 chr2R - chr2R_7565960_7566774 chr2R_7565960_7566302;chr2R_7566399_7566774 chr2R_7566303_7566398 chr2R_7565711_7565959;chr2R_7566775_7566837 0.00 NA NA 7.14 NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Spn5,CG6687 chr3R - chr3R_11030270_11032070 chr3R_11030269_11030270;chr3R_11032070_11032071 chr3R_11029272_11030269;chr3R_11032071_11032377 0.00 0.00 0.00 0.00 0.00 0.00 3.12 4.00 2.38 3.57 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 5.00 2.65 4.17 4.21 0.00 0.00 2.27 0.00 0.00 1.40 4.49 0.00 4.62 2.82 2.50 0.00 0.00 0.00 0.00 0.00 3.08 1.89 0.00 1.72 0.00 0.00 3.30 4.88 0.00 2.70 2.65 2.41 1.15 4.08 0.00 0.00 0.00 0.00 1.53 0.58 K intron_retention Pp1-87B chr3R - chr3R_8250239_8250332 chr3R_8250238_8250239;chr3R_8250332_8250333 chr3R_8249673_8250238;chr3R_8250333_8251639 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.50 4.76 9.91 0.00 0.00 0.72 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 1.12 0.00 1.11 0.00 0.00 0.62 0.68 0.00 0.00 0.53 0.52 1.08 0.00 0.00 1.31 0.00 0.51 0.00 0.60 K alternative_acceptor csul chr2R + chr2R_12152628_12152704;chr2R_12152628_12152686 chr2R_12152628_12152671 chr2R_12152244_12152627;chr2R_12152705_12153131 34.78 36.36 30.00 35.29 33.33 33.33 46.67 33.33 32.69 44.44 40.00 38.24 41.18 37.50 32.00 42.86 42.86 24.00 36.36 30.95 33.33 37.50 20.69 32.00 54.55 45.00 15.38 23.33 42.86 24.00 40.00 37.50 25.00 40.00 30.43 26.32 28.95 30.43 40.74 34.29 46.15 34.21 42.86 40.00 34.78 35.00 28.57 33.33 44.12 31.58 37.50 35.71 27.27 40.00 35.00 27.27 31.03 31.25 K jcn_only_AD CG18619,I_chr2L_10264634_10264770,RI_chr2L_10265562_10265628 chr2L + chr2L_10264886_10264946 chr2L_10264890_10264946 chr2L_10264947_10265012;chr2L_10264822_10264885 57.14 53.10 61.32 49.77 51.72 57.84 60.42 55.82 53.11 62.37 56.96 57.87 70.07 55.37 57.14 57.51 52.56 65.09 51.01 64.96 55.56 70.13 62.07 57.72 56.00 52.80 55.81 62.79 64.53 48.96 57.45 60.56 55.05 57.79 57.66 64.71 65.91 56.84 58.02 55.04 52.69 55.67 57.14 59.82 54.61 55.93 56.94 65.44 56.92 59.09 54.33 60.19 57.61 52.29 60.87 52.15 50.34 66.36 K alternative_acceptor CG13585,RI_chr2R_20420065_20420105,E_chr2R_20420167_20420418 chr2R + chr2R_20420065_20420120 chr2R_20420065_20420105 chr2R_20419965_20420064;chr2R_20420121_20420166 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 K intron_retention sar1,I_chr3R_18184656_18185246,I_chr3R_18185015_18185246,I_chr3R_18185148_18185246 chr3R + chr3R_18184351_18185246 chr3R_18184350_18184351;chr3R_18185246_18185247 chr3R_18184285_18184350;chr3R_18185247_18185346 0.00 0.00 0.00 0.26 0.00 0.00 1.15 0.00 0.60 0.00 2.11 0.44 1.75 0.00 0.00 0.00 0.52 0.41 0.00 0.00 1.69 0.83 0.90 0.00 1.15 0.00 0.66 1.80 0.00 0.00 0.68 0.46 0.00 0.53 0.00 0.00 0.66 0.00 0.68 0.00 0.00 0.20 0.00 0.00 0.00 0.46 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 K alternative_donor Mi-2 chr3L - chr3L_19881715_19903142 chr3L_19881715_19881800 chr3L_19881638_19881714;chr3L_19903143_19903321 44.93 47.95 43.84 44.14 58.70 41.79 47.92 37.60 53.06 54.72 51.02 45.11 54.90 37.33 42.67 34.78 47.37 41.54 41.43 45.27 45.28 61.42 47.50 61.04 44.93 30.59 52.94 49.06 39.60 36.70 36.25 44.44 38.93 44.92 41.03 43.82 64.49 57.81 56.86 38.41 43.64 45.32 42.62 41.75 57.41 35.11 51.56 33.09 40.54 70.18 46.23 49.09 50.82 49.02 38.64 44.44 52.24 41.58 K intron_retention osa,R_chr3R_13525411_13533475,I_chr3R_13525426_13525859 chr3R - chr3R_13525426_13533492 chr3R_13525425_13525426;chr3R_13533492_13533493 chr3R_13525326_13525425;chr3R_13533493_13533575 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.43 0.00 0.00 1.75 0.00 0.00 2.02 1.90 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9776 chr3R - chr3R_153800_153858 chr3R_153799_153800;chr3R_153858_153859 chr3R_153773_153799;chr3R_153859_154129 91.88 NA NA 95.83 NA NA 73.33 90.91 100.00 NA NA 100.00 NA NA NA 92.86 NA NA NA 88.89 NA NA NA NA NA NA NA NA NA NA 77.78 NA NA 88.89 NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA K jcn_only_AD G-oalpha47A chr2R + chr2R_6325600_6326879 chr2R_6325612_6326879 chr2R_6326880_6326950;chr2R_6325501_6325599 95.24 NA NA NA NA NA NA NA 92.86 NA NA 90.00 NA NA NA 90.62 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA 95.24 NA NA NA NA NA 96.30 NA NA NA 100.00 NA NA NA NA NA NA 95.24 NA NA NA NA NA NA NA K intron_retention shep,RI_chr3L_5163541_5194164,I_chr3L_5177084_5177314,I_chr3L_5193467_5212049 chr3L - chr3L_5155711_5156066 chr3L_5155710_5155711;chr3L_5156066_5156067 chr3L_5155556_5155710;chr3L_5156067_5156229 1.60 0.78 0.00 1.91 1.75 1.64 1.15 1.59 1.86 0.00 1.60 1.84 4.73 1.78 2.45 1.04 2.86 1.97 1.11 1.38 1.95 0.82 1.90 1.75 1.67 0.00 1.50 1.48 1.84 1.17 0.50 1.61 1.63 1.74 2.41 3.48 1.27 0.00 2.01 2.20 1.38 1.42 1.39 2.14 0.37 0.75 1.42 3.45 1.67 0.00 2.40 0.00 1.57 0.00 1.81 2.97 0.00 1.12 K alternative_donor dorsal,RI_chr2L_17438018_17439189,FI_chr2L_17449369_17450215,noncoding_3500,RI_chr2L_17450002_17450219 chr2L - chr2L_17449369_17449875;chr2L_17449369_17450219;chr2L_17449369_17450310;chr2L_17449369_17450215 chr2L_17449369_17450325 chr2L_17449296_17449368;chr2L_17450326_17450359 0.00 0.00 0.00 1.61 0.00 0.00 1.69 0.00 2.82 0.00 0.00 0.00 3.23 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 5.41 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 1.43 0.00 0.00 0.00 0.00 3.57 0.00 0.00 6.25 0.00 0.00 0.00 2.94 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 K intron_retention noncoding_5243,l(2)44DEa,I_chr2R_4553577_4562151,I_chr2R_4553817_4565934,I_chr2R_4554300_4563976,I_chr2R_4565692_4565934 chr2R + chr2R_4568554_4568614 chr2R_4568553_4568554;chr2R_4568614_4568615 chr2R_4568290_4568553;chr2R_4568615_4568890 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.46 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Nhe2,I_chr2L_21122390_21122912 chr2L + chr2L_21124522_21127849 chr2L_21124522_21125316;chr2L_21125440_21127849 chr2L_21125317_21125439 chr2L_21124443_21124521;chr2L_21127850_21128062 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 N jcn_only_AA CG13185 chr2R - chr2R_7757210_7757323 chr2R_7757263_7757323 chr2R_7757324_7757450;chr2R_7756791_7757209 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 89.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA Lag1,RI_chrX_6153758_6161036,I_chrX_6160751_6160887,I_chrX_6160907_6161036 chrX - chrX_6160907_6161036;chrX_6153758_6161036 chrX_6160751_6161036 chrX_6161037_6161136 88.67 93.10 90.62 80.56 88.00 81.82 86.49 96.30 87.69 88.46 61.54 82.61 94.59 90.48 96.15 85.00 81.58 86.84 87.50 88.89 82.76 92.98 90.70 90.91 NA 93.06 84.85 NA 92.68 94.34 88.89 75.00 84.62 90.36 78.05 96.88 90.48 81.48 82.14 75.71 90.00 83.33 90.00 98.25 81.82 95.65 89.74 91.46 89.47 78.05 90.62 NA 85.71 78.57 91.30 84.44 82.35 97.70 K intron_retention CG3825 chr2R - chr2R_19863611_19863670 chr2R_19863610_19863611;chr2R_19863670_19863671 chr2R_19863040_19863610;chr2R_19863671_19864751 0.00 0.00 0.00 1.81 0.00 0.00 0.48 0.00 1.51 0.00 0.00 0.96 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 2.63 2.27 5.80 4.08 1.24 0.00 0.00 0.00 1.93 0.00 0.00 0.00 0.00 0.00 0.00 3.90 0.00 0.00 0.00 0.00 0.34 0.00 1.00 0.41 0.53 0.62 0.00 0.00 0.00 1.37 0.00 0.00 0.40 K intron_retention Dscam,F_chr2R_3219886_3225754,I_chr2R_3219886_3226532,FI_chr2R_3219886_3227659,F_chr2R_3219886_3228449,F_chr2R_3219886_3228832,F_chr2R_3226043_3235353,F_chr2R_3227948_3235353,F_chr2R_3228738_3235353,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3219886_3231783 chr2R_3219885_3219886;chr2R_3231783_3231784 chr2R_3219786_3219885;chr2R_3231784_3231796 35.71 NA 35.71 32.00 NA NA 35.71 45.00 41.67 NA NA 36.36 NA NA NA 41.67 38.46 NA 41.18 20.00 NA NA 22.22 NA NA NA NA NA NA 26.67 35.29 NA NA 41.67 NA NA NA NA NA NA NA 42.11 NA 28.57 NA NA NA 25.00 28.57 NA 23.08 NA NA NA 41.67 NA NA NA K alternative_last_exon Idh,I_chr3L_8351006_8351949,I_chr3L_8351036_8351655 chr3L - chr3L_8351006_8351655,chr3L_8351036_8351655 chr3L_8351173_8351655 chr3L_8349105_8351005 chr3L_8351116_8351172 chr3L_8351656_8351715 0.95 1.09 0.91 1.20 1.03 0.79 1.20 2.11 0.89 2.53 0.95 1.24 0.00 1.64 1.49 1.47 1.45 0.92 0.00 1.20 0.95 0.00 0.71 1.40 0.93 0.74 0.88 1.19 0.98 2.97 2.30 0.00 0.56 0.00 0.00 0.85 0.60 0.89 0.40 2.00 1.16 1.40 0.00 1.41 1.23 0.85 0.94 0.83 1.21 2.82 1.43 1.85 0.87 0.64 2.26 0.77 0.56 1.09 K intron_retention Qm,E_chr3L_23087825_23087922,RI_chr3L_23087947_23088093 chr3L - chr3L_23087947_23088005 chr3L_23087946_23087947;chr3L_23088005_23088006 chr3L_23087923_23087946;chr3L_23088006_23088022 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA arr,I_chr2R_9343426_9343486,I_chr2R_9347031_9370659 chr2R - chr2R_9369590_9370659 chr2R_9369720_9370659 chr2R_9370660_9370692;chr2R_9369281_9369589 12.50 NA NA NA NA NA 14.29 NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention beta-Spec chrX + chrX_17562697_17562783 chrX_17562696_17562697;chrX_17562783_17562784 chrX_17562530_17562696;chrX_17562784_17563224 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.36 0.00 K intron_retention CG3168 chrX - chrX_6616726_6617412 chrX_6616725_6616726;chrX_6617412_6617413 chrX_6614598_6616725;chrX_6617413_6618133 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 1.75 1.15 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention PhKgamma,I_chrX_11590183_11590435,I_chrX_11596563_11597322 chrX + chrX_11595161_11597322 chrX_11595160_11595161;chrX_11597322_11597323 chrX_11595075_11595160;chrX_11597323_11597422 11.77 0.00 11.11 14.81 4.55 NA 29.03 7.41 10.53 23.53 6.67 12.77 NA 0.00 9.09 8.70 13.33 10.53 5.56 10.34 17.39 27.50 12.50 12.90 9.52 7.41 22.22 NA 18.75 13.64 6.67 0.00 17.65 11.54 15.79 13.04 14.00 8.33 8.70 17.24 36.36 7.69 22.22 16.00 7.69 10.00 2.78 13.04 13.16 15.62 17.65 15.79 5.00 7.14 12.00 4.17 4.65 12.50 K intron_retention vir-1,I_chr2L_12404131_12404435,RI_chr2L_12404178_12404435,I_chr2L_12404178_12407208,RE_chr2L_12409622_12421640,I_chr2L_12421830_12423260 chr2L - chr2L_12404178_12404435 chr2L_12404177_12404178;chr2L_12404435_12404436 chr2L_12404124_12404177;chr2L_12404436_12404479 12.13 NA 11.11 16.07 NA NA 60.87 5.77 25.81 NA NA 15.38 NA NA 20.00 23.53 10.34 NA 12.50 10.53 0.00 17.39 NA NA NA 21.05 NA NA 25.00 NA 9.68 11.11 6.67 11.76 NA NA NA NA NA 15.79 11.11 6.00 12.50 30.77 8.00 21.88 NA 20.00 6.67 NA NA NA NA NA 10.53 NA NA 0.00 K intron_retention CG12065,CE_chrX_8469528_8477573 chrX + chrX_8479952_8480018 chrX_8479951_8479952;chrX_8480018_8480019 chrX_8479843_8479951;chrX_8480019_8480278 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.36 0.18 0.00 0.00 0.00 0.93 1.65 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor Xrp1,I_chr3R_14741648_14750799,I_chr3R_14750298_14750799 chr3R + chr3R_14749868_14750799 chr3R_14749868_14750009 chr3R_14749792_14749867;chr3R_14750800_14750899 18.52 8.82 13.79 33.77 6.25 13.04 21.18 22.03 18.57 20.83 40.00 20.00 37.50 18.18 12.00 24.44 8.57 27.78 16.22 33.33 20.00 9.52 20.88 21.15 23.53 12.00 17.33 23.68 16.67 25.00 15.07 19.05 26.09 17.78 23.53 11.29 22.22 16.00 13.33 19.05 23.08 17.65 14.81 15.29 15.38 18.52 15.15 20.83 23.81 20.63 26.09 20.59 10.53 13.64 16.00 15.15 13.51 13.64 K jcn_only_AD Graf,RI_chrX_15652351_15654288,RI_chrX_15652363_15654157,RI_chrX_15652363_15654499,RI_chrX_15654228_15654288 chrX - chrX_15652363_15654272;chrX_15652363_15654499 chrX_15652363_15654157 chrX_15652357_15652362;chrX_15654500_15654599 55.00 NA NA NA NA NA NA NA 55.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor chico,I_chr2L_10246534_10246899 chr2L - chr2L_10246040_10246899 chr2L_10246534_10246899 chr2L_10246900_10246999;chr2L_10245878_10246039 9.30 4.00 8.82 7.89 12.50 19.05 13.79 11.11 11.32 7.69 5.56 6.52 13.79 12.00 7.69 10.42 11.76 12.00 15.15 11.32 20.00 16.67 8.16 13.33 10.53 9.52 19.35 10.71 12.50 6.25 11.76 5.56 4.55 10.53 10.00 3.45 4.26 6.06 8.82 8.62 NA 10.53 9.52 7.50 6.67 9.09 4.76 3.45 12.24 7.41 9.76 9.09 0.00 6.67 6.67 4.76 9.52 4.17 K intron_retention CG4853,CG4866 chr2R + chr2R_13404034_13404089 chr2R_13404033_13404034;chr2R_13404089_13404090 chr2R_13403890_13404033;chr2R_13404090_13404295 0.00 0.00 0.00 1.54 0.00 0.00 1.47 1.37 1.37 0.00 0.00 0.00 0.00 0.00 5.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 5.45 4.35 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG7702,CG31230 chr3R + chr3R_14497097_14498553 chr3R_14497097_14498543 chr3R_14496860_14497096;chr3R_14498554_14500401 100.00 100.00 100.00 100.00 100.00 100.00 98.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 98.61 100.00 100.00 100.00 100.00 100.00 98.44 100.00 100.00 100.00 100.00 100.00 100.00 97.56 99.15 100.00 100.00 100.00 98.70 99.01 100.00 100.00 99.17 100.00 99.10 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention miple2,I_chr3L_274251_274594 chr3L + chr3L_274242_274594 chr3L_274241_274242;chr3L_274594_274595 chr3L_274151_274241;chr3L_274595_274694 1.32 0.00 0.00 2.92 0.00 0.00 3.28 0.00 0.67 0.00 0.00 3.30 0.00 1.96 0.00 4.35 0.00 0.00 0.00 0.72 0.00 2.15 1.63 2.42 1.32 3.92 2.27 0.00 0.00 0.00 1.59 1.49 2.67 3.49 4.69 6.52 2.05 0.00 1.69 1.71 1.33 4.12 0.00 0.65 1.67 0.00 1.21 0.00 1.03 0.81 1.98 2.50 2.04 2.00 1.61 0.00 1.75 0.00 K jcn_only_AD RI_chr3L_17480321_17481164,Oatp74D,chr3L_17480319_17480976.0,I_chr3L_17480594_17481164,I_chr3L_17500359_17500724 chr3L + chr3L_17480321_17481164;chr3L_17480290_17481164;chr3L_17480301_17481164 chr3L_17480594_17481164 chr3L_17481165_17481264;chr3L_17480274_17480289 3.85 NA NA NA NA NA NA NA 3.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N intron_retention R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083522_8089490 chr2L_8083521_8083522;chr2L_8089490_8089491 chr2L_8083444_8083521;chr2L_8089491_8089493 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.29 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD RpL18A,I_chr2R_13434492_13434554,I_chr2R_13434492_13434576 chr2R - chr2R_13434492_13434576;chr2R_13434492_13434913 chr2R_13434492_13434554 chr2R_13434392_13434491;chr2R_13434914_13434994 0.21 0.08 0.15 0.08 0.09 0.08 0.24 0.04 0.18 0.31 0.10 0.12 0.09 0.00 0.13 0.00 0.10 0.07 0.06 0.09 0.03 1.37 1.48 1.50 1.37 0.09 1.47 0.25 1.81 0.45 0.14 0.24 0.21 0.08 0.23 0.53 0.55 0.50 0.98 0.25 0.48 0.05 0.08 0.21 0.25 0.50 0.47 0.13 0.16 1.27 1.72 0.16 0.30 5.26 0.07 0.33 0.18 0.27 K intron_retention CG1161,RI_chr3R_1181273_1181459,I_chr3R_1182079_1182146 chr3R + chr3R_1181273_1181555 chr3R_1181272_1181273;chr3R_1181555_1181556 chr3R_1181173_1181272;chr3R_1181556_1181559 0.87 0.43 0.00 1.85 0.00 0.00 3.54 0.45 1.11 3.23 0.00 1.06 0.00 1.74 1.08 0.00 0.00 0.00 0.00 0.61 1.19 2.90 0.87 1.50 4.44 4.08 1.06 1.27 1.94 3.10 0.80 1.54 0.00 0.00 0.00 2.46 0.33 1.61 1.07 3.28 1.75 0.68 1.23 1.15 2.29 1.15 0.45 0.00 0.00 1.99 0.52 0.87 0.00 0.99 0.53 0.00 0.44 0.00 K jcn_only_AD I_chr3L_20306985_20307177,CG6680 chr3L + chr3L_20310517_20310578 chr3L_20310521_20310578 chr3L_20310579_20310888;chr3L_20310328_20310516 1.21 3.12 NA 7.14 NA 0.00 0.00 0.00 1.49 NA NA 0.00 0.00 2.33 6.67 2.04 NA NA 0.00 0.00 NA 3.57 0.00 0.00 NA NA 10.00 NA NA 0.00 0.00 2.17 3.33 2.70 0.00 NA 0.00 3.70 NA 5.56 0.00 2.63 NA 3.12 4.55 1.64 0.00 0.00 0.00 0.00 3.33 3.45 0.00 NA 0.00 3.57 2.06 0.94 K intron_retention CycB,I_chr2R_18692089_18692164 chr2R - chr2R_18692096_18692164 chr2R_18692095_18692096;chr2R_18692164_18692165 chr2R_18691518_18692095;chr2R_18692165_18692264 1.00 0.00 1.40 2.45 0.95 0.00 0.86 1.82 0.80 0.00 0.00 1.99 0.00 2.17 1.67 0.00 0.00 1.03 0.00 1.97 2.35 0.00 1.67 1.85 1.38 0.00 2.37 3.12 2.04 0.00 0.00 0.00 0.00 0.52 1.42 1.89 0.81 0.83 0.00 0.91 1.96 1.18 0.00 0.97 1.00 3.70 0.56 1.64 2.68 0.00 1.28 1.92 1.92 0.00 1.71 1.49 0.00 1.90 K jcn_only_AA PPP4R2r chrX + chrX_10373751_10373868 chrX_10373751_10373821 chrX_10373523_10373750;chrX_10373869_10374057 2.60 9.09 4.05 0.00 2.27 0.00 4.41 1.08 3.36 7.69 3.45 1.02 5.00 0.00 2.90 4.76 0.00 4.08 1.96 2.00 1.89 0.00 3.17 4.92 2.56 1.69 4.08 4.00 5.88 0.00 9.09 2.86 0.00 2.02 2.22 7.89 2.04 9.30 0.00 1.18 2.56 4.39 0.00 2.50 3.03 6.25 0.00 3.92 1.75 4.35 1.15 4.76 4.00 0.00 2.60 0.00 2.86 4.88 K intron_retention Tsp42Ed chr2R - chr2R_2897806_2897936 chr2R_2897805_2897806;chr2R_2897936_2897937 chr2R_2897608_2897805;chr2R_2897937_2898098 5.92 5.48 8.38 9.94 6.62 9.68 7.14 7.73 11.14 5.92 6.45 5.69 9.90 6.37 9.24 11.85 8.40 6.92 11.25 6.87 6.00 3.84 5.95 5.17 5.24 10.00 5.54 2.95 4.33 5.46 17.86 4.40 5.12 8.44 5.00 5.37 4.54 2.48 5.70 5.74 3.68 7.38 7.69 3.83 4.39 3.44 4.21 4.33 8.85 4.41 7.17 6.33 2.65 6.50 7.47 3.90 2.83 3.42 K intron_retention mRpS24 chr3R - chr3R_19988883_19988939 chr3R_19988882_19988883;chr3R_19988939_19988940 chr3R_19988820_19988882;chr3R_19988940_19989008 7.50 6.56 10.00 7.46 10.81 12.50 18.92 14.04 8.97 4.88 7.41 5.63 15.00 10.00 8.89 13.33 0.00 4.88 10.81 7.84 10.81 26.32 7.46 7.06 7.89 14.29 6.25 11.76 9.52 0.00 14.29 0.00 8.89 10.94 7.50 5.00 4.48 6.35 6.74 3.80 9.76 11.96 11.76 5.77 4.17 4.29 9.23 5.26 9.23 7.27 4.62 6.45 2.78 4.92 12.20 9.46 3.90 1.32 K alternative_acceptor Fibp,RI_chr3L_19810268_19810326 chr3L - chr3L_19809780_19809819;chr3L_19809775_19809819 chr3L_19809762_19809819 chr3L_19809820_19809920;chr3L_19809693_19809761 94.44 100.00 94.44 92.68 100.00 91.30 91.67 100.00 93.75 NA 94.12 93.33 NA 100.00 85.00 100.00 100.00 93.33 90.32 96.55 NA 100.00 90.91 100.00 78.57 100.00 92.86 NA 75.00 NA 78.12 94.74 100.00 100.00 NA 89.47 90.91 100.00 96.77 92.59 76.47 91.89 84.62 93.33 100.00 94.59 94.44 96.55 91.67 96.55 92.00 100.00 NA 94.44 100.00 96.55 97.37 92.59 K cassette hipk,RI_chr3L_548068_552227 chr3L + chr3L_543278_569526 chr3L_543278_547481;chr3L_548068_569526 chr3L_547482_548067 chr3L_543059_543277;chr3L_569527_569816 100.00 100.00 100.00 100.00 100.00 99.73 100.00 100.00 99.90 100.00 100.00 99.76 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.90 99.70 99.87 100.00 99.76 99.69 99.05 100.00 99.59 99.85 100.00 100.00 100.00 100.00 100.00 100.00 99.82 100.00 100.00 100.00 99.76 100.00 100.00 100.00 100.00 100.00 100.00 99.53 100.00 99.87 100.00 100.00 100.00 100.00 99.21 99.78 100.00 100.00 99.81 K intron_retention klett chrX - chrX_21496960_21497036 chrX_21496959_21496960;chrX_21497036_21497037 chrX_21496696_21496959;chrX_21497037_21497279 100.00 100.00 100.00 99.07 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.11 100.00 K intron_retention sle chr3R + chr3R_6159306_6159372 chr3R_6159305_6159306;chr3R_6159372_6159373 chr3R_6159219_6159305;chr3R_6159373_6161608 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA MB8.chr3R.pasa.66,CG1091,I_chr3R_2910029_2910096,RI_chr3R_2910490_2910686,RI_chr3R_2911041_2911135,RI_chr3R_2946518_2946663 chr3R - chr3R_2910029_2910096 chr3R_2910041_2910096 chr3R_2910097_2910162;chr3R_2909929_2910028 100.00 98.15 100.00 97.67 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 96.92 100.00 100.00 100.00 100.00 99.14 97.83 100.00 100.00 99.00 100.00 100.00 100.00 NA 98.36 98.70 100.00 100.00 100.00 98.28 97.62 100.00 100.00 100.00 99.02 97.83 97.87 98.48 100.00 97.14 100.00 100.00 100.00 93.65 98.77 100.00 98.77 100.00 100.00 100.00 100.00 100.00 100.00 97.73 K intron_retention slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,RI_chr2R_20289332_20289739,I_chr2R_20289332_20289846,I_chr2R_20289332_20290093 chr2R - chr2R_20289295_20289357 chr2R_20289294_20289295;chr2R_20289357_20289358 chr2R_20289232_20289294;chr2R_20289358_20289459 96.78 100.00 96.00 100.00 100.00 91.30 92.16 96.92 94.37 100.00 100.00 91.53 96.67 96.88 96.97 98.15 93.94 96.00 97.50 97.96 95.00 96.30 97.06 95.45 100.00 92.31 93.33 93.33 78.95 95.83 100.00 NA 96.67 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 98.04 92.59 96.55 NA 100.00 94.12 95.00 96.43 92.31 97.22 93.75 100.00 100.00 100.00 NA 91.67 93.75 K jcn_only_AA Nedd4,I_chr3L_17532828_17532882,I_chr3L_17532828_17533787,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17532828_17532882;chr3L_17532828_17533787 chr3L_17532828_17533790 chr3L_17532728_17532827;chr3L_17533791_17533887 91.17 NA NA 31.03 NA 96.67 87.50 84.62 93.88 NA NA 88.68 NA NA 97.22 90.00 NA 62.50 86.96 86.67 NA NA 91.43 100.00 NA 100.00 93.33 NA 90.91 NA 84.00 NA 92.00 91.67 96.00 92.86 92.11 93.75 93.33 87.27 NA 77.50 NA 87.50 NA NA NA 80.00 94.87 NA 83.87 93.75 NA NA 84.00 NA NA NA K jcn_only_AD Iap2,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CEI_chr2R_11826763_11827279 chr2R - chr2R_11821325_11821703 chr2R_11821325_11821603 chr2R_11821304_11821324;chr2R_11821704_11822085 8.43 5.48 6.36 26.71 7.92 7.78 7.21 7.73 3.89 7.58 13.40 6.14 7.26 6.48 11.97 16.07 10.00 12.40 9.89 12.59 12.00 4.23 8.98 8.29 10.81 13.45 16.36 15.22 10.00 7.76 19.57 8.43 7.62 7.95 9.76 13.33 4.86 7.02 9.57 9.97 8.15 13.04 10.26 3.12 11.36 7.85 3.40 15.96 10.45 8.76 6.28 7.32 8.08 9.26 5.84 5.56 4.70 10.98 K alternative_acceptor CG10880,CG15386_CG42371 chr2L - chr2L_2215457_2215514;chr2L_2215454_2215514 chr2L_2215460_2215514 chr2L_2215515_2216288;chr2L_2215021_2215453 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA 83.33 100.00 NA NA NA 88.89 100.00 NA 87.50 NA NA NA NA NA NA NA NA NA 100.00 K jcn_only_AA RluA-2,I_chr2L_10480906_10481097 chr2L + chr2L_10481571_10481621;chr2L_10481571_10481646 chr2L_10481571_10481629 chr2L_10481509_10481570;chr2L_10481647_10481707 3.52 NA 5.00 5.26 NA NA 3.33 2.56 0.00 NA 0.00 0.00 0.00 NA 6.90 0.00 NA NA 0.00 5.66 NA 0.00 5.00 NA NA 8.33 0.00 NA 16.67 0.00 9.84 NA 3.70 0.00 4.76 NA NA NA 9.09 3.77 0.00 5.13 NA 5.00 0.00 5.41 4.17 5.71 2.70 NA 0.00 NA 0.00 12.50 0.00 11.54 NA 2.17 K jcn_only_AD MAN1,I_chr2R_19922148_19922210,I_chr2R_19939693_19939776,I_chr2R_19946657_19946733 chr2R + chr2R_19921944_19922210 chr2R_19921956_19922210 chr2R_19922211_19922310;chr2R_19921802_19921943 86.11 97.14 87.76 89.47 96.55 82.35 77.55 83.33 88.46 NA 67.86 84.52 NA 78.95 91.67 79.49 90.62 86.11 81.82 86.67 93.94 88.89 79.31 82.35 80.65 91.11 79.59 74.19 90.00 83.78 85.37 94.12 80.52 88.16 83.33 91.84 89.74 78.95 84.00 89.39 80.00 91.18 83.78 91.84 88.37 85.96 81.08 87.32 86.08 78.12 86.89 84.21 95.45 96.43 87.18 87.50 82.98 86.46 K jcn_only_AA l(2)NC136,I_chr2R_1545723_1546024 chr2R - chr2R_1549867_1549960 chr2R_1549882_1549960 chr2R_1549961_1550058;chr2R_1549732_1549866 100.00 100.00 100.00 100.00 100.00 95.24 100.00 99.38 99.47 96.67 98.39 98.13 100.00 100.00 98.78 99.48 100.00 100.00 98.26 100.00 100.00 100.00 100.00 97.92 100.00 100.00 98.39 97.50 100.00 100.00 100.00 100.00 100.00 99.48 100.00 100.00 97.67 100.00 100.00 98.65 97.56 99.30 98.72 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 97.56 NA 100.00 98.20 100.00 100.00 98.67 K intron_retention tefu,I_chr3R_11060517_11060585 chr3R - chr3R_11065127_11065183 chr3R_11065126_11065127;chr3R_11065183_11065184 chr3R_11065010_11065126;chr3R_11065184_11065248 0.00 0.00 0.00 1.72 0.00 0.00 6.25 0.00 7.81 NA 0.00 2.94 0.00 0.00 0.00 2.27 0.00 0.00 0.00 2.38 9.09 NA 7.14 0.00 0.00 12.50 9.09 NA NA NA 12.50 NA 5.56 0.00 0.00 5.26 0.00 0.00 0.00 0.00 NA 4.08 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K alternative_acceptor Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4847655_4847757;chrX_4847655_4848149 chrX_4847655_4848167 chrX_4847526_4847654;chrX_4848168_4848168 22.22 16.67 29.41 4.76 33.33 23.53 32.14 17.39 27.08 25.00 25.00 17.39 12.50 20.00 23.53 14.29 16.67 14.29 20.00 12.50 26.67 26.09 30.30 25.00 27.78 11.11 16.67 8.33 13.33 29.63 22.22 28.57 13.33 12.90 16.67 11.76 31.58 26.09 36.36 10.00 10.53 14.81 10.00 25.00 22.22 17.39 29.63 18.18 17.39 28.00 30.30 10.00 22.22 22.22 7.69 30.77 23.53 26.09 K alternative_acceptor CG15098,I_chr2R_14721883_14721980 chr2R - chr2R_14721883_14721980 chr2R_14721902_14721980 chr2R_14721981_14722049;chr2R_14721834_14721882 99.76 99.81 99.65 99.89 99.80 99.57 99.77 99.57 99.84 98.92 99.83 99.82 99.83 100.00 99.85 99.72 99.80 99.79 99.67 99.83 99.43 99.36 99.81 99.60 100.00 99.80 99.46 99.68 99.77 100.00 98.76 98.64 99.73 99.75 99.71 99.09 99.52 99.76 99.48 99.23 100.00 99.90 99.76 99.56 99.70 99.67 99.84 99.61 100.00 99.64 99.61 99.66 100.00 99.77 99.64 100.00 99.84 99.77 K intron_retention slv chr2R - chr2R_3969445_3969519 chr2R_3969444_3969445;chr2R_3969519_3969520 chr2R_3969367_3969444;chr2R_3969520_3969691 0.00 0.00 0.00 4.08 NA 0.00 0.00 7.89 6.90 NA NA 2.00 0.00 0.00 6.25 0.00 NA 0.00 0.00 1.54 5.56 0.00 0.00 0.00 0.00 0.00 4.35 NA 0.00 0.00 4.76 11.76 0.00 6.98 0.00 4.00 0.00 7.41 7.14 0.00 0.00 4.35 0.00 0.00 6.25 0.00 7.41 NA 4.08 0.00 6.67 0.00 0.00 0.00 3.03 0.00 0.00 6.25 K jcn_only_AA CG2774 chr2L + chr2L_3451244_3451306 chr2L_3451244_3451300 chr2L_3450358_3451243;chr2L_3451307_3451453 100.00 100.00 100.00 100.00 97.33 100.00 98.84 100.00 100.00 100.00 100.00 100.00 98.57 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.82 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.22 100.00 100.00 100.00 100.00 100.00 100.00 99.07 100.00 100.00 100.00 97.73 100.00 100.00 98.41 100.00 100.00 K intron_retention CG12012,CG12014 chr3L + chr3L_3376948_3376998 chr3L_3376947_3376948;chr3L_3376998_3376999 chr3L_3376786_3376947;chr3L_3376999_3377656 2.99 3.81 1.00 2.80 2.56 3.70 3.79 6.16 5.00 1.89 0.00 5.46 7.23 11.25 2.99 0.00 2.44 3.49 0.89 2.20 3.61 0.00 4.44 3.21 0.00 1.79 6.36 4.20 2.42 2.25 3.20 2.27 2.88 2.48 5.71 3.03 1.60 0.73 1.56 3.70 2.08 3.74 2.35 0.78 5.13 2.99 4.67 5.38 5.10 1.00 4.92 2.78 4.44 2.22 5.97 2.94 3.14 3.70 K intron_retention CG15445,REI_chrX_20988432_20988485,RI_chrX_20988432_20988489,REI_chrX_20988439_20988489,I_chrX_20988439_20988552 chrX + chrX_20988439_20988489 chrX_20988438_20988439;chrX_20988489_20988490 chrX_20988339_20988438;chrX_20988490_20988585 90.91 100.00 87.50 87.50 94.12 94.12 80.00 96.55 89.19 90.00 92.86 87.50 94.12 93.33 88.46 86.21 93.33 89.47 95.65 85.37 92.86 72.22 93.55 87.50 93.75 100.00 96.88 96.15 93.33 70.83 91.67 90.00 89.74 96.88 93.75 100.00 91.30 91.67 90.91 86.21 93.55 84.85 78.57 81.25 84.21 74.07 92.86 80.43 81.08 86.21 100.00 92.31 84.62 81.82 95.45 93.75 86.96 74.42 K multi_cassette cora,I_chr2R_15125277_15130573,I_chr2R_15125940_15130208,I_chr2R_15129291_15129988 chr2R + chr2R_15125940_15130208 chr2R_15125940_15128720;chr2R_15129291_15129678;chr2R_15129901_15129994;chr2R_15130091_15130208 chr2R_15128721_15129290;chr2R_15129679_15129900;chr2R_15129995_15130090 chr2R_15125887_15125939;chr2R_15130209_15130308 100.00 100.00 100.00 99.78 100.00 100.00 100.00 100.00 100.00 99.60 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.79 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG9143 chr2R - chr2R_16164667_16164723 chr2R_16164666_16164667;chr2R_16164723_16164724 chr2R_16164214_16164666;chr2R_16164724_16164843 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 12.50 NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 4.35 0.00 NA NA NA NA 0.00 0.00 0.00 NA 0.00 5.56 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_263306_263801 chr4_263305_263306;chr4_263801_263802 chr4_263273_263305;chr4_263802_263839 72.73 NA NA 80.00 NA NA 85.71 66.67 78.26 NA NA 64.71 72.73 63.64 71.43 78.57 87.50 NA 84.62 81.25 60.00 NA NA NA NA 87.50 NA NA NA NA 60.00 NA NA 66.67 NA NA NA NA NA NA NA 61.11 72.73 NA NA NA NA NA 71.43 NA NA NA NA NA 81.82 NA NA NA N intron_retention orb2,I_chr3L_8942860_8947477 chr3L - chr3L_8939541_8940927 chr3L_8939540_8939541;chr3L_8940927_8940928 chr3L_8939438_8939540;chr3L_8940928_8940989 9.62 5.56 8.00 41.18 22.22 0.00 17.24 13.64 9.52 NA NA 3.51 11.11 13.33 4.35 8.82 12.50 0.00 12.50 12.00 NA 21.05 12.20 8.11 25.00 22.73 6.06 20.93 12.82 21.43 13.79 6.67 17.65 11.11 3.12 12.50 0.00 9.09 0.00 8.51 6.12 17.39 11.11 17.65 4.65 9.72 2.70 12.07 5.56 4.55 10.34 0.00 14.29 0.00 4.17 0.00 0.00 4.88 K intron_retention Mitf,I_chr4_1225009_1225220,I_chr4_1225890_1225947 chr4 + chr4_1224415_1225216 chr4_1224414_1224415;chr4_1225216_1225217 chr4_1224159_1224414;chr4_1225217_1225376 0.00 NA NA NA NA NA 0.00 0.00 0.00 NA NA NA 0.00 NA NA 4.76 NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 5.88 NA NA NA NA NA 0.00 NA NA NA K alternative_last_exon CG42324 chr3L + chr3L_3505087_3506074 chr3L_3505087_3505178 chr3L_3506075_3507207 chr3L_3505179_3505325 chr3L_3505011_3505086 0.00 0.00 0.00 0.00 NA 0.00 0.00 50.00 14.29 NA 0.00 0.00 NA 0.00 0.00 25.00 NA NA 33.33 NA NA 0.00 0.00 0.00 20.00 0.00 0.00 0.00 33.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 14.29 0.00 0.00 0.00 33.33 NA NA 0.00 NA 20.00 33.33 K alternative_donor AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9003728_9004854;chrX_9004021_9004854;chrX_9003790_9004854 chrX_9003918_9004854 chrX_9004855_9004862;chrX_9003721_9003727 6.67 9.09 7.14 4.17 NA 11.11 11.11 5.56 9.68 NA 14.29 5.26 7.69 4.55 6.67 5.13 11.11 14.29 4.55 3.57 25.00 0.00 4.76 0.00 25.00 9.09 11.11 NA 0.00 12.50 3.70 0.00 0.00 3.85 14.29 18.18 0.00 16.67 16.67 6.67 10.00 3.70 7.69 11.11 NA 16.67 0.00 6.67 3.45 14.29 6.67 9.09 33.33 NA 3.70 0.00 NA 0.00 K intron_retention mav,RI_chr4_645290_646129 chr4 - chr4_646331_646421 chr4_646330_646331;chr4_646421_646422 chr4_646135_646330;chr4_646422_646475 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 93.75 94.12 NA 100.00 100.00 100.00 97.50 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG10737 chr2R + chr2R_15062814_15063770;chr2R_15062814_15063692 chr2R_15062814_15063752 chr2R_15062592_15062813;chr2R_15063771_15063852 5.47 6.84 7.75 5.77 5.56 6.42 23.26 5.91 6.91 10.42 5.10 4.76 4.46 7.62 7.02 2.96 5.36 3.62 5.08 5.97 9.68 9.17 3.68 4.03 3.90 2.40 1.82 10.34 5.88 3.85 4.94 6.33 8.46 4.62 3.37 2.38 2.24 6.67 5.03 3.73 4.76 6.05 7.07 3.68 17.12 3.70 4.65 6.45 6.54 1.03 4.96 9.41 7.41 3.67 4.29 5.47 5.74 6.25 K intron_retention cora,I_chr2R_15125277_15130573,I_chr2R_15125940_15130208,I_chr2R_15129291_15129988 chr2R + chr2R_15130091_15130208 chr2R_15130090_15130091;chr2R_15130208_15130209 chr2R_15129995_15130090;chr2R_15130209_15130308 0.64 0.82 0.28 0.90 0.62 0.30 2.02 0.60 1.06 0.45 0.26 1.59 1.47 1.35 0.95 0.00 1.31 0.26 0.89 0.86 0.00 1.08 0.31 0.32 0.29 1.39 0.44 0.95 0.57 0.22 1.24 0.50 0.16 0.92 1.05 0.46 0.27 0.91 0.60 0.82 0.82 0.80 1.09 0.00 0.59 0.64 0.55 1.06 0.67 0.51 1.14 0.34 0.91 0.36 1.57 0.00 0.50 0.74 N jcn_only_AD rl,F_chr2RHet_333976_338428,noncoding_9454 chr2RHet + chr2RHet_333976_334551 chr2RHet_334247_334551 chr2RHet_334552_334614;chr2RHet_333929_333975 100.00 100.00 100.00 77.14 100.00 100.00 100.00 100.00 100.00 NA 100.00 83.64 100.00 100.00 100.00 91.67 100.00 100.00 79.49 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA NA 81.54 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585716_2586402;chr3L_2585733_2586402 chr3L_2585739_2586402 chr3L_2586403_2586502;chr3L_2585639_2585715 96.52 93.88 94.44 98.52 94.02 92.82 96.64 95.98 97.97 100.00 96.25 98.13 97.01 98.21 98.65 97.18 96.32 95.81 97.54 96.21 95.07 95.48 95.98 96.72 100.00 98.05 97.25 92.75 95.65 97.16 97.80 93.51 93.30 97.09 96.89 95.81 94.92 97.04 97.37 96.49 96.97 97.30 93.75 98.85 95.50 98.19 93.94 95.73 96.52 96.08 96.21 96.72 93.24 94.12 96.80 97.25 97.92 96.00 K intron_retention RI_chrX_1405134_1408515,CG32810 chrX + chrX_1409719_1411001 chrX_1409718_1409719;chrX_1411001_1411002 chrX_1409411_1409718;chrX_1411002_1411653 99.33 100.00 100.00 100.00 100.00 100.00 98.88 99.31 99.23 100.00 100.00 93.50 100.00 100.00 100.00 98.82 100.00 100.00 98.04 99.47 100.00 98.85 99.13 99.00 100.00 98.08 98.95 100.00 98.77 97.14 100.00 98.57 99.21 99.13 100.00 100.00 98.13 100.00 99.16 99.30 98.82 99.33 100.00 100.00 95.45 98.43 98.94 100.00 99.30 98.86 99.07 100.00 100.00 98.85 100.00 100.00 100.00 99.19 K intron_retention CG13472,I_chr3L_14783173_14784369 chr3L + chr3L_14782314_14782418 chr3L_14782313_14782314;chr3L_14782418_14782419 chr3L_14780193_14782313;chr3L_14782419_14782869 0.00 0.00 0.00 4.48 0.00 0.00 1.72 0.00 0.77 0.00 0.00 3.61 2.63 0.00 4.84 2.27 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.36 2.53 3.17 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.98 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 1.37 0.00 0.00 0.00 0.00 0.00 0.80 0.00 K alternative_donor CG4853,CG4866 chr2R + chr2R_13401922_13402084 chr2R_13401924_13402084 chr2R_13402085_13403034;chr2R_13401783_13401921 1.95 0.00 3.23 2.76 0.00 2.02 3.45 1.23 1.63 0.00 0.00 1.93 0.00 2.13 2.65 0.00 1.23 3.80 1.06 3.12 0.00 4.76 1.69 0.00 2.20 1.98 2.29 6.35 4.11 1.95 2.52 0.00 3.34 2.13 2.99 5.04 3.26 1.11 1.10 1.08 2.73 1.73 3.03 0.00 1.05 1.24 3.66 2.08 1.11 5.36 2.16 1.69 5.08 1.37 2.56 1.32 0.00 1.39 K jcn_only_AA Spf45 chr2L - chr2L_22959810_22959876 chr2L_22959816_22959876 chr2L_22959877_22960833;chr2L_22959612_22959809 99.49 98.63 99.28 98.94 97.10 100.00 98.33 99.69 99.58 97.14 100.00 99.58 99.22 99.32 99.35 99.56 100.00 100.00 99.53 99.53 98.94 100.00 100.00 99.34 99.28 100.00 99.56 100.00 99.49 99.18 99.19 99.49 98.97 99.69 98.74 99.33 96.43 99.11 100.00 99.63 99.32 99.28 99.28 100.00 100.00 99.49 99.28 99.71 99.71 99.55 100.00 99.15 100.00 99.26 99.57 98.81 99.55 98.88 K intron_retention d4 chr2R + chr2R_1182569_1182620 chr2R_1182568_1182569;chr2R_1182620_1182621 chr2R_1182302_1182568;chr2R_1182621_1183461 7.79 4.00 2.56 11.76 4.65 6.90 6.45 12.24 7.92 0.00 7.69 4.23 5.41 12.90 16.22 11.11 4.00 5.26 13.89 10.11 7.69 4.65 7.69 5.17 5.26 10.71 9.38 13.16 10.53 11.90 11.76 10.34 11.76 8.16 0.00 5.71 5.56 4.44 0.00 8.86 5.00 12.33 11.54 2.70 10.34 9.62 0.00 7.94 8.06 6.56 3.77 9.68 9.80 4.00 11.76 8.00 3.75 7.79 K intron_retention Akt1 chr3R + chr3R_11928682_11928752 chr3R_11928681_11928682;chr3R_11928752_11928753 chr3R_11928535_11928681;chr3R_11928753_11929070 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG3011,I_chrX_5808514_5808613 chrX - chrX_5808437_5808613 chrX_5808514_5808613 chrX_5808614_5808683;chrX_5808420_5808436 0.31 0.00 0.00 0.00 0.00 0.67 0.86 0.41 0.33 0.48 0.71 0.31 0.00 0.00 0.00 0.00 0.76 0.00 0.71 0.00 0.83 2.10 0.00 0.44 0.00 0.00 0.41 0.31 0.00 1.16 1.61 0.61 0.00 0.00 0.74 0.83 0.67 0.00 0.27 0.35 0.63 0.29 0.86 0.31 0.85 0.40 0.45 0.00 0.34 0.40 0.00 0.00 0.00 0.49 0.00 0.35 0.00 0.00 K intron_retention noncoding_16269,I_chr3R_8192634_8193249,GstD1 chr3R - chr3R_8194298_8194924 chr3R_8194297_8194298;chr3R_8194924_8194925 chr3R_8193539_8194297;chr3R_8194925_8194962 0.37 0.00 0.48 2.11 0.00 0.00 0.40 0.37 0.74 1.39 0.00 0.65 0.00 0.57 0.42 0.81 0.79 0.00 0.00 0.22 0.00 1.62 1.61 1.89 3.49 0.00 2.86 2.62 1.87 0.00 0.00 0.00 0.00 0.00 0.00 2.17 1.13 2.04 0.00 0.00 0.00 0.29 0.00 0.73 1.33 2.55 0.00 1.32 1.03 1.57 4.44 0.00 0.00 0.00 0.00 1.31 0.00 0.00 K intron_retention RpL12,I_chr2R_19948517_19948682 chr2R + chr2R_19947973_19948035 chr2R_19947972_19947973;chr2R_19948035_19948036 chr2R_19947923_19947972;chr2R_19948036_19948097 20.52 25.93 17.50 6.90 12.07 5.56 19.61 6.15 10.87 60.00 7.89 13.64 16.22 15.15 11.90 17.39 10.26 14.29 7.58 17.24 13.16 50.00 83.33 NA NA 39.44 54.55 50.00 91.38 NA 38.75 27.78 11.76 8.70 NA NA 55.00 NA NA 44.44 33.33 9.52 8.33 54.55 14.29 50.00 58.33 37.50 21.43 53.85 NA 60.00 28.57 NA 8.06 81.82 77.78 29.09 K intron_retention mbc,I_chr3R_19615584_19615649,I_chr3R_19625220_19625288 chr3R + chr3R_19620963_19622820 chr3R_19620962_19620963;chr3R_19622820_19622821 chr3R_19620788_19620962;chr3R_19622821_19625219 1.59 0.00 2.90 3.94 1.69 1.59 1.80 4.44 3.01 3.45 1.59 1.33 8.47 3.70 2.78 1.83 1.56 0.00 5.48 3.76 2.90 0.00 1.79 2.41 3.85 0.00 3.85 0.00 0.00 2.17 0.00 0.00 0.00 1.79 0.00 0.00 2.15 0.00 0.00 4.11 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 2.30 4.55 0.00 0.00 2.38 2.00 0.00 0.00 K intron_retention Rala,noncoding_21767 chrX - chrX_3604282_3613395 chrX_3604281_3604282;chrX_3613395_3613396 chrX_3604102_3604281;chrX_3613396_3613464 2.22 0.00 2.78 2.22 1.61 0.00 2.67 2.41 3.57 0.00 0.00 5.62 8.89 0.00 0.00 7.69 5.88 3.57 2.33 5.68 0.00 9.68 5.06 1.47 0.00 2.04 3.70 7.41 11.11 2.13 0.00 0.00 4.69 2.70 5.88 0.00 6.45 2.08 3.33 2.56 0.00 5.31 5.71 0.00 3.92 0.00 0.00 4.55 3.96 0.00 1.64 0.00 0.00 0.00 1.89 0.00 2.90 0.00 K cassette CG30421 chr2R + chr2R_20632363_20640193 chr2R_20632363_20638822;chr2R_20638907_20640193 chr2R_20638823_20638906 chr2R_20631351_20632362;chr2R_20640194_20640426 0.00 0.00 0.00 2.22 0.00 0.00 0.00 2.27 0.00 0.00 0.00 1.82 0.00 3.85 0.00 0.00 0.00 0.00 0.00 1.69 0.00 2.13 1.23 1.72 2.17 0.00 1.72 2.86 0.00 0.00 2.70 0.00 2.54 2.00 0.00 3.28 1.10 1.72 1.41 0.00 0.00 1.72 0.00 3.57 0.00 0.00 3.23 0.00 0.00 0.00 1.72 0.00 0.00 4.00 0.00 3.23 0.00 0.00 K intron_retention CG16817 chr3R + chr3R_5503809_5504441 chr3R_5503808_5503809;chr3R_5504441_5504442 chr3R_5503640_5503808;chr3R_5504442_5504698 65.16 NA NA 35.71 NA NA 26.09 NA 72.73 NA NA 69.23 NA NA 70.00 66.67 NA NA NA 58.33 NA NA NA NA NA NA 63.64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA 60.00 NA NA NA NA K intron_retention fax chr3L - chr3L_16398937_16400120 chr3L_16398936_16398937;chr3L_16400120_16400121 chr3L_16398602_16398936;chr3L_16400121_16400459 38.89 46.15 41.18 57.14 40.91 41.18 12.90 31.25 44.44 28.57 41.67 57.69 NA 57.14 40.91 38.89 31.25 43.75 50.00 44.44 34.78 21.79 25.42 33.33 38.89 50.00 33.33 50.00 31.03 30.77 43.75 38.46 36.84 36.00 33.33 55.56 40.38 24.24 45.65 28.95 42.86 40.62 40.00 33.33 50.00 22.22 20.00 60.00 29.17 31.82 25.00 37.50 20.83 42.11 50.00 38.10 30.56 40.00 K jcn_only_AA CG4877 chr3L + chr3L_16382721_16382785 chr3L_16382721_16382778 chr3L_16382505_16382720;chr3L_16382786_16382977 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 97.73 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 96.88 100.00 NA 100.00 NA NA 100.00 100.00 100.00 100.00 96.67 100.00 100.00 96.97 100.00 100.00 98.28 NA 100.00 96.67 100.00 NA 97.62 100.00 100.00 100.00 100.00 100.00 100.00 96.55 97.30 100.00 97.83 K jcn_only_AD CG17737,I_chr3L_3223527_3224313,I_chr3L_3223650_3223769,I_chr3L_3223943_3224313 chr3L + chr3L_3223527_3223769 chr3L_3223650_3223769 chr3L_3223770_3223869;chr3L_3223475_3223526 0.14 0.00 0.00 0.00 0.58 0.00 0.41 0.00 0.22 0.77 0.00 0.14 0.33 0.00 0.50 0.11 0.00 0.27 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.40 0.74 0.35 0.35 0.84 1.35 0.00 0.00 0.35 0.55 0.00 0.23 0.44 0.00 0.00 0.00 0.00 0.91 0.00 0.21 0.00 0.25 0.17 0.21 0.00 0.49 0.18 0.23 0.16 0.23 0.00 K alternative_donor CG14478 chr2R + chr2R_13345226_13349498 chr2R_13345378_13349498 chr2R_13349499_13349990;chr2R_13345201_13345225 100.00 97.06 96.97 100.00 100.00 96.43 97.78 96.61 95.24 100.00 100.00 96.49 100.00 100.00 97.44 98.15 93.10 96.97 97.62 100.00 100.00 95.45 98.41 100.00 95.83 96.77 100.00 96.88 97.22 96.88 100.00 100.00 98.28 98.21 97.37 100.00 100.00 100.00 100.00 97.22 100.00 97.22 96.67 97.73 100.00 100.00 100.00 98.33 98.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG33298 chr2L + chr2L_9515495_9515564 chr2L_9515494_9515495;chr2L_9515564_9515565 chr2L_9515314_9515494;chr2L_9515565_9515744 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 1.43 0.00 0.00 0.00 0.00 NA 2.27 NA NA NA K intron_retention CG5594,CG2812 chr2R + chr2R_19799845_19799906 chr2R_19799844_19799845;chr2R_19799906_19799907 chr2R_19799711_19799844;chr2R_19799907_19799989 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 2.52 0.00 0.00 1.31 0.00 0.52 0.00 2.44 0.55 0.69 0.00 0.00 0.00 0.00 1.83 0.34 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Nos,I_chr2L_10826086_10826539 chr2L - chr2L_10812569_10813300 chr2L_10812884_10813300 chr2L_10813301_10813441;chr2L_10812493_10812568 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Cctgamma chr3R + chr3R_12473409_12473557;chr3R_12473479_12473557;chr3R_12473420_12473557;chr3R_12473424_12473557;chr3R_12473464_12473557 chr3R_12473318_12473557 chr3R_12473558_12473651;chr3R_12473311_12473317 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4558 chrX + chrX_6745086_6745332 chrX_6745085_6745086;chrX_6745332_6745333 chrX_6743806_6745085;chrX_6745333_6745917 10.34 18.52 20.69 29.17 NA 16.67 5.00 4.00 7.50 NA 12.50 7.50 11.76 20.00 14.81 10.00 NA 11.76 15.38 14.04 9.09 11.11 2.86 9.09 6.67 0.00 4.00 16.67 8.33 19.35 15.38 NA 0.00 8.33 0.00 25.00 10.34 8.33 11.90 19.23 10.71 7.41 NA 7.14 13.79 6.25 6.25 14.29 12.90 0.00 10.34 0.00 10.53 6.06 11.11 0.00 6.45 12.00 K alternative_donor I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,cg,I_chr2R_10064197_10068715,I_chr2R_10068194_10068715 chr2R + chr2R_10065706_10065776;chr2R_10065652_10065776 chr2R_10065709_10065776 chr2R_10065777_10066101;chr2R_10065603_10065651 24.21 20.27 24.00 24.74 24.59 21.31 25.97 26.88 24.17 18.87 21.88 26.61 18.64 24.56 24.10 27.14 21.67 25.93 23.44 22.73 28.07 20.00 22.94 24.73 31.58 18.84 25.77 29.41 23.61 24.21 26.67 15.79 24.56 22.22 18.84 25.00 23.89 18.29 26.72 28.19 22.64 26.36 27.27 23.29 25.37 24.36 25.45 21.26 27.68 25.71 25.23 21.92 20.75 34.04 19.32 28.81 23.40 18.29 K intron_retention m-cup chr3R - chr3R_12973460_12974359 chr3R_12973459_12973460;chr3R_12974359_12974360 chr3R_12973137_12973459;chr3R_12974360_12975127 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 7.14 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 K alternative_acceptor CG9776,CG9772 chr3R - chr3R_162125_162190 chr3R_162131_162190 chr3R_162191_163064;chr3R_161731_162124 98.08 96.15 96.15 96.55 96.30 100.00 95.45 97.30 97.96 100.00 100.00 97.56 96.15 100.00 100.00 100.00 100.00 100.00 100.00 98.41 100.00 97.67 100.00 97.37 100.00 93.33 96.67 94.74 96.88 100.00 100.00 100.00 100.00 97.44 100.00 100.00 96.77 100.00 100.00 98.08 97.14 97.62 100.00 97.06 100.00 97.14 96.67 97.62 100.00 100.00 97.22 100.00 95.83 95.00 100.00 100.00 97.37 93.88 K cassette Lar,I_chr2L_19644636_19644695,REI_chr2L_19702035_19702145 chr2L + chr2L_19717455_19725894 chr2L_19717455_19719702;chr2L_19720000_19725894 chr2L_19719703_19719999 chr2L_19717318_19717454;chr2L_19725895_19726034 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 97.56 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 97.14 96.67 100.00 100.00 100.00 95.45 100.00 94.44 100.00 100.00 83.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 96.15 91.67 100.00 100.00 95.83 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 85.71 100.00 K cassette Vha44,I_chr2R_12220926_12223455 chr2R - chr2R_12214666_12216921 chr2R_12214666_12216057;chr2R_12216420_12216921 chr2R_12216058_12216419 chr2R_12214479_12214665;chr2R_12216922_12217419 75.00 NA NA 80.00 NA NA 75.00 NA 100.00 NA NA 100.00 NA NA NA 60.00 NA NA NA 80.00 NA NA NA NA NA NA 75.00 75.00 NA NA NA NA 75.00 100.00 NA NA NA NA 100.00 75.00 NA NA NA 100.00 NA NA NA 75.00 NA 75.00 100.00 NA NA NA NA NA NA 40.00 K cassette CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8174699_8176572;chr2L_8174699_8175994 chr2L_8174699_8175175;chr2L_8175398_8175994,chr2L_8175398_8176572 chr2L_8175176_8175397 chr2L_8174536_8174698;chr2L_8176573_8176806 1.12 0.68 0.60 0.90 0.00 0.00 0.98 0.43 0.82 2.22 0.68 0.71 0.00 0.76 0.00 0.48 1.28 0.00 0.56 1.35 0.70 3.29 1.94 2.08 2.33 0.87 2.01 3.88 2.83 1.81 0.62 0.00 2.29 0.00 0.75 4.83 1.79 1.64 2.69 2.66 2.38 0.67 1.74 2.38 2.04 1.14 1.00 4.00 0.69 1.12 1.09 1.34 1.79 1.82 0.53 0.00 1.75 4.00 K intron_retention RpL15 chr3LHet + chr3LHet_2398091_2398143 chr3LHet_2398090_2398091;chr3LHet_2398143_2398144 chr3LHet_2398050_2398090;chr3LHet_2398144_2398454 100.00 99.74 100.00 99.84 99.87 100.00 99.72 99.94 99.93 100.00 99.86 100.00 99.72 100.00 99.90 100.00 100.00 99.64 100.00 99.96 100.00 100.00 100.00 100.00 100.00 99.86 99.33 100.00 99.69 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.11 100.00 100.00 100.00 100.00 99.85 100.00 99.81 99.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.77 99.91 100.00 100.00 99.91 K jcn_only_AD noncoding_18164,F_chr3R_17192061_17200781,RI_chr3R_17193489_17193631 chr3R + chr3R_17193416_17193631;chr3R_17193489_17193631 chr3R_17193407_17193631 chr3R_17193632_17193731;chr3R_17193389_17193406 14.29 19.05 NA 20.83 NA 14.29 23.08 15.62 16.67 NA NA 18.42 NA 15.00 18.18 11.43 NA NA 16.00 18.75 NA NA 10.00 NA NA 5.00 12.00 9.52 NA NA 16.67 NA NA 16.67 NA NA NA NA 8.70 33.33 5.00 7.50 4.55 16.00 4.17 14.81 NA 8.70 5.26 8.33 14.29 NA NA NA 9.38 3.70 16.00 0.00 K alternative_acceptor CG5360 chr2R + chr2R_19411660_19411871 chr2R_19411660_19411756 chr2R_19411476_19411659;chr2R_19411872_19411935 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 93.33 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 83.33 100.00 100.00 100.00 NA 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 91.67 100.00 100.00 100.00 100.00 NA NA 100.00 88.89 100.00 100.00 K alternative_donor f-cup,RI_chr3R_9522069_9522165,I_chr3R_9524004_9524059,EI_chr3R_9524613_9524789 chr3R - chr3R_9522069_9522163;chr3R_9522069_9522165;chr3R_9522069_9522158 chr3R_9522069_9522160 chr3R_9521969_9522068;chr3R_9522166_9522265 10.00 NA NA 0.00 NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor raw,I_chr2L_8712599_8712673,I_chr2L_8735201_8735693 chr2L - chr2L_8735201_8735725 chr2L_8735201_8735721 chr2L_8735101_8735200;chr2L_8735726_8735747 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 88.89 100.00 NA NA NA NA NA NA NA NA 100.00 NA NA 83.33 NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA fbp,I_chr2L_19762832_19763529,RI_chr2L_19763745_19764069 chr2L - chr2L_19762832_19764069;chr2L_19763745_19764069 chr2L_19763498_19764069 chr2L_19764070_19764120 57.69 NA 40.00 44.44 NA NA NA 44.44 60.00 82.76 NA 62.96 NA NA NA 48.00 NA NA 0.00 44.44 NA 70.83 NA 61.29 NA NA NA NA NA NA 62.07 NA 50.00 57.69 NA NA 62.96 NA 63.33 74.74 NA 51.72 31.82 76.67 NA 39.29 NA 34.48 43.75 64.00 71.43 NA NA 70.00 50.00 NA 68.18 40.00 K alternative_donor iPLA2-VIA chr3L - chr3L_9856717_9857106;chr3L_9856717_9857292 chr3L_9856717_9856876 chr3L_9856421_9856716;chr3L_9857293_9857459 12.33 6.98 13.33 7.45 12.90 12.82 10.89 10.99 11.93 25.00 13.16 13.54 10.26 10.17 9.09 22.08 10.87 12.28 11.32 11.93 9.80 20.56 11.11 13.79 16.00 17.31 23.53 23.08 26.09 18.75 12.12 23.08 22.97 11.83 10.53 10.34 14.75 12.00 16.95 10.99 15.15 14.44 11.90 12.70 33.33 13.33 10.42 27.27 10.00 13.89 12.33 9.62 9.38 5.00 13.33 8.11 5.13 12.50 K intron_retention unc-13,I_chr4_896337_896921,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_896337_896739 chr4_896336_896337;chr4_896739_896740 chr4_896237_896336;chr4_896740_896865 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K alternative_donor MED10,I_chr3L_16225377_16225479 chr3L + chr3L_16225377_16225479 chr3L_16225424_16225479 chr3L_16225480_16225579;chr3L_16225277_16225376 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 98.70 100.00 100.00 98.57 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.81 96.97 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 98.57 100.00 100.00 97.37 98.55 97.56 97.78 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 98.48 98.41 K alternative_donor larp,F_chr3R_24151542_24153876,I_chr3R_24160430_24160932,I_chr3R_24160430_24160971,RI_chr3R_24160430_24161527 chr3R - chr3R_24160430_24161729;chr3R_24160430_24160932;chr3R_24160430_24160971;chr3R_24160430_24160975;chr3R_24160430_24160979;chr3R_24160430_24161527 chr3R_24160430_24161939 chr3R_24160330_24160429;chr3R_24161940_24162125 3.12 2.56 6.52 2.07 5.00 4.05 4.58 2.33 2.30 5.56 1.64 2.27 1.32 4.49 6.82 3.31 5.13 2.38 5.43 2.50 2.94 2.97 3.51 4.04 1.75 1.35 3.09 2.56 9.33 1.27 6.25 3.45 4.61 3.12 3.03 1.32 4.21 5.80 3.00 6.20 1.92 3.85 0.00 1.37 6.82 1.67 2.94 4.96 1.27 3.12 3.92 5.33 5.00 0.00 5.77 2.17 2.13 4.12 K alternative_last_exon CG7341,noncoding_13313,CG32195 chr3L + chr3L_18106282_18112890,chr3L_18106282_18112871;chr3L_18106282_18107468 chr3L_18106282_18106718 chr3L_18112891_18114107;chr3L_18107469_18107857 chr3L_18106719_18107164 chr3L_18106149_18106281 0.00 0.00 6.67 4.00 0.00 0.00 4.55 4.35 0.00 0.00 0.00 5.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 6.67 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17490 chr2L + chr2L_22431301_22431358 chr2L_22431300_22431301;chr2L_22431358_22431359 chr2L_22431022_22431300;chr2L_22431359_22431462 73.68 71.88 82.61 84.62 77.78 77.50 72.62 93.85 80.85 66.67 55.56 80.56 76.32 86.05 72.97 91.59 80.56 84.62 78.57 78.08 58.62 69.39 75.00 73.68 86.67 77.78 75.00 68.18 78.12 61.29 36.14 61.54 65.31 81.08 72.73 84.21 74.29 53.33 78.12 64.06 56.25 80.30 74.29 66.67 60.00 52.17 65.71 65.62 85.71 65.52 72.34 65.52 86.36 58.62 79.07 65.62 71.43 63.33 K intron_retention I_chr3L_1494947_1496080,pUf68,I_chr3L_1499710_1499771,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1499338_1501345 chr3L_1499337_1499338;chr3L_1501345_1501346 chr3L_1499043_1499337;chr3L_1501346_1501397 93.33 83.33 92.31 100.00 NA 93.33 NA 100.00 89.29 NA 91.67 100.00 93.33 94.44 88.89 95.24 100.00 90.00 100.00 88.24 86.67 100.00 85.71 100.00 85.71 NA 94.12 93.75 100.00 92.31 69.57 88.89 72.73 95.45 82.35 NA 95.83 100.00 95.00 96.67 93.33 95.24 90.91 94.12 100.00 81.82 100.00 70.59 88.46 93.33 95.00 93.33 87.50 90.91 93.33 86.67 100.00 94.44 N jcn_only_AA wech,I_chr2R_3373673_3377000,I_chr2R_3373673_3377045,I_chr2R_3373673_3377324,I_chr2R_3376705_3376837 chr2R - chr2R_3373673_3376837;chr2R_3376705_3376837 chr2R_3376324_3376837 chr2R_3376838_3376937 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 13.41 0.00 NA 0.00 NA 0.00 18.64 NA 0.00 0.00 0.00 NA NA NA 15.00 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 K intron_retention Dyb,I_chr2R_8338101_8339173,I_chr2R_8348603_8351844 chr2R + chr2R_8325081_8325151 chr2R_8325080_8325081;chr2R_8325151_8325152 chr2R_8325012_8325080;chr2R_8325152_8325395 82.48 90.00 92.86 79.31 62.50 87.50 80.00 82.61 82.35 NA 90.91 89.47 70.00 85.71 73.33 87.50 92.31 80.00 88.89 80.95 NA NA 76.47 73.33 NA 92.86 88.89 NA NA 70.00 93.33 NA 81.82 90.00 NA NA NA 66.67 63.64 75.00 90.00 84.62 83.33 100.00 NA NA NA NA 74.07 77.78 66.67 83.33 NA NA 70.00 63.64 NA 87.50 K alternative_donor RI_chrX_502548_513324,CG13366,I_chrX_508729_508806,I_chrX_509497_513324,I_chrX_509727_511407,I_chrX_509727_511477,noncoding_21186,I_chrX_509834_511407,CRE_chrX_509851_511307,I_chrX_510004_511307,I_chrX_510004_511407,I_chrX_513176_513324,I_chrX_513519_513631 chrX - chrX_509834_511307;chrX_509834_511413;chrX_509834_511407 chrX_509834_511477 chrX_509751_509833;chrX_511478_511507 0.00 NA NA 0.00 NA 0.00 9.09 9.09 0.00 0.00 NA 11.11 NA NA NA 5.88 0.00 0.00 0.00 7.14 NA 0.00 0.00 12.50 0.00 0.00 0.00 NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA 7.69 0.00 0.00 NA NA NA 0.00 0.00 NA 16.67 NA NA NA 0.00 0.00 NA NA K jcn_only_AA Amph,I_chr2R_8495684_8495920,I_chr2R_8495684_8495960,I_chr2R_8498227_8498492 chr2R + chr2R_8495684_8496733 chr2R_8495684_8496673 chr2R_8495584_8495683;chr2R_8496734_8497141 100.00 100.00 100.00 96.30 100.00 100.00 97.06 100.00 100.00 NA 100.00 97.73 100.00 100.00 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 100.00 100.00 96.67 K jcn_only_AD l(1)G0196,I_chrX_21900456_21904601 chrX + chrX_21899988_21900142 chrX_21900084_21900142 chrX_21900143_21900455;chrX_21899063_21899987 98.56 98.77 99.12 100.00 99.07 99.10 99.28 99.50 99.62 100.00 100.00 100.00 97.67 100.00 100.00 99.24 98.98 100.00 98.15 97.88 100.00 93.75 98.85 96.30 100.00 97.83 87.23 88.57 93.75 100.00 98.32 96.72 98.99 95.83 97.59 91.30 94.95 95.65 96.91 98.56 93.94 99.14 100.00 97.74 94.44 97.96 96.77 99.36 99.17 97.06 95.18 98.04 97.30 97.50 97.66 100.00 100.00 100.00 K intron_retention CG17233,I_chr3L_20232803_20232962,RI_chr3L_20232898_20232962 chr3L - chr3L_20232711_20232962 chr3L_20232710_20232711;chr3L_20232962_20232963 chr3L_20232703_20232710;chr3L_20232963_20233016 32.29 25.00 NA NA 27.27 NA 50.00 43.75 45.00 NA NA 45.45 NA NA 33.33 NA NA NA NA 60.00 NA NA NA NA NA NA 50.00 60.00 NA 46.15 NA NA NA 22.22 NA NA 28.57 7.14 NA 46.15 NA 20.00 NA NA NA NA NA NA 26.67 NA 31.25 NA NA NA 25.00 7.69 NA NA K jcn_only_AA CG18659,E_chr2R_5011363_5019110,RI_chr2R_5013572_5014531,I_chr2R_5016147_5016997 chr2R - chr2R_5011645_5012248 chr2R_5011651_5012248 chr2R_5012249_5012725;chr2R_5011194_5011644 96.48 96.43 95.52 92.86 95.24 97.01 98.33 100.00 96.27 93.33 95.45 93.65 89.47 87.93 93.42 95.35 100.00 100.00 96.36 96.11 94.92 97.78 92.62 96.83 94.29 97.83 99.21 94.44 96.20 96.04 97.26 97.50 96.48 94.90 98.67 97.44 97.95 97.65 97.90 94.89 94.67 96.77 100.00 100.00 97.14 99.00 99.03 100.00 96.91 95.83 91.92 97.62 93.65 96.46 98.67 97.33 96.30 97.62 K intron_retention REI_chr3L_3042451_3043440,Jafrac2,I_chr3L_3042851_3043044,I_chr3L_3043202_3043271 chr3L + chr3L_3043390_3043440 chr3L_3043389_3043390;chr3L_3043440_3043441 chr3L_3043272_3043389;chr3L_3043441_3043540 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.92 0.00 0.00 0.00 1.87 0.00 0.00 0.00 3.50 4.84 0.00 0.00 0.00 0.00 0.00 1.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention upd3 chrX + chrX_18174217_18177429 chrX_18174216_18174217;chrX_18177429_18177430 chrX_18174019_18174216;chrX_18177430_18178269 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 4.44 6.45 NA NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA K alternative_acceptor CG13384 chr2L + chr2L_8386386_8386474;chr2L_8386386_8386483 chr2L_8386386_8386486 chr2L_8386217_8386385;chr2L_8386487_8387378 43.51 43.28 41.43 42.90 40.13 41.65 42.56 42.73 39.95 43.51 44.16 42.26 41.43 43.62 45.56 42.28 47.84 42.58 44.22 43.92 40.59 44.99 45.83 44.92 44.42 38.41 46.24 48.35 42.80 45.07 38.12 44.44 44.21 41.01 45.34 46.54 42.79 41.23 42.70 47.36 40.07 43.24 41.64 44.36 45.04 42.75 44.06 43.56 43.80 46.03 41.42 43.54 45.22 44.20 42.11 42.82 46.73 41.96 K intron_retention CG11134,CG11151 chrX + chrX_13632944_13633018 chrX_13632943_13632944;chrX_13633018_13633019 chrX_13632473_13632943;chrX_13633019_13633264 0.00 0.00 0.00 3.03 0.00 0.00 4.55 0.00 1.41 0.00 0.00 1.49 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr2L_10480906_10481097,Grip75 chr2L + chr2L_10483973_10484033 chr2L_10483972_10483973;chr2L_10484033_10484034 chr2L_10483687_10483972;chr2L_10484034_10484193 6.90 0.00 NA 11.76 NA 0.00 15.79 0.00 0.00 NA NA 7.41 NA NA 12.50 0.00 NA NA NA 6.90 NA NA NA NA NA NA 0.00 NA 30.77 NA 27.27 NA 13.33 10.00 NA NA NA NA NA 10.53 NA 6.25 NA 0.00 NA NA NA NA 15.38 12.50 0.00 NA NA NA 0.00 NA 0.00 NA K intron_retention ergic53 chr3L + chr3L_8530117_8530181 chr3L_8530116_8530117;chr3L_8530181_8530182 chr3L_8529991_8530116;chr3L_8530182_8531133 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon CREG,RI_chr3R_13220037_13220257 chr3R - chr3R_13219323_13219537 chr3R_13219477_13219537 chr3R_13216812_13219322 chr3R_13219329_13219476 chr3R_13219538_13219983 75.00 66.67 50.00 85.71 NA 66.67 75.00 66.67 60.00 66.67 NA 75.00 NA 66.67 50.00 40.00 66.67 75.00 60.00 80.00 75.00 100.00 75.00 80.00 NA 66.67 85.71 NA 66.67 NA 80.00 50.00 33.33 80.00 50.00 50.00 NA 75.00 66.67 80.00 100.00 50.00 50.00 NA NA 66.67 100.00 75.00 75.00 85.71 80.00 NA NA 75.00 50.00 75.00 100.00 NA K jcn_only_AA cib,I_chrX_4000307_4003527 chrX + chrX_4004044_4004195 chrX_4004044_4004184 chrX_4003930_4004043;chrX_4004196_4004670 100.00 100.00 100.00 99.62 99.21 100.00 100.00 99.26 100.00 100.00 100.00 99.60 100.00 100.00 100.00 99.55 100.00 100.00 100.00 99.71 100.00 100.00 100.00 100.00 99.21 100.00 99.36 100.00 100.00 100.00 100.00 99.34 100.00 99.57 98.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.45 100.00 99.67 100.00 100.00 99.64 100.00 99.52 100.00 100.00 100.00 100.00 100.00 99.01 100.00 K jcn_only_AA CG3635 chr2L + chr2L_22183467_22183599;chr2L_22183467_22183607 chr2L_22183467_22183527 chr2L_22183394_22183466;chr2L_22183608_22183915 40.57 33.13 27.81 28.47 25.00 30.84 50.00 32.59 35.22 44.44 34.13 39.89 42.67 46.72 31.43 39.26 33.85 30.22 40.27 40.11 39.44 34.10 28.06 44.81 56.80 40.57 24.87 29.29 52.88 41.57 47.06 56.82 37.41 39.04 41.03 67.46 43.71 38.51 40.30 52.27 58.22 34.17 33.68 51.93 46.58 55.36 48.46 63.42 45.64 33.52 47.89 57.14 41.86 48.41 40.91 40.66 30.63 55.22 K alternative_donor CG31243,CG42457 chr3R + chr3R_13769936_13772915 chr3R_13770009_13772915 chr3R_13772916_13773320;chr3R_13769899_13769935 77.78 NA NA NA NA NA NA NA 55.56 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG3967,RI_chr3L_9408567_9410728,RI_chr3L_9412100_9412179 chr3L - chr3L_9408567_9411443 chr3L_9408567_9410751;chr3L_9410915_9411443 chr3L_9410752_9410914 chr3L_9408508_9408566;chr3L_9411444_9411824 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 97.92 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.08 98.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD skpA chrX + chrX_550498_551131;chrX_550818_551131;chrX_550638_551131;chrX_550774_551131;chrX_550523_551131;chrX_550654_551131 chrX_550433_551131 chrX_551132_551937;chrX_550426_550432 16.27 23.50 23.03 16.47 21.05 21.58 15.07 20.92 26.30 11.38 16.67 16.27 22.40 26.71 17.83 18.71 29.20 17.49 23.86 15.50 19.42 6.78 13.79 21.10 19.27 21.51 3.03 6.59 1.14 11.64 12.02 12.30 12.36 19.55 17.78 3.25 10.50 15.79 12.44 6.77 6.30 22.97 18.64 11.00 8.15 6.63 15.38 7.03 24.33 16.85 12.81 17.65 9.56 14.16 17.41 12.67 17.68 8.37 K intron_retention Jupiter,I_chr3R_7418347_7445425,RE_chr3R_7419487_7429863,I_chr3R_7429934_7430307,I_chr3R_7429962_7445425,I_chr3R_7430006_7445425,RI_chr3R_7442748_7445425,RI_chr3R_7442793_7445425 chr3R - chr3R_7419489_7429863 chr3R_7419488_7419489;chr3R_7429863_7429864 chr3R_7419355_7419488;chr3R_7429864_7429933 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N multi_cassette boi,I_chrX_2363445_2363896 chrX - chrX_2339627_2344702 chrX_2339627_2340443;chrX_2340611_2340674;chrX_2340858_2340922;chrX_2341631_2344702 chrX_2340444_2340610;chrX_2340675_2340857;chrX_2340923_2341630 chrX_2338205_2339626;chrX_2344703_2344871 100.00 100.00 100.00 69.49 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette unc-5,E_chr2R_11238100_11240757,I_chr2R_11252444_11252570 chr2R + chr2R_11247974_11252017 chr2R_11247974_11249487;chr2R_11249806_11252017 chr2R_11249488_11249805 chr2R_11247920_11247973;chr2R_11252018_11252023 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 93.75 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 97.14 100.00 97.83 100.00 100.00 98.08 97.22 100.00 96.77 98.25 100.00 100.00 100.00 95.65 98.46 100.00 98.08 100.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4847655_4848149 chrX_4847654_4847655;chrX_4848149_4848150 chrX_4847526_4847654;chrX_4848150_4848168 9.52 6.25 15.38 13.79 9.09 20.83 23.33 9.68 16.36 14.29 13.33 13.79 83.33 19.05 13.04 10.00 3.85 NA 9.52 15.79 10.00 6.67 6.82 7.14 0.00 NA 3.45 8.70 0.00 0.00 14.63 0.00 12.50 17.50 10.53 0.00 2.04 6.67 6.82 9.09 11.11 13.16 NA 6.25 0.00 5.56 10.34 9.68 11.11 6.45 7.32 0.00 NA 0.00 25.00 0.00 11.11 9.09 K jcn_only_AA Pfrx,I_chrX_19390217_19400515,RI_chrX_19390217_19403850,RI_chrX_19392914_19400518,RI_chrX_19399882_19400518,I_chrX_19400112_19400515,RI_chrX_19400112_19400518,I_chrX_19400271_19400518 chrX + chrX_19392914_19400518 chrX_19392914_19400515 chrX_19392814_19392913;chrX_19400519_19400615 48.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 57.14 NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD F_chrX_15764251_15765393,CG16952,RI_chrX_15764587_15765393,I_chrX_15766003_15766047 chrX + chrX_15764432_15765393;chrX_15764522_15765393;chrX_15764247_15765393;chrX_15764620_15765393 chrX_15764599_15765393 chrX_15765394_15765493;chrX_15764236_15764246 15.84 NA NA 28.00 NA NA 15.00 16.67 12.50 NA NA NA NA NA NA 9.09 NA NA 20.00 13.04 NA NA NA NA NA NA NA NA NA NA NA NA NA 17.65 NA NA NA NA NA NA NA 6.25 NA NA NA NA NA NA 18.42 NA NA NA NA NA NA NA NA NA K cassette CG6643,I_chr3R_20370792_20375406 chr3R + chr3R_20374862_20377050;chr3R_20370792_20377050 chr3R_20370792_20375406,chr3R_20374862_20375406;chr3R_20375487_20377050 chr3R_20375407_20375486 chr3R_20370747_20370791;chr3R_20377051_20377534 86.32 84.62 89.74 94.59 86.32 79.00 87.80 83.64 88.76 51.85 70.51 82.35 70.10 87.72 84.21 86.39 90.48 82.76 88.55 84.57 89.39 86.54 81.13 89.33 79.31 73.68 90.00 86.00 77.78 79.66 82.48 87.88 84.44 89.18 82.28 63.51 89.09 82.69 85.94 80.00 74.29 87.06 89.25 77.53 77.42 84.15 89.71 82.76 89.00 92.00 86.36 87.93 90.00 86.36 87.68 88.46 91.09 90.14 K intron_retention unc-13,RI_chr4_892852_895828,RI_chr4_894198_895828,I_chr4_895008_895828,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_895094_895828 chr4_895093_895094;chr4_895828_895829 chr4_894872_895093;chr4_895829_895928 0.00 NA 0.00 0.00 0.00 0.00 0.00 10.34 2.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 12.50 0.00 NA NA NA 0.00 NA NA 0.00 0.00 10.00 NA NA 0.00 3.70 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 7.69 NA 2.86 0.00 NA NA 0.00 NA 0.00 NA K jcn_only_AD kis,RI_chr2L_231035_231947,RI_chr2L_242745_242800,I_chr2L_242926_250756 chr2L - chr2L_231035_231962 chr2L_231035_231947 chr2L_230935_231034;chr2L_231963_232047 15.86 28.75 9.09 19.23 20.73 15.91 12.88 22.62 17.62 16.33 13.79 12.68 20.00 19.15 19.58 15.86 11.11 20.00 20.00 20.19 12.90 2.07 16.28 8.33 9.62 15.79 12.50 16.88 37.72 12.93 19.42 6.82 19.58 14.29 17.86 5.88 13.04 17.86 17.59 18.75 5.71 17.41 11.70 20.74 13.04 25.86 11.54 11.21 20.57 12.50 17.31 8.33 15.00 4.00 24.82 11.76 6.25 7.29 K intron_retention sar1,I_chr3R_18185148_18185246 chr3R + chr3R_18182467_18183252 chr3R_18182466_18182467;chr3R_18183252_18183253 chr3R_18182460_18182466;chr3R_18183253_18183393 26.32 NA 17.39 39.13 15.79 17.65 25.93 6.67 26.32 NA 23.08 15.62 25.00 7.69 35.29 10.71 NA NA 32.26 25.00 33.33 90.00 38.46 NA NA 13.33 50.00 NA 72.73 NA 31.03 NA NA 17.14 NA NA NA NA NA 42.86 54.55 14.29 NA 47.06 33.33 NA 36.36 30.77 19.35 NA NA NA NA NA 22.73 NA NA 54.55 K alternative_acceptor Flo,I_chr2R_11456012_11456623 chr2R - chr2R_11454673_11454747 chr2R_11454678_11454747 chr2R_11454748_11454816;chr2R_11454609_11454672 100.00 98.70 100.00 100.00 100.00 98.33 100.00 100.00 100.00 97.44 100.00 99.13 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.48 100.00 100.00 100.00 100.00 100.00 98.28 100.00 100.00 100.00 98.61 100.00 99.12 100.00 100.00 100.00 100.00 100.00 99.11 100.00 100.00 99.28 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9003728_9004854;chrX_9003790_9004854;chrX_9003918_9004854 chrX_9004021_9004854 chrX_9004855_9004862;chrX_9003721_9003727 16.67 9.09 21.43 16.67 NA 11.11 18.52 22.22 16.13 NA 28.57 7.89 23.08 13.64 6.67 12.82 33.33 14.29 18.18 17.86 25.00 14.29 14.29 27.27 37.50 13.64 33.33 NA 22.22 12.50 14.81 25.00 28.57 15.38 14.29 27.27 11.11 16.67 33.33 20.00 20.00 14.81 15.38 22.22 NA 16.67 0.00 20.00 10.34 14.29 13.33 9.09 33.33 NA 11.11 14.29 NA 20.00 K alternative_acceptor CG8449,RI_chr3R_9096143_9096213,RI_chr3R_9096632_9096844 chr3R - chr3R_9096143_9096213 chr3R_9096153_9096213 chr3R_9096214_9096281;chr3R_9096084_9096142 96.67 100.00 93.33 96.00 100.00 92.86 100.00 96.55 95.74 100.00 92.31 96.43 100.00 94.12 100.00 100.00 92.31 93.33 95.00 97.73 95.24 94.74 96.67 96.00 100.00 100.00 97.06 93.33 95.00 90.91 92.86 96.77 95.24 96.00 93.75 88.24 92.59 100.00 97.30 97.56 100.00 97.37 100.00 96.55 95.83 97.62 100.00 97.22 97.22 100.00 96.15 100.00 95.24 100.00 100.00 95.65 100.00 100.00 K intron_retention Slip1,RI_chr4_684967_689045,I_chr4_685717_686576,RI_chr4_685717_689045,RI_chr4_687548_689045 chr4 + chr4_687559_689045 chr4_687558_687559;chr4_689045_689046 chr4_686581_687558;chr4_689046_689145 10.71 7.14 16.67 38.89 23.08 13.33 21.74 12.00 16.22 NA 7.41 20.75 29.17 15.15 12.50 18.60 8.33 11.76 7.32 9.64 13.79 11.11 11.43 5.71 11.11 8.33 16.13 27.78 7.69 11.54 10.71 NA 16.67 9.38 16.67 20.00 5.71 0.00 5.88 8.33 NA 10.71 9.52 9.68 NA 9.68 6.67 NA 15.52 14.29 4.65 5.56 0.00 0.00 4.76 8.33 5.13 NA K intron_retention I_chr2L_114992_156735,RI_chr2L_114992_155545,RI_chr2L_114992_155566,I_chr2L_114992_155637,I_chr2L_114992_156175,RI_chr2L_155430_155637,CG11455,CG3436 chr2L + chr2L_155430_155637 chr2L_155429_155430;chr2L_155637_155638 chr2L_155424_155429;chr2L_155638_155645 98.72 98.72 98.36 97.54 97.26 98.28 99.28 98.04 98.73 100.00 98.51 98.18 100.00 98.51 96.10 98.02 100.00 98.67 98.70 98.10 100.00 95.83 98.86 98.08 100.00 100.00 98.78 97.14 97.92 100.00 100.00 98.11 98.08 99.04 100.00 100.00 98.88 98.44 100.00 98.90 98.00 98.37 95.83 96.39 97.14 99.03 96.19 100.00 96.94 100.00 98.85 100.00 100.00 99.07 98.82 100.00 98.25 100.00 K alternative_acceptor RpL27A,E_chr2L_4457411_4457977,I_chr2L_4458058_4458120 chr2L - chr2L_4457290_4457374;chr2L_4457275_4457374 chr2L_4457319_4457374 chr2L_4457375_4457410;chr2L_4457188_4457274 0.55 0.43 0.63 0.60 0.41 0.66 1.12 0.51 0.50 1.19 1.14 0.61 0.66 0.22 0.29 0.56 0.26 0.43 0.48 0.66 0.83 0.50 0.38 0.38 1.11 1.50 0.43 0.69 13.65 0.75 0.59 1.07 0.30 0.57 0.56 2.66 0.55 0.37 0.25 0.48 1.97 0.42 0.44 0.32 0.36 0.88 0.20 1.04 0.57 0.69 0.32 0.53 0.45 0.40 0.55 0.24 0.37 0.81 K jcn_only_AD Bmcp,RI_chr3L_11714462_11715104 chr3L + chr3L_11714211_11714416 chr3L_11714292_11714416 chr3L_11714417_11714461;chr3L_11714027_11714210 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 94.74 97.47 100.00 100.00 100.00 97.75 100.00 100.00 100.00 100.00 98.36 98.46 100.00 100.00 100.00 100.00 100.00 100.00 98.61 100.00 100.00 100.00 100.00 99.02 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention MRP,I_chr2L_12727117_12729243,F_chr2L_12727117_12736035 chr2L + chr2L_12727117_12728020 chr2L_12727116_12727117;chr2L_12728020_12728021 chr2L_12727017_12727116;chr2L_12728021_12728086 5.98 4.88 8.11 18.06 4.44 7.32 7.14 13.08 7.93 0.00 26.32 10.34 10.14 8.06 7.46 7.87 10.77 3.33 7.14 2.97 13.89 10.00 5.06 5.98 3.30 10.53 7.63 11.63 3.70 8.20 7.14 0.00 5.41 6.67 4.76 8.00 4.72 2.41 2.11 4.64 2.53 7.35 5.56 1.24 0.00 3.33 0.00 6.67 8.33 1.92 3.73 6.12 0.00 1.67 9.09 1.72 1.84 1.92 K intron_retention Oatp74D,I_chr3L_17500359_17500724 chr3L + chr3L_17503635_17503698 chr3L_17503634_17503635;chr3L_17503698_17503699 chr3L_17503491_17503634;chr3L_17503699_17503875 5.15 2.34 6.38 7.77 6.25 9.23 9.71 5.15 6.28 0.00 6.06 4.48 5.48 10.00 7.14 6.49 3.45 4.00 14.04 8.38 6.67 7.17 3.49 3.20 1.59 4.69 5.00 8.96 2.27 5.41 6.67 3.77 5.77 7.22 6.25 4.76 4.86 2.50 2.81 5.65 8.82 6.98 5.56 1.41 12.70 2.13 3.21 13.16 8.80 2.54 3.94 4.84 2.47 3.54 2.50 4.13 3.38 2.38 K intron_retention CG1416,I_chr2L_21758100_21758179,I_chr2L_21758143_21758183,I_chr2L_21758143_21758209 chr2L + chr2L_21758143_21758183 chr2L_21758142_21758143;chr2L_21758183_21758184 chr2L_21758116_21758142;chr2L_21758184_21758279 100.00 100.00 100.00 99.46 100.00 99.12 99.54 100.00 99.70 100.00 100.00 100.00 100.00 100.00 100.00 99.69 100.00 100.00 100.00 99.26 100.00 98.88 99.48 99.36 100.00 100.00 99.47 99.42 100.00 100.00 100.00 99.21 100.00 99.52 100.00 100.00 100.00 100.00 100.00 99.47 100.00 99.65 100.00 100.00 100.00 100.00 100.00 99.44 99.67 100.00 100.00 99.25 100.00 100.00 100.00 99.39 99.60 99.59 K alternative_acceptor slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,I_chr2R_20289332_20290093 chr2R - chr2R_20288968_20289185 chr2R_20289009_20289185 chr2R_20289186_20289285;chr2R_20288868_20288967 94.55 100.00 95.83 87.34 96.77 94.59 97.18 96.00 89.08 93.10 97.44 92.21 94.55 100.00 94.12 93.67 91.67 100.00 93.10 97.06 85.71 82.05 96.15 97.22 100.00 90.57 95.45 90.32 91.89 96.77 95.31 100.00 90.00 96.70 94.44 97.06 95.24 97.06 100.00 93.94 95.83 90.53 97.56 91.67 92.31 84.62 95.00 94.12 93.68 93.33 94.44 95.24 87.50 91.67 88.57 96.43 84.00 96.67 K alternative_acceptor cic,RI_chr3R_16122222_16123529 chr3R + chr3R_16122222_16123529;chr3R_16122222_16124105 chr3R_16122222_16122818 chr3R_16122122_16122221;chr3R_16124106_16124254 2.94 1.77 2.06 3.78 1.20 1.20 3.39 3.11 2.68 6.35 2.74 1.83 2.60 2.56 1.50 6.33 2.22 1.59 2.35 2.22 1.01 18.57 4.21 2.34 3.45 6.32 4.85 14.02 12.68 9.00 2.08 6.25 12.20 2.17 3.75 11.72 2.94 3.33 3.72 5.70 9.80 1.83 1.32 7.14 9.76 5.56 1.69 8.86 2.15 1.67 3.03 2.78 2.44 2.90 1.61 3.28 2.27 6.67 K intron_retention shot,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9753001_9753565 chr2R_9753000_9753001;chr2R_9753565_9753566 chr2R_9752056_9753000;chr2R_9753566_9753631 0.76 1.85 0.65 1.37 0.00 0.00 2.01 1.64 1.23 0.98 2.04 0.99 0.00 0.00 0.63 2.75 0.00 0.00 1.35 1.08 0.00 1.63 1.53 1.47 0.76 0.83 0.53 1.55 0.00 0.68 1.66 0.00 0.00 1.91 1.03 1.85 0.00 0.82 0.00 0.53 0.00 0.24 1.43 1.60 0.76 1.77 0.00 1.23 0.67 0.62 0.81 0.00 0.00 0.00 0.51 0.00 0.98 0.00 K intron_retention Ptp61F,RI_chr3L_1345162_1345493 chr3L - chr3L_1342634_1344403 chr3L_1342633_1342634;chr3L_1344403_1344404 chr3L_1342623_1342633;chr3L_1344404_1344529 59.85 55.17 60.27 72.45 71.43 47.69 91.55 63.33 67.86 73.33 87.18 68.48 58.00 58.33 70.59 50.00 73.17 72.73 59.02 67.52 89.74 67.31 66.27 51.19 70.59 71.19 58.95 62.32 57.00 63.22 57.63 41.30 76.92 53.33 55.56 77.78 73.63 64.29 56.84 49.46 69.81 57.03 63.16 65.33 47.46 50.46 48.81 50.69 57.43 45.88 47.73 50.00 59.57 39.29 60.94 48.33 56.63 59.85 K intron_retention Lmpt,CG11915,CG33256,I_chr3L_16904612_16905228,I_chr3L_16904980_16905228 chr3L + chr3L_16890729_16905228 chr3L_16890728_16890729;chr3L_16905228_16905229 chr3L_16890484_16890728;chr3L_16905229_16905328 1.89 0.00 9.09 0.00 0.00 0.00 5.88 0.00 2.60 3.33 NA 6.45 NA 0.00 0.00 0.00 0.00 NA 0.00 2.56 14.29 7.06 3.08 1.89 0.00 NA 1.96 3.85 0.00 7.14 2.94 NA 5.56 4.76 6.67 6.67 2.27 3.92 2.50 0.00 0.00 5.56 NA 2.33 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 NA 0.00 4.55 0.00 0.00 NA K intron_retention dom,I_chr2R_17217595_17218598,snoRNA:Psi18S-1389a,snoRNA:Psi18S-1389b,I_chr2R_17228865_17228924 chr2R + chr2R_17221352_17221878 chr2R_17221351_17221352;chr2R_17221878_17221879 chr2R_17219255_17221351;chr2R_17221879_17222097 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 3.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG5973,I_chr2L_7441485_7443583,I_chr2L_7443388_7443583 chr2L + chr2L_7440963_7443583;chr2L_7440852_7443583;chr2L_7441757_7443583 chr2L_7440959_7443583 chr2L_7443584_7443683;chr2L_7440710_7440851 64.06 65.85 71.74 66.67 61.82 53.85 58.82 63.20 62.76 53.85 70.83 58.18 63.83 50.79 46.05 67.46 68.18 69.23 72.22 61.92 67.27 78.57 62.20 48.39 78.26 60.00 71.93 NA NA 71.43 45.65 76.00 70.37 58.23 80.77 51.02 59.52 NA 74.00 64.29 NA 59.01 62.50 NA 60.00 72.55 71.88 50.00 59.31 62.67 74.29 66.67 57.78 80.95 60.26 76.19 71.15 71.43 K alternative_donor CG11248 chr3L + chr3L_21673324_21673399;chr3L_21673253_21673399 chr3L_21673333_21673399 chr3L_21673400_21675533;chr3L_21673237_21673252 50.00 NA NA NA NA NA NA 42.86 57.14 NA NA 80.00 NA NA NA 50.00 NA NA NA 16.67 NA NA NA NA NA 40.00 28.57 NA NA NA NA NA NA 57.14 NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA K cassette Hrb98DE,RI_chr3R_24429041_24431183 chr3R + chr3R_24429041_24431183;chr3R_24429041_24429782 chr3R_24429041_24429329;chr3R_24429421_24429782,chr3R_24429421_24431183 chr3R_24429330_24429420 chr3R_24428941_24429040;chr3R_24431184_24431283 99.74 99.67 100.00 100.00 100.00 100.00 99.73 99.78 99.84 100.00 100.00 99.78 96.90 99.60 100.00 100.00 99.57 100.00 100.00 99.86 100.00 99.76 99.12 99.73 99.55 99.27 99.72 99.70 91.91 99.84 99.65 99.52 99.50 99.79 99.48 100.00 99.73 99.61 99.48 99.56 98.96 99.85 100.00 99.75 100.00 99.88 98.92 99.50 99.83 100.00 99.78 99.60 99.25 100.00 99.69 99.74 99.72 99.53 K intron_retention Rm62,I_chr3R_1828444_1829394,I_chr3R_1828476_1829394 chr3R - chr3R_1828821_1829394 chr3R_1828820_1828821;chr3R_1829394_1829395 chr3R_1828656_1828820;chr3R_1829395_1829494 49.08 52.63 50.00 50.00 56.25 NA 85.71 68.18 51.22 37.04 64.00 69.57 69.23 56.25 65.00 42.86 66.67 53.85 76.47 57.58 57.14 100.00 44.74 24.32 31.25 NA 39.13 40.00 25.00 38.89 29.63 NA 23.17 66.67 33.33 26.32 53.33 45.00 38.24 50.00 27.59 54.17 45.45 48.15 27.27 58.33 42.86 45.71 50.00 29.41 46.15 52.63 27.59 26.32 73.33 33.33 50.00 33.33 N intron_retention CG16971,CG33229,I_chr3L_225856_225909,RI_chr3L_225919_226004,I_chr3L_229245_230186 chr3L + chr3L_225543_225725 chr3L_225542_225543;chr3L_225725_225726 chr3L_225537_225542;chr3L_225726_225849 16.29 17.02 26.92 100.00 15.38 25.00 17.54 20.00 10.34 20.00 8.00 17.95 18.18 14.29 9.76 18.52 15.91 10.81 18.87 10.28 14.89 16.35 6.58 18.18 22.22 43.48 100.00 12.28 12.50 10.53 18.18 NA 19.44 19.40 NA 20.45 8.14 13.16 14.29 13.98 NA 21.92 22.86 9.09 NA 6.90 NA 16.22 22.22 NA NA 9.30 NA NA 12.73 NA 10.53 NA K alternative_donor Syx4,I_chrX_2635555_2635621,I_chrX_2636831_2636971 chrX - chrX_2633579_2633742;chrX_2633579_2635455 chrX_2633579_2633652 chrX_2633330_2633578;chrX_2635456_2635529 0.00 0.00 1.59 0.00 0.00 0.00 1.61 1.02 0.93 0.00 0.00 2.25 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG8920 chr2R + chr2R_16213043_16213121 chr2R_16213043_16213100 chr2R_16212894_16213042;chr2R_16213122_16213478 100.00 100.00 96.00 97.14 100.00 100.00 96.67 100.00 97.96 91.67 100.00 100.00 100.00 100.00 95.00 100.00 100.00 94.12 100.00 97.78 92.86 100.00 100.00 96.30 100.00 100.00 100.00 100.00 95.24 92.86 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 96.67 96.43 97.06 100.00 100.00 100.00 96.00 95.65 100.00 100.00 N alternative_donor myoglianin,RI_chr4_712986_714006,E_chr4_716066_716347,RI_chr4_716066_716482,RI_chr4_716153_716613,E_chr4_716172_716351 chr4 - chr4_715043_716708;chr4_715043_716482;chr4_715043_716613;chr4_715043_715839 chr4_715043_716322 chr4_714007_715042;chr4_716709_716712 11.11 11.11 0.00 28.00 25.00 12.50 19.23 41.38 19.51 0.00 0.00 29.17 20.00 27.78 0.00 36.84 16.67 11.11 21.43 31.82 0.00 0.00 30.00 0.00 20.00 0.00 16.67 0.00 0.00 20.00 27.27 NA 0.00 31.03 16.67 0.00 20.00 0.00 0.00 11.11 0.00 19.05 25.00 11.11 NA 0.00 0.00 0.00 25.93 0.00 9.09 22.22 0.00 0.00 20.00 33.33 0.00 0.00 K intron_retention mmd chrX - chrX_15854946_15856018 chrX_15854945_15854946;chrX_15856018_15856019 chrX_15854903_15854945;chrX_15856019_15856024 44.96 NA NA NA NA NA 60.00 25.00 42.86 NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 47.06 NA NA NA NA NA NA NA NA NA K alternative_acceptor RpL8,I_chr3L_2587513_2587750,I_chr3L_2587600_2587750,RI_chr3L_2587690_2587750,I_chr3L_2589746_2592161 chr3L + chr3L_2587514_2587717;chr3L_2587514_2587575 chr3L_2587514_2587750 chr3L_2587500_2587513;chr3L_2587751_2587850 99.85 99.88 99.91 99.93 99.97 100.00 99.84 99.88 99.92 99.92 99.97 99.94 99.80 99.90 99.95 99.93 99.94 99.94 99.92 99.93 99.90 99.64 99.76 99.84 99.91 99.89 99.79 99.81 99.78 99.85 99.75 99.87 99.77 99.85 99.64 99.60 99.85 99.83 99.87 99.91 99.64 99.88 99.82 99.74 99.86 99.76 99.76 99.85 99.81 99.77 99.43 99.81 99.80 99.28 99.91 99.85 99.85 99.80 K jcn_only_AD kuk chr3R + chr3R_12906028_12908385 chr3R_12906079_12908385 chr3R_12908386_12908865;chr3R_12905959_12906027 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.17 98.44 97.30 99.13 98.41 100.00 100.00 99.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.92 100.00 100.00 100.00 100.00 100.00 99.11 100.00 100.00 99.04 99.09 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 98.29 100.00 98.84 100.00 98.61 100.00 100.00 100.00 100.00 100.00 K intron_retention ifc,I_chr2L_5986893_5987347,RI_chr2L_5987175_5987347,noncoding_1271 chr2L + chr2L_5986893_5987615 chr2L_5986892_5986893;chr2L_5987615_5987616 chr2L_5986793_5986892;chr2L_5987616_5987779 3.43 3.43 2.88 4.69 3.45 2.63 2.95 2.65 2.92 4.49 1.08 2.96 1.61 3.07 3.91 5.64 3.85 7.00 3.32 4.24 3.77 4.50 4.46 4.89 3.42 1.77 4.82 6.74 3.51 3.91 3.37 1.04 3.50 4.12 3.59 3.79 4.07 2.90 4.10 3.42 2.90 2.86 2.37 4.14 1.52 2.70 1.05 6.00 4.26 3.60 2.79 5.81 2.15 0.73 3.91 2.86 1.46 1.16 K intron_retention unc-13,I_chr4_897077_897142,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_897081_897142 chr4_897080_897081;chr4_897142_897143 chr4_896922_897080;chr4_897143_897242 2.41 0.00 0.00 7.50 0.00 0.00 7.69 9.62 5.97 NA 0.00 6.90 0.00 0.00 8.70 5.26 12.00 0.00 6.06 0.00 NA 13.25 6.67 0.00 13.79 2.94 3.85 NA 20.00 0.00 2.38 NA 5.71 2.44 0.00 16.67 8.33 NA 0.00 0.00 NA 7.84 0.00 0.00 NA 0.00 NA 0.00 2.38 NA 2.94 7.14 NA NA 0.00 NA 0.00 NA K intron_retention eIF2B-beta,RI_chrX_2598807_2598852 chrX + chrX_2598807_2598869 chrX_2598806_2598807;chrX_2598869_2598870 chrX_2598707_2598806;chrX_2598870_2598952 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor l(2)k01209,I_chr2R_13308079_13310771,I_chr2R_13309452_13310771,RI_chr2R_13310877_13311160 chr2R + chr2R_13309417_13311160;chr2R_13309452_13311160;chr2R_13308079_13311160 chr2R_13308486_13311160 chr2R_13311161_13311260;chr2R_13307979_13308078 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor G-salpha60A chr2R + chr2R_19830349_19831752;chr2R_19830125_19831752 chr2R_19830338_19831752 chr2R_19831753_19832263;chr2R_19830091_19830124 6.82 16.67 3.70 5.08 7.41 16.67 5.17 4.65 2.27 NA 9.52 6.25 4.35 2.78 5.26 2.00 5.00 11.76 5.41 2.63 7.41 23.08 0.00 3.85 7.69 12.00 18.75 0.00 26.32 NA 6.67 NA 30.00 6.82 NA 25.00 3.17 11.76 8.00 22.73 NA 4.92 4.55 8.33 15.38 14.29 4.35 NA 7.27 0.00 11.11 7.41 7.69 NA 5.71 9.09 0.00 NA K alternative_last_exon dlg1,I_chrX_11298230_11299306 chrX + chrX_11294866_11299306 chrX_11294866_11296739 chrX_11299307_11299456 chrX_11296740_11296894 chrX_11294821_11294865 0.00 0.00 1.43 1.29 0.00 0.00 0.00 1.16 0.99 0.00 0.00 1.03 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.87 0.00 0.00 0.00 0.00 1.47 1.59 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 1.14 4.00 0.00 0.00 0.00 0.00 1.09 0.00 4.76 0.00 K jcn_only_AD RpLP0 chr3L + chr3L_22069237_22069347 chr3L_22069287_22069347 chr3L_22069348_22069440;chr3L_22069220_22069236 0.20 0.19 0.07 0.06 0.20 0.17 0.14 0.08 0.13 0.19 0.09 0.24 0.04 0.04 0.08 0.12 0.19 0.07 0.03 0.05 0.16 0.60 0.28 0.82 0.36 0.07 0.52 1.03 0.20 0.26 0.41 0.89 0.00 0.02 0.38 0.33 0.48 0.39 0.12 0.48 0.27 0.09 0.18 0.64 0.51 0.00 0.38 0.00 0.24 0.17 0.51 0.83 0.10 0.32 0.21 0.49 0.22 0.35 K jcn_only_AA CG4068 chrX - chrX_4822163_4822249 chrX_4822166_4822249 chrX_4822250_4823341;chrX_4821232_4822162 91.20 88.76 91.49 89.66 90.59 89.47 93.58 91.09 91.75 90.18 92.86 91.76 92.90 89.62 92.83 90.40 90.91 87.72 88.95 91.20 90.61 93.52 94.40 92.99 94.57 89.66 91.98 93.33 91.49 91.37 92.36 91.89 94.34 87.80 92.66 90.91 92.55 90.27 92.04 89.22 88.46 90.09 91.03 89.85 90.00 92.73 93.18 93.10 88.89 95.08 87.22 92.38 88.71 83.78 88.02 89.47 96.00 92.68 N intron_retention CG2076 chrX + chrX_10985226_10985757 chrX_10985225_10985226;chrX_10985757_10985758 chrX_10985084_10985225;chrX_10985758_10985890 21.21 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.15 NA NA NA NA NA NA 27.27 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette Rm62 chr3R - chr3R_1830849_1833758 chr3R_1830849_1831671;chr3R_1831825_1833758 chr3R_1831672_1831824 chr3R_1829739_1830848;chr3R_1833759_1834028 0.47 0.41 1.05 0.17 0.42 0.29 0.25 0.18 0.50 0.58 0.36 0.36 0.42 0.29 0.44 0.45 0.74 0.56 0.52 0.35 0.33 12.00 0.62 0.61 0.77 0.24 0.73 0.34 0.57 0.43 0.27 0.26 0.25 0.51 0.81 1.05 0.87 0.15 0.53 0.47 0.47 0.65 0.30 1.04 0.21 0.36 0.61 0.68 0.61 0.68 0.56 0.46 0.56 0.78 0.66 0.66 0.29 0.18 K jcn_only_AD Taf6 chr3L + chr3L_19594248_19594309 chr3L_19594250_19594309 chr3L_19594310_19594484;chr3L_19594013_19594247 19.44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 13.79 NA 18.18 NA NA NA 25.00 NA NA NA NA NA NA NA K alternative_donor CG4589,I_chr2R_20402394_20402462,I_chr2R_20402394_20402706 chr2R - chr2R_20402394_20402809;chr2R_20402394_20402785 chr2R_20402394_20402753 chr2R_20402294_20402393;chr2R_20402810_20402813 92.31 NA 90.00 88.89 NA 100.00 91.67 100.00 92.31 NA 100.00 100.00 100.00 100.00 87.50 92.86 80.00 80.00 88.89 92.31 100.00 NA NA NA NA 100.00 NA NA 80.00 NA 100.00 NA 85.71 100.00 NA NA NA NA NA 80.00 NA 91.67 85.71 NA 100.00 100.00 NA 100.00 100.00 NA NA NA NA NA 85.71 NA NA 83.33 K alternative_acceptor fax chr3L - chr3L_16398937_16400120 chr3L_16398946_16400120 chr3L_16400121_16400459;chr3L_16398602_16398936 78.45 82.93 75.61 83.93 72.34 75.61 37.93 76.09 79.38 72.73 77.42 86.25 77.27 84.62 75.47 74.42 70.27 75.68 82.50 84.38 70.00 78.45 72.50 80.15 87.21 78.79 78.26 88.51 77.27 79.78 80.43 75.00 81.82 75.38 80.85 90.36 79.19 78.26 80.77 76.72 83.67 78.16 77.50 80.65 81.25 81.58 73.08 88.57 73.44 78.42 83.67 82.76 69.35 85.14 84.75 81.69 72.22 76.92 K cassette CG4449,RI_chr3R_19076263_19076888 chr3R - chr3R_19076263_19076888;chr3R_19076260_19076888 chr3R_19076263_19076321,chr3R_19076260_19076321;chr3R_19076825_19076888 chr3R_19076322_19076824 chr3R_19076163_19076259;chr3R_19076889_19076982 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 94.44 95.24 96.67 100.00 100.00 100.00 100.00 100.00 100.00 97.14 96.77 100.00 100.00 100.00 94.12 88.00 95.65 93.75 95.00 100.00 96.88 95.24 86.96 96.77 100.00 96.00 95.00 95.83 97.50 100.00 100.00 95.00 96.30 100.00 96.67 97.67 100.00 100.00 100.00 93.75 94.74 100.00 100.00 100.00 100.00 K intron_retention CG1902,CG30000,I_chr2R_5495525_5495581 chr2R + chr2R_5491271_5491351 chr2R_5491270_5491271;chr2R_5491351_5491352 chr2R_5491228_5491270;chr2R_5491352_5491685 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.36 98.99 100.00 98.31 100.00 96.30 97.06 100.00 100.00 100.00 97.50 97.22 100.00 100.00 98.70 98.39 96.88 100.00 100.00 98.36 93.10 97.96 98.39 100.00 100.00 100.00 98.18 100.00 100.00 98.57 97.73 98.21 100.00 100.00 98.72 100.00 100.00 100.00 98.28 100.00 97.44 100.00 100.00 98.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K mutually_exclusive CG17838 chr3R + chr3R_16618278_16620860,chr3R_16620997_16622865 chr3R_16618278_16619437,chr3R_16619574_16622865 chr3R_16620861_16620996 chr3R_16619438_16619573 chr3R_16618036_16618277;chr3R_16622866_16622999 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 100.00 77.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 K alternative_donor None chrU - chrU_4029374_4029489;chrU_4029374_4029436 chrU_4029374_4029432 0.75 0.00 1.09 0.65 0.89 1.15 0.00 0.57 0.74 0.79 0.00 0.58 0.00 1.39 0.91 0.00 0.00 0.00 1.08 0.94 1.27 2.48 0.48 0.78 0.00 0.00 0.00 0.00 2.97 0.78 1.06 0.75 1.11 0.68 0.00 0.00 0.47 1.57 1.39 1.52 0.86 0.45 0.00 0.75 0.77 1.82 1.27 1.51 0.55 0.00 0.00 1.09 0.97 1.61 0.00 0.00 0.93 0.51 K intron_retention alpha-Cat,I_chr3L_23319861_23321813,I_chr3L_23327841_23328002 chr3L - chr3L_23312575_23318741 chr3L_23312574_23312575;chr3L_23318741_23318742 chr3L_23312334_23312574;chr3L_23318742_23318923 0.00 0.00 0.00 0.00 0.00 0.00 2.15 2.06 1.06 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpS13,RI_chr2L_8364126_8364208,I_chr2L_8364128_8364191 chr2L - chr2L_8364126_8364187 chr2L_8364125_8364126;chr2L_8364187_8364188 chr2L_8364028_8364125;chr2L_8364188_8364315 0.07 0.06 0.05 0.04 0.02 0.05 0.05 0.03 0.07 0.14 0.05 0.08 0.07 0.02 0.08 0.06 0.05 0.04 0.02 0.06 0.05 0.07 0.07 0.06 0.05 0.05 0.25 0.37 0.18 0.12 0.08 0.06 0.07 0.06 0.11 0.13 0.13 0.13 0.07 0.07 0.12 0.06 0.04 0.09 0.11 0.11 0.10 0.05 0.13 0.19 0.10 0.11 0.13 0.08 0.03 0.15 0.11 0.06 K alternative_donor Btk29A,I_chr2L_8262681_8277370,I_chr2L_8298341_8298782,I_chr2L_8298341_8300884 chr2L - chr2L_8298341_8300817;chr2L_8298341_8300714 chr2L_8298341_8300505 chr2L_8298241_8298340;chr2L_8300818_8301040 80.00 88.24 85.71 75.68 93.33 76.47 74.29 68.57 79.07 81.25 63.64 77.14 70.83 80.00 64.00 66.67 75.00 86.21 80.95 86.00 77.78 90.91 82.50 78.79 82.61 79.17 82.86 68.18 83.33 81.58 86.96 80.00 91.11 81.82 85.00 87.80 83.33 76.00 76.32 80.85 80.77 69.77 80.00 82.05 94.44 84.00 73.68 83.10 71.43 76.00 74.29 56.25 85.71 56.25 64.71 78.95 63.16 85.71 K intron_retention CG8111 chr3L - chr3L_7907752_7907807 chr3L_7907751_7907752;chr3L_7907807_7907808 chr3L_7907161_7907751;chr3L_7907808_7908195 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Msp-300,I_chr2L_5154189_5154247,I_chr2L_5197634_5197866 chr2L + chr2L_5140922_5141652 chr2L_5140922_5141310;chr2L_5141518_5141652 chr2L_5141311_5141517 chr2L_5140913_5140921;chr2L_5141653_5141871 38.63 NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 27.27 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA I_chr3L_212783_212843,Kaz1-ORFB,Kaz1-ORFA_Kaz1-ORFB,CG13877 chr3L + chr3L_218196_218282 chr3L_218196_218279 chr3L_218127_218195;chr3L_218283_218658 72.00 78.57 78.26 NA NA NA 65.79 78.72 61.11 NA NA 80.85 NA 68.57 71.05 78.26 72.22 74.07 64.71 66.67 NA NA 79.17 71.05 NA 76.92 70.37 NA NA 70.00 67.74 85.71 NA 71.79 72.73 NA NA NA 68.18 62.86 65.00 74.47 82.14 NA NA 62.50 89.36 NA 61.90 78.38 76.47 NA NA 82.05 70.37 70.97 81.25 NA K intron_retention CG31716,I_chr2L_10397648_10398034 chr2L + chr2L_10402563_10402630 chr2L_10402562_10402563;chr2L_10402630_10402631 chr2L_10402407_10402562;chr2L_10402631_10402885 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 1.30 3.03 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 2.11 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention plexA,I_chr4_1035153_1035403,I_chr4_1035473_1035591,RI_chr4_1036247_1047588,RI_chr4_1040642_1047395,RF_chr4_1044307_1047399 chr4 - chr4_1035355_1035403 chr4_1035354_1035355;chr4_1035403_1035404 chr4_1035209_1035354;chr4_1035404_1035471 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 13.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD None chrU + chrU_1352865_1369155 chrU_1362784_1369155 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD cul-2,I_chr2L_21659273_21659705,I_chr2L_21659761_21659839,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21659273_21659839 chr2L_21659761_21659839 chr2L_21659840_21659939;chr2L_21659173_21659272 0.69 0.87 1.03 3.03 1.27 2.08 0.39 0.78 0.48 0.00 1.22 0.48 6.90 0.00 0.00 0.90 0.00 1.22 0.00 0.49 0.00 0.34 1.23 0.00 0.00 0.00 1.47 1.03 0.96 0.80 0.00 2.04 0.00 0.66 0.00 0.69 0.00 0.00 2.89 1.33 1.04 0.52 0.00 0.58 1.96 1.19 1.09 0.00 0.56 0.00 1.06 0.85 1.64 1.33 0.00 2.83 0.00 2.78 K jcn_only_AD I_chr3R_22696095_22697413,Rb97D chr3R - chr3R_22699721_22699792 chr3R_22699721_22699788 chr3R_22699582_22699720;chr3R_22699793_22700512 63.39 70.21 48.84 57.41 59.38 54.84 50.98 60.94 56.25 59.18 NA 59.42 72.41 65.00 65.38 65.38 NA 52.63 74.29 58.89 55.56 65.31 66.67 52.73 58.14 55.56 63.83 82.86 73.33 68.18 62.96 56.52 65.31 45.28 62.07 65.12 64.08 75.71 65.79 60.81 NA 59.49 52.38 75.47 69.39 65.91 50.91 66.67 56.52 72.88 67.21 72.22 61.76 72.88 57.14 68.00 75.00 53.33 K jcn_only_AD TBPH,I_chr2R_19748981_19749882,I_chr2R_19748981_19749921,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19748984_19749899;chr2R_19748984_19749783 chr2R_19748984_19750012 chr2R_19748884_19748983;chr2R_19750013_19750013 30.52 NA NA 34.62 NA 20.83 16.13 38.89 25.00 NA NA 36.36 NA NA NA 28.00 NA NA NA 34.48 35.00 NA NA NA NA NA NA NA NA NA 57.58 NA NA 31.03 NA NA NA NA NA 30.00 NA 29.73 NA NA NA NA NA NA 29.63 NA NA NA NA NA 22.22 NA NA 35.00 K jcn_only_AD lig,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3955872_3957375;chr2R_3955586_3957375;chr2R_3955517_3957375 chr2R_3955788_3957375 chr2R_3957376_3957784;chr2R_3955509_3955516 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 NA NA NA 0.00 NA NA 0.00 0.00 1.05 4.17 0.00 0.00 0.00 NA 0.00 NA NA 1.49 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA 0.00 NA NA 0.00 K cassette CG32549,RI_chrX_18301919_18303082,I_chrX_18302976_18303916 chrX - chrX_18301919_18303082;chrX_18301919_18303916 chrX_18301919_18302550;chrX_18302893_18303082,chrX_18302893_18303916 chrX_18302551_18302892 chrX_18301857_18301918;chrX_18303917_18304016 100.00 NA NA NA NA NA 80.00 100.00 100.00 NA NA 83.33 NA NA NA NA NA NA NA 62.50 NA 100.00 100.00 100.00 100.00 NA 80.00 NA NA NA NA NA NA 100.00 NA NA NA NA 80.00 85.71 NA 75.00 NA NA NA NA 100.00 NA 100.00 NA NA NA 100.00 NA NA NA 100.00 100.00 K alternative_donor Spp,Ets21C,rempA chr2L - chr2L_543350_543426 chr2L_543350_543415 chr2L_543282_543349;chr2L_543427_543492 100.00 100.00 100.00 98.91 97.96 100.00 98.46 98.48 100.00 100.00 98.41 100.00 100.00 100.00 98.44 100.00 100.00 100.00 100.00 100.00 98.33 98.90 100.00 100.00 100.00 100.00 99.05 100.00 98.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.12 99.24 98.57 100.00 100.00 100.00 100.00 98.15 98.77 100.00 94.44 98.06 99.24 100.00 100.00 100.00 99.13 100.00 100.00 99.37 97.22 K intron_retention kis,RI_chr2L_231035_231947,RI_chr2L_242745_242800,I_chr2L_242926_250756 chr2L - chr2L_215677_215772 chr2L_215676_215677;chr2L_215772_215773 chr2L_215034_215676;chr2L_215773_216007 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Rtc1,I_chrX_13652113_13652182,I_chrX_13653840_13653902 chrX + chrX_13652113_13652182 chrX_13652117_13652182 chrX_13652183_13652247;chrX_13652053_13652112 100.00 100.00 100.00 100.00 100.00 100.00 98.97 98.92 98.60 100.00 97.67 99.27 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 95.24 100.00 98.17 100.00 100.00 100.00 99.17 100.00 100.00 97.89 100.00 99.10 99.31 97.59 98.36 100.00 100.00 100.00 100.00 98.75 100.00 98.31 100.00 100.00 100.00 100.00 100.00 99.24 97.26 100.00 100.00 100.00 100.00 100.00 98.77 99.17 97.24 98.35 K multi_cassette Su(var)2-HP2 chr2R - chr2R_10499197_10504347 chr2R_10499197_10499285;chr2R_10503906_10504014;chr2R_10504267_10504347 chr2R_10499286_10503905;chr2R_10504015_10504266 chr2R_10499125_10499196;chr2R_10504348_10504372 88.00 89.47 92.31 90.70 86.67 95.45 92.59 92.73 98.39 91.67 93.75 85.71 90.00 81.25 83.33 92.73 96.15 90.91 96.88 84.21 94.74 89.29 83.33 83.33 80.95 96.00 85.71 80.00 84.00 87.50 90.32 53.33 75.68 89.29 84.00 80.00 88.00 90.00 75.00 86.49 91.67 88.89 86.21 88.89 85.71 92.86 66.67 88.10 92.45 78.57 87.88 92.86 85.71 83.33 87.50 88.89 80.00 71.43 K intron_retention CG4699 chr3R + chr3R_11624127_11624442 chr3R_11624126_11624127;chr3R_11624442_11624443 chr3R_11623809_11624126;chr3R_11624443_11624758 77.14 70.73 73.81 66.67 62.16 70.59 88.00 81.54 78.48 73.08 77.50 80.00 88.89 76.32 78.95 69.23 82.50 70.97 78.57 74.26 82.86 90.08 69.23 73.44 72.50 83.33 77.97 70.59 73.68 82.65 77.78 72.31 80.20 73.91 81.25 66.04 67.95 67.39 65.91 96.77 82.09 79.79 89.19 70.77 77.01 82.35 78.79 74.68 80.85 70.91 82.46 79.41 70.83 77.14 78.26 63.04 72.22 77.78 K alternative_acceptor pyd,I_chr3R_4689473_4690507,I_chr3R_4749124_4756437 chr3R - chr3R_4668562_4690507 chr3R_4689473_4690507 chr3R_4690508_4690607;chr3R_4668392_4668561 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA K intron_retention cbs,I_chr2R_9340506_9340593,I_chr2R_9340512_9340593 chr2R + chr2R_9340536_9340593 chr2R_9340535_9340536;chr2R_9340593_9340594 chr2R_9340296_9340535;chr2R_9340594_9340693 0.00 0.00 3.12 0.00 0.00 0.00 2.35 0.00 1.15 0.00 0.00 1.69 0.00 5.13 2.70 0.00 0.00 0.00 0.00 0.00 4.00 NA 3.92 0.00 0.00 0.00 12.50 0.00 0.00 0.00 3.28 0.00 0.00 3.28 0.00 0.00 0.00 3.12 0.00 0.00 4.17 4.05 0.00 0.00 2.78 3.28 2.70 0.00 1.72 0.00 0.00 0.00 NA 0.00 1.89 0.00 0.00 0.00 K intron_retention CG6701,RI_chr2R_9866896_9867532 chr2R - chr2R_9865086_9865149 chr2R_9865085_9865086;chr2R_9865149_9865150 chr2R_9864881_9865085;chr2R_9865150_9865334 0.92 2.60 1.18 6.34 0.00 1.54 2.70 1.96 3.35 0.00 2.35 4.08 2.30 3.30 4.35 4.14 3.12 0.00 1.90 1.16 0.00 0.00 0.92 0.00 0.00 2.90 7.14 10.17 2.13 0.00 0.00 0.00 0.00 1.35 0.00 3.39 1.75 0.00 0.00 0.00 0.00 2.94 1.32 0.83 0.00 0.00 0.00 0.00 1.47 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 3.33 K jcn_only_AD CG18812,I_chr2R_3617214_3617883,I_chr2R_3617214_3622585 chr2R - chr2R_3617214_3622881 chr2R_3617214_3617883 chr2R_3617147_3617213;chr2R_3622882_3623125 0.00 1.23 0.00 0.00 0.00 1.54 0.00 1.27 0.50 0.00 2.27 1.82 0.00 0.00 1.20 0.00 0.00 1.45 0.00 2.94 2.13 3.92 0.00 2.06 0.00 1.98 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 1.09 0.00 0.00 2.00 K intron_retention rl,I_chr2RHet_199154_201722,I_chr2RHet_199154_207044,RI_chr2RHet_203476_203577,RI_chr2RHet_203592_207044,I_chr2RHet_232696_247338,RI_chr2RHet_240197_247338 chr2RHet + chr2RHet_198760_198964 chr2RHet_198759_198760;chr2RHet_198964_198965 chr2RHet_198753_198759;chr2RHet_198965_199153 85.96 81.82 100.00 80.56 NA NA 90.70 76.32 85.71 NA NA 84.62 90.00 78.57 NA 86.21 NA NA 72.22 84.21 NA NA 100.00 NA NA 88.89 100.00 NA NA NA 81.82 NA NA 85.71 NA 100.00 NA NA NA 90.00 NA 84.62 NA 100.00 NA NA NA NA 75.86 NA 100.00 88.89 NA NA 72.73 NA 100.00 NA K jcn_only_AA Pld,RI_chr2R_2138358_2141112 chr2R + chr2R_2138358_2138634 chr2R_2138358_2138580 chr2R_2138258_2138357;chr2R_2138635_2139357 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 97.06 NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA K jcn_only_AD Ucp4A chrX + chrX_17739432_17739522;chrX_17739458_17739522;chrX_17739394_17739522 chrX_17739454_17739522 chrX_17739523_17739558;chrX_17739094_17739393 83.33 80.56 72.41 NA NA NA 90.00 65.22 86.67 NA NA 83.33 NA NA 73.08 52.38 NA 71.43 76.19 90.91 NA NA 89.86 81.40 69.23 NA 86.11 77.78 NA 84.00 62.50 90.32 84.62 86.11 80.85 62.79 81.58 75.00 87.50 84.31 92.00 79.55 90.48 96.15 87.10 88.37 85.71 79.49 83.33 75.86 84.48 78.26 88.89 86.49 80.65 77.08 86.49 NA K alternative_acceptor CG17224,RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605 chr2L - chr2L_3018018_3018163;chr2L_3018082_3018163;chr2L_3018038_3018163 chr2L_3018025_3018163 chr2L_3018164_3018185;chr2L_3017982_3018017 5.00 5.56 8.00 2.94 12.50 11.11 2.70 1.92 3.03 0.00 7.69 2.27 5.00 3.70 5.88 0.00 4.55 4.35 3.33 4.17 5.88 0.00 5.26 6.67 11.11 0.00 4.00 14.29 0.00 8.33 2.44 14.29 0.00 10.26 5.56 0.00 7.69 12.50 14.29 6.67 0.00 2.94 5.26 4.00 0.00 4.35 0.00 8.33 6.25 7.14 13.04 0.00 0.00 9.09 3.70 16.67 13.33 14.29 K intron_retention pan chr4 + chr4_128999_129066 chr4_128998_128999;chr4_129066_129067 chr4_128029_128998;chr4_129067_129408 100.00 100.00 100.00 97.56 100.00 100.00 97.06 100.00 98.28 87.50 91.67 100.00 100.00 95.00 100.00 97.67 100.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 95.83 NA 100.00 100.00 100.00 81.82 100.00 100.00 90.91 95.24 NA 100.00 100.00 94.44 NA 100.00 NA 100.00 98.08 NA 100.00 100.00 NA NA 95.83 NA 100.00 88.89 K jcn_only_AD Eip71CD chr3L + chr3L_15505454_15505575 chr3L_15505466_15505575 chr3L_15505576_15505836;chr3L_15505274_15505453 70.00 65.38 71.93 76.71 79.41 88.00 67.50 72.73 61.29 67.86 83.33 59.32 NA 72.41 82.98 69.49 84.38 70.00 66.67 64.21 79.49 54.05 73.91 56.92 63.04 58.62 66.67 81.48 67.86 75.00 76.74 64.71 59.26 73.68 73.08 69.39 65.17 71.83 61.90 70.53 70.27 60.00 71.43 67.33 70.00 72.22 70.93 65.91 55.38 81.25 65.43 70.49 65.52 66.67 65.45 74.51 72.97 76.81 K intron_retention kon chr2L - chr2L_18493154_18493499 chr2L_18493153_18493154;chr2L_18493499_18493500 chr2L_18491754_18493153;chr2L_18493500_18494528 0.00 NA 0.00 12.90 5.88 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 5.56 NA NA 0.00 0.00 0.00 NA 9.68 NA NA 0.00 0.00 NA 0.00 4.35 11.76 NA NA 3.70 NA NA 0.00 NA 0.00 8.33 NA 0.00 NA 7.41 NA NA NA 0.00 0.00 NA 8.33 NA NA NA 0.00 NA NA NA K intron_retention CG11448,I_chrX_1288748_1289115,RI_chrX_1289405_1289590 chrX + chrX_1288192_1288256 chrX_1288191_1288192;chrX_1288256_1288257 chrX_1287124_1288191;chrX_1288257_1288747 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 18.18 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor mfas,I_chr3R_7811954_7812017,I_chr3R_7818597_7818853,I_chr3R_7818607_7818853,RI_chr3R_7818607_7818970 chr3R - chr3R_7818575_7818970 chr3R_7818575_7818853 chr3R_7818507_7818574;chr3R_7818971_7818995 13.46 8.06 11.94 9.40 5.17 12.77 28.30 14.93 10.96 10.71 16.00 17.59 12.50 17.14 13.43 19.39 13.75 7.81 14.29 14.91 14.29 2.11 13.46 11.43 13.64 5.71 16.22 16.22 22.22 12.50 18.03 6.90 12.31 16.04 8.70 22.22 4.44 8.82 4.92 7.69 22.22 10.81 16.07 8.89 6.67 18.87 9.38 15.91 15.50 13.95 16.36 7.32 10.53 17.65 15.07 16.67 12.07 15.00 K intron_retention CG3209,RI_chr2R_19957766_19960227 chr2R + chr2R_19960485_19960550 chr2R_19960484_19960485;chr2R_19960550_19960551 chr2R_19960228_19960484;chr2R_19960551_19960985 0.56 0.00 0.00 2.37 0.56 0.52 0.00 0.00 0.47 0.00 0.97 1.34 1.32 0.00 0.41 0.00 0.00 0.00 0.00 0.26 1.08 1.06 0.00 1.36 0.00 0.93 1.43 3.21 0.88 0.00 0.50 0.61 0.99 0.77 0.00 1.82 0.43 0.00 1.12 0.77 1.24 0.52 0.00 0.60 1.26 0.00 0.00 0.79 0.68 0.63 0.00 0.56 0.00 0.88 0.00 0.65 1.13 1.16 K cassette CG1578,I_chrX_11705375_11705673,I_chrX_11705375_11707320,RI_chrX_11709573_11710335,I_chrX_11710380_11710454 chrX - chrX_11705375_11707320 chrX_11705375_11705684;chrX_11706637_11707320 chrX_11705685_11706636 chrX_11705275_11705374;chrX_11707321_11707420 91.03 84.51 94.44 56.36 93.02 92.16 86.96 85.71 88.89 87.80 84.21 86.46 75.00 91.67 92.73 94.87 78.05 82.98 90.00 83.48 92.11 72.86 91.35 91.86 92.59 90.70 80.00 86.36 88.89 88.89 84.75 97.78 95.70 88.31 90.74 94.37 91.47 91.25 90.18 89.62 83.67 93.07 88.57 94.29 91.03 97.18 93.06 95.79 92.16 87.50 95.06 90.91 92.73 92.45 94.55 93.10 92.00 100.00 K intron_retention CG18766,I_chr3R_23069667_23070256,I_chr3R_23069667_23070318,RI_chr3R_23069667_23070361,I_chr3R_23069667_23070365 chr3R - chr3R_23069667_23070911 chr3R_23069666_23069667;chr3R_23070911_23070912 chr3R_23069567_23069666;chr3R_23070912_23070951 58.54 90.00 46.15 58.06 66.67 41.67 61.54 75.00 58.54 NA 61.54 48.15 41.18 53.85 61.90 67.86 77.78 66.67 82.35 56.52 29.41 NA NA 60.00 NA NA NA NA NA NA 58.33 NA NA 62.50 NA NA NA NA NA 38.10 NA 52.94 50.00 60.00 NA NA NA NA 55.56 NA 66.67 NA NA NA 50.00 NA NA NA K jcn_only_AD RpS18,CG8908,EI_chr2R_16151918_16151997,I_chr2R_16151918_16152036,I_chr2R_16151938_16152065,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16151918_16151997;chr2R_16151942_16151997 chr2R_16151938_16151997 chr2R_16151998_16152066;chr2R_16151852_16151917 99.90 99.91 99.86 99.89 99.95 99.87 99.90 99.88 99.92 99.94 99.86 99.88 99.86 99.93 99.93 99.84 99.84 99.89 99.95 99.89 99.84 99.86 99.93 99.90 99.87 99.83 99.93 99.92 99.88 99.94 99.80 99.94 99.91 99.90 99.87 99.88 99.90 99.92 99.92 99.93 99.94 99.92 99.89 99.93 99.98 99.88 99.93 99.90 99.89 99.95 99.92 99.89 99.89 99.94 99.85 99.92 99.97 99.94 K intron_retention CPTI,I_chr2R_6360956_6361439,I_chr2R_6360956_6365128 chr2R - chr2R_6360956_6362759 chr2R_6360955_6360956;chr2R_6362759_6362760 chr2R_6360856_6360955;chr2R_6362760_6362826 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 5.56 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K jcn_only_AA Gpdh chr2L + chr2L_5947333_5948406 chr2L_5947333_5947856 chr2L_5947240_5947332;chr2L_5948407_5948574 100.00 100.00 NA 100.00 NA NA NA 97.14 100.00 NA NA 100.00 NA NA 100.00 90.00 NA 100.00 NA 96.43 NA NA NA NA NA NA NA NA NA NA 100.00 NA 91.67 100.00 NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA 96.43 NA 96.15 94.12 NA NA NA NA NA NA 95.45 NA 97.37 K intron_retention Sas-4,I_chr3R_2978972_2979025 chr3R + chr3R_2978975_2979025 chr3R_2978974_2978975;chr3R_2979025_2979026 chr3R_2977037_2978974;chr3R_2979026_2979125 5.56 0.00 12.50 12.50 0.00 NA NA 0.00 3.45 NA 0.00 3.33 14.29 NA 0.00 17.39 NA NA NA 10.00 NA NA 5.56 3.03 10.53 7.14 20.00 NA 61.54 NA 12.50 0.00 0.00 19.05 18.75 0.00 10.00 5.56 12.20 5.88 NA 18.52 NA 5.56 12.50 0.00 0.00 15.00 7.41 13.04 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Gug,R_chr3L_8444636_8444874,I_chr3L_8455244_8456103 chr3L + chr3L_8443558_8455071 chr3L_8443558_8444874;chr3L_8445229_8455071 chr3L_8444875_8445228 chr3L_8443524_8443557;chr3L_8455072_8455186 91.67 93.33 92.59 95.92 93.33 94.12 75.00 97.44 83.72 88.89 75.00 96.30 88.89 91.30 94.44 77.42 93.33 92.86 92.59 97.30 72.22 91.67 96.30 94.74 81.82 80.00 92.31 83.33 76.67 91.67 86.36 83.33 95.24 89.19 90.00 96.43 88.89 93.75 95.65 86.67 87.50 88.64 82.35 89.29 100.00 92.31 90.91 84.44 90.48 83.33 91.67 93.33 91.67 100.00 92.86 100.00 71.43 80.00 K intron_retention I_chr2R_4783150_4783708,Ggamma1,noncoding_5300 chr2R + chr2R_4789292_4789832 chr2R_4789291_4789292;chr2R_4789832_4789833 chr2R_4789223_4789291;chr2R_4789833_4790635 100.00 100.00 98.84 100.00 100.00 100.00 100.00 100.00 99.25 100.00 100.00 100.00 100.00 100.00 98.94 100.00 100.00 100.00 98.84 100.00 100.00 100.00 98.48 100.00 100.00 98.84 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 97.78 98.72 98.88 100.00 100.00 100.00 100.00 100.00 100.00 98.18 100.00 100.00 97.78 98.51 97.22 96.55 100.00 98.81 100.00 100.00 100.00 K intron_retention CG31716,I_chr2L_10397648_10398034 chr2L + chr2L_10399713_10399767 chr2L_10399712_10399713;chr2L_10399767_10399768 chr2L_10399595_10399712;chr2L_10399768_10400679 0.00 0.00 0.00 9.68 0.00 0.00 0.00 2.86 2.13 NA 0.00 4.65 9.38 11.11 0.00 0.00 4.55 0.00 0.00 1.92 0.00 0.00 12.90 8.70 0.00 0.00 22.73 NA 0.00 0.00 0.00 0.00 6.90 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 2.17 0.00 0.00 0.00 0.00 NA 2.38 2.44 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention Rab14,I_chr2L_14357104_14357340 chr2L + chr2L_14357455_14357519 chr2L_14357454_14357455;chr2L_14357519_14357520 chr2L_14357341_14357454;chr2L_14357520_14357700 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG12582 chr3R + chr3R_24495_24551 chr3R_24494_24495;chr3R_24551_24552 chr3R_24113_24494;chr3R_24552_24648 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 K cassette Jhebp29,RI_chr2R_20857941_20857992,RI_chr2R_20857941_20858127 chr2R + chr2R_20857941_20858127 chr2R_20857941_20857994;chr2R_20858072_20858127 chr2R_20857995_20858071 chr2R_20857841_20857940;chr2R_20858128_20858227 92.16 97.30 92.50 97.92 94.87 93.75 87.50 85.71 91.14 95.24 94.29 92.59 87.50 86.67 94.87 90.48 96.30 87.50 87.88 88.06 90.00 66.67 94.00 98.00 88.89 89.74 93.02 96.77 52.94 96.67 91.89 94.29 88.89 92.16 92.59 83.87 98.11 90.24 88.00 89.19 92.16 93.85 96.77 95.65 97.14 90.24 93.88 88.24 89.36 84.21 92.86 100.00 87.50 82.14 86.67 91.84 93.67 95.24 K cassette CG32549,RI_chrX_18301919_18303082,I_chrX_18302976_18303916 chrX - chrX_18301919_18303082;chrX_18301919_18303916 chrX_18301919_18302550;chrX_18302976_18303082,chrX_18302976_18303916 chrX_18302551_18302975 chrX_18301857_18301918;chrX_18303917_18304016 100.00 NA NA NA NA NA 75.00 NA 100.00 NA NA 80.00 NA NA NA NA NA NA NA 50.00 NA 100.00 100.00 NA 100.00 NA 80.00 NA NA NA NA NA NA 100.00 NA NA NA NA 75.00 80.00 NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA 100.00 NA NA NA 100.00 100.00 K jcn_only_AA CG9086,CEI_chrX_16859981_16861527,I_chrX_16861895_16862053 chrX - chrX_16857754_16861527 chrX_16859981_16861527 chrX_16861528_16861627;chrX_16857742_16857753 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 13.64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette PP2A-B' chr3R + chr3R_13993929_13997250;chr3R_13993590_13997250 chr3R_13993929_13995378,chr3R_13993590_13995378;chr3R_13995821_13997250 chr3R_13995379_13995820 chr3R_13993510_13993589;chr3R_13997251_13997425 99.14 99.02 98.96 99.34 98.65 100.00 100.00 95.00 99.49 100.00 100.00 98.25 98.59 100.00 100.00 99.07 100.00 98.55 100.00 99.64 100.00 97.83 98.24 98.51 99.05 100.00 99.21 98.57 98.41 100.00 98.80 98.95 99.48 99.30 98.95 99.12 99.50 98.50 98.79 99.10 99.07 98.87 98.25 100.00 99.14 99.22 99.24 99.43 99.40 98.95 99.29 100.00 100.00 98.88 98.91 99.15 99.21 99.03 K intron_retention Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045275_16045854 chr3L_16045274_16045275;chr3L_16045854_16045855 chr3L_16045255_16045274;chr3L_16045855_16045954 83.22 NA NA 90.00 NA NA 77.78 100.00 73.33 NA NA 66.67 72.73 NA NA 84.62 NA NA 80.00 81.82 NA 92.31 NA NA NA 80.00 88.89 NA NA NA NA NA 90.00 93.75 NA 63.64 NA NA NA NA NA 81.25 NA NA NA NA NA NA 100.00 NA NA NA NA NA 90.91 NA NA NA K jcn_only_AA Sap47,I_chr3R_11761076_11761674,I_chr3R_11761436_11761674,F_chr3R_11761635_11761698,E_chr3R_11761635_11761703 chr3R + chr3R_11761307_11761674;chr3R_11761307_11761698;chr3R_11761307_11761703 chr3R_11761307_11761561 chr3R_11761299_11761306;chr3R_11761704_11761774 0.00 NA NA NA NA NA 0.00 NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention CG42574,Hus1-like,I_chr3R_636510_637704 chr3R - chr3R_636510_637704 chr3R_636509_636510;chr3R_637704_637705 chr3R_636410_636509;chr3R_637705_637730 64.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 64.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG12163 chr3R - chr3R_1064920_1065213 chr3R_1064919_1064920;chr3R_1065213_1065214 chr3R_1064176_1064919;chr3R_1065214_1065341 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG3689 chr3L + chr3L_9405083_9406302 chr3L_9405083_9405254 chr3L_9404917_9405082;chr3L_9406303_9406402 17.65 17.65 20.22 18.40 12.35 15.19 30.00 20.00 24.69 13.24 21.82 20.62 31.65 20.25 17.02 25.00 21.74 18.29 17.82 21.47 29.79 16.47 28.43 15.27 22.39 20.51 19.67 17.50 16.28 15.25 23.15 10.69 14.38 19.21 16.47 16.00 20.41 18.75 14.17 17.51 13.19 21.25 20.83 27.06 11.03 14.29 15.79 11.42 22.29 16.81 16.67 14.42 20.22 13.33 15.53 16.30 12.73 13.82 K jcn_only_AD CG42507,Trl,I_chr3L_14745733_14745798,CI_chr3L_14750431_14753667,I_chr3L_14754175_14754238 chr3L - chr3L_14744876_14746433;chr3L_14744876_14746310 chr3L_14744876_14745798 chr3L_14744367_14744875;chr3L_14746434_14746571 5.08 7.32 11.32 7.46 5.00 8.89 8.11 6.06 8.64 15.56 2.86 4.41 NA 11.76 5.13 24.00 7.14 10.26 17.50 4.92 2.86 8.75 0.93 7.55 2.50 12.20 6.15 3.03 2.17 3.66 13.95 3.77 3.42 5.97 5.00 3.08 2.33 1.49 2.97 0.00 6.38 11.34 11.11 3.17 3.17 1.43 6.90 5.50 4.49 8.16 8.96 10.42 0.00 3.39 3.77 1.69 1.79 5.04 K intron_retention Nup358,I_chr3R_21078958_21079044,CG11857,CG11858,CG11859 chr3R + chr3R_21085155_21085215 chr3R_21085154_21085155;chr3R_21085215_21085216 chr3R_21084792_21085154;chr3R_21085216_21085704 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 K intron_retention Pk61C,CE_chr3L_129889_141769,I_chr3L_132531_133824,I_chr3L_133962_134014 chr3L + chr3L_132531_135457 chr3L_132530_132531;chr3L_135457_135458 chr3L_132462_132530;chr3L_135458_135842 27.78 27.78 18.18 24.14 30.00 41.18 40.00 30.95 28.00 NA 35.71 24.39 60.87 40.00 26.32 35.71 15.38 42.86 33.33 17.14 33.33 NA 32.00 29.41 NA 19.23 47.62 NA 25.00 28.57 36.36 NA 15.00 28.57 NA 22.22 20.69 NA 23.53 18.18 NA 27.78 37.50 20.00 NA NA 25.00 25.00 25.93 NA 35.00 NA NA NA 25.00 NA NA 11.11 K jcn_only_AD E(bx),I_chr3L_246324_246699 chr3L - chr3L_246324_246885;chr3L_246324_246438;chr3L_246324_246408;chr3L_246324_246794;chr3L_246324_246382;chr3L_246324_246427 chr3L_246324_246388 chr3L_246224_246323;chr3L_246886_246901 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.98 2.56 0.00 1.10 0.00 1.82 0.00 0.00 2.50 2.04 0.00 0.82 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 3.85 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 1.41 0.00 NA NA 0.00 NA NA NA K intron_retention Shawn_Tyler,CG14213 chrX + chrX_19533117_19533177 chrX_19533116_19533117;chrX_19533177_19533178 chrX_19532929_19533116;chrX_19533178_19533426 97.62 98.39 96.49 95.54 94.64 100.00 98.90 96.08 96.09 94.59 97.83 95.35 97.56 98.21 97.37 100.00 98.21 97.62 98.55 96.19 98.00 92.45 94.94 97.94 97.78 98.41 98.63 100.00 97.92 97.50 96.30 97.37 98.08 98.94 98.25 97.87 98.31 98.44 94.29 93.10 93.88 96.12 98.15 98.39 93.18 98.70 98.18 97.50 97.41 97.62 98.65 96.08 93.02 97.92 95.00 96.83 97.06 89.47 K intron_retention CG34394,I_chr2L_3365674_3365965 chr2L - chr2L_3362719_3362998 chr2L_3362718_3362719;chr2L_3362998_3362999 chr2L_3362711_3362718;chr2L_3362999_3363195 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA 97.06 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG17698 chr3L + chr3L_23739645_23740858;chr3L_23739645_23741523;chr3L_23739645_23741050 chr3L_23739645_23740972 chr3L_23739290_23739644 92.11 87.50 NA 84.21 95.45 95.65 87.01 86.76 96.00 NA NA 88.10 96.88 92.11 NA 92.86 88.00 NA 93.75 90.00 NA NA 100.00 95.65 NA 88.00 86.49 NA NA NA 96.67 NA NA 95.00 NA 80.00 NA 90.48 NA 89.29 NA 86.96 96.15 86.36 NA 95.83 NA NA 93.75 92.00 97.56 87.50 90.48 NA 93.75 96.67 92.86 NA K intron_retention RpS18,CG8908,EI_chr2R_16151918_16151997,I_chr2R_16151918_16152036,I_chr2R_16151938_16152065,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16151938_16152036 chr2R_16151937_16151938;chr2R_16152036_16152037 chr2R_16151852_16151937;chr2R_16152037_16152066 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.98 100.00 100.00 99.97 99.97 100.00 100.00 99.96 100.00 100.00 100.00 99.95 99.96 100.00 100.00 100.00 99.92 100.00 100.00 100.00 99.95 99.95 100.00 100.00 100.00 99.98 100.00 99.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.95 100.00 100.00 100.00 100.00 100.00 100.00 99.97 99.98 K intron_retention fliI,dod chrX + chrX_21214679_21214801 chrX_21214678_21214679;chrX_21214801_21214802 chrX_21214528_21214678;chrX_21214802_21216130 0.00 3.08 4.17 0.00 0.00 0.00 2.13 3.70 2.02 1.33 0.00 2.02 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.88 0.00 0.00 3.57 0.00 3.85 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.96 1.10 0.00 1.57 0.00 0.98 0.00 0.95 1.03 1.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 K alternative_donor simj,I_chr3L_10680263_10680313 chr3L + chr3L_10681881_10682025 chr3L_10681944_10682025 chr3L_10682026_10682480;chr3L_10681791_10681880 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Trf2,I_chrX_8318346_8318408 chrX + chrX_8303398_8304314 chrX_8303398_8304309 chrX_8303319_8303397;chrX_8304315_8304722 88.89 NA NA NA NA NA 81.82 NA 88.89 NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG8455 chr2L + chr2L_8200281_8200350 chr2L_8200280_8200281;chr2L_8200350_8200351 chr2L_8200102_8200280;chr2L_8200351_8200652 96.00 95.00 100.00 96.88 100.00 93.75 90.32 97.37 95.83 100.00 90.48 100.00 93.33 94.12 96.00 93.75 95.00 100.00 100.00 90.70 94.44 75.00 100.00 95.24 94.12 100.00 100.00 84.62 100.00 91.67 100.00 100.00 100.00 97.73 94.44 95.00 89.47 93.75 100.00 96.15 100.00 96.97 100.00 93.75 100.00 100.00 89.66 100.00 91.89 94.44 96.43 86.67 100.00 93.33 96.00 95.00 96.77 95.45 K intron_retention Set2 chrX + chrX_13314565_13314629 chrX_13314564_13314565;chrX_13314629_13314630 chrX_13314402_13314564;chrX_13314630_13315057 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 2.60 0.00 K cassette Adar,RI_chrX_1668256_1669638,RI_chrX_1668256_1669682,I_chrX_1668256_1682696,I_chrX_1674594_1674717 chrX + chrX_1668256_1672644 chrX_1668256_1669731;chrX_1669772_1672644 chrX_1669732_1669771 chrX_1668156_1668255;chrX_1672645_1672732 40.00 40.00 50.00 62.07 38.89 NA 47.06 37.50 33.33 NA NA 45.45 26.67 45.00 46.15 25.93 54.55 21.43 37.50 35.48 NA 35.29 40.00 40.00 40.00 NA 35.71 NA 25.00 41.67 43.75 NA NA 45.00 NA 50.00 66.67 25.00 50.00 33.33 NA 40.00 35.71 21.05 NA 50.00 NA 41.67 39.29 NA 40.00 30.77 NA NA 28.57 NA NA 38.46 K alternative_acceptor I_chrX_17546225_17546531,CG8211 chrX - chrX_17549488_17549815 chrX_17549492_17549815 chrX_17549816_17550846;chrX_17547855_17549487 94.44 94.74 94.44 91.67 91.67 91.67 95.24 100.00 100.00 91.67 90.91 96.15 100.00 92.31 100.00 93.75 100.00 100.00 100.00 87.50 100.00 97.67 96.55 92.00 100.00 94.12 91.30 95.24 95.83 94.44 73.91 92.31 91.67 100.00 83.33 100.00 91.30 85.00 96.15 96.97 90.91 96.30 91.67 96.15 96.30 95.65 87.50 95.45 93.55 93.33 93.10 100.00 93.75 100.00 96.15 93.75 83.33 94.12 K intron_retention CG17352,I_chr3L_8351006_8351949,I_chr3L_8351036_8351655 chr3L - chr3L_8346527_8346578 chr3L_8346526_8346527;chr3L_8346578_8346579 chr3L_8346519_8346526;chr3L_8346579_8347283 36.03 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA 33.33 35.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention AP-1sigma chr3R + chr3R_19784933_19785001 chr3R_19784932_19784933;chr3R_19785001_19785002 chr3R_19784754_19784932;chr3R_19785002_19785110 2.27 2.60 2.13 2.33 3.39 4.30 2.21 4.55 3.03 0.00 0.00 4.91 2.47 6.32 4.49 3.95 5.26 0.00 1.80 2.03 1.54 2.78 6.33 4.08 1.25 1.89 3.30 4.76 0.00 0.00 4.20 0.00 0.00 3.97 0.00 1.72 0.00 1.22 0.00 3.90 1.22 4.14 2.70 1.22 4.60 1.72 0.00 0.00 4.84 0.00 3.67 3.39 0.00 1.82 2.42 2.88 2.27 0.87 K intron_retention CG11876,CG11877 chr3R + chr3R_24939878_24940815 chr3R_24939877_24939878;chr3R_24940815_24940816 chr3R_24939716_24939877;chr3R_24940816_24941227 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.06 0.00 0.00 0.00 0.80 0.00 0.89 0.00 0.00 0.00 0.00 1.24 1.83 1.06 0.00 1.02 0.00 0.56 0.64 0.00 0.00 0.43 0.00 0.37 0.46 1.71 0.00 0.00 0.00 0.00 0.48 0.96 1.47 1.04 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG9135,I_chr2L_6050922_6051505 chr2L + chr2L_6050922_6051627 chr2L_6050922_6051616 chr2L_6050822_6050921;chr2L_6051628_6052022 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 98.41 95.24 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA 100.00 100.00 NA 100.00 NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA K intron_retention vlc chr2R + chr2R_1589799_1590371 chr2R_1589798_1589799;chr2R_1590371_1590372 chr2R_1589738_1589798;chr2R_1590372_1590451 19.23 20.00 21.43 23.44 11.76 23.33 19.67 17.95 19.23 22.22 22.58 20.99 16.33 18.18 21.05 22.50 21.43 68.97 25.00 19.42 22.22 22.73 15.38 14.63 24.24 20.51 13.64 28.57 NA 15.38 12.24 29.41 15.62 19.78 7.14 16.22 11.11 12.90 10.87 22.92 18.75 17.33 13.33 17.65 NA 7.41 17.86 26.67 17.89 11.76 16.13 19.35 9.38 9.52 20.75 22.22 14.63 22.73 K jcn_only_AA CG2698,I_chr3R_3828169_3828941,I_chr3R_3828880_3828941,I_chr3R_3829483_3829715,I_chr3R_3830586_3830981 chr3R + chr3R_3829483_3829555;chr3R_3829483_3829709;chr3R_3829483_3829721 chr3R_3829483_3829697 chr3R_3829383_3829482;chr3R_3829722_3829815 41.18 38.24 45.24 42.62 50.00 44.83 51.79 46.30 36.21 NA 62.16 48.61 55.17 32.35 51.02 44.68 40.91 NA 61.90 29.41 54.55 31.03 34.62 27.42 24.49 42.86 52.73 50.00 44.26 38.10 23.88 48.48 9.52 33.33 34.88 38.46 36.36 42.59 41.54 32.43 37.50 45.00 41.18 42.86 26.67 48.53 46.15 38.00 50.79 22.22 33.33 36.36 23.08 33.33 48.15 36.54 28.30 44.12 K alternative_donor Rho1,I_chr2R_11990455_11992537,RI_chr2R_11991687_11992537 chr2R + chr2R_11990362_11991115;chr2R_11990326_11991115;chr2R_11990814_11991115 chr2R_11990398_11991115 chr2R_11991116_11991279;chr2R_11990232_11990325 54.35 49.55 59.35 56.16 59.00 49.15 63.86 66.86 62.02 55.10 55.73 54.35 64.62 42.69 43.33 65.09 49.25 51.00 60.00 62.93 56.07 31.52 54.55 49.47 42.86 52.38 45.38 58.23 47.83 19.61 51.69 56.92 42.55 60.96 65.06 47.37 41.77 45.83 61.90 41.41 49.28 60.90 66.06 42.67 26.00 41.24 63.72 42.86 60.96 47.37 55.05 55.34 47.95 44.64 62.66 62.26 59.65 38.32 K intron_retention Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19553411_19553473 chr2R_19553410_19553411;chr2R_19553473_19553474 chr2R_19552817_19553410;chr2R_19553474_19553558 4.60 5.62 5.71 5.43 6.25 6.12 5.71 3.16 3.60 10.13 12.20 3.68 7.46 3.19 6.31 2.30 2.44 5.68 4.00 4.12 9.09 9.33 3.88 3.70 12.80 14.56 7.10 14.00 7.80 6.56 5.67 11.94 3.30 2.67 2.33 17.37 4.23 3.88 3.09 4.60 20.24 6.01 6.25 3.08 0.88 4.58 3.40 6.45 3.75 2.15 2.90 3.45 3.42 3.09 3.42 5.21 2.65 5.05 K intron_retention AT25722,CG3376 chr2R + chr2R_20151005_20151058 chr2R_20151004_20151005;chr2R_20151058_20151059 chr2R_20149687_20151004;chr2R_20151059_20151267 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Doa,I_chr3R_24715823_24718923,I_chr3R_24747391_24747896 chr3R + chr3R_24746992_24747062 chr3R_24746991_24746992;chr3R_24747062_24747063 chr3R_24746878_24746991;chr3R_24747063_24747080 38.89 40.00 40.00 42.86 33.33 35.71 66.67 40.00 30.23 NA 43.75 50.00 NA 56.25 45.00 32.00 38.89 26.67 36.36 43.33 23.08 36.84 47.62 34.78 50.00 16.67 56.52 46.15 43.75 42.86 33.33 41.67 15.79 39.13 NA 33.33 27.03 NA 36.36 23.81 NA 40.62 NA 43.75 21.43 31.82 46.15 NA 38.89 31.58 45.00 NA NA NA 33.33 30.00 30.00 18.75 K alternative_donor CG5830,I_chr3L_15996923_15996998 chr3L - chr3L_15997175_15997669 chr3L_15997175_15997448 chr3L_15996999_15997174;chr3L_15997670_15997711 100.00 100.00 100.00 97.30 100.00 100.00 94.44 100.00 100.00 100.00 100.00 96.97 95.65 100.00 95.83 97.73 95.00 100.00 96.15 97.83 100.00 95.24 100.00 100.00 100.00 100.00 94.12 100.00 94.44 100.00 100.00 91.67 93.33 100.00 95.00 100.00 100.00 85.71 100.00 96.00 93.75 97.14 100.00 100.00 90.91 100.00 92.31 96.77 97.73 100.00 100.00 100.00 90.00 87.50 96.15 100.00 87.50 96.55 K intron_retention CG1407,RI_chr2R_5918919_5919093,I_chr2R_5918925_5919213,RI_chr2R_5918952_5919084,RI_chr2R_5918952_5919093 chr2R - chr2R_5918952_5919084 chr2R_5918951_5918952;chr2R_5919084_5919085 chr2R_5918927_5918951;chr2R_5919085_5919090 6.12 3.85 10.53 6.52 0.00 0.00 13.79 5.56 7.59 0.00 8.33 10.53 6.12 8.00 11.36 3.77 2.17 3.12 10.81 1.23 5.00 0.00 0.00 9.09 0.00 4.76 13.21 14.29 13.33 NA 12.20 NA 0.00 4.08 19.05 0.00 12.12 13.79 5.26 22.73 NA 5.63 3.45 6.67 0.00 0.00 4.00 NA 6.49 13.04 7.14 13.64 NA 10.00 1.82 5.00 6.25 NA K alternative_donor CG31716,I_chr2L_10397648_10398034 chr2L + chr2L_10399677_10399767;chr2L_10399713_10399767 chr2L_10399689_10399767 chr2L_10399768_10400679;chr2L_10399595_10399676 53.33 54.00 60.71 56.60 48.15 54.35 52.24 60.44 55.22 56.25 54.55 52.43 56.14 59.18 43.66 46.07 55.32 58.18 58.33 53.68 53.57 53.33 50.00 54.69 55.26 62.75 51.72 52.17 40.00 54.00 47.37 47.06 36.23 51.72 51.35 50.00 54.05 39.13 48.57 47.67 54.76 49.15 53.19 55.00 57.45 46.55 25.00 45.45 52.29 55.32 49.25 47.92 46.88 55.17 58.62 55.56 60.00 48.98 K multi_cassette Hs6st,I_chr3R_15756255_15756482,I_chr3R_15756255_15831956,mira,I_chr3R_15764101_15831956,I_chr3R_15764179_15784434,RI_chr3R_15767991_15768053 chr3R - chr3R_15756255_15831956 chr3R_15756255_15762975;chr3R_15763161_15763223;chr3R_15763773_15763845;chr3R_15764179_15831956 chr3R_15762976_15763160;chr3R_15763224_15763772;chr3R_15763846_15764178 chr3R_15756155_15756254;chr3R_15831957_15832056 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG8611,I_chrX_17309193_17309577 chrX - chrX_17309193_17313480 chrX_17309193_17309577 chrX_17309093_17309192;chrX_17313481_17313908 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 2.38 0.00 NA 2.86 0.00 0.00 0.00 3.12 0.00 0.00 0.00 2.70 0.00 5.26 2.78 2.22 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 K cassette Mef2,CREFI_chr2R_5809509_5845628,RI_chr2R_5846889_5846948 chr2R - chr2R_5809509_5845628 chr2R_5809509_5828249;chr2R_5828459_5845628 chr2R_5828250_5828458 chr2R_5809499_5809508;chr2R_5845629_5845671 85.00 93.75 85.71 64.00 77.78 75.00 64.00 80.00 93.94 83.33 83.33 78.57 76.92 88.24 93.33 84.62 85.71 83.33 80.95 83.33 93.33 81.82 84.21 92.31 87.50 76.92 87.50 75.00 72.73 90.00 94.12 90.00 90.00 80.56 90.00 55.56 76.47 90.00 100.00 87.50 71.43 80.00 92.86 76.47 85.71 73.33 87.50 83.33 80.00 100.00 83.33 90.91 88.89 88.89 85.00 88.89 90.00 90.91 K alternative_donor Pur-alpha,I_chr4_581447_585166 chr4 + chr4_578795_580723 chr4_578927_580723 chr4_580724_580926;chr4_578726_578794 91.66 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention sta chrX - chrX_1376949_1377290 chrX_1376948_1376949;chrX_1377290_1377291 chrX_1376851_1376948;chrX_1377291_1377379 0.45 0.52 0.41 0.20 0.29 0.46 0.35 0.25 0.43 0.84 0.24 0.36 0.20 0.19 0.37 0.49 0.26 0.37 0.28 0.25 0.29 2.07 2.29 0.96 1.17 0.21 2.25 0.92 0.77 0.55 0.46 0.35 0.26 0.36 1.53 1.03 0.79 1.45 1.21 0.17 0.55 0.39 0.45 0.29 0.32 0.46 1.26 0.33 0.60 1.54 2.43 0.85 0.32 3.17 0.33 1.00 0.75 0.44 K alternative_acceptor CG9795,EI_chr3R_145575_147566,RI_chr3R_145613_145675 chr3R + chr3R_145613_147566 chr3R_145613_145675 chr3R_145513_145612;chr3R_147567_147666 31.03 26.67 31.03 28.57 50.00 29.03 37.84 28.95 29.03 29.41 66.67 31.48 37.04 39.13 26.83 34.21 30.77 60.71 32.26 40.00 58.33 40.00 17.78 25.58 22.73 40.00 23.26 43.75 50.00 33.33 37.14 34.62 39.13 31.25 28.57 29.41 25.00 20.69 16.28 24.53 66.67 24.64 29.63 22.22 45.00 37.50 30.00 39.13 25.71 20.93 18.00 26.92 15.79 40.00 28.95 37.04 41.67 50.00 K alternative_last_exon Tequila chr3L + chr3L_9068723_9080948;chr3L_9068723_9069957 chr3L_9068723_9068771 chr3L_9080949_9083048;chr3L_9069958_9070727 chr3L_9068772_9069365 chr3L_9068164_9068722 68.75 60.00 68.18 24.59 75.00 82.35 81.82 71.70 76.36 47.06 71.43 96.55 82.14 74.07 76.92 81.82 73.68 66.67 75.86 96.15 72.73 54.55 77.50 68.75 57.14 42.86 72.73 44.44 27.27 75.00 68.75 63.64 45.16 68.42 61.11 76.00 80.00 71.43 72.22 57.50 53.85 76.47 75.00 70.37 37.50 61.11 53.33 55.88 70.59 15.00 79.17 69.23 50.00 37.50 64.52 62.50 61.54 38.46 K jcn_only_AA smi35A,I_chr2L_14197568_14197656,I_chr2L_14197587_14197656,E_chr2L_14222082_14233893,RI_chr2L_14233579_14233647 chr2L - chr2L_14197568_14197656;chr2L_14197294_14197656 chr2L_14197587_14197656 chr2L_14197657_14197756;chr2L_14196927_14197293 1.43 0.00 0.00 5.32 2.86 6.06 7.50 3.70 0.00 0.00 4.76 1.43 5.77 0.00 0.00 0.00 5.13 12.12 2.70 5.56 0.00 3.62 0.00 1.79 0.00 0.00 1.54 5.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 1.69 1.67 0.00 5.00 1.37 0.00 2.22 4.35 0.00 3.33 9.62 1.43 0.00 3.45 7.32 0.00 3.70 3.57 0.00 4.17 0.00 K alternative_donor CG30005,I_chr2R_5495525_5495581 chr2R + chr2R_5495523_5495581 chr2R_5495525_5495581 chr2R_5495582_5495681;chr2R_5495425_5495522 0.00 0.00 0.00 4.76 0.00 3.57 10.87 2.27 6.52 NA 0.00 2.70 0.00 3.85 0.00 0.00 0.00 0.00 3.23 2.04 0.00 0.00 5.26 0.00 0.00 9.09 2.94 12.50 0.00 0.00 1.59 3.45 4.35 6.38 3.23 0.00 0.00 0.00 0.00 2.44 4.17 3.77 0.00 0.00 0.00 1.92 0.00 NA 1.33 0.00 5.88 0.00 0.00 0.00 0.00 8.70 2.56 4.17 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2391522_2395659 chrX_2391522_2392054;chrX_2392149_2392515;chrX_2392665_2393243;chrX_2393712_2395659 chrX_2392055_2392148;chrX_2392516_2392664;chrX_2393244_2393711 chrX_2391422_2391521;chrX_2395660_2395759 53.34 NA NA NA NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA oho23B,I_chr2L_2856176_2856244,I_chr2L_2856573_2856630,RI_chr2L_2856673_2856772 chr2L + chr2L_2856176_2856218;chr2L_2856176_2856246 chr2L_2856176_2856222 chr2L_2856076_2856175;chr2L_2856247_2856287 0.08 0.11 0.10 0.11 0.00 0.02 0.06 0.15 0.03 0.04 0.06 0.05 0.17 0.05 0.15 0.08 0.12 0.08 0.09 0.03 0.12 0.18 0.03 0.00 0.17 0.08 0.06 0.11 0.00 0.05 0.14 0.00 0.00 0.17 0.00 0.08 0.09 0.10 0.06 0.00 0.04 0.08 0.16 0.10 0.05 0.08 0.18 0.03 0.03 0.10 0.16 0.05 0.00 0.22 0.09 0.12 0.11 0.02 K intron_retention Dref chr2L - chr2L_9964868_9964927 chr2L_9964867_9964868;chr2L_9964927_9964928 chr2L_9964225_9964867;chr2L_9964928_9965315 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.00 K alternative_acceptor par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,EF_chr2R_15349994_15351814,F_chr2R_15349994_15351846,noncoding_8037,I_chr2R_15350149_15350210,FI_chr2R_15350149_15351814,I_chr2R_15350437_15351814,I_chr2R_15350437_15351825,I_chr2R_15350905_15351814,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15350285_15351846 chr2R_15350285_15351814 chr2R_15350273_15350284;chr2R_15351847_15351914 88.89 NA NA 63.64 NA NA 85.71 88.89 92.86 NA NA 87.50 NA 88.89 NA 90.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 90.91 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA K intron_retention betaggt-I chr2L + chr2L_4947735_4947825 chr2L_4947734_4947735;chr2L_4947825_4947826 chr2L_4946907_4947734;chr2L_4947826_4948377 83.33 79.45 87.50 83.53 70.83 77.27 84.21 85.00 86.07 79.37 79.49 77.55 65.00 83.33 86.44 86.57 82.50 59.52 85.48 87.00 71.43 65.85 88.89 79.31 87.84 83.64 85.87 60.56 85.39 81.94 87.50 78.12 90.54 87.50 82.98 97.30 82.81 83.15 78.69 82.76 93.33 84.75 82.61 86.21 74.71 87.96 85.06 86.21 79.46 82.80 87.78 80.95 87.50 92.11 79.10 88.00 80.16 81.25 K intron_retention CG12945,I_chr3R_5615604_5615859,I_chr3R_5615807_5615858,RI_chr3R_5616467_5616560 chr3R - chr3R_5616494_5616560 chr3R_5616493_5616494;chr3R_5616560_5616561 chr3R_5616402_5616493;chr3R_5616561_5616629 0.00 0.00 0.00 6.45 0.00 4.17 2.22 0.00 1.52 0.00 2.13 0.00 0.00 0.00 0.00 2.82 0.00 0.00 0.00 2.42 0.00 0.00 2.61 1.09 0.00 2.00 3.62 7.25 0.00 1.47 0.00 0.00 0.00 1.33 0.00 2.04 1.23 1.43 0.00 1.49 4.88 1.02 0.00 0.00 0.00 0.00 0.00 0.00 3.16 1.85 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 K intron_retention Srp19,I_chr3L_7340885_7340945 chr3L - chr3L_7340885_7340956 chr3L_7340884_7340885;chr3L_7340956_7340957 chr3L_7340785_7340884;chr3L_7340957_7341045 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.08 0.00 1.64 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 3.57 5.13 13.16 2.13 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 3.12 1.18 0.00 0.00 1.94 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.56 0.00 K intron_retention cni,RI_chr2L_16309575_16309999,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16310637_16310690 chr2L_16310636_16310637;chr2L_16310690_16310691 chr2L_16310441_16310636;chr2L_16310691_16310700 94.12 91.30 92.86 94.67 96.67 94.12 96.15 93.15 94.94 92.31 100.00 90.48 92.31 97.06 86.67 96.55 97.06 80.00 97.87 91.49 95.24 93.33 95.65 90.32 92.59 92.00 100.00 100.00 95.00 100.00 89.74 92.86 100.00 94.20 93.33 100.00 90.48 100.00 92.86 96.97 94.44 96.36 93.75 94.12 94.44 94.74 93.33 94.12 94.59 71.43 96.43 96.00 NA 90.00 93.75 90.91 93.75 90.91 K intron_retention Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_137255_137311 chr4_137254_137255;chr4_137311_137312 chr4_137167_137254;chr4_137312_137344 84.62 NA NA 87.50 NA NA 84.00 92.00 86.67 NA NA 80.00 NA 90.91 NA 84.62 NA NA 88.89 NA NA NA 91.67 NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA 81.25 80.00 NA NA NA NA NA 80.77 NA NA NA NA NA NA NA NA NA K jcn_only_AA Dnz1,I_chr2L_10856029_10856162 chr2L - chr2L_10856029_10856162 chr2L_10856099_10856162 chr2L_10856163_10856262;chr2L_10855929_10856028 100.00 98.44 100.00 100.00 100.00 100.00 100.00 100.00 98.77 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.58 100.00 100.00 99.15 99.18 100.00 100.00 100.00 100.00 97.89 98.39 98.70 100.00 100.00 99.20 100.00 100.00 98.97 100.00 99.36 98.44 100.00 98.64 97.92 100.00 99.46 100.00 100.00 99.49 100.00 98.25 97.83 100.00 98.81 98.89 100.00 100.00 100.00 100.00 K multi_cassette CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_261460_265805 chr4_261460_263086;chr4_263306_263801;chr4_264212_264259;chr4_264375_265805 chr4_263087_263305;chr4_263802_264211;chr4_264260_264374 chr4_261360_261459;chr4_265806_265905 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG31216 chr3R + chr3R_15497251_15497308 chr3R_15497250_15497251;chr3R_15497308_15497309 chr3R_15497235_15497250;chr3R_15497309_15497465 90.24 78.26 97.14 92.59 90.48 93.10 90.38 87.34 94.59 91.67 95.65 92.98 80.65 93.33 91.89 91.14 96.97 90.91 95.24 94.64 100.00 62.79 82.14 68.97 93.75 95.24 73.08 67.86 91.30 82.86 88.89 76.19 87.88 97.06 91.67 94.29 86.67 80.00 88.24 89.19 88.89 91.03 94.29 87.18 81.82 82.05 84.62 81.25 92.00 76.47 78.12 80.95 81.25 94.12 90.24 84.00 80.95 91.67 K intron_retention CG11009,I_chr3L_12844823_12845526,I_chr3L_12845441_12845526 chr3L + chr3L_12845378_12845526 chr3L_12845377_12845378;chr3L_12845526_12845527 chr3L_12845344_12845377;chr3L_12845527_12845621 4.00 3.45 2.33 5.43 0.00 8.33 30.00 8.06 6.90 NA 0.00 8.25 8.11 13.79 5.56 8.77 0.00 0.00 10.53 8.43 0.00 2.75 10.00 7.14 10.34 0.00 6.82 4.55 0.00 0.00 4.60 3.70 0.00 7.94 0.00 4.76 0.00 4.00 6.67 0.00 0.00 6.74 12.00 0.00 1.09 0.00 3.08 3.12 8.06 2.20 6.25 4.17 NA 0.00 0.00 0.00 4.08 1.59 K intron_retention RpL35,I_chrX_5566913_5567030,I_chrX_5567168_5567220 chrX + chrX_5566909_5567030 chrX_5566908_5566909;chrX_5567030_5567031 chrX_5566840_5566908;chrX_5567031_5567130 0.30 0.36 0.25 0.22 0.29 0.30 0.76 0.37 0.43 0.45 0.40 0.38 0.24 0.21 0.29 0.16 0.44 0.36 0.21 0.20 0.27 0.21 0.47 0.34 0.56 0.39 0.92 1.14 0.97 0.18 0.18 0.30 0.41 0.30 0.38 0.19 0.35 0.00 0.40 0.31 0.29 0.43 0.27 0.27 0.11 0.17 0.21 0.23 0.59 0.51 0.35 0.63 0.19 0.24 0.36 0.22 0.22 0.19 K intron_retention scyl chr3L + chr3L_11246061_11246802 chr3L_11246060_11246061;chr3L_11246802_11246803 chr3L_11245421_11246060;chr3L_11246803_11247752 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 12.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention AnnIX chr3R + chr3R_16894500_16894559 chr3R_16894499_16894500;chr3R_16894559_16894560 chr3R_16893791_16894499;chr3R_16894560_16894741 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.22 0.00 0.47 0.00 0.58 1.77 0.31 0.00 0.31 0.00 0.16 0.00 0.00 0.00 0.19 0.00 0.00 0.28 0.00 0.00 0.00 0.15 0.00 0.00 0.35 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 K jcn_only_AA CG1646,RI_chr3R_24638061_24638116,RI_chr3R_24638209_24638280,I_chr3R_24641816_24641874 chr3R + chr3R_24638209_24638426 chr3R_24638209_24638280 chr3R_24638117_24638208;chr3R_24638427_24638567 2.96 2.44 2.86 3.17 2.94 6.19 3.12 1.80 4.67 6.25 0.00 2.96 4.55 5.88 2.80 0.99 2.44 1.12 0.00 2.07 1.45 3.00 10.26 3.68 3.85 2.84 0.00 1.30 4.20 0.74 10.14 2.96 1.72 2.56 1.47 3.21 5.56 3.75 5.36 3.10 7.21 3.23 4.48 7.14 3.03 1.05 1.40 0.65 1.02 1.49 2.82 4.69 1.97 5.17 2.61 4.00 3.03 0.55 K intron_retention Sirt2,F_chr3R_16154400_16154450 chr3R + chr3R_16154396_16154450 chr3R_16154395_16154396;chr3R_16154450_16154451 chr3R_16154300_16154395;chr3R_16154451_16154542 12.50 10.81 14.29 12.90 9.68 16.33 12.70 10.47 18.52 0.00 2.56 8.54 12.50 4.65 5.45 11.48 14.29 17.95 15.52 9.47 5.00 7.14 11.54 15.56 5.71 16.36 14.75 12.90 9.09 12.50 18.00 13.64 15.15 12.50 15.15 15.15 5.26 3.57 4.44 10.29 10.81 13.33 16.28 7.69 6.67 12.50 11.76 17.65 9.38 16.28 15.87 13.16 3.23 9.30 16.13 11.76 12.96 27.03 K intron_retention I_chr2L_13965397_13965694,nimB3,RI_chr2L_13967695_13967746 chr2L - chr2L_13967695_13967750 chr2L_13967694_13967695;chr2L_13967750_13967751 chr2L_13967595_13967694;chr2L_13967751_13967841 0.00 0.00 0.00 0.00 0.00 0.00 2.70 1.20 5.83 0.00 0.00 0.00 0.00 0.00 3.39 1.64 0.00 2.86 3.64 1.09 2.78 7.41 0.00 0.00 0.00 2.38 2.08 3.85 6.67 0.00 15.38 0.00 0.00 0.00 0.00 0.00 1.61 0.00 2.33 0.00 2.94 0.00 0.00 0.00 0.00 3.25 0.00 2.44 7.02 0.00 0.00 0.00 0.00 0.00 6.25 0.00 3.70 0.64 K jcn_only_AD CG2017 chr3R - chr3R_1686127_1687468;chr3R_1686127_1687891;chr3R_1686127_1687510 chr3R_1686127_1688092 chr3R_1685454_1686126;chr3R_1688093_1688097 0.00 0.00 0.00 1.61 3.45 4.76 0.00 2.15 0.76 0.00 0.00 0.00 0.00 0.00 0.00 1.54 2.04 3.03 1.49 0.00 1.72 0.71 0.74 0.84 0.00 0.00 0.78 0.00 0.86 0.00 0.00 0.00 0.79 1.10 0.00 0.00 0.00 0.87 0.00 0.00 0.00 1.54 0.00 0.81 1.32 0.79 0.00 2.75 0.00 0.00 0.00 0.00 4.00 0.00 2.90 0.00 0.00 0.00 K intron_retention CG9796 chr3R - chr3R_9225155_9225231 chr3R_9225154_9225155;chr3R_9225231_9225232 chr3R_9224795_9225154;chr3R_9225232_9225366 1.76 0.68 0.00 6.56 1.15 1.12 4.00 3.06 1.65 2.86 0.00 1.88 0.00 0.00 2.94 3.12 2.44 0.00 0.00 2.37 0.00 6.79 2.07 1.65 3.10 2.99 2.94 5.71 10.16 3.09 1.41 2.25 1.42 1.46 1.71 4.31 0.66 1.49 1.87 1.76 5.09 2.78 0.00 1.84 2.10 1.35 0.85 3.46 0.62 1.10 1.94 0.00 0.93 0.00 3.33 1.20 0.59 3.62 K intron_retention CG10191 chr3L - chr3L_13382027_13382093 chr3L_13382026_13382027;chr3L_13382093_13382094 chr3L_13381823_13382026;chr3L_13382094_13383088 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Taf1,I_chr3R_2473463_2473515 chr3R + chr3R_2473324_2473515 chr3R_2473463_2473515 chr3R_2473516_2473615;chr3R_2473016_2473323 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 NA 3.64 0.00 2.94 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 3.51 NA 2.08 NA 0.00 NA 1.56 0.00 2.78 1.96 0.00 0.00 NA 0.00 NA NA 0.00 K intron_retention Arf79F,I_chr3L_22863166_22863946,I_chr3L_22863166_22864419,RI_chr3L_22863251_22863389,RI_chr3L_22863251_22863952,I_chr3L_22863251_22864009,I_chr3L_22863251_22864188,I_chr3L_22863251_22864501,I_chr3L_22863251_22864629,RI_chr3L_22863251_22864763,I_chr3L_22863251_22864866,RI_chr3L_22871119_22871250,I_chr3L_22871351_22871733 chr3L - chr3L_22863166_22864559 chr3L_22863165_22863166;chr3L_22864559_22864560 chr3L_22863151_22863165;chr3L_22864560_22864601 98.19 98.12 99.05 98.43 96.90 98.25 98.04 98.17 98.13 95.41 98.03 99.23 99.50 97.85 98.73 96.98 99.43 97.19 98.20 99.41 98.17 97.33 96.65 98.57 99.02 98.55 98.55 97.86 96.99 95.41 95.85 98.79 97.60 97.98 99.47 98.19 96.34 96.82 99.56 97.55 99.43 99.73 99.32 98.46 98.71 98.50 99.32 98.06 98.42 97.54 98.09 97.84 98.84 98.99 98.48 99.07 97.69 96.34 K alternative_donor qkr54B chr2R + chr2R_13360310_13360591 chr2R_13360315_13360591 chr2R_13360592_13361228;chr2R_13359998_13360309 96.82 96.55 96.77 94.00 100.00 100.00 98.33 98.08 98.75 100.00 94.74 94.55 100.00 90.00 100.00 92.98 100.00 91.30 97.06 96.30 100.00 100.00 97.67 94.87 95.83 100.00 94.92 91.67 95.65 100.00 97.10 95.45 100.00 96.23 94.12 95.65 96.55 95.00 96.77 98.21 100.00 96.88 96.15 95.12 100.00 96.97 97.30 100.00 100.00 95.77 97.78 NA 91.67 96.15 100.00 97.37 96.30 96.00 K jcn_only_AD CaMKI,I_chr4_466377_467726,I_chr4_467072_467446,I_chr4_467378_467424,RI_chr4_467374_467424,RI_chr4_467482_467543,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_467273_467446;chr4_467378_467446 chr4_467374_467446 chr4_467447_467481;chr4_467266_467272 16.65 NA NA NA NA NA 11.11 21.21 18.00 NA NA NA 26.92 9.09 NA 19.51 NA NA 9.09 15.91 NA NA NA NA NA NA NA NA NA NA 25.00 NA NA 18.92 NA NA NA NA NA 12.50 NA 20.69 4.55 NA NA NA NA NA 6.98 NA NA NA NA NA 15.38 NA 17.39 NA K jcn_only_AA CG8520,I_chr2R_8312580_8312637 chr2R + chr2R_8312580_8312637 chr2R_8312580_8312633 chr2R_8312480_8312579;chr2R_8312638_8312737 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 98.18 NA NA 97.30 NA 100.00 100.00 96.15 100.00 NA 100.00 98.08 96.15 95.00 100.00 97.67 NA 90.48 100.00 NA NA NA 95.35 NA NA 97.62 NA 95.65 100.00 NA 95.65 100.00 96.15 100.00 NA 92.31 NA 100.00 97.30 NA 100.00 100.00 96.15 100.00 100.00 100.00 96.55 95.65 97.92 100.00 K intron_retention CG14133 chr3L - chr3L_11684082_11684139 chr3L_11684081_11684082;chr3L_11684139_11684140 chr3L_11684025_11684081;chr3L_11684140_11684208 32.05 NA NA NA NA NA 50.00 NA 33.33 NA NA 41.67 NA NA NA NA NA NA 38.46 26.32 NA NA NA NA NA NA NA NA NA NA 47.06 NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA 28.57 NA NA NA NA NA NA 30.77 30.77 NA K jcn_only_AA Amun,I_chrX_11607839_11608272,I_chrX_11607842_11608105,I_chrX_11607842_11608125,RI_chrX_11607842_11608272 chrX - chrX_11607839_11608590 chrX_11607842_11608590 chrX_11608591_11608810;chrX_11607788_11607838 72.57 NA 60.71 72.41 81.82 68.18 66.67 67.65 70.89 NA 75.00 65.12 NA 65.00 60.00 79.17 NA NA 62.07 77.46 NA 73.33 NA NA NA NA NA NA 83.33 66.18 79.31 73.24 61.60 76.32 82.76 65.62 60.71 NA NA 74.07 67.44 79.49 NA 77.27 81.97 65.12 NA 74.38 70.00 72.73 NA NA 75.00 NA 79.41 NA NA 68.34 K intron_retention CG1718 chrX - chrX_21163958_21164390 chrX_21163957_21163958;chrX_21164390_21164391 chrX_21163741_21163957;chrX_21164391_21164557 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 NA 95.24 100.00 100.00 94.44 100.00 100.00 90.91 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 94.12 100.00 93.75 100.00 88.89 100.00 100.00 95.65 100.00 100.00 100.00 100.00 93.33 95.65 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 90.91 100.00 94.12 100.00 93.33 100.00 K intron_retention CG17912,I_chr2L_16749189_16749266 chr2L + chr2L_16749189_16749290 chr2L_16749188_16749189;chr2L_16749290_16749291 chr2L_16749153_16749188;chr2L_16749291_16749366 4.20 0.00 5.88 37.50 0.00 11.11 6.90 27.59 4.55 7.32 13.33 9.09 NA 5.56 5.56 9.09 NA 6.25 NA 1.92 0.00 24.24 3.16 6.94 0.00 NA 7.41 6.82 16.67 1.64 NA NA 11.76 7.69 3.85 12.12 3.33 0.00 1.20 2.86 0.00 2.08 NA 1.72 0.00 5.71 2.17 3.85 5.13 5.71 3.64 0.00 2.78 0.00 0.00 5.13 2.08 0.00 N cassette PpD3,CG8412,I_chr3R_5583152_5583200 chr3R + chr3R_5574124_5574631 chr3R_5574124_5574333;chr3R_5574576_5574631 chr3R_5574334_5574575 chr3R_5573897_5574123;chr3R_5574632_5574782 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 89.66 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG6420 chr3R - chr3R_22548837_22549888 chr3R_22548836_22548837;chr3R_22549888_22549889 chr3R_22548648_22548836;chr3R_22549889_22550937 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 0.00 4.76 3.85 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 2.82 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention SNF4Agamma,I_chr3R_16982134_16982890 chr3R + chr3R_16982134_16983159 chr3R_16982133_16982134;chr3R_16983159_16983160 chr3R_16982126_16982133;chr3R_16983160_16983379 21.43 NA NA 20.00 NA NA 36.00 24.14 21.88 NA NA 16.67 11.76 26.32 21.43 32.00 15.38 NA 17.65 0.00 NA NA NA NA NA NA NA NA NA NA 22.73 NA NA 20.69 NA NA NA NA NA NA NA 24.14 NA NA NA NA NA NA 24.14 NA NA NA NA NA 16.67 NA NA NA K intron_retention Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16108931_16110644 chr3L_16108930_16108931;chr3L_16110644_16110645 chr3L_16108769_16108930;chr3L_16110645_16111208 16.67 NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Myb,RI_chrX_15752571_15753225 chrX - chrX_15751647_15751709 chrX_15751646_15751647;chrX_15751709_15751710 chrX_15749823_15751646;chrX_15751710_15751876 100.00 100.00 96.43 92.59 100.00 100.00 97.50 100.00 100.00 100.00 92.86 97.92 95.65 96.30 100.00 97.06 100.00 100.00 97.56 98.04 100.00 95.24 100.00 94.74 94.12 100.00 100.00 100.00 90.00 93.33 100.00 92.31 100.00 98.33 95.00 95.65 100.00 100.00 100.00 89.74 100.00 97.92 96.43 100.00 100.00 100.00 100.00 100.00 98.41 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 96.55 K intron_retention mthl10 chr3L - chr3L_334120_334974 chr3L_334119_334120;chr3L_334974_334975 chr3L_334067_334119;chr3L_334975_335169 20.00 19.15 18.00 32.14 17.31 26.47 24.32 16.05 16.81 20.00 20.00 24.64 39.47 19.51 19.57 12.31 17.39 17.95 17.54 26.09 20.00 23.53 32.26 21.21 35.29 36.36 30.00 NA 36.84 18.75 37.50 18.52 15.38 12.86 20.00 13.64 28.95 7.41 26.47 24.59 31.58 25.32 12.50 11.86 14.29 20.93 16.00 24.14 20.83 15.15 22.50 24.14 12.00 26.32 14.29 20.00 17.14 14.29 K intron_retention daw,I_chr2L_2810644_2810693 chr2L + chr2L_2810644_2811148 chr2L_2810643_2810644;chr2L_2811148_2811149 chr2L_2810544_2810643;chr2L_2811149_2811528 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 3.23 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1969,CG1972 chr3R + chr3R_25572460_25572514 chr3R_25572459_25572460;chr3R_25572514_25572515 chr3R_25571485_25572459;chr3R_25572515_25573224 0.00 0.00 0.00 0.95 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.60 0.00 1.32 0.00 0.51 0.00 0.65 1.04 0.54 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.71 0.00 0.00 0.96 0.78 0.83 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 N jcn_only_AA CG15099 chr2R - chr2R_14725051_14725138 chr2R_14725074_14725138 chr2R_14725139_14725207;chr2R_14724985_14725050 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 67.16 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention scra,EI_chr2R_3480349_3480405 chr2R + chr2R_3479809_3479866 chr2R_3479808_3479809;chr2R_3479866_3479867 chr2R_3479443_3479808;chr2R_3479867_3480038 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.00 K intron_retention Rala chrX - chrX_3600285_3601400 chrX_3600284_3600285;chrX_3601400_3601401 chrX_3599901_3600284;chrX_3601401_3601524 73.91 52.63 68.18 79.41 35.00 56.52 73.53 81.25 60.00 36.84 NA 69.39 83.33 70.37 64.71 84.44 52.63 73.33 58.62 69.23 88.89 90.00 77.78 77.78 71.43 36.84 75.00 NA 93.75 80.00 65.38 75.86 79.17 68.09 78.95 71.43 64.71 80.00 80.00 84.62 80.95 66.67 71.43 68.18 77.78 90.24 88.24 81.63 67.31 73.33 73.91 77.78 60.00 81.25 78.26 82.35 68.18 74.60 K alternative_donor CG32016,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_978750_978816;chr4_978750_978939;chr4_978750_978910 chr4_978750_978914 chr4_978632_978749;chr4_978940_978943 35.71 NA NA NA NA NA 28.57 54.55 50.00 NA NA 50.00 NA 20.00 NA 35.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG33298 chr2L + chr2L_9519480_9519719 chr2L_9519535_9519719 chr2L_9519720_9520654;chr2L_9519394_9519479 1.04 1.85 0.00 0.00 0.00 2.94 0.00 0.82 1.47 0.00 1.96 2.38 1.45 2.78 1.35 2.22 0.00 1.85 0.00 1.04 0.00 1.80 2.47 0.00 4.00 0.00 0.00 4.00 6.25 0.00 4.55 0.00 2.27 0.00 2.63 0.00 0.00 0.00 0.00 0.00 4.00 2.31 1.89 0.00 3.57 0.00 2.33 3.70 4.35 2.74 0.00 0.00 3.33 0.00 0.00 0.00 0.00 3.92 K intron_retention CG7609,ATPsyn-gamma,I_chr3R_25574492_25574541 chr3R - chr3R_25574492_25574545 chr3R_25574491_25574492;chr3R_25574545_25574546 chr3R_25574392_25574491;chr3R_25574546_25574564 17.63 18.18 15.17 16.69 17.03 15.34 17.25 15.92 17.63 10.17 14.80 15.84 23.53 18.59 16.95 18.13 18.43 18.21 18.66 17.81 16.78 28.57 6.31 4.32 5.83 20.23 44.44 58.82 51.69 30.53 15.79 32.07 34.35 16.36 35.59 45.10 8.18 12.50 5.45 35.74 39.42 16.87 15.26 28.75 23.45 35.00 9.28 37.61 15.81 8.97 11.11 7.38 30.39 21.43 18.14 10.39 10.27 38.82 K alternative_donor CG11148,RI_chr4_886921_887162 chr4 - chr4_886921_887601;chr4_886921_887162;chr4_886921_887591 chr4_886921_887595 chr4_886821_886920;chr4_887602_887637 41.67 30.00 50.00 32.35 57.89 70.00 40.91 35.14 45.45 NA 21.43 40.74 43.75 55.56 29.17 42.86 47.37 33.33 36.36 42.86 30.77 NA 45.45 27.27 50.00 60.00 37.50 33.33 50.00 40.00 41.67 NA 52.38 34.38 NA 45.45 NA NA NA 47.83 NA 34.29 26.32 38.46 NA NA NA 38.46 48.89 85.71 27.27 NA NA NA 52.63 NA NA 42.86 K jcn_only_AD Cht2,I_chr3L_1754361_1754605,I_chr3L_1754361_1754860 chr3L - chr3L_1754361_1754860;chr3L_1754361_1754605 chr3L_1754361_1755586 chr3L_1754261_1754360;chr3L_1755587_1755934 45.49 NA 29.17 72.73 47.83 35.71 NA 42.31 69.70 NA 52.17 39.13 NA 36.00 50.00 21.74 NA 56.52 55.00 44.83 NA NA NA NA NA 65.00 NA NA NA NA 29.17 NA NA 43.75 NA NA NA NA NA NA NA 51.22 NA NA NA NA NA NA 46.15 NA NA NA NA NA 37.50 NA NA NA N jcn_only_AA EF_chr2R_8548702_8595112,nemy chr2R - chr2R_8561434_8563629;chr2R_8560845_8563629;chr2R_8561431_8563629 chr2R_8563548_8563629 chr2R_8563630_8563736 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CREF_chr3R_5589662_5589762,CG8500 chr3R + chr3R_5610483_5611473 chr3R_5610482_5610483;chr3R_5611473_5611474 chr3R_5610477_5610482;chr3R_5611474_5611635 19.05 14.29 14.29 17.65 38.46 20.00 12.50 11.43 10.81 NA NA 27.59 10.53 0.00 18.52 19.23 NA 50.00 19.05 24.24 NA NA NA NA NA 38.46 6.67 NA NA NA 12.00 NA NA 18.52 NA 23.08 NA NA NA 27.27 NA 23.68 NA NA NA NA NA NA 18.42 NA 21.05 NA NA NA 20.00 NA NA 26.67 K cassette slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,I_chr2R_20289332_20290093 chr2R - chr2R_20280727_20283565 chr2R_20280727_20281010;chr2R_20281038_20283565 chr2R_20281011_20281037 chr2R_20279743_20280726;chr2R_20283566_20283698 43.48 45.45 41.18 18.56 31.67 33.87 48.48 31.43 39.32 37.04 44.07 50.55 51.79 49.12 42.86 49.30 48.98 43.14 51.52 32.84 35.71 20.69 39.80 47.67 29.31 40.00 30.59 67.50 40.79 40.26 40.28 43.33 48.57 43.62 28.30 52.38 34.96 47.14 42.53 56.10 44.93 40.91 50.00 59.15 66.67 44.32 41.30 50.56 50.51 46.91 36.47 52.08 52.94 37.50 43.48 36.76 55.22 60.95 K intron_retention tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_562975_563035 chr3R_562974_562975;chr3R_563035_563036 chr3R_562905_562974;chr3R_563036_563097 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 4.26 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG7530,I_chr3R_10553050_10555615,eff chr3R - chr3R_10553050_10556232 chr3R_10553050_10554503 chr3R_10552950_10553049;chr3R_10556233_10556351 5.13 4.32 5.05 8.08 4.08 4.40 10.96 8.82 7.50 3.85 5.63 6.72 7.89 8.05 6.06 11.32 5.32 7.58 8.08 6.08 4.44 12.50 3.87 3.25 5.77 5.63 3.08 2.78 4.35 3.33 5.88 6.82 2.90 8.15 5.88 5.13 1.89 2.80 2.56 4.90 9.09 6.25 7.00 4.08 3.85 6.74 2.56 9.52 6.47 3.70 4.88 4.11 0.78 3.28 7.08 3.57 2.26 3.49 K alternative_acceptor RI_chr3R_7644683_7644880,CG6950,I_chr3R_7647556_7647628 chr3R - chr3R_7647542_7647628 chr3R_7647556_7647628 chr3R_7647629_7647728;chr3R_7647456_7647541 7.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor mbc,I_chr3R_19615584_19615649,I_chr3R_19625220_19625288 chr3R + chr3R_19625373_19625589 chr3R_19625373_19625465 chr3R_19625289_19625372;chr3R_19625590_19625680 7.48 8.89 7.50 7.00 2.63 4.65 10.53 5.71 5.37 10.71 5.66 7.48 8.51 5.77 4.48 2.86 6.56 3.57 4.17 6.00 8.00 6.82 7.14 7.58 14.29 4.08 7.81 7.41 7.41 12.12 4.17 22.22 21.05 3.88 11.76 13.33 9.23 10.81 10.42 11.86 13.04 5.45 5.71 4.35 9.09 10.42 8.77 13.79 6.98 6.56 10.14 5.88 8.82 3.92 5.56 9.09 11.76 30.77 K intron_retention CG1815,I_chr3R_27501104_27501167,I_chr3R_27501104_27501176 chr3R + chr3R_27501104_27501179 chr3R_27501103_27501104;chr3R_27501179_27501180 chr3R_27501004_27501103;chr3R_27501180_27501267 95.50 92.50 95.56 98.48 97.06 97.30 91.38 95.59 97.59 93.33 93.55 94.94 92.31 97.37 97.87 98.15 87.50 95.24 97.92 95.60 95.65 93.33 94.92 89.29 97.06 97.73 94.55 94.74 96.00 94.00 93.22 97.83 89.77 90.79 93.44 97.96 98.46 91.89 96.97 96.34 98.08 96.97 96.88 100.00 89.09 91.04 96.55 95.50 91.86 94.34 92.73 88.89 97.22 96.15 95.31 97.50 88.57 95.40 K jcn_only_AD CG15881,RI_chr3L_19799338_19799394,RI_chr3L_19799338_19799408,Kap-alpha1 chr3L + chr3L_19799338_19799405;chr3L_19798903_19799405 chr3L_19798419_19799405 chr3L_19799406_19799494;chr3L_19798405_19798418 0.00 0.00 4.55 0.00 NA NA 0.00 3.57 0.00 NA 4.35 0.00 NA NA NA 0.00 NA 0.00 4.00 0.00 4.17 0.00 NA 3.03 NA NA 10.34 NA NA 0.00 0.00 0.00 0.00 0.00 5.00 NA 0.00 0.00 0.00 0.00 NA 5.71 NA 0.00 0.00 1.96 0.00 0.00 0.00 0.00 2.86 0.00 0.00 2.56 0.00 2.22 0.00 0.00 K jcn_only_AD CG11248 chr3L + chr3L_21673324_21673399;chr3L_21673333_21673399 chr3L_21673253_21673399 chr3L_21673400_21675533;chr3L_21673237_21673252 5.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG2924,I_chrX_2160702_2160852,I_chrX_2160752_2160852,I_chrX_2163738_2164560,I_chrX_2168373_2168893 chrX - chrX_2160705_2160852 chrX_2160752_2160852 chrX_2160853_2160952;chrX_2160652_2160704 0.00 0.00 0.00 0.00 4.00 0.00 2.56 0.00 4.05 1.89 0.00 0.00 0.00 0.00 2.22 1.35 0.00 2.70 2.17 2.76 0.00 1.14 2.38 0.00 0.00 0.00 6.45 0.00 1.54 0.00 3.85 0.00 2.15 1.56 3.45 0.00 0.00 0.00 0.00 3.03 1.23 1.16 3.70 0.00 0.00 2.27 3.45 1.20 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.76 K alternative_donor gbb chr2R + chr2R_19739125_19739205 chr2R_19739129_19739205 chr2R_19739206_19740772;chr2R_19739106_19739124 90.48 91.67 85.71 84.09 95.00 92.86 68.63 88.24 79.37 NA 89.29 93.88 85.71 80.00 96.30 97.22 90.48 78.26 82.86 92.00 84.00 78.95 NA NA NA 100.00 NA NA 100.00 NA 96.77 93.75 80.95 97.50 NA NA NA NA NA NA 94.74 91.84 85.00 NA 84.00 93.33 NA 94.74 85.00 NA NA NA NA NA 93.94 NA NA 89.29 K intron_retention I_chr2L_19644636_19644695,REI_chr2L_19702035_19702145,Nf-YB chr2L + chr2L_19736209_19736272 chr2L_19736208_19736209;chr2L_19736272_19736273 chr2L_19736042_19736208;chr2L_19736273_19736580 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 3.57 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1814,Updo chr2R + chr2R_5468510_5468570 chr2R_5468509_5468510;chr2R_5468570_5468571 chr2R_5468323_5468509;chr2R_5468571_5468711 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 1.72 0.00 0.00 4.26 0.00 0.00 0.00 3.85 0.00 4.35 5.26 2.90 NA 0.00 0.00 4.76 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 2.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 8.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention dally,I_chr3L_8821604_8828151 chr3L + chr3L_8881235_8881751 chr3L_8881234_8881235;chr3L_8881751_8881752 chr3L_8881059_8881234;chr3L_8881752_8881959 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention mRpS23 chr2L - chr2L_13834884_13834938 chr2L_13834883_13834884;chr2L_13834938_13834939 chr2L_13834722_13834883;chr2L_13834939_13835141 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.75 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG16721 chrX + chrX_5775355_5775418 chrX_5775354_5775355;chrX_5775418_5775419 chrX_5774867_5775354;chrX_5775419_5775903 0.00 0.00 0.00 2.78 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 3.45 0.00 2.15 0.00 3.82 0.00 0.00 0.00 0.00 0.00 1.47 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 K intron_retention CG4622 chr2R - chr2R_20422610_20422664 chr2R_20422609_20422610;chr2R_20422664_20422665 chr2R_20421938_20422609;chr2R_20422665_20422849 5.72 NA 11.11 9.52 NA NA 14.29 21.05 12.20 NA NA 4.35 NA NA NA NA NA NA 6.67 0.00 NA 12.50 0.00 0.00 NA NA 21.05 NA NA NA NA 0.00 NA NA 0.00 16.67 8.70 NA 5.56 4.35 NA 14.29 NA 0.00 NA 6.25 0.00 NA 9.09 0.00 4.76 NA 5.88 0.00 19.05 NA 4.17 0.00 K intron_retention Ranbp16,I_chrX_15826655_15827277 chrX - chrX_15821870_15823373 chrX_15821869_15821870;chrX_15823373_15823374 chrX_15821732_15821869;chrX_15823374_15823435 0.00 5.00 0.00 4.88 0.00 0.00 9.68 0.00 11.43 NA NA 7.89 0.00 0.00 6.67 3.45 4.35 NA 4.76 2.22 NA 23.08 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 3.12 4.76 NA 5.71 6.67 NA 0.00 0.00 0.00 0.00 NA 4.17 5.00 0.00 0.00 0.00 0.00 6.67 0.00 NA 4.76 0.00 NA NA 6.67 0.00 4.76 0.00 K intron_retention CG12945,I_chr3R_5615604_5615859,I_chr3R_5615807_5615858,RI_chr3R_5616467_5616560 chr3R - chr3R_5615807_5615859 chr3R_5615806_5615807;chr3R_5615859_5615860 chr3R_5615707_5615806;chr3R_5615860_5615958 0.00 0.00 0.00 14.47 0.00 9.09 5.63 0.00 7.25 NA 0.00 4.92 0.00 2.44 0.00 7.59 7.14 0.00 5.88 4.62 0.00 0.00 5.26 0.00 5.56 22.22 0.00 9.09 21.43 0.00 6.38 4.55 0.00 5.33 0.00 13.64 NA 0.00 0.00 2.94 8.33 1.67 2.70 0.00 0.00 5.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 K jcn_only_AD hppy,I_chr2R_15066378_15066915,I_chr2R_15105700_15106080,I_chr2R_15106144_15108248 chr2R + chr2R_15066304_15067003;chr2R_15066378_15067003;chr2R_15066358_15067003 chr2R_15066243_15067003 chr2R_15067004_15067015;chr2R_15066237_15066242 0.00 NA NA NA NA NA NA NA 0.00 NA NA 4.55 NA NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K jcn_only_AA cic chr3R + chr3R_16125516_16125689 chr3R_16125516_16125674 chr3R_16125423_16125515;chr3R_16125690_16125874 84.25 86.87 79.26 71.64 80.52 82.19 90.48 79.84 84.91 97.30 82.30 85.31 85.44 81.94 78.95 80.52 78.67 82.56 84.25 83.52 84.00 87.40 84.62 86.27 98.47 96.26 70.98 66.23 87.61 84.83 82.25 91.03 86.27 84.33 88.19 94.67 87.83 86.93 87.93 83.46 95.89 87.60 82.93 90.84 75.28 83.22 87.35 86.39 84.07 84.91 82.03 82.58 81.02 88.46 83.74 80.16 78.31 82.61 K intron_retention alien chr2L - chr2L_8995747_8995803 chr2L_8995746_8995747;chr2L_8995803_8995804 chr2L_8995602_8995746;chr2L_8995804_8996136 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.38 0.00 0.00 0.00 0.00 0.00 1.43 1.13 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.62 0.00 0.00 1.14 1.40 0.00 0.68 0.00 N multi_cassette CG6643,I_chr3R_20370792_20375406 chr3R + chr3R_20378379_20380423 chr3R_20378379_20379716;chr3R_20379803_20380077;chr3R_20380127_20380423 chr3R_20379717_20379802;chr3R_20380078_20380126 chr3R_20378208_20378378;chr3R_20380424_20380855 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 42.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor pigeon chr2L + chr2L_19187018_19187078 chr2L_19187021_19187078 chr2L_19187079_19188242;chr2L_19186980_19187017 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA 100.00 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA 100.00 100.00 NA 100.00 NA 100.00 NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA K jcn_only_AA PP2A-B',I_chr3R_13997426_13997884 chr3R + chr3R_13997426_14001054;chr3R_13997426_13998847 chr3R_13997426_13997884 chr3R_13997326_13997425 0.00 0.00 0.00 0.00 0.00 0.00 1.56 1.05 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 1.03 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 1.10 2.20 0.00 0.00 0.00 1.89 0.00 1.12 0.00 K intron_retention bves chrX + chrX_20946550_20946618 chrX_20946549_20946550;chrX_20946618_20946619 chrX_20946392_20946549;chrX_20946619_20946721 0.00 0.00 4.35 0.00 0.00 0.00 6.25 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA 5.13 NA 4.65 0.00 0.00 10.53 33.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.05 0.00 0.00 5.26 4.44 NA 4.65 NA 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG14619,I_chrX_21869837_21869915 chrX + chrX_21869837_21869947 chrX_21869837_21869915 chrX_21869758_21869836;chrX_21869948_21870015 0.00 1.18 0.00 0.00 0.00 1.22 0.00 0.00 0.35 0.00 0.00 0.55 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.97 0.00 0.00 0.52 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention fwd,I_chr3L_310787_310918,RI_chr3L_319514_319746 chr3L - chr3L_310787_311173 chr3L_310786_310787;chr3L_311173_311174 chr3L_310687_310786;chr3L_311174_311285 1.94 1.79 3.16 0.00 0.00 0.00 3.37 0.00 3.21 0.00 3.70 4.00 8.47 0.00 2.33 0.79 0.00 0.00 1.22 1.45 1.92 7.02 2.44 2.30 6.45 5.00 2.67 0.00 8.33 0.00 2.38 0.00 6.35 0.00 3.03 3.03 1.45 4.48 0.00 3.36 0.00 2.92 0.00 1.94 3.45 3.03 0.00 3.95 2.98 0.00 3.85 3.08 2.94 0.00 1.83 0.00 0.00 0.00 K intron_retention noncoding_20681 chr4 + chr4_480534_480681 chr4_480533_480534;chr4_480681_480682 chr4_480513_480533;chr4_480682_480767 93.75 100.00 100.00 85.00 NA 100.00 84.38 93.55 96.67 NA NA 94.12 93.75 88.24 90.00 96.15 100.00 88.89 94.74 94.12 NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA 93.75 NA NA NA NA NA 100.00 90.00 92.59 93.33 NA NA 93.75 NA 92.31 91.67 100.00 88.89 NA NA NA NA 100.00 90.91 95.24 K alternative_donor CG9775,I_chr3R_464132_464367,I_chr3R_466059_466296 chr3R - chr3R_465475_465734 chr3R_465475_465590 chr3R_465356_465474;chr3R_465735_466058 17.54 13.04 17.65 18.31 16.95 17.54 33.33 22.54 13.51 9.38 17.31 14.29 21.05 19.23 21.54 24.14 13.21 21.82 20.00 13.24 16.13 17.78 16.19 15.74 21.82 20.41 32.35 13.04 30.77 7.69 52.17 14.29 20.34 20.00 22.50 40.54 8.61 10.89 14.96 17.65 25.71 16.42 15.38 22.92 11.69 25.37 11.11 15.38 19.33 16.44 25.64 20.69 11.54 11.59 17.95 15.85 12.37 17.31 K alternative_acceptor Ddip2,I_chr3L_252776_253313 chr3L - chr3L_256591_256648 chr3L_256594_256648 chr3L_256649_256793;chr3L_256214_256590 87.50 92.31 88.89 92.00 92.31 94.12 84.62 85.19 76.32 100.00 90.00 68.97 82.61 100.00 91.67 96.30 90.91 87.50 84.21 90.00 75.00 87.10 84.00 92.31 66.67 84.62 88.24 88.89 84.62 87.50 83.33 NA 89.47 83.33 78.57 94.44 93.75 75.00 90.00 85.19 80.00 86.49 91.67 81.82 NA 88.89 88.89 77.78 86.21 NA 91.67 87.50 NA NA 80.95 NA NA 60.00 K intron_retention RI_chr3L_707623_707678,CkIIalpha-i3,CG13896,RI_chr3L_711692_711744 chr3L - chr3L_710248_710309 chr3L_710247_710248;chr3L_710309_710310 chr3L_709738_710247;chr3L_710310_710322 100.00 100.00 92.31 96.15 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 93.33 94.12 95.83 100.00 100.00 100.00 100.00 90.00 100.00 100.00 92.31 100.00 100.00 100.00 NA 100.00 100.00 92.31 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 90.00 100.00 96.67 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 K alternative_donor chico,I_chr2L_10246534_10246899 chr2L - chr2L_10246040_10246184;chr2L_10246040_10247024;chr2L_10246040_10246755;chr2L_10246040_10246867 chr2L_10246040_10246899 chr2L_10245878_10246039;chr2L_10247025_10247051 73.08 72.22 73.08 77.42 83.33 66.67 62.07 63.89 69.57 87.50 76.92 71.05 72.73 69.57 75.00 67.44 57.89 64.71 61.54 67.92 50.00 68.75 75.00 68.75 71.43 63.16 57.89 70.00 61.11 87.50 75.00 88.24 76.19 74.29 80.00 76.47 81.48 85.71 68.18 82.22 66.67 67.57 64.71 72.41 85.71 78.57 88.89 80.00 70.73 91.67 77.78 90.91 76.92 83.33 67.74 90.91 75.00 79.17 K intron_retention C3G chrX - chrX_6683085_6683744 chrX_6683084_6683085;chrX_6683744_6683745 chrX_6682502_6683084;chrX_6683745_6683770 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG9253,snoRNA:Me18S-A469 chr2L + chr2L_21143823_21144011 chr2L_21143823_21143996 chr2L_21143564_21143822;chr2L_21144012_21145146 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 1.09 2.56 1.18 0.00 0.00 0.00 1.71 0.00 0.00 0.00 0.00 1.30 0.93 0.00 0.50 0.79 1.02 0.68 2.54 0.00 0.00 1.61 0.00 0.00 0.68 0.00 0.76 0.70 0.00 0.81 0.95 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.60 0.00 0.00 0.43 0.00 0.00 1.55 0.00 1.52 K intron_retention I_chr3R_17177101_17200781,mod(mdg4),RI_chr3R_17183087_17183245,RI_chr3R_17183087_17183726,I_chr3R_17183481_17200781,I_chr3R_17183927_17184513,I_chr3R_17183927_17185306,RI_chr3R_17184319_17184513,I_chr3R_17184319_17185084,I_chr3R_17184319_17185284,noncoding_18168,RI_chr3R_17184792_17185306,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,RI_chr3R_17189607_17189988,I_chr3R_17190098_17190207,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,I_chr3R_17197790_17197863,RI_chr3R_17198778_17199052,RI_chr3R_17198803_17199019,RI_chr3R_17198803_17199052 chr3R - chr3R_17182691_17182836 chr3R_17182690_17182691;chr3R_17182836_17182837 chr3R_17182533_17182690;chr3R_17182837_17183086 78.57 NA NA 90.91 NA NA 63.64 87.50 83.33 NA NA 71.43 NA NA NA 70.00 NA NA NA NA NA 58.33 36.36 NA NA NA NA NA NA NA NA NA NA 78.57 88.89 NA NA NA NA 100.00 NA 82.35 NA NA NA NA NA NA 78.57 NA NA NA NA NA 66.67 NA 66.67 NA K alternative_donor cact,RI_chr2L_16314859_16315116,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16325055_16325587;chr2L_16325055_16325493 chr2L_16325055_16325577 chr2L_16324333_16325054;chr2L_16325588_16325598 0.00 0.00 0.00 3.08 2.50 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG33129,I_chr2L_10966410_10967142,noncoding_2515,I_chr2L_10966622_10967108 chr2L - chr2L_10966622_10968104;chr2L_10966622_10968083;chr2L_10966622_10968133 chr2L_10966622_10967855 chr2L_10966522_10966621;chr2L_10968134_10968152 2.50 0.00 4.55 3.49 0.00 0.00 5.00 2.50 2.29 9.09 2.22 2.33 5.13 4.17 1.61 2.50 0.00 2.17 3.28 3.25 2.94 6.25 10.00 15.38 NA 0.00 16.67 NA 0.00 NA 2.22 0.00 0.00 4.65 NA 8.33 9.09 NA NA 9.09 0.00 2.80 2.56 NA 0.00 0.00 NA 4.35 2.59 NA 12.50 0.00 NA NA 1.92 NA 0.00 0.00 K intron_retention RPA2,RI_chr2L_20925851_20925909 chr2L - chr2L_20925851_20925909 chr2L_20925850_20925851;chr2L_20925909_20925910 chr2L_20925751_20925850;chr2L_20925910_20925975 77.78 NA NA NA NA NA NA NA 77.78 NA NA NA NA NA NA NA NA NA NA 69.23 NA 100.00 71.43 87.50 100.00 100.00 78.57 NA 95.00 NA NA NA NA NA NA NA 63.64 NA 60.00 100.00 100.00 NA NA NA NA NA 77.78 NA NA 77.78 66.67 NA NA NA NA 72.73 NA NA K alternative_acceptor CG31705,I_chr2L_11525668_11525916 chr2L - chr2L_11525668_11528120 chr2L_11526013_11528120 chr2L_11528121_11528201;chr2L_11525594_11525667 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.10 0.67 0.00 0.14 0.00 0.26 0.00 0.18 0.00 0.00 0.00 0.09 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Vps13,I_chr2R_3464510_3464571 chr2R + chr2R_3466916_3466980 chr2R_3466915_3466916;chr2R_3466980_3466981 chr2R_3466815_3466915;chr2R_3466981_3466986 0.00 5.26 0.00 14.63 NA 0.00 0.00 0.00 0.00 15.00 0.00 6.06 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 19.61 4.00 0.00 12.00 22.22 8.00 17.65 12.50 0.00 4.08 4.76 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 9.52 2.00 0.00 0.00 0.00 0.00 0.00 4.76 5.26 5.00 0.00 4.76 0.00 0.00 2.56 0.00 0.00 0.00 K intron_retention alpha-Spec chr3L - chr3L_1779311_1779384 chr3L_1779310_1779311;chr3L_1779384_1779385 chr3L_1779111_1779310;chr3L_1779385_1779985 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.46 0.00 0.00 0.12 0.14 0.00 0.00 0.64 0.27 0.51 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.23 0.00 0.48 0.37 0.50 0.41 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 K intron_retention CG10137,CG33116 chr2L + chr2L_19530190_19530889 chr2L_19530189_19530190;chr2L_19530889_19530890 chr2L_19530090_19530189;chr2L_19530890_19530896 43.65 NA NA 72.73 NA NA NA NA 44.44 NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA 30.77 NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA 42.86 NA NA NA NA NA 45.45 NA NA NA K intron_retention mnb chrX - chrX_17764213_17764287 chrX_17764212_17764213;chrX_17764287_17764288 chrX_17763926_17764212;chrX_17764288_17764455 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6049 chr3L - chr3L_21418646_21425954 chr3L_21418645_21418646;chr3L_21425954_21425955 chr3L_21417818_21418645;chr3L_21425955_21426213 0.00 0.00 0.00 3.12 NA NA 0.00 0.00 5.00 NA 0.00 4.44 0.00 9.09 0.00 3.23 0.00 0.00 3.45 4.08 0.00 NA 0.00 6.45 0.00 NA 4.76 NA NA 0.00 3.70 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 8.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 4.76 0.00 K cassette I_chrX_10148341_10149525,noncoding_22888,I_chrX_10152994_10153223 chrX - chrX_10149624_10152910 chrX_10149624_10151700;chrX_10152051_10152910 chrX_10151701_10152050 chrX_10149593_10149623;chrX_10152911_10152993 60.00 NA NA 71.43 60.00 NA 84.00 90.91 58.33 80.00 NA 100.00 NA NA 75.00 100.00 NA NA NA 66.67 NA 42.86 40.00 50.00 33.33 80.00 55.56 20.00 NA 37.50 100.00 NA 42.86 80.00 NA 63.16 37.50 NA NA 40.00 50.00 85.71 NA 66.67 25.00 NA NA 60.00 100.00 NA 50.00 NA NA NA NA NA 50.00 NA K jcn_only_AD ptr,I_chrX_2243281_2243359,I_chrX_2243281_2243373,I_chrX_2243647_2248739 chrX - chrX_2243281_2243374 chrX_2243281_2243359 chrX_2243181_2243280;chrX_2243375_2243459 3.45 11.54 0.00 4.76 NA 3.45 2.78 10.00 3.64 NA NA 0.00 NA NA 3.70 5.00 NA NA NA 3.12 NA 2.86 1.67 0.00 2.94 0.00 7.02 4.40 6.25 9.76 5.00 4.17 4.17 6.45 0.00 7.41 5.71 7.14 1.61 0.00 2.70 3.03 0.00 3.45 0.00 5.56 5.41 0.00 2.94 7.02 3.33 3.85 0.00 NA 0.00 NA NA 6.90 K cassette scrib,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22406745_22416162 chr3R_22406745_22415629;chr3R_22415781_22416162 chr3R_22415630_22415780 chr3R_22406645_22406744;chr3R_22416163_22416262 100.00 100.00 100.00 99.07 100.00 100.00 100.00 100.00 99.22 100.00 100.00 100.00 97.73 100.00 100.00 100.00 98.28 100.00 100.00 97.46 100.00 99.20 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.63 100.00 100.00 100.00 100.00 100.00 98.25 100.00 100.00 100.00 99.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.11 98.63 100.00 96.67 100.00 100.00 100.00 100.00 100.00 K intron_retention Rtnl1,I_chr2L_4994995_4995154,I_chr2L_4994995_5006383,RE_chr2L_4994997_5008180,I_chr2L_4999312_5000248,I_chr2L_4999386_4999670,I_chr2L_4999386_5000201,I_chr2L_5004757_5006383,I_chr2L_5004775_5006231,I_chr2L_5004775_5006381,I_chr2L_5004775_5006392,I_chr2L_5027222_5028118 chr2L - chr2L_4994995_5004171 chr2L_4994994_4994995;chr2L_5004171_5004172 chr2L_4994897_4994994;chr2L_5004172_5004207 20.00 25.00 4.76 20.00 18.52 19.35 35.00 31.03 26.00 NA 46.15 25.00 28.57 19.05 10.00 37.50 15.38 13.79 20.00 16.92 NA 23.81 NA NA NA 15.00 30.77 14.29 17.39 NA 19.05 6.67 21.05 19.35 NA NA 12.50 NA 41.67 23.08 NA 21.74 29.41 13.04 8.70 6.67 25.00 26.92 24.44 NA 35.71 NA 10.53 NA 22.73 NA NA 17.65 K intron_retention CG42574,I_chr3R_618802_618939,I_chr3R_621543_625413,I_chr3R_621546_625413 chr3R - chr3R_621543_622210 chr3R_621542_621543;chr3R_622210_622211 chr3R_621459_621542;chr3R_622211_622332 25.00 NA NA 8.70 NA NA 22.22 30.77 16.67 NA NA 34.62 NA NA NA 33.33 41.67 NA NA 14.29 NA 40.82 26.92 NA 14.29 NA NA 28.21 25.00 35.71 NA NA 14.29 NA NA 25.00 21.43 NA 11.11 23.81 NA 15.00 NA 31.25 NA NA NA 30.77 20.00 NA 26.67 NA NA NA NA NA NA NA K alternative_donor eIF3-S9,CG18432 chr2R + chr2R_13424059_13424200 chr2R_13424085_13424200 chr2R_13424201_13424516;chr2R_13423960_13424058 100.00 100.00 100.00 100.00 99.28 100.00 100.00 100.00 99.70 100.00 100.00 99.70 100.00 100.00 100.00 100.00 100.00 99.38 100.00 99.76 100.00 99.66 100.00 99.65 100.00 99.42 100.00 99.69 100.00 99.53 98.48 100.00 99.40 99.63 100.00 99.65 99.65 100.00 99.69 99.77 99.59 100.00 100.00 99.62 100.00 100.00 99.68 100.00 99.75 100.00 99.71 99.38 100.00 100.00 99.58 100.00 100.00 100.00 K jcn_only_AD CG31159 chr3R + chr3R_18440851_18440950 chr3R_18440899_18440950 chr3R_18440951_18441462;chr3R_18440681_18440850 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 K intron_retention I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17180812_17181479,RI_chr3R_17181280_17181474,I_chr3R_17181974_17182126,RI_chr3R_17182422_17182532,RI_chr3R_17183087_17183245,RI_chr3R_17183087_17183726,I_chr3R_17183481_17200781,I_chr3R_17183927_17184513,I_chr3R_17183927_17185306,RI_chr3R_17184319_17184513,I_chr3R_17184319_17185084,I_chr3R_17184319_17185284,noncoding_18168,RI_chr3R_17184792_17185306,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,RI_chr3R_17189607_17189988,I_chr3R_17190098_17190207,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,I_chr3R_17197790_17197863,RI_chr3R_17198778_17199052,RI_chr3R_17198803_17199019,RI_chr3R_17198803_17199052 chr3R - chr3R_17179457_17200781 chr3R_17179456_17179457;chr3R_17200781_17200782 chr3R_17179071_17179456;chr3R_17200782_17200881 17.16 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA 17.65 NA NA NA NA NA NA NA NA NA K intron_retention lds,I_chr3R_3748184_3748242 chr3R + chr3R_3748184_3748268 chr3R_3748183_3748184;chr3R_3748268_3748269 chr3R_3748084_3748183;chr3R_3748269_3748342 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 2.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 2.06 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 2.67 K intron_retention CG7185 chr3L - chr3L_8303956_8304081 chr3L_8303955_8303956;chr3L_8304081_8304082 chr3L_8303593_8303955;chr3L_8304082_8304326 100.00 100.00 100.00 99.42 100.00 98.68 99.38 100.00 99.67 100.00 100.00 99.48 100.00 100.00 100.00 99.36 100.00 100.00 100.00 99.62 100.00 99.24 100.00 100.00 100.00 98.82 98.71 95.58 98.99 99.23 98.95 99.11 100.00 99.49 100.00 100.00 100.00 100.00 100.00 99.56 97.79 99.60 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.59 99.46 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor obst-E,RI_chr2L_5764272_5764331 chr2L - chr2L_5763369_5765960 chr2L_5764272_5765960 chr2L_5765961_5766199;chr2L_5762554_5763368 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA K jcn_only_AA Pcf11,RI_chr2R_10753287_10754988 chr2R - chr2R_10753272_10754988;chr2R_10753557_10754988;chr2R_10753581_10754988;chr2R_10753239_10754988 chr2R_10753287_10754988 chr2R_10754989_10755088;chr2R_10753187_10753238 3.03 9.52 3.85 3.03 0.00 0.00 18.18 6.45 2.08 8.33 0.00 0.00 NA 0.00 5.00 NA 4.35 NA 6.67 1.75 NA 0.00 2.04 0.00 NA 5.00 2.70 2.70 4.17 NA 3.70 NA 3.57 0.00 NA NA 1.82 3.03 2.63 6.38 NA 4.08 NA 4.76 NA 12.50 0.00 3.70 0.00 NA 7.14 NA NA NA 0.00 NA NA NA K alternative_donor CG32532 chrX - chrX_19427304_19428011;chrX_19427304_19428023 chrX_19427304_19427668 chrX_19427087_19427303;chrX_19428024_19428129 45.00 NA NA 11.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 40.00 NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG18619,I_chr2L_10264634_10264770,RI_chr2L_10265562_10265628 chr2L + chr2L_10264886_10264946 chr2L_10264885_10264886;chr2L_10264946_10264947 chr2L_10264822_10264885;chr2L_10264947_10265012 2.70 5.00 6.25 0.00 0.00 0.00 4.65 5.88 0.00 0.00 0.00 0.00 0.00 0.00 2.38 3.28 0.00 0.00 3.64 3.03 0.00 10.53 5.88 4.17 0.00 3.51 3.51 0.00 0.00 5.26 0.00 3.77 2.70 3.17 0.00 12.00 4.35 6.25 0.00 0.88 5.88 1.52 0.00 2.94 0.00 5.05 2.90 5.26 3.57 4.88 0.00 0.00 0.00 7.32 0.00 3.39 3.64 0.00 K intron_retention I_chr2L_5050018_5050955,I_chr2L_5050249_5050657,eIF-3p40,Rpn11 chr2L - chr2L_5052315_5052654 chr2L_5052314_5052315;chr2L_5052654_5052655 chr2L_5051637_5052314;chr2L_5052655_5053168 0.00 0.00 0.00 0.39 0.00 0.46 0.00 0.00 0.13 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.08 0.10 0.00 0.00 0.63 0.55 0.00 0.00 0.00 0.39 0.00 0.00 0.29 0.11 0.10 0.26 0.00 0.17 0.00 0.27 0.00 0.00 0.00 0.00 0.08 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.00 K intron_retention CG2950,I_chr2L_4844647_4845086,I_chr2L_4844952_4845086 chr2L - chr2L_4844243_4844308 chr2L_4844242_4844243;chr2L_4844308_4844309 chr2L_4844169_4844242;chr2L_4844309_4844646 97.44 98.18 98.00 98.36 100.00 97.30 97.83 98.08 98.82 94.74 100.00 98.55 100.00 96.43 97.14 97.14 96.97 93.55 100.00 100.00 96.97 94.12 97.67 98.31 96.15 100.00 96.55 92.68 100.00 96.88 97.50 94.12 85.71 98.21 93.33 96.15 97.50 94.92 98.63 98.28 100.00 97.37 100.00 97.78 89.19 95.00 97.44 95.00 100.00 93.18 97.40 97.56 94.29 92.73 100.00 95.12 96.15 100.00 K alternative_donor CG4774,RI_chr3R_21512589_21512972 chr3R - chr3R_21512589_21512703 chr3R_21512589_21512667 chr3R_21512489_21512588;chr3R_21512704_21512736 13.56 9.52 12.50 12.77 5.56 13.33 18.42 7.25 14.58 7.69 NA 14.63 10.71 18.52 17.24 8.64 13.64 11.54 15.79 14.29 10.71 NA 12.20 19.35 9.52 12.82 18.92 20.00 19.23 13.04 9.43 9.09 16.67 13.56 9.38 15.00 21.05 18.18 7.50 15.00 25.93 11.48 11.11 26.32 17.24 7.84 9.09 10.71 16.92 14.29 16.67 16.67 16.67 4.76 13.64 10.81 15.38 13.04 K alternative_last_exon CG6151,RI_chr3L_15803949_15805547,I_chr3L_15806727_15808816 chr3L - chr3L_15804494_15806345;chr3L_15803949_15806345 chr3L_15805342_15806345,chr3L_15805998_15806345 chr3L_15804425_15804493;chr3L_15803213_15803948 chr3L_15805029_15805341 chr3L_15806346_15806453 4.12 4.12 4.17 3.07 1.47 3.66 2.24 2.78 4.74 4.35 17.86 1.79 2.27 3.41 3.26 10.32 4.29 4.88 2.86 4.69 13.70 9.64 6.25 3.64 4.35 1.23 6.90 13.33 6.49 5.26 2.68 2.47 8.42 3.87 4.88 18.67 3.92 4.30 4.27 4.70 2.86 3.21 2.70 3.49 4.08 2.88 4.90 5.15 4.12 3.96 3.45 3.33 8.33 4.55 2.52 4.81 3.42 4.14 K intron_retention CG14194 chrX + chrX_19088052_19088456 chrX_19088051_19088052;chrX_19088456_19088457 chrX_19087981_19088051;chrX_19088457_19089031 2.33 5.56 0.00 9.09 3.39 0.00 3.30 4.12 3.41 2.33 11.11 0.85 3.23 1.61 1.27 6.49 0.00 1.67 0.00 4.43 5.88 2.70 0.00 4.95 1.72 0.00 5.49 2.13 6.35 0.00 1.72 0.00 1.41 1.03 4.08 14.75 3.10 2.38 0.00 2.70 0.00 2.38 3.77 0.00 1.85 0.00 0.00 5.88 3.96 3.17 3.53 5.88 0.00 0.00 0.00 0.00 3.12 0.00 K intron_retention Ppn,F_chr3R_24347009_24347078 chr3R - chr3R_24347954_24348203 chr3R_24347953_24347954;chr3R_24348203_24348204 chr3R_24347537_24347953;chr3R_24348204_24348354 0.00 0.00 0.00 2.75 0.00 0.00 0.00 1.42 3.42 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 1.66 0.00 0.00 3.08 5.88 0.00 0.00 3.77 NA 0.00 5.56 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 3.77 4.17 0.00 2.96 0.00 2.00 0.00 0.00 0.00 0.00 1.65 0.00 2.13 0.00 0.00 5.00 0.00 2.13 0.00 0.00 K alternative_donor CG14057,EI_chr3L_17037760_17037808 chr3L - chr3L_17037760_17037812 chr3L_17037760_17037808 chr3L_17037660_17037759;chr3L_17037813_17037908 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 1.23 1.89 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.66 0.00 0.00 1.83 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4822,I_chr2L_120081_120199,I_chr2L_120266_120420,I_chr2L_125267_128799,RI_chr2L_126228_126309 chr2L - chr2L_119555_119827 chr2L_119554_119555;chr2L_119827_119828 chr2L_119431_119554;chr2L_119828_120077 0.00 0.00 0.00 0.77 1.22 0.00 1.56 0.00 3.35 0.00 0.00 1.97 2.00 2.22 0.88 2.76 0.00 0.00 1.85 1.27 0.00 0.00 0.71 0.63 0.00 0.00 2.22 2.44 0.00 0.93 2.35 0.00 0.00 1.39 0.00 3.75 0.00 0.00 0.00 0.64 0.00 1.18 1.32 0.00 0.00 0.00 0.00 0.00 1.40 0.00 0.00 2.15 0.00 0.00 1.42 0.00 0.00 0.00 K jcn_only_AA CG31619 chr2L + chr2L_21711411_21712789 chr2L_21711411_21712768 chr2L_21711315_21711410;chr2L_21712790_21712966 99.02 99.02 100.00 97.24 97.80 96.74 100.00 98.64 96.49 97.03 NA 99.59 100.00 100.00 98.98 99.17 100.00 100.00 97.67 98.94 NA 97.09 99.39 98.52 100.00 98.04 98.96 100.00 97.37 99.07 96.77 100.00 99.21 97.16 100.00 100.00 98.44 97.37 98.73 98.77 100.00 98.02 98.77 99.50 98.53 98.21 100.00 100.00 99.04 97.87 100.00 100.00 99.00 100.00 100.00 98.72 100.00 100.00 K jcn_only_AA Adar,I_chrX_1668256_1682696,I_chrX_1674594_1674717 chrX + chrX_1673403_1674094 chrX_1673403_1673499 chrX_1673123_1673402 0.00 2.63 2.56 0.00 0.00 0.00 4.00 4.84 1.39 NA 0.00 0.00 3.12 0.00 0.00 1.75 0.00 3.85 0.00 1.64 0.00 0.00 0.00 0.00 0.00 2.86 2.50 NA NA NA 2.08 NA NA 0.00 0.00 NA 0.00 NA 0.00 7.41 NA 0.00 3.33 0.00 NA NA 0.00 NA 0.00 0.00 0.00 2.50 NA NA 0.00 0.00 0.00 NA K cassette CG17838,I_chr3R_16623576_16628011,I_chr3R_16625404_16631668 chr3R + chr3R_16624132_16631668;chr3R_16624132_16631671 chr3R_16624132_16628011;chr3R_16628274_16631671,chr3R_16628274_16631668 chr3R_16628012_16628273 chr3R_16624037_16624131;chr3R_16631672_16631768 30.00 25.71 26.67 41.07 22.22 22.50 26.92 16.39 29.23 51.43 33.33 31.34 21.43 25.00 27.03 26.19 26.09 27.03 26.92 23.68 40.74 51.72 25.30 32.00 32.43 27.78 25.00 45.83 34.21 35.14 24.24 31.25 36.92 25.86 33.33 29.63 41.43 34.04 28.36 36.17 40.00 25.33 23.08 33.33 69.23 25.00 30.00 47.22 34.55 33.33 22.45 26.47 45.45 31.58 25.00 42.86 50.00 58.62 K alternative_donor Mgat2,I_chr3R_25845406_25845472,I_chr3R_25845406_25846373 chr3R - chr3R_25845406_25845472;chr3R_25845406_25846373;chr3R_25845406_25847670 chr3R_25845406_25847371 chr3R_25845317_25845405;chr3R_25847671_25847898 88.24 88.24 94.44 82.61 83.33 86.67 83.33 82.35 92.31 80.00 88.89 79.17 87.50 84.62 81.82 88.24 87.50 91.67 93.75 82.76 90.00 63.64 91.67 95.45 84.62 85.71 81.25 80.00 78.26 88.24 89.47 100.00 89.29 90.48 92.31 85.71 88.24 84.62 90.00 92.86 83.33 89.29 90.91 90.48 88.89 94.44 92.31 86.21 88.46 91.67 86.96 91.67 100.00 92.31 84.21 84.62 80.00 92.86 K alternative_acceptor Syx7,I_chr3L_21439901_21439962 chr3L + chr3L_21439124_21439297 chr3L_21439124_21439260 chr3L_21439033_21439123;chr3L_21439298_21439475 0.68 0.00 2.41 0.00 0.00 0.00 5.71 0.79 1.38 0.00 0.00 1.28 2.78 0.00 0.00 0.00 0.00 0.00 1.03 0.46 0.00 3.51 0.87 0.98 3.57 3.49 0.00 2.22 4.35 0.00 1.01 1.27 1.47 0.68 2.47 10.00 0.00 0.00 0.00 1.87 9.30 1.47 0.00 0.00 0.00 1.27 0.00 3.12 0.79 1.18 1.06 0.00 0.00 0.00 0.98 0.00 0.00 0.00 K alternative_acceptor RpL36,RI_chrX_522912_523358,I_chrX_522932_523360,I_chrX_522949_523360 chrX - chrX_522912_523360;chrX_522932_523360 chrX_522949_523360 chrX_523361_523436;chrX_522849_522911 3.90 5.73 2.88 3.88 3.97 3.66 20.86 5.05 5.58 4.10 4.81 3.43 6.67 3.68 3.53 3.14 5.08 4.00 4.00 5.63 1.94 12.15 3.80 3.66 11.16 18.60 3.42 7.32 2.20 4.12 3.12 6.34 1.58 3.57 3.62 3.90 3.42 3.56 5.04 4.32 6.89 6.80 5.56 1.58 2.86 4.66 3.52 2.18 5.31 3.27 3.51 4.59 3.49 4.27 1.74 4.31 3.85 2.19 K cassette Mbs,I_chr3L_16045251_16046108,I_chr3L_16057100_16057329 chr3L + chr3L_16059210_16059712 chr3L_16059210_16059284;chr3L_16059414_16059712 chr3L_16059285_16059413 chr3L_16059161_16059209;chr3L_16059713_16059929 0.00 0.00 0.00 1.85 0.00 1.15 0.78 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 1.38 0.00 0.00 0.00 0.74 1.28 0.00 0.71 1.15 2.04 0.00 0.00 0.00 1.19 0.00 0.00 2.46 0.85 0.00 0.70 0.69 0.00 0.50 0.00 1.35 2.74 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 K intron_retention Elongin-C,I_chr2R_15332885_15332943,I_chr2R_15332885_15333223,I_chr2R_15332885_15333260,I_chr2R_15332885_15333452,I_chr2R_15333309_15333432,I_chr2R_15336252_15338966 chr2R - chr2R_15332885_15333432 chr2R_15332884_15332885;chr2R_15333432_15333433 chr2R_15332785_15332884;chr2R_15333433_15333532 1.22 1.00 1.40 0.34 1.45 0.00 0.77 1.24 1.09 1.87 2.00 1.18 0.63 1.20 0.90 1.95 1.41 1.06 0.99 1.22 2.74 2.20 1.88 0.80 1.41 1.01 1.69 1.27 1.74 1.82 0.90 1.64 0.79 1.54 1.16 1.26 1.65 3.35 1.03 0.80 1.43 1.13 0.70 0.89 1.75 0.92 0.85 1.01 1.90 1.24 1.74 0.00 0.58 1.38 1.75 1.15 1.22 0.79 K intron_retention CG4165,I_chrX_5317784_5317881,I_chrX_5321743_5321838 chrX + chrX_5317051_5317151 chrX_5317050_5317051;chrX_5317151_5317152 chrX_5316613_5317050;chrX_5317152_5317783 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG3967,RI_chr3L_9408567_9410728,RI_chr3L_9412100_9412179 chr3L - chr3L_9412100_9412194 chr3L_9412100_9412179 chr3L_9412000_9412099;chr3L_9412195_9412279 2.94 3.85 4.35 3.33 NA 5.00 0.00 NA 7.89 0.00 NA 5.41 NA 4.76 5.00 3.85 NA 0.00 NA 0.00 NA 4.17 2.04 2.44 0.00 NA 3.57 NA 11.43 4.17 3.45 0.00 0.00 2.94 4.17 0.00 2.13 0.00 0.00 2.38 2.86 0.00 NA 2.17 3.64 1.39 0.00 0.00 6.38 4.76 2.86 NA NA 6.45 0.00 3.23 4.35 2.99 K intron_retention TMS1 chr3L + chr3L_16407594_16407905 chr3L_16407593_16407594;chr3L_16407905_16407906 chr3L_16407384_16407593;chr3L_16407906_16408056 97.22 96.43 94.44 95.00 100.00 100.00 95.83 92.86 96.15 100.00 100.00 100.00 100.00 91.67 91.67 92.86 92.31 87.50 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 92.86 92.31 90.91 94.44 100.00 100.00 100.00 94.74 100.00 94.74 94.12 95.24 100.00 95.00 100.00 88.24 100.00 100.00 89.47 100.00 94.44 100.00 88.89 93.33 100.00 100.00 93.33 90.91 N jcn_only_AD CG14253,E_chr3R_22806425_22807258 chr3R + chr3R_22806824_22807254;chr3R_22806425_22807254;chr3R_22806725_22807254 chr3R_22806454_22807254 chr3R_22807255_22807473;chr3R_22806325_22806424 0.00 0.00 0.00 0.00 0.00 0.00 3.83 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Roughened,I_chr3L_1861677_1861777,I_chr3L_1861677_1861929,I_chr3L_1861677_1862177 chr3L - chr3L_1861677_1861777;chr3L_1861677_1862060 chr3L_1861677_1862177 chr3L_1861577_1861676;chr3L_1862178_1862277 0.51 1.11 0.54 0.46 0.00 0.67 0.51 0.85 0.74 0.00 0.66 0.61 0.76 0.69 0.00 0.00 0.00 0.60 0.64 0.48 0.00 0.51 0.00 0.00 0.00 0.00 0.61 0.00 0.60 0.00 0.63 0.00 0.00 1.27 0.68 0.49 0.41 0.00 0.49 1.63 0.00 1.09 0.69 0.68 0.53 0.41 0.00 0.00 1.12 0.00 0.52 0.67 0.68 0.88 0.51 0.00 0.00 0.00 N jcn_only_AA CG8080,REI_chr2R_4979159_4979234,I_chr2R_4979276_4979936,CG13741 chr2R - chr2R_4979377_4979936;chr2R_4979276_4979936 chr2R_4979159_4979936 chr2R_4979937_4980036;chr2R_4979059_4979158 99.14 100.00 NA 100.00 95.00 96.00 NA 96.30 100.00 NA NA 97.30 NA 100.00 96.67 100.00 100.00 NA 96.30 97.67 NA NA 100.00 100.00 NA NA NA NA NA NA 92.31 NA 100.00 97.37 NA NA 100.00 92.59 NA 97.44 NA 95.83 92.00 94.29 NA 100.00 NA 100.00 98.28 100.00 94.44 100.00 NA NA 97.37 100.00 100.00 100.00 K intron_retention CG4078,I_chrX_5644813_5644881,I_chrX_5645012_5645067,F_chrX_5650884_5651894 chrX + chrX_5644638_5644881 chrX_5644637_5644638;chrX_5644881_5644882 chrX_5644495_5644637;chrX_5644882_5644981 35.71 NA 33.33 60.00 NA NA 62.50 47.06 34.62 NA NA 33.33 NA 41.67 30.77 58.33 NA NA 41.67 35.71 NA NA 28.57 NA NA 40.00 53.85 NA NA NA 57.14 NA NA 52.38 NA NA NA NA 20.00 35.71 NA 33.33 NA 45.45 NA NA NA NA 47.62 25.00 20.00 NA 35.71 33.33 28.57 22.22 NA NA K jcn_only_AD CG3408,I_chr3L_9501587_9501663,RI_chr3L_9501725_9502450,I_chr3L_9504402_9504516 chr3L - chr3L_9501725_9502450 chr3L_9501725_9502438 chr3L_9501665_9501724;chr3L_9502451_9502550 100.00 NA 100.00 100.00 NA NA 95.00 100.00 100.00 NA NA 96.97 NA 100.00 NA 100.00 NA NA NA 100.00 NA NA 86.36 NA NA NA NA NA NA NA 96.15 100.00 100.00 96.88 95.24 NA NA NA 100.00 97.56 96.00 100.00 100.00 NA 100.00 100.00 NA 97.83 93.33 NA 95.00 NA NA NA NA 100.00 NA 96.43 N intron_retention CG16971,CG33229,I_chr3L_225856_225909,RI_chr3L_225919_226004,I_chr3L_229245_230186 chr3L + chr3L_224184_225725 chr3L_224183_224184;chr3L_225725_225726 chr3L_224174_224183;chr3L_225726_225849 100.00 100.00 100.00 100.00 100.00 100.00 80.49 100.00 84.42 100.00 100.00 78.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 77.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 77.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 K jcn_only_AD AnnIX chr3R + chr3R_16891137_16893167;chr3R_16891124_16893167;chr3R_16891033_16893167 chr3R_16891008_16893167 chr3R_16893168_16893221;chr3R_16890951_16891007 34.64 33.85 53.87 59.63 34.29 52.67 32.00 57.85 36.25 16.67 35.41 39.04 23.58 44.98 59.66 39.51 50.57 46.54 52.96 51.59 33.73 19.15 6.48 2.15 6.00 54.88 8.73 10.20 29.17 29.82 53.52 48.78 62.90 58.70 13.93 14.77 5.26 5.97 6.43 50.00 52.83 53.50 56.25 30.77 66.29 34.64 5.61 61.43 61.77 3.49 7.48 9.86 15.25 4.72 57.39 6.06 4.71 66.22 K intron_retention l(2)05714,RI_chr2L_4970785_4971075,CRE_chr2L_4970785_4971082,I_chr2L_4970785_4973718,RI_chr2L_4971343_4973718,CG8892 chr2L - chr2L_4970785_4971086 chr2L_4970784_4970785;chr2L_4971086_4971087 chr2L_4970685_4970784;chr2L_4971087_4971175 0.00 8.33 0.00 6.25 0.00 NA 0.00 6.06 0.00 NA 0.00 0.00 0.00 4.35 6.90 3.03 NA 8.70 0.00 6.25 5.88 0.00 0.00 6.45 0.00 0.00 0.00 NA NA 4.55 0.00 0.00 2.17 6.90 0.00 4.17 0.00 8.70 0.00 9.09 2.78 2.56 NA 0.00 0.00 8.33 0.00 0.00 6.25 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 9.09 K intron_retention I_chr3L_1494947_1496080,pUf68,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1501398_1501798 chr3L_1501397_1501398;chr3L_1501798_1501799 chr3L_1501351_1501397;chr3L_1501799_1501892 38.54 NA NA NA NA NA NA NA 72.73 NA NA 33.33 26.67 NA 43.75 NA NA NA 60.00 50.00 NA NA NA NA NA NA 14.29 NA NA NA 28.57 NA NA 63.64 NA NA NA NA NA 26.32 NA 46.67 NA 20.00 NA NA NA NA 56.25 NA 31.82 NA NA NA NA NA NA NA K intron_retention vsg,I_chr3L_9707724_9708265 chr3L + chr3L_9707724_9708843 chr3L_9707723_9707724;chr3L_9708843_9708844 chr3L_9707624_9707723;chr3L_9708844_9710799 0.00 0.28 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.21 0.00 0.00 0.00 0.13 0.00 0.34 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.72 0.33 0.00 0.00 0.00 0.15 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention sd,noncoding_23930,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15706564_15707768 chrX_15706563_15706564;chrX_15707768_15707769 chrX_15706468_15706563;chrX_15707769_15708328 90.91 100.00 100.00 92.86 100.00 88.89 100.00 75.00 91.67 NA 90.91 85.00 100.00 91.67 76.47 100.00 88.89 90.91 90.91 84.21 92.31 NA 88.89 72.73 80.00 NA 100.00 NA 100.00 93.75 100.00 NA 90.00 94.12 NA 91.67 77.78 NA NA 80.00 NA 83.33 90.91 NA NA NA NA 92.31 78.95 NA 90.00 NA NA NA 100.00 NA NA NA K alternative_acceptor CG13822,RI_chr3R_19503360_19503522 chr3R + chr3R_19503360_19503577 chr3R_19503360_19503522 chr3R_19503260_19503359;chr3R_19503578_19503622 2.78 1.45 1.27 4.29 0.00 0.00 2.60 1.01 3.31 6.90 0.00 0.97 2.63 0.00 0.00 1.19 0.00 1.56 1.59 0.68 0.00 3.85 6.00 2.13 2.78 2.27 7.89 4.17 4.65 2.56 18.92 5.71 4.76 2.91 2.86 3.92 2.44 4.35 2.82 4.00 13.79 2.46 0.00 4.26 6.25 14.00 3.95 8.16 2.01 3.85 3.30 8.82 0.78 5.00 0.00 8.00 0.40 1.75 K jcn_only_AD eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20341925_20342041;chr3L_20341636_20342041;chr3L_20341509_20342041;chr3L_20341865_20342041;chr3L_20341486_20342041;chr3L_20341522_20342041;chr3L_20341530_20342041;chr3L_20341629_20342041;chr3L_20341598_20342041;chr3L_20341759_20342041 chr3L_20341751_20342041 chr3L_20342042_20342306;chr3L_20341482_20341485 10.00 6.06 10.00 3.67 8.33 9.30 7.41 4.92 4.93 17.39 2.33 9.33 11.90 10.53 2.86 3.85 4.62 7.84 4.76 8.66 5.36 13.04 18.42 10.20 19.51 10.00 16.13 11.11 16.13 14.81 9.20 13.64 24.39 4.58 NA 20.69 16.33 13.89 17.24 5.93 13.64 2.58 7.02 8.16 8.11 22.22 17.95 25.00 4.90 23.40 29.03 12.50 30.00 NA 7.14 6.67 13.85 16.05 K intron_retention ash2 chr3R + chr3R_20478762_20478819 chr3R_20478761_20478762;chr3R_20478819_20478820 chr3R_20478504_20478761;chr3R_20478820_20479075 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.98 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG18766,I_chr3R_23069667_23070256,I_chr3R_23069667_23070318,RI_chr3R_23069667_23070361,I_chr3R_23069667_23070365 chr3R - chr3R_23069667_23070738;chr3R_23069667_23070732 chr3R_23069667_23070911 chr3R_23069567_23069666;chr3R_23070912_23070951 10.81 2.78 16.28 17.33 13.79 21.88 15.62 10.81 18.28 6.67 15.62 17.72 27.78 14.29 16.67 13.64 10.53 11.43 7.50 10.64 30.77 24.14 7.55 11.76 3.57 11.54 0.00 5.88 18.18 6.67 10.87 20.69 10.81 13.64 6.67 0.00 10.81 3.45 3.03 19.12 5.56 21.62 16.22 11.76 18.18 1.85 10.53 0.00 15.00 7.69 6.38 6.45 8.00 0.00 18.00 7.32 7.32 4.88 K intron_retention CG3500,RI_chr2R_19244231_19244378 chr2R - chr2R_19244681_19244741 chr2R_19244680_19244681;chr2R_19244741_19244742 chr2R_19244379_19244680;chr2R_19244742_19245088 12.07 11.90 7.58 32.26 6.67 7.27 13.33 12.00 7.32 17.65 23.81 8.64 0.00 6.25 5.45 0.00 15.00 7.55 5.71 7.43 15.38 21.62 19.72 15.52 15.56 13.95 20.69 20.00 32.43 21.95 25.58 11.11 11.84 8.00 10.87 33.33 32.14 25.93 12.07 6.57 28.57 13.51 5.00 16.33 6.80 12.33 11.43 9.76 7.41 17.24 21.57 15.38 6.94 8.57 8.16 14.81 14.67 4.21 K alternative_donor CG1746,I_chr3R_27044771_27044867,I_chr3R_27044771_27044990,I_chr3R_27044771_27045027,RI_chr3R_27044771_27045110,I_chr3R_27044771_27045132,RI_chr3R_27044771_27045188,I_chr3R_27044771_27045193,RI_chr3R_27044771_27045268 chr3R - chr3R_27044771_27044867;chr3R_27044771_27045257;chr3R_27044771_27045132;chr3R_27044771_27045027;chr3R_27044771_27045110;chr3R_27044771_27044831;chr3R_27044771_27044990;chr3R_27044771_27044895 chr3R_27044771_27045188 chr3R_27044671_27044770;chr3R_27045258_27045273 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.13 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.70 1.01 0.00 0.00 0.26 0.00 0.00 0.00 2.38 0.00 2.86 0.00 0.00 0.00 0.00 0.96 0.24 0.00 3.85 0.00 0.10 4.00 0.00 0.00 0.45 0.00 0.00 2.78 0.00 0.17 K alternative_donor nrv2,I_chr2L_6791842_6794492,I_chr2L_6793397_6794492,I_chr2L_6793405_6793916,I_chr2L_6793405_6794499,I_chr2L_6793684_6794492 chr2L - chr2L_6793405_6794492;chr2L_6793405_6794316;chr2L_6793405_6794551 chr2L_6793405_6794328 chr2L_6793305_6793404;chr2L_6794552_6794592 0.00 0.00 0.00 2.86 0.00 0.00 4.55 2.78 4.35 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 3.45 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.03 1.37 8.11 0.00 0.00 0.00 0.00 0.00 1.41 2.94 4.17 0.00 0.00 0.00 2.86 0.00 1.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.54 K intron_retention CG9674,I_chr3L_16785451_16785540,I_chr3L_16785706_16785748,I_chr3L_16793055_16800660 chr3L - chr3L_16785451_16785540 chr3L_16785450_16785451;chr3L_16785540_16785541 chr3L_16785351_16785450;chr3L_16785541_16785640 82.57 80.00 NA NA NA NA 90.00 90.91 83.33 NA NA 75.00 87.50 90.91 90.00 90.91 81.82 NA 87.50 84.21 NA 69.23 76.92 90.00 90.00 NA 90.00 NA 60.00 75.00 90.00 NA 77.27 88.89 NA 69.23 85.71 70.00 68.75 63.64 69.23 76.92 NA 84.62 NA 72.73 77.78 80.00 78.57 88.89 92.31 NA NA NA 88.89 80.00 NA NA K jcn_only_AA mub,RI_chr3L_21901021_21901163,I_chr3L_21908756_21909179 chr3L + chr3L_21914088_21914153;chr3L_21914088_21914156;chr3L_21914088_21914141 chr3L_21914088_21914192 chr3L_21914067_21914087;chr3L_21914193_21914427 8.00 NA NA NA NA NA NA NA 3.45 NA NA NA NA NA NA NA NA NA NA 11.54 NA 3.85 5.41 13.64 NA NA NA NA NA 5.00 NA NA 16.67 NA NA NA 2.63 3.70 3.85 8.00 NA 16.67 NA 18.18 NA NA NA 14.29 NA NA 12.50 NA NA NA NA NA NA NA K jcn_only_AD CG6689,RI_chr3R_7044164_7044221 chr3R - chr3R_7044164_7044234 chr3R_7044164_7044221 chr3R_7044064_7044163;chr3R_7044235_7044321 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 1.92 NA 0.00 4.44 0.00 4.17 0.00 NA 0.00 NA 0.00 2.13 NA 4.26 0.00 0.00 0.00 3.70 0.00 3.85 3.70 0.00 6.45 0.00 3.23 4.35 0.00 0.00 1.37 0.00 0.00 0.00 0.00 3.23 3.70 0.00 0.00 7.32 1.79 8.70 0.00 0.00 2.44 NA 2.56 0.00 7.69 0.00 1.22 5.88 K alternative_last_exon Su(var)2-10,RI_chr2R_5006333_5006392 chr2R + chr2R_5006553_5007257;chr2R_5006553_5008598,chr2R_5006553_5008568,chr2R_5006553_5008282,chr2R_5006553_5007804 chr2R_5006553_5009240 chr2R_5007258_5007336;chr2R_5008599_5008637 chr2R_5009241_5009953 chr2R_5006405_5006552 66.67 68.97 63.64 86.21 82.35 72.22 63.64 78.79 66.67 58.82 50.00 32.20 84.21 84.21 66.67 77.42 70.59 72.73 76.00 67.35 64.29 58.82 56.41 54.84 40.00 80.00 65.22 37.50 42.11 59.09 75.00 59.09 44.00 71.43 65.38 42.86 56.10 44.12 54.55 57.89 66.67 70.73 78.95 54.17 42.42 77.42 58.62 61.90 74.36 72.22 62.86 56.52 68.42 66.67 72.00 66.67 67.57 82.14 K intron_retention CG17184 chr3R - chr3R_7060167_7060229 chr3R_7060166_7060167;chr3R_7060229_7060230 chr3R_7059644_7060166;chr3R_7060230_7060697 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 2.30 0.00 2.08 0.00 0.00 2.33 0.00 0.00 5.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 3.92 0.00 0.00 0.00 2.20 1.08 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 K intron_retention CG9773 chr3R - chr3R_4501655_4501909 chr3R_4501654_4501655;chr3R_4501909_4501910 chr3R_4501295_4501654;chr3R_4501910_4502359 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 1.03 0.00 K jcn_only_AD AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9004021_9004854;chrX_9003790_9004854;chrX_9003918_9004854 chrX_9003728_9004854 chrX_9004855_9004862;chrX_9003721_9003727 61.54 NA NA 57.14 NA NA 50.00 66.67 61.54 NA NA 61.54 NA 57.14 55.00 65.12 NA NA 46.43 66.67 NA NA 85.71 NA NA 45.83 NA NA NA NA 61.76 NA NA 52.94 NA NA NA NA NA NA NA 56.25 NA NA NA NA NA NA 68.75 NA NA NA NA NA 64.71 NA NA NA K alternative_acceptor vimar,CG30156 chr2R - chr2R_2866103_2872916 chr2R_2866106_2872916 chr2R_2872917_2873214;chr2R_2865197_2866102 6.67 5.56 7.41 8.77 3.23 3.33 6.12 6.56 8.82 6.67 6.90 8.51 3.57 3.85 10.71 2.38 4.55 6.25 11.11 12.50 4.76 6.67 9.09 9.09 NA 3.33 6.67 11.11 2.33 7.41 7.50 15.38 5.56 7.27 6.67 2.94 2.70 13.04 6.67 6.49 9.09 5.56 3.85 4.76 8.00 6.67 5.00 5.00 6.38 14.29 13.79 8.00 7.14 NA 4.44 0.00 11.11 6.67 K intron_retention elm,I_chr3R_1479477_1479575 chr3R - chr3R_1479477_1480377 chr3R_1479476_1479477;chr3R_1480377_1480378 chr3R_1479377_1479476;chr3R_1480378_1480718 0.00 0.00 0.00 2.13 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6455,I_chr3R_17846331_17846423 chr3R - chr3R_17846331_17846546 chr3R_17846330_17846331;chr3R_17846546_17846547 chr3R_17846231_17846330;chr3R_17846547_17847242 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive Vha100-1,I_chr3R_24958227_24960770,RI_chr3R_24959152_24959582,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24958227_24959582,chr3R_24959684_24960770 chr3R_24958227_24958993,chr3R_24959152_24960770 chr3R_24959583_24959683 chr3R_24958994_24959151 chr3R_24958127_24958226;chr3R_24960771_24960870 70.49 63.29 75.00 88.14 53.33 63.04 75.36 70.49 60.36 72.92 67.57 81.97 86.36 73.68 70.00 77.78 60.53 61.54 89.74 50.00 67.31 64.29 68.03 66.67 80.25 78.43 76.29 84.13 82.14 73.26 70.91 79.17 71.03 56.58 72.22 73.44 67.42 67.03 68.91 70.43 82.93 66.91 68.29 77.63 62.12 73.17 66.22 81.33 66.99 77.78 69.72 72.88 73.77 65.71 67.80 64.06 70.24 78.67 K alternative_donor Rox8,I_chr3R_19872211_19872659,I_chr3R_19872214_19872630,I_chr3R_19872214_19872636,I_chr3R_19872214_19872838,I_chr3R_19876189_19876240 chr3R - chr3R_19872214_19873220;chr3R_19872214_19873214 chr3R_19872214_19873136 chr3R_19872114_19872213;chr3R_19873221_19873284 60.00 NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA NA 80.00 NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 50.00 NA NA NA NA NA NA NA NA NA K alternative_donor tws,I_chr3R_5960899_5960978,CG6241 chr3R - chr3R_5959310_5960163;chr3R_5959310_5960101;chr3R_5959310_5960041;chr3R_5959310_5959789;chr3R_5959310_5960049;chr3R_5959310_5960182;chr3R_5959310_5960158;chr3R_5959310_5959679 chr3R_5959310_5960026 chr3R_5958937_5959309;chr3R_5960183_5960224 47.62 57.14 40.00 48.00 50.00 60.00 43.48 45.45 37.93 40.00 42.86 50.00 26.67 41.67 42.86 43.33 50.00 40.00 41.18 52.17 50.00 37.50 41.67 37.50 50.00 55.56 40.00 37.50 55.56 55.56 53.85 50.00 58.33 40.74 37.50 44.44 25.00 75.00 33.33 55.56 66.67 50.00 45.45 44.44 66.67 62.50 66.67 47.62 31.25 60.00 40.00 42.86 50.00 66.67 43.75 60.00 66.67 53.85 K intron_retention lt,I_chr2L_22817840_22817968,RI_chr2L_22820498_22823377,RI_chr2L_22823579_22823640,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22820498_22832085 chr2L_22820497_22820498;chr2L_22832085_22832086 chr2L_22820398_22820497;chr2L_22832086_22832154 21.43 NA NA 5.45 NA NA NA 28.00 NA NA NA 10.53 NA NA NA 20.00 NA NA NA 30.77 NA NA NA NA NA 0.00 NA NA 21.43 NA NA NA NA 20.00 NA NA NA NA NA NA NA 28.57 NA NA NA NA NA 33.33 21.43 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG31169,I_chr3R_18209085_18209133 chr3R + chr3R_18209081_18209172 chr3R_18209081_18209133 chr3R_18209073_18209080;chr3R_18209173_18209201 62.13 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 71.88 NA NA NA NA NA NA NA NA 52.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,EF_chr2R_15349994_15351814,F_chr2R_15349994_15351846,noncoding_8037,I_chr2R_15350149_15350210,FI_chr2R_15350149_15351814,I_chr2R_15350437_15351814,I_chr2R_15350437_15351825,I_chr2R_15350905_15351814,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15350905_15351814;chr2R_15350285_15351814;chr2R_15350437_15351814 chr2R_15350149_15351814 chr2R_15351815_15351914;chr2R_15350068_15350148 14.29 0.00 12.50 25.00 0.00 10.00 11.11 14.29 4.55 0.00 0.00 7.14 16.67 10.00 25.00 10.00 11.11 16.67 20.00 9.52 28.57 6.67 16.67 18.18 40.00 27.27 0.00 20.00 0.00 9.09 28.57 0.00 14.29 22.73 14.29 14.29 0.00 0.00 20.00 14.29 33.33 17.65 10.00 33.33 NA 0.00 20.00 37.50 14.81 16.67 7.14 16.67 20.00 50.00 14.29 33.33 14.29 20.00 K intron_retention MED31,CG18271,I_chr3R_468381_468483,CE_chr3R_468381_468504 chr3R + chr3R_468151_468290 chr3R_468150_468151;chr3R_468290_468291 chr3R_468011_468150;chr3R_468291_468380 3.61 5.97 4.40 5.10 0.00 1.69 5.00 4.67 3.03 0.00 4.65 3.54 6.35 3.17 8.64 4.35 2.38 5.80 5.48 3.48 0.00 0.00 4.41 4.76 1.61 4.88 4.88 8.00 0.00 1.92 3.03 2.00 4.44 5.10 4.17 1.92 3.61 1.59 2.22 2.17 4.17 4.29 7.55 3.28 1.82 3.53 2.60 4.26 6.72 3.16 4.35 7.69 0.00 3.57 6.41 1.19 5.66 3.03 K intron_retention CG9063 chr3L - chr3L_22255797_22255853 chr3L_22255796_22255797;chr3L_22255853_22255854 chr3L_22253724_22255796;chr3L_22255854_22256037 6.25 0.00 0.00 20.59 NA NA 8.33 14.29 5.71 NA 11.76 4.76 5.56 5.56 15.38 26.32 NA NA 8.70 8.33 23.53 0.00 13.95 0.00 10.53 23.08 26.32 32.00 21.88 0.00 5.56 0.00 10.26 9.09 0.00 10.71 0.00 0.00 3.57 5.17 0.00 13.16 0.00 7.41 0.00 0.00 4.76 7.32 5.00 NA 6.25 4.76 NA NA 10.53 NA NA 13.33 K intron_retention lolal,I_chr2R_14043671_14043736,I_chr2R_14043671_14043740,I_chr2R_14043671_14043901,RI_chr2R_14043671_14044082,I_chr2R_14043671_14044191,I_chr2R_14043671_14044461,I_chr2R_14043671_14045289,I_chr2R_14043671_14045344 chr2R - chr2R_14043671_14043740 chr2R_14043670_14043671;chr2R_14043740_14043741 chr2R_14043571_14043670;chr2R_14043741_14043767 87.50 NA NA 81.82 88.89 NA NA 100.00 85.71 NA NA 78.57 NA 90.00 77.78 91.67 NA NA 100.00 85.71 NA 80.00 NA NA NA NA NA NA 88.89 NA NA NA NA 93.33 NA NA NA NA NA 75.00 NA 82.35 NA NA NA NA 87.50 NA 92.31 NA NA NA NA NA 63.64 88.89 NA NA K intron_retention Arf79F,I_chr3L_22863166_22863946,I_chr3L_22863166_22864419,RI_chr3L_22863251_22863389,RI_chr3L_22863251_22863952,I_chr3L_22863251_22864009,I_chr3L_22863251_22864188,I_chr3L_22863251_22864501,I_chr3L_22863251_22864629,RI_chr3L_22863251_22864763,I_chr3L_22863251_22864866,RI_chr3L_22871119_22871250,I_chr3L_22871351_22871733 chr3L - chr3L_22863251_22864559 chr3L_22863250_22863251;chr3L_22864559_22864560 chr3L_22863151_22863250;chr3L_22864560_22864601 3.27 3.25 3.55 3.17 2.56 2.13 3.13 4.38 2.38 2.34 3.50 4.48 3.41 2.61 5.62 3.39 5.23 3.07 4.66 3.18 2.48 3.54 3.72 3.27 1.31 4.05 3.87 6.09 4.88 2.78 3.21 1.96 3.00 3.85 2.19 5.26 4.15 4.17 2.70 4.33 2.16 3.19 4.00 4.50 2.98 2.61 5.00 2.72 2.85 2.35 4.19 3.82 4.62 2.38 3.39 3.53 2.56 1.72 K alternative_donor l(2)k01209,I_chr2R_13308079_13310771,I_chr2R_13309452_13310771,RI_chr2R_13310877_13311160 chr2R + chr2R_13309417_13311160;chr2R_13309452_13311160;chr2R_13308486_13311160 chr2R_13308079_13311160 chr2R_13311161_13311260;chr2R_13307979_13308078 55.84 58.46 52.63 50.72 41.67 68.00 48.28 62.16 53.15 55.26 60.98 59.80 48.57 50.00 56.36 57.32 54.05 59.57 51.02 55.12 60.87 55.13 59.32 52.33 58.82 43.48 55.10 67.74 44.00 60.53 43.10 57.69 66.97 51.81 60.61 55.84 54.35 62.50 56.25 57.00 71.05 52.13 51.43 49.44 53.62 57.33 64.41 43.66 53.76 53.62 69.23 50.98 60.00 58.82 52.63 63.64 60.29 56.94 K intron_retention CG5118 chr2L - chr2L_1170957_1171029 chr2L_1170956_1170957;chr2L_1171029_1171030 chr2L_1170752_1170956;chr2L_1171030_1171643 4.00 4.84 9.52 7.69 4.88 4.35 2.38 9.30 2.70 0.00 4.17 6.35 11.54 4.76 14.00 5.00 2.94 4.00 0.00 12.24 4.00 10.81 0.00 0.00 2.00 2.70 0.00 4.88 5.56 0.00 15.38 4.17 1.47 9.84 1.79 6.06 4.00 0.00 3.33 5.63 0.00 2.63 0.00 8.89 5.36 3.85 2.30 2.50 6.06 3.03 0.00 2.13 2.04 0.00 9.09 4.76 1.00 1.27 K intron_retention RhoGAP15B chrX + chrX_16843611_16845017 chrX_16843610_16843611;chrX_16845017_16845018 chrX_16842887_16843610;chrX_16845018_16847301 56.52 NA 63.64 83.33 NA 45.45 30.77 85.71 56.52 NA NA 52.63 NA NA 45.45 66.67 NA 60.00 70.00 61.11 NA 25.49 45.45 NA NA NA 36.36 NA 25.00 NA NA NA 41.67 66.67 NA NA 50.00 NA NA 58.33 NA 66.67 NA 60.00 NA NA NA 44.44 72.73 NA NA NA NA NA 55.56 NA NA NA K intron_retention CG3632,RI_chrX_16195880_16196242 chrX + chrX_16190824_16191693 chrX_16190823_16190824;chrX_16191693_16191694 chrX_16190763_16190823;chrX_16191694_16191751 54.55 60.00 47.06 33.33 NA NA 68.00 50.00 59.46 NA NA 46.43 57.14 NA 33.33 48.48 62.50 NA 50.00 57.14 NA NA 31.25 54.55 NA 45.45 57.14 60.00 54.55 NA 42.86 NA NA 52.00 63.64 NA 44.44 NA 63.64 70.00 NA 45.16 NA 63.64 NA 70.00 NA NA 51.72 NA 60.00 50.00 NA NA 25.00 NA 58.33 NA N jcn_only_AA cbs,I_chr2R_9340512_9340593 chr2R + chr2R_9339532_9339826 chr2R_9339532_9339794 chr2R_9339433_9339531;chr2R_9339827_9340240 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28.57 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA 24.24 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 K intron_retention mth chr3L - chr3L_344302_344366 chr3L_344301_344302;chr3L_344366_344367 chr3L_344107_344301;chr3L_344367_344538 1.94 4.44 1.67 6.56 2.56 0.00 2.27 2.26 1.94 0.00 0.00 3.19 0.00 2.44 6.06 4.35 2.82 0.00 2.78 3.92 0.00 0.00 6.98 2.13 6.67 0.00 5.00 5.13 NA 5.56 1.56 0.00 8.70 1.64 0.00 3.57 3.23 0.00 0.00 0.00 0.00 4.92 0.00 0.00 0.00 0.00 4.17 0.00 3.06 7.32 2.04 2.70 NA 0.00 1.35 0.00 1.85 0.00 K intron_retention Abi,RI_chr3R_9946195_9946332 chr3R - chr3R_9946345_9946416 chr3R_9946344_9946345;chr3R_9946416_9946417 chr3R_9946333_9946344;chr3R_9946417_9946432 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Jhebp29,RI_chr2R_20857941_20857992,RI_chr2R_20857941_20858127 chr2R + chr2R_20857941_20857994 chr2R_20857940_20857941;chr2R_20857994_20857995 chr2R_20857841_20857940;chr2R_20857995_20858071 100.00 100.00 100.00 100.00 98.25 98.39 100.00 100.00 99.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.21 100.00 94.12 100.00 98.73 100.00 100.00 98.61 100.00 96.67 100.00 100.00 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.70 100.00 100.00 100.00 98.41 98.28 100.00 100.00 97.56 100.00 100.00 100.00 100.00 98.08 100.00 100.00 100.00 100.00 100.00 K cassette Mitf,I_chr4_1225009_1225220,I_chr4_1225890_1225947 chr4 + chr4_1224415_1225216 chr4_1224415_1224987;chr4_1225009_1225216 chr4_1224988_1225008 chr4_1224159_1224414;chr4_1225217_1225376 18.99 14.29 38.46 45.45 18.75 NA 6.67 22.73 17.50 NA 7.69 22.22 5.26 26.67 33.33 20.00 14.29 27.27 15.79 19.23 NA NA NA NA NA NA NA NA NA NA 35.71 NA NA 21.43 NA NA NA NA NA 12.50 NA 18.52 15.38 NA NA NA NA NA 23.81 NA NA NA NA NA 15.79 NA NA NA K alternative_donor Rpb11,I_chr2L_17410178_17410250,I_chr2L_17410178_17410317 chr2L - chr2L_17410178_17410317 chr2L_17410178_17410251 chr2L_17410088_17410177;chr2L_17410318_17410350 100.00 98.63 98.46 100.00 100.00 100.00 100.00 100.00 99.34 97.06 100.00 98.31 100.00 100.00 100.00 99.31 98.39 100.00 98.91 100.00 100.00 100.00 100.00 98.75 95.12 98.61 98.39 98.04 100.00 100.00 100.00 98.44 100.00 99.17 100.00 98.11 98.48 97.87 100.00 98.85 98.08 100.00 96.88 100.00 98.44 99.05 100.00 98.48 100.00 100.00 100.00 98.18 100.00 100.00 100.00 99.06 98.68 99.24 K alternative_acceptor CG14411 chrX + chrX_14726994_14727180 chrX_14726994_14727176 chrX_14726671_14726993;chrX_14727181_14727210 98.39 100.00 100.00 96.77 95.45 100.00 97.06 97.44 97.87 100.00 95.65 100.00 95.24 96.30 100.00 95.83 94.74 100.00 100.00 97.67 100.00 97.56 100.00 98.39 100.00 100.00 96.97 96.67 98.31 97.62 100.00 95.65 98.46 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 98.28 100.00 96.55 98.21 100.00 97.30 98.39 97.83 98.28 98.00 96.55 100.00 100.00 95.00 100.00 100.00 98.21 K alternative_donor CG41378,I_chr2RHet_1545717_1621473,I_chr2RHet_1545717_1621569,I_chr2RHet_1606049_1607768,RI_chr2RHet_1606049_1621284,noncoding_9480 chr2RHet - chr2RHet_1606049_1621636;chr2RHet_1606049_1621569 chr2RHet_1606049_1621473 chr2RHet_1605949_1606048;chr2RHet_1621637_1621662 97.44 94.12 100.00 100.00 100.00 100.00 93.33 97.06 94.87 NA 100.00 97.50 92.86 94.74 93.33 100.00 100.00 90.91 89.47 87.50 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 88.89 100.00 85.71 87.50 93.75 100.00 100.00 100.00 100.00 90.91 92.86 88.89 96.55 100.00 92.86 77.78 93.75 100.00 91.67 97.37 100.00 100.00 100.00 100.00 87.50 94.44 100.00 93.75 85.71 K intron_retention Atg8a,I_chrX_10659836_10661185 chrX - chrX_10659569_10659637 chrX_10659568_10659569;chrX_10659637_10659638 chrX_10658894_10659568;chrX_10659638_10659835 0.00 0.83 0.00 0.79 0.00 0.00 0.23 0.26 0.36 0.00 0.37 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.36 0.75 2.30 1.10 0.00 0.00 0.00 0.00 0.30 0.00 0.31 0.43 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.45 0.52 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.77 0.00 K alternative_donor Dip-B chr3R + chr3R_9609979_9610038 chr3R_9609982_9610038 chr3R_9610039_9611387;chr3R_9609919_9609978 100.00 100.00 98.72 100.00 98.41 100.00 98.97 100.00 99.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.41 98.53 100.00 98.15 100.00 100.00 100.00 100.00 100.00 98.85 98.99 100.00 98.82 98.91 100.00 100.00 100.00 100.00 98.51 100.00 100.00 100.00 100.00 98.51 98.47 100.00 100.00 97.83 99.05 100.00 100.00 99.21 100.00 100.00 100.00 100.00 100.00 100.00 98.73 100.00 100.00 K alternative_acceptor Sp7 chr3R + chr3R_3588116_3588182 chr3R_3588116_3588178 chr3R_3587729_3588115;chr3R_3588183_3588287 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 K intron_retention TSG101 chr3L + chr3L_16836334_16836396 chr3L_16836333_16836334;chr3L_16836396_16836397 chr3L_16836327_16836333;chr3L_16836397_16836440 99.57 100.00 99.19 99.55 98.99 100.00 99.40 99.46 100.00 98.68 100.00 99.45 100.00 100.00 99.24 100.00 100.00 100.00 99.15 99.58 99.01 98.10 100.00 100.00 100.00 100.00 99.39 94.12 100.00 99.12 99.27 100.00 99.25 98.86 99.04 100.00 99.45 100.00 99.46 99.57 100.00 100.00 100.00 99.41 99.13 100.00 99.43 98.89 99.42 99.48 100.00 100.00 100.00 99.28 100.00 99.37 100.00 100.00 N jcn_only_AD CG32529 chrX + chrX_19795641_19795900;chrX_19795687_19795900 chrX_19795522_19795900 chrX_19795901_19798251;chrX_19794649_19795521 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 79.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Sec61beta,I_chr2R_10506408_10506473 chr2R + chr2R_10506408_10506463 chr2R_10506407_10506408;chr2R_10506463_10506464 chr2R_10506341_10506407;chr2R_10506464_10506539 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14184,I_chr3L_20021160_20021210,I_chr3L_20021910_20021979 chr3L - chr3L_20021160_20021214 chr3L_20021159_20021160;chr3L_20021214_20021215 chr3L_20021060_20021159;chr3L_20021215_20021285 0.00 2.56 0.00 4.00 0.00 0.00 0.00 6.90 2.70 0.00 9.52 5.71 0.00 2.44 0.00 0.00 0.00 0.00 2.13 5.06 0.00 0.00 0.00 0.00 0.00 6.06 5.26 4.17 3.03 0.00 1.82 0.00 0.00 3.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 2.70 0.00 0.00 0.00 0.00 0.00 1.45 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 K jcn_only_AD CaMKII,I_chr4_1069766_1069812,I_chr4_1071236_1071307,RI_chr4_1071236_1071315,I_chr4_1071489_1071884,RI_chr4_1071489_1071968,I_chr4_1071569_1071884,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1071236_1071968;chr4_1071236_1071884;chr4_1071236_1071813;chr4_1071236_1071319 chr4_1071236_1072054 chr4_1071136_1071235;chr4_1072055_1072059 0.00 NA 3.23 4.49 NA NA 2.00 1.10 1.35 NA NA 0.00 0.00 0.00 3.33 0.85 0.00 NA 0.00 1.96 3.57 0.00 0.00 NA NA NA NA NA 0.00 0.00 1.64 0.00 0.00 1.22 NA 0.00 NA NA NA 3.12 0.00 3.33 0.00 0.00 4.00 0.00 NA 1.75 0.00 NA NA NA NA NA 0.00 NA NA 1.98 K jcn_only_AA CG10462 chr2L - chr2L_19733580_19733638 chr2L_19733591_19733638 chr2L_19733639_19734280;chr2L_19733396_19733579 97.20 98.31 98.28 97.48 100.00 92.86 97.32 96.45 97.63 100.00 88.89 99.14 96.15 97.62 100.00 96.70 97.26 96.55 98.73 96.84 97.37 98.44 96.05 91.25 98.53 96.23 97.20 100.00 100.00 97.14 96.47 96.88 97.03 95.73 98.41 92.45 90.67 100.00 96.83 95.12 98.95 93.02 100.00 100.00 96.43 93.24 98.28 91.18 98.21 94.29 95.60 98.48 100.00 97.56 95.60 100.00 92.47 90.91 K intron_retention wech,I_chr2R_3373673_3377324,I_chr2R_3376705_3376837 chr2R - chr2R_3371070_3371151 chr2R_3371069_3371070;chr2R_3371151_3371152 chr2R_3370918_3371069;chr2R_3371152_3371304 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 4.17 0.00 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 7.14 7.41 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 12.50 0.00 0.00 0.00 3.64 NA 0.00 0.00 0.00 NA 12.50 0.00 0.00 0.00 NA 5.56 0.00 0.00 NA 0.00 0.00 NA 0.00 K intron_retention SNF4Agamma,I_chr3R_16982134_16982890 chr3R + chr3R_17036802_17036862 chr3R_17036801_17036802;chr3R_17036862_17036863 chr3R_17036511_17036801;chr3R_17036863_17037041 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Adam,I_chr2R_5856741_5856974,I_chr2R_5856741_5857245,I_chr2R_5857058_5857250,I_chr2R_5857078_5857245 chr2R + chr2R_5856741_5856974 chr2R_5856741_5856965 chr2R_5856641_5856740;chr2R_5856975_5857057 98.99 100.00 99.35 99.07 98.88 98.48 98.38 99.39 98.93 99.32 99.05 99.36 100.00 98.73 99.26 98.54 98.62 98.27 99.16 98.71 100.00 99.60 99.20 98.59 98.33 100.00 98.65 99.18 99.20 98.99 99.39 99.55 98.39 98.05 98.75 100.00 98.83 98.90 98.83 98.66 99.21 98.66 100.00 98.73 98.99 98.48 99.60 98.97 99.58 98.60 99.25 97.64 98.94 99.20 98.75 99.05 97.80 99.18 K jcn_only_AA cnn,I_chr2R_9332229_9332269,I_chr2R_9333096_9336812,RI_chr2R_9334834_9336719,I_chr2R_9347031_9370659 chr2R - chr2R_9332200_9332269 chr2R_9332229_9332269 chr2R_9332270_9332369;chr2R_9332129_9332199 0.38 0.00 2.02 0.76 0.00 0.00 1.09 0.72 1.01 1.69 0.00 0.55 0.00 1.30 0.00 0.00 1.56 1.09 0.00 0.38 0.00 0.00 0.00 3.26 0.00 0.00 1.65 0.73 0.00 1.09 1.72 0.00 2.70 2.65 1.11 2.80 0.83 0.00 0.00 1.89 2.86 2.38 0.00 0.93 0.00 0.00 0.00 2.86 0.64 0.00 1.44 1.28 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG12428,I_chr3R_23531574_23532266 chr3R - chr3R_23531574_23531786;chr3R_23531574_23531981 chr3R_23531574_23532276 chr3R_23531474_23531573;chr3R_23532277_23532366 36.36 50.00 44.44 52.94 20.00 16.67 36.36 36.36 53.85 50.00 NA 53.85 NA 40.00 28.57 12.50 42.86 25.00 14.29 57.14 40.00 31.25 46.67 25.00 14.29 33.33 57.14 58.33 16.67 30.00 8.33 NA 25.00 37.50 63.64 14.29 14.29 57.14 0.00 28.57 0.00 53.85 0.00 44.44 NA 42.86 44.44 25.00 50.00 25.00 36.36 50.00 NA 33.33 57.14 0.00 57.14 70.00 K intron_retention CG9967 chr2L - chr2L_2309703_2310125 chr2L_2309702_2309703;chr2L_2310125_2310126 chr2L_2309516_2309702;chr2L_2310126_2310449 0.00 NA NA NA NA NA NA NA 19.23 NA NA 5.00 NA NA NA NA NA NA NA 12.50 NA NA 0.00 8.70 13.33 NA 14.29 5.56 0.00 0.00 NA 3.70 4.00 NA NA 0.00 0.00 0.00 2.56 0.00 6.25 0.00 NA 5.56 0.00 0.00 0.00 7.41 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 K intron_retention CG3505,CG3508 chr3R + chr3R_10483278_10483365 chr3R_10483277_10483278;chr3R_10483365_10483366 chr3R_10483262_10483277;chr3R_10483366_10483544 5.56 0.00 9.09 7.69 7.69 12.50 NA 0.00 6.90 NA 0.00 6.45 NA 0.00 7.14 9.68 NA 0.00 NA 8.82 NA NA 0.00 0.00 NA NA 5.88 0.00 NA NA 8.70 NA NA 5.26 NA NA 5.56 NA 12.50 NA NA 3.57 NA 5.56 NA NA 14.29 NA 7.50 NA 8.33 0.00 0.00 NA 0.00 NA 0.00 0.00 K alternative_donor CG32702,C_chrX_9453782_9453856,I_chrX_9468866_9473514 chrX - chrX_9453782_9453856 chrX_9453782_9453851 chrX_9453682_9453781;chrX_9453857_9453956 75.00 NA NA 66.67 NA NA 75.00 90.00 87.50 NA 75.00 70.00 NA NA NA NA NA 72.73 NA 62.50 NA 84.21 NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Rpb8 chr3L + chr3L_21722217_21722287 chr3L_21722216_21722217;chr3L_21722287_21722288 chr3L_21721921_21722216;chr3L_21722288_21722991 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.67 NA NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10326,I_chr3R_12469631_12469699 chr3R + chr3R_12469631_12469739 chr3R_12469630_12469631;chr3R_12469739_12469740 chr3R_12469531_12469630;chr3R_12469740_12469799 1.28 3.39 1.37 4.65 2.78 1.39 4.35 1.67 1.03 0.00 0.00 3.01 0.00 3.08 2.11 0.00 2.27 0.00 1.41 2.55 4.65 0.00 0.00 1.28 0.00 2.13 0.00 0.00 4.76 0.00 2.13 5.00 0.00 0.85 0.00 0.00 0.00 3.64 0.00 4.03 6.06 2.86 0.00 0.00 0.00 2.78 0.00 5.63 2.27 3.77 2.22 0.00 0.00 0.00 0.00 1.43 0.00 0.00 K jcn_only_AA CG17233,I_chr3L_20232803_20232962,RI_chr3L_20232898_20232962 chr3L - chr3L_20232714_20232962;chr3L_20232645_20232962;chr3L_20232711_20232962 chr3L_20232648_20232962 chr3L_20232963_20233016;chr3L_20232147_20232644 4.55 9.38 6.45 4.08 8.00 NA 4.17 2.94 6.78 NA NA 4.44 NA NA 6.45 4.76 0.00 4.55 9.09 16.07 0.00 0.00 7.69 9.52 NA NA 0.00 NA 0.00 2.63 4.76 NA 4.55 2.33 3.70 9.52 4.23 3.45 9.52 3.70 8.33 3.77 4.35 12.50 4.17 4.55 NA 2.33 0.00 5.00 10.26 5.88 4.55 NA 3.70 5.26 3.03 7.50 K mutually_exclusive CG6206,I_chr2L_10459281_10459879,I_chr2L_10459518_10459620,I_chr2L_10459518_10459661 chr2L + chr2L_10459281_10459661,chr2L_10459796_10459879 chr2L_10459281_10459383,chr2L_10459518_10459879 chr2L_10459662_10459795 chr2L_10459384_10459517 chr2L_10459181_10459280;chr2L_10459880_10459979 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 97.56 98.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 98.46 100.00 100.00 93.33 100.00 100.00 100.00 100.00 98.68 100.00 100.00 100.00 95.24 100.00 100.00 98.68 100.00 100.00 100.00 100.00 100.00 98.00 100.00 100.00 100.00 K intron_retention bmm,I_chr3L_14772123_14772190 chr3L - chr3L_14770708_14770777 chr3L_14770707_14770708;chr3L_14770777_14770778 chr3L_14770439_14770707;chr3L_14770778_14770866 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon CG7341,noncoding_13313,CG32195,I_chr3L_18112632_18112890 chr3L + chr3L_18106282_18107468;chr3L_18106282_18106718 chr3L_18106282_18112890,chr3L_18106282_18112871 chr3L_18107469_18107857;chr3L_18106719_18107164 chr3L_18112891_18114107 chr3L_18106149_18106281 61.54 53.33 53.33 60.00 58.33 58.33 63.64 65.22 63.33 50.00 45.45 60.00 70.00 66.67 47.06 73.08 63.64 60.00 69.23 60.71 54.55 50.00 63.16 63.16 60.00 73.33 62.50 29.63 50.00 52.63 66.67 71.43 68.00 60.87 45.45 50.00 56.25 69.23 72.22 56.52 45.45 62.96 72.73 57.14 50.00 60.00 69.23 33.33 66.67 73.68 68.42 75.00 61.54 72.73 70.59 70.59 76.19 55.00 K jcn_only_AA HLH106,RI_chr3L_19787260_19787323 chr3L + chr3L_19787260_19787323;chr3L_19787260_19787998;chr3L_19787260_19787663 chr3L_19787260_19787773 chr3L_19787254_19787259 0.00 3.45 0.00 1.03 0.00 0.00 0.00 0.00 1.33 NA 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 NA 2.22 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA 2.33 2.78 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 0.00 K alternative_donor Cdk4,RI_chr2R_12471503_12471656 chr2R + chr2R_12467432_12468346;chr2R_12467241_12468346;chr2R_12467275_12468346;chr2R_12467474_12468346;chr2R_12467225_12468346;chr2R_12467227_12468346;chr2R_12467261_12468346;chr2R_12467039_12468346 chr2R_12467202_12468346 chr2R_12468347_12468520;chr2R_12467030_12467038 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Hlc chrX - chrX_21257309_21257376 chrX_21257319_21257376 chrX_21257377_21257805;chrX_21256593_21257308 100.00 100.00 100.00 100.00 100.00 100.00 99.01 100.00 99.21 100.00 97.96 100.00 100.00 100.00 100.00 99.02 97.96 100.00 98.63 99.19 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 99.06 100.00 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.61 97.56 100.00 98.15 K alternative_donor vkg,I_chr2L_5027222_5027297,I_chr2L_5027222_5028118 chr2L - chr2L_5027222_5027297;chr2L_5027222_5028118 chr2L_5027222_5027351 chr2L_5027122_5027221;chr2L_5028119_5028218 81.82 88.89 85.71 76.67 86.36 88.24 76.92 71.79 87.10 85.71 88.46 73.17 76.60 81.48 69.70 86.36 91.67 80.00 70.00 76.06 80.00 75.00 87.50 84.62 83.33 64.29 80.95 100.00 88.89 100.00 86.67 81.82 71.43 76.92 71.43 66.67 93.94 100.00 85.00 83.33 71.43 78.43 75.00 90.00 50.00 70.00 85.71 75.00 76.92 84.62 84.62 85.71 78.57 75.00 83.33 80.00 92.31 85.00 K intron_retention sol chrX + chrX_21227675_21227733 chrX_21227674_21227675;chrX_21227733_21227734 chrX_21227168_21227674;chrX_21227734_21228000 0.00 0.00 3.51 3.70 0.00 0.00 0.00 0.00 1.40 0.00 4.17 4.35 0.00 0.00 4.11 0.00 0.00 0.00 1.96 1.90 3.92 8.41 0.00 0.00 3.03 2.99 0.00 0.00 9.09 0.00 0.00 0.00 3.57 2.20 2.33 0.00 1.74 1.27 0.00 0.00 0.00 1.59 0.00 0.00 0.00 1.59 0.00 0.00 0.95 1.20 2.27 1.75 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA e(y)3,I_chrX_19528120_19528166 chrX - chrX_19528105_19528166 chrX_19528120_19528166 chrX_19528167_19528266;chrX_19528020_19528104 1.97 1.25 2.44 2.04 1.15 2.60 3.20 3.55 1.50 1.28 0.00 4.71 0.00 1.15 0.96 2.56 0.00 3.12 2.88 2.70 1.09 2.35 1.91 1.52 0.00 3.06 2.06 0.00 0.99 3.45 2.30 1.89 0.82 2.42 3.08 2.20 1.69 1.98 1.97 1.79 0.00 2.13 1.22 2.33 0.00 2.38 0.00 4.35 3.33 0.00 0.84 0.00 0.00 4.44 3.48 5.17 1.49 2.88 K alternative_acceptor brat,I_chr2L_19134277_19143634,EI_chr2L_19145845_19145958,RI_chr2L_19145845_19146761 chr2L + chr2L_19145845_19166084 chr2L_19145845_19145958 chr2L_19145819_19145844;chr2L_19166085_19166125 13.64 12.50 14.29 8.00 14.29 11.11 18.18 10.53 13.64 11.11 25.00 22.22 10.00 16.67 12.50 15.38 8.33 20.00 5.56 17.65 12.50 10.00 16.67 11.11 14.29 20.00 13.33 16.67 12.50 14.29 8.33 50.00 10.00 11.76 20.00 12.50 18.18 12.50 12.50 11.76 50.00 10.53 12.50 16.67 25.00 25.00 33.33 22.22 12.50 12.50 13.33 11.11 50.00 50.00 7.14 33.33 33.33 16.67 K alternative_acceptor I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_927771_929704,CG32021,RI_chr4_928193_928245,I_chr4_928482_929704,noncoding_20815,I_chr4_929811_932812 chr4 - chr4_928482_929704;chr4_927771_929704 chr4_928551_929704 chr4_929705_929804;chr4_927741_927770 72.23 62.96 82.93 49.02 66.67 78.79 78.70 80.77 77.78 79.10 32.50 74.71 65.52 63.89 58.00 46.81 62.07 83.33 50.00 54.13 72.73 74.79 51.79 72.53 78.48 82.35 80.65 62.93 64.55 77.38 69.05 NA 75.61 78.79 81.36 72.83 60.00 75.68 77.24 84.89 60.71 69.41 87.10 64.14 57.14 86.41 59.72 71.20 63.01 75.45 78.35 87.50 64.44 71.93 83.72 56.06 58.67 47.69 K jcn_only_AD pyd,I_chr3R_4654041_4664113,I_chr3R_4749124_4756437 chr3R - chr3R_4668562_4690507 chr3R_4668562_4670637 chr3R_4668392_4668561 14.29 13.89 14.29 16.95 11.11 13.95 24.14 21.15 15.00 21.43 22.22 7.27 15.00 10.34 12.00 23.68 13.04 NA 14.29 17.74 13.64 43.75 14.71 10.00 9.68 11.54 12.28 63.16 25.00 6.06 10.81 NA 21.88 25.00 6.67 17.95 16.00 10.53 11.48 11.27 NA 10.84 24.00 7.84 NA 0.00 16.67 13.79 23.53 22.22 23.33 23.53 NA 14.29 6.67 9.09 NA NA N jcn_only_AA RI_chrX_22094836_22142377,noncoding_25169 chrX + chrX_22120111_22120222 chrX_22120111_22120219 chrX_22120097_22120110;chrX_22120223_22120518 9.78 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA NA NA NA 14.55 N alternative_acceptor CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_261460_261555;chr4_261460_263086 chr4_261460_263113 chr4_261360_261459;chr4_263114_263305 14.29 18.18 21.43 10.53 12.50 9.09 3.33 3.23 13.95 NA 0.00 17.39 7.69 0.00 20.00 17.50 8.33 9.09 12.50 11.11 14.29 20.00 14.29 0.00 0.00 28.57 16.67 NA 0.00 33.33 29.41 0.00 16.67 11.11 20.00 0.00 20.00 20.00 NA 8.33 33.33 18.52 6.67 0.00 20.00 0.00 22.22 25.00 16.67 0.00 11.11 0.00 25.00 16.67 31.25 NA 14.29 14.29 K jcn_only_AD ScpX chr2L + chr2L_18831359_18831722 chr2L_18831387_18831722 chr2L_18831723_18832046;chr2L_18831240_18831358 100.00 100.00 97.87 100.00 100.00 100.00 96.77 100.00 100.00 100.00 96.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.09 100.00 100.00 100.00 98.39 100.00 98.95 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.94 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.84 100.00 100.00 99.07 100.00 K alternative_acceptor CG10462 chr2L - chr2L_19734281_19734469;chr2L_19734413_19734469 chr2L_19734410_19734469 chr2L_19734470_19734941;chr2L_19733639_19734280 35.62 31.25 31.43 39.34 36.36 25.00 43.94 35.53 32.61 38.46 30.43 32.86 43.24 35.14 38.46 42.67 28.21 42.42 41.30 31.34 36.36 38.71 31.11 28.95 25.00 36.36 33.33 47.62 32.14 28.57 38.46 36.00 47.92 35.62 27.59 34.15 31.25 29.17 37.50 31.37 35.90 33.82 46.15 29.41 50.00 42.11 43.75 35.71 34.21 32.43 42.11 37.04 40.00 37.50 38.30 35.48 33.33 28.85 K intron_retention dgt3 chr2R - chr2R_16881369_16881430 chr2R_16881368_16881369;chr2R_16881430_16881431 chr2R_16881010_16881368;chr2R_16881431_16881759 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 5.56 0.00 0.00 K mutually_exclusive musashi,C_chr3R_21387506_21389801,I_chr3R_21402020_21409940 chr3R + chr3R_21345452_21400605,chr3R_21400645_21420795 chr3R_21345452_21389801,chr3R_21389850_21420795 chr3R_21400606_21400644 chr3R_21389802_21389849 chr3R_21345433_21345451;chr3R_21420796_21421324 25.00 NA NA NA NA NA NA NA 42.86 NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG11148,RI_chr4_886921_887162 chr4 - chr4_886921_887601;chr4_886921_887595;chr4_886921_887591 chr4_886921_887162 chr4_886821_886920;chr4_887602_887637 3.28 NA 3.12 3.39 0.00 4.17 7.14 1.47 1.49 NA 4.17 5.66 0.00 7.50 0.00 2.56 0.00 3.57 2.27 2.82 4.00 NA 0.00 NA 20.00 0.00 NA NA 6.45 NA 0.00 NA 0.00 3.28 NA 8.33 NA NA NA 4.17 NA 4.48 2.94 7.41 NA NA NA 3.85 5.26 NA 10.00 NA NA NA 2.44 NA NA 2.33 K intron_retention CG17490 chr2L + chr2L_22431020_22432684 chr2L_22431019_22431020;chr2L_22432684_22432685 chr2L_22431014_22431019;chr2L_22432685_22433056 94.44 92.86 100.00 94.44 90.00 100.00 100.00 82.86 97.37 NA 88.89 89.47 100.00 93.33 81.25 98.18 94.44 100.00 100.00 94.74 100.00 100.00 88.89 100.00 NA 100.00 NA NA NA NA 96.00 NA NA 96.97 88.89 NA NA NA 88.89 100.00 NA 86.67 89.47 100.00 NA 88.89 92.31 90.00 97.06 92.31 91.67 90.91 90.00 100.00 95.00 100.00 92.31 92.86 K jcn_only_AA CG10979,I_chr3R_1621563_1621607,RI_chr3R_1621781_1621856 chr3R + chr3R_1621563_1621632 chr3R_1621563_1621607 chr3R_1621463_1621562;chr3R_1621633_1621707 0.00 0.00 0.00 0.00 0.00 5.13 1.39 0.00 0.00 3.23 3.03 3.80 0.00 0.00 1.89 1.54 3.23 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 5.45 0.00 0.00 0.00 6.25 2.78 0.00 0.00 2.38 1.92 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 1.45 NA 0.00 5.88 NA 0.00 2.56 0.00 4.76 0.00 K alternative_acceptor CG31731,I_chr2L_13786850_13786922 chr2L + chr2L_13784595_13784785 chr2L_13784595_13784756 chr2L_13784471_13784594;chr2L_13784786_13784986 0.00 0.00 0.00 5.77 0.00 0.00 2.56 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 2.00 0.00 4.35 2.94 0.00 0.00 0.00 0.00 1.85 NA NA 1.49 0.00 0.00 0.00 0.00 2.27 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA N cassette Tm1,I_chr3R_11126545_11128874,I_chr3R_11128245_11128874 chr3R + chr3R_11127409_11129362 chr3R_11127409_11128874;chr3R_11128945_11129362 chr3R_11128875_11128944 chr3R_11127346_11127408;chr3R_11129363_11130547 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention drpr,I_chr3L_1718154_1723579,I_chr3L_1720385_1723579,CG18171 chr3L - chr3L_1720170_1723579 chr3L_1720169_1720170;chr3L_1723579_1723580 chr3L_1719923_1720169;chr3L_1723580_1723679 16.75 13.27 9.91 36.99 12.77 14.16 14.48 22.22 14.02 5.88 22.41 31.29 10.43 12.87 14.73 20.21 14.29 12.50 17.54 15.35 15.66 18.10 23.61 17.14 13.85 14.41 23.53 23.08 24.44 24.49 16.41 24.32 19.18 15.79 22.64 47.37 15.73 15.69 14.77 17.24 28.57 13.68 16.48 17.46 17.02 19.05 14.04 23.44 16.75 13.70 18.99 23.26 18.18 22.22 14.69 13.04 20.37 15.38 K alternative_acceptor Klc,I_chr3L_12741058_12741155,I_chr3L_12741783_12742943,I_chr3L_12741838_12743062 chr3L - chr3L_12741042_12741155 chr3L_12741058_12741155 chr3L_12741156_12741255;chr3L_12740958_12741041 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Hsc70-3,I_chrX_11699076_11699138,I_chrX_11699076_11699158,I_chrX_11699076_11699260,EI_chrX_11699076_11699573,I_chrX_11699076_11700062 chrX - chrX_11699076_11699321;chrX_11699076_11699923 chrX_11699076_11699335 chrX_11698976_11699075;chrX_11699924_11699938 1.79 0.00 1.79 0.68 0.00 5.26 4.00 2.05 0.93 3.17 0.00 2.38 0.00 0.00 3.17 0.78 0.00 6.00 1.15 2.50 0.00 0.00 0.00 1.89 0.00 0.00 1.23 4.55 2.08 0.00 2.63 2.00 2.06 0.89 0.00 0.00 0.00 0.00 4.00 0.00 1.49 1.81 1.61 2.99 7.25 0.79 2.94 1.91 0.59 2.06 2.53 4.41 1.92 0.00 3.66 4.00 3.30 3.07 K alternative_acceptor hts,I_chr2R_15286599_15294119,I_chr2R_15311185_15312327,I_chr2R_15311303_15312026 chr2R - chr2R_15286305_15286530 chr2R_15286311_15286530 chr2R_15286531_15286598;chr2R_15286061_15286304 54.35 60.34 57.75 59.46 64.06 51.47 50.00 51.25 54.66 50.00 48.15 55.23 58.82 59.32 52.50 66.15 58.21 53.85 53.57 56.41 63.27 55.56 56.34 56.06 50.00 53.76 44.00 31.25 62.50 42.31 54.17 51.35 52.70 57.76 54.35 47.73 50.00 58.97 59.74 57.01 54.84 55.42 51.43 52.83 61.36 61.02 50.94 51.85 59.24 50.00 52.63 52.38 53.85 57.14 60.20 53.45 58.54 53.45 K alternative_donor I_chr3L_18892015_18892405,RpL26,I_chr3L_18892244_18892405,I_chr3L_18892340_18892405,I_chr3L_18892434_18892499 chr3L + chr3L_18892240_18892405 chr3L_18892340_18892405 chr3L_18892406_18892433;chr3L_18892172_18892239 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.16 0.00 0.00 0.00 0.44 0.00 0.13 0.43 0.21 0.29 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 2.41 0.52 0.00 0.44 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.67 0.08 0.00 0.00 0.42 0.71 0.00 0.23 0.16 0.87 0.00 0.00 0.32 0.00 0.14 0.79 0.47 0.25 K intron_retention myoglianin,RI_chr4_712986_714006,E_chr4_716066_716347,RI_chr4_716066_716482,RI_chr4_716153_716613,E_chr4_716172_716351 chr4 - chr4_716066_716482 chr4_716065_716066;chr4_716482_716483 chr4_716053_716065;chr4_716483_716490 100.00 100.00 88.89 96.77 NA 100.00 96.43 100.00 97.50 NA 88.89 100.00 100.00 100.00 88.89 100.00 100.00 90.00 91.67 100.00 88.89 NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA 96.00 83.33 100.00 NA NA NA NA 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K alternative_donor Tango13,I_chrX_13480088_13480998,I_chrX_13483861_13483954 chrX + chrX_13480088_13483954 chrX_13480126_13483954 chrX_13483955_13484054;chrX_13479988_13480087 4.11 4.17 5.88 3.81 4.11 1.47 4.11 4.31 3.78 3.94 0.00 2.14 0.00 3.17 3.19 4.21 1.41 16.00 1.54 2.53 1.27 9.43 3.53 5.60 3.57 3.12 4.59 5.41 8.22 5.79 3.70 7.81 4.00 3.51 5.38 6.25 4.02 3.12 4.71 5.00 1.92 4.17 3.51 3.42 11.94 6.36 4.88 5.83 5.15 5.88 4.35 3.85 4.55 4.55 3.70 4.35 6.56 3.95 K intron_retention yellow-f2,CG17327 chr3R - chr3R_8820042_8820149 chr3R_8820041_8820042;chr3R_8820149_8820150 chr3R_8819386_8820041;chr3R_8820150_8820539 64.00 52.50 64.00 70.59 55.00 73.68 82.76 65.96 63.64 44.44 66.67 50.79 88.89 62.50 80.65 62.16 73.68 62.50 91.67 47.62 69.70 82.69 54.72 58.70 73.08 68.18 77.08 52.94 75.00 73.53 90.79 77.42 60.78 65.00 56.25 60.00 56.92 60.98 53.33 61.22 72.73 63.64 65.00 60.53 37.78 71.19 60.78 50.94 46.97 72.73 64.00 60.00 58.06 65.62 80.77 64.44 70.83 65.31 K alternative_acceptor CG31997,I_chr4_175592_176390 chr4 - chr4_175575_175652 chr4_175592_175652 chr4_175653_175721;chr4_175514_175574 100.00 100.00 99.19 100.00 100.00 99.11 100.00 99.40 100.00 100.00 100.00 99.54 100.00 100.00 100.00 100.00 99.03 100.00 99.33 100.00 100.00 98.08 99.20 100.00 98.46 99.03 100.00 100.00 98.25 100.00 99.38 100.00 100.00 99.48 99.01 100.00 100.00 100.00 100.00 100.00 100.00 99.55 100.00 99.15 100.00 99.38 100.00 98.51 100.00 99.14 100.00 100.00 100.00 99.00 100.00 100.00 99.09 99.02 K intron_retention CG4572,FI_chr3R_15689914_15690042 chr3R - chr3R_15689038_15689310 chr3R_15689037_15689038;chr3R_15689310_15689311 chr3R_15688239_15689037;chr3R_15689311_15689913 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.62 K intron_retention CG1640,RI_chrX_13271013_13271890,I_chrX_13271541_13271890 chrX + chrX_13268419_13271890 chrX_13268418_13268419;chrX_13271890_13271891 chrX_13268274_13268418;chrX_13271891_13271980 2.80 2.50 4.88 0.53 4.17 4.46 3.41 3.23 3.75 3.64 2.00 3.26 3.80 5.68 5.45 1.37 0.00 4.21 4.20 3.37 2.90 2.80 1.85 4.26 1.54 1.52 1.87 8.82 1.33 3.03 1.80 0.00 5.03 5.56 2.04 4.90 2.94 1.16 2.13 2.80 2.00 3.03 2.11 2.54 1.47 1.91 0.00 2.95 4.43 0.92 2.34 0.00 1.00 1.20 3.55 2.80 1.85 0.89 K intron_retention Arf51F,I_chr2R_11210733_11210953 chr2R + chr2R_11210247_11210953 chr2R_11210246_11210247;chr2R_11210953_11210954 chr2R_11209979_11210246;chr2R_11210954_11211053 5.56 3.66 3.60 4.31 9.09 7.79 12.04 5.16 6.63 6.56 5.48 24.53 8.57 3.66 5.56 3.42 9.23 6.61 4.81 4.37 2.47 15.09 6.59 5.56 16.39 13.25 8.70 7.89 13.41 5.68 4.40 4.12 2.56 7.14 3.19 32.76 4.76 9.26 5.95 6.79 6.67 4.37 9.86 9.41 9.71 3.80 4.62 3.50 4.73 4.35 6.96 7.25 2.41 3.12 5.22 5.21 3.19 2.79 K cassette CG10737 chr2R + chr2R_15061871_15062386 chr2R_15061871_15062081;chr2R_15062289_15062386 chr2R_15062082_15062288 chr2R_15061844_15061870;chr2R_15062387_15062591 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.38 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157794_157864 chr4 + chr4_162747_162825 chr4_162754_162825 chr4_162826_163517;chr4_160896_162746 100.00 100.00 100.00 100.00 98.59 100.00 99.44 100.00 100.00 97.83 100.00 99.49 98.81 100.00 100.00 100.00 100.00 100.00 100.00 99.52 100.00 100.00 100.00 100.00 100.00 98.89 100.00 100.00 96.00 98.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.58 100.00 98.95 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Kdm4B,seq chr2R - chr2R_9074825_9074898 chr2R_9074824_9074825;chr2R_9074898_9074899 chr2R_9074486_9074824;chr2R_9074899_9075321 0.00 0.00 3.45 25.00 0.00 0.00 8.00 5.71 5.26 0.00 NA 1.54 NA 0.00 0.00 6.12 NA 8.70 6.67 2.41 0.00 NA 0.00 11.76 NA NA 12.50 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 8.33 NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 4.35 NA NA 0.00 K intron_retention dco,RI_chr3R_26883647_26884261,I_chr3R_26883651_26883729,RI_chr3R_26883651_26886096,I_chr3R_26884350_26884670,I_chr3R_26884350_26886671,I_chr3R_26884350_26886791,RI_chr3R_26884365_26886096,I_chr3R_26884365_26886798 chr3R - chr3R_26883651_26886096 chr3R_26883650_26883651;chr3R_26886096_26886097 chr3R_26883551_26883650;chr3R_26886097_26886186 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA NA 8.33 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_last_exon CG31108,RI_chr3R_20940642_20940700,CG31510 chr3R - chr3R_20941880_20948282 chr3R_20946869_20948282 chr3R_20941834_20941879 chr3R_20943147_20946868 chr3R_20948283_20948615 83.33 78.57 68.75 70.59 80.00 90.91 81.82 80.65 91.18 100.00 87.50 70.97 85.71 75.00 80.00 88.46 85.71 71.43 93.75 88.46 80.00 80.00 85.00 93.33 90.00 70.59 87.50 77.78 73.33 78.57 68.42 87.50 77.78 74.19 84.62 91.67 91.67 80.00 81.25 80.77 57.14 78.79 85.71 84.21 85.71 100.00 91.67 75.00 89.66 100.00 100.00 100.00 85.71 88.89 76.19 81.82 77.78 83.33 K intron_retention CG3884 chr2R - chr2R_8838855_8839350 chr2R_8838854_8838855;chr2R_8839350_8839351 chr2R_8837909_8838854;chr2R_8839351_8839383 8.33 6.25 12.50 21.74 6.67 8.00 23.08 8.33 5.41 NA NA 8.33 NA 8.70 11.43 9.09 10.53 4.35 16.67 5.41 0.00 NA 9.52 7.69 NA NA 13.04 33.33 NA 7.69 11.43 4.35 11.54 8.00 13.33 NA 20.00 0.00 8.82 15.38 NA 10.00 22.73 0.00 7.41 15.38 5.56 15.38 11.36 NA 6.90 NA 0.00 5.56 4.17 5.56 3.12 5.00 K intron_retention CG42593,F_chrX_7841357_7841447 chrX + chrX_7835229_7835288 chrX_7835228_7835229;chrX_7835288_7835289 chrX_7834816_7835228;chrX_7835289_7835447 22.00 16.00 15.62 22.86 5.88 12.50 32.14 22.58 17.39 NA 15.00 18.00 12.50 21.43 22.73 31.82 29.17 31.03 24.14 13.21 25.93 25.00 20.00 20.00 23.08 0.00 13.33 25.00 16.67 17.86 25.81 38.46 33.33 19.30 18.18 0.00 20.00 23.08 21.43 15.69 NA 17.02 33.33 23.08 38.46 47.83 42.86 21.43 19.15 46.15 18.18 25.00 NA 50.00 20.00 26.32 31.25 26.67 K jcn_only_AD RhoGAP15B chrX + chrX_16843485_16845017 chrX_16843611_16845017 chrX_16845018_16847301;chrX_16842887_16843484 6.74 6.49 9.52 6.67 6.67 11.59 13.83 2.65 8.59 7.41 8.51 11.54 3.08 8.06 8.79 6.32 3.57 8.93 4.94 6.82 9.80 67.95 6.25 4.80 6.10 7.41 7.09 0.00 26.56 9.09 3.23 3.03 12.35 6.74 11.43 11.69 5.52 3.49 4.80 5.65 20.69 4.00 0.00 6.19 6.67 10.00 13.33 25.45 3.45 6.45 5.66 7.14 9.09 6.00 7.69 5.56 1.54 9.76 K mutually_exclusive Aldh-III,RE_chr2R_3355332_3355720,I_chr2R_3356541_3356614,RI_chr2R_3357578_3357636,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3355332_3356614,chr2R_3356731_3356864 chr2R_3355332_3355926,chr2R_3356043_3356864 chr2R_3356615_3356730 chr2R_3355927_3356042 chr2R_3355296_3355331;chr2R_3356865_3357018 75.00 75.25 67.54 78.30 68.42 70.45 80.43 66.94 74.87 73.08 83.67 80.13 69.23 71.26 77.23 65.62 72.73 75.56 74.34 64.98 84.51 48.94 73.45 77.68 60.71 56.94 76.19 74.07 61.54 69.64 77.36 80.65 73.21 77.70 77.05 89.13 71.55 72.04 73.48 68.14 52.38 77.09 79.37 75.56 80.82 70.49 81.45 78.33 75.17 80.41 77.31 73.85 79.10 70.21 75.00 75.86 84.55 79.66 K intron_retention CG9338,CG31675 chr2L + chr2L_20865586_20866935 chr2L_20865585_20865586;chr2L_20866935_20866936 chr2L_20865412_20865585;chr2L_20866936_20867640 1.34 2.36 1.26 5.88 0.00 1.15 1.54 2.09 2.27 0.00 2.76 1.70 0.00 2.78 2.11 1.88 1.52 1.34 1.66 2.24 1.38 4.88 1.69 1.60 0.00 0.00 2.82 0.00 0.00 0.00 0.00 1.94 0.00 2.86 0.00 0.00 2.27 2.74 0.81 1.46 0.00 1.59 1.32 2.01 0.88 1.73 0.68 1.18 2.32 0.91 1.01 0.00 0.76 0.48 1.34 0.00 1.25 2.56 K jcn_only_AA bt,I_chr4_792222_794646,I_chr4_794938_795011 chr4 + chr4_794938_795011 chr4_794938_795002 chr4_794838_794937;chr4_795012_795111 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 98.59 NA 100.00 100.00 100.00 100.00 100.00 98.36 100.00 NA 100.00 100.00 96.15 NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA 98.00 NA 95.65 98.63 NA NA 100.00 100.00 NA 93.10 NA 97.92 100.00 97.06 NA 87.50 100.00 NA 100.00 95.45 NA 91.67 NA NA 100.00 NA NA 100.00 K intron_retention CG16718,EI_chr3R_15465136_15466705 chr3R - chr3R_15465136_15466820 chr3R_15465135_15465136;chr3R_15466820_15466821 chr3R_15465036_15465135;chr3R_15466821_15466878 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.56 NA 15.00 16.67 NA NA NA NA 6.25 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 14.29 NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA K alternative_donor CG13771 chr2L - chr2L_6663068_6663123;chr2L_6663068_6663127 chr2L_6663068_6663131 chr2L_6662854_6663067;chr2L_6663132_6663374 80.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 83.33 NA NA 77.78 NA NA NA NA NA 87.50 NA 80.00 NA NA NA NA NA NA NA NA NA 55.56 K intron_retention Clic chrX - chrX_13708920_13715957 chrX_13708919_13708920;chrX_13715957_13715958 chrX_13708410_13708919;chrX_13715958_13716374 0.73 0.66 0.94 1.22 0.76 0.60 0.91 1.35 1.31 0.00 0.71 1.41 1.25 1.27 0.91 1.27 1.20 1.54 0.98 1.11 0.51 1.63 0.70 0.49 0.42 0.93 1.01 1.98 0.86 0.75 0.48 0.00 0.92 1.01 0.73 0.52 0.29 0.00 0.13 0.37 0.33 0.96 1.26 0.27 0.00 0.00 0.00 0.52 0.74 0.73 0.38 0.21 0.00 0.30 0.77 0.37 0.00 0.24 K jcn_only_AA spir,I_chr2L_20334199_20334626,I_chr2L_20336550_20339058 chr2L + chr2L_20336405_20336469;chr2L_20336405_20336463 chr2L_20336405_20336466 chr2L_20336338_20336404;chr2L_20336470_20336529 73.24 67.39 73.81 65.08 70.83 76.60 77.63 72.67 68.04 80.56 74.39 68.90 73.24 75.00 76.53 75.83 72.73 75.79 70.48 73.74 72.06 68.47 66.67 78.46 75.36 78.49 76.27 67.76 70.55 76.69 70.22 73.24 70.23 70.30 64.36 78.43 76.64 61.80 69.23 73.20 71.74 73.66 75.00 76.87 75.84 79.31 69.81 72.47 71.43 68.00 75.59 60.00 83.33 73.74 68.42 71.84 73.95 75.15 K jcn_only_AA mld,atl chr3R + chr3R_20451535_20457511 chr3R_20451535_20457504 chr3R_20451524_20451534;chr3R_20457512_20457813 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 96.55 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 94.74 100.00 100.00 97.73 100.00 96.77 95.35 100.00 100.00 96.67 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 NA 100.00 K alternative_acceptor CG7849 chr2R + chr2R_1964879_1964943 chr2R_1964879_1964927 chr2R_1964666_1964878;chr2R_1964944_1965538 100.00 90.91 100.00 NA 87.50 NA NA NA 90.00 NA NA 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 85.71 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 91.67 NA 100.00 NA NA 90.00 NA NA 100.00 84.62 100.00 100.00 91.67 100.00 100.00 100.00 NA N alternative_donor CG41320 chr3LHet + chr3LHet_1532849_1545754 chr3LHet_1545188_1545754 chr3LHet_1545755_1545890;chr3LHet_1532736_1532848 0.00 0.00 0.00 0.00 NA 0.00 20.00 0.00 12.50 NA 0.00 50.00 NA 0.00 0.00 20.00 0.00 0.00 0.00 25.00 0.00 NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA 14.29 0.00 NA NA 0.00 0.00 NA NA 20.00 0.00 0.00 NA 0.00 0.00 0.00 20.00 NA NA NA 0.00 0.00 0.00 NA NA NA K alternative_acceptor CG7971,I_chr3L_1659363_1659845,I_chr3L_1667736_1667806 chr3L - chr3L_1659991_1661108 chr3L_1660858_1661108 chr3L_1661109_1661165;chr3L_1659846_1659990 1.86 1.92 2.13 2.47 0.00 0.00 6.82 3.03 2.11 2.44 2.94 4.17 5.41 3.23 2.00 5.17 0.00 3.03 2.38 1.45 2.22 0.00 1.16 1.25 2.78 3.23 2.38 2.00 1.27 0.00 1.79 1.61 0.54 2.90 1.92 1.85 0.00 0.00 0.00 0.60 2.11 1.87 NA 1.32 1.32 1.19 1.69 0.60 2.50 3.23 0.00 0.00 0.00 0.00 1.61 2.50 2.50 0.56 K alternative_donor Df31,RE_chr2L_21628206_21629662,I_chr2L_21628206_21629666,I_chr2L_21628210_21628515,I_chr2L_21628210_21628944,I_chr2L_21628210_21629216,EI_chr2L_21628210_21629715,REI_chr2L_21628210_21629884,I_chr2L_21628224_21629666 chr2L - chr2L_21628210_21629216;chr2L_21628210_21629666;chr2L_21628210_21628944;chr2L_21628210_21629715;chr2L_21628210_21629884 chr2L_21628210_21628515 chr2L_21628124_21628209;chr2L_21629885_21629918 0.44 0.44 0.34 0.51 0.58 0.62 0.30 0.45 0.22 0.20 0.56 0.65 0.48 0.45 0.45 0.47 0.32 0.57 0.35 0.42 0.40 0.56 0.42 0.55 0.24 0.33 1.07 1.28 0.66 0.57 0.49 0.24 0.97 0.42 0.61 0.73 0.44 0.18 0.83 0.40 0.25 0.42 0.31 0.27 0.39 0.49 0.47 0.74 0.48 0.53 0.56 0.30 0.20 0.38 0.13 0.44 0.16 0.27 K jcn_only_AD SD23414,CG9132,I_chrX_16693612_16694097,I_chrX_16693612_16694529,I_chrX_16696492_16696589 chrX - chrX_16693612_16694097;chrX_16693612_16696171 chrX_16693612_16694558 chrX_16693512_16693611;chrX_16696172_16696233 100.00 98.84 98.89 97.87 100.00 100.00 100.00 100.00 99.34 100.00 100.00 100.00 100.00 100.00 98.80 100.00 100.00 100.00 100.00 100.00 100.00 98.72 98.93 99.15 100.00 100.00 97.12 98.18 100.00 100.00 98.95 97.67 100.00 100.00 100.00 98.48 100.00 99.19 100.00 100.00 100.00 99.30 98.39 98.77 100.00 98.97 98.65 100.00 100.00 100.00 99.37 98.08 100.00 100.00 100.00 100.00 100.00 98.28 K intron_retention CG11526 chr3L - chr3L_3322843_3322909 chr3L_3322842_3322843;chr3L_3322909_3322910 chr3L_3322484_3322842;chr3L_3322910_3324636 14.75 12.61 22.62 30.16 21.52 17.39 26.61 14.29 17.65 9.64 26.39 15.00 9.52 15.00 25.00 15.84 21.33 12.50 16.44 14.75 23.08 13.56 17.86 9.93 28.72 31.94 17.73 26.13 44.38 12.43 11.94 11.79 10.68 18.55 16.51 16.19 10.49 12.61 13.45 11.16 25.85 17.02 17.74 9.33 14.66 12.50 9.15 13.21 19.01 14.21 13.86 14.77 12.10 8.70 13.00 12.21 9.91 8.58 K intron_retention CG11486,RE_chr3L_3084894_3085203 chr3L + chr3L_3086337_3086397 chr3L_3086336_3086337;chr3L_3086397_3086398 chr3L_3085865_3086336;chr3L_3086398_3086514 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045251_16045854 chr3L_16045275_16045854 chr3L_16045855_16045954;chr3L_16045216_16045250 14.29 NA NA NA NA NA 14.29 NA 22.73 NA NA NA NA NA NA 11.11 NA NA NA 10.34 NA NA NA NA NA NA NA 19.05 NA NA NA NA 5.00 4.00 NA 25.00 NA NA NA 0.00 NA 15.38 NA NA NA NA NA 15.00 NA NA NA NA NA NA NA NA NA NA K intron_retention CG4822,I_chr2L_120081_120199,I_chr2L_120266_120420,I_chr2L_125267_128799,RI_chr2L_126228_126309 chr2L - chr2L_119236_119430 chr2L_119235_119236;chr2L_119430_119431 chr2L_119227_119235;chr2L_119431_119554 76.69 NA 70.00 94.44 70.00 63.64 93.75 76.47 88.89 NA NA 79.17 80.00 NA 66.67 70.00 87.50 60.00 91.67 72.73 60.00 90.00 65.00 88.89 66.67 50.00 86.67 75.00 NA 60.00 63.64 NA NA 70.59 NA 78.95 NA NA NA 76.92 90.00 83.33 80.00 NA NA NA NA 77.78 82.14 NA 69.23 77.78 NA NA 64.29 NA NA NA K intron_retention cno,I_chr3R_999718_999986,I_chr3R_999737_999777,I_chr3R_1003608_1005580,noncoding_14652,F_chr3R_1006551_1006778,I_chr3R_1006714_1006778 chr3R - chr3R_1003608_1006778 chr3R_1003607_1003608;chr3R_1006778_1006779 chr3R_1003508_1003607;chr3R_1006779_1006837 4.11 4.11 1.52 12.12 0.00 7.14 4.35 5.26 4.94 4.35 2.04 4.32 0.00 3.39 4.62 5.06 5.00 2.08 5.48 11.11 3.51 5.85 2.94 1.94 1.00 0.00 1.82 5.56 10.68 4.55 2.90 10.87 6.36 3.57 4.00 1.67 2.60 4.48 4.20 6.02 4.84 5.11 3.85 4.76 8.77 3.03 1.41 6.34 6.38 4.12 1.40 4.00 0.00 0.00 2.78 0.00 0.00 2.74 K intron_retention mth chr3L - chr3L_343653_344106 chr3L_343652_343653;chr3L_344106_344107 chr3L_343440_343652;chr3L_344107_344301 1.65 3.70 0.00 3.23 0.00 12.50 1.54 3.23 5.97 0.00 9.09 1.75 0.00 0.00 3.23 8.51 0.00 NA 0.00 8.33 11.11 0.00 5.00 0.00 4.35 0.00 4.76 0.00 NA 0.00 0.00 0.00 0.00 3.92 0.00 7.14 0.00 0.00 3.70 5.17 0.00 2.27 11.76 5.13 NA 2.78 7.69 NA 6.45 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.38 4.17 K jcn_only_AA CG34449,RI_chrX_9232665_9233022,RI_chrX_9249209_9250033,RI_chrX_9249212_9250033,RI_chrX_9249212_9250244 chrX - chrX_9232467_9232545 chrX_9232482_9232545 chrX_9232546_9232664;chrX_9232324_9232466 66.06 56.67 71.93 69.39 67.92 55.71 58.62 60.94 63.30 76.79 55.74 68.09 76.00 63.27 66.10 71.79 64.58 67.74 61.67 67.80 50.00 71.29 60.67 69.89 67.74 73.58 58.24 75.51 64.91 69.23 55.10 55.17 63.20 62.03 64.15 74.55 65.81 77.33 62.64 66.06 66.67 65.87 54.29 65.12 69.77 71.43 71.43 81.25 61.63 70.00 67.61 60.42 65.38 63.89 70.67 68.42 55.36 70.18 K jcn_only_AA Nup358,I_chr3R_21078958_21079044 chr3R + chr3R_21078958_21079044 chr3R_21078958_21079013 chr3R_21078858_21078957;chr3R_21079045_21079144 100.00 100.00 100.00 100.00 100.00 100.00 99.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.25 100.00 99.09 100.00 100.00 98.53 100.00 98.88 100.00 98.51 98.48 100.00 96.30 98.85 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.98 96.49 100.00 100.00 100.00 99.36 100.00 100.00 98.25 100.00 96.30 100.00 97.50 96.88 100.00 K intron_retention foi,I_chr3L_8524905_8524976 chr3L + chr3L_8521898_8523659 chr3L_8521897_8521898;chr3L_8523659_8523660 chr3L_8521889_8521897;chr3L_8523660_8524249 33.33 NA 25.00 33.33 NA 15.38 32.00 35.00 30.77 NA 23.08 30.00 NA NA 25.00 44.44 41.67 22.22 37.50 20.51 28.57 47.62 NA 33.33 NA NA 41.67 NA 58.62 NA 24.00 NA NA 48.15 NA NA NA NA NA NA 60.00 28.00 NA NA NA NA NA 55.00 34.62 NA NA NA NA NA 41.67 NA NA 53.85 K intron_retention CG3415 chrX + chrX_16166262_16166557 chrX_16166261_16166262;chrX_16166557_16166558 chrX_16165474_16166261;chrX_16166558_16167858 1.61 2.16 2.08 3.28 1.15 2.41 5.75 0.87 2.17 3.03 0.00 2.05 4.84 8.47 1.82 0.00 0.00 5.19 1.47 2.66 2.35 0.62 0.99 1.04 1.65 0.00 4.55 1.38 0.00 0.00 4.62 2.86 0.00 4.58 0.00 0.89 1.31 0.00 2.17 4.29 0.00 3.14 0.00 1.31 1.74 1.57 0.00 3.39 3.45 1.31 1.61 4.95 1.75 1.44 2.13 1.54 0.98 0.00 K cassette Zn72D,RF_chr3L_16100887_16102721,I_chr3L_16105199_16105253 chr3L - chr3L_16104982_16105431 chr3L_16104982_16105097;chr3L_16105199_16105431 chr3L_16105098_16105198 chr3L_16103583_16104981;chr3L_16105432_16105487 92.00 96.43 94.12 83.64 95.24 96.77 76.79 98.21 86.42 88.24 84.62 88.14 96.55 92.11 91.67 97.92 95.00 81.82 88.89 88.00 82.61 97.44 92.98 93.75 70.00 62.96 96.43 96.55 80.00 100.00 89.66 90.00 100.00 87.10 95.24 86.67 90.20 91.18 90.00 97.87 86.67 91.07 96.30 96.30 100.00 100.00 96.77 100.00 91.80 96.55 90.38 90.00 92.00 94.74 82.05 100.00 91.67 96.43 K jcn_only_AA Rrp6,I_chr3R_10711208_10711300,I_chr3R_10711189_10711299 chr3R - chr3R_10711189_10711300 chr3R_10711208_10711300 chr3R_10711301_10711399;chr3R_10711108_10711188 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 2.13 0.00 0.00 4.69 0.00 0.00 2.38 2.38 4.00 0.00 1.82 2.86 2.00 0.00 0.00 1.56 0.00 0.00 2.78 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 1.69 0.00 K intron_retention asteroid,RI_chr2L_1082666_1082719 chr2L + chr2L_1078569_1078624 chr2L_1078568_1078569;chr2L_1078624_1078625 chr2L_1077981_1078568;chr2L_1078625_1079065 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Tsp42Ee,RI_chr2R_2904593_2904783 chr2R + chr2R_2904593_2904783 chr2R_2904593_2904751 chr2R_2904518_2904592;chr2R_2904784_2904880 99.86 99.86 99.87 100.00 99.85 100.00 100.00 99.91 100.00 99.73 99.71 99.93 99.85 99.86 99.87 99.92 100.00 99.87 100.00 99.70 99.86 99.77 99.90 99.89 100.00 100.00 99.86 99.41 100.00 99.82 99.75 99.49 99.37 99.71 99.08 100.00 99.91 99.86 99.88 98.94 99.82 99.93 100.00 99.88 99.58 99.86 99.87 99.78 99.72 99.68 99.86 99.84 100.00 99.79 99.88 99.86 100.00 99.88 K intron_retention pum,I_chr3R_4898752_4906279,I_chr3R_4989351_5039481 chr3R - chr3R_4898752_4905466 chr3R_4898751_4898752;chr3R_4905466_4905467 chr3R_4898652_4898751;chr3R_4905467_4905683 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 3.33 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG6678 chr3R + chr3R_17713277_17713756 chr3R_17713314_17713756 chr3R_17713757_17714276;chr3R_17712862_17713276 81.48 NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 81.48 NA NA NA NA NA NA NA NA NA NA 65.38 78.57 NA NA NA NA NA NA 73.81 85.00 NA NA NA NA NA NA NA NA 93.75 K intron_retention Pax,RI_chr2L_19404683_19426205,RI_chr2L_19404823_19409403,I_chr2L_19419985_19423267,I_chr2L_19419985_19423278,I_chr2L_19419985_19423414,I_chr2L_19420081_19423267,I_chr2L_19420081_19423278 chr2L - chr2L_19420192_19423414 chr2L_19420191_19420192;chr2L_19423414_19423415 chr2L_19420186_19420191;chr2L_19423415_19423487 69.62 NA NA 63.64 NA NA 90.00 NA 66.67 NA NA 46.15 NA NA NA 57.14 NA NA NA 70.59 NA 71.43 63.64 NA NA NA NA NA NA 61.54 NA NA NA 75.00 75.00 NA NA NA NA 66.67 NA NA NA 80.00 NA 70.00 NA 81.82 69.23 NA NA NA NA NA NA NA NA NA K intron_retention CG8417,I_chr3R_5585448_5585511 chr3R + chr3R_5585448_5585571 chr3R_5585447_5585448;chr3R_5585571_5585572 chr3R_5585348_5585447;chr3R_5585572_5585611 0.00 0.00 NA 0.00 NA NA 0.00 0.00 2.33 NA 0.00 6.90 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 7.69 0.00 15.00 NA NA 0.00 NA 0.00 0.00 5.56 0.00 0.00 NA 3.57 0.00 0.00 NA 0.00 0.00 NA 0.00 9.52 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 K intron_retention CG10732,I_chr3L_13438999_13439071 chr3L + chr3L_13438740_13438835 chr3L_13438739_13438740;chr3L_13438835_13438836 chr3L_13437468_13438739;chr3L_13438836_13438998 90.00 96.67 84.00 89.47 89.47 83.33 93.33 89.66 92.16 85.19 93.75 94.87 94.74 90.00 90.00 80.77 93.33 94.74 94.44 80.00 89.47 90.57 96.08 93.02 90.70 100.00 90.24 72.73 84.13 97.44 95.24 94.29 87.18 86.11 96.55 100.00 85.48 88.89 93.65 89.83 97.14 85.11 95.00 97.44 84.44 86.67 88.46 85.88 94.29 89.13 91.84 95.45 92.59 85.71 85.71 88.00 87.50 88.89 K jcn_only_AA Tif-IA chr2L + chr2L_22250315_22250432 chr2L_22250315_22250371 chr2L_22250120_22250314;chr2L_22250433_22250483 96.27 98.04 98.08 98.78 94.12 98.18 99.29 93.95 98.22 100.00 91.25 96.25 98.44 96.27 96.53 95.56 95.24 91.92 97.69 96.24 95.89 98.33 96.23 95.68 96.88 95.76 91.00 87.78 91.53 95.06 90.00 98.15 91.30 95.63 95.05 82.89 98.11 96.40 96.81 97.92 100.00 96.46 91.94 96.74 88.89 97.67 95.12 100.00 96.04 97.33 97.65 97.92 96.10 92.59 96.64 97.50 97.32 94.81 K jcn_only_AD CG5830,I_chr3L_15996923_15996998 chr3L - chr3L_15997175_15997669 chr3L_15997175_15997448 chr3L_15996999_15997174;chr3L_15997670_15997711 100.00 100.00 100.00 97.22 100.00 100.00 94.74 100.00 100.00 NA 100.00 96.49 97.96 100.00 97.96 98.65 95.35 100.00 98.00 98.04 100.00 95.35 100.00 NA 100.00 100.00 NA 100.00 96.43 100.00 100.00 92.59 95.16 100.00 97.92 100.00 NA NA 100.00 97.87 96.55 96.61 100.00 100.00 NA 100.00 96.55 96.72 97.85 100.00 100.00 NA NA NA 95.92 NA NA 98.18 K intron_retention eIF-4E,RI_chr3L_9394049_9394139,RI_chr3L_9394054_9394756,I_chr3L_9394308_9394756,RI_chr3L_9394468_9394631,I_chr3L_9394468_9394659,I_chr3L_9394468_9395155,I_chr3L_9394468_9395240,I_chr3L_9394468_9395446,I_chr3L_9394685_9394756,RI_chr3L_9394707_9395016,RI_chr3L_9394707_9395198,I_chr3L_9394707_9395309,I_chr3L_9394819_9394884,I_chr3L_9394819_9395016,I_chr3L_9394819_9395198,I_chr3L_9394819_9395379 chr3L - chr3L_9394054_9394139 chr3L_9394053_9394054;chr3L_9394139_9394140 chr3L_9393954_9394053;chr3L_9394140_9394239 0.56 1.05 0.00 1.06 0.00 0.00 0.00 1.01 1.27 0.00 0.00 1.37 1.48 0.00 1.66 0.71 0.80 0.60 0.00 1.11 0.00 1.49 0.00 0.93 0.00 2.30 1.20 2.34 1.10 0.00 0.00 0.00 1.06 1.99 0.00 0.00 0.93 1.28 0.50 0.98 1.22 0.56 0.00 0.00 1.43 0.00 0.56 1.72 0.99 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.68 K alternative_acceptor CG9396,CG16790,RI_chr3R_5395693_5395764,CG9399,I_chr3R_5403032_5403329 chr3R - chr3R_5395693_5395764 chr3R_5395713_5395764 chr3R_5395765_5395827;chr3R_5395636_5395692 76.19 NA NA NA NA NA NA NA NA NA 66.67 88.89 NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA 85.71 NA NA NA NA NA NA 66.67 NA NA NA 87.50 NA NA NA 88.89 NA K intron_retention CG34132 chr2L + chr2L_7885805_7885876 chr2L_7885804_7885805;chr2L_7885876_7885877 chr2L_7885488_7885804;chr2L_7885877_7886139 0.00 1.79 0.00 2.27 0.00 0.00 1.09 0.00 1.59 0.00 0.00 1.52 0.00 0.00 1.15 2.26 0.00 0.00 0.00 1.25 0.00 NA 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.94 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 1.64 3.12 0.00 3.03 0.00 0.00 1.00 0.00 0.00 0.00 K jcn_only_AA klett chrX - chrX_21497280_21497339 chrX_21497298_21497339 chrX_21497340_21497917;chrX_21497037_21497279 0.00 0.50 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.76 0.92 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.93 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 K alternative_donor MED1 chr3L - chr3L_21623014_21624037 chr3L_21623014_21624032 chr3L_21621425_21623013;chr3L_21624038_21625939 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 NA 96.15 100.00 90.91 100.00 100.00 NA 100.00 100.00 96.77 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 90.00 100.00 98.77 100.00 96.55 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.78 98.55 100.00 98.96 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_last_exon Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8107881_8110480 chr2L_8107881_8109296 chr2L_8110481_8116501 chr2L_8109297_8109458 chr2L_8107748_8107880 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 99.35 100.00 100.00 100.00 100.00 100.00 98.39 98.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.23 K intron_retention Ark,I_chr2R_12909344_12909416,RI_chr2R_12912984_12913058 chr2R + chr2R_12913186_12913249 chr2R_12913185_12913186;chr2R_12913249_12913250 chr2R_12913059_12913185;chr2R_12913250_12913949 0.00 0.00 0.00 0.00 2.78 0.00 0.00 5.08 3.16 0.00 0.00 0.00 10.00 0.00 0.00 0.00 6.12 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 4.62 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.02 0.00 0.00 0.00 0.00 0.00 0.00 5.66 0.00 1.82 0.00 0.00 0.00 0.00 0.00 3.77 4.76 K jcn_only_AA I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_927771_929704,CG32021,RI_chr4_928193_928245,I_chr4_928482_929704,noncoding_20815,I_chr4_929811_932812 chr4 - chr4_928482_929704;chr4_927771_929704 chr4_928551_929704 chr4_929705_929804;chr4_927741_927770 64.28 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 68.57 NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor RpL14 chr3L + chr3L_8594138_8594413 chr3L_8594238_8594413 chr3L_8594414_8594515;chr3L_8594108_8594137 2.65 3.23 1.72 1.41 1.61 2.06 3.09 1.95 2.30 2.67 0.74 3.55 1.35 2.00 1.81 6.15 1.67 1.77 2.26 3.91 1.80 2.65 10.61 5.19 5.88 2.21 16.67 8.16 6.52 1.23 15.71 2.01 1.01 1.69 1.54 5.45 6.25 8.16 5.26 1.28 2.94 1.11 1.06 4.11 2.50 4.76 7.59 2.86 2.12 6.10 11.11 6.76 1.27 15.00 1.13 8.33 3.62 1.70 N intron_retention Tpi chr3R - chr3R_25959817_25959887 chr3R_25959816_25959817;chr3R_25959887_25959888 chr3R_25959232_25959816;chr3R_25959888_25959972 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA endos,I_chr3L_14024099_14024488,I_chr3L_14024103_14024158,I_chr3L_14024103_14024546,noncoding_12505,I_chr3L_14024496_14024546 chr3L - chr3L_14024103_14024488 chr3L_14024158_14024488 chr3L_14024489_14024495;chr3L_14024003_14024102 3.59 3.31 3.40 7.08 3.85 3.68 6.18 4.88 2.11 4.65 3.50 13.71 2.94 0.72 3.65 3.59 3.90 1.94 3.83 3.70 2.55 7.08 3.15 4.00 4.05 9.52 0.54 2.56 2.99 3.12 3.05 7.47 7.45 3.21 0.94 12.73 3.91 3.09 1.44 3.66 6.38 2.66 2.90 4.03 7.17 7.11 1.68 8.93 2.11 3.27 0.85 3.12 2.04 5.71 4.40 2.90 2.65 7.19 K jcn_only_AD None chrU + chrU_1178980_1179256 chrU_1179201_1179256 96.83 98.04 96.79 94.29 99.44 96.86 97.25 97.60 95.49 98.39 94.55 95.91 97.26 96.46 97.96 96.50 97.23 98.12 96.90 95.76 97.93 95.00 92.57 95.91 93.40 94.03 97.73 96.08 97.63 97.44 96.62 92.50 97.17 98.25 96.83 98.35 97.39 95.61 97.37 97.55 96.05 95.60 95.79 97.04 92.91 95.11 97.74 99.19 96.74 91.53 100.00 93.08 95.05 91.40 96.23 97.18 98.13 98.12 K intron_retention CycD,I_chrX_15803256_15803313 chrX - chrX_15801625_15801686 chrX_15801624_15801625;chrX_15801686_15801687 chrX_15800855_15801624;chrX_15801687_15801824 2.70 3.45 6.00 4.05 3.92 5.88 2.60 4.44 0.91 4.88 4.26 5.88 4.55 0.00 5.00 2.41 2.56 3.77 7.27 3.81 2.22 11.63 4.71 0.00 0.00 3.39 5.33 15.38 14.29 2.13 0.00 0.00 1.72 4.40 2.56 0.00 3.17 6.82 2.63 5.41 2.94 0.95 0.00 0.00 8.33 0.00 0.00 0.00 6.25 2.56 2.22 2.13 2.13 0.00 0.00 0.00 2.70 3.57 K multi_cassette CG30118,I_chr2R_14320281_14325712,I_chr2R_14325118_14325712 chr2R - chr2R_14320281_14325712 chr2R_14320281_14325079;chr2R_14325118_14325444;chr2R_14325483_14325712 chr2R_14325080_14325117;chr2R_14325445_14325482 chr2R_14320181_14320280;chr2R_14325713_14325780 83.33 100.00 80.00 90.00 NA NA 55.56 100.00 85.71 NA NA 100.00 NA 80.00 80.00 87.50 NA 100.00 100.00 80.00 NA 62.50 80.00 83.33 NA NA 100.00 71.43 NA NA 70.00 80.00 85.71 100.00 NA NA 80.00 NA 83.33 87.50 NA 90.91 NA 50.00 80.00 90.00 80.00 90.00 78.57 75.00 83.33 NA NA 80.00 85.71 100.00 80.00 100.00 K intron_retention CG2691,noncoding_23539 chrX - chrX_13515390_13515451 chrX_13515389_13515390;chrX_13515451_13515452 chrX_13514957_13515389;chrX_13515452_13515586 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG9007,I_chr3L_13995402_13996269,I_chr3L_13995402_13996272,I_chr3L_13995402_13996296,I_chr3L_13995480_13996292,RI_chr3L_14010982_14011111 chr3L + chr3L_13995402_13996296;chr3L_13995402_13996292;chr3L_13995402_13996269 chr3L_13995402_13996272 chr3L_13995380_13995401;chr3L_13996297_13996360 2.56 NA 0.00 0.00 NA NA 3.23 2.38 2.94 NA NA 0.00 NA NA 4.76 2.08 NA NA 5.00 10.00 NA NA 5.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 8.00 NA NA NA NA NA NA 6.25 10.00 NA NA NA NA 0.00 2.56 NA NA NA NA NA 0.00 NA NA NA K alternative_acceptor CG7029 chr3R + chr3R_18614491_18615247 chr3R_18614491_18615214 chr3R_18614301_18614490;chr3R_18615248_18617722 78.95 72.73 80.56 92.86 95.00 66.67 74.19 75.00 88.64 86.67 82.61 76.60 75.00 78.95 82.61 85.00 78.95 85.00 85.71 80.70 95.45 75.38 71.74 72.73 85.71 90.91 85.19 86.36 73.81 87.80 80.00 65.22 91.49 80.85 84.00 82.93 70.00 76.00 74.47 66.10 75.00 84.44 78.95 61.11 65.62 78.12 66.67 78.18 88.24 86.36 68.42 80.00 65.52 84.62 76.67 73.68 52.17 74.36 K alternative_acceptor Lap1 chr2R + chr2R_10823524_10823631;chr2R_10823524_10823596 chr2R_10823524_10823599 chr2R_10823191_10823523;chr2R_10823632_10823803 14.29 0.00 12.50 10.53 NA 25.00 25.00 18.75 15.38 33.33 NA 20.00 0.00 0.00 0.00 15.38 NA 0.00 0.00 7.14 0.00 18.18 18.18 14.29 37.50 0.00 7.69 25.00 0.00 20.00 14.29 NA 8.33 12.50 33.33 18.18 14.29 28.57 18.18 11.11 NA 15.38 14.29 20.00 0.00 0.00 NA 6.67 21.43 NA 9.09 0.00 NA 20.00 0.00 NA NA 14.29 K intron_retention lolal,I_chr2R_14043671_14043736,I_chr2R_14043671_14043740,I_chr2R_14043671_14043901,RI_chr2R_14043671_14044082,I_chr2R_14043671_14044191,I_chr2R_14043671_14044461,I_chr2R_14043671_14045289,I_chr2R_14043671_14045344 chr2R - chr2R_14043671_14044260 chr2R_14043670_14043671;chr2R_14044260_14044261 chr2R_14043571_14043670;chr2R_14044261_14044291 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 90.91 100.00 NA NA 100.00 NA 100.00 NA NA NA 100.00 NA NA 100.00 90.00 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA 100.00 NA 100.00 NA NA NA 100.00 92.86 NA 100.00 NA NA NA NA NA NA NA N multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2816013;chr2R_2816342_2816577;chr2R_2816779_2817753 chr2R_2816014_2816341;chr2R_2816578_2816778 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA 100.00 NA NA 100.00 100.00 NA NA NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA 100.00 NA NA K jcn_only_AA CG6479 chr3L - chr3L_17331819_17331895 chr3L_17331837_17331895 chr3L_17331896_17332200;chr3L_17331559_17331818 100.00 95.00 100.00 98.25 97.30 100.00 100.00 92.73 96.30 100.00 94.12 96.43 100.00 100.00 100.00 100.00 95.24 100.00 NA 98.59 NA 94.12 100.00 93.85 100.00 100.00 98.67 100.00 100.00 98.04 NA 100.00 96.30 100.00 100.00 100.00 96.10 NA 98.98 98.31 100.00 97.22 100.00 97.06 100.00 100.00 95.74 100.00 100.00 100.00 95.95 95.45 100.00 94.87 96.77 95.83 100.00 100.00 K intron_retention UbcD6 chr3R - chr3R_776969_777762 chr3R_776968_776969;chr3R_777762_777763 chr3R_776833_776968;chr3R_777763_777831 100.00 100.00 92.86 91.67 NA 90.00 100.00 91.67 100.00 NA 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 93.33 NA 92.86 100.00 100.00 100.00 100.00 100.00 NA 100.00 93.75 100.00 100.00 100.00 NA 100.00 100.00 NA 96.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 NA NA 100.00 90.00 100.00 91.67 100.00 K alternative_donor Crk,RI_chr4_231302_233315,I_chr4_231307_232253 chr4 + chr4_230975_231063 chr4_230989_231063 chr4_231064_231112;chr4_230956_230974 95.72 87.50 NA 95.45 NA NA 96.00 100.00 96.77 NA NA 100.00 92.31 100.00 NA 87.50 100.00 NA 100.00 93.75 NA NA NA NA NA NA NA NA NA NA NA NA NA 93.33 NA NA 100.00 NA NA NA NA 93.75 NA 100.00 NA NA NA NA 93.75 88.89 NA 88.89 NA NA 100.00 NA NA NA K intron_retention CG33111,noncoding_18661,I_chr3R_19627964_19628107,I_chr3R_19633752_19633821 chr3R - chr3R_19627964_19631481 chr3R_19627963_19627964;chr3R_19631481_19631482 chr3R_19627864_19627963;chr3R_19631482_19631580 0.00 0.00 NA 14.29 NA NA NA NA 4.35 NA NA 0.00 NA NA NA NA NA 12.50 NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA 0.00 5.56 NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA 0.00 6.25 NA 0.00 0.00 0.00 13.33 NA NA NA 0.00 NA 0.00 0.00 K intron_retention wdb,I_chr3R_23394314_23406731,I_chr3R_23394314_23406794,I_chr3R_23394314_23407159,RI_chr3R_23394314_23407186,I_chr3R_23394314_23407412,I_chr3R_23394314_23407715,I_chr3R_23394314_23407721,RI_chr3R_23406048_23406731,RI_chr3R_23406048_23406794,I_chr3R_23406048_23406928,RI_chr3R_23406048_23407402 chr3R - chr3R_23394314_23405878 chr3R_23394313_23394314;chr3R_23405878_23405879 chr3R_23394214_23394313;chr3R_23405879_23406047 7.14 6.67 3.12 13.51 7.14 17.65 5.13 15.69 6.35 NA 20.00 9.52 NA 0.00 0.00 4.55 0.00 5.56 13.04 9.76 14.81 5.22 5.13 0.00 12.50 0.00 7.69 NA 16.28 0.00 0.00 NA 10.53 10.87 9.09 3.92 5.56 0.00 7.14 3.64 0.00 8.47 9.52 15.15 NA 8.33 0.00 7.69 3.70 16.67 7.69 0.00 NA NA 14.29 NA NA 11.76 K intron_retention CG15321,I_chrX_9578185_9579504,I_chrX_9578185_9579582,I_chrX_9578185_9580671,RI_chrX_9578185_9581011 chrX - chrX_9578185_9579535 chrX_9578184_9578185;chrX_9579535_9579536 chrX_9578085_9578184;chrX_9579536_9579571 6.46 NA NA NA NA NA NA 5.00 14.29 NA NA 23.81 NA 0.00 NA 15.79 NA NA 7.69 6.25 NA NA 6.67 NA NA NA NA 15.38 0.00 0.00 NA NA 0.00 15.38 NA NA NA NA NA 3.23 NA 15.00 NA 0.00 NA NA NA 1.96 12.50 NA 13.33 NA NA NA NA NA NA 0.00 K intron_retention lic,CG2200 chrX + chrX_12986255_12986316 chrX_12986254_12986255;chrX_12986316_12986317 chrX_12986122_12986254;chrX_12986317_12986519 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.99 0.00 3.68 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.36 0.38 0.69 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 K jcn_only_AA Rab39 chrX + chrX_7629369_7629812 chrX_7629369_7629796 chrX_7628958_7629368;chrX_7629813_7630512 100.00 100.00 96.97 100.00 100.00 100.00 97.96 98.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 95.65 100.00 100.00 NA 100.00 100.00 97.22 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 NA 98.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 K alternative_donor pelo,I_chr2L_9707821_9708144,I_chr2L_9707891_9708144,I_chr2L_9708081_9708144 chr2L + chr2L_9708081_9708144;chr2L_9706747_9708144;chr2L_9707821_9708144 chr2L_9707891_9708144 chr2L_9708145_9708244;chr2L_9706647_9706746 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention l(3)L1231,RI_chr3R_10475091_10481172 chr3R - chr3R_10475091_10481181 chr3R_10475090_10475091;chr3R_10481181_10481182 chr3R_10474991_10475090;chr3R_10481182_10481272 0.00 NA 0.00 6.25 0.00 0.00 0.00 4.35 0.00 7.14 0.00 5.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 8.00 NA NA NA 9.09 NA 0.00 NA 15.79 0.00 NA 6.45 0.00 NA NA 0.00 NA 0.00 10.00 NA 5.13 0.00 NA NA NA NA 5.88 2.94 NA 6.67 0.00 NA NA 0.00 NA NA NA K jcn_only_AA CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2815657_2816013;chr2R_2815654_2816013 chr2R_2815768_2816013 chr2R_2816014_2816113;chr2R_2815599_2815653 24.59 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 29.17 NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor alpha-Man-I,I_chrX_10218352_10219759,I_chrX_10218390_10219759 chrX - chrX_10218390_10219816;chrX_10218390_10219708;chrX_10218390_10219846;chrX_10218390_10219759 chrX_10218390_10219823 chrX_10218290_10218389;chrX_10219847_10219859 25.00 20.00 NA 33.33 NA 14.29 16.67 33.33 38.46 NA 16.67 26.67 22.22 28.57 33.33 25.00 16.67 14.29 33.33 30.00 NA 40.00 40.00 16.67 NA 28.57 0.00 NA NA 16.67 50.00 NA 0.00 27.27 20.00 25.00 NA NA 33.33 50.00 NA 22.22 14.29 NA NA 33.33 NA 20.00 23.08 NA 16.67 40.00 40.00 NA 22.22 NA 25.00 33.33 K intron_retention CG9153,Myo61F chr3L + chr3L_1314321_1314472 chr3L_1314320_1314321;chr3L_1314472_1314473 chr3L_1314158_1314320;chr3L_1314473_1314709 37.21 27.59 31.94 38.81 33.33 33.33 52.33 39.76 38.46 43.75 37.78 40.00 37.50 39.29 40.00 32.65 31.82 40.82 39.68 35.09 38.46 61.90 21.70 25.33 32.56 40.48 29.17 37.50 43.75 27.14 31.63 48.00 33.33 35.42 41.18 61.54 30.89 33.33 37.21 47.01 42.31 34.65 50.00 31.08 31.03 38.78 27.91 45.10 37.17 26.87 40.85 34.00 26.53 42.42 40.30 28.21 36.00 28.07 K intron_retention Nak chr2L - chr2L_18962834_18962884 chr2L_18962833_18962834;chr2L_18962884_18962885 chr2L_18962646_18962833;chr2L_18962885_18963115 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA 93.33 100.00 NA NA NA 100.00 92.31 NA 100.00 NA 100.00 NA NA NA NA 100.00 100.00 100.00 NA NA NA 91.67 100.00 NA NA K cassette Bsg25D chr2L - chr2L_5275781_5276511 chr2L_5275781_5276287;chr2L_5276369_5276511 chr2L_5276288_5276368 chr2L_5274019_5275780;chr2L_5276512_5276731 2.08 2.86 0.00 0.00 4.76 0.00 3.23 2.78 1.43 0.00 0.00 2.38 0.00 0.00 0.00 4.55 6.25 5.00 0.00 2.33 0.00 2.33 1.89 0.00 6.67 5.56 2.17 2.70 7.69 0.00 0.00 0.00 3.85 2.17 0.00 3.57 3.64 3.57 2.00 0.00 0.00 1.82 0.00 2.70 0.00 0.00 3.12 4.00 2.38 3.23 2.63 0.00 NA 5.26 0.00 0.00 0.00 3.45 K intron_retention CG15012 chr3L - chr3L_4292010_4292069 chr3L_4292009_4292010;chr3L_4292069_4292070 chr3L_4291899_4292009;chr3L_4292070_4292320 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 1.98 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.76 0.49 0.00 0.24 0.29 0.00 0.53 0.43 0.39 0.99 0.00 0.91 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 K cassette Stlk chr2R + chr2R_448295_450349 chr2R_448295_448459;chr2R_448565_450349 chr2R_448460_448564 chr2R_448219_448294;chr2R_450350_450581 6.25 NA 6.67 4.76 NA 5.88 6.45 6.25 5.88 NA 11.76 9.68 20.00 6.25 6.25 4.76 0.00 NA 6.45 5.26 0.00 NA 4.76 NA NA NA NA NA NA NA 22.22 NA NA 8.57 NA NA NA NA NA 11.76 NA 3.85 16.67 4.35 NA NA NA NA 12.12 NA 6.25 NA NA NA 4.76 NA 6.25 NA K intron_retention C3G chrX - chrX_6680846_6681128 chrX_6680845_6680846;chrX_6681128_6681129 chrX_6680189_6680845;chrX_6681129_6681281 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.00 3.49 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Dscam,I_chr2R_3212234_3216793,F_chr2R_3219886_3228832,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3214290_3216793 chr2R_3214289_3214290;chr2R_3216793_3216794 chr2R_3214229_3214289;chr2R_3216794_3216856 2.66 6.67 16.00 0.00 NA 4.88 23.53 0.00 9.76 NA NA 4.76 4.35 5.26 10.00 7.41 NA NA 4.76 3.85 11.11 2.94 2.22 0.00 0.00 0.00 5.26 9.09 4.65 4.17 0.00 0.00 4.00 4.55 0.00 11.76 4.65 8.33 1.85 1.75 0.00 4.08 0.00 0.00 0.00 2.38 0.00 1.64 5.77 0.00 2.04 0.00 0.00 0.00 0.00 0.00 4.35 0.00 K intron_retention cals,I_chr4_1139644_1142084,RI_chr4_1141233_1142084 chr4 - chr4_1136521_1136581 chr4_1136520_1136521;chr4_1136581_1136582 chr4_1135886_1136520;chr4_1136582_1136705 0.00 8.70 0.00 7.69 NA 0.00 15.79 3.51 7.14 NA NA 9.52 0.00 6.67 NA 3.28 5.56 7.14 7.14 5.13 NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 0.00 0.00 8.93 0.00 NA NA NA NA 0.00 NA 13.95 0.00 0.00 NA 0.00 0.00 0.00 5.36 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 K intron_retention Lsd-1,CG10375 chr3R + chr3R_19592030_19592095 chr3R_19592029_19592030;chr3R_19592095_19592096 chr3R_19591852_19592029;chr3R_19592096_19592453 19.88 NA NA NA NA NA NA NA NA NA NA NA NA NA 23.08 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA 28.57 NA NA NA 7.14 NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention RI_chrX_11473566_11473702,roX2,noncoding_23149,I_chrX_11475074_11475402 chrX + chrX_11473433_11473702 chrX_11473432_11473433;chrX_11473702_11473703 chrX_11473419_11473432;chrX_11473703_11473726 58.33 NA NA NA NA NA 63.64 75.00 64.71 NA NA 58.33 NA NA NA 50.00 NA NA 50.00 50.00 NA NA NA NA NA NA NA NA NA NA 57.14 NA NA 63.16 NA NA NA NA NA 64.29 NA 42.86 54.55 NA NA 45.45 NA NA 68.75 NA NA NA NA NA 62.50 NA NA NA K alternative_donor I_chrX_15680663_15680821,Rhp chrX + chrX_15682991_15684279 chrX_15683146_15684279 chrX_15684280_15684421;chrX_15682909_15682990 55.56 NA NA NA NA NA 55.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG2926,I_chr3R_1410401_1410501,I_chr3R_1410558_1410893,I_chr3R_1410841_1410893 chr3R - chr3R_1410401_1410893 chr3R_1410558_1410893 chr3R_1410894_1410993;chr3R_1410301_1410400 0.00 0.00 0.00 4.35 0.00 0.00 2.38 0.00 1.25 7.14 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 NA 1.33 1.39 NA 0.00 3.85 0.00 NA 0.00 0.00 NA 0.00 K intron_retention Mlf,noncoding_7111,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CE_chr2R_11826384_11826741,I_chr2R_11826763_11826990,CEI_chr2R_11826763_11827279 chr2R - chr2R_11824089_11824525 chr2R_11824088_11824089;chr2R_11824525_11824526 chr2R_11823989_11824088;chr2R_11824526_11824611 86.67 85.37 90.00 83.72 86.67 90.91 100.00 84.38 89.02 81.82 88.89 97.80 95.83 92.31 85.71 92.86 92.00 95.24 95.45 82.08 78.95 97.67 79.45 78.57 94.87 85.71 94.87 91.67 97.44 86.49 84.00 82.93 90.00 90.91 88.00 78.18 75.32 86.05 89.53 86.11 88.89 88.68 85.00 82.69 93.06 83.67 82.05 79.17 88.00 88.10 83.67 92.59 72.97 83.33 87.88 81.58 79.63 77.50 K alternative_donor CG3774,I_chrX_6114220_6114292 chrX + chrX_6114220_6115412 chrX_6114451_6115412 chrX_6115413_6116709;chrX_6114120_6114219 96.88 88.89 87.50 97.50 100.00 95.00 92.59 97.44 97.62 90.00 93.75 100.00 93.33 100.00 95.83 96.77 100.00 100.00 96.00 95.83 94.74 100.00 96.00 95.00 100.00 95.83 100.00 92.31 100.00 94.12 95.83 93.33 100.00 96.88 100.00 100.00 100.00 93.33 100.00 100.00 88.00 97.37 100.00 100.00 94.44 95.65 94.44 96.30 97.44 91.67 100.00 100.00 100.00 100.00 100.00 93.75 100.00 85.71 K intron_retention CG9065 chrX - chrX_14978596_14978658 chrX_14978595_14978596;chrX_14978658_14978659 chrX_14978386_14978595;chrX_14978659_14978664 0.00 0.00 0.00 3.12 0.00 0.00 2.74 0.00 4.62 0.00 0.00 1.06 3.33 4.00 3.03 4.65 5.26 0.00 1.56 1.80 0.00 0.00 0.00 5.41 0.00 6.45 0.00 0.00 14.75 0.00 0.00 1.67 2.22 2.44 0.00 0.00 0.00 2.86 0.00 0.00 5.77 1.83 0.00 0.00 0.00 0.00 0.00 0.00 1.68 0.00 6.06 2.17 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG12054 chr3R + chr3R_27046565_27051534 chr3R_27046565_27046634;chr3R_27047188_27051534 chr3R_27046635_27047187 chr3R_27046436_27046564;chr3R_27051535_27051798 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 97.06 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 98.90 100.00 97.67 98.28 100.00 95.45 97.50 95.45 95.83 100.00 97.06 100.00 100.00 100.00 100.00 100.00 97.44 98.25 100.00 98.25 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.82 100.00 98.18 100.00 100.00 100.00 97.96 100.00 100.00 100.00 K jcn_only_AA CG5794,I_chr3R_20475643_20475715 chr3R - chr3R_20462920_20463019 chr3R_20462947_20463019 chr3R_20463020_20463357;chr3R_20462180_20462919 35.03 33.33 20.83 22.95 46.15 24.00 39.02 35.19 43.48 40.00 37.50 34.62 28.12 17.24 54.17 26.67 48.57 41.94 42.31 30.99 26.67 47.62 39.53 NA 41.67 21.95 27.03 NA 28.12 47.62 25.71 NA 34.88 37.50 NA 40.00 33.33 NA 37.14 40.00 NA 27.78 48.28 31.03 38.46 34.29 38.46 32.00 40.00 33.33 22.86 54.55 30.77 NA 34.21 31.82 46.15 42.11 K intron_retention Xe7,RI_chr3R_1493064_1493414,CRI_chr3R_1493111_1493414 chr3R - chr3R_1493111_1493414 chr3R_1493110_1493111;chr3R_1493414_1493415 chr3R_1493105_1493110;chr3R_1493415_1493514 70.00 NA NA 60.87 NA NA 66.67 83.33 76.47 NA NA 91.67 70.00 NA NA 41.67 NA NA NA 69.23 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA 73.33 NA 78.57 NA NA NA NA NA 30.77 88.89 NA NA NA NA NA NA NA NA NA K jcn_only_AD Cg25C,I_chr2L_5029811_5029873 chr2L + chr2L_5029811_5030136;chr2L_5029637_5030136 chr2L_5029747_5030136 chr2L_5030137_5030237;chr2L_5029620_5029636 11.80 5.26 9.84 16.67 6.52 4.88 20.90 8.33 13.19 12.50 5.71 7.94 14.43 11.76 8.86 9.88 2.33 9.38 11.84 10.32 3.09 12.82 17.72 8.33 26.92 16.13 16.67 14.71 27.59 NA 6.15 9.09 10.91 9.09 5.26 28.57 25.71 19.57 10.42 16.47 14.89 10.67 3.77 21.79 13.33 16.88 4.76 13.43 10.73 26.32 5.80 37.50 9.64 13.64 1.98 12.82 19.15 15.38 K intron_retention CG2147,Trxr-1 chrX + chrX_8134918_8134971 chrX_8134917_8134918;chrX_8134971_8134972 chrX_8134707_8134917;chrX_8134972_8135520 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 4.17 0.00 12.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3L_12398261_12403200,Gap69C chr3L - chr3L_12409105_12409374 chr3L_12409104_12409105;chr3L_12409374_12409375 chr3L_12409045_12409104;chr3L_12409375_12409579 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Sap-r,E_chr3R_26711286_26714646,I_chr3R_26712627_26714606,RI_chr3R_26713323_26714382 chr3R - chr3R_26714462_26714606 chr3R_26714461_26714462;chr3R_26714606_26714607 chr3R_26714398_26714461;chr3R_26714607_26714706 1.85 1.50 1.42 1.66 1.85 1.43 1.83 1.68 1.92 2.23 1.24 1.73 1.21 2.10 1.49 1.36 2.31 1.41 1.98 1.78 2.29 1.85 1.76 2.50 3.21 1.91 2.09 1.71 2.11 2.29 3.44 2.00 1.08 1.69 1.92 1.06 3.07 2.64 1.91 2.15 0.82 2.22 1.32 1.96 1.33 1.49 2.30 1.83 1.75 2.91 1.97 3.06 0.78 1.90 1.69 2.58 1.39 0.50 K intron_retention Nup153,I_chrX_16495232_16495296 chrX + chrX_16493673_16493756 chrX_16493672_16493673;chrX_16493756_16493757 chrX_16493283_16493672;chrX_16493757_16494346 24.38 21.43 26.32 32.08 27.59 0.00 25.00 28.30 22.97 5.56 8.33 20.31 24.24 25.00 28.57 23.53 26.92 35.71 21.05 15.38 16.00 16.67 20.00 20.83 35.29 25.00 46.43 26.32 45.71 10.53 32.35 23.08 14.29 24.53 21.43 46.15 17.24 26.32 14.29 14.00 42.86 24.07 25.00 29.41 12.50 16.67 NA 25.00 19.67 30.77 25.00 30.00 NA NA 29.17 NA NA 15.38 K intron_retention Nc73EF,F_chr3L_16952838_16955936,CE_chr3L_16952842_16955936,I_chr3L_16952985_16955434,I_chr3L_16953768_16954599 chr3L + chr3L_16952985_16954599 chr3L_16952984_16952985;chr3L_16954599_16954600 chr3L_16952885_16952984;chr3L_16954600_16954699 4.35 2.22 10.34 9.09 4.35 5.88 12.24 7.55 11.76 4.35 12.24 2.06 6.06 0.00 8.16 13.79 0.00 0.00 9.09 4.62 8.70 0.00 5.33 0.00 3.92 2.70 3.90 6.00 0.00 0.00 6.45 0.00 2.70 10.87 3.57 4.44 2.70 2.90 3.90 6.67 4.35 4.48 11.54 8.96 0.00 3.03 4.65 7.14 6.35 4.35 4.88 2.70 0.00 3.70 7.32 4.17 6.25 0.00 K intron_retention mld chr3R + chr3R_20445827_20445891 chr3R_20445826_20445827;chr3R_20445891_20445892 chr3R_20441773_20445826;chr3R_20445892_20445957 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 5.71 0.00 0.00 NA 0.00 0.00 0.00 2.78 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA N cassette CaMKII,RI_chr4_1067398_1067889,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,RI_chr4_1071489_1071968,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1065875_1068078 chr4_1065875_1067889;chr4_1068017_1068078 chr4_1067890_1068016 chr4_1065782_1065874;chr4_1068079_1068201 100.00 100.00 100.00 77.78 100.00 100.00 89.61 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Syx4,I_chrX_2635555_2635621,I_chrX_2636831_2636971 chrX - chrX_2633266_2633329 chrX_2633265_2633266;chrX_2633329_2633330 chrX_2633238_2633265;chrX_2633330_2633569 26.83 23.26 31.71 17.65 24.14 21.43 48.48 34.00 26.56 21.43 40.00 28.85 36.36 17.14 32.65 26.83 28.00 40.00 28.21 32.73 34.38 35.29 27.91 24.56 38.71 58.82 34.21 36.84 50.00 18.52 22.73 40.00 17.24 31.25 19.57 57.14 18.97 18.18 28.00 10.00 34.88 33.77 27.27 16.67 19.57 28.92 15.38 24.39 23.33 18.84 22.37 16.28 10.71 23.08 26.92 16.22 12.50 19.23 K alternative_donor CG5537,I_chr3L_5804425_5804485 chr3L + chr3L_5805019_5805164 chr3L_5805080_5805164 chr3L_5805165_5805330;chr3L_5804976_5805018 92.68 96.23 92.31 93.33 100.00 94.44 92.31 93.15 92.39 89.47 97.50 86.90 90.70 100.00 94.23 91.53 86.49 97.92 95.92 92.86 95.24 70.37 91.80 95.71 95.24 92.59 93.22 92.68 95.65 86.00 98.31 91.11 84.75 89.55 90.00 96.00 98.39 97.50 88.16 89.23 84.00 88.31 92.31 100.00 83.82 94.12 93.94 93.75 95.12 88.89 90.41 97.44 90.57 90.67 92.00 95.77 93.48 88.46 K cassette l(1)G0232,I_chrX_9538401_9552678,I_chrX_9538401_9552777 chrX - chrX_9538401_9552879 chrX_9538401_9552033;chrX_9552200_9552879 chrX_9552034_9552199 chrX_9538301_9538400;chrX_9552880_9552947 0.00 NA 0.00 2.27 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 3.23 1.67 0.00 NA NA NA NA 3.23 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 2.70 NA NA NA NA NA 2.78 NA NA NA K intron_retention CG6607,ana1 chr3R + chr3R_20354651_20354703 chr3R_20354650_20354651;chr3R_20354703_20354704 chr3R_20354471_20354650;chr3R_20354704_20355225 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 1.19 4.17 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.98 0.00 1.15 0.00 0.95 0.00 2.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CtBP chr3R + chr3R_8850752_8851110 chr3R_8850751_8850752;chr3R_8851110_8851111 chr3R_8850711_8850751;chr3R_8851111_8851987 72.73 NA NA 90.00 NA NA NA NA 64.29 NA NA 65.00 NA NA NA NA NA NA NA 76.92 NA 71.43 NA 72.73 77.78 NA NA 85.71 53.85 75.00 NA NA 50.00 NA NA NA 88.89 NA 83.33 83.33 NA 80.00 NA 69.23 NA NA NA NA 70.00 46.15 NA NA NA 63.64 NA NA NA NA K jcn_only_AD I_chr4_335584_340074,CG32850,I_chr4_338996_340074,RI_chr4_340294_340597 chr4 + chr4_335584_337018 chr4_335806_337018 chr4_337019_337135;chr4_335522_335583 59.98 NA NA NA NA NA NA 51.85 NA NA NA 60.87 NA NA NA 76.19 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA 59.09 NA NA NA NA NA NA 45.00 NA NA NA NA NA NA NA NA NA K intron_retention GlcAT-P,I_chr3L_11172482_11172633 chr3L - chr3L_11172482_11172633 chr3L_11172481_11172482;chr3L_11172633_11172634 chr3L_11172382_11172481;chr3L_11172634_11172733 91.29 83.33 77.78 100.00 90.00 NA 86.67 NA 100.00 NA NA 100.00 100.00 100.00 94.44 NA NA NA NA 94.12 NA 93.75 88.89 88.89 100.00 90.91 96.00 90.91 100.00 83.33 66.67 NA 88.89 100.00 NA NA 93.75 NA 91.67 83.33 100.00 94.74 88.89 NA NA NA NA 93.75 88.24 NA 90.00 NA 87.50 NA 90.91 NA 92.31 88.89 K intron_retention Lap1 chr2R + chr2R_10823996_10824051 chr2R_10823995_10823996;chr2R_10824051_10824052 chr2R_10823860_10823995;chr2R_10824052_10824341 2.27 5.00 0.00 9.09 0.00 NA 0.00 0.00 8.51 NA 0.00 5.88 4.76 0.00 NA 7.41 0.00 0.00 5.56 7.14 NA 3.23 2.27 6.67 5.00 0.00 7.69 0.00 7.14 0.00 15.79 0.00 8.33 0.00 0.00 19.05 0.00 0.00 0.00 5.00 NA 0.00 0.00 4.17 NA NA NA 0.00 5.71 NA 6.25 11.11 NA NA 0.00 NA NA NA K jcn_only_AA CG15881,RI_chr3L_19799338_19799394,RI_chr3L_19799338_19799408,Kap-alpha1 chr3L + chr3L_19799338_19799405 chr3L_19799338_19799394 chr3L_19799238_19799337;chr3L_19799406_19799494 4.65 3.23 4.55 8.33 NA NA 11.54 0.00 10.17 NA 0.00 2.44 NA NA NA 7.69 NA 7.14 4.17 2.04 12.00 13.51 NA 3.12 NA NA 16.13 NA NA 4.17 10.00 12.00 2.22 3.12 5.00 NA 5.88 4.76 6.45 5.80 NA 2.94 NA 5.56 7.69 3.85 4.17 0.00 4.76 8.70 5.56 3.70 0.00 2.56 0.00 8.33 2.82 2.13 K jcn_only_AA pita,Rrp4 chr2R - chr2R_19437411_19437470 chr2R_19437415_19437470 chr2R_19437471_19438559;chr2R_19436488_19437410 100.00 100.00 100.00 99.08 100.00 100.00 98.53 97.35 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.83 98.70 100.00 100.00 100.00 100.00 98.97 100.00 98.89 98.91 98.59 100.00 100.00 100.00 100.00 100.00 98.18 97.26 100.00 100.00 98.41 99.08 99.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.99 99.12 99.34 96.84 98.59 100.00 100.00 100.00 97.27 98.11 99.33 K intron_retention Grip84 chrX - chrX_19455829_19456724 chrX_19455828_19455829;chrX_19456724_19456725 chrX_19455530_19455828;chrX_19456725_19457046 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention fw chrX - chrX_11889905_11889968 chrX_11889904_11889905;chrX_11889968_11889969 chrX_11889688_11889904;chrX_11889969_11890247 44.70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 22.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA 29.41 NA NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA K intron_retention hkl chr2L + chr2L_19047655_19047715 chr2L_19047654_19047655;chr2L_19047715_19047716 chr2L_19047420_19047654;chr2L_19047716_19047825 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.80 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 K intron_retention CG7609,I_chr3R_25574492_25574541 chr3R - chr3R_25570546_25570603 chr3R_25570545_25570546;chr3R_25570603_25570604 chr3R_25569906_25570545;chr3R_25570604_25570796 0.00 0.00 0.00 5.56 0.00 0.00 0.00 3.12 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 2.44 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20346714_20347206 chr3L_20346738_20347206 chr3L_20347207_20347505;chr3L_20346638_20346713 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K multi_cassette CG14995,I_chr3L_4095875_4097205,I_chr3L_4096047_4096903 chr3L - chr3L_4095875_4097506 chr3L_4095875_4095971;chr3L_4096068_4096903;chr3L_4096979_4097205;chr3L_4097335_4097506 chr3L_4095972_4096067;chr3L_4096904_4096978;chr3L_4097206_4097334 chr3L_4095775_4095874;chr3L_4097507_4097804 100.00 100.00 100.00 100.00 66.67 NA NA 100.00 100.00 80.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 90.91 100.00 93.75 80.00 87.50 75.00 100.00 87.50 83.33 100.00 100.00 83.33 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 87.50 NA 90.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 85.71 100.00 K alternative_donor CG4589,I_chr2R_20402394_20402462,I_chr2R_20402394_20402706 chr2R - chr2R_20402394_20402753;chr2R_20402394_20402785 chr2R_20402394_20402809 chr2R_20402294_20402393;chr2R_20402810_20402813 7.14 NA 10.00 11.11 NA 0.00 8.33 0.00 7.69 NA 0.00 0.00 0.00 0.00 12.50 7.14 20.00 20.00 11.11 7.69 0.00 NA NA NA NA 0.00 NA NA 20.00 NA 0.00 NA 0.00 0.00 NA NA NA NA NA 20.00 NA 8.33 14.29 NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA 14.29 NA NA 16.67 K alternative_donor ben chrX + chrX_13890789_13892127;chrX_13890791_13892127;chrX_13891016_13892127;chrX_13890793_13892127;chrX_13890762_13892127;chrX_13890795_13892127;chrX_13890831_13892127;chrX_13890768_13892127;chrX_13890648_13892127 chrX_13890990_13892127 chrX_13892128_13892800;chrX_13890644_13890647 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 0.00 K intron_retention Hcs,I_chr3R_1303481_1304607 chr3R + chr3R_1301124_1301184 chr3R_1301123_1301124;chr3R_1301184_1301185 chr3R_1300689_1301123;chr3R_1301185_1301522 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 3.03 0.00 NA 3.23 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA K alternative_donor Treh,I_chr2R_16972565_16972702,I_chr2R_16975359_16975442,RI_chr2R_16975359_16975842,I_chr2R_16975364_16975842 chr2R + chr2R_16974443_16975285 chr2R_16974918_16975285 chr2R_16975286_16975358;chr2R_16974405_16974442 76.79 73.47 68.18 79.59 85.71 65.79 86.67 88.10 81.13 87.76 82.76 79.07 92.00 87.18 86.00 82.69 89.19 75.68 74.36 77.94 79.41 76.81 75.71 73.13 80.56 86.67 76.79 93.75 81.82 58.82 81.25 63.83 70.37 75.00 78.05 80.00 67.09 70.18 67.65 71.60 66.15 77.66 83.33 75.36 67.53 63.10 66.67 67.14 78.41 93.10 69.86 81.08 68.75 69.09 74.07 58.21 63.49 54.08 K alternative_donor CG3558,RI_chr2L_2995071_2997790 chr2L + chr2L_2993464_2993544;chr2L_2993444_2993544;chr2L_2993378_2993544 chr2L_2993410_2993544 chr2L_2993545_2994408;chr2L_2993028_2993377 2.25 2.33 5.77 2.44 8.57 2.44 1.00 1.85 3.36 0.00 4.76 1.19 1.89 3.64 6.12 1.10 2.17 2.56 3.23 1.98 5.56 1.49 4.00 0.00 0.00 0.00 5.41 0.00 7.89 1.43 0.00 2.00 1.16 1.83 0.00 2.38 2.86 3.12 0.00 1.01 1.64 3.09 5.13 6.15 2.50 2.53 0.00 0.76 1.94 0.00 6.98 3.03 7.14 NA 6.78 0.00 4.00 0.83 K intron_retention I_chr2R_6778098_6778140,CG12942 chr2R + chr2R_6783004_6783056 chr2R_6783003_6783004;chr2R_6783056_6783057 chr2R_6782698_6783003;chr2R_6783057_6783189 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 8.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K alternative_donor CG4239,I_chrX_16279725_16280317 chrX + chrX_16279721_16281003;chrX_16279725_16281003 chrX_16279372_16281003 chrX_16281004_16281322;chrX_16279353_16279371 93.62 91.67 100.00 95.56 88.89 91.67 89.66 95.56 90.00 NA 60.00 95.74 91.67 100.00 89.47 92.31 100.00 92.31 95.24 90.24 66.67 100.00 95.00 96.67 95.45 89.47 95.65 95.65 93.33 84.62 81.82 92.86 84.62 95.35 95.24 94.44 90.62 96.88 93.18 96.61 NA 93.48 92.86 90.91 NA 95.24 100.00 81.82 95.77 100.00 93.75 100.00 94.12 92.31 94.74 96.15 90.00 75.00 K intron_retention CG3077 chr2L - chr2L_2764442_2764504 chr2L_2764441_2764442;chr2L_2764504_2764505 chr2L_2764373_2764441;chr2L_2764505_2764573 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG11006,F_chr3L_12799159_12799339 chr3L + chr3L_12799438_12799952;chr3L_12799438_12799955;chr3L_12799438_12800078;chr3L_12799438_12799967 chr3L_12799438_12800192 chr3L_12799340_12799437;chr3L_12800193_12800930 97.73 NA NA 96.15 NA 100.00 NA 96.67 97.78 100.00 NA 100.00 NA NA NA NA NA NA NA 97.73 NA 85.19 95.00 96.67 100.00 NA NA 94.74 96.08 92.59 NA NA 97.53 NA 100.00 100.00 95.83 100.00 94.44 97.01 100.00 100.00 NA 96.00 95.35 91.67 NA 98.72 97.14 100.00 100.00 NA 100.00 NA NA 100.00 NA 97.73 K intron_retention m-cup chr3R - chr3R_12971778_12971841 chr3R_12971777_12971778;chr3R_12971841_12971842 chr3R_12971649_12971777;chr3R_12971842_12972385 0.00 0.00 7.69 0.00 0.00 0.00 8.70 0.00 9.76 NA NA 3.70 0.00 0.00 0.00 5.26 0.00 0.00 0.00 6.82 0.00 4.35 6.45 0.00 0.00 0.00 14.29 NA 11.76 0.00 27.27 10.00 NA 14.29 NA 0.00 0.00 0.00 3.12 10.81 4.76 5.26 NA 16.67 NA 0.00 8.70 0.00 5.71 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K alternative_donor Arf102F,RI_chr4_1144958_1145393,I_chr4_1152220_1152710,I_chr4_1152585_1152687 chr4 + chr4_1145520_1145575 chr4_1145524_1145575 chr4_1145576_1145637;chr4_1145453_1145519 0.00 0.00 0.00 0.51 0.00 0.00 1.25 0.00 0.00 0.00 0.00 1.56 0.00 1.01 0.00 0.00 0.00 0.00 0.95 1.11 0.00 0.00 0.00 0.00 3.03 2.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 2.00 0.00 0.00 6.52 0.97 1.02 0.00 0.00 0.98 0.00 0.00 0.84 0.00 0.00 0.00 0.00 0.00 0.00 1.41 1.03 0.83 K intron_retention itp chr2R + chr2R_20445223_20445552 chr2R_20445222_20445223;chr2R_20445552_20445553 chr2R_20444605_20445222;chr2R_20445553_20446461 0.00 0.00 0.00 2.44 0.00 0.00 3.45 3.85 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG7203,LKR,I_chr2L_7795654_7795717 chr2L - chr2L_7795654_7795774 chr2L_7795654_7795717 chr2L_7795554_7795653;chr2L_7795775_7795817 0.52 0.00 0.27 0.52 0.38 0.33 1.53 0.65 0.49 0.88 0.43 0.82 0.00 0.34 0.47 0.55 0.79 0.00 0.30 0.45 0.62 0.36 0.60 0.52 0.35 0.29 0.47 0.73 0.53 0.83 1.86 0.73 0.90 0.64 0.79 0.00 0.49 0.91 0.18 0.27 0.00 0.74 0.73 0.77 0.51 0.80 0.00 0.00 0.55 1.26 0.38 0.62 0.00 0.94 0.55 0.50 0.49 0.85 K alternative_donor E(Pc) chr2R + chr2R_7339889_7340897;chr2R_7339818_7340897 chr2R_7339807_7340897 chr2R_7340898_7340908;chr2R_7339722_7339806 14.29 NA NA 16.67 NA NA 11.11 44.44 28.57 11.11 NA 14.29 NA NA NA 37.50 NA NA NA 16.67 NA 12.50 25.00 12.50 NA NA NA 33.33 7.69 14.29 NA NA 33.33 NA 14.29 18.18 14.29 NA NA 9.09 NA 14.29 NA 16.67 NA 16.67 NA 12.00 42.86 NA 14.29 NA 0.00 NA NA NA NA 0.00 K intron_retention CG4699 chr3R + chr3R_11624133_11624445 chr3R_11624132_11624133;chr3R_11624445_11624446 chr3R_11623809_11624132;chr3R_11624446_11624758 97.14 96.77 100.00 94.34 86.67 96.15 100.00 98.33 94.59 97.62 97.06 98.31 100.00 97.06 97.92 96.77 100.00 96.30 97.44 98.70 100.00 99.11 98.08 92.00 96.55 93.94 97.96 100.00 95.00 97.56 97.37 92.31 95.86 98.15 98.11 94.87 93.33 88.89 98.25 100.00 98.28 97.56 100.00 95.92 100.00 95.00 100.00 95.08 95.18 92.50 97.87 96.55 97.14 92.31 97.56 96.67 96.55 92.22 K intron_retention CG5214,I_chr3R_7070385_7070508 chr3R + chr3R_7070769_7070842 chr3R_7070768_7070769;chr3R_7070842_7070843 chr3R_7070667_7070768;chr3R_7070843_7071382 0.97 1.27 0.00 3.85 0.00 0.00 0.00 2.34 0.92 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.03 0.00 1.89 2.07 1.53 2.30 0.00 2.37 0.00 3.33 0.70 4.27 0.00 0.00 1.20 2.61 7.37 1.06 1.68 2.48 1.85 5.08 0.97 0.00 1.59 0.54 1.69 1.16 1.61 1.11 2.04 0.60 2.11 0.79 1.18 0.00 0.68 0.00 0.62 K alternative_acceptor dnc,I_chrX_3150245_3150319,I_chrX_3150351_3152643 chrX + chrX_3226580_3228183 chrX_3226580_3228177 chrX_3226475_3226579;chrX_3228184_3228364 60.00 60.00 58.33 95.83 72.73 60.00 25.93 72.73 60.71 NA NA 75.00 50.00 66.67 57.89 81.25 35.71 46.67 4.35 78.12 45.45 18.18 52.94 60.00 NA 53.33 46.15 NA NA NA 71.43 NA 55.56 60.00 66.67 87.50 50.00 55.56 60.00 52.63 NA 62.50 60.00 NA NA NA 36.36 72.73 60.00 63.64 50.00 NA NA NA 65.00 NA NA 63.64 K intron_retention CG10882 chr2L - chr2L_2232189_2232256 chr2L_2232188_2232189;chr2L_2232256_2232257 chr2L_2231202_2232188;chr2L_2232257_2233047 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG14657 chr3R - chr3R_645633_646054 chr3R_645633_645780;chr3R_645989_646054 chr3R_645781_645988 chr3R_645516_645632;chr3R_646055_647174 17.65 18.52 11.11 14.29 16.67 25.00 38.71 27.27 25.86 25.00 9.09 14.58 90.48 20.00 19.35 15.62 29.41 16.13 37.50 26.83 23.53 33.33 7.69 21.21 4.17 9.38 16.28 16.67 18.18 10.53 21.43 NA 14.29 31.25 14.81 2.50 15.15 9.38 10.71 19.35 12.50 21.15 27.78 10.34 NA 11.54 16.00 25.00 26.83 21.21 21.05 22.73 8.70 13.64 21.62 17.65 10.53 15.38 K intron_retention Mocs1 chr3L + chr3L_11065511_11065661 chr3L_11065510_11065511;chr3L_11065661_11065662 chr3L_11064659_11065510;chr3L_11065662_11066454 59.69 47.06 66.67 68.00 87.50 58.33 68.00 38.10 50.00 40.00 NA 57.89 NA 63.64 53.33 77.78 NA 75.00 50.00 59.38 46.67 61.11 65.71 60.87 66.67 46.15 51.43 52.38 44.23 69.57 63.16 47.83 79.31 68.42 63.16 50.00 60.00 52.63 62.50 58.33 54.05 62.50 77.78 62.96 48.72 51.43 64.71 47.37 52.00 65.38 53.85 66.67 66.67 69.23 57.14 75.00 50.00 59.09 N jcn_only_AA CG17159,CG17162,noncoding_25215 chrXHet - chrXHet_66049_66121 chrXHet_66052_66121 chrXHet_66122_66324;chrXHet_64549_66048 34.88 NA 0.00 NA 0.00 52.17 27.78 33.33 34.62 NA NA 31.88 NA 36.00 25.71 46.15 NA 44.44 NA 36.99 NA 0.00 NA 27.50 NA NA NA NA NA 35.14 26.67 46.43 30.51 30.43 0.00 45.16 NA 0.00 45.16 40.58 NA 46.00 0.00 38.71 NA 23.53 53.33 44.29 28.89 52.00 46.43 40.74 NA NA 0.00 NA NA 36.36 K alternative_donor CG12753,CG14894,RI_chr3R_12268071_12268135,RI_chr3R_12268071_12268141,RI_chr3R_12268071_12268661,Pak3 chr3R - chr3R_12268071_12268145;chr3R_12268071_12268124;chr3R_12268071_12268141;chr3R_12268071_12268135 chr3R_12268071_12268661 chr3R_12267971_12268070;chr3R_12268662_12268688 0.00 1.67 0.00 3.95 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 1.28 1.72 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1115,F_chr3R_1052705_1053045 chr3R + chr3R_1052701_1053045 chr3R_1052700_1052701;chr3R_1053045_1053046 chr3R_1052605_1052700;chr3R_1053046_1053145 23.08 17.07 40.00 44.44 19.05 50.00 19.57 21.95 29.31 23.53 31.58 25.58 33.33 31.82 29.17 35.00 46.15 16.00 25.00 30.23 22.22 15.38 26.67 21.74 20.00 26.32 31.25 28.12 30.00 16.67 29.41 20.00 20.00 33.33 27.27 25.00 13.64 21.88 24.39 12.20 20.00 22.92 16.67 20.00 20.69 17.39 24.44 30.77 24.00 20.83 20.00 25.00 21.05 19.15 23.08 16.28 22.97 21.43 K jcn_only_AA rdx,I_chr3R_9796825_9822742 chr3R - chr3R_9795262_9795329 chr3R_9795280_9795329 chr3R_9795330_9795508;chr3R_9795119_9795261 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 1.92 2.33 0.93 0.00 3.70 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention I_chr3R_16141663_16144698,CG5077,I_chr3R_16147605_16147670 chr3R + chr3R_16146174_16147059 chr3R_16146173_16146174;chr3R_16147059_16147060 chr3R_16145951_16146173;chr3R_16147060_16147135 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 86.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9770053_9781634 chr2R_9770053_9771599 chr2R_9769906_9770052;chr2R_9781635_9782097 92.16 92.13 96.15 92.51 93.62 93.40 98.13 90.22 94.01 81.82 91.36 96.72 91.95 97.81 92.62 95.08 97.27 97.12 92.25 89.01 90.91 86.67 91.79 93.33 93.15 96.64 93.86 96.75 85.71 94.68 89.31 90.91 84.80 95.63 93.94 90.43 92.25 95.35 90.00 90.08 76.47 91.88 93.40 90.91 80.00 83.33 83.33 91.38 96.32 85.71 92.42 92.16 100.00 83.33 91.36 92.86 87.50 83.33 K intron_retention Imp,RI_chrX_10699665_10700695 chrX - chrX_10691471_10691540 chrX_10691470_10691471;chrX_10691540_10691541 chrX_10690594_10691470;chrX_10691541_10691696 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21308996_21309579;chr2L_21309092_21309579;chr2L_21309019_21309579 chr2L_21309084_21309579 chr2L_21309580_21309679;chr2L_21308992_21308995 13.39 NA NA 0.00 NA NA 28.57 12.50 12.50 NA NA NA NA NA NA 15.38 16.67 NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA 14.29 NA NA NA 0.00 NA 9.09 0.00 NA NA NA NA NA NA NA NA NA K intron_retention CG10359,CG10357 chr3L + chr3L_3612493_3613074 chr3L_3612492_3612493;chr3L_3613074_3613075 chr3L_3612204_3612492;chr3L_3613075_3613205 0.00 0.00 0.00 3.39 0.00 2.86 4.55 0.00 0.00 0.00 0.00 0.00 0.00 2.63 2.38 0.00 0.00 0.00 0.00 0.00 2.78 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 1.54 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 K intron_retention Atu chr3R + chr3R_1439215_1439281 chr3R_1439214_1439215;chr3R_1439281_1439282 chr3R_1439150_1439214;chr3R_1439282_1439345 0.00 0.00 0.00 10.34 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 4.88 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.64 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 K cassette Tm1 chr3R + chr3R_11112287_11113974 chr3R_11112287_11113045;chr3R_11113544_11113974 chr3R_11113046_11113543 chr3R_11112274_11112286;chr3R_11113975_11115161 100.00 100.00 100.00 97.92 100.00 100.00 98.73 98.39 99.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 97.80 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.92 100.00 98.28 98.68 100.00 100.00 100.00 97.96 100.00 97.44 100.00 98.88 97.37 100.00 96.97 100.00 100.00 100.00 100.00 100.00 98.41 100.00 100.00 100.00 100.00 100.00 98.53 98.73 K intron_retention CG1109,CG1347 chr3R + chr3R_1486548_1486633 chr3R_1486547_1486548;chr3R_1486633_1486634 chr3R_1486391_1486547;chr3R_1486634_1486970 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 2.94 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 6.67 0.00 0.00 0.00 0.00 11.76 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 5.26 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 11.76 0.00 0.00 0.00 K cassette F_chr3RHet_1879085_1900358,Alg-2 chr3RHet - chr3RHet_1895350_1898553 chr3RHet_1895350_1896506;chr3RHet_1896621_1898553 chr3RHet_1896507_1896620 chr3RHet_1894737_1895349;chr3RHet_1898554_1898894 0.00 0.93 1.52 0.37 0.00 0.00 0.38 0.32 0.58 0.00 0.00 0.36 0.81 0.00 0.00 0.41 0.00 0.00 0.57 0.25 0.00 3.08 1.09 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.61 1.37 1.12 0.00 0.00 0.00 1.45 0.00 0.33 0.67 0.00 0.85 0.00 0.00 0.00 0.30 0.00 0.85 0.00 0.00 0.97 0.00 0.78 0.61 0.56 K intron_retention CG6424 chr2R - chr2R_13605255_13606678 chr2R_13605254_13605255;chr2R_13606678_13606679 chr2R_13604806_13605254;chr2R_13606679_13606819 14.29 NA NA NA NA NA 14.29 NA 25.00 NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CE_chrX_20766225_20927825,CG1529,RI_chrX_20902550_20902613 chrX - chrX_20902550_20902613 chrX_20902550_20902601 chrX_20902450_20902549;chrX_20902614_20902713 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG2310,I_chr3R_25318474_25319142 chr3R - chr3R_25318474_25319136;chr3R_25318474_25319163;chr3R_25318474_25318925;chr3R_25318474_25319093;chr3R_25318474_25318971;chr3R_25318474_25319004;chr3R_25318474_25319167 chr3R_25318474_25319142 chr3R_25318374_25318473;chr3R_25319168_25319224 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CycA,RE_chr3L_11825347_11826111 chr3L - chr3L_11825347_11826586 chr3L_11825347_11825973 chr3L_11825247_11825346;chr3L_11826587_11826636 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.62 100.00 100.00 100.00 100.00 100.00 100.00 99.40 100.00 100.00 99.32 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.37 100.00 100.00 98.82 100.00 99.36 98.89 100.00 99.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.95 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention thoc5 chr2R + chr2R_19841762_19841821 chr2R_19841761_19841762;chr2R_19841821_19841822 chr2R_19841616_19841761;chr2R_19841822_19842616 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 1.43 0.00 0.00 0.00 2.00 0.00 0.00 0.00 1.32 0.00 5.13 0.00 0.00 0.00 3.45 6.06 6.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 5.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette nrv2,I_chr2L_6791842_6794492,I_chr2L_6793397_6794492,I_chr2L_6793405_6793916,I_chr2L_6793405_6794499,I_chr2L_6793684_6794492 chr2L - chr2L_6791842_6794492 chr2L_6791842_6793227;chr2L_6793374_6794492 chr2L_6793228_6793373 chr2L_6791742_6791841;chr2L_6794493_6794592 95.91 93.33 96.30 97.44 100.00 100.00 96.00 95.12 98.18 93.33 94.12 95.35 95.00 100.00 96.97 97.56 92.31 100.00 93.55 97.56 100.00 100.00 92.31 91.89 92.86 100.00 96.30 NA 72.73 84.62 96.15 83.33 87.10 100.00 100.00 100.00 97.06 90.00 91.89 95.65 93.33 96.23 96.15 95.45 95.45 96.30 95.24 95.83 98.46 89.47 100.00 100.00 93.75 85.00 100.00 100.00 90.32 88.46 K intron_retention betaggt-I,I_chr2L_4946222_4946668 chr2L + chr2L_4946222_4946906 chr2L_4946221_4946222;chr2L_4946906_4946907 chr2L_4946122_4946221;chr2L_4946907_4947734 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 1.23 0.00 10.00 3.28 NA NA 0.00 5.88 0.00 0.00 0.00 0.00 0.00 9.80 3.49 0.00 0.00 0.00 0.00 3.12 4.44 0.00 0.00 0.00 0.00 0.00 0.00 5.13 0.00 0.00 1.08 3.08 0.00 2.70 0.00 0.00 3.39 4.44 1.92 0.00 0.00 0.00 1.54 0.00 0.00 3.85 0.00 0.00 0.00 0.00 N alternative_donor CG42533,F_chr2L_7474506_7474872,F_chr2L_7476906_7476978 chr2L - chr2L_7474506_7476978 chr2L_7474506_7474622 chr2L_7474406_7474505;chr2L_7476979_7477078 5.56 3.57 3.45 1.82 4.17 4.55 10.64 2.60 5.17 9.09 5.56 5.26 12.00 4.65 6.90 3.85 2.50 6.45 4.26 22.83 5.56 8.00 5.56 8.33 7.69 3.23 9.52 14.29 10.53 5.56 4.17 6.67 10.34 3.75 6.67 4.76 18.18 7.14 9.52 9.09 4.76 3.03 3.23 3.85 12.50 5.00 7.14 7.41 4.00 5.26 8.33 7.14 7.14 0.00 4.76 7.14 5.26 3.85 K jcn_only_AD g,I_chrX_13628772_13629563 chrX - chrX_13622851_13622915 chrX_13622851_13622912 chrX_13622718_13622850;chrX_13622916_13623056 97.83 89.58 98.55 97.37 98.18 98.63 97.64 97.56 97.85 100.00 98.61 97.30 100.00 98.46 93.07 97.87 98.25 97.10 97.30 95.87 100.00 96.94 97.83 100.00 96.08 95.16 96.04 95.83 97.26 96.59 96.15 97.59 100.00 96.52 97.59 97.12 93.52 100.00 98.26 98.26 97.50 96.27 97.01 97.47 100.00 98.25 98.10 98.33 98.53 98.98 98.85 94.44 98.46 98.70 100.00 98.48 95.00 100.00 K intron_retention quemao,I_chr3L_7341776_7344368 chr3L + chr3L_7342118_7344368 chr3L_7342117_7342118;chr3L_7344368_7344369 chr3L_7341963_7342117;chr3L_7344369_7344468 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.83 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 1.04 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG5028 chr3R + chr3R_21508154_21509194 chr3R_21509106_21509194 chr3R_21509195_21509414 100.00 100.00 100.00 98.99 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 98.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention SdhA,I_chr2R_15283283_15283411,I_chr2R_15283319_15283369 chr2R - chr2R_15283319_15283369 chr2R_15283318_15283319;chr2R_15283369_15283370 chr2R_15283219_15283318;chr2R_15283370_15283469 90.91 91.67 NA 88.89 90.91 NA 96.00 100.00 88.89 NA 87.50 82.35 NA 91.67 NA 87.50 NA NA 90.00 92.31 NA NA 87.50 NA 88.89 94.12 90.00 100.00 100.00 NA 87.50 NA NA 89.47 NA 100.00 78.57 NA 100.00 80.00 NA 94.44 92.31 NA NA 88.89 NA NA 93.75 NA 100.00 90.00 NA NA 94.44 NA NA NA K mutually_exclusive sws chrX - chrX_7852516_7854028,chrX_7854146_7855209 chrX_7852516_7853010,chrX_7853128_7855209 chrX_7854029_7854145 chrX_7853011_7853127 chrX_7852304_7852515;chrX_7855210_7855396 12.50 8.33 9.09 13.79 9.52 9.09 0.00 11.11 7.69 37.50 5.88 9.68 14.29 5.88 13.64 16.00 13.33 5.26 7.14 5.45 5.88 15.09 15.22 11.54 17.24 10.53 10.26 6.45 28.57 16.67 4.76 17.39 21.74 12.90 8.70 13.04 10.87 11.43 11.48 11.63 14.29 11.90 12.50 12.50 13.33 10.34 12.50 15.38 11.76 16.67 9.76 20.00 29.03 14.29 13.04 21.43 21.95 22.22 K jcn_only_AD MAPk-Ak2,RI_chrX_5655618_5656137,I_chrX_5656715_5657427,I_chrX_5656715_5657893,I_chrX_5656715_5657974 chrX - chrX_5656715_5658126;chrX_5656715_5658101 chrX_5656715_5658141 chrX_5656615_5656714;chrX_5658142_5658214 0.72 0.88 0.72 0.00 0.82 1.10 2.67 0.46 0.71 1.00 1.98 1.30 0.00 2.04 0.83 1.10 0.00 0.85 0.81 0.39 0.00 1.96 1.08 1.23 0.00 0.00 3.01 3.30 0.00 0.00 0.60 2.04 0.00 0.58 2.17 0.79 0.60 1.55 0.62 1.68 0.00 0.00 0.00 0.62 0.00 2.27 0.69 0.00 1.32 0.00 0.00 0.00 0.00 0.88 0.00 1.44 1.61 1.35 K intron_retention pasha chr3R + chr3R_27445167_27445231 chr3R_27445166_27445167;chr3R_27445231_27445232 chr3R_27444963_27445166;chr3R_27445232_27446177 0.00 NA NA 0.00 NA NA NA 0.00 10.53 NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 4.55 NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K intron_retention OstStt3 chr3R - chr3R_20892801_20892854 chr3R_20892800_20892801;chr3R_20892854_20892855 chr3R_20892422_20892800;chr3R_20892855_20893053 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Cip4,E_chr3L_4351187_4363026,I_chr3L_4363128_4363769,I_chr3L_4363386_4363987 chr3L - chr3L_4338183_4363026 chr3L_4338182_4338183;chr3L_4363026_4363027 chr3L_4338067_4338182;chr3L_4363027_4363126 0.00 0.00 0.00 1.29 0.00 2.06 0.39 0.99 1.29 0.00 5.80 0.00 2.11 0.00 1.31 1.06 1.65 0.00 0.00 1.61 5.19 0.00 0.84 0.00 0.00 0.00 1.27 0.00 2.70 1.42 0.78 0.00 0.00 1.46 0.00 0.00 0.00 0.00 1.59 1.49 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.74 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD faf,RI_chr3R_27603474_27603893,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27602901_27603893 chr3R_27602905_27603893 chr3R_27603894_27603993;chr3R_27602832_27602900 96.84 97.14 97.87 88.68 96.43 96.36 92.06 95.38 99.01 94.87 100.00 94.12 97.44 93.18 93.10 97.33 100.00 100.00 95.83 95.65 97.67 93.44 97.87 98.51 96.00 98.15 98.59 96.00 100.00 95.12 90.74 NA 93.18 97.56 94.12 96.23 98.44 97.18 95.45 97.62 NA 96.51 94.29 100.00 NA 96.55 96.00 100.00 97.73 100.00 97.75 95.31 96.15 NA 98.46 100.00 100.00 NA K intron_retention l(2)k01209,I_chr2R_13308079_13310771,I_chr2R_13309452_13310771,RI_chr2R_13310877_13311160 chr2R + chr2R_13308079_13311160 chr2R_13308078_13308079;chr2R_13311160_13311161 chr2R_13307979_13308078;chr2R_13311161_13311260 14.29 9.52 11.76 14.63 16.67 8.11 14.29 16.36 13.24 16.00 10.71 12.86 15.00 22.22 8.82 17.54 9.09 15.15 21.88 19.54 9.68 20.37 12.50 11.76 11.11 25.93 12.90 8.70 29.79 17.86 16.67 14.29 16.09 18.87 16.67 25.86 10.71 12.28 12.90 13.64 11.48 16.95 14.29 13.73 11.90 17.31 15.56 29.55 15.25 9.76 8.16 16.13 11.76 6.25 18.92 8.70 14.58 19.61 K alternative_donor CG3114,RI_chrX_168562_168685 chrX - chrX_167426_167502 chrX_167426_167493 chrX_167216_167425;chrX_167503_168561 5.56 NA 6.67 15.00 NA 5.56 NA 4.55 6.67 NA NA 0.00 NA NA NA 15.79 NA 17.65 0.00 5.26 NA 0.00 4.35 NA NA NA 11.76 NA 5.56 0.00 0.00 12.50 10.00 4.55 0.00 5.00 4.76 NA 10.00 7.69 NA 0.00 NA NA 13.33 5.56 NA 3.85 0.00 NA 7.14 NA NA NA 5.88 NA NA 6.67 N jcn_only_AD eIF5B chr3L - chr3L_3447725_3457214 chr3L_3447725_3447949 chr3L_3447648_3447724;chr3L_3457215_3457347 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention rdgBbeta,I_chr2R_13584056_13584177,CRE_chr2R_13584378_13585329 chr2R - chr2R_13584056_13584116 chr2R_13584055_13584056;chr2R_13584116_13584117 chr2R_13583956_13584055;chr2R_13584117_13584157 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 3.70 NA NA NA NA NA 0.00 NA NA 0.00 K alternative_acceptor CG30007 chr2R + chr2R_5782197_5782254 chr2R_5782197_5782251 chr2R_5781860_5782196;chr2R_5782255_5782701 39.29 NA NA 33.33 NA NA 36.00 50.00 44.44 NA NA 33.33 NA NA 36.36 47.06 41.67 NA 50.00 39.29 NA NA 46.15 50.00 NA 33.33 26.67 36.36 NA NA 43.75 NA NA 50.00 NA NA 36.36 NA NA 20.00 NA 40.91 NA 36.36 NA NA NA NA 40.00 NA NA NA NA NA 37.50 NA NA NA K alternative_donor CG15739 chrX + chrX_11767537_11767914 chrX_11767578_11767914 chrX_11767915_11768298;chrX_11767352_11767536 2.08 3.12 0.00 3.23 0.00 3.57 0.00 0.00 3.08 0.00 4.76 0.00 0.00 0.00 5.13 6.25 4.17 15.00 5.41 3.51 0.00 9.52 0.00 2.22 0.00 3.70 10.00 0.00 NA 0.00 5.00 5.88 0.00 4.08 0.00 0.00 0.00 3.85 0.00 3.23 NA 1.54 0.00 0.00 NA 3.45 5.88 0.00 3.64 3.70 2.00 0.00 0.00 3.85 0.00 4.17 2.17 0.00 K jcn_only_AA CG11665,I_chr2R_1530001_1531096,RI_chr2R_1530001_1531145,I_chr2R_1531244_1531321,RI_chr2R_1535330_1540011 chr2R - chr2R_1531224_1531321 chr2R_1531244_1531321 chr2R_1531322_1531421;chr2R_1531146_1531223 1.75 3.28 3.92 0.85 0.00 2.04 1.09 2.46 1.75 0.00 0.00 0.00 0.00 0.00 2.53 1.05 1.75 2.94 0.00 1.05 0.00 4.35 0.00 4.84 0.00 0.00 5.19 4.55 5.00 5.13 2.70 NA 0.00 1.83 7.32 6.25 0.00 3.92 3.92 1.69 4.00 1.15 3.51 0.00 NA 7.14 1.79 NA 2.94 6.06 1.18 0.00 0.00 0.00 1.16 1.67 4.35 NA K intron_retention CG5270,I_chr3R_7253146_7253201,F_chr3R_7256294_7256363 chr3R + chr3R_7253142_7253201 chr3R_7253141_7253142;chr3R_7253201_7253202 chr3R_7253046_7253141;chr3R_7253202_7253301 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 2.13 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 6.12 NA 0.00 NA NA NA NA 0.00 NA 3.45 NA NA NA 0.00 0.00 0.00 NA N intron_retention CG17760 chr2R + chr2R_8513731_8514257 chr2R_8513730_8513731;chr2R_8514257_8514258 chr2R_8513705_8513730;chr2R_8514258_8514421 100.00 100.00 100.00 100.00 NA 100.00 76.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA NA 100.00 100.00 NA 82.86 NA 100.00 NA NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 K jcn_only_AD CG6178 chr3R + chr3R_19978381_19978811;chr3R_19978326_19978811 chr3R_19978271_19978811 chr3R_19978812_19979489;chr3R_19978101_19978270 4.00 8.33 2.17 4.00 3.45 4.88 12.50 5.71 8.33 0.00 2.94 7.69 0.00 2.04 3.92 2.13 4.55 0.00 13.04 1.12 0.00 0.00 6.82 0.00 4.55 7.50 0.00 0.00 3.57 NA 5.77 3.03 7.69 6.25 7.69 0.00 0.00 8.00 4.35 11.76 0.00 4.17 8.11 NA 17.24 2.94 4.08 8.70 1.37 4.76 0.00 0.00 0.00 8.70 6.82 3.85 6.12 3.64 K intron_retention RpS5a,I_chrX_17038786_17039048,I_chrX_17041234_17041901,I_chrX_17041234_17041720,RI_chrX_17041234_17041750,RI_chrX_17041234_17041760,I_chrX_17041234_17041832,I_chrX_17041234_17041844,I_chrX_17041976_17042236 chrX - chrX_17041234_17042089 chrX_17041233_17041234;chrX_17042089_17042090 chrX_17041175_17041233;chrX_17042090_17042158 27.70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 19.05 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA K multi_cassette PP2A-B',RI_chr3R_13993929_13994503 chr3R + chr3R_13993590_13997250 chr3R_13993590_13995205;chr3R_13995271_13995378;chr3R_13995821_13997250 chr3R_13995206_13995270;chr3R_13995379_13995820 chr3R_13993510_13993589;chr3R_13997251_13997425 75.00 66.67 75.00 75.00 NA NA NA 22.22 75.00 NA NA 60.00 NA NA NA NA NA NA NA 80.00 NA 50.00 50.00 60.00 66.67 NA NA NA 50.00 100.00 NA 75.00 100.00 75.00 100.00 80.00 75.00 75.00 75.00 60.00 100.00 60.00 NA 100.00 66.67 100.00 100.00 75.00 100.00 NA 80.00 NA 100.00 66.67 NA 66.67 66.67 75.00 K alternative_acceptor CG31999,I_chr4_236187_238030,I_chr4_236686_238031,I_chr4_238453_238873,I_chr4_238809_238873,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_238453_238873;chr4_238809_238873 chr4_238121_238873 chr4_238874_238973;chr4_238032_238120 98.34 100.00 96.08 96.15 97.62 100.00 98.94 97.03 97.84 100.00 90.48 98.51 97.22 97.14 98.28 98.02 96.61 100.00 97.73 97.60 92.31 100.00 97.14 100.00 100.00 93.75 96.30 NA 100.00 97.14 100.00 97.50 97.30 98.39 100.00 100.00 100.00 100.00 100.00 96.23 100.00 98.48 98.21 100.00 100.00 97.14 100.00 98.00 98.73 97.50 97.83 100.00 97.06 100.00 100.00 100.00 96.97 98.63 K intron_retention Msp-300,I_chr2L_5197634_5197866,snoRNA:Psi18S-525k,noncoding_1106 chr2L + chr2L_5202303_5202764 chr2L_5202302_5202303;chr2L_5202764_5202765 chr2L_5199343_5202302;chr2L_5202765_5202803 0.00 0.00 0.00 3.77 0.00 2.78 0.00 9.84 2.94 0.00 9.52 2.44 0.00 0.00 0.00 4.76 0.00 0.00 6.45 2.35 0.00 0.00 1.43 2.35 0.00 4.76 5.13 10.14 0.00 5.56 0.00 0.00 3.85 5.06 0.00 0.00 0.98 1.23 0.00 0.00 NA 4.44 5.13 0.00 0.00 0.00 0.00 12.50 3.08 0.00 2.33 4.76 2.56 0.00 3.45 0.00 0.00 NA K alternative_acceptor CG17508,RI_chr2R_1496995_1497120 chr2R + chr2R_1496995_1497568;chr2R_1496995_1497637 chr2R_1496995_1497120 chr2R_1496895_1496994;chr2R_1497638_1497761 8.11 6.98 6.45 19.74 4.76 8.11 21.62 12.26 9.48 7.69 4.88 11.69 17.50 11.11 5.77 9.68 5.45 4.17 11.94 7.69 4.55 5.00 6.67 5.88 17.39 7.32 10.64 11.11 16.67 6.06 7.02 7.14 6.25 10.23 12.90 12.50 3.23 6.90 5.71 7.14 13.64 8.70 4.17 4.76 4.35 10.64 11.54 4.76 10.38 8.70 9.26 7.89 12.50 11.43 7.81 9.30 8.82 9.62 K intron_retention AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9004021_9004854 chrX_9004020_9004021;chrX_9004854_9004855 chrX_9003588_9004020;chrX_9004855_9004862 92.86 NA NA NA NA NA NA 88.89 100.00 NA NA NA NA NA NA 92.31 NA NA NA 90.00 NA 100.00 NA NA 88.89 100.00 NA NA NA 100.00 NA NA 94.12 91.67 NA NA NA NA NA 92.86 88.89 NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA 87.50 NA NA NA N jcn_only_AA vir-1,I_chr2L_12404178_12407208,RE_chr2L_12409622_12421640,I_chr2L_12421830_12423260 chr2L - chr2L_12421862_12423322;chr2L_12421830_12423322 chr2L_12421902_12423322 chr2L_12423323_12423328;chr2L_12421816_12421829 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 3.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_donor sxc,I_chr2R_1203985_1205289,I_chr2R_1208121_1213310,I_chr2R_1213177_1213308 chr2R + chr2R_1194785_1194977;chr2R_1194919_1194977 chr2R_1194858_1194977 chr2R_1194978_1195157;chr2R_1194775_1194784 0.00 NA NA 0.00 NA NA NA 11.11 12.50 NA NA 0.00 NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD RpS30 chr3R + chr3R_16676350_16676576 chr3R_16676418_16676576 chr3R_16676577_16676665;chr3R_16676349_16676349 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 1.32 0.05 0.00 0.00 0.00 0.00 0.05 0.06 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 N jcn_only_AA CG1416,I_chr2L_21758100_21758179,I_chr2L_21758143_21758183,I_chr2L_21758143_21758209 chr2L + chr2L_21758143_21758209;chr2L_21758143_21758205;chr2L_21758143_21758183 chr2L_21758143_21758201 chr2L_21758116_21758142;chr2L_21758210_21758279 96.09 96.43 97.44 93.88 98.15 98.39 95.16 83.70 84.03 68.75 95.00 91.47 95.65 80.60 72.88 81.31 96.67 84.95 98.00 88.89 97.87 97.65 93.75 88.42 100.00 96.77 97.50 96.30 96.43 97.62 82.89 96.10 100.00 84.62 96.08 NA 98.59 97.01 82.02 84.27 100.00 82.69 100.00 100.00 96.12 95.59 84.52 97.01 83.69 96.81 100.00 80.95 100.00 96.55 89.00 96.84 85.45 86.87 K jcn_only_AA rho-7,noncoding_6143 chr2R - chr2R_7876063_7876127 chr2R_7876069_7876127 chr2R_7876128_7876254;chr2R_7876008_7876062 100.00 95.65 97.73 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 98.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.34 100.00 100.00 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 98.04 100.00 100.00 100.00 100.00 98.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.36 K jcn_only_AA Mmp1,E_chr2R_20560380_20562585,I_chr2R_20564123_20565214,I_chr2R_20569965_20572193 chr2R - chr2R_20559830_20562495 chr2R_20560840_20562495 chr2R_20562496_20562664;chr2R_20559732_20559829 0.32 0.00 0.00 0.63 0.00 0.00 0.32 0.00 0.79 1.57 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 3.12 0.24 0.00 0.00 0.58 0.00 0.47 0.39 0.91 0.32 0.62 1.46 0.29 0.75 0.00 0.57 0.00 0.18 0.30 2.13 0.45 0.00 0.48 0.54 0.58 0.37 2.29 1.11 0.26 0.51 0.94 0.59 0.00 0.39 0.00 0.37 0.63 K jcn_only_AD CG5514,RI_chr3R_23768206_23768306,Gp93 chr3R + chr3R_23767856_23768309;chr3R_23767860_23768309 chr3R_23768206_23768309 chr3R_23768310_23768406 1.47 0.00 1.96 0.00 3.45 2.33 2.13 0.00 1.01 4.00 0.00 1.39 0.00 0.00 2.44 0.00 0.00 2.17 2.04 3.92 6.45 NA 1.72 0.00 0.00 0.00 1.82 4.00 2.08 0.00 0.00 1.92 1.47 1.61 4.44 0.00 0.00 3.03 2.83 1.12 1.47 1.15 0.00 9.76 4.49 1.23 2.06 0.00 2.90 0.00 1.37 NA 2.60 0.00 1.92 1.82 0.00 0.00 K intron_retention sec23,I_chr3R_1474873_1475080,I_chr3R_1477727_1478102 chr3R + chr3R_1476908_1476975 chr3R_1476907_1476908;chr3R_1476975_1476976 chr3R_1476754_1476907;chr3R_1476976_1477524 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Hrb98DE,I_chr3R_24425722_24428493,I_chr3R_24426291_24426781,RI_chr3R_24429041_24431183 chr3R + chr3R_24426291_24426439 chr3R_24426290_24426291;chr3R_24426439_24426440 chr3R_24426191_24426290;chr3R_24426440_24426915 6.17 7.14 3.60 4.81 5.13 5.33 5.04 10.20 6.85 20.00 0.00 7.23 3.17 6.17 4.94 4.58 2.22 3.45 7.14 3.17 NA 5.52 10.94 11.43 18.31 7.55 6.31 3.30 8.43 7.04 6.06 4.60 9.68 5.65 10.42 12.37 6.67 5.56 4.84 5.84 8.47 6.16 5.17 6.32 5.41 9.26 6.73 5.10 5.03 7.06 10.40 10.00 5.33 12.84 6.38 5.88 7.37 4.21 K jcn_only_AA CG8184,I_chrX_15620707_15620769 chrX + chrX_15620707_15620769 chrX_15620707_15620765 chrX_15620607_15620706;chrX_15620770_15620869 99.07 100.00 100.00 98.41 98.61 100.00 100.00 97.06 98.59 100.00 100.00 100.00 100.00 100.00 98.44 100.00 100.00 99.01 98.99 99.49 97.47 99.59 99.32 99.14 98.91 100.00 99.07 96.20 97.46 98.04 99.15 95.52 99.41 99.44 99.02 99.03 99.44 97.80 98.79 98.21 98.61 100.00 98.94 100.00 99.14 100.00 99.00 100.00 96.30 98.91 98.73 100.00 97.06 100.00 99.29 98.75 98.55 98.02 K cassette CG42248,I_chrX_705402_712468 chrX - chrX_705402_712438;chrX_705402_712468 chrX_705402_705626;chrX_705723_712438,chrX_705723_712468 chrX_705627_705722 chrX_705302_705401;chrX_712469_712568 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908142_9908424,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907784_9908424;chr2L_9907784_9908531;chr2L_9907784_9908405 chr2L_9907784_9908307 chr2L_9907756_9907783;chr2L_9908532_9908619 8.00 9.43 13.64 8.33 11.54 9.38 12.86 13.16 12.80 9.09 8.00 7.53 10.26 6.82 13.64 16.05 15.91 8.00 12.50 4.29 10.00 5.51 7.07 7.69 5.56 4.55 8.33 11.11 4.17 10.71 6.67 8.82 5.80 13.04 10.61 1.94 7.04 4.65 6.56 7.22 9.09 10.99 14.63 5.13 5.26 2.63 2.99 4.76 9.64 9.09 6.17 7.69 3.85 6.52 9.68 4.00 3.45 4.55 K intron_retention iPLA2-VIA chr3L - chr3L_9856717_9857292 chr3L_9856716_9856717;chr3L_9857292_9857293 chr3L_9856421_9856716;chr3L_9857293_9857459 2.04 0.00 5.56 2.33 0.00 0.00 6.32 3.61 5.88 13.33 8.33 5.88 2.86 0.00 2.04 6.35 2.44 3.92 4.17 4.08 0.00 10.53 2.44 0.00 4.55 4.44 9.52 7.14 3.85 0.00 0.00 4.76 3.39 0.00 0.00 0.00 1.89 0.00 3.92 1.22 0.00 4.94 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 1.54 0.00 0.00 0.00 3.70 0.00 0.00 3.57 K alternative_donor BicD,Aac11,I_chr2L_17475843_17475910 chr2L - chr2L_17475355_17475534 chr2L_17475355_17475407 chr2L_17474918_17475354;chr2L_17475535_17475615 91.67 96.77 88.46 89.23 81.25 96.43 93.48 88.24 91.67 94.74 93.33 88.71 97.06 93.55 93.10 89.06 85.71 86.96 93.62 84.48 95.24 95.83 94.44 88.89 94.44 91.67 97.06 89.66 69.05 93.75 91.89 88.24 91.11 86.44 91.30 88.10 80.95 95.00 96.00 90.91 84.75 93.44 82.05 93.75 66.67 81.11 97.87 74.07 90.91 93.02 95.65 90.48 94.87 93.02 89.19 97.62 97.06 81.52 K jcn_only_AD yu chrX - chrX_5309489_5309560 chrX_5309489_5309554 chrX_5309355_5309488;chrX_5309561_5309951 0.00 0.52 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.56 0.28 0.00 0.00 0.36 0.00 0.00 0.66 0.81 1.54 0.00 0.00 0.41 0.00 0.58 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.68 0.00 0.65 0.00 0.92 0.36 0.00 0.87 0.00 1.46 0.00 0.00 0.00 K intron_retention stck,I_chr3R_4184313_4184380,I_chr3R_4184660_4184730 chr3R + chr3R_4184127_4184192 chr3R_4184126_4184127;chr3R_4184192_4184193 chr3R_4184063_4184126;chr3R_4184193_4184312 3.85 3.64 6.82 2.41 0.00 0.00 4.41 2.63 3.17 0.00 4.65 6.02 0.00 5.71 8.51 8.47 4.35 0.00 2.13 5.38 4.26 1.23 5.08 4.17 11.76 3.92 6.90 12.12 10.81 5.41 0.00 6.25 6.90 3.66 0.00 4.76 3.57 0.00 0.00 7.04 0.00 1.83 4.35 0.00 3.33 5.88 1.79 7.41 2.70 8.93 6.12 0.00 1.82 3.85 1.59 0.00 2.63 5.71 K intron_retention eIF-4E,RI_chr3L_9394054_9394756,I_chr3L_9394308_9394756,RI_chr3L_9394468_9394631,I_chr3L_9394468_9394659,I_chr3L_9394468_9395155,I_chr3L_9394468_9395240,I_chr3L_9394468_9395446,I_chr3L_9394685_9394756,RI_chr3L_9394707_9395016,RI_chr3L_9394707_9395198,I_chr3L_9394707_9395309,I_chr3L_9394819_9394884,I_chr3L_9394819_9395016,I_chr3L_9394819_9395198,I_chr3L_9394819_9395379 chr3L - chr3L_9394707_9395379 chr3L_9394706_9394707;chr3L_9395379_9395380 chr3L_9394660_9394706;chr3L_9395380_9395409 14.06 13.21 24.32 13.73 16.67 23.08 11.22 18.75 22.37 5.56 17.39 10.79 13.79 23.40 14.89 16.51 16.67 20.00 20.00 13.33 16.00 11.76 22.81 12.00 12.20 22.86 21.05 8.33 10.53 15.56 18.87 12.12 17.14 16.04 14.58 9.80 13.33 9.09 15.69 13.70 6.25 16.19 12.20 16.67 9.09 17.39 10.71 7.27 12.28 14.75 14.71 18.75 6.12 4.88 14.06 10.87 12.68 9.52 N alternative_donor CG17233,RI_chr3L_20232898_20232962 chr3L - chr3L_20233633_20234944;chr3L_20233633_20234218;chr3L_20233633_20234418 chr3L_20233633_20234374 chr3L_20232963_20233632;chr3L_20234945_20234989 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 6.67 0.00 0.00 0.00 16.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 K intron_retention Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045275_16046104 chr3L_16045274_16045275;chr3L_16046104_16046105 chr3L_16045255_16045274;chr3L_16046105_16046204 37.89 40.00 33.33 37.50 26.67 28.57 41.46 37.84 34.55 NA 31.82 30.00 37.93 33.33 47.37 42.11 34.78 36.36 40.62 36.84 20.00 67.57 41.38 36.84 28.57 40.62 47.62 56.25 32.00 42.11 45.83 NA 51.72 40.00 35.71 61.29 33.33 58.33 35.71 37.04 30.77 39.13 39.13 47.83 NA 33.33 50.00 39.39 37.74 NA 45.00 40.00 60.00 NA 35.14 NA NA 33.33 K intron_retention spin,I_chr2R_12013288_12013847 chr2R + chr2R_12020141_12023531 chr2R_12020140_12020141;chr2R_12023531_12023532 chr2R_12020064_12020140;chr2R_12023532_12023630 63.64 NA NA 88.00 NA NA NA 90.91 92.86 NA NA 75.00 NA NA 87.50 100.00 NA NA NA 90.91 NA 40.00 69.23 46.67 46.15 NA 57.14 55.00 35.71 38.89 NA 70.00 57.14 NA NA 63.64 76.47 41.67 53.85 47.06 90.00 84.62 NA 76.92 NA 50.00 NA 63.16 72.73 43.75 40.00 NA NA NA 80.00 NA NA NA K intron_retention ade5,I_chrX_12653069_12653157 chrX - chrX_12653069_12653495 chrX_12653068_12653069;chrX_12653495_12653496 chrX_12652969_12653068;chrX_12653496_12653640 0.77 1.01 0.00 1.04 0.42 0.47 1.38 1.19 1.05 0.39 0.00 1.07 0.00 0.00 0.00 0.91 0.90 0.00 0.00 0.90 0.77 1.57 0.95 0.96 0.42 1.20 2.14 2.23 1.57 0.27 0.00 0.42 0.72 0.63 0.69 1.52 0.59 1.12 0.51 1.33 1.15 0.85 0.93 0.63 0.60 0.87 0.25 0.00 0.80 0.60 1.04 1.06 0.00 0.00 0.77 0.98 0.52 0.29 K intron_retention CG7837 chr3R - chr3R_25623499_25623563 chr3R_25623498_25623499;chr3R_25623563_25623564 chr3R_25623292_25623498;chr3R_25623564_25623902 0.00 0.00 0.00 4.44 0.00 NA 0.00 0.00 0.00 NA 0.00 2.56 10.00 4.55 0.00 3.33 0.00 0.00 0.00 0.00 0.00 18.52 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.88 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K jcn_only_AD CG17665 chr2R - chr2R_126662_129940 chr2R_126662_129593 chr2R_126199_126661;chr2R_129941_130204 96.00 NA 100.00 98.04 96.00 90.00 95.56 98.28 95.00 NA NA 95.24 92.86 100.00 94.12 97.06 97.50 NA 97.87 93.75 100.00 NA NA NA NA 100.00 NA NA NA NA 79.25 NA NA 96.61 NA NA NA NA NA NA NA 92.59 100.00 NA NA NA NA NA 95.06 NA NA NA NA NA 94.74 NA NA NA K intron_retention Tif-IA,RI_chr2L_22250854_22257652 chr2L + chr2L_22253333_22253421 chr2L_22253332_22253333;chr2L_22253421_22253422 chr2L_22253256_22253332;chr2L_22253422_22253685 91.57 92.59 91.49 93.18 94.92 89.19 84.04 94.06 90.23 88.24 90.32 90.37 95.05 93.33 92.04 94.74 93.58 90.14 94.12 89.38 88.71 89.09 95.39 95.76 94.37 93.10 93.51 95.18 91.43 94.03 82.47 87.27 95.24 90.28 86.60 90.22 94.20 92.22 88.24 91.41 90.36 90.37 91.09 92.39 88.37 87.39 94.32 85.94 90.64 90.82 92.40 91.49 94.44 91.57 92.65 91.84 94.21 93.55 K intron_retention Lasp,RI_chr3L_16674471_16704042 chr3L - chr3L_16687397_16704042 chr3L_16687396_16687397;chr3L_16704042_16704043 chr3L_16687302_16687396;chr3L_16704043_16704142 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.55 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG14939,RI_chr2L_11812683_11813150 chr2L - chr2L_11812683_11813724;chr2L_11812683_11813150 chr2L_11812683_11813633 chr2L_11812583_11812682;chr2L_11813725_11813792 0.00 4.35 2.17 0.00 0.00 3.33 1.96 1.72 0.88 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 2.27 1.12 0.00 6.67 0.00 8.33 10.00 0.00 0.00 9.09 6.25 0.00 0.00 5.00 0.00 1.27 NA 0.00 3.33 6.25 5.56 0.00 0.00 0.00 0.00 8.33 0.00 0.00 9.09 4.55 0.00 9.09 0.00 0.00 NA NA 2.38 NA 0.00 0.00 K intron_retention eIF-5A,I_chr2R_19945430_19946454,I_chr2R_19946177_19946252,I_chr2R_19946177_19946255,I_chr2R_19946177_19946454,E_chr2R_19946177_19946508,I_chr2R_19946186_19946252,I_chr2R_19946186_19946255,I_chr2R_19946186_19946454,I_chr2R_19946186_19946508,I_chr2R_19946299_19946454,I_chr2R_19946657_19946733,I_chr2R_19948517_19948682 chr2R + chr2R_19946215_19946454 chr2R_19946214_19946215;chr2R_19946454_19946455 chr2R_19946199_19946214;chr2R_19946455_19946554 0.09 0.09 0.00 0.09 0.00 0.06 0.10 0.08 0.10 0.00 0.11 0.08 0.21 0.29 0.13 0.08 0.04 0.00 0.11 0.10 0.00 0.08 0.07 0.17 0.00 0.10 0.29 0.27 0.12 0.11 0.09 0.07 0.09 0.00 0.07 0.07 0.15 0.00 0.24 0.14 0.08 0.12 0.10 0.17 0.13 0.22 0.09 0.00 0.11 0.00 0.19 0.00 0.00 0.00 0.11 0.08 0.15 0.16 K jcn_only_AD Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4833364_4834454;chrX_4833234_4834454;chrX_4833203_4834454;chrX_4833308_4834454 chrX_4833338_4834454 chrX_4834455_4834880;chrX_4833197_4833202 13.62 NA 4.55 5.41 23.81 NA 10.42 7.32 11.36 16.67 NA 5.56 15.38 17.65 NA 21.88 15.62 NA 22.50 11.76 NA 0.00 NA NA NA NA NA NA NA 16.13 20.83 NA 11.86 15.91 NA NA NA NA NA NA NA 2.70 27.27 NA NA NA NA 22.58 6.67 NA NA NA NA NA 4.76 NA NA NA K intron_retention CG17698 chr3L + chr3L_23741474_23741523 chr3L_23741473_23741474;chr3L_23741523_23741524 chr3L_23741240_23741473;chr3L_23741524_23741816 0.00 NA 0.00 9.76 NA 0.00 0.00 3.57 5.88 NA NA 0.00 0.00 8.00 0.00 7.14 0.00 0.00 3.23 3.33 NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA 3.64 0.00 NA NA NA NA 4.76 NA 9.76 0.00 NA NA 0.00 0.00 0.00 3.03 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 K intron_retention CG8176,I_chr3R_5348614_5348964 chr3R + chr3R_5349519_5349923 chr3R_5349518_5349519;chr3R_5349923_5349924 chr3R_5349450_5349518;chr3R_5349924_5350029 11.96 13.79 9.09 12.50 NA 11.11 12.50 13.16 14.06 NA 9.68 25.00 14.29 10.71 14.81 7.55 19.05 6.67 16.67 18.75 9.68 12.90 5.71 9.68 23.53 0.00 17.14 NA 12.50 10.53 18.18 0.00 5.00 17.07 0.00 8.00 6.67 5.56 16.67 29.27 NA 13.04 15.00 11.11 0.00 10.53 4.00 20.83 8.70 0.00 11.43 15.62 17.65 NA 15.15 0.00 14.29 8.33 K intron_retention CG42345,I_chr2R_1311745_1327074 chr2R + chr2R_1327260_1328114 chr2R_1327259_1327260;chr2R_1328114_1328115 chr2R_1327075_1327259;chr2R_1328115_1328154 0.00 0.00 0.00 0.98 0.00 0.00 2.38 0.00 0.74 0.00 0.00 1.72 0.00 0.00 0.00 2.56 0.00 0.00 0.00 1.08 0.00 0.00 1.22 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.41 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 1.33 K alternative_donor CG31716,I_chr2L_10397163_10398034,RI_chr2L_10397195_10398034,I_chr2L_10397648_10398034 chr2L + chr2L_10396922_10398034;chr2L_10396983_10398034 chr2L_10396850_10398034 chr2L_10398035_10398134;chr2L_10396810_10396849 0.00 5.00 0.00 0.00 0.00 0.00 2.08 1.75 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 4.35 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 14.29 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 7.14 0.00 11.11 0.00 0.00 0.00 4.55 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 12.50 0.00 0.00 0.00 0.00 N jcn_only_AA Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2629579_2629913;chr3L_2629613_2629913;chr3L_2629684_2629913;chr3L_2629527_2629913;chr3L_2629597_2629913 chr3L_2629585_2629913 chr3L_2629914_2629921;chr3L_2629427_2629526 8.89 10.99 12.38 10.18 9.91 11.64 16.22 6.36 12.21 15.87 18.41 10.44 16.20 11.25 9.29 11.39 13.11 6.20 9.59 11.00 14.63 2.78 7.29 7.34 5.56 8.89 10.20 7.55 7.28 7.38 9.22 12.07 6.64 10.51 10.29 7.55 8.86 3.78 9.62 8.41 7.23 10.37 11.22 8.30 6.70 5.53 7.95 11.37 8.72 6.62 6.33 7.87 5.94 5.96 10.12 7.11 2.96 4.60 K intron_retention CG12004 chr3L + chr3L_1572458_1572523 chr3L_1572457_1572458;chr3L_1572523_1572524 chr3L_1572292_1572457;chr3L_1572524_1572782 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 1.44 0.00 0.00 0.00 0.00 1.03 0.90 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG30381,RI_chr2R_3817895_3817951,RI_chr2R_3819348_3819403 chr2R - chr2R_3818106_3818164 chr2R_3818105_3818106;chr2R_3818164_3818165 chr2R_3817957_3818105;chr2R_3818165_3818297 0.00 0.00 NA 9.09 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA 9.09 NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 25.00 0.00 NA NA NA 0.00 NA NA 0.00 0.00 0.00 6.25 0.00 NA 0.00 0.00 0.00 0.00 K jcn_only_AD CG40191,I_chr2RHet_391475_391828,I_chr2RHet_392279_392824 chr2RHet + chr2RHet_391475_391803 chr2RHet_391479_391803 chr2RHet_391804_391926;chr2RHet_391375_391474 0.78 0.46 0.46 0.65 0.57 1.12 0.37 0.33 1.02 1.41 0.00 1.14 1.34 2.20 0.81 2.56 0.00 0.53 0.94 0.63 1.14 0.71 1.28 0.93 1.72 0.93 1.36 3.97 1.99 0.51 0.48 0.00 0.49 1.03 0.00 2.08 1.02 0.57 0.46 0.77 2.00 0.77 0.65 0.00 1.05 1.00 0.57 0.00 1.04 0.59 0.88 0.62 2.33 0.00 0.00 1.12 0.78 1.20 K jcn_only_AD CG42507,Trl,EI_chr3L_14750431_14750893,I_chr3L_14750431_14750985,CI_chr3L_14750431_14753667,I_chr3L_14754175_14754238 chr3L - chr3L_14750431_14750941;chr3L_14750431_14750762;chr3L_14750431_14751007;chr3L_14750431_14750583 chr3L_14750431_14750893 chr3L_14750331_14750430;chr3L_14751008_14751008 0.00 0.00 0.00 2.00 0.00 0.00 0.00 3.12 0.00 0.00 6.67 1.52 0.00 3.12 0.00 3.51 3.70 0.00 2.63 0.00 0.00 0.00 0.00 1.47 0.00 2.56 0.00 NA 0.00 0.00 2.70 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 1.18 0.00 3.51 4.29 0.00 1.35 4.55 0.00 2.00 0.00 0.00 0.00 2.56 N jcn_only_AA Moe,I_chrX_8774434_8791759 chrX - chrX_8774434_8785766 chrX_8785657_8785766 chrX_8785767_8785791 100.00 65.22 NA NA NA NA NA 100.00 81.67 NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA NA NA 100.00 NA 100.00 NA K alternative_acceptor I_chr3R_11826508_11826910,GATAe chr3R + chr3R_11844318_11844380 chr3R_11844318_11844378 chr3R_11843987_11844317;chr3R_11844381_11844611 100.00 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention CG11299,I_chr2R_19619053_19619186 chr2R + chr2R_19619744_19619915 chr2R_19619743_19619744;chr2R_19619915_19619916 chr2R_19619560_19619743;chr2R_19619916_19620026 0.00 7.27 6.06 6.56 7.69 0.00 0.00 0.00 4.27 0.00 0.00 2.70 0.00 7.89 6.52 0.00 0.00 0.00 2.08 1.77 0.00 0.00 2.60 0.00 0.00 0.00 6.82 0.00 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 6.56 3.45 0.00 0.00 0.00 5.41 5.41 0.00 0.00 1.32 0.00 0.00 2.60 3.70 1.75 3.12 0.00 0.00 4.76 0.00 2.50 0.00 K intron_retention CG7029 chr3R + chr3R_18614491_18615214 chr3R_18614490_18614491;chr3R_18615214_18615215 chr3R_18614301_18614490;chr3R_18615215_18617722 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 K jcn_only_AA I_chr2L_114992_156735,RI_chr2L_114992_155545,RI_chr2L_114992_155566,I_chr2L_114992_155637,I_chr2L_114992_156175,RI_chr2L_155430_155637,CG11455,CG3436 chr2L + chr2L_155430_155493;chr2L_155430_155637 chr2L_155430_155566 chr2L_155424_155429;chr2L_155638_155645 97.62 98.25 97.50 84.62 92.68 98.44 95.16 97.66 97.06 100.00 97.56 97.81 100.00 97.14 95.79 97.92 100.00 94.92 97.59 96.09 100.00 NA 94.23 92.59 100.00 97.37 96.97 96.30 96.15 100.00 98.67 97.67 96.67 99.07 100.00 NA 98.59 97.30 100.00 98.33 NA 97.71 94.44 94.29 94.44 98.36 92.31 100.00 96.92 100.00 97.22 100.00 100.00 97.14 98.81 100.00 96.84 98.77 K jcn_only_AA CG11148,F_chr4_876482_880932,I_chr4_880982_881065,I_chr4_882005_882418,RI_chr4_886921_887162 chr4 - chr4_880982_881065 chr4_881008_881065 chr4_881066_881165;chr4_880961_880981 99.41 98.51 100.00 99.41 100.00 100.00 98.69 99.47 98.67 100.00 100.00 98.84 100.00 100.00 98.26 100.00 100.00 97.75 98.40 98.49 100.00 100.00 98.82 100.00 100.00 100.00 97.37 100.00 98.36 100.00 97.66 98.78 98.53 98.47 98.08 97.78 98.67 98.61 98.67 100.00 100.00 99.50 100.00 100.00 100.00 98.95 100.00 100.00 99.52 98.54 100.00 98.70 100.00 98.72 99.16 96.63 99.32 99.32 K jcn_only_AA Glycogenin chr2R + chr2R_17088164_17098747 chr2R_17088164_17092117 chr2R_17088158_17088163 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA 95.65 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 NA NA NA 100.00 NA NA NA K intron_retention alc,I_chr2R_5023501_5023700 chr2R - chr2R_5023501_5024456 chr2R_5023500_5023501;chr2R_5024456_5024457 chr2R_5023401_5023500;chr2R_5024457_5025265 1.15 1.22 1.27 6.73 0.00 1.79 0.00 2.08 1.82 0.00 2.47 3.33 4.62 0.00 1.98 2.33 0.00 5.48 1.47 2.08 2.50 1.79 0.00 0.00 0.00 0.00 3.80 3.57 2.22 0.00 0.00 1.80 0.00 1.03 0.00 2.78 0.00 0.00 1.01 1.38 0.88 0.00 0.00 0.00 0.00 1.90 1.15 1.42 1.38 1.49 0.00 0.00 0.00 0.00 1.12 1.15 1.72 0.50 K intron_retention loco,I_chr3R_18448629_18449211,I_chr3R_18456329_18462522 chr3R - chr3R_18446578_18446644 chr3R_18446577_18446578;chr3R_18446644_18446645 chr3R_18446509_18446577;chr3R_18446645_18446737 0.00 0.00 0.00 0.00 0.00 0.00 2.67 1.37 2.13 0.00 0.00 2.06 0.00 5.26 0.00 1.92 0.00 0.00 0.00 1.16 0.00 0.61 3.95 2.78 0.00 0.00 2.67 5.75 2.41 0.00 0.00 0.00 0.00 2.70 0.00 5.45 2.60 0.00 0.00 0.88 3.17 2.20 0.00 2.90 0.86 1.43 3.77 0.00 3.61 1.61 2.00 0.00 0.00 2.22 0.00 0.00 0.00 3.61 K jcn_only_AD CG32016,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_978516_978914;chr4_978516_978612 chr4_978516_978631 chr4_978478_978515;chr4_978915_978920 100.00 NA 97.30 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.31 NA NA 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA 100.00 NA 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K jcn_only_AD Rpb8 chr3L + chr3L_21722217_21722287 chr3L_21722224_21722287 chr3L_21722288_21722991;chr3L_21721921_21722216 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 NA 0.00 1.47 0.00 2.13 0.00 4.65 0.00 0.00 0.00 1.16 0.00 0.00 2.56 0.00 0.00 2.56 0.00 NA NA NA 0.00 NA NA 1.49 3.33 0.00 0.00 0.00 0.00 0.00 NA 1.03 0.00 0.00 4.35 2.56 2.63 NA 0.00 0.00 6.52 0.00 0.00 5.26 3.12 0.00 2.47 2.63 K intron_retention La chr2L - chr2L_20348536_20348703 chr2L_20348535_20348536;chr2L_20348703_20348704 chr2L_20348393_20348535;chr2L_20348704_20348878 97.75 97.52 96.97 99.59 100.00 99.03 99.13 97.99 99.60 98.35 100.00 98.91 98.25 98.18 98.02 98.80 98.85 98.88 96.80 98.04 96.39 94.64 97.16 98.13 97.39 98.99 97.08 96.39 98.11 96.10 98.11 97.69 96.44 98.35 97.56 98.95 95.38 97.42 99.41 98.32 96.73 98.12 96.00 96.46 96.31 94.57 94.17 96.57 98.82 97.14 97.75 97.18 98.05 97.27 98.29 97.14 97.69 96.17 K jcn_only_AA CG31731,I_chr2L_13786850_13786922 chr2L + chr2L_13784595_13784785 chr2L_13784595_13784756 chr2L_13784471_13784594;chr2L_13784786_13784986 0.00 0.00 0.00 11.84 2.00 0.00 5.45 0.93 0.00 4.17 0.00 2.41 2.27 0.00 0.00 0.00 0.00 0.00 0.00 2.22 2.44 2.50 2.86 0.00 9.09 6.12 0.00 3.85 0.00 0.00 2.67 NA NA 2.15 0.00 2.70 0.00 0.00 3.28 0.00 NA 0.00 0.00 0.00 NA 4.00 NA 0.00 0.88 NA 1.75 0.00 NA NA 1.45 0.00 4.35 NA K intron_retention Keap1 chr3R - chr3R_12902616_12903539 chr3R_12902615_12902616;chr3R_12903539_12903540 chr3R_12902299_12902615;chr3R_12903540_12903653 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.26 0.00 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 6.25 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA K cassette E_chr3R_7821802_7831079,Ect3 chr3R + chr3R_7825162_7826930 chr3R_7825162_7825486;chr3R_7825598_7826930 chr3R_7825487_7825597 chr3R_7825014_7825161;chr3R_7826931_7827152 5.41 8.33 5.71 5.56 NA 3.45 5.00 1.72 7.84 6.25 21.05 2.38 5.26 2.70 0.00 1.37 4.00 32.00 6.25 4.05 19.05 6.06 5.06 3.28 7.69 2.78 7.02 6.38 11.48 6.67 3.45 6.67 9.30 6.00 3.85 3.57 7.69 7.69 1.79 6.35 3.70 4.84 0.00 6.06 4.35 4.44 8.33 5.88 5.66 9.26 2.00 10.34 2.44 4.17 0.00 9.09 2.56 1.96 K jcn_only_AD Top2,I_chr2L_19452310_19453250,I_chr2L_19452316_19452538,I_chr2L_19452794_19453250 chr2L - chr2L_19452316_19453250 chr2L_19452316_19452538 chr2L_19452216_19452315;chr2L_19453251_19453350 0.47 0.79 0.55 0.00 0.64 0.00 0.47 0.82 0.00 0.00 0.00 0.35 0.00 0.00 0.52 0.00 0.00 1.65 0.61 0.00 0.00 2.50 0.00 0.00 0.82 0.00 1.18 0.00 1.67 0.97 2.94 0.00 1.60 0.00 0.00 0.00 0.64 1.75 0.52 0.52 0.00 0.00 0.71 0.00 2.70 1.59 1.41 2.02 1.10 1.59 0.50 0.00 0.00 0.00 0.51 1.23 0.00 0.00 K intron_retention CG18596,I_chr3R_18203637_18203690,I_chr3R_18209085_18209133 chr3R + chr3R_18203877_18203938 chr3R_18203876_18203877;chr3R_18203938_18203939 chr3R_18203691_18203876;chr3R_18203939_18204502 2.63 0.00 0.00 7.14 NA 0.00 0.00 14.29 7.69 0.00 0.00 2.38 11.54 0.00 0.00 8.00 0.00 0.00 3.85 7.69 0.00 5.45 6.06 8.70 7.41 0.00 8.57 5.26 19.05 0.00 6.25 0.00 10.81 5.00 0.00 2.70 0.00 0.00 8.33 7.84 0.00 6.12 NA 2.56 19.05 3.85 0.00 6.90 2.78 0.00 9.68 0.00 NA 0.00 6.25 0.00 0.00 0.00 K intron_retention CG32627,CG32628 chrX + chrX_13608769_13608856 chrX_13608768_13608769;chrX_13608856_13608857 chrX_13608710_13608768;chrX_13608857_13608992 100.00 NA NA NA NA NA 93.33 NA 100.00 NA NA 90.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention ald chr3R + chr3R_13499199_13499298 chr3R_13499198_13499199;chr3R_13499298_13499299 chr3R_13498643_13499198;chr3R_13499299_13499550 3.25 0.00 0.00 14.81 4.55 5.26 0.00 10.00 9.76 NA NA 5.88 0.00 0.00 3.85 5.00 0.00 5.56 0.00 3.28 4.35 6.67 4.44 5.41 0.00 0.00 3.23 4.17 7.41 0.00 0.00 0.00 0.00 2.70 0.00 3.33 4.76 0.00 0.00 4.55 0.00 0.00 NA 4.00 7.69 5.00 0.00 0.00 0.00 7.27 4.26 0.00 3.85 2.78 4.76 0.00 4.44 0.00 K intron_retention cenB1A chr3R + chr3R_18949110_18949164 chr3R_18949109_18949110;chr3R_18949164_18949165 chr3R_18947955_18949109;chr3R_18949165_18949936 0.00 0.00 0.78 0.51 0.00 0.00 0.50 0.42 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 2.33 0.00 0.00 1.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 1.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17698 chr3L + chr3L_23731285_23733260 chr3L_23731284_23731285;chr3L_23733260_23733261 chr3L_23731166_23731284;chr3L_23733261_23733289 26.04 NA NA 18.75 NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor noncoding_18164,F_chr3R_17192061_17200781,RI_chr3R_17193489_17193631 chr3R + chr3R_17193416_17193631;chr3R_17193489_17193631 chr3R_17193407_17193631 chr3R_17193632_17193731;chr3R_17193389_17193406 14.29 25.00 23.53 25.93 14.29 14.29 29.17 19.05 20.00 NA NA 19.23 14.29 13.33 25.00 13.04 14.29 10.00 21.43 14.81 27.27 NA 10.00 30.00 NA 7.69 12.50 14.29 14.29 NA 24.56 0.00 0.00 19.05 20.00 40.00 0.00 28.57 9.09 32.00 7.69 7.69 8.33 23.08 5.56 12.50 9.09 5.00 3.85 11.11 14.29 11.11 14.29 10.00 13.33 6.25 25.00 0.00 K intron_retention Ucp4A chrX + chrX_17739792_17740715 chrX_17739791_17739792;chrX_17740715_17740716 chrX_17739615_17739791;chrX_17740716_17740825 11.11 10.53 10.53 9.52 NA 7.69 7.69 11.76 15.00 NA 9.09 8.33 NA NA 9.09 11.76 6.25 14.29 27.27 15.15 16.67 26.32 14.29 0.00 11.76 NA 17.65 NA 20.00 9.52 15.79 11.76 7.41 14.81 22.22 NA 10.81 13.04 3.85 13.04 11.76 11.11 NA 7.41 9.68 3.70 0.00 17.65 10.34 0.00 16.67 NA 11.11 0.00 NA 9.09 15.38 15.00 K jcn_only_AA CG6701,RI_chr2R_9866395_9866446,RI_chr2R_9866896_9867532 chr2R - chr2R_9866395_9866446;chr2R_9865335_9866446 chr2R_9865355_9866446 chr2R_9866447_9866546;chr2R_9865150_9865334 99.30 99.31 100.00 99.28 100.00 99.45 98.08 99.41 99.52 97.87 98.70 99.04 97.93 99.47 98.62 100.00 99.39 99.46 99.51 99.71 98.63 99.38 100.00 99.32 98.99 99.55 97.35 100.00 99.27 99.30 95.81 95.83 98.05 99.65 97.80 100.00 98.88 97.58 100.00 98.55 100.00 98.96 98.73 99.43 93.22 98.72 100.00 98.37 100.00 98.18 97.73 100.00 100.00 100.00 99.13 98.25 100.00 99.01 K multi_cassette vap,RI_chrX_15897976_15899352,I_chrX_15897976_15899654,I_chrX_15898011_15899654,I_chrX_15898427_15899017,RI_chrX_15898427_15899654,RI_chrX_15899237_15899352,I_chrX_15899237_15899654 chrX - chrX_15898120_15899352 chrX_15898120_15898360;chrX_15898478_15899017;chrX_15899237_15899352 chrX_15898361_15898477;chrX_15899018_15899236 chrX_15897748_15898119;chrX_15899353_15899365 0.00 NA 0.00 NA NA NA 0.00 NA 7.14 NA NA 18.18 NA 0.00 NA 0.00 NA 0.00 0.00 18.18 NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA 0.00 14.29 NA NA NA NA NA 0.00 NA 4.35 0.00 NA NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA K intron_retention CG8270 chr3L + chr3L_6482514_6482569 chr3L_6482513_6482514;chr3L_6482569_6482570 chr3L_6482030_6482513;chr3L_6482570_6482962 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 8.00 13.33 NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA 6.67 NA K intron_retention Dif,I_chr2L_17414333_17414528,I_chr2L_17418395_17418487 chr2L - chr2L_17420114_17427655 chr2L_17420113_17420114;chr2L_17427655_17427656 chr2L_17420066_17420113;chr2L_17427656_17427991 0.00 0.00 NA 0.00 NA NA 3.45 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.85 NA NA 0.00 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 K alternative_donor CG3632,RI_chrX_16195880_16196242 chrX + chrX_16190824_16191682;chrX_16190917_16191682 chrX_16190941_16191682 chrX_16191683_16191751;chrX_16190763_16190823 50.00 50.00 54.55 38.46 40.00 37.50 63.16 50.00 69.57 NA 50.00 31.58 50.00 50.00 33.33 50.00 50.00 50.00 33.33 60.00 44.44 66.67 62.50 50.00 57.14 20.00 50.00 57.14 42.86 57.14 77.78 NA 40.00 42.11 42.86 50.00 28.57 37.50 50.00 42.86 NA 52.94 42.86 62.50 NA 71.43 75.00 66.67 45.00 33.33 45.45 37.50 40.00 NA 55.56 40.00 NA NA K intron_retention Cdep,I_chr3R_749200_749265 chr3R + chr3R_749200_749253 chr3R_749199_749200;chr3R_749253_749254 chr3R_749100_749199;chr3R_749254_749414 0.00 0.00 1.75 2.90 0.00 0.00 0.00 2.33 2.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 1.49 4.55 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor att-ORFA,att-ORFB,RI_chr3R_16380642_16382206 chr3R - chr3R_16380642_16383128 chr3R_16380642_16382206 chr3R_16380542_16380641;chr3R_16383129_16383136 12.00 13.33 10.53 13.64 7.69 10.00 14.29 7.69 14.71 4.76 5.56 19.05 20.00 15.38 13.33 16.67 18.18 14.29 23.08 13.89 4.76 16.67 9.52 9.09 18.18 15.38 13.33 16.67 13.04 10.00 10.53 15.00 11.76 12.00 11.76 21.05 9.52 12.50 3.57 7.32 4.76 22.22 15.38 7.14 4.17 9.09 4.17 12.00 18.18 12.50 8.33 7.69 0.00 7.14 12.50 12.50 5.00 4.08 K intron_retention I_chr2L_71805_74902,galectin,I_chr2L_72082_75077,RI_chr2L_72978_75077,RI_chr2L_73693_75077,RI_chr2L_74573_75077 chr2L + chr2L_73693_73819 chr2L_73692_73693;chr2L_73819_73820 chr2L_73593_73692;chr2L_73820_73849 50.00 NA NA 37.50 NA NA 47.83 76.47 47.06 NA 60.00 58.82 NA NA 58.33 NA NA 36.36 NA 37.93 69.23 NA NA 36.36 NA NA 69.23 60.00 NA NA 40.00 NA 50.00 52.94 NA 45.45 NA NA NA 50.00 NA 44.44 NA 28.57 NA NA NA 69.23 66.67 NA NA NA NA NA NA NA NA 33.33 K intron_retention Pect,I_chr2L_13207997_13208109,E_chr2L_13208285_13210076 chr2L + chr2L_13208778_13209492 chr2L_13208777_13208778;chr2L_13209492_13209493 chr2L_13208665_13208777;chr2L_13209493_13209499 78.57 84.38 73.08 89.77 69.05 74.47 91.07 81.82 80.00 85.19 84.62 71.72 35.45 67.74 69.64 78.82 75.00 70.73 81.13 71.85 80.00 59.32 75.56 76.00 80.00 84.44 84.21 73.58 83.33 66.07 76.60 72.41 68.18 81.01 62.96 89.47 77.42 80.00 79.66 81.25 79.07 78.95 78.57 80.95 78.12 66.67 81.48 62.16 85.06 81.13 74.12 75.47 92.59 69.39 68.57 76.67 87.93 81.08 K intron_retention Syx4,I_chrX_2635555_2635621,I_chrX_2636831_2636971 chrX - chrX_2633579_2633742 chrX_2633578_2633579;chrX_2633742_2633743 chrX_2633330_2633578;chrX_2633743_2633794 6.67 14.29 NA NA NA NA NA 17.65 16.67 NA NA NA NA NA 6.67 NA NA NA 7.14 12.50 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 4.76 NA NA NA NA NA 0.00 NA 4.35 NA NA NA 0.00 NA NA 7.69 NA NA NA NA NA NA 6.67 NA 0.00 K intron_retention PRL-1,I_chr2L_16247385_16247503,I_chr2L_16250028_16250080 chr2L - chr2L_16247385_16247503 chr2L_16247384_16247385;chr2L_16247503_16247504 chr2L_16247285_16247384;chr2L_16247504_16247571 8.33 NA NA 11.11 NA NA NA 10.53 10.81 NA 6.06 15.00 22.22 NA 25.00 4.76 NA NA 7.69 12.50 8.33 0.00 0.00 5.56 NA NA NA NA NA NA 0.00 NA 0.00 3.03 NA 4.76 13.33 NA 6.67 9.09 NA 7.50 14.29 10.00 NA NA NA NA 22.73 12.50 NA NA 0.00 NA 14.29 NA 5.56 NA K alternative_donor CG2017 chr3R - chr3R_1686127_1687468;chr3R_1686127_1687891;chr3R_1686127_1688092 chr3R_1686127_1687510 chr3R_1685454_1686126;chr3R_1688093_1688097 16.67 20.51 17.39 13.33 8.11 29.41 13.04 11.86 16.85 18.42 21.95 12.35 18.92 10.26 16.67 16.33 9.38 18.60 16.67 17.89 29.55 24.71 21.25 10.94 16.00 11.76 13.92 10.00 16.46 19.35 15.73 13.16 19.67 20.63 21.43 13.21 13.41 22.58 16.42 18.75 18.75 15.85 18.75 16.92 23.40 18.64 23.91 26.92 12.86 13.79 17.19 11.32 10.53 15.22 10.20 10.91 8.57 25.00 K intron_retention fwd,I_chr3L_310787_310918,RI_chr3L_319514_319746 chr3L - chr3L_307457_307511 chr3L_307456_307457;chr3L_307511_307512 chr3L_307319_307456;chr3L_307512_307630 0.00 0.00 0.00 3.30 0.00 0.00 6.90 4.44 7.41 0.00 0.00 2.50 2.33 0.00 2.00 0.00 0.00 0.00 0.00 1.39 0.00 2.44 8.20 0.00 0.00 0.00 18.18 0.00 8.70 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 7.14 2.63 4.69 0.00 1.06 0.00 5.00 0.00 0.00 0.00 0.00 1.05 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Nedd4,I_chr3L_17534127_17534409,I_chr3L_17534504_17535990,I_chr3L_17535485_17536604,I_chr3L_17536186_17536604,I_chr3L_17536713_17536777,I_chr3L_17536813_17536863 chr3L + chr3L_17534504_17536604 chr3L_17534503_17534504;chr3L_17536604_17536605 chr3L_17534419_17534503;chr3L_17536605_17536704 0.00 0.00 0.00 0.98 1.41 0.00 3.97 0.61 0.84 0.00 1.35 1.46 2.60 0.00 1.06 2.07 1.41 2.25 0.00 1.14 0.00 1.75 1.05 2.44 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 K intron_retention CG4829,I_chrX_16717240_16717547 chrX + chrX_16717240_16717889 chrX_16717239_16717240;chrX_16717889_16717890 chrX_16717140_16717239;chrX_16717890_16718151 97.36 96.28 97.26 99.77 66.09 59.10 94.78 98.58 97.35 86.93 98.31 93.95 97.45 97.35 95.39 99.15 98.58 95.52 97.75 95.99 95.95 100.00 95.92 95.08 95.03 99.60 91.06 84.00 99.39 99.61 97.44 99.62 99.12 98.90 96.63 100.00 96.76 96.45 97.36 94.39 97.48 98.73 98.25 98.19 98.95 96.36 96.40 98.55 97.00 93.66 94.72 97.70 98.48 97.70 98.82 96.35 98.39 99.22 K alternative_acceptor lds,I_chr3R_3748184_3748242 chr3R + chr3R_3748184_3748268 chr3R_3748184_3748242 chr3R_3748084_3748183;chr3R_3748269_3748342 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 2.73 0.00 0.00 0.00 0.00 0.00 0.00 1.02 2.38 0.00 0.00 0.00 0.00 1.54 0.00 2.06 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 2.67 K alternative_acceptor CG2219,noncoding_20558,RI_chr4_202143_202194 chr4 - chr4_202136_202194 chr4_202143_202194 chr4_202195_202294;chr4_202043_202135 66.29 65.38 72.73 67.86 47.62 70.83 63.89 67.24 64.04 75.00 60.71 70.37 69.57 74.19 65.38 71.43 54.84 66.67 66.67 72.92 76.19 80.00 81.25 69.23 57.14 NA 68.18 70.00 66.67 63.64 59.09 63.64 56.67 64.18 65.91 61.54 58.33 61.54 64.00 64.18 71.88 65.31 69.23 73.68 71.43 65.06 68.97 64.71 63.16 70.00 70.00 61.54 67.44 64.81 50.00 63.83 68.97 64.95 K alternative_acceptor CG9086,CEI_chrX_16859981_16861527,I_chrX_16861895_16862053 chrX - chrX_16857754_16861527 chrX_16859981_16861527 chrX_16861528_16861627;chrX_16857742_16857753 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA K intron_retention bif,I_chrX_11581793_11583233,REI_chrX_11585551_11586831 chrX + chrX_11583577_11587579 chrX_11583576_11583577;chrX_11587579_11587580 chrX_11583234_11583576;chrX_11587580_11588761 1.82 3.12 2.60 0.00 6.15 2.35 4.84 0.00 3.41 0.00 0.00 3.40 6.06 0.00 5.49 4.69 4.17 0.00 0.00 2.73 4.62 2.16 2.47 0.00 3.03 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.72 5.77 0.00 0.00 2.92 0.00 2.24 2.42 0.00 3.82 1.82 2.90 0.00 1.60 1.03 0.31 2.01 0.00 1.37 2.04 2.67 0.00 1.32 2.27 2.35 0.00 K intron_retention CG13917 chr3L + chr3L_1599915_1599978 chr3L_1599914_1599915;chr3L_1599978_1599979 chr3L_1599515_1599914;chr3L_1599979_1600320 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 10.00 NA NA NA NA NA NA NA NA 0.00 K jcn_only_AA mura,RI_chr3R_5373093_5377292,I_chr3R_5375533_5376618,RI_chr3R_5380786_5380850 chr3R - chr3R_5367732_5372519 chr3R_5368647_5372519 chr3R_5372520_5372875;chr3R_5367401_5367731 48.36 NA NA 53.85 NA NA NA 43.48 38.10 37.50 NA NA NA NA NA 52.00 NA NA NA 45.00 NA 62.07 NA NA NA NA NA NA 48.15 NA NA NA 74.07 NA NA 54.17 NA NA NA NA NA 34.48 NA 48.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA Nipped-B,I_chr2R_580301_580515,I_chr2R_580453_580515,I_chr2R_580989_582555,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_580453_580515 chr2R_580456_580515 chr2R_580516_580582;chr2R_580368_580452 100.00 97.44 100.00 97.94 100.00 100.00 98.69 98.68 100.00 100.00 100.00 99.11 100.00 98.57 96.55 99.07 98.39 100.00 98.75 98.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 97.10 98.20 99.03 100.00 99.17 100.00 100.00 100.00 NA NA 97.18 100.00 98.35 100.00 98.33 100.00 98.95 100.00 100.00 98.45 100.00 98.51 100.00 100.00 100.00 100.00 96.43 100.00 99.30 K intron_retention ATPsyn-d chr3R + chr3R_14920797_14921118 chr3R_14920796_14920797;chr3R_14921118_14921119 chr3R_14920714_14920796;chr3R_14921119_14921792 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.52 0.00 2.13 0.00 0.00 6.12 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention rok,RI_chrX_16526333_16526477 chrX - chrX_16521501_16521628 chrX_16521500_16521501;chrX_16521628_16521629 chrX_16521334_16521500;chrX_16521629_16521903 23.29 24.53 29.03 23.91 18.42 23.26 45.95 28.85 23.75 16.67 22.73 25.64 28.57 30.00 33.33 24.32 24.14 35.48 23.08 27.16 31.25 30.14 13.04 17.50 25.00 30.56 19.74 21.88 30.77 15.69 28.57 30.77 17.39 19.64 30.30 55.56 17.52 20.51 20.45 12.31 12.00 23.29 34.48 18.33 11.54 23.08 12.00 10.71 28.17 18.18 18.92 24.07 21.21 16.22 37.50 16.33 16.67 26.32 K intron_retention mrj,I_chr2R_12093585_12095708,I_chr2R_12093585_12096954,I_chr2R_12093585_12097211,I_chr2R_12093585_12097256,I_chr2R_12093585_12097522,I_chr2R_12093733_12097526,RI_chr2R_12093733_12108627,tRNA:CR30237,tRNA:CR30238,I_chr2R_12108655_12109044,I_chr2R_12108697_12109174 chr2R - chr2R_12093733_12097694 chr2R_12093732_12093733;chr2R_12097694_12097695 chr2R_12093706_12093732;chr2R_12097695_12097877 36.36 NA NA 16.67 NA NA 41.67 28.57 37.04 NA NA 30.77 33.33 40.00 15.38 38.89 47.06 NA 36.36 31.58 NA NA 63.64 NA NA 36.36 50.00 77.78 NA NA 21.43 NA NA 26.09 NA 50.00 NA NA NA NA NA 39.13 NA NA NA NA NA NA 25.00 NA NA NA NA NA 33.33 NA NA NA K jcn_only_AD CG3558,RI_chr2L_2995071_2997790 chr2L + chr2L_2993410_2993544;chr2L_2993444_2993544;chr2L_2993378_2993544 chr2L_2993464_2993544 chr2L_2993545_2994408;chr2L_2993028_2993377 0.84 0.00 1.41 1.85 0.00 0.00 1.45 0.00 0.64 0.00 0.00 0.91 0.00 0.00 0.00 0.80 0.00 0.00 3.45 0.76 0.00 3.53 3.08 3.70 3.03 5.13 2.17 3.45 15.04 1.08 1.49 0.00 0.88 0.67 5.26 1.82 2.33 0.00 2.22 1.52 0.00 0.00 0.00 1.15 0.00 1.87 0.00 2.81 1.48 2.63 0.00 0.00 0.00 NA 2.50 0.00 2.78 0.00 K jcn_only_AD RpL15 chr3LHet + chr3LHet_2398018_2398127;chr3LHet_2397925_2398127;chr3LHet_2397992_2398127;chr3LHet_2398060_2398127;chr3LHet_2397841_2398127;chr3LHet_2398002_2398127;chr3LHet_2397820_2398127;chr3LHet_2398053_2398127 chr3LHet_2397859_2398127 chr3LHet_2398128_2398454;chr3LHet_2397802_2397819 3.85 5.41 9.72 1.34 3.12 4.35 15.38 2.42 18.31 3.12 5.71 14.04 21.43 15.62 4.62 11.76 1.75 5.45 5.15 6.67 10.26 0.58 0.00 4.35 4.55 6.38 0.00 1.29 1.32 1.79 1.56 1.24 0.68 0.86 0.00 2.33 4.00 NA 8.70 0.21 1.10 4.44 3.37 0.00 1.39 3.32 9.09 0.96 4.90 3.70 7.69 17.39 0.24 0.00 6.84 6.25 7.14 0.96 K intron_retention CG6412 chr2L - chr2L_17500284_17500491 chr2L_17500283_17500284;chr2L_17500491_17500492 chr2L_17500035_17500283;chr2L_17500492_17500981 3.85 3.57 6.38 8.06 0.00 6.52 0.00 9.80 8.22 2.56 0.00 3.26 6.06 2.50 4.44 3.57 6.67 5.00 2.56 4.00 0.00 4.35 2.78 8.57 6.82 0.00 3.33 0.00 4.84 4.35 7.41 0.00 0.00 2.78 4.08 6.00 3.61 4.08 2.88 2.00 0.00 4.30 0.00 7.27 0.00 1.06 7.14 2.78 7.69 3.85 5.06 3.23 4.40 3.95 9.52 5.26 0.73 0.00 K intron_retention CG1309 chr3L + chr3L_4260058_4260108 chr3L_4260057_4260058;chr3L_4260108_4260109 chr3L_4259744_4260057;chr3L_4260109_4260260 0.00 8.33 0.00 0.00 0.00 0.00 0.00 5.26 2.27 NA 0.00 5.88 0.00 10.71 0.00 0.00 0.00 0.00 0.00 6.56 4.76 5.26 0.00 4.08 0.00 4.00 5.77 4.44 0.00 0.00 0.00 0.00 3.70 2.27 0.00 2.56 5.41 0.00 0.00 6.82 0.00 1.59 0.00 0.00 0.00 0.00 0.00 6.25 4.65 0.00 0.00 0.00 3.23 0.00 10.34 6.67 6.38 3.77 K intron_retention CG15097,I_chr2R_14712075_14712152,I_chr2R_14713403_14713523 chr2R - chr2R_14712306_14713001 chr2R_14712305_14712306;chr2R_14713001_14713002 chr2R_14712209_14712305;chr2R_14713002_14713185 14.32 NA NA 15.38 NA NA 20.00 13.33 6.67 NA NA 25.00 NA NA NA NA NA NA NA 15.00 NA 21.43 NA 20.00 11.11 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 10.53 NA NA 5.26 NA 13.64 NA NA NA NA 26.67 NA NA NA NA NA NA NA NA NA K cassette syd,I_chr3L_7924891_7925400 chr3L - chr3L_7919938_7920859 chr3L_7919938_7920587;chr3L_7920680_7920859 chr3L_7920588_7920679 chr3L_7919673_7919937;chr3L_7920860_7920920 5.00 NA NA NA NA NA NA 0.00 4.17 NA NA 11.76 6.67 NA NA NA 6.67 NA NA 3.23 NA 8.33 16.67 5.88 NA NA 0.00 NA 4.35 NA 4.35 8.33 NA 4.76 15.38 11.76 4.17 NA NA NA 6.25 4.35 NA 6.25 6.25 5.00 5.56 3.85 4.76 5.00 4.35 NA NA NA NA 10.53 NA 4.76 K intron_retention RI_chr3L_21188731_21188785,CG33054 chr3L - chr3L_21190591_21190648 chr3L_21190590_21190591;chr3L_21190648_21190649 chr3L_21190582_21190590;chr3L_21190649_21190737 100.00 100.00 100.00 100.00 NA 100.00 100.00 86.36 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG3919 chr3L + chr3L_14405237_14405355 chr3L_14405285_14405355 chr3L_14405356_14405772;chr3L_14405135_14405236 4.55 NA NA 3.23 NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA 8.57 NA 0.00 NA NA NA NA NA NA 47.83 NA NA NA 4.17 8.70 NA NA NA NA 10.00 4.55 NA 10.34 NA NA NA NA NA 12.00 NA NA 13.04 NA 4.00 NA NA NA NA 4.48 K mutually_exclusive spz chr3R - chr3R_22892388_22892450,chr3R_22892607_22894865;chr3R_22892388_22892843,chr3R_22892922_22894865 chr3R_22892388_22893079,chr3R_22893218_22894865 chr3R_22892451_22892606;chr3R_22892844_22892921 chr3R_22893080_22893217 chr3R_22892330_22892387;chr3R_22894866_22895053 0.00 0.00 0.00 1.74 1.89 0.00 0.00 0.00 1.80 2.94 5.36 0.00 0.00 0.00 2.33 2.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.17 0.00 3.85 0.00 0.00 0.00 1.19 2.94 0.00 0.00 1.45 7.14 1.28 2.78 0.00 1.42 3.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 K jcn_only_AD path,I_chr3L_9492315_9494012,noncoding_11668 chr3L - chr3L_9490312_9492121 chr3L_9490312_9490393 chr3L_9490216_9490311 22.52 8.57 38.98 32.81 34.09 32.43 37.04 26.25 20.69 35.71 36.00 36.17 62.00 37.14 22.22 4.17 36.73 18.75 28.30 38.00 41.67 21.74 20.75 14.04 17.86 37.50 21.31 NA 30.00 NA 27.40 13.04 23.68 31.25 11.54 23.81 21.74 14.29 8.51 18.87 10.81 26.42 26.19 4.17 NA 13.46 NA 15.62 22.83 6.45 22.22 6.06 NA 27.27 39.06 14.81 10.00 9.09 K jcn_only_AA fra chr2R + chr2R_8445281_8445949;chr2R_8445281_8446375 chr2R_8445281_8445922 chr2R_8445263_8445280;chr2R_8446376_8446583 75.72 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 71.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA 83.33 NA 36.36 NA NA NA NA NA NA NA K intron_retention gish chr3R + chr3R_12100604_12100675 chr3R_12100603_12100604;chr3R_12100675_12100676 chr3R_12100535_12100603;chr3R_12100676_12100891 93.94 94.35 93.94 92.41 93.83 96.04 93.90 94.54 92.83 84.27 96.51 93.20 91.30 93.40 96.85 95.65 93.75 95.79 92.38 93.27 95.45 96.85 95.57 94.52 97.25 99.04 95.65 94.44 96.58 89.55 91.43 96.15 91.74 94.58 93.70 95.20 95.39 93.86 96.13 89.11 95.00 96.08 93.83 90.65 84.21 88.19 95.60 90.91 93.30 95.18 96.11 88.76 89.23 94.12 96.97 91.95 90.41 85.83 K alternative_donor gw,RI_chr4_679135_679703,I_chr4_679135_680299,RI_chr4_679135_680693,I_chr4_679135_681047,I_chr4_679135_681671 chr4 - chr4_679135_680185;chr4_679135_680594;chr4_679135_680546;chr4_679135_680270 chr4_679135_680503 chr4_679035_679134;chr4_680595_680603 0.00 0.00 0.00 6.67 0.00 0.00 5.88 4.35 0.00 NA 0.00 7.14 14.29 11.11 0.00 5.26 0.00 25.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 5.56 0.00 0.00 0.00 0.00 NA 0.00 NA 7.69 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 16.67 NA NA NA K alternative_acceptor RpS18,CG8908,EI_chr2R_16151918_16151997,I_chr2R_16151918_16152036,I_chr2R_16151938_16152065,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16151938_16152065;chr2R_16151938_16151997;chr2R_16151938_16152006 chr2R_16151938_16152036 chr2R_16151852_16151937;chr2R_16152066_16152066 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.02 0.02 0.00 0.00 0.03 0.01 0.00 0.00 0.02 0.02 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.03 0.03 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.02 K jcn_only_AD CG8067,RI_chr2R_9871650_9871702 chr2R + chr2R_9871646_9871702 chr2R_9871650_9871702 chr2R_9871703_9871802;chr2R_9871550_9871645 11.88 16.67 7.41 5.45 3.85 NA 5.08 5.66 10.61 NA 8.82 8.89 16.67 20.00 15.79 2.86 NA 10.34 6.82 11.11 23.81 8.33 12.50 14.29 NA 15.38 14.29 16.67 NA 12.00 31.25 NA 4.55 7.69 NA 20.00 11.76 NA 12.50 5.56 NA 7.69 NA NA 8.00 12.00 16.67 NA 14.52 NA 14.71 18.18 NA NA 0.00 14.29 10.00 22.22 K intron_retention CG3732,E_chr2R_18528611_18528868 chr2R - chr2R_18527359_18527435 chr2R_18527358_18527359;chr2R_18527435_18527436 chr2R_18527042_18527358;chr2R_18527436_18527679 0.98 0.00 0.00 5.41 0.00 0.00 0.00 2.70 1.30 3.39 0.00 0.00 0.00 6.90 0.00 0.00 0.00 0.00 2.86 0.00 0.00 6.94 2.70 2.33 0.00 0.00 3.39 2.17 7.14 1.41 3.57 0.00 1.94 0.00 1.96 0.00 0.98 1.61 2.94 0.94 0.00 2.35 4.35 0.00 3.64 0.00 0.00 2.01 3.03 4.17 1.28 3.92 1.92 1.45 0.00 0.00 0.00 0.00 K alternative_acceptor Eb1,RI_chr2R_2640290_2642206,I_chr2R_2640494_2642206,I_chr2R_2641187_2642206,RI_chr2R_2641944_2642025,I_chr2R_2641954_2642206,I_chr2R_2642491_2642549 chr2R + chr2R_2641944_2642206 chr2R_2641944_2642025 chr2R_2641854_2641943;chr2R_2642207_2642306 1.47 0.78 1.53 1.50 1.13 1.08 2.48 1.88 1.48 0.62 1.78 1.94 2.22 2.38 1.13 1.25 2.08 1.07 1.38 1.24 1.47 4.34 1.02 1.21 1.78 1.52 2.95 4.01 1.31 1.43 1.84 1.70 1.66 1.27 1.73 1.72 1.45 1.53 1.94 2.15 1.90 1.40 1.34 2.35 1.27 1.41 0.86 1.01 1.85 2.30 1.39 1.80 0.22 1.04 1.42 1.44 0.64 0.77 N intron_retention Clic chrX - chrX_13708019_13715957 chrX_13708018_13708019;chrX_13715957_13715958 chrX_13707908_13708018;chrX_13715958_13716374 100.00 100.00 100.00 20.48 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 61.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K intron_retention CG6903 chrX + chrX_4813627_4813931 chrX_4813626_4813627;chrX_4813931_4813932 chrX_4813487_4813626;chrX_4813932_4814053 4.26 3.23 1.59 3.61 0.00 4.65 8.33 1.11 5.71 7.69 0.00 5.26 6.06 4.44 3.57 2.86 0.00 3.92 8.00 5.41 4.17 10.00 2.78 5.33 10.42 0.00 8.57 8.33 14.81 5.13 7.69 8.33 0.00 5.56 6.90 8.00 5.80 3.92 0.00 4.69 0.00 4.35 0.00 4.62 4.26 1.67 3.85 0.00 4.12 7.27 8.22 0.00 2.70 8.00 0.00 2.38 0.00 4.00 K alternative_acceptor I_chrX_15680663_15680821,Rhp chrX + chrX_15685936_15686020 chrX_15685936_15685987 chrX_15685495_15685935;chrX_15686021_15686177 0.00 0.00 NA 0.00 NA NA 0.00 0.00 3.12 NA NA 0.00 0.00 NA 0.00 NA NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 K intron_retention CG1578,I_chrX_11705375_11705673,I_chrX_11705375_11707320,RI_chrX_11709573_11710335,I_chrX_11710380_11710454 chrX - chrX_11705375_11707320 chrX_11705374_11705375;chrX_11707320_11707321 chrX_11705275_11705374;chrX_11707321_11707420 22.48 NA NA 0.00 NA NA NA NA 21.43 NA NA 23.53 30.77 NA NA NA NA NA NA 17.39 NA 13.64 NA NA NA NA 23.53 NA 25.00 25.00 NA NA NA NA NA NA 21.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Magi,I_chr2R_17020420_17029043,I_chr2R_17026738_17029359 chr2R - chr2R_17020168_17020232 chr2R_17020167_17020168;chr2R_17020232_17020233 chr2R_17018154_17020167;chr2R_17020233_17020419 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Mnt chrX + chrX_3587966_3592777;chrX_3587966_3592372;chrX_3587966_3592774 chrX_3587966_3592150 chrX_3587244_3587965;chrX_3592778_3593060 92.59 94.74 83.87 91.43 86.96 75.86 79.07 97.37 93.33 87.50 90.00 100.00 94.74 80.77 90.62 93.94 100.00 85.00 100.00 96.00 94.74 92.59 89.66 95.24 94.12 95.00 95.45 94.12 93.75 89.29 92.59 87.50 96.43 95.12 93.75 95.24 87.18 94.12 79.41 91.67 100.00 92.59 90.48 96.30 80.00 90.91 88.89 96.30 86.27 75.00 91.30 81.25 90.00 71.43 93.33 100.00 100.00 85.71 K intron_retention CG31688,I_chr2L_20432730_20436956 chr2L + chr2L_20429162_20431923 chr2L_20429161_20429162;chr2L_20431923_20431924 chr2L_20429027_20429161;chr2L_20431924_20432729 0.00 8.00 0.00 0.00 0.00 0.00 5.77 1.85 5.43 NA 0.00 1.61 0.00 5.13 0.00 5.88 6.67 6.45 4.65 0.00 0.00 0.00 0.00 0.00 NA 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 NA 0.00 1.32 NA 3.57 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K alternative_acceptor CG8272,RI_chr2R_4777288_4777363 chr2R - chr2R_4777288_4777363 chr2R_4777301_4777363 chr2R_4777364_4777463;chr2R_4777188_4777287 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 90.00 NA NA 87.50 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA 87.50 NA NA NA NA K intron_retention CG40191,I_chr2RHet_392279_392824 chr2RHet + chr2RHet_392686_392824 chr2RHet_392685_392686;chr2RHet_392824_392825 chr2RHet_391976_392685;chr2RHet_392825_392923 50.00 52.63 46.67 79.31 NA 23.53 63.64 52.38 65.00 75.00 63.64 51.22 42.86 38.46 30.77 50.94 46.67 23.08 32.00 34.62 NA NA 47.06 44.00 NA NA 17.39 NA NA NA 34.62 61.54 NA 54.05 45.83 NA NA 35.71 50.00 76.19 30.77 54.55 52.94 66.67 NA 31.82 40.00 72.73 43.48 55.00 50.00 59.09 42.86 39.13 52.63 50.00 40.00 76.92 K intron_retention Gyk,I_chr3L_203620_207231,I_chr3L_207277_208117 chr3L - chr3L_203620_205367 chr3L_203619_203620;chr3L_205367_205368 chr3L_203520_203619;chr3L_205368_205472 5.88 6.06 10.00 18.52 11.11 7.41 5.26 11.90 6.90 0.00 NA 10.20 11.76 5.00 19.35 13.89 11.11 16.67 15.38 7.78 0.00 7.41 2.27 5.88 7.41 8.57 6.67 NA 6.45 0.00 7.14 2.94 2.86 4.44 4.17 4.88 0.00 0.00 0.00 7.55 4.17 11.11 13.04 5.41 2.17 5.77 5.26 3.51 10.00 4.35 2.70 3.33 0.00 10.00 6.67 5.56 3.92 1.15 K intron_retention mRpL20,I_chr3L_13010705_13010775,RI_chr3L_13010729_13010775 chr3L - chr3L_13010713_13010775 chr3L_13010712_13010713;chr3L_13010775_13010776 chr3L_13010629_13010712;chr3L_13010776_13010875 0.00 0.00 2.08 3.23 0.00 0.00 0.00 4.44 3.28 0.00 0.00 0.00 3.70 0.00 2.13 2.70 0.00 1.72 0.00 1.68 0.00 NA 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 2.44 0.00 5.56 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.70 0.00 0.00 0.00 0.00 2.53 4.17 3.92 0.00 4.17 0.00 2.08 2.08 0.00 3.39 K intron_retention l(1)1Bi chrX + chrX_524243_524305 chrX_524242_524243;chrX_524305_524306 chrX_523859_524242;chrX_524306_524677 0.00 NA 0.00 NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA 15.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA 0.00 5.56 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA 0.00 0.00 K jcn_only_AD p53,CG17119,sav chr3R - chr3R_18878922_18879303 chr3R_18878922_18879078 chr3R_18878845_18878921;chr3R_18879304_18879498 100.00 NA NA NA NA NA NA NA 89.29 NA NA 100.00 NA NA NA 100.00 NA NA NA 97.22 NA NA 90.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA 88.89 NA NA NA NA NA NA 97.14 NA 100.00 NA NA NA NA NA 100.00 NA K intron_retention CPTI,I_chr2R_6358255_6358734,I_chr2R_6358255_6359122,RI_chr2R_6358779_6358944,I_chr2R_6360956_6365128 chr2R - chr2R_6358255_6358718 chr2R_6358254_6358255;chr2R_6358718_6358719 chr2R_6358234_6358254;chr2R_6358719_6358778 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Cdk4,RI_chr2R_12471503_12471656 chr2R + chr2R_12467202_12468346;chr2R_12467432_12468346;chr2R_12467275_12468346;chr2R_12467474_12468346;chr2R_12467225_12468346;chr2R_12467227_12468346;chr2R_12467261_12468346;chr2R_12467039_12468346 chr2R_12467241_12468346 chr2R_12468347_12468520;chr2R_12467030_12467038 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG31159 chr3R + chr3R_18441463_18441528 chr3R_18441463_18441523 chr3R_18440964_18441462;chr3R_18441529_18441737 60.00 NA NA 58.33 NA NA NA 66.67 70.59 NA NA NA NA NA NA 33.33 NA NA NA 75.00 NA 60.00 NA NA NA NA 77.78 NA NA NA 33.33 NA 75.00 60.00 NA NA NA NA NA 58.82 NA 75.00 NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA K cassette Gug,R_chr3L_8444636_8444874,I_chr3L_8455244_8456103 chr3L + chr3L_8455204_8456400 chr3L_8455204_8456135;chr3L_8456338_8456400 chr3L_8456136_8456337 chr3L_8455194_8455203;chr3L_8456401_8460667 95.80 90.00 100.00 94.29 76.92 91.67 100.00 100.00 96.67 100.00 88.89 86.21 91.67 91.67 90.91 95.45 93.33 85.71 93.33 100.00 92.31 88.89 91.67 94.44 88.89 90.91 100.00 NA 92.31 100.00 90.91 100.00 100.00 96.30 100.00 100.00 88.89 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 88.46 NA 93.75 100.00 83.33 85.71 94.74 100.00 NA 100.00 K intron_retention Tsp42Ef,I_chr2R_2912947_2914327 chr2R + chr2R_2912947_2914488 chr2R_2912946_2912947;chr2R_2914488_2914489 chr2R_2912847_2912946;chr2R_2914489_2914662 1.15 0.00 1.61 0.00 0.00 0.00 1.68 1.95 1.27 2.86 2.41 2.04 0.00 1.15 1.63 1.43 0.00 0.00 0.00 1.00 2.11 4.81 0.89 2.27 2.38 4.30 0.00 4.55 1.90 1.54 0.00 2.70 2.34 0.77 1.56 0.76 1.61 1.65 1.09 1.75 0.00 1.28 1.27 1.14 0.57 1.33 0.00 3.45 1.06 0.69 1.43 0.00 0.93 1.08 0.79 0.53 0.00 0.00 K alternative_donor pgant6 chr3L + chr3L_2782556_2782737;chr3L_2782414_2782737 chr3L_2782497_2782737 chr3L_2782738_2783472;chr3L_2782330_2782413 10.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention mip120,RI_chr2R_9394299_9395019,EfTuM chr2R + chr2R_9395164_9395219 chr2R_9395163_9395164;chr2R_9395219_9395220 chr2R_9395087_9395163;chr2R_9395220_9396130 9.30 9.30 10.87 28.99 11.63 12.20 13.64 16.22 7.29 7.78 14.29 10.31 8.33 11.63 16.28 11.94 7.27 7.58 13.64 13.21 11.54 2.30 10.71 6.67 25.37 8.77 25.68 31.21 7.94 2.14 9.90 9.46 2.49 15.66 5.75 9.41 7.69 8.16 9.09 6.34 18.28 7.38 8.89 5.56 3.79 4.88 7.95 6.56 15.22 11.11 11.76 8.64 3.70 9.52 14.86 5.61 4.64 4.62 K jcn_only_AD CG9267,noncoding_2949,RI_chr2L_13445398_13445475 chr2L - chr2L_13445398_13445479 chr2L_13445398_13445455 chr2L_13445298_13445397;chr2L_13445480_13445575 0.00 0.00 0.00 0.00 NA NA 0.00 2.44 0.00 NA NA 0.00 0.00 0.00 0.00 2.44 NA NA 4.00 1.89 NA 0.00 0.00 0.00 3.45 0.00 5.13 0.00 NA NA 7.50 NA NA 0.00 8.00 0.00 0.00 0.00 3.03 0.00 3.33 0.00 NA 0.00 NA 0.00 0.00 0.00 3.64 0.00 0.00 0.00 0.00 4.17 0.00 2.50 8.00 2.44 K mutually_exclusive ens,I_chr3L_4130719_4131120 chr3L - chr3L_4127163_4128613,chr3L_4128974_4131120;chr3L_4127163_4129650,chr3L_4129789_4131120 chr3L_4127163_4130388,chr3L_4130644_4131120 chr3L_4128614_4128973;chr3L_4129651_4129788 chr3L_4130389_4130643 chr3L_4126989_4127162;chr3L_4131121_4131220 1.20 1.61 2.08 1.32 0.00 0.00 1.79 1.45 0.89 0.00 1.85 1.16 0.00 2.33 1.92 3.23 2.08 0.00 0.00 1.10 2.27 0.92 1.02 1.39 1.67 0.00 1.39 0.00 0.00 1.54 1.59 2.86 1.22 2.53 1.75 2.74 0.87 1.22 0.00 0.89 0.00 0.90 2.44 1.20 0.00 1.85 0.00 1.16 1.18 0.00 1.14 1.67 0.00 0.00 1.89 1.85 0.00 2.22 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2392054 chrX_2387249_2387583;chrX_2387710_2388436;chrX_2388671_2389073;chrX_2389272_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2392054 chrX_2387584_2387709;chrX_2388437_2388670;chrX_2389074_2389271;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2392055_2392148 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA 66.67 NA NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA K alternative_acceptor Bsg25D chr2L - chr2L_5273555_5274018 chr2L_5273591_5274018 chr2L_5274019_5275763;chr2L_5273161_5273554 85.71 NA NA 88.89 NA NA NA 87.50 NA NA NA NA NA NA NA NA NA NA NA 91.67 NA NA 87.50 80.00 NA NA 66.67 NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA 85.71 NA 77.78 NA NA NA NA NA NA NA K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2392054 chrX_2387249_2388436;chrX_2388671_2389073;chrX_2389272_2389644;chrX_2389762_2392054 chrX_2388437_2388670;chrX_2389074_2389271;chrX_2389645_2389761 chrX_2387149_2387248;chrX_2392055_2392148 100.00 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA 66.67 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA K jcn_only_AD lok,I_chr2L_20063155_20063377,RI_chr2L_20063248_20063377 chr2L + chr2L_20063172_20063377 chr2L_20063248_20063377 chr2L_20063378_20063477;chr2L_20063148_20063171 1.85 5.43 3.64 9.68 1.75 3.85 0.00 0.00 1.65 1.61 9.09 0.89 1.59 3.17 3.45 1.59 1.96 2.44 1.33 4.05 1.85 0.00 1.98 2.90 0.00 1.64 1.11 3.23 5.00 2.70 2.74 1.08 0.00 4.44 1.96 1.18 0.98 2.50 1.90 1.41 1.01 1.71 2.08 2.94 1.18 0.75 2.00 0.64 3.67 4.00 2.17 0.00 2.13 0.00 1.41 1.47 1.85 1.64 K multi_cassette cno,I_chr3R_999718_999986,I_chr3R_999737_999777,RI_chr3R_1009937_1010000 chr3R - chr3R_1008608_1011090 chr3R_1008608_1009498;chr3R_1009706_1010000;chr3R_1010246_1010308;chr3R_1010364_1011090 chr3R_1009499_1009705;chr3R_1010001_1010245;chr3R_1010309_1010363 chr3R_1008441_1008607;chr3R_1011091_1011212 100.00 100.00 100.00 96.88 100.00 100.00 100.00 97.22 98.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 98.04 100.00 96.43 95.24 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.63 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 K intron_retention CG17646,E_chr2L_1749256_1749517 chr2L + chr2L_1742261_1743344 chr2L_1742260_1742261;chr2L_1743344_1743345 chr2L_1742246_1742260;chr2L_1743345_1743527 3.12 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Ras85D,I_chr3R_5338160_5338509,EI_chr3R_5338175_5338279,I_chr3R_5338175_5338299 chr3R - chr3R_5338175_5338279 chr3R_5338174_5338175;chr3R_5338279_5338280 chr3R_5338075_5338174;chr3R_5338280_5338337 47.06 NA NA NA NA NA NA 50.00 40.00 NA NA NA NA NA NA 50.00 NA NA NA 22.22 NA 47.06 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 31.58 NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD kay,E_chr3R_25616137_25617114 chr3R + chr3R_25615618_25617114;chr3R_25616533_25617114 chr3R_25616577_25617114 chr3R_25617115_25617214;chr3R_25615520_25615617 96.67 89.58 94.64 100.00 92.31 97.56 95.52 79.69 97.37 100.00 92.86 98.20 83.58 97.22 95.45 100.00 97.56 NA 86.11 98.20 96.67 90.91 100.00 93.88 97.96 95.00 97.87 97.56 95.77 100.00 93.55 NA 100.00 100.00 NA 98.90 100.00 100.00 100.00 96.30 NA 92.41 95.35 93.33 100.00 92.59 98.11 92.11 96.83 98.00 93.18 94.12 100.00 96.43 93.33 100.00 94.34 95.00 K intron_retention CG32685,CREI_chrX_9967445_9972518 chrX - chrX_9971402_9972518 chrX_9971401_9971402;chrX_9972518_9972519 chrX_9971342_9971401;chrX_9972519_9972618 25.00 NA NA 27.78 NA NA 78.57 25.00 19.05 NA NA 26.32 NA 25.00 20.00 NA NA NA 35.71 28.57 NA NA 35.71 NA NA 14.29 NA 36.36 NA 40.00 NA 12.50 0.00 27.27 NA NA NA NA 25.00 7.41 30.00 19.23 NA NA 0.00 4.00 NA 0.00 16.00 NA NA NA NA NA NA NA NA 8.33 K alternative_donor twin,RI_chr3R_20032242_20045321 chr3R - chr3R_20046286_20047530;chr3R_20046286_20047526 chr3R_20046286_20047514 chr3R_20046254_20046285;chr3R_20047531_20047647 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA 90.91 NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA NA NA NA 100.00 K intron_retention Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19564871_19564927 chr2R_19564870_19564871;chr2R_19564927_19564928 chr2R_19564772_19564870;chr2R_19564928_19565176 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG11030,I_chr2L_5725229_5757516,EI_chr2L_5725229_5802177 chr2L + chr2L_5725229_5758694 chr2L_5725229_5741469;chr2L_5741524_5758694 chr2L_5741470_5741523 chr2L_5725129_5725228;chr2L_5758695_5759362 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.88 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive babo chr2R + chr2R_4842357_4842463,chr2R_4842673_4846611;chr2R_4842357_4843217,chr2R_4843364_4846611 chr2R_4842357_4844533,chr2R_4844662_4846611 chr2R_4842464_4842672;chr2R_4843218_4843363 chr2R_4844534_4844661 chr2R_4842239_4842356;chr2R_4846612_4846839 42.48 27.27 55.00 37.50 30.00 54.55 63.41 46.15 42.86 33.33 28.57 46.88 25.00 41.18 42.86 37.50 73.33 45.45 50.00 30.77 40.00 71.43 42.86 42.86 53.33 46.67 39.13 NA 40.00 42.86 37.50 40.00 45.45 30.30 35.71 25.00 31.82 47.06 36.36 63.64 NA 37.14 46.67 39.13 83.33 50.00 37.50 33.33 42.86 50.00 39.13 33.33 57.14 NA 42.11 50.00 87.50 25.00 K jcn_only_AD CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_239517_240516;chr4_239517_239863 chr4_239517_240531 chr4_239079_239516;chr4_240532_240654 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 1.11 0.90 0.00 0.00 0.00 0.00 2.08 0.00 0.00 1.67 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG15771,F_chrX_5650884_5651894 chrX + chrX_5652381_5652437 chrX_5652380_5652381;chrX_5652437_5652438 chrX_5651895_5652380;chrX_5652438_5653784 0.00 0.00 0.00 0.00 1.15 1.39 0.00 0.00 0.44 0.00 0.00 0.73 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7458 chr3L + chr3L_21948331_21948413 chr3L_21948330_21948331;chr3L_21948413_21948414 chr3L_21948244_21948330;chr3L_21948414_21948649 100.00 NA NA NA NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA 100.00 NA 100.00 NA NA 91.67 90.91 NA NA 100.00 NA NA NA NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 88.89 93.33 NA 100.00 NA 100.00 91.67 100.00 100.00 K cassette RI_chr3L_19799338_19799408,Kap-alpha1 chr3L + chr3L_19801785_19802174 chr3L_19801785_19801843;chr3L_19802108_19802174 chr3L_19801844_19802107 chr3L_19801300_19801784;chr3L_19802175_19802674 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.27 100.00 100.00 98.59 100.00 100.00 100.00 100.00 100.00 97.56 100.00 99.03 100.00 98.84 98.80 100.00 100.00 100.00 100.00 100.00 95.45 98.04 100.00 100.00 100.00 100.00 100.00 100.00 98.94 100.00 100.00 100.00 100.00 98.84 100.00 100.00 100.00 100.00 100.00 97.78 100.00 100.00 98.57 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Pcd,RI_chr3R_25549090_25549159 chr3R + chr3R_25549079_25549159 chr3R_25549078_25549079;chr3R_25549159_25549160 chr3R_25548990_25549078;chr3R_25549160_25549259 2.15 1.52 0.00 5.41 2.56 0.00 3.28 0.00 2.15 0.00 0.00 2.90 0.00 0.00 5.77 2.27 0.00 2.86 2.86 0.00 3.57 0.00 2.78 2.74 0.00 5.26 7.89 4.55 0.00 2.17 2.33 0.00 1.85 3.39 5.56 0.00 1.32 0.00 1.59 0.00 0.00 4.94 0.00 1.72 3.57 0.00 0.00 2.94 5.06 2.44 2.56 0.00 0.00 2.94 0.00 2.70 2.27 2.94 K intron_retention RpS14a,I_chrX_7827880_7828041,F_chrX_7841357_7841447 chrX + chrX_7827808_7828041 chrX_7827807_7827808;chrX_7828041_7828042 chrX_7827780_7827807;chrX_7828042_7828141 0.29 0.36 0.06 0.12 0.20 0.07 0.45 0.10 0.21 0.27 0.18 0.18 0.08 0.24 0.09 0.29 0.20 0.09 0.09 0.10 0.07 0.47 2.13 0.67 0.82 0.13 4.67 2.64 2.20 0.99 0.29 0.51 0.30 0.12 0.75 3.20 0.29 1.96 0.75 0.78 0.16 0.10 0.08 0.90 0.06 0.63 0.90 0.44 0.27 1.53 4.04 0.55 0.27 3.57 0.11 0.54 0.68 0.18 K intron_retention CG5147 chr3L - chr3L_18101628_18101679 chr3L_18101627_18101628;chr3L_18101679_18101680 chr3L_18100845_18101627;chr3L_18101680_18101748 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 1.92 0.00 0.00 1.82 0.00 K alternative_acceptor prel chr2R + chr2R_5311772_5311836 chr2R_5311772_5311833 chr2R_5311616_5311771;chr2R_5311837_5311930 38.89 40.91 37.50 45.35 32.35 36.76 37.97 39.81 37.50 42.22 40.48 38.52 43.75 35.38 40.48 40.62 47.37 36.92 37.68 40.28 37.93 38.89 38.89 37.35 45.95 47.54 43.33 38.98 40.28 36.36 40.00 37.63 35.42 34.74 49.18 51.72 40.98 38.71 40.00 38.57 43.84 42.06 42.59 34.25 35.05 36.67 36.36 36.43 38.84 39.66 38.20 39.13 42.11 36.92 32.93 40.85 35.71 36.48 K intron_retention CG7530,eff chr3R - chr3R_10551112_10551178 chr3R_10551111_10551112;chr3R_10551178_10551179 chr3R_10550514_10551111;chr3R_10551179_10551652 0.00 0.00 0.00 1.18 0.00 0.00 1.32 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 4.04 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 1.11 1.73 3.70 1.04 0.00 1.43 0.00 0.72 0.00 0.83 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 K intron_retention penguin chrX - chrX_21218460_21218557 chrX_21218459_21218460;chrX_21218557_21218558 chrX_21217984_21218459;chrX_21218558_21218960 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 K alternative_donor eIF-1A,I_chr3R_14106104_14107415,I_chr3R_14106955_14107415 chr3R + chr3R_14106104_14107415;chr3R_14100864_14107415 chr3R_14106955_14107415 chr3R_14107416_14107515;chr3R_14100759_14100863 0.00 0.00 0.22 0.28 0.00 0.00 0.16 0.11 0.11 0.00 0.25 0.12 0.23 0.00 0.00 0.18 0.00 0.00 0.00 0.11 0.00 0.00 0.23 0.00 0.00 0.00 0.22 0.37 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CycG,I_chr3R_27427946_27436602,I_chr3R_27427953_27429034,I_chr3R_27427953_27431334,RE_chr3R_27427953_27436598 chr3R - chr3R_27427953_27429034 chr3R_27427952_27427953;chr3R_27429034_27429035 chr3R_27427853_27427952;chr3R_27429035_27429096 97.75 100.00 97.73 98.08 95.00 100.00 96.88 98.75 98.18 95.24 100.00 98.73 97.73 95.24 97.87 98.33 97.37 96.88 98.00 95.60 96.30 97.96 97.96 96.15 97.06 100.00 100.00 100.00 100.00 97.14 97.78 88.89 100.00 98.59 96.77 100.00 95.45 96.67 96.55 98.25 92.86 98.63 96.67 97.44 NA 95.83 94.12 91.30 95.06 95.45 97.87 100.00 100.00 100.00 98.04 95.45 96.55 100.00 K jcn_only_AA CG42258,I_chrX_12359522_12362282 chrX + chrX_12370302_12370369 chrX_12370302_12370351 chrX_12370186_12370301;chrX_12370370_12370989 1.64 2.17 3.85 0.00 3.45 0.00 1.75 0.00 1.94 4.17 0.00 4.84 0.00 NA 6.67 0.00 0.00 0.00 5.71 2.91 0.00 2.50 3.03 1.64 0.00 10.00 0.00 0.00 0.00 1.54 NA 2.78 1.79 0.00 0.00 2.78 0.00 1.41 0.00 1.77 2.70 1.14 4.76 4.11 3.64 0.00 0.00 2.86 3.12 2.38 0.00 0.00 1.67 0.00 0.00 1.64 0.00 2.35 N jcn_only_AA CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_261460_263113;chr4_261460_261555 chr4_261460_263086 chr4_261360_261459;chr4_263114_263305 87.69 NA NA 33.33 NA NA 90.48 95.12 87.69 NA NA 83.87 NA 100.00 NA 74.36 NA NA 88.89 90.48 NA NA NA NA NA NA NA NA NA NA 72.00 NA NA 87.88 NA NA NA NA NA 90.91 NA 82.93 NA NA NA NA NA NA 81.58 NA NA NA NA NA 70.83 NA NA NA K intron_retention Shawn_Tyler,MKP-4 chrX + chrX_19517582_19517647 chrX_19517581_19517582;chrX_19517647_19517648 chrX_19517450_19517581;chrX_19517648_19517747 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention SmD3,Cct5 chr2R + chr2R_8056701_8057229 chr2R_8056700_8056701;chr2R_8057229_8057230 chr2R_8056162_8056700;chr2R_8057230_8058070 0.51 0.00 2.44 2.88 1.28 0.00 0.00 1.39 1.45 0.00 0.00 2.99 5.66 0.00 0.00 4.44 0.00 2.50 0.00 2.76 1.52 1.23 0.00 0.40 0.00 0.00 2.70 2.10 1.89 0.00 0.00 0.00 0.91 2.38 0.00 1.27 1.18 0.00 0.44 1.29 0.51 4.00 1.61 1.27 0.30 0.00 0.89 0.00 1.64 1.13 0.00 0.00 0.55 0.98 0.00 0.00 0.00 0.00 K intron_retention Droj2,RI_chr3R_9207981_9208471,RI_chr3R_9208529_9209185 chr3R + chr3R_9207981_9209185 chr3R_9207980_9207981;chr3R_9209185_9209186 chr3R_9207926_9207980;chr3R_9209186_9209285 0.00 0.00 0.00 0.77 0.00 0.00 0.47 0.45 0.45 0.00 0.00 0.00 0.00 0.36 0.00 0.36 0.00 0.00 0.83 0.38 0.00 0.28 0.00 0.59 0.00 0.39 1.02 1.00 0.20 0.00 0.00 0.20 0.00 0.41 0.00 0.18 0.29 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.21 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3308,I_chr3R_17099005_17099062 chr3R - chr3R_17097816_17097876 chr3R_17097815_17097816;chr3R_17097876_17097877 chr3R_17096800_17097815;chr3R_17097877_17098158 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 K alternative_donor spt4,I_chr2R_8521473_8521540 chr2R + chr2R_8521473_8521540 chr2R_8521475_8521540 chr2R_8521541_8521640;chr2R_8521373_8521472 98.39 97.83 97.62 98.41 100.00 100.00 100.00 98.11 96.55 100.00 100.00 97.10 96.88 100.00 97.44 100.00 100.00 100.00 100.00 98.02 100.00 100.00 97.87 97.87 97.37 98.00 97.83 100.00 96.00 96.97 100.00 100.00 100.00 98.18 96.55 96.97 100.00 97.06 100.00 100.00 97.22 98.41 100.00 96.67 100.00 98.36 96.08 95.83 98.39 100.00 100.00 100.00 97.67 98.31 100.00 98.36 98.31 100.00 K intron_retention CG3328,I_chr2R_20051089_20053935 chr2R + chr2R_20060779_20060838 chr2R_20060778_20060779;chr2R_20060838_20060839 chr2R_20060559_20060778;chr2R_20060839_20061098 21.54 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 23.08 NA 41.67 NA NA NA NA NA NA NA NA NA NA 20.00 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Myb,RI_chrX_15752571_15753225 chrX - chrX_15751579_15751682 chrX_15751578_15751579;chrX_15751682_15751683 chrX_15749823_15751578;chrX_15751683_15751694 87.87 93.75 90.91 94.00 92.86 91.67 86.11 91.53 87.23 NA 73.33 89.80 88.24 81.48 95.00 86.00 85.00 95.24 97.30 87.50 71.43 91.67 81.82 92.86 90.00 95.45 88.89 90.00 94.74 66.67 80.65 57.14 64.29 89.58 83.33 100.00 64.29 91.67 91.67 86.67 86.67 84.44 84.62 90.91 73.33 77.78 NA 76.67 92.16 91.67 86.67 75.00 88.89 66.67 91.67 85.71 NA 81.82 K cassette CG3884 chr2R - chr2R_8838855_8839677 chr2R_8838855_8839350;chr2R_8839384_8839677 chr2R_8839351_8839383 chr2R_8837909_8838854;chr2R_8839678_8839836 12.37 10.00 14.68 12.75 10.75 14.81 6.38 12.78 10.05 14.29 14.46 18.38 9.72 16.47 16.28 14.79 12.22 13.51 10.98 13.22 19.28 4.05 9.63 14.68 12.31 7.46 11.19 9.30 10.26 11.11 13.79 19.75 21.88 10.45 8.86 9.09 13.33 14.74 14.29 9.15 11.43 13.47 12.20 9.29 21.52 12.12 13.59 21.92 12.37 8.89 11.59 17.65 8.82 9.28 12.73 14.02 10.50 22.22 K intron_retention CG31431 chr3R + chr3R_17697863_17698131 chr3R_17697862_17697863;chr3R_17698131_17698132 chr3R_17697704_17697862;chr3R_17698132_17698247 6.19 6.19 5.71 4.63 4.12 4.50 30.98 6.40 5.41 8.33 6.67 5.86 16.41 7.48 5.77 2.68 5.26 6.72 6.90 5.39 4.58 7.14 6.49 4.35 8.25 6.90 7.60 10.71 5.97 4.84 6.12 8.77 6.15 6.30 5.77 5.26 5.36 6.98 5.71 11.11 18.63 6.23 7.46 3.29 7.14 7.84 7.05 11.28 6.50 5.15 4.93 7.32 3.49 5.66 5.20 4.88 3.85 7.55 K alternative_donor oaf chr2L + chr2L_2495889_2496398 chr2L_2495927_2496398 chr2L_2496399_2497357;chr2L_2495570_2495888 0.00 0.00 5.88 0.00 NA NA NA 6.25 0.00 0.00 0.00 6.90 NA NA 6.25 NA NA 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 22.73 0.00 NA NA 0.00 5.26 NA 0.00 0.00 3.45 0.00 0.00 NA 4.17 NA 0.00 0.00 0.00 0.00 0.00 6.90 NA 0.00 NA NA 0.00 0.00 NA NA 0.00 K cassette I_chr3L_1494947_1496080,pUf68,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1500389_1501798;chr3L_1499338_1501798 chr3L_1500389_1501345,chr3L_1499338_1501345;chr3L_1501398_1501798 chr3L_1501346_1501397 chr3L_1499043_1499337;chr3L_1501799_1501892 4.35 2.90 3.85 0.00 3.92 3.51 0.00 2.90 3.26 4.88 17.24 7.53 17.14 5.56 6.49 2.90 3.77 4.35 2.70 8.70 14.29 1.96 6.90 5.08 5.26 0.00 8.33 4.26 4.35 6.82 10.59 3.92 10.26 2.11 5.88 2.70 4.69 3.57 6.25 5.94 4.76 3.81 3.92 11.11 1.82 7.14 4.08 5.38 3.85 5.97 9.09 4.08 2.27 5.88 4.48 5.56 0.00 4.23 K intron_retention CG5548 chrX + chrX_14958017_14958081 chrX_14958016_14958017;chrX_14958081_14958082 chrX_14957699_14958016;chrX_14958082_14958834 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 2.47 0.41 0.00 0.00 0.59 0.00 0.00 0.99 0.00 1.94 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 1.17 0.00 1.61 1.25 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8026,I_chr2R_5074640_5074701 chr2R - chr2R_5074640_5075624 chr2R_5074639_5074640;chr2R_5075624_5075625 chr2R_5074540_5074639;chr2R_5075625_5075770 44.14 41.75 49.38 46.84 43.28 36.67 56.52 45.35 48.55 31.03 46.30 45.45 50.00 42.86 38.75 47.69 52.73 40.98 45.10 42.03 50.72 75.64 44.68 45.03 44.14 58.82 41.55 57.14 35.64 43.24 43.94 47.95 53.73 46.53 43.90 47.83 37.14 35.67 35.94 44.53 54.84 39.86 47.83 36.00 51.04 39.86 41.79 52.54 42.22 43.08 38.07 39.51 43.26 39.86 34.88 35.94 45.39 63.64 K alternative_donor Nc73EF,I_chr3L_16950628_16951334,I_chr3L_16950952_16952198,I_chr3L_16951588_16952198,I_chr3L_16951626_16952198,I_chr3L_16952138_16952198,I_chr3L_16952985_16955434,I_chr3L_16953768_16954599 chr3L + chr3L_16950606_16952198;chr3L_16950615_16952198 chr3L_16950628_16952198 chr3L_16952199_16952207;chr3L_16950580_16950605 73.87 57.14 60.00 78.57 71.43 50.00 80.00 72.22 81.48 71.43 60.00 61.11 87.50 71.43 70.00 70.00 57.14 80.00 83.33 75.00 75.00 80.00 55.56 78.57 75.00 100.00 75.00 80.00 100.00 NA 75.00 NA NA 68.18 77.78 100.00 80.00 71.43 71.43 72.73 NA 61.90 57.14 85.71 85.71 71.43 50.00 NA 68.18 56.25 78.95 71.43 NA 80.00 75.00 63.64 83.33 NA K intron_retention CG9170 chrX - chrX_15875706_15875771 chrX_15875705_15875706;chrX_15875771_15875772 chrX_15872214_15875705;chrX_15875772_15875883 0.00 0.00 0.00 22.73 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 NA NA 14.29 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K jcn_only_AA RI_chr4_683177_684480,Slip1,RI_chr4_684369_684451,RI_chr4_684967_689045,I_chr4_685717_686576,RI_chr4_685717_689045,RI_chr4_687548_689045 chr4 + chr4_684369_684480 chr4_684369_684451 chr4_684313_684368;chr4_684481_684551 3.23 2.78 0.00 7.02 0.00 NA 0.00 6.15 2.40 NA 5.00 6.38 4.35 0.00 0.00 6.25 4.17 NA 7.50 0.00 0.00 0.00 0.00 3.85 NA 9.52 0.00 4.17 4.76 0.00 3.45 NA 3.85 2.90 0.00 NA 0.00 NA 4.55 4.55 NA 3.77 3.23 2.38 NA 4.55 NA 0.00 3.57 NA 0.00 0.00 NA NA 2.70 9.09 4.55 NA K intron_retention CG6623,I_chr3R_11040813_11040964,I_chr3R_11042070_11042139 chr3R - chr3R_11040813_11041060 chr3R_11040812_11040813;chr3R_11041060_11041061 chr3R_11040713_11040812;chr3R_11041061_11041064 5.00 0.00 0.00 NA NA NA 0.00 14.29 5.26 NA NA 7.41 NA NA 0.00 15.79 NA NA 14.29 8.33 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA 10.53 NA NA 0.00 0.00 5.00 5.88 NA 0.00 14.29 5.88 NA 0.00 8.70 NA 13.04 0.00 6.25 0.00 0.00 9.09 NA 10.00 7.69 7.69 K alternative_donor Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2629585_2629921 chr3L_2629585_2629913 chr3L_2629141_2629584;chr3L_2629922_2630021 98.04 95.65 96.97 98.04 100.00 94.44 94.44 98.25 96.61 100.00 100.00 96.00 94.37 98.04 100.00 99.26 100.00 100.00 97.83 98.06 96.55 NA 100.00 100.00 84.62 97.73 95.00 NA 96.30 100.00 97.30 100.00 100.00 100.00 94.44 100.00 100.00 90.91 100.00 97.67 100.00 98.39 96.88 94.12 93.33 97.73 92.31 98.23 97.85 90.00 100.00 100.00 100.00 88.89 96.55 96.00 100.00 100.00 K jcn_only_AA ssp4,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13413922_13414718;chr2R_13413823_13414718;chr2R_13414486_13414718;chr2R_13413919_13414718 chr2R_13414489_13414718 chr2R_13414719_13414817 0.00 0.00 0.92 0.51 0.00 0.00 0.00 0.00 0.37 2.38 0.00 0.00 0.00 1.63 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.99 0.66 0.00 0.00 1.06 1.05 0.00 0.38 1.34 0.00 0.00 0.29 0.61 0.00 0.62 0.50 0.85 0.00 0.00 1.07 0.46 4.11 0.63 1.24 1.14 1.54 0.86 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette klar,I_chr3L_462559_472609,RI_chr3L_517594_539898 chr3L - chr3L_445568_449996 chr3L_445568_445731;chr3L_445912_449996 chr3L_445732_445911 chr3L_444601_445567;chr3L_449997_450170 100.00 100.00 100.00 100.00 99.00 100.00 99.29 100.00 99.61 100.00 99.11 100.00 99.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.01 97.99 100.00 99.46 99.16 99.10 99.30 98.80 98.39 100.00 100.00 100.00 98.82 99.43 99.07 99.24 99.18 100.00 97.89 100.00 100.00 100.00 100.00 100.00 98.95 100.00 100.00 99.38 99.51 100.00 99.51 100.00 100.00 100.00 99.32 100.00 100.00 100.00 K multi_cassette zip,I_chr2R_20878796_20879147 chr2R - chr2R_20884825_20887561 chr2R_20884825_20885100;chr2R_20885221_20885800;chr2R_20885825_20887561 chr2R_20885101_20885220;chr2R_20885801_20885824 chr2R_20884732_20884824;chr2R_20887562_20887683 86.67 100.00 82.35 87.50 83.33 68.18 84.00 80.00 88.89 100.00 82.35 97.06 94.12 100.00 83.33 80.95 94.12 83.33 92.31 96.55 70.59 80.00 85.71 96.30 86.67 91.67 86.67 61.54 46.88 89.29 82.35 63.64 84.38 80.00 94.74 84.21 92.86 82.14 95.83 81.82 83.33 94.29 85.00 95.00 58.33 81.25 81.25 94.44 96.77 66.67 92.11 83.33 91.67 100.00 95.00 91.67 94.12 100.00 K intron_retention pgant5,I_chr2L_5079575_5093241 chr2L - chr2L_5092899_5093444 chr2L_5092898_5092899;chr2L_5093444_5093445 chr2L_5092875_5092898;chr2L_5093445_5093575 25.00 NA NA 46.15 NA NA 40.00 36.84 21.05 NA NA NA NA 20.00 NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA 21.43 NA NA NA NA NA NA NA NA NA K alternative_acceptor foi,I_chr3L_8524905_8524976 chr3L + chr3L_8524905_8524976 chr3L_8524905_8524966 chr3L_8524805_8524904;chr3L_8524977_8525076 97.30 99.00 96.58 97.41 97.33 98.72 94.96 96.80 97.91 98.63 98.06 97.48 98.28 97.44 98.10 98.89 98.81 96.97 97.40 97.86 97.87 96.77 97.93 94.53 96.03 93.94 95.38 96.69 95.60 97.80 95.87 95.92 95.45 99.17 97.06 98.26 97.60 97.14 97.30 95.83 95.45 97.78 98.72 97.37 92.00 98.06 96.88 92.98 97.53 95.28 94.90 97.10 98.55 96.55 97.03 98.00 95.83 95.12 K alternative_donor CG10550 chr3R - chr3R_21133632_21134032;chr3R_21133632_21134036 chr3R_21133632_21133902 chr3R_21133411_21133631;chr3R_21134037_21134116 0.00 NA NA 8.33 NA NA 10.00 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA K alternative_donor vlc chr2R + chr2R_1589953_1590371;chr2R_1589894_1590371;chr2R_1589799_1590371;chr2R_1590318_1590371;chr2R_1589807_1590371;chr2R_1590294_1590371;chr2R_1589722_1590371;chr2R_1589693_1590371 chr2R_1589805_1590371 chr2R_1590372_1590451;chr2R_1589612_1589692 1.82 2.94 2.56 1.52 4.35 0.00 1.82 1.52 5.06 0.00 0.00 1.33 2.44 2.33 2.86 4.29 3.23 2.50 2.08 2.94 3.70 5.88 0.00 2.86 4.55 0.00 0.00 7.69 0.00 4.17 2.17 8.33 4.35 1.27 0.00 4.17 0.00 0.00 0.00 0.00 0.00 4.05 2.63 0.00 0.00 0.00 0.00 0.00 2.44 0.00 6.25 0.00 0.00 0.00 1.85 0.00 3.70 0.00 K intron_retention CG9135,I_chr2L_6050922_6051505 chr2L + chr2L_6050922_6051616 chr2L_6050921_6050922;chr2L_6051616_6051617 chr2L_6050822_6050921;chr2L_6051617_6052022 0.00 NA NA 2.94 0.00 0.00 8.70 0.00 0.00 0.00 NA 5.26 0.00 NA 0.00 0.00 NA 0.00 0.00 3.12 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA 0.00 0.00 NA NA 7.14 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA 4.17 NA NA NA K intron_retention rho-4,CG1703 chrX + chrX_11499112_11499170 chrX_11499111_11499112;chrX_11499170_11499171 chrX_11498769_11499111;chrX_11499171_11499252 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.76 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG8632,CG8646 chr2R + chr2R_8540633_8540691 chr2R_8540633_8540686 chr2R_8540334_8540632;chr2R_8540692_8541563 93.33 90.91 90.00 89.47 NA 100.00 100.00 93.33 95.00 NA NA 94.74 NA 100.00 90.91 100.00 NA 78.57 88.89 91.30 100.00 90.91 92.86 93.33 90.00 93.33 93.75 NA 100.00 92.86 90.91 100.00 90.00 92.86 NA 100.00 91.67 93.33 80.00 96.67 100.00 100.00 100.00 100.00 100.00 94.44 90.91 95.45 95.00 87.50 100.00 100.00 87.50 100.00 91.67 100.00 NA 90.00 K cassette CG2182 chr3R - chr3R_1482294_1482520 chr3R_1482294_1482354;chr3R_1482433_1482520 chr3R_1482355_1482432 chr3R_1481952_1482293;chr3R_1482521_1483654 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.48 1.35 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.40 0.00 2.68 0.00 0.00 0.84 0.00 0.55 0.57 0.00 0.74 0.00 0.00 0.87 0.00 1.22 0.00 0.36 0.50 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.63 0.42 0.00 0.00 0.49 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 K alternative_donor sec23,I_chr3R_1474873_1475080,I_chr3R_1474899_1475080,I_chr3R_1474960_1475051,I_chr3R_1477727_1478102 chr3R + chr3R_1474873_1475080;chr3R_1474899_1475080 chr3R_1474960_1475080 chr3R_1475081_1475151;chr3R_1474860_1474872 100.00 96.67 97.44 100.00 100.00 100.00 98.44 98.67 98.84 93.75 100.00 98.67 100.00 97.30 100.00 98.73 94.59 100.00 100.00 98.11 100.00 100.00 100.00 97.56 95.83 97.37 100.00 96.77 100.00 100.00 97.56 100.00 100.00 98.55 100.00 96.00 100.00 100.00 100.00 97.37 100.00 96.15 97.37 100.00 92.31 95.83 100.00 100.00 100.00 100.00 97.73 100.00 100.00 93.75 95.65 100.00 100.00 100.00 K jcn_only_AD sdk,I_chrX_581050_581605,I_chrX_581108_581660,I_chrX_625220_634459,I_chrX_636395_636562 chrX + chrX_581160_581605;chrX_581043_581605;chrX_580974_581605 chrX_581108_581605 chrX_581606_581705;chrX_580950_580973 91.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 91.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention app,RI_chr3L_12201038_12201989,I_chr3L_12259361_12259754 chr3L - chr3L_12201038_12205752 chr3L_12201037_12201038;chr3L_12205752_12205753 chr3L_12200938_12201037;chr3L_12205753_12205867 2.08 0.00 4.35 0.00 0.00 7.14 3.85 0.00 0.00 0.00 12.50 5.66 0.00 0.00 0.00 8.70 0.00 0.00 0.00 3.28 7.41 5.88 3.17 2.04 0.00 6.25 6.67 9.52 7.14 6.67 0.00 0.00 4.55 2.56 0.00 14.29 2.90 0.00 5.00 8.11 0.00 2.13 0.00 3.23 0.00 8.00 0.00 11.11 5.77 0.00 4.35 0.00 0.00 10.53 0.00 NA 0.00 0.00 N alternative_donor Not1,I_chr2R_5463624_5463682 chr2R - chr2R_5455592_5455673;chr2R_5455592_5456522 chr2R_5455592_5456067 chr2R_5455002_5455591;chr2R_5456523_5457661 97.76 98.51 97.73 95.83 98.05 97.16 96.84 97.48 98.05 92.98 97.39 97.16 93.41 97.09 97.89 98.03 98.17 96.67 96.72 96.07 97.33 96.42 98.73 98.50 98.29 98.15 95.41 95.38 97.96 98.46 97.11 98.21 93.70 97.78 97.58 98.42 99.10 98.90 98.97 98.27 97.32 98.41 97.28 98.43 96.75 97.75 97.99 97.22 97.73 97.86 97.76 97.99 99.22 97.35 97.22 97.91 98.95 98.35 K jcn_only_AA Dph5,RI_chr3R_18408634_18408707,CG33107 chr3R - chr3R_18408634_18408707 chr3R_18408638_18408707 chr3R_18408708_18408807;chr3R_18408534_18408633 100.00 99.59 100.00 100.00 100.00 100.00 99.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.55 99.58 100.00 100.00 100.00 98.94 99.68 100.00 99.44 99.39 99.74 100.00 100.00 99.63 100.00 100.00 98.82 100.00 100.00 100.00 99.60 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.62 100.00 100.00 K intron_retention l(1)G0196,I_chrX_21890195_21895316,I_chrX_21900456_21904601 chrX + chrX_21894258_21895316 chrX_21894257_21894258;chrX_21895316_21895317 chrX_21894114_21894257;chrX_21895317_21895416 5.04 6.17 5.83 6.75 2.17 5.61 7.56 7.61 4.85 3.03 9.59 7.26 10.14 4.08 5.04 5.39 4.76 4.39 9.09 4.28 7.53 4.12 4.60 8.62 1.54 4.88 5.63 3.57 4.00 3.09 6.25 6.78 4.43 6.82 2.90 3.45 4.21 6.25 4.40 1.38 6.02 4.48 5.56 2.65 7.69 6.73 5.26 0.39 3.85 4.76 3.28 6.25 7.41 12.00 3.10 13.16 5.41 4.76 K alternative_donor CG9674,I_chr3L_16793055_16793171,I_chr3L_16793055_16793190,I_chr3L_16793055_16800660 chr3L - chr3L_16793055_16793196;chr3L_16793055_16793173 chr3L_16793055_16793200 chr3L_16792955_16793054;chr3L_16793201_16793268 100.00 NA NA 100.00 NA NA 96.30 95.45 94.12 NA 100.00 NA NA NA NA 100.00 NA NA 100.00 95.65 NA 96.77 100.00 NA NA NA 72.73 100.00 100.00 NA 95.45 NA 100.00 100.00 100.00 NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA N multi_cassette CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1525393_1529105 chr3L_1525393_1525641;chr3L_1525704_1527189;chr3L_1527382_1527438;chr3L_1527614_1527673;chr3L_1528077_1529105 chr3L_1525642_1525703;chr3L_1527190_1527381;chr3L_1527439_1527613;chr3L_1527674_1528076 chr3L_1525293_1525392;chr3L_1529106_1529206 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 42.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG17233,I_chr3L_20232803_20232962,RI_chr3L_20232898_20232962 chr3L - chr3L_20232648_20232962;chr3L_20232714_20232962;chr3L_20232711_20232962 chr3L_20232645_20232962 chr3L_20232963_20233016;chr3L_20232147_20232644 0.00 0.00 0.00 0.00 4.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 4.76 4.76 0.00 0.00 0.00 4.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 2.63 0.00 NA 2.27 2.33 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.56 0.00 0.00 NA 3.70 5.26 0.00 0.00 K intron_retention mfas,I_chr3R_7811954_7812017,I_chr3R_7818597_7818853,I_chr3R_7818607_7818853,RI_chr3R_7818607_7818970 chr3R - chr3R_7818597_7818853 chr3R_7818596_7818597;chr3R_7818853_7818854 chr3R_7818507_7818596;chr3R_7818854_7818892 93.75 90.62 85.29 82.93 91.30 96.55 97.83 92.77 96.55 93.33 94.12 92.11 94.83 85.37 98.00 94.55 92.86 96.55 92.16 95.79 90.70 91.67 96.55 95.65 95.45 87.88 91.84 92.59 94.74 93.75 96.97 94.74 90.00 92.77 95.65 95.00 100.00 100.00 96.00 88.89 94.44 96.30 91.49 86.67 84.21 91.43 95.24 100.00 92.55 100.00 93.02 95.65 91.67 92.31 88.24 95.83 100.00 85.71 K intron_retention CG17370,RI_chr3R_21707998_21710705,RI_chr3R_21714780_21715376 chr3R + chr3R_21711552_21711616 chr3R_21711551_21711552;chr3R_21711616_21711617 chr3R_21711104_21711551;chr3R_21711617_21711742 0.00 0.00 2.86 4.17 0.00 0.00 0.00 6.52 4.17 0.00 0.00 3.92 0.00 7.69 0.00 4.44 6.06 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 14.29 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 5.88 N jcn_only_AD CG9940 chrX - chrX_13601748_13612161 chrX_13601748_13603401 chrX_13601629_13601747;chrX_13612162_13612298 0.00 0.00 0.00 0.00 27.59 0.00 0.00 12.90 0.00 0.00 0.00 20.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.38 0.00 0.00 0.00 10.26 0.00 0.00 NA 0.00 0.00 0.00 0.00 6.02 20.93 NA 0.00 0.00 37.14 0.00 0.00 0.00 0.00 10.58 K intron_retention X11L,RE_chrX_17497873_17498103 chrX + chrX_17497127_17497188 chrX_17497126_17497127;chrX_17497188_17497189 chrX_17496185_17497126;chrX_17497189_17497504 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Adk2,I_chr2R_19912891_19912937 chr2R + chr2R_19912891_19912954 chr2R_19912890_19912891;chr2R_19912954_19912955 chr2R_19912791_19912890;chr2R_19912955_19913037 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.49 0.00 0.97 0.36 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 1.37 2.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.68 0.82 0.00 0.00 0.58 0.81 0.31 0.00 0.22 0.59 0.00 0.00 0.00 0.51 0.44 0.00 0.17 0.00 K intron_retention unc-13,I_chr4_904268_904671,CRE_chr4_904268_906381,I_chr4_904268_919018,I_chr4_904747_906385,REI_chr4_906314_906385,I_chr4_906518_906708,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_904268_919018 chr4_904267_904268;chr4_919018_919019 chr4_904196_904267;chr4_919019_919102 7.69 NA NA 26.32 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA 60.00 NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG6448,I_chr2L_22146997_22156620 chr2L + chr2L_22146997_22156620 chr2L_22146997_22154797;chr2L_22155409_22156620 chr2L_22154798_22155408 chr2L_22146897_22146996;chr2L_22156621_22156720 99.01 100.00 99.24 87.13 99.07 98.20 97.35 97.52 98.73 98.92 98.94 99.59 100.00 97.25 98.61 98.52 99.00 98.02 99.14 97.17 98.15 98.34 99.44 98.84 100.00 99.23 98.73 100.00 98.20 97.67 97.86 98.73 99.43 99.48 100.00 98.55 100.00 99.22 99.48 99.18 96.15 98.59 96.97 98.80 99.15 99.39 99.23 99.46 98.39 99.32 100.00 98.97 100.00 99.01 99.35 99.10 99.33 99.33 K intron_retention CG17760 chr2R + chr2R_8514897_8515102 chr2R_8514896_8514897;chr2R_8515102_8515103 chr2R_8514742_8514896;chr2R_8515103_8515231 0.99 0.00 0.81 1.43 2.25 0.00 2.87 0.87 0.76 4.44 0.00 1.56 2.53 0.00 1.52 1.05 0.00 0.00 1.69 1.49 0.00 3.28 0.00 0.99 1.61 2.73 1.82 0.00 3.92 0.00 1.83 4.44 3.12 1.19 3.28 0.00 1.12 0.00 2.56 1.75 0.00 0.78 0.00 0.00 3.39 0.00 2.22 0.00 1.25 2.20 0.98 0.00 0.00 0.00 0.62 0.00 1.75 0.00 K alternative_acceptor Ras85D,I_chr3R_5338160_5338509,EI_chr3R_5338175_5338279,I_chr3R_5338175_5338299 chr3R - chr3R_5338160_5338509 chr3R_5338175_5338509 chr3R_5338510_5338609;chr3R_5338075_5338159 99.24 98.73 100.00 98.93 100.00 98.98 100.00 99.40 99.54 95.31 99.12 99.42 100.00 100.00 99.15 99.31 98.86 99.09 99.08 99.67 99.10 99.35 100.00 98.89 100.00 97.87 98.81 100.00 98.39 99.04 99.28 100.00 98.68 99.35 98.53 98.72 98.46 98.70 100.00 98.04 99.14 99.50 100.00 98.91 99.28 99.24 100.00 99.47 99.49 98.39 98.59 98.33 98.68 100.00 99.24 100.00 98.91 99.52 K mutually_exclusive norpA,I_chrX_4219265_4219380 chrX + chrX_4247647_4248503,chrX_4248584_4251072 chrX_4247647_4247976,chrX_4248057_4251072 chrX_4248504_4248583 chrX_4247977_4248056 chrX_4247500_4247646;chrX_4251073_4251309 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 K alternative_acceptor msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585716_2586402;chr3L_2585733_2586402 chr3L_2585739_2586402 chr3L_2586403_2586502;chr3L_2585639_2585715 95.03 93.18 91.86 98.26 92.86 90.67 95.45 94.70 97.44 100.00 95.24 97.84 96.05 97.59 97.83 95.90 94.74 94.03 96.55 95.00 92.59 94.03 93.51 96.61 100.00 97.47 96.55 88.89 94.20 96.23 96.70 89.29 90.28 96.38 95.08 94.92 92.00 95.65 96.15 95.24 95.56 96.20 91.30 96.97 92.31 98.11 93.10 93.86 95.03 90.48 94.38 93.75 90.00 90.48 96.04 94.59 95.45 91.67 K intron_retention dnc,I_chrX_3150245_3150319,I_chrX_3150351_3152643 chrX + chrX_3226580_3228183 chrX_3226579_3226580;chrX_3228183_3228184 chrX_3226475_3226579;chrX_3228184_3228364 36.36 NA NA NA NA NA 28.57 45.45 38.89 NA NA NA 45.45 NA 38.46 NA NA NA 21.43 53.33 NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA 30.00 NA NA NA NA NA 36.36 NA NA NA K alternative_donor l(2)k05819,I_chr2L_4396173_4396266 chr2L + chr2L_4396128_4396809;chr2L_4396407_4396809 chr2L_4396173_4396809 chr2L_4396810_4396906;chr2L_4396073_4396127 44.83 47.54 48.65 59.80 47.22 46.03 51.89 46.46 41.57 38.89 65.52 30.15 33.33 56.90 57.35 47.52 37.88 61.67 64.52 48.81 53.12 33.96 41.86 50.00 33.90 80.33 55.06 81.25 35.82 44.00 42.03 66.67 29.11 44.95 43.18 53.33 36.17 28.57 39.09 43.18 37.50 42.76 55.56 35.71 44.83 45.00 43.18 35.00 46.49 60.61 39.19 45.28 31.25 35.71 56.98 34.21 29.79 23.81 K intron_retention I_chr2L_6323791_6325172,Gef26,I_chr2L_6330719_6330770 chr2L + chr2L_6330564_6330770 chr2L_6330563_6330564;chr2L_6330770_6330771 chr2L_6330244_6330563;chr2L_6330771_6330832 17.03 15.38 NA NA NA NA NA NA 12.00 NA NA NA NA NA NA NA NA NA NA NA NA 48.48 NA 28.57 NA NA 14.29 NA NA NA NA NA NA NA NA NA 14.29 16.67 16.67 30.00 NA 23.53 NA 21.05 0.00 NA NA NA 15.38 NA NA NA 17.65 NA NA NA 17.39 30.77 K cassette Gpo-1,I_chr2R_11747621_11747699,EI_chr2R_11747445_11747699,I_chr2R_11749758_11750187,I_chr2R_11756325_11756380 chr2R - chr2R_11747445_11747699 chr2R_11747445_11747511;chr2R_11747621_11747699 chr2R_11747512_11747620 chr2R_11747345_11747444;chr2R_11747700_11747768 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.37 96.00 100.00 100.00 100.00 100.00 97.78 98.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.15 100.00 98.48 100.00 100.00 100.00 98.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Tsp86D chr3R + chr3R_6695308_6695364 chr3R_6695307_6695308;chr3R_6695364_6695365 chr3R_6694420_6695307;chr3R_6695365_6696379 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5205 chr3R + chr3R_11311996_11312049 chr3R_11311995_11311996;chr3R_11312049_11312050 chr3R_11311842_11311995;chr3R_11312050_11313147 11.76 NA NA 26.09 NA NA 9.68 0.00 7.14 12.50 NA 11.76 NA NA 0.00 14.29 NA NA NA 7.69 NA 26.47 10.20 16.00 17.14 NA 21.88 19.40 22.22 16.67 NA NA 5.56 9.52 0.00 19.15 11.43 10.71 6.67 14.29 NA 7.69 NA 11.76 NA NA 17.65 3.85 16.00 NA 14.81 NA NA NA NA NA NA NA K intron_retention CG32809,I_chrX_1576815_1577129,I_chrX_1577031_1577129,CEI_chrX_1579569_1579679,RI_chrX_1585391_1586471,I_chrX_1589508_1589564 chrX - chrX_1569282_1569351 chrX_1569281_1569282;chrX_1569351_1569352 chrX_1569042_1569281;chrX_1569352_1571098 94.12 94.12 100.00 95.83 NA 91.67 95.65 92.31 96.55 100.00 87.50 92.00 92.31 93.75 95.00 96.88 100.00 100.00 94.74 100.00 93.33 72.73 100.00 93.75 100.00 93.33 94.12 NA 88.89 80.95 96.77 92.86 90.48 100.00 100.00 94.12 93.33 NA 100.00 92.59 85.71 100.00 93.75 100.00 92.31 96.43 100.00 96.30 88.89 86.67 95.45 100.00 NA 90.91 95.24 93.75 93.75 91.30 K alternative_donor RpL28,RI_chr3L_3221710_3221877,I_chr3L_3221982_3222744,snoRNA:Or-CD11c,snoRNA:Or-CD11b,snoRNA:Or-CD11a,I_chr3L_3222575_3222787 chr3L - chr3L_3221982_3222787;chr3L_3221982_3222152;chr3L_3221982_3222926;chr3L_3221982_3222365;chr3L_3221982_3222847 chr3L_3221982_3222574 chr3L_3221882_3221981;chr3L_3222927_3222958 0.39 0.00 0.00 0.00 0.00 0.88 1.37 0.11 0.49 2.20 0.00 1.58 0.00 1.96 0.39 0.75 0.33 0.00 0.22 0.43 0.00 0.34 2.94 3.17 0.00 0.00 0.00 8.70 0.00 1.72 0.58 0.23 0.00 0.13 0.00 0.00 4.08 0.00 4.17 1.79 0.00 0.28 0.00 2.56 0.00 0.69 4.00 0.59 0.67 3.85 4.76 4.55 0.59 0.00 0.22 2.86 2.35 0.41 K jcn_only_AD Dscam,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3249373_3250528;chr2R_3249373_3251682;chr2R_3249373_3254309;chr2R_3249373_3253447;chr2R_3249373_3252236;chr2R_3249373_3252816;chr2R_3249373_3253970;chr2R_3249373_3250836;chr2R_3249373_3251960;chr2R_3249373_3251099 chr2R_3249373_3252522 chr2R_3249273_3249372 6.45 0.00 4.26 0.00 8.00 0.00 7.50 12.07 4.88 0.00 NA 7.35 8.11 8.82 12.20 7.55 2.78 0.00 2.86 14.44 12.00 2.50 4.29 5.56 17.02 8.00 8.11 6.45 7.14 4.71 15.69 0.00 8.75 10.91 6.45 11.90 7.27 2.63 7.32 5.62 3.45 7.69 9.38 6.90 4.55 2.63 4.17 8.14 11.94 NA 6.67 5.00 6.45 NA 1.92 5.00 NA 4.35 K jcn_only_AA CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908142_9908424,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907784_9908424;chr2L_9907848_9908424 chr2L_9908142_9908424 chr2L_9908425_9908505;chr2L_9907756_9907783 0.00 3.28 0.00 0.77 0.00 0.00 0.00 0.98 2.16 NA 8.57 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 4.88 3.45 0.00 0.00 3.77 5.45 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.92 1.92 0.00 2.99 1.72 0.00 0.00 3.33 1.74 0.00 0.00 3.45 2.00 2.27 0.00 2.17 0.00 0.00 3.85 0.00 0.00 1.33 0.00 0.00 0.00 K jcn_only_AA Fur1,I_chr3R_21179590_21179870,CEI_chr3R_21210600_21222433,I_chr3R_21257704_21287086 chr3R - chr3R_21177936_21179870;chr3R_21177915_21179870 chr3R_21179590_21179870 chr3R_21179871_21179970;chr3R_21177839_21177914 1.33 1.47 3.51 0.00 0.00 2.17 0.00 1.30 1.24 1.22 33.33 4.20 0.00 1.79 3.61 3.51 0.00 2.86 2.17 0.61 10.42 2.36 1.71 4.26 1.08 4.17 1.23 0.00 1.48 2.68 1.33 1.59 1.48 0.00 0.00 0.00 0.75 1.30 0.00 5.59 2.25 0.58 0.00 3.25 1.11 2.79 0.00 0.90 1.52 1.33 1.63 1.85 0.00 0.00 2.53 1.33 0.00 1.03 K intron_retention CG31064,RI_chr3R_23056388_23064246,I_chr3R_23069667_23070365 chr3R - chr3R_23056167_23056289 chr3R_23056166_23056167;chr3R_23056289_23056290 chr3R_23055268_23056166;chr3R_23056290_23056387 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Rtc1,I_chrX_13652113_13652182,I_chrX_13653840_13653902 chrX + chrX_13652113_13652182 chrX_13652117_13652182 chrX_13652183_13652247;chrX_13652053_13652112 100.00 100.00 100.00 100.00 100.00 100.00 97.22 97.14 98.04 100.00 93.75 98.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 93.33 100.00 97.62 100.00 100.00 100.00 97.78 100.00 100.00 97.14 100.00 97.62 98.18 96.67 95.45 100.00 100.00 100.00 100.00 98.31 100.00 97.73 100.00 100.00 100.00 100.00 100.00 97.92 94.74 100.00 100.00 100.00 100.00 100.00 96.88 97.83 94.37 96.59 K alternative_acceptor roq,CG4753 chr3L - chr3L_16367765_16367959 chr3L_16367768_16367959 chr3L_16367960_16370110;chr3L_16367508_16367764 88.77 90.32 85.71 94.29 87.50 90.00 83.33 93.75 88.64 84.62 84.62 89.19 60.00 90.91 90.91 90.48 85.71 92.86 90.00 87.72 69.23 90.62 92.86 87.50 90.00 91.67 89.74 81.48 88.24 95.83 91.67 90.91 78.26 81.58 94.74 95.24 83.33 86.05 87.76 87.50 NA 94.12 88.89 86.05 78.95 95.65 93.55 90.91 87.50 81.82 88.64 92.31 82.35 93.75 80.00 86.36 88.46 92.31 K cassette dgt1,CG7824 chr3R - chr3R_25680766_25681674 chr3R_25680766_25680851;chr3R_25681371_25681674 chr3R_25680852_25681370 chr3R_25680427_25680765;chr3R_25681675_25682075 10.71 7.79 15.22 4.92 8.51 11.76 17.24 10.53 15.19 12.96 11.11 15.19 10.81 11.11 10.26 48.57 11.11 8.16 9.38 7.78 17.65 23.26 11.54 7.50 10.00 5.77 16.25 21.88 22.22 14.49 10.20 17.46 19.12 10.61 12.20 7.81 6.61 9.21 12.99 15.32 9.20 10.13 6.45 12.22 10.99 10.08 8.79 8.77 9.76 9.70 10.71 13.33 6.67 11.29 7.41 10.87 6.09 8.40 K jcn_only_AA Ddip2,I_chr3L_252776_253313 chr3L - chr3L_252945_253313 chr3L_252996_253313 chr3L_253314_253413;chr3L_252835_252944 50.00 58.97 33.33 68.33 31.03 48.48 60.00 56.52 58.33 52.38 61.76 66.07 53.57 59.38 31.25 40.43 52.94 50.00 47.50 45.45 37.50 68.52 37.31 52.50 59.09 46.88 42.86 68.97 82.86 42.22 28.95 60.87 46.51 52.73 63.33 56.86 37.25 47.37 47.22 57.50 58.06 60.61 58.33 45.10 61.90 44.44 37.93 58.54 53.45 43.90 50.00 46.43 38.46 NA 48.57 28.12 47.37 47.37 K jcn_only_AA cryptocephal,noncoding_4181,I_chr2L_21311307_21311752,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21311033_21311913 chr2L_21311033_21311752 chr2L_21310948_21311032;chr2L_21311914_21312043 99.93 99.79 99.86 100.00 100.00 100.00 99.81 100.00 100.00 100.00 100.00 99.94 100.00 100.00 99.87 99.89 99.84 99.78 99.91 99.49 100.00 99.64 99.70 100.00 100.00 100.00 99.77 99.17 99.59 99.42 99.90 100.00 100.00 99.94 99.73 100.00 100.00 99.62 99.63 100.00 100.00 99.93 99.87 100.00 99.16 100.00 98.91 99.57 99.81 99.71 100.00 100.00 100.00 99.56 99.90 99.68 100.00 100.00 K intron_retention B52,E_chr3R_9488770_9491174 chr3R + chr3R_9491971_9492140 chr3R_9491970_9491971;chr3R_9492140_9492141 chr3R_9491806_9491970;chr3R_9492141_9492586 0.80 0.79 0.43 1.47 0.00 2.53 0.50 2.73 1.56 0.91 0.00 0.41 2.17 0.00 0.90 2.25 1.56 0.00 1.62 1.10 2.80 0.85 0.54 0.47 0.26 1.66 1.17 1.07 2.17 0.00 0.80 1.26 2.54 0.92 0.52 1.32 0.78 0.43 0.30 0.78 1.12 1.15 0.00 0.59 0.84 0.42 0.18 1.79 1.56 0.18 0.54 1.32 0.56 0.00 0.00 0.71 0.22 1.13 K intron_retention Fancd2 chr3R - chr3R_16640494_16640547 chr3R_16640493_16640494;chr3R_16640547_16640548 chr3R_16640303_16640493;chr3R_16640548_16640616 10.71 NA 0.00 12.50 NA NA 22.22 12.50 10.71 NA NA 18.18 NA NA NA 0.00 NA NA NA 8.33 NA 30.77 8.70 NA 23.08 NA 14.29 NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA 0.00 NA 15.62 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA Gp150,I_chr2R_18205316_18205386,I_chr2R_18213233_18213308 chr2R + chr2R_18205243_18205338;chr2R_18205243_18212679 chr2R_18205243_18205386 chr2R_18205216_18205242 99.87 100.00 99.49 99.68 100.00 98.82 99.29 100.00 99.69 100.00 99.38 99.60 100.00 100.00 98.87 99.82 99.78 99.40 99.55 99.87 99.46 98.73 99.52 99.30 99.03 99.71 100.00 97.78 96.77 100.00 99.71 100.00 100.00 100.00 100.00 100.00 99.26 98.00 99.44 100.00 100.00 99.88 100.00 100.00 100.00 100.00 100.00 100.00 99.35 100.00 100.00 100.00 100.00 100.00 99.80 98.41 98.94 100.00 K intron_retention ced-6,I_chr2R_5324717_5324924,I_chr2R_5328640_5328696,I_chr2R_5331785_5332177 chr2R - chr2R_5325238_5328206 chr2R_5325237_5325238;chr2R_5328206_5328207 chr2R_5324931_5325237;chr2R_5328207_5328311 0.26 0.00 0.00 0.00 0.00 0.89 2.65 1.17 0.56 0.00 1.31 0.82 0.00 1.00 0.74 0.67 0.00 0.00 0.00 1.31 0.00 3.21 0.60 0.71 0.00 0.76 1.55 0.00 0.67 0.00 0.47 0.00 0.68 1.05 0.00 1.25 0.00 0.46 0.37 0.59 0.00 0.91 0.00 0.26 0.00 0.00 0.00 0.38 0.21 0.00 0.36 0.00 0.00 0.86 1.27 0.00 0.00 0.00 K intron_retention CG4774,RI_chr3R_21512589_21512972 chr3R - chr3R_21512589_21512667 chr3R_21512588_21512589;chr3R_21512667_21512668 chr3R_21512489_21512588;chr3R_21512668_21512736 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA K intron_retention spin,I_chr2R_12013288_12013847 chr2R + chr2R_12020596_12023531 chr2R_12020595_12020596;chr2R_12023531_12023532 chr2R_12020539_12020595;chr2R_12023532_12023630 9.20 8.89 16.67 21.79 8.33 13.33 8.00 10.26 12.50 2.99 11.11 12.36 6.90 16.67 12.20 7.27 13.33 8.33 16.00 7.59 10.71 29.51 13.54 10.00 9.52 8.33 11.25 3.87 8.64 8.08 12.12 10.61 8.43 14.04 7.46 14.89 9.20 5.17 12.00 8.59 6.48 9.09 9.09 9.73 5.56 9.90 5.63 7.74 8.14 9.38 10.98 10.42 1.30 4.88 16.28 6.94 5.56 4.52 N alternative_donor MED10,I_chr3L_16225377_16225479 chr3L + chr3L_16225377_16225485 chr3L_16225424_16225485 chr3L_16225486_16225579;chr3L_16225277_16225376 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 63.64 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG7580,I_chr3L_17468259_17468509,I_chr3L_17468271_17468509,RI_chr3L_17468444_17468509 chr3L + chr3L_17468236_17468509 chr3L_17468235_17468236;chr3L_17468509_17468510 chr3L_17468171_17468235;chr3L_17468510_17468609 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.38 0.60 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Prp8,I_chr2R_8046315_8046511,I_chr2R_8050245_8050389 chr2R - chr2R_8046289_8046511 chr2R_8046315_8046511 chr2R_8046512_8046611;chr2R_8046215_8046288 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.61 0.00 0.00 0.00 0.70 0.66 1.27 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.49 0.00 0.00 1.45 0.88 1.37 1.16 0.00 K intron_retention RI_chr2R_5006333_5006392,CG11784 chr2R + chr2R_5010073_5010126 chr2R_5010072_5010073;chr2R_5010126_5010127 chr2R_5010068_5010072;chr2R_5010127_5010815 0.00 0.00 0.00 0.00 NA 0.00 NA 2.94 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 6.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 10.00 0.00 NA 2.86 0.00 0.00 0.00 0.00 2.70 0.00 NA 0.00 NA 0.00 0.00 3.70 0.00 NA 0.00 6.67 0.00 NA 0.00 2.94 0.00 0.00 0.00 0.00 K intron_retention SNF1A chrX + chrX_1269789_1269902 chrX_1269788_1269789;chrX_1269902_1269903 chrX_1269580_1269788;chrX_1269903_1270220 100.00 90.91 NA 100.00 NA 100.00 100.00 91.67 100.00 NA 100.00 100.00 88.89 NA 100.00 NA NA NA NA 100.00 NA 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 96.30 100.00 100.00 NA 100.00 100.00 100.00 95.00 100.00 100.00 NA 90.00 100.00 100.00 NA 96.15 92.86 NA 100.00 NA NA NA 100.00 100.00 100.00 100.00 K multi_cassette Haspin,F_chr2RHet_3208841_3212285,F_chr2RHet_3212408_3212898,F_chr2RHet_3213046_3213594 chr2RHet + chr2RHet_3200480_3234342 chr2RHet_3200480_3215005;chr2RHet_3215210_3215266;chr2RHet_3215563_3234342 chr2RHet_3215006_3215209;chr2RHet_3215267_3215562 chr2RHet_3200469_3200479;chr2RHet_3234343_3234575 93.75 87.50 100.00 34.78 75.00 100.00 93.75 95.00 95.24 75.00 100.00 76.47 100.00 100.00 75.00 72.00 85.71 85.71 91.67 100.00 100.00 100.00 100.00 100.00 75.00 80.00 100.00 75.00 33.33 100.00 100.00 83.33 80.00 94.74 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 66.67 66.67 87.50 88.89 83.33 85.00 83.33 100.00 100.00 83.33 100.00 87.50 100.00 92.31 86.67 K intron_retention CG7332,I_chrX_18779996_18780073,RI_chrX_18780777_18780878 chrX + chrX_18780777_18780868 chrX_18780776_18780777;chrX_18780868_18780869 chrX_18780677_18780776;chrX_18780869_18780879 0.00 0.00 0.00 4.88 0.00 0.00 0.00 0.00 3.70 NA 0.00 6.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 14.29 4.65 5.71 0.00 3.57 11.43 NA 3.85 10.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.13 0.00 5.88 3.57 0.00 0.00 5.71 0.00 0.00 2.70 4.88 0.00 3.23 0.00 0.00 9.52 2.50 0.00 0.00 0.00 K intron_retention Pez chr2L - chr2L_6333808_6333861 chr2L_6333807_6333808;chr2L_6333861_6333862 chr2L_6333484_6333807;chr2L_6333862_6334038 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 6.25 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention lola,I_chr2R_6380094_6419543,I_chr2R_6380747_6419543,I_chr2R_6394546_6419543,I_chr2R_6404486_6419543,R_chr2R_6408775_6419537,I_chr2R_6409616_6419543,I_chr2R_6419625_6419686,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6419625_6419685 chr2R_6419624_6419625;chr2R_6419685_6419686 chr2R_6419549_6419624;chr2R_6419686_6420399 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.14 0.21 0.00 0.85 0.00 0.53 0.29 0.39 0.00 0.90 0.89 0.00 0.34 0.29 0.00 0.00 0.18 0.00 0.00 0.18 0.45 0.00 0.00 0.37 0.00 0.00 0.29 0.25 0.00 0.00 0.00 0.25 0.24 0.00 0.00 0.00 0.33 0.00 0.18 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.74 0.12 K cassette Actn,I_chrX_1922061_1924247,I_chrX_1922784_1923807,I_chrX_1922784_1923873 chrX - chrX_1922061_1923807;chrX_1922061_1923873;chrX_1922061_1924247 chrX_1922061_1922697;chrX_1922784_1923807,chrX_1922784_1923873,chrX_1922784_1924247 chrX_1922698_1922783 chrX_1921968_1922060;chrX_1924248_1924347 100.00 100.00 100.00 97.62 96.00 95.83 66.67 100.00 100.00 95.45 100.00 100.00 100.00 95.00 96.77 100.00 100.00 100.00 100.00 98.33 100.00 92.73 97.96 97.56 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 96.43 100.00 100.00 100.00 98.11 97.44 97.44 97.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.15 100.00 96.00 100.00 100.00 100.00 96.88 100.00 K intron_retention CG11163,I_chr2R_1666219_1669711 chr2R - chr2R_1666133_1670219 chr2R_1666132_1666133;chr2R_1670219_1670220 chr2R_1666119_1666132;chr2R_1670220_1670281 100.00 95.24 100.00 100.00 93.75 100.00 97.67 100.00 98.08 100.00 100.00 98.08 100.00 96.67 96.15 98.41 100.00 100.00 100.00 98.46 100.00 100.00 95.24 100.00 100.00 95.24 100.00 NA 100.00 95.83 100.00 100.00 100.00 93.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.23 100.00 100.00 100.00 97.92 92.86 98.55 97.18 100.00 96.77 100.00 100.00 100.00 100.00 100.00 94.74 98.33 K alternative_donor CG14621,tilB chrX + chrX_21848011_21848366 chrX_21848015_21848366 chrX_21848367_21848914;chrX_21847885_21848010 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 2.86 2.38 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette tan,R_chr3L_6048520_6048578,R_chr3L_6048608_6048676 chr3L + chr3L_6048520_6048816 chr3L_6048520_6048689;chr3L_6048764_6048816 chr3L_6048690_6048763 chr3L_6048508_6048519;chr3L_6048817_6048925 100.00 85.71 87.50 100.00 100.00 NA 100.00 100.00 93.33 NA 100.00 100.00 100.00 87.50 90.91 100.00 100.00 87.50 88.89 93.75 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 83.33 88.89 NA NA 100.00 NA NA 92.86 100.00 90.91 100.00 NA 100.00 90.91 88.89 NA 85.71 90.91 85.71 100.00 NA 91.67 100.00 NA 100.00 100.00 NA 100.00 100.00 K intron_retention CG31224 chr3R - chr3R_14477642_14477781 chr3R_14477641_14477642;chr3R_14477781_14477782 chr3R_14475982_14477641;chr3R_14477782_14478758 0.00 0.00 0.00 3.51 0.00 0.00 3.12 3.77 1.01 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 1.57 1.28 0.00 0.00 1.16 2.41 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 2.50 0.00 0.00 3.23 2.20 0.00 0.00 0.00 0.00 2.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 K alternative_donor CG1354,I_chrX_9672972_9673084,I_chrX_9673026_9673084 chrX + chrX_9673026_9673084;chrX_9672972_9673084;chrX_9672967_9673084 chrX_9672947_9673084 chrX_9673085_9673184;chrX_9672926_9672946 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.80 100.00 100.00 100.00 100.00 100.00 100.00 98.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.68 97.62 100.00 100.00 100.00 100.00 100.00 100.00 98.46 100.00 100.00 98.44 94.12 100.00 100.00 97.30 100.00 100.00 100.00 K intron_retention aub chr2L - chr2L_10999451_10999517 chr2L_10999450_10999451;chr2L_10999517_10999518 chr2L_10999061_10999450;chr2L_10999518_10999672 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4630,RI_chr2R_9103472_9103634,I_chr2R_9103765_9103852,I_chr2R_9103956_9104108,RI_chr2R_9104206_9104265,I_chr2R_9105809_9106399 chr2R - chr2R_9105705_9106592 chr2R_9105704_9105705;chr2R_9106592_9106593 chr2R_9105094_9105704;chr2R_9106593_9106722 14.29 NA NA NA NA NA NA NA NA NA NA 23.08 NA NA NA NA NA NA NA NA NA NA 15.38 5.56 14.29 NA 11.11 NA NA NA 5.56 NA NA NA 12.50 27.78 NA NA 4.55 11.11 NA 28.57 NA NA NA NA 14.29 NA 14.29 NA NA NA NA NA NA NA NA NA K alternative_donor CG18766,I_chr3R_23069667_23070256,I_chr3R_23069667_23070318,RI_chr3R_23069667_23070361,I_chr3R_23069667_23070365 chr3R - chr3R_23069667_23070732;chr3R_23069667_23070911 chr3R_23069667_23070738 chr3R_23069567_23069666;chr3R_23070912_23070951 82.86 91.67 79.07 81.33 75.86 68.75 76.56 81.08 76.34 86.67 84.38 78.48 72.22 78.57 70.83 77.27 84.21 82.86 85.00 81.91 69.23 72.41 88.68 82.35 96.43 88.46 91.18 94.12 72.73 90.00 84.78 68.97 81.08 78.79 83.33 93.55 83.78 89.66 87.88 77.94 88.89 72.97 78.38 79.41 72.73 92.59 81.58 92.86 80.00 84.62 85.11 90.32 88.00 92.59 76.00 87.80 87.80 87.80 N alternative_last_exon CG14235,noncoding_24847,CG18809,noncoding_24848 chrX - chrX_19635199_19638032 chrX_19637740_19638032 chrX_19634580_19635198 chrX_19637477_19637739 chrX_19638033_19638057 8.33 22.22 6.25 8.33 9.09 14.29 11.11 10.00 5.88 9.09 16.67 13.33 16.67 5.26 7.14 5.26 11.11 11.11 16.67 41.18 8.33 20.00 6.25 8.33 7.14 7.14 28.57 10.00 10.00 6.67 2.38 4.00 3.28 10.00 17.65 13.33 13.33 11.76 13.64 3.70 5.19 3.70 5.00 4.00 3.90 3.64 7.41 9.68 7.14 3.03 11.11 25.00 6.67 7.69 10.00 7.69 2.94 3.90 K alternative_acceptor CG10732,I_chr3L_13438999_13439071 chr3L + chr3L_13438999_13439111 chr3L_13438999_13439108 chr3L_13438899_13438998;chr3L_13439112_13439171 12.50 22.22 7.69 11.54 14.29 25.00 11.11 16.67 11.11 11.11 26.67 15.38 NA NA 12.50 4.35 NA 7.69 NA 12.50 NA 8.57 10.71 9.52 11.11 12.50 12.50 11.54 10.00 23.81 23.08 10.00 19.05 22.22 7.14 17.65 12.24 10.53 23.08 18.60 NA 10.00 6.67 17.86 19.05 NA 15.79 17.65 15.38 18.18 9.38 12.50 11.76 20.00 19.05 17.65 19.05 26.67 N jcn_only_AA Pmi,PGRP-LD chr3L + chr3L_5775409_5775770 chr3L_5775409_5775724 chr3L_5775097_5775408;chr3L_5775771_5775948 35.50 NA NA 0.00 NA NA 40.00 0.00 32.50 NA NA 50.00 NA NA NA NA NA NA NA 35.29 NA 42.42 42.31 NA NA 65.22 NA NA NA NA 35.53 NA 42.31 0.00 NA NA NA NA NA NA NA 29.17 NA NA NA NA NA NA 35.56 NA NA NA NA NA 0.00 NA 35.48 NA K intron_retention CG6617,RI_chrX_18544139_18544185 chrX - chrX_18544126_18544185 chrX_18544125_18544126;chrX_18544185_18544186 chrX_18544039_18544125;chrX_18544186_18544285 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.98 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA gcl,I_chr2R_4611970_4612145,I_chr2R_4614277_4614332 chr2R + chr2R_4611970_4614119 chr2R_4611970_4612145 chr2R_4611870_4611969;chr2R_4614120_4614231 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA 3.57 NA NA NA 0.00 NA 10.00 NA 4.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 3.12 NA NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 6.67 NA NA NA NA NA NA NA NA 0.00 K cassette CG34140,CG34140_Mkp,noncoding_9561 chr3L - chr3L_184073_184317 chr3L_184073_184131;chr3L_184261_184317 chr3L_184132_184260 chr3L_184008_184072;chr3L_184318_184328 96.67 96.55 100.00 90.91 95.65 100.00 97.37 95.12 98.25 95.45 96.00 96.08 96.30 100.00 96.97 91.18 100.00 96.15 100.00 94.83 100.00 100.00 93.75 97.67 96.15 87.50 96.88 96.67 87.50 100.00 95.56 95.00 100.00 97.37 95.83 96.77 100.00 100.00 100.00 97.67 93.33 96.43 96.30 97.37 94.44 100.00 100.00 95.24 96.36 93.10 97.87 96.67 92.31 100.00 100.00 96.88 100.00 95.83 K intron_retention CG17278 chr3R - chr3R_16847307_16848392 chr3R_16847306_16847307;chr3R_16848392_16848393 chr3R_16847127_16847306;chr3R_16848393_16849968 1.15 0.68 0.89 1.03 1.92 0.64 2.21 1.63 1.24 1.69 1.58 0.90 0.54 0.79 0.85 0.70 0.96 8.38 1.09 1.33 1.88 3.02 0.81 0.95 1.15 0.75 1.00 4.12 1.12 1.35 0.00 1.69 4.27 1.38 1.63 1.47 1.14 0.00 0.97 1.64 1.39 0.70 0.91 0.65 2.26 1.87 1.17 3.43 1.13 1.80 1.81 1.05 1.35 1.85 1.12 0.57 1.05 2.76 K intron_retention Trs23 chr2L + chr2L_8686493_8686549 chr2L_8686492_8686493;chr2L_8686549_8686550 chr2L_8686210_8686492;chr2L_8686550_8687169 3.63 0.00 0.00 25.58 NA 0.00 0.00 8.70 6.06 7.69 0.00 3.92 0.00 3.85 0.00 4.17 0.00 0.00 0.00 2.11 0.00 16.67 8.57 7.69 5.88 0.00 8.11 30.43 6.06 0.00 3.45 4.08 9.26 2.38 0.00 6.67 3.77 0.00 4.00 4.35 17.24 1.72 0.00 5.26 7.89 8.77 3.28 14.81 4.17 5.77 3.49 3.33 0.00 1.72 0.00 0.00 3.45 5.26 K intron_retention cyc,RI_chr3L_19810268_19810326 chr3L - chr3L_19808596_19808854 chr3L_19808595_19808596;chr3L_19808854_19808855 chr3L_19808521_19808595;chr3L_19808855_19809028 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 0.00 K intron_retention CG2865 chrX - chrX_2176551_2186357 chrX_2176550_2176551;chrX_2186357_2186358 chrX_2176457_2176550;chrX_2186358_2187326 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA 11.76 NA NA NA NA NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA NA NA 0.00 NA NA NA K intron_retention I_chrX_20906749_20909772,Mgstl,noncoding_25026 chrX + chrX_20914329_20914706 chrX_20914328_20914329;chrX_20914706_20914707 chrX_20914086_20914328;chrX_20914707_20914747 0.45 0.00 0.88 1.16 0.00 0.00 0.39 0.00 0.45 1.79 0.00 0.93 0.74 0.97 0.40 1.17 0.00 1.03 0.00 0.00 1.20 0.00 1.14 0.00 0.00 0.53 0.70 2.60 0.70 0.00 0.00 0.00 0.64 0.65 0.00 0.00 0.00 0.61 1.35 0.76 0.00 0.25 0.49 0.77 0.00 0.56 1.01 0.26 0.00 1.26 0.54 0.70 1.46 0.00 0.00 0.34 0.66 0.00 K intron_retention I_chr3R_23749027_23749091,CG5508,E_chr3R_23755071_23758533 chr3R + chr3R_23755619_23755702 chr3R_23755618_23755619;chr3R_23755702_23755703 chr3R_23755129_23755618;chr3R_23755703_23755867 0.00 NA NA 6.67 NA 0.00 20.00 NA 5.26 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 20.83 0.00 0.00 NA NA 0.00 20.00 0.00 0.00 NA NA 0.00 NA NA 14.29 0.00 0.00 NA 3.57 NA 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K jcn_only_AA CG11055 chr2R + chr2R_16145258_16145691 chr2R_16145258_16145538 chr2R_16145189_16145257;chr2R_16145692_16148064 5.00 NA NA 10.81 0.00 0.00 25.93 0.00 8.33 NA 10.00 3.45 33.33 NA 5.00 NA NA NA NA 7.02 9.09 29.55 0.00 4.00 NA NA NA 2.86 0.00 3.45 NA NA 3.28 8.33 0.00 NA 8.33 NA 6.25 0.00 NA 7.89 NA 0.00 NA NA NA 2.33 15.91 NA 7.41 NA NA NA 19.23 NA NA 2.70 K alternative_acceptor CG8184,I_chrX_15620707_15620769 chrX + chrX_15609611_15609693 chrX_15609611_15609690 chrX_15609339_15609610;chrX_15609694_15610187 27.84 31.25 30.00 18.18 33.33 52.38 24.00 30.00 30.00 22.22 18.18 28.30 28.57 26.09 21.05 22.73 26.92 27.27 27.27 18.92 25.00 25.45 28.17 27.91 31.71 34.48 29.79 25.00 26.09 25.00 30.00 NA 24.24 22.73 29.03 22.22 29.23 23.68 28.85 33.33 NA 34.04 28.57 27.03 NA 30.77 NA 29.41 33.33 NA 27.78 22.73 35.71 NA 26.47 NA NA NA N cassette RpS5a,I_chrX_17037805_17040830,I_chrX_17038786_17039048,I_chrX_17041053_17041104,I_chrX_17041234_17041901,I_chrX_17041234_17041720,RI_chrX_17041234_17041750,RI_chrX_17041234_17041760,I_chrX_17041234_17041832,I_chrX_17041234_17041844 chrX - chrX_17039166_17042236 chrX_17039166_17040830;chrX_17041234_17042236 chrX_17040831_17041233 chrX_17039049_17039165;chrX_17042237_17042336 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.69 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG34449,I_chrX_9222628_9227416,RI_chrX_9232665_9233022,RI_chrX_9249209_9250033,RI_chrX_9249212_9250033,RI_chrX_9249212_9250244 chrX - chrX_9227656_9231026 chrX_9227656_9230957 chrX_9227417_9227655;chrX_9231027_9231270 85.19 82.05 93.10 93.33 85.71 85.19 90.00 90.00 87.27 79.25 68.97 89.58 87.50 95.00 91.43 90.48 85.19 96.55 86.96 88.16 96.00 71.67 80.36 79.10 80.00 89.66 81.13 82.00 73.33 83.02 96.67 85.19 88.30 82.98 80.00 85.45 80.65 78.95 84.91 69.01 79.41 86.96 91.30 79.31 86.27 76.47 78.95 80.68 83.93 86.67 79.45 85.71 91.18 76.92 82.05 78.79 95.83 91.84 K jcn_only_AA Cf2,I_chr2L_4882802_4882864 chr2L - chr2L_4882366_4882888 chr2L_4882493_4882888 chr2L_4882889_4882964;chr2L_4881215_4882365 95.84 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 96.43 NA NA 90.62 NA NA NA NA NA NA 89.74 NA NA NA NA NA NA NA 96.88 NA NA NA NA NA NA NA NA NA 95.24 K intron_retention CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4991263_4991384 chr2L_4991262_4991263;chr2L_4991384_4991385 chr2L_4991145_4991262;chr2L_4991385_4991392 40.00 NA NA NA NA NA NA 61.54 NA NA NA 69.23 NA NA NA NA 56.25 NA NA NA NA 26.67 NA 35.71 NA NA 63.16 88.89 21.43 NA NA NA 37.50 63.64 NA 20.00 NA NA NA 40.00 NA 87.50 NA NA NA NA NA 33.33 NA NA NA NA NA NA NA 36.36 NA NA K alternative_acceptor I_chr2L_10341933_10342155,CG5025 chr2L + chr2L_10343605_10343685 chr2L_10343605_10343658 chr2L_10343538_10343604;chr2L_10343686_10343750 100.00 100.00 100.00 100.00 100.00 91.67 97.06 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 98.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 85.71 100.00 100.00 100.00 100.00 100.00 K intron_retention CG4662 chr3R + chr3R_15673358_15675733 chr3R_15673357_15673358;chr3R_15675733_15675734 chr3R_15673115_15673357;chr3R_15675734_15675875 19.62 11.76 28.57 28.57 18.18 11.11 44.44 33.33 23.08 21.43 21.05 21.43 40.00 NA 36.36 29.41 22.22 23.08 23.53 45.45 42.86 18.75 14.81 12.50 NA NA 25.93 11.11 26.32 11.11 30.77 NA 20.00 20.00 0.00 31.25 13.33 19.05 8.00 8.33 20.00 14.29 0.00 23.08 NA 14.29 23.81 0.00 18.92 10.71 19.23 0.00 11.76 6.67 24.00 13.04 10.53 11.76 K cassette CG17715,RI_chr2L_22742106_22742215,I_chr2L_22742106_22746918 chr2L + chr2L_22742106_22746918 chr2L_22742106_22742160;chr2L_22742365_22746918 chr2L_22742161_22742364 chr2L_22742093_22742105;chr2L_22746919_22746924 100.00 98.72 100.00 99.22 100.00 100.00 100.00 100.00 100.00 98.21 100.00 99.25 100.00 98.65 100.00 100.00 100.00 100.00 100.00 99.42 100.00 98.36 100.00 98.82 98.08 93.44 100.00 100.00 97.78 98.65 99.26 98.57 100.00 100.00 98.31 100.00 100.00 100.00 100.00 100.00 93.85 99.37 98.44 97.65 100.00 99.14 100.00 99.18 100.00 99.07 100.00 98.68 98.31 98.39 100.00 98.63 100.00 100.00 K alternative_acceptor eIF5,noncoding_24049,EI_chrX_15885411_15885854,RI_chrX_15885416_15885611 chrX - chrX_15885411_15885854 chrX_15885416_15885854 chrX_15885855_15885912;chrX_15885316_15885410 90.45 NA 100.00 NA NA NA 91.67 90.91 90.91 NA NA 92.31 NA 100.00 NA 85.19 NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA 84.62 NA NA 87.50 NA 85.71 NA NA NA NA NA NA NA NA NA 100.00 NA NA 88.89 NA NA NA NA NA NA NA NA 88.89 K jcn_only_AA CG14997 chr3L + chr3L_4240892_4240985 chr3L_4240892_4240951 chr3L_4240786_4240891;chr3L_4240986_4241176 100.00 100.00 NA 96.77 NA NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA NA NA 100.00 NA 100.00 96.43 100.00 NA 95.65 NA NA NA NA 85.00 NA 100.00 100.00 NA 91.67 96.88 100.00 94.12 100.00 95.24 96.30 NA 100.00 NA 100.00 97.56 100.00 97.83 96.00 NA NA 100.00 100.00 100.00 100.00 97.73 100.00 K alternative_acceptor Klc,I_chr3L_12741779_12743062,I_chr3L_12741783_12742943,I_chr3L_12741838_12743062 chr3L - chr3L_12741779_12743062;chr3L_12741838_12743062 chr3L_12741783_12743062 chr3L_12743063_12743083;chr3L_12741738_12741778 96.23 95.92 95.38 95.05 97.78 100.00 93.60 98.94 94.61 95.00 96.43 94.44 98.41 98.08 98.04 92.31 94.34 95.74 95.45 94.03 98.31 98.44 97.01 97.50 94.12 88.46 94.12 100.00 94.12 90.62 94.83 96.15 90.91 96.97 100.00 97.50 100.00 96.97 95.65 97.78 100.00 96.23 97.78 98.28 92.00 98.21 93.75 88.89 93.68 95.56 98.33 97.87 100.00 96.15 100.00 98.04 95.24 96.97 N alternative_donor RI_chrX_8608147_8608508,I_chrX_8608169_8608438,l(1)G0020 chrX - chrX_8610980_8611119 chrX_8610980_8611115 chrX_8610747_8610979;chrX_8611120_8612089 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA 0.00 NA 9.26 NA 0.00 14.89 13.51 0.00 0.00 0.00 0.00 0.00 0.00 NA 12.50 12.20 0.00 0.00 0.00 0.00 0.00 14.29 9.52 8.33 13.16 NA 0.00 9.09 8.47 0.00 0.00 10.53 0.00 11.43 0.00 0.00 0.00 NA 0.00 10.34 9.43 K jcn_only_AA CG31075,I_chr3R_22814057_22814129 chr3R - chr3R_22813061_22814129 chr3R_22814057_22814129 chr3R_22814130_22814229;chr3R_22812956_22813060 0.33 0.00 0.59 2.45 0.00 0.70 0.00 0.32 0.88 0.69 0.79 0.30 0.78 0.62 0.00 0.33 0.00 0.00 0.68 0.25 0.82 0.00 0.56 0.36 0.00 0.00 0.32 1.08 0.00 0.00 0.91 0.88 0.00 0.42 1.01 0.71 0.46 1.01 0.41 0.26 0.00 0.34 0.00 0.34 1.41 0.00 0.47 0.00 0.00 0.59 0.68 1.36 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Osi19 chr3R + chr3R_2161921_2162001 chr3R_2161920_2161921;chr3R_2162001_2162002 chr3R_2161644_2161920;chr3R_2162002_2162010 0.00 NA NA 0.00 NA 0.00 NA 0.00 4.55 NA NA 0.00 NA 0.00 NA NA NA NA NA 0.00 NA 4.76 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 7.14 NA 0.00 6.25 NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA NA NA NA 0.00 NA NA NA K jcn_only_AD skpA chrX + chrX_550433_551131;chrX_550498_551131;chrX_550818_551131;chrX_550638_551131;chrX_550774_551131;chrX_550523_551131 chrX_550654_551131 chrX_551132_551937;chrX_550426_550432 0.28 0.00 1.32 1.61 0.00 2.16 0.37 0.00 0.00 0.00 1.19 1.19 0.55 0.68 0.00 1.08 0.00 3.28 0.00 0.61 0.00 0.00 0.43 1.38 0.00 0.00 1.52 1.20 1.14 0.68 0.00 0.00 0.00 0.45 1.11 0.00 0.28 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.74 1.02 0.59 0.78 0.76 0.54 0.00 0.00 2.21 0.00 0.00 0.00 0.00 0.44 K alternative_donor Trx-2,I_chr2L_9613459_9615301,I_chr2L_9613592_9615301,E_chr2L_9615344_9615833,I_chr2L_9615252_9615301 chr2L + chr2L_9613376_9615301;chr2L_9613541_9615301 chr2L_9615252_9615301 chr2L_9615302_9615343;chr2L_9613359_9613375 1.60 0.59 2.20 1.83 2.05 1.42 3.03 2.59 1.84 0.87 1.55 1.85 2.94 2.37 1.88 1.86 1.80 2.13 1.86 1.93 1.35 2.91 0.72 0.88 0.83 1.48 1.12 3.32 1.68 1.05 1.66 1.48 3.05 2.28 1.44 1.27 0.50 0.43 0.55 1.03 1.62 2.14 2.42 0.48 1.94 1.30 0.84 1.87 1.71 0.74 1.10 1.33 0.68 0.61 1.60 0.34 0.64 1.99 K alternative_donor I_chrX_4000307_4003527,CG4857 chrX + chrX_4014458_4014534 chrX_4014474_4014534 chrX_4014535_4014601;chrX_4014329_4014457 1.48 0.00 0.00 1.09 3.12 5.00 3.77 0.00 3.80 NA 0.00 0.00 2.33 0.00 1.92 1.59 0.00 2.13 1.89 2.67 0.00 5.56 1.54 4.44 4.17 1.96 4.65 2.94 3.23 0.00 1.39 0.00 0.00 4.44 0.00 2.13 0.00 0.00 0.00 1.41 0.00 2.33 1.96 0.00 0.00 4.55 0.00 0.00 3.96 5.26 0.00 2.70 NA 0.00 0.00 3.85 NA 0.00 N intron_retention CG6199 chr3L - chr3L_11196773_11197305 chr3L_11196772_11196773;chr3L_11197305_11197306 chr3L_11196633_11196772;chr3L_11197306_11197316 0.00 0.00 8.33 0.00 0.00 0.00 0.00 6.45 0.00 NA 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 5.41 0.00 0.00 6.90 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 5.13 0.00 0.00 2.78 0.00 0.00 NA NA NA 4.35 0.00 NA NA N cassette Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11837971_11840340 chr2R_11837971_11838672;chr2R_11838972_11840340 chr2R_11838673_11838971 chr2R_11837919_11837970;chr2R_11840341_11840725 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.33 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Mnf,RI_chr3L_11108913_11109028 chr3L - chr3L_11111166_11113709;chr3L_11111166_11113381 chr3L_11111166_11112264 chr3L_11110405_11111165;chr3L_11113710_11113829 0.00 5.00 2.33 0.00 0.00 0.00 0.00 2.67 1.79 NA 3.33 0.00 0.00 0.00 0.00 0.00 3.57 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 1.43 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.17 2.08 NA 0.00 3.85 0.00 3.12 0.00 2.78 0.00 NA 0.00 4.55 0.00 0.00 0.00 2.78 K cassette zormin,I_chr3L_2128755_2129053,RI_chr3L_2139943_2140057 chr3L - chr3L_2126671_2129053 chr3L_2126671_2127077;chr3L_2128761_2129053 chr3L_2127078_2128760 chr3L_2125239_2126670;chr3L_2129054_2129153 2.90 4.76 0.00 6.25 NA 0.00 5.56 0.00 3.03 5.88 NA 2.44 NA 4.35 0.00 7.41 0.00 0.00 0.00 10.81 0.00 10.81 5.13 2.70 5.56 0.00 2.86 5.56 3.85 3.45 4.35 0.00 14.04 2.86 3.23 15.15 4.88 0.00 2.94 1.18 0.00 2.78 0.00 0.00 2.13 2.38 3.45 2.82 2.56 6.45 2.33 0.00 4.55 5.88 4.76 4.17 4.35 2.22 K intron_retention E(Pc) chr2R + chr2R_7343261_7343324 chr2R_7343260_7343261;chr2R_7343324_7343325 chr2R_7343093_7343260;chr2R_7343325_7343506 0.00 0.00 0.00 0.00 0.00 0.00 6.67 8.33 1.69 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 17.78 0.00 0.00 12.50 0.00 8.33 12.00 12.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 5.00 NA 5.13 0.00 10.53 NA 0.00 0.00 NA 0.00 K alternative_donor eIF-5A,I_chr2R_19945430_19946454,I_chr2R_19945576_19946006,I_chr2R_19945723_19946006,I_chr2R_19945783_19946006,I_chr2R_19945852_19946006,I_chr2R_19945875_19946006,I_chr2R_19945921_19946006,I_chr2R_19946299_19946454,I_chr2R_19946657_19946733,I_chr2R_19948517_19948682 chr2R + chr2R_19945576_19946006;chr2R_19945921_19946006;chr2R_19945875_19946006;chr2R_19945430_19946006 chr2R_19945426_19946006 chr2R_19946007_19946106;chr2R_19945343_19945425 7.11 7.13 7.26 8.18 6.21 6.59 5.81 7.47 5.59 7.80 5.03 7.18 6.28 7.24 7.11 5.55 5.94 7.21 6.84 7.35 7.20 11.45 5.34 4.59 5.66 8.25 7.14 7.00 9.71 12.33 7.45 8.32 11.25 6.87 8.33 8.58 5.15 5.05 5.96 5.98 8.26 6.42 6.42 5.65 8.01 7.39 6.03 8.75 6.55 5.44 7.47 4.11 7.70 7.48 6.34 5.34 5.69 9.84 K multi_cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27761114_27762991,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27707594_27801169 chr3R_27707594_27747354;chr3R_27747397_27757793;chr3R_27758337_27784756;chr3R_27784850_27798223;chr3R_27798276_27801169 chr3R_27747355_27747396;chr3R_27757794_27758336;chr3R_27784757_27784849;chr3R_27798224_27798275 chr3R_27707494_27707593;chr3R_27801170_27801219 83.34 NA NA NA NA NA NA NA 100.00 NA NA 66.67 NA 100.00 100.00 NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA 100.00 NA 66.67 NA 66.67 NA NA NA NA 50.00 NA NA NA NA NA NA NA NA 66.67 K alternative_donor cnn,I_chr2R_9333096_9336723,I_chr2R_9333096_9336812,RI_chr2R_9334834_9336719,I_chr2R_9347031_9370659 chr2R - chr2R_9334834_9336812;chr2R_9334834_9336501;chr2R_9334834_9336719 chr2R_9334834_9336723 chr2R_9334744_9334833;chr2R_9336813_9336819 9.09 7.69 6.67 7.14 11.11 9.09 12.20 6.45 0.00 10.53 6.67 10.53 4.76 11.76 15.38 3.03 16.67 14.29 11.11 15.56 16.67 8.11 8.82 5.56 5.26 0.00 2.94 2.86 2.56 9.09 17.39 9.09 5.26 3.12 7.69 11.11 11.11 9.09 7.69 17.39 9.52 16.00 23.08 6.82 27.27 3.85 12.50 6.67 12.50 11.11 4.35 17.65 0.00 11.11 21.05 8.33 10.00 10.53 K jcn_only_AD key,I_chr2R_20674567_20674813,I_chr2R_20674654_20674897,RI_chr2R_20676692_20676888 chr2R - chr2R_20674654_20674897 chr2R_20674654_20674813 chr2R_20674554_20674653;chr2R_20674898_20674903 98.51 97.14 93.10 93.00 94.87 95.35 98.88 98.96 95.24 NA 90.91 94.69 92.59 96.23 93.75 95.36 100.00 90.00 98.21 93.65 100.00 99.00 100.00 100.00 98.00 94.87 100.00 95.83 NA 98.28 92.59 97.78 100.00 100.00 100.00 100.00 100.00 100.00 98.53 100.00 96.67 94.90 100.00 98.88 94.29 100.00 100.00 100.00 97.00 100.00 100.00 100.00 96.97 98.51 98.18 100.00 100.00 98.59 K jcn_only_AA CG8526 chr3R + chr3R_5627575_5627638 chr3R_5627575_5627635 chr3R_5627506_5627574;chr3R_5627639_5627704 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA 96.77 100.00 NA NA NA 100.00 NA 100.00 97.14 NA NA 96.15 100.00 NA NA NA NA NA NA NA NA NA 95.83 NA NA NA 85.00 NA NA NA 96.15 NA NA NA NA NA NA 100.00 NA NA NA NA NA 95.24 NA 100.00 NA K intron_retention Arf51F,I_chr2R_11210733_11210953 chr2R + chr2R_11210733_11210953 chr2R_11210732_11210733;chr2R_11210953_11210954 chr2R_11210633_11210732;chr2R_11210954_11211053 90.91 NA NA 90.91 NA NA 95.24 90.91 86.67 NA NA 96.77 NA NA NA NA NA NA NA NA NA 100.00 70.00 NA NA 100.00 100.00 NA 88.89 NA NA NA NA 92.31 NA 96.77 NA NA NA 90.00 90.91 83.33 88.89 NA NA NA NA NA 77.78 NA NA NA NA NA 87.50 NA NA NA K alternative_acceptor CG7381,I_chr3R_8796541_8802728 chr3R - chr3R_8795968_8796044 chr3R_8795971_8796044 chr3R_8796045_8796162;chr3R_8795353_8795967 90.48 91.67 100.00 93.33 92.31 NA 100.00 90.48 88.57 NA 100.00 84.21 87.50 100.00 91.67 91.67 88.89 88.89 87.50 90.91 81.82 93.33 NA NA NA NA NA NA NA NA 93.75 88.89 91.67 93.75 88.89 NA 88.89 NA 90.00 100.00 NA 84.62 90.91 NA NA 91.67 NA 77.78 90.48 NA 83.33 NA NA 88.89 83.33 NA NA NA K cassette CG1358,I_chr2R_3485171_3489936 chr2R - chr2R_3485171_3489936 chr2R_3485171_3485720;chr2R_3485863_3489936 chr2R_3485721_3485862 chr2R_3485071_3485170;chr2R_3489937_3490036 97.83 95.77 97.50 76.67 98.21 97.56 97.92 98.18 96.85 97.83 97.50 95.83 91.67 97.62 98.18 100.00 100.00 100.00 97.78 99.07 100.00 88.64 98.91 96.15 97.92 100.00 98.48 94.74 82.50 98.36 96.72 98.08 91.30 97.22 97.92 97.87 95.93 95.00 96.70 94.74 97.96 99.09 100.00 98.41 96.88 98.72 96.88 94.52 97.25 94.74 95.92 100.00 98.67 98.41 95.95 98.51 98.81 98.67 K alternative_donor Npc1a chr2L - chr2L_10218890_10220796;chr2L_10218890_10220834;chr2L_10218890_10220692 chr2L_10218890_10220868 chr2L_10218779_10218889;chr2L_10220869_10220873 13.64 24.00 22.22 13.64 18.75 18.75 9.68 15.38 10.77 23.08 10.00 10.00 23.53 9.52 28.00 4.26 16.67 14.81 13.33 9.52 11.76 11.11 16.67 14.29 18.18 18.75 5.56 12.50 13.64 8.70 3.57 0.00 17.39 12.07 6.25 5.00 22.22 12.50 23.08 16.22 18.18 12.73 13.04 15.15 11.11 12.50 28.57 9.52 15.00 16.67 9.09 25.00 12.50 25.00 15.38 27.27 40.00 4.17 K jcn_only_AD Ucp4A chrX + chrX_17739458_17739522;chrX_17739394_17739522;chrX_17739454_17739522 chrX_17739432_17739522 chrX_17739523_17739558;chrX_17739094_17739393 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K intron_retention faf,RI_chr3R_27603474_27603893,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27610007_27610064 chr3R_27610006_27610007;chr3R_27610064_27610065 chr3R_27608641_27610006;chr3R_27610065_27610488 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 2.24 0.00 0.00 1.03 0.00 0.00 2.56 0.00 0.00 0.00 1.64 1.09 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 1.04 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 NA K jcn_only_AD CG4699 chr3R + chr3R_11624200_11624445;chr3R_11624133_11624445;chr3R_11624190_11624445 chr3R_11624127_11624445 chr3R_11624446_11624758;chr3R_11623809_11624126 25.00 30.00 35.00 30.77 38.10 NA 14.29 NA 23.08 16.22 NA 37.14 NA NA NA NA NA NA NA 40.48 NA 22.86 14.29 21.88 20.59 31.82 18.52 29.82 35.71 33.33 30.00 15.79 39.06 33.33 25.00 29.31 17.14 15.09 15.09 11.11 14.29 39.22 NA 23.81 55.88 25.00 14.63 43.86 10.87 18.00 16.67 8.00 26.67 24.14 42.42 28.12 26.09 50.00 K intron_retention RhoGDI chr3L + chr3L_19921875_19923920 chr3L_19921874_19921875;chr3L_19923920_19923921 chr3L_19921868_19921874;chr3L_19923921_19924114 100.00 90.91 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 97.62 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 NA K intron_retention deltaCOP,I_chrX_1754047_1754089,I_chrX_1755132_1755191,E_chrX_1755139_1755188,I_chrX_1757755_1757801 chrX - chrX_1755519_1755627 chrX_1755518_1755519;chrX_1755627_1755628 chrX_1755479_1755518;chrX_1755628_1755707 0.00 0.00 0.00 1.10 0.00 0.00 2.13 0.47 0.00 3.12 1.54 0.47 0.00 0.00 1.35 0.00 0.00 0.00 0.00 1.05 0.00 2.90 0.00 0.00 1.09 0.00 0.61 1.85 5.10 0.00 0.65 0.00 0.00 0.56 0.00 1.83 0.00 0.00 1.18 1.32 2.27 1.20 0.00 0.79 0.00 1.28 0.00 3.33 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Rheb,I_chr3R_1395050_1395121,CRMP chr3R + chr3R_1394994_1395121 chr3R_1395050_1395121 chr3R_1395122_1395193;chr3R_1394950_1394993 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.96 1.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.78 0.00 0.00 1.80 0.00 3.80 1.14 0.86 0.00 0.69 0.65 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.51 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.67 K intron_retention bif,I_chrX_11581793_11583233 chrX + chrX_11573323_11574876 chrX_11573322_11573323;chrX_11574876_11574877 chrX_11573237_11573322;chrX_11574877_11575147 16.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG6340,I_chrX_15402291_15403750 chrX + chrX_15378926_15379154 chrX_15378926_15378979 chrX_15378907_15378925;chrX_15379155_15379301 60.00 83.33 NA 71.43 NA NA NA NA 80.00 80.00 NA 66.67 NA NA NA NA NA NA NA 55.56 NA 69.23 63.64 60.00 NA NA 57.14 57.14 NA 55.56 NA 41.67 50.00 NA 50.00 NA 66.67 57.14 83.33 40.00 66.67 63.64 NA 83.33 62.50 50.00 83.33 41.67 NA 60.00 55.56 NA 71.43 NA NA 57.14 50.00 41.18 K intron_retention CG10103,noncoding_10997 chr3L - chr3L_6747594_6747844 chr3L_6747593_6747594;chr3L_6747844_6747845 chr3L_6747493_6747593;chr3L_6747845_6747905 5.97 9.26 8.33 10.00 10.53 2.27 19.23 7.14 11.36 0.00 4.65 4.30 12.50 14.29 6.56 13.33 7.14 11.63 7.35 9.09 4.65 1.83 5.88 7.04 5.71 0.00 1.69 6.38 5.00 5.08 7.69 0.00 0.00 14.08 8.00 0.00 7.81 6.82 0.00 5.19 3.70 5.22 11.76 8.54 2.27 4.58 4.62 5.26 10.53 2.22 8.86 7.32 3.45 0.00 8.70 5.97 2.90 3.77 K alternative_acceptor l(2)NC136,I_chr2R_1545723_1546024 chr2R - chr2R_1545081_1545147;chr2R_1545087_1545147 chr2R_1545003_1545147 chr2R_1545148_1545722;chr2R_1544877_1545002 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 1.89 1.82 0.00 2.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 2.38 3.57 2.38 0.00 0.00 1.20 1.82 0.00 0.00 0.00 3.12 0.00 0.00 0.00 3.23 K jcn_only_AD exd chrX + chrX_15886650_15887504 chrX_15886695_15887504 chrX_15887505_15887806;chrX_15886529_15886649 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.46 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 99.40 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention pes chr2L - chr2L_7991620_7993840 chr2L_7991619_7991620;chr2L_7993840_7993841 chr2L_7991358_7991619;chr2L_7993841_7994308 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.67 0.31 1.28 0.00 0.76 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.51 0.00 0.00 1.22 0.88 0.00 0.71 0.00 1.90 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.63 0.00 0.00 0.00 0.00 0.33 0.00 1.46 1.33 0.00 0.00 0.00 1.35 0.00 0.00 K jcn_only_AD CG9855,RI_chr3R_222522_222581,RI_chr3R_222525_222604,I_chr3R_223384_223429 chr3R - chr3R_222525_222604 chr3R_222525_222581 chr3R_222457_222524;chr3R_222605_222650 100.00 98.33 100.00 98.90 100.00 97.73 100.00 100.00 99.01 100.00 100.00 100.00 97.50 100.00 98.41 98.53 100.00 100.00 100.00 100.00 100.00 98.21 100.00 100.00 94.34 100.00 98.77 100.00 99.03 100.00 100.00 98.75 97.85 98.61 97.87 100.00 98.59 98.46 100.00 98.37 100.00 98.26 100.00 100.00 100.00 100.00 97.78 99.40 98.96 100.00 100.00 98.11 98.65 100.00 100.00 98.78 100.00 98.73 K jcn_only_AD CG1399,I_chr2R_3574133_3574191 chr2R - chr2R_3565240_3565502;chr2R_3565240_3565323;chr2R_3565240_3565310;chr2R_3565240_3566074;chr2R_3565240_3565403 chr2R_3565240_3565374 chr2R_3564840_3565239 17.78 18.18 0.00 30.00 6.45 12.50 21.54 23.91 9.09 8.16 15.09 17.07 4.76 25.81 10.81 16.67 6.67 30.56 15.38 17.95 22.64 10.34 42.50 20.00 22.22 15.38 26.67 11.43 26.79 18.64 21.05 17.78 20.29 17.31 18.42 7.69 7.55 9.09 28.26 10.42 16.95 18.18 0.00 22.22 17.95 16.95 14.29 13.73 27.27 10.87 31.15 20.51 29.63 21.95 11.36 20.00 26.19 8.11 K jcn_only_AD vig chr2L - chr2L_15067690_15067915;chr2L_15067690_15067952;chr2L_15067690_15067995;chr2L_15067690_15067868;chr2L_15067690_15068029 chr2L_15067690_15067999 chr2L_15066937_15067689;chr2L_15068030_15068031 0.00 0.89 0.00 0.00 0.00 0.91 0.00 0.48 0.27 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.72 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 2.06 0.00 0.00 0.00 0.00 0.00 1.45 0.37 1.35 0.00 0.00 0.55 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 K cassette Fhos,CE_chr3L_8759730_8775647,I_chr3L_8779538_8779726 chr3L + chr3L_8759730_8775647 chr3L_8759730_8770096;chr3L_8770418_8775647 chr3L_8770097_8770417 chr3L_8759630_8759729;chr3L_8775648_8775747 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 92.00 95.45 100.00 100.00 100.00 100.00 94.12 90.91 94.74 83.33 87.50 94.44 100.00 100.00 100.00 100.00 100.00 94.74 95.83 100.00 90.91 100.00 95.65 94.74 100.00 100.00 92.11 100.00 85.71 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 K intron_retention CG17760 chr2R + chr2R_8513642_8514257 chr2R_8513641_8513642;chr2R_8514257_8514258 chr2R_8513634_8513641;chr2R_8514258_8514421 61.25 63.16 59.09 50.00 61.54 70.59 58.21 52.83 56.04 NA 78.95 51.22 80.95 52.94 55.56 61.40 60.00 80.00 66.67 55.26 76.47 40.00 76.47 63.16 81.82 64.29 71.43 NA NA NA 66.67 76.92 56.25 60.00 42.11 55.00 38.46 NA NA 78.26 38.46 53.06 38.10 43.75 69.23 55.00 42.86 83.33 64.52 62.50 62.50 61.11 NA 66.67 65.22 76.47 60.00 57.14 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2816013 chr2R_2813804_2814174;chr2R_2814327_2814894;chr2R_2815654_2816013 chr2R_2814175_2814326;chr2R_2814895_2815653 chr2R_2813704_2813803;chr2R_2816014_2816113 66.66 NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Cyp6u1,RI_chr2R_2860235_2860315,CG30157 chr2R - chr2R_2861506_2862451 chr2R_2861505_2861506;chr2R_2862451_2862452 chr2R_2861451_2861505;chr2R_2862452_2862496 18.35 NA NA 15.38 NA NA NA NA 23.08 NA NA NA NA NA NA NA NA NA NA 19.05 NA 16.67 28.57 16.67 NA NA NA NA NA NA NA NA NA NA NA NA 23.08 NA NA NA NA NA NA NA NA NA NA NA NA NA 17.65 NA NA NA NA NA NA NA K intron_retention dlg1,I_chrX_11298230_11299306 chrX + chrX_11290605_11291857 chrX_11290604_11290605;chrX_11291857_11291858 chrX_11289887_11290604;chrX_11291858_11291945 0.00 0.00 0.00 0.00 2.41 0.00 0.00 1.74 0.00 0.00 0.00 0.00 0.00 0.00 2.97 0.00 6.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG30109,CG30108,I_chr2R_13557316_13557647 chr2R + chr2R_13557138_13557647 chr2R_13557138_13557191 chr2R_13556976_13557137;chr2R_13557648_13557747 90.91 92.86 94.12 95.83 86.67 94.74 93.75 78.38 91.84 93.33 91.67 89.74 94.74 94.44 95.00 96.77 100.00 80.95 82.61 89.47 93.75 100.00 78.26 85.71 83.33 92.31 90.91 100.00 90.91 73.33 51.43 94.12 91.30 88.24 94.12 71.43 84.21 92.86 95.45 78.12 70.37 88.89 89.47 82.35 90.91 75.86 95.00 66.67 94.59 80.77 92.31 84.21 100.00 94.44 81.82 86.36 90.62 64.10 K intron_retention CG1600,I_chr2R_3415482_3418090 chr2R - chr2R_3414578_3414644 chr2R_3414577_3414578;chr2R_3414644_3414645 chr2R_3413623_3414577;chr2R_3414645_3415481 1.10 0.00 0.00 2.27 1.00 1.02 0.00 1.54 1.76 1.52 1.94 2.86 0.00 1.10 2.36 2.04 0.00 0.00 0.00 0.80 0.95 0.72 0.00 0.00 0.00 0.00 2.23 8.08 2.73 0.00 2.68 0.00 0.73 1.35 1.06 2.00 2.30 1.01 1.21 2.93 2.50 2.30 0.00 0.52 0.68 2.08 2.73 2.78 0.56 1.99 1.18 2.35 0.56 0.00 0.89 1.38 1.20 2.48 K cassette Oatp30B,I_chr2L_9521404_9523162,I_chr2L_9521441_9533513,RI_chr2L_9521477_9523162,I_chr2L_9533752_9534868 chr2L + chr2L_9521496_9533513;chr2L_9521441_9533513 chr2L_9521496_9523162,chr2L_9521441_9523162;chr2L_9523344_9533513 chr2L_9523163_9523343 chr2L_9521431_9521440;chr2L_9533514_9533613 100.00 NA 85.71 100.00 NA NA 100.00 90.00 100.00 NA NA 80.00 100.00 100.00 83.33 100.00 100.00 NA 100.00 85.71 NA 85.71 100.00 NA NA NA NA NA NA 100.00 NA NA 100.00 87.50 NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA 91.67 100.00 NA NA NA NA NA 100.00 NA NA NA K intron_retention I_chr2R_19265701_19270570,CG30414,CG3530,CG3520 chr2R - chr2R_19272571_19272635 chr2R_19272570_19272571;chr2R_19272635_19272636 chr2R_19272528_19272570;chr2R_19272636_19272922 9.52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA 4.76 0.00 K multi_cassette drpr,I_chr3L_1718097_1718705,I_chr3L_1718154_1723579,I_chr3L_1720385_1723579,CG18171 chr3L - chr3L_1718154_1723579 chr3L_1718154_1718705;chr3L_1719746_1719922;chr3L_1720170_1723579 chr3L_1718706_1719745;chr3L_1719923_1720169 chr3L_1718054_1718153;chr3L_1723580_1723679 99.72 99.69 100.00 99.38 99.63 100.00 99.31 99.36 99.53 100.00 99.47 99.72 98.47 99.56 100.00 99.48 100.00 99.62 99.61 100.00 100.00 98.88 99.71 100.00 99.46 99.63 99.56 100.00 99.55 99.62 99.36 100.00 100.00 99.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.85 100.00 100.00 99.55 99.57 99.57 99.26 99.81 100.00 98.80 99.25 100.00 100.00 100.00 100.00 99.63 99.46 K alternative_donor CG7028,I_chr3L_207277_208117 chr3L - chr3L_210400_210475 chr3L_210400_210453 chr3L_209784_210399;chr3L_210476_210738 56.39 64.00 65.00 84.00 56.25 77.78 70.00 64.00 60.53 50.00 NA 63.33 66.67 68.75 65.00 85.71 46.15 75.00 66.67 60.38 77.78 52.00 52.50 54.55 33.33 53.85 74.07 76.47 45.95 55.17 28.26 42.86 65.52 50.00 58.82 28.57 53.49 50.00 38.46 54.55 47.06 44.44 69.23 56.52 29.03 58.33 50.00 54.55 53.33 65.00 54.29 71.43 33.33 50.00 58.82 50.00 58.82 61.29 K alternative_last_exon Spargel,RI_chr3R_252723_254271,noncoding_14534 chr3R - chr3R_252723_254696 chr3R_254346_254696 chr3R_252604_252722 chr3R_254272_254345 chr3R_254697_254925 38.10 48.48 53.12 42.22 71.43 36.84 34.88 39.66 36.84 36.36 69.57 38.33 53.33 41.94 32.35 33.96 39.13 46.88 50.00 80.33 65.00 25.64 37.50 36.96 36.84 27.59 30.23 39.02 33.33 27.78 44.44 18.18 32.61 42.47 52.94 21.88 43.90 36.67 40.00 41.86 33.33 38.46 51.52 27.03 53.33 34.78 21.43 34.04 38.36 40.91 32.56 46.67 28.57 25.00 52.17 38.10 20.00 26.47 K intron_retention Vha100-1,I_chr3R_24958227_24960770,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24959684_24960278 chr3R_24959683_24959684;chr3R_24960278_24960279 chr3R_24959583_24959683;chr3R_24960279_24960320 31.01 NA NA 31.25 NA NA 42.11 NA 30.00 NA NA 12.70 NA NA 16.67 NA NA NA NA 50.00 35.71 66.67 23.08 30.77 50.00 NA NA NA NA NA 33.33 NA NA 40.00 NA 26.32 22.22 NA 19.05 NA NA 35.29 NA NA NA 46.15 NA NA 27.27 30.77 30.00 60.00 NA NA 30.77 NA 33.33 NA K alternative_acceptor CG32344,RI_chr3L_321550_321914,I_chr3L_326540_326703,RI_chr3L_326725_326866 chr3L - chr3L_321364_321914;chr3L_321550_321914 chr3L_321361_321914 chr3L_321915_322014;chr3L_321242_321360 7.14 0.00 8.33 5.56 0.00 12.50 0.00 5.56 5.00 NA 0.00 8.00 7.69 7.69 5.26 13.04 NA 11.11 7.14 5.26 0.00 12.50 9.09 6.67 NA 8.33 7.69 12.50 14.29 14.29 7.69 9.09 5.88 10.00 16.67 0.00 11.11 0.00 30.00 7.14 5.26 9.52 0.00 NA 5.56 6.67 8.33 6.25 4.76 0.00 6.25 12.50 7.14 0.00 6.67 11.11 3.70 8.57 K intron_retention CG13163,RI_chr2R_8209160_8209216 chr2R + chr2R_8209156_8209216 chr2R_8209155_8209156;chr2R_8209216_8209217 chr2R_8209060_8209155;chr2R_8209217_8209316 0.00 NA NA 0.00 NA NA 0.00 0.00 3.12 NA NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 NA NA 9.52 NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA 0.00 NA K intron_retention klett chrX - chrX_21499782_21499946 chrX_21499781_21499782;chrX_21499946_21499947 chrX_21499389_21499781;chrX_21499947_21499978 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 97.44 91.67 100.00 100.00 94.12 89.66 96.67 96.15 100.00 100.00 95.24 100.00 100.00 100.00 100.00 97.30 100.00 100.00 97.22 100.00 100.00 100.00 100.00 96.15 100.00 96.67 100.00 100.00 K jcn_only_AD CG32803,I_chrX_1795648_1795700,RI_chrX_1795648_1795745,I_chrX_1798310_1798525,I_chrX_1798315_1798577 chrX - chrX_1795648_1795832 chrX_1795648_1795745 chrX_1795548_1795647;chrX_1795833_1795845 9.18 8.70 6.74 11.48 5.56 10.94 11.65 6.90 4.26 10.87 7.04 8.51 7.94 7.69 12.66 5.83 6.25 23.26 13.79 6.72 8.11 4.48 7.96 9.18 9.68 19.12 15.09 7.14 37.50 20.00 5.79 15.52 17.39 5.56 10.20 8.93 6.02 11.11 4.20 9.52 13.11 11.20 13.04 10.23 10.47 6.67 7.23 21.31 12.40 7.89 10.91 7.94 6.06 8.11 10.75 5.98 10.62 10.71 K intron_retention Sr-CI chr2L + chr2L_4121980_4122045 chr2L_4121979_4121980;chr2L_4122045_4122046 chr2L_4121619_4121979;chr2L_4122046_4122583 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pvf2 chr2L - chr2L_7070947_7074253 chr2L_7070946_7070947;chr2L_7074253_7074254 chr2L_7070421_7070946;chr2L_7074254_7074356 0.00 0.00 0.72 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 1.32 2.17 0.00 0.00 0.00 0.00 1.80 0.64 0.00 0.00 0.00 0.54 1.24 0.00 0.00 2.28 2.29 0.00 0.00 0.52 0.00 0.00 0.44 1.10 1.43 0.58 0.00 1.36 0.73 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.78 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor RI_chr2R_12650846_12659758,Sod2 chr2R - chr2R_12661312_12661368 chr2R_12661315_12661368 chr2R_12661369_12661392;chr2R_12661260_12661311 100.00 98.28 97.44 98.61 97.67 97.37 100.00 98.57 97.20 96.55 94.74 98.88 97.83 100.00 100.00 100.00 98.00 93.55 100.00 96.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.78 100.00 100.00 98.28 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.34 100.00 100.00 100.00 100.00 98.51 93.55 95.95 97.83 100.00 97.44 100.00 98.11 96.08 100.00 98.89 98.00 K jcn_only_AD CG31140,F_chr3R_19799277_19802225 chr3R + chr3R_19803838_19804671 chr3R_19803934_19804671 chr3R_19804672_19804957;chr3R_19803658_19803837 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD pgant3,I_chr2R_2947729_2947783 chr2R - chr2R_2947729_2947787 chr2R_2947729_2947783 chr2R_2947629_2947728;chr2R_2947788_2947883 0.00 0.98 0.00 0.00 0.00 1.15 0.99 0.00 0.61 0.00 0.00 1.10 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.58 0.00 0.62 0.79 0.00 1.28 1.28 3.75 0.00 0.00 0.00 0.99 0.00 1.27 0.00 0.00 0.00 2.29 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14133 chr3L - chr3L_11683209_11683325 chr3L_11683208_11683209;chr3L_11683325_11683326 chr3L_11682731_11683208;chr3L_11683326_11683412 41.89 30.77 53.85 73.33 58.33 35.71 42.86 28.57 54.05 NA 53.33 50.00 NA NA 88.89 40.00 NA NA 36.36 58.62 35.71 NA NA NA NA NA NA NA NA 41.67 35.29 NA 46.15 42.11 NA NA 50.00 45.45 72.73 35.71 NA 56.67 NA 25.00 58.33 35.71 35.71 NA 52.63 38.46 40.00 NA 13.33 NA 53.33 40.00 26.09 29.17 K jcn_only_AD twin,RI_chr3R_20032242_20045321 chr3R - chr3R_20046286_20047530;chr3R_20046286_20047526 chr3R_20046286_20047514 chr3R_20046254_20046285;chr3R_20047531_20047647 100.00 NA NA NA NA NA NA 96.30 NA NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 96.88 NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 96.67 NA NA NA NA NA NA NA NA NA K intron_retention CG3420 chr2R - chr2R_2644142_2644217 chr2R_2644141_2644142;chr2R_2644217_2644218 chr2R_2644048_2644141;chr2R_2644218_2644362 0.00 0.00 0.00 1.59 0.00 0.00 0.00 2.60 2.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.91 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 1.00 0.00 K intron_retention CG5382,CG5380 chr3R - chr3R_18191192_18191258 chr3R_18191191_18191192;chr3R_18191258_18191259 chr3R_18190998_18191191;chr3R_18191259_18191370 1.71 1.19 1.41 3.12 0.00 4.17 2.50 1.16 0.75 0.00 0.00 0.00 0.00 0.00 0.00 3.17 0.00 0.00 0.00 0.00 0.00 4.76 3.31 3.17 2.35 3.70 3.81 4.00 6.45 2.74 0.00 2.27 1.06 0.00 2.90 13.11 2.67 3.41 1.71 5.45 3.57 2.50 0.00 1.10 1.85 2.33 3.00 3.92 0.00 0.00 5.08 0.00 0.00 0.94 0.00 0.00 2.47 2.74 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2388436;chrX_2388671_2389073;chrX_2389272_2395659 chrX_2388437_2388670;chrX_2389074_2389271 chrX_2387149_2387248;chrX_2395660_2395759 0.00 1.92 0.00 0.00 0.00 0.00 0.00 1.48 1.74 0.00 0.00 7.29 0.00 1.72 0.00 1.54 0.00 0.00 2.41 2.91 0.00 2.27 1.12 2.27 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 2.22 0.00 1.25 3.85 6.25 2.86 0.00 6.58 7.14 0.00 NA 2.29 1.12 0.00 0.00 0.00 0.00 NA 2.02 0.00 0.00 4.00 K intron_retention CG10576,snoRNA:684,I_chr3L_5756877_5757511,I_chr3L_5758117_5758186 chr3L - chr3L_5756374_5756654 chr3L_5756373_5756374;chr3L_5756654_5756655 chr3L_5756148_5756373;chr3L_5756655_5756876 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD vlc chr2R + chr2R_1589953_1590371;chr2R_1589894_1590371;chr2R_1589799_1590371;chr2R_1589805_1590371;chr2R_1590318_1590371;chr2R_1590294_1590371;chr2R_1589722_1590371;chr2R_1589693_1590371 chr2R_1589807_1590371 chr2R_1590372_1590451;chr2R_1589612_1589692 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 K intron_retention CG3566 chrX - chrX_6170492_6170564 chrX_6170491_6170492;chrX_6170564_6170565 chrX_6170403_6170491;chrX_6170565_6170760 4.91 6.42 3.77 7.69 2.00 2.25 10.17 3.23 4.61 9.84 0.00 5.21 5.00 2.60 1.64 5.61 6.56 8.64 0.00 3.21 3.85 30.56 4.38 8.55 4.48 16.33 12.36 14.81 28.99 6.03 20.11 5.56 3.75 5.79 5.10 9.09 7.30 4.44 4.60 6.06 10.34 5.39 1.54 4.35 4.57 4.91 3.39 7.83 2.76 1.89 5.11 10.91 2.30 3.63 0.87 2.27 2.87 4.82 N alternative_donor Rip11,RI_chrX_18530353_18530870,RI_chrX_18544139_18544185 chrX - chrX_18534444_18541222 chrX_18534444_18534510 chrX_18534299_18534443;chrX_18541223_18541623 0.72 0.74 0.61 0.72 0.70 0.72 1.06 0.75 0.79 0.47 0.57 1.00 0.87 1.02 0.73 0.98 0.94 0.72 0.81 0.83 0.59 0.80 0.91 0.91 1.03 0.57 0.89 2.27 0.66 0.58 0.55 0.37 0.60 0.81 0.99 0.73 0.58 0.54 0.46 0.82 0.47 0.82 0.66 0.71 0.30 0.50 0.57 0.70 0.82 0.51 0.92 1.00 0.49 0.31 0.76 0.41 0.35 0.47 K alternative_donor sop,RI_chr2L_9897132_9897211 chr2L - chr2L_9897132_9897472 chr2L_9897132_9897211 chr2L_9897032_9897131;chr2L_9897473_9897825 3.80 1.03 0.38 5.19 0.66 0.86 8.49 0.52 1.81 5.56 6.76 1.08 4.21 1.53 1.49 1.22 3.33 5.56 2.83 0.61 3.37 2.94 5.88 4.48 4.88 2.11 16.13 15.56 26.67 27.27 11.11 NA 3.85 3.75 6.67 30.77 1.83 6.45 2.80 6.56 9.09 0.83 1.94 16.67 0.17 5.41 2.78 3.33 2.64 7.02 41.67 8.57 0.96 7.32 0.76 9.76 9.09 2.50 K jcn_only_AA Nnf1b,I_chr2L_810759_810816,KH1 chr2L + chr2L_810759_810816 chr2L_810759_810808 chr2L_810691_810758;chr2L_810817_810876 96.37 100.00 96.00 100.00 93.10 100.00 93.59 94.05 97.87 NA 100.00 97.17 96.67 98.04 96.43 95.88 97.22 97.14 95.12 95.24 100.00 NA 96.30 96.88 100.00 96.77 95.56 100.00 96.00 NA 80.36 96.30 90.91 100.00 100.00 96.30 90.91 95.00 98.28 96.00 96.77 97.53 93.10 96.88 92.86 93.62 94.44 85.71 98.90 93.62 98.46 94.12 95.45 94.74 100.00 97.73 97.26 90.91 K jcn_only_AA eIF5,RI_chrX_15883163_15883424,I_chrX_15883297_15883424,EI_chrX_15885411_15885854,RI_chrX_15885416_15885611 chrX - chrX_15883360_15883424;chrX_15883163_15883424;chrX_15883143_15883424 chrX_15883302_15883424 chrX_15883425_15883509;chrX_15883079_15883142 86.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 86.36 K cassette Atpalpha,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16792336_16798894;chr3R_16792925_16798894 chr3R_16792925_16794113,chr3R_16792336_16794113;chr3R_16794209_16798894 chr3R_16794114_16794208 chr3R_16792236_16792335;chr3R_16798895_16798994 0.44 0.76 0.31 0.20 0.26 0.00 0.44 0.36 0.31 0.00 0.36 0.39 1.49 0.65 0.58 0.26 0.31 1.32 0.30 0.46 0.00 0.62 0.20 0.41 0.45 1.03 0.51 4.72 1.21 0.41 0.00 1.43 0.95 0.60 0.82 1.04 0.29 0.25 0.88 1.38 0.51 0.28 0.36 0.54 0.46 0.38 0.35 0.61 0.51 0.20 0.44 0.61 0.52 0.39 0.23 0.24 0.27 0.75 K jcn_only_AA pAbp,I_chr2R_14027838_14028996 chr2R + chr2R_14028460_14028996 chr2R_14028460_14028992 chr2R_14028264_14028459;chr2R_14028997_14029096 95.04 95.88 94.67 94.31 95.56 95.77 95.08 92.37 95.81 96.15 96.97 95.71 97.44 95.79 98.39 95.15 91.80 98.08 92.96 91.59 97.06 92.77 91.84 NA NA 93.33 81.36 87.50 85.00 92.16 95.65 92.31 87.32 96.08 86.27 95.00 92.68 98.61 79.41 91.30 93.33 95.68 93.62 91.97 NA 97.56 100.00 89.47 96.43 96.97 95.00 100.00 96.67 88.46 89.87 100.00 95.24 95.24 K intron_retention lic,CG2200 chrX + chrX_12985575_12985644 chrX_12985574_12985575;chrX_12985644_12985645 chrX_12985093_12985574;chrX_12985645_12986035 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor None chrU - chrU_5771599_5771833;chrU_5771599_5771693 chrU_5771599_5771684 61.85 61.85 67.42 61.90 60.40 64.17 60.94 55.29 63.56 59.52 63.75 60.68 70.00 59.80 69.86 62.24 65.93 63.21 69.16 63.67 60.26 60.34 63.47 58.56 58.68 61.46 60.42 59.15 55.87 58.82 65.19 56.73 54.55 62.50 60.16 48.94 63.29 60.14 61.97 60.89 63.39 62.40 63.54 61.47 63.24 60.95 60.10 63.55 62.05 62.15 62.24 58.49 62.07 59.66 62.68 60.19 60.73 63.66 K jcn_only_AD CG6608,I_chr3R_6706829_6707624 chr3R - chr3R_6706829_6707624 chr3R_6706829_6707284 chr3R_6706729_6706828;chr3R_6707625_6707724 99.24 98.44 100.00 100.00 100.00 97.62 98.70 100.00 99.41 100.00 96.05 96.61 96.67 100.00 98.15 100.00 100.00 100.00 97.44 98.99 100.00 99.24 99.30 98.95 100.00 98.65 97.87 99.22 99.55 100.00 100.00 99.36 99.69 100.00 98.91 100.00 97.75 98.59 97.14 100.00 100.00 99.24 100.00 98.59 100.00 98.82 98.84 100.00 99.00 97.10 98.13 98.41 100.00 98.67 98.67 98.55 98.11 100.00 K intron_retention None chrU + chrU_1184302_1184352 chrU_1184301_1184302;chrU_1184352_1184353 1.03 0.00 0.00 8.93 1.19 1.92 1.89 1.37 1.59 0.00 0.00 3.20 3.76 2.42 0.73 1.27 0.00 0.00 0.00 2.02 0.00 0.00 0.00 1.59 0.00 2.25 6.73 0.00 0.00 0.00 1.53 0.00 2.60 0.46 0.00 3.49 2.74 0.00 2.63 2.05 0.00 0.87 1.60 1.32 0.00 1.14 0.60 1.03 0.65 3.12 0.00 0.00 1.61 1.37 0.00 0.00 2.31 1.03 K intron_retention CG7185 chr3L - chr3L_8304816_8304873 chr3L_8304815_8304816;chr3L_8304873_8304874 chr3L_8304747_8304815;chr3L_8304874_8305173 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 K alternative_donor drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389597_9390151;chr2R_9389597_9389907;chr2R_9389597_9389940;chr2R_9389597_9390293;chr2R_9389597_9389751;chr2R_9389597_9390264;chr2R_9389597_9389753;chr2R_9389597_9389757 chr2R_9389597_9390195 chr2R_9389497_9389596;chr2R_9390294_9390295 57.14 68.42 51.22 55.93 37.50 46.67 57.41 43.55 44.58 73.33 50.00 43.33 50.00 48.15 60.00 55.77 50.00 57.14 53.85 39.22 48.39 47.83 60.00 58.33 47.83 54.05 66.67 73.33 62.50 83.33 52.50 46.67 41.67 54.10 72.22 80.77 71.43 61.54 56.52 60.53 44.44 46.58 57.89 72.22 57.14 61.11 84.21 32.00 48.48 81.25 76.19 58.33 66.67 93.33 43.59 76.47 78.12 62.50 K jcn_only_AD CG10681 chr3L + chr3L_12494819_12494874 chr3L_12494823_12494874 chr3L_12494875_12495047;chr3L_12494613_12494818 11.09 NA NA 9.68 NA NA 14.81 14.29 NA NA NA 3.03 NA NA NA 17.24 NA NA NA 21.74 NA NA NA NA NA NA NA NA NA NA NA NA NA 17.24 NA NA NA NA NA 12.50 NA 0.00 NA NA NA NA NA NA 6.67 0.00 0.00 NA NA NA NA NA NA NA K intron_retention CG5594,CG2812 chr2R + chr2R_19796155_19797200 chr2R_19796154_19796155;chr2R_19797200_19797201 chr2R_19796020_19796154;chr2R_19797201_19797332 1.81 0.00 0.00 1.81 0.00 0.00 1.79 2.84 1.33 0.00 0.00 2.97 2.13 1.89 0.87 1.54 2.44 2.11 2.04 1.61 2.33 7.46 0.00 0.96 2.60 1.23 2.04 0.00 1.82 0.00 1.94 2.86 1.75 1.15 1.19 1.27 1.53 0.00 1.94 3.68 3.64 1.38 0.00 0.00 3.37 2.80 2.44 2.20 1.72 4.48 0.00 2.53 5.36 2.13 2.04 2.53 3.33 1.56 K intron_retention blow,RI_chr2R_3470434_3470776 chr2R - chr2R_3472863_3474436 chr2R_3472862_3472863;chr2R_3474436_3474437 chr2R_3472561_3472862;chr2R_3474437_3474581 9.33 2.56 4.17 11.86 0.00 5.56 14.00 8.82 7.77 20.83 10.53 8.86 14.81 7.69 10.71 8.64 5.88 22.50 11.36 6.96 11.63 28.05 8.82 16.67 15.15 12.70 25.00 17.24 21.25 9.26 6.49 10.26 13.51 9.33 4.84 8.47 10.71 13.51 3.45 8.51 13.73 13.83 6.45 3.17 7.69 10.00 8.93 11.76 9.78 15.22 12.90 7.69 12.50 6.45 5.06 8.89 6.35 6.38 K intron_retention SP2637,Gint3 chr2R - chr2R_14530268_14545580 chr2R_14530267_14530268;chr2R_14545580_14545581 chr2R_14529910_14530267;chr2R_14545581_14545707 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG1746,I_chr3R_27044771_27044867,I_chr3R_27044771_27044990,I_chr3R_27044771_27045027,RI_chr3R_27044771_27045110,I_chr3R_27044771_27045132,RI_chr3R_27044771_27045188,I_chr3R_27044771_27045193,RI_chr3R_27044771_27045268 chr3R - chr3R_27044771_27044867 chr3R_27044770_27044771;chr3R_27044867_27044868 chr3R_27044671_27044770;chr3R_27044868_27044967 100.00 NA NA NA NA NA 100.00 88.89 100.00 NA NA 100.00 NA NA NA 88.89 NA NA 100.00 91.67 NA NA NA 100.00 NA NA NA NA 100.00 NA NA NA 87.50 NA NA NA NA NA NA 100.00 NA 90.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA 88.89 100.00 NA NA K intron_retention CG31224 chr3R - chr3R_14482908_14484481 chr3R_14482907_14482908;chr3R_14484481_14484482 chr3R_14481887_14482907;chr3R_14484482_14485019 30.77 NA 30.77 NA NA NA 66.67 NA 30.77 NA NA 30.77 NA NA NA 70.00 NA NA NA 35.71 NA 81.82 22.22 NA 14.29 NA 53.33 NA NA NA NA NA NA 43.75 NA 12.50 NA NA NA 16.67 NA 23.08 NA NA NA NA NA 33.33 46.15 NA 25.00 NA NA NA 30.77 NA NA NA K cassette I_chrX_7993650_7995126,Gclc chrX - chrX_7999928_8010024 chrX_7999928_8009449;chrX_8009614_8010024 chrX_8009450_8009613 chrX_7999301_7999927;chrX_8010025_8010150 99.37 98.85 100.00 99.26 100.00 100.00 100.00 99.33 99.62 98.36 98.61 99.45 100.00 99.07 98.94 99.37 100.00 100.00 99.14 99.05 100.00 99.09 99.53 99.18 99.02 98.88 99.38 99.33 96.69 99.36 99.49 100.00 100.00 100.00 100.00 99.30 98.25 100.00 98.92 98.94 99.03 99.44 100.00 98.57 98.21 99.11 98.53 99.41 100.00 98.72 99.39 98.94 100.00 100.00 100.00 100.00 98.68 100.00 K intron_retention Shawn_Tyler,Shawn chrX + chrX_19509139_19509216 chrX_19509138_19509139;chrX_19509216_19509217 chrX_19509057_19509138;chrX_19509217_19509641 50.00 43.33 39.39 62.96 57.14 70.00 63.16 39.39 52.17 59.09 66.67 67.44 47.06 50.00 50.00 55.56 63.16 50.00 45.45 55.32 61.11 29.63 60.00 44.07 55.26 65.00 50.98 60.78 62.07 45.45 55.00 50.00 41.67 55.56 66.67 73.08 43.40 40.48 50.00 46.15 53.85 47.62 44.44 40.48 38.64 43.64 50.00 56.52 49.02 51.79 51.22 39.29 47.50 50.00 37.04 30.36 54.39 42.11 K intron_retention crol,I_chr2L_11799403_11802904 chr2L - chr2L_11799403_11802370 chr2L_11799402_11799403;chr2L_11802370_11802371 chr2L_11799303_11799402;chr2L_11802371_11802412 100.00 98.11 100.00 98.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention RpL36,RI_chrX_522912_523358,I_chrX_522932_523360,I_chrX_522949_523360 chrX - chrX_522912_523389 chrX_522911_522912;chrX_523389_523390 chrX_522849_522911;chrX_523390_523412 90.91 93.75 87.50 90.91 90.91 91.67 97.14 86.21 92.00 94.12 NA 96.15 95.00 85.71 90.91 79.17 90.91 100.00 NA 84.51 NA 92.68 100.00 95.45 97.56 100.00 93.33 88.24 70.83 90.91 88.89 88.00 77.78 71.43 90.00 76.92 93.33 93.75 100.00 87.50 77.14 88.89 100.00 90.00 80.95 75.86 94.44 60.87 91.30 83.33 88.24 94.12 84.00 93.75 56.25 100.00 89.66 77.78 K alternative_donor CG5938,EI_chr3R_23100734_23100898,RI_chr3R_23101686_23102014 chr3R + chr3R_23100711_23101112 chr3R_23100734_23101112 chr3R_23101113_23101275;chr3R_23100634_23100710 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG2950,I_chr2L_4844647_4845086,I_chr2L_4844952_4845086 chr2L - chr2L_4844773_4845086 chr2L_4844772_4844773;chr2L_4845086_4845087 chr2L_4844712_4844772;chr2L_4845087_4845158 1.59 2.13 0.00 1.08 0.00 2.27 6.56 1.30 4.12 0.00 0.00 2.33 8.11 0.00 0.00 4.92 2.94 0.00 0.00 1.10 0.00 2.41 0.00 4.44 5.71 5.26 5.97 10.00 6.12 0.00 1.59 0.00 0.00 4.88 3.85 1.92 0.00 2.04 0.00 3.85 3.92 6.82 0.00 4.17 0.00 0.00 0.00 1.67 2.60 2.70 0.00 5.71 0.00 0.00 7.41 0.00 0.00 0.00 K alternative_acceptor sda,I_chr3R_22742285_22742350,RI_chr3R_22750984_22752737 chr3R + chr3R_22742285_22750355 chr3R_22742285_22742350 chr3R_22742270_22742284;chr3R_22750356_22750983 0.86 0.00 0.00 4.35 0.00 4.35 5.56 3.45 4.08 0.00 0.00 3.85 0.00 4.55 5.00 4.35 6.25 0.00 4.00 4.35 0.00 2.50 1.72 0.00 0.00 0.00 2.94 3.57 10.00 0.00 4.76 0.00 0.00 2.56 5.00 0.00 0.00 0.00 0.00 2.44 0.00 2.94 5.00 2.27 0.00 0.00 0.00 4.35 3.33 0.00 2.94 0.00 0.00 NA 4.35 0.00 0.00 0.00 K jcn_only_AD endos,I_chr3L_14024099_14024488,I_chr3L_14024103_14024158,I_chr3L_14024103_14024546,noncoding_12505,I_chr3L_14024496_14024546 chr3L - chr3L_14024103_14024488;chr3L_14024103_14024158;chr3L_14024103_14024407 chr3L_14024103_14024546 chr3L_14024003_14024102;chr3L_14024547_14024588 2.88 3.29 2.70 0.87 3.03 0.75 3.95 0.84 2.96 3.82 2.13 0.93 2.94 2.14 0.47 3.55 1.99 1.28 1.67 2.70 0.65 6.78 10.64 8.11 3.95 0.00 1.07 3.31 2.22 3.08 0.00 2.40 11.56 3.21 2.75 1.02 5.30 7.55 4.73 4.00 1.46 2.95 2.88 1.64 2.59 2.99 3.25 2.38 1.75 7.32 2.46 0.00 3.00 7.48 0.57 4.03 5.10 3.83 K alternative_acceptor CG8116,I_chr3R_4542126_4542214,RI_chr3R_4542291_4542625,RI_chr3R_4542291_4542652,I_chr3R_4542561_4542617,I_chr3R_4545118_4545525 chr3R + chr3R_4542291_4542622;chr3R_4542291_4542625 chr3R_4542291_4542617 chr3R_4542215_4542290;chr3R_4542626_4542717 75.00 NA 80.00 70.00 66.67 NA 90.91 75.00 68.75 87.50 66.67 88.89 80.00 NA 100.00 83.33 66.67 66.67 83.33 64.71 71.43 78.26 75.00 75.00 NA NA 57.14 78.95 77.27 75.00 83.33 71.43 83.33 66.67 50.00 75.00 77.78 NA 62.50 64.00 66.67 71.43 NA 75.00 70.00 76.47 60.00 71.43 66.67 75.00 77.78 NA 83.33 NA 57.14 NA NA 70.00 K intron_retention EI_chr2L_13164741_13164824,Sfmbt chr2L - chr2L_13173942_13174438 chr2L_13173941_13173942;chr2L_13174438_13174439 chr2L_13172643_13173941;chr2L_13174439_13175276 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.66 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 3.17 0.00 0.00 0.00 3.51 0.00 0.00 4.55 2.70 0.00 0.00 9.09 0.00 0.00 4.17 2.50 0.00 2.44 0.00 1.45 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 7.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585739_2586036 chr3L_2585738_2585739;chr3L_2586036_2586037 chr3L_2585639_2585738;chr3L_2586037_2586103 53.85 NA 41.67 43.75 NA 50.00 34.48 55.56 51.85 NA NA 47.62 75.00 42.86 50.00 60.87 53.85 46.67 68.75 68.42 41.67 81.82 47.06 50.00 60.00 35.71 53.85 NA 58.62 NA 61.54 NA 63.64 41.38 NA NA 27.27 NA NA 37.93 57.14 60.00 60.00 25.00 NA 46.15 NA 54.05 57.14 NA 66.67 63.64 NA NA 54.55 NA NA NA K intron_retention Or43b,Kdm4A chr2R - chr2R_3808557_3808619 chr2R_3808556_3808557;chr2R_3808619_3808620 chr2R_3808509_3808556;chr2R_3808620_3808977 90.91 88.24 92.86 94.59 100.00 90.91 100.00 89.66 92.31 75.00 87.50 85.19 81.82 92.31 93.75 92.31 100.00 100.00 94.12 91.67 94.44 93.10 84.62 64.00 94.12 100.00 84.62 86.96 92.31 85.71 87.50 94.44 90.48 90.91 83.33 94.44 76.47 77.78 95.65 79.31 94.44 96.77 92.86 85.19 76.47 80.00 67.65 92.86 91.43 86.67 71.43 93.75 76.47 77.78 94.44 66.67 80.65 81.82 K jcn_only_AD I_chr2L_8213024_8213227,CG8360 chr2L + chr2L_8213261_8213336 chr2L_8213283_8213336 chr2L_8213337_8213402;chr2L_8213228_8213260 91.14 88.64 95.59 86.79 96.15 93.65 93.83 90.32 98.08 92.00 94.44 91.67 97.44 98.21 91.18 88.06 92.31 95.31 100.00 93.44 90.70 91.09 83.05 82.76 96.77 100.00 82.86 NA 92.45 72.22 70.91 83.33 80.00 93.75 89.58 80.00 87.67 87.10 90.20 81.94 88.46 98.84 94.44 87.23 90.00 90.91 94.12 84.00 94.74 88.89 87.64 87.93 92.31 91.53 98.59 91.86 89.42 92.96 K alternative_acceptor Eb1,I_chr2R_2640494_2642206,I_chr2R_2642491_2642549 chr2R + chr2R_2636895_2640136 chr2R_2636895_2640115 chr2R_2636790_2636894;chr2R_2640137_2640289 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.29 0.26 0.00 0.52 0.00 0.58 0.00 0.30 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.66 0.31 0.00 0.00 0.14 0.00 0.00 0.30 0.00 0.29 0.00 0.00 0.00 0.30 0.00 K intron_retention CG42574,I_chr3R_618802_618939,I_chr3R_621546_625413 chr3R - chr3R_614010_614095 chr3R_614009_614010;chr3R_614095_614096 chr3R_613320_614009;chr3R_614096_614297 0.00 0.00 1.69 0.00 0.00 0.00 1.53 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 0.56 1.04 0.00 0.00 0.00 1.42 2.61 0.00 0.00 0.00 0.00 0.00 0.00 1.47 1.89 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 1.89 0.00 0.00 0.00 0.00 K jcn_only_AD CG32425,I_chr3L_20490581_20505036,CG18281,CG17637,CG5078,I_chr3L_20502617_20503129,I_chr3L_20504930_20505036 chr3L + chr3L_20490526_20503129 chr3L_20491565_20503129 chr3L_20503130_20503229;chr3L_20490481_20490525 100.00 100.00 NA NA NA NA NA NA 96.55 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 100.00 95.24 NA 90.48 NA NA NA NA NA NA NA NA NA 100.00 89.66 100.00 96.88 NA 100.00 NA NA 100.00 NA NA 100.00 100.00 NA 97.06 NA 95.00 NA NA NA NA NA K intron_retention SrpRbeta,CG32022,I_chr3L_8714134_8714220 chr3L - chr3L_8714006_8714060 chr3L_8714005_8714006;chr3L_8714060_8714061 chr3L_8713362_8714005;chr3L_8714061_8714133 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045251_16046104;chr3L_16045251_16046108;chr3L_16045251_16045854;chr3L_16045251_16046111 chr3L_16045251_16046129 chr3L_16045216_16045250;chr3L_16046130_16046204 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K jcn_only_AA Crk,RI_chr4_231302_233315,I_chr4_231307_232253 chr4 + chr4_233356_233449 chr4_233356_233416 chr4_233316_233355;chr4_233450_233734 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.16 NA 100.00 100.00 100.00 100.00 100.00 99.05 100.00 98.25 100.00 100.00 97.67 100.00 97.67 100.00 100.00 100.00 100.00 NA 100.00 100.00 97.87 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 98.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD bowl,RI_chr2L_3772695_3773616 chr2L + chr2L_3771785_3772460;chr2L_3771755_3772460 chr2L_3771874_3772460 chr2L_3772461_3772694;chr2L_3771707_3771754 10.71 NA NA NA NA NA 20.83 22.73 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.76 NA NA NA K cassette cwo,noncoding_15870 chr3R + chr3R_6215160_6223084 chr3R_6215160_6222418;chr3R_6222543_6223084 chr3R_6222419_6222542 chr3R_6214846_6215159;chr3R_6223085_6223406 77.78 65.00 94.44 96.30 83.33 92.86 37.14 80.65 75.00 84.00 68.18 67.74 71.43 78.57 94.74 76.67 87.50 70.59 87.50 79.41 78.57 74.55 82.50 83.87 64.00 73.68 75.00 83.33 66.67 80.56 81.25 86.67 86.27 88.89 73.08 70.97 80.00 75.86 70.00 82.35 80.00 71.79 73.33 71.43 83.33 65.22 80.00 73.91 76.47 90.32 84.85 86.36 72.22 69.23 69.57 77.78 75.00 76.32 K intron_retention CG31064,RI_chr3R_23056388_23064246,I_chr3R_23069667_23070365 chr3R - chr3R_23058908_23058969 chr3R_23058907_23058908;chr3R_23058969_23058970 chr3R_23058657_23058907;chr3R_23058970_23059403 0.00 0.00 0.00 16.67 0.00 0.00 0.00 5.80 0.00 0.00 0.00 1.67 3.57 0.00 0.00 0.00 2.86 0.00 0.00 1.22 0.00 7.32 0.00 5.88 0.00 0.00 1.85 0.00 0.00 0.00 0.00 3.45 2.86 0.00 0.00 0.00 0.00 2.70 1.61 0.00 3.70 1.18 0.00 1.75 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG31038,I_chr3R_25702915_25703648,I_chr3R_25705533_25722419,I_chr3R_25727788_25727905 chr3R + chr3R_25702915_25703648;chr3R_25702895_25703648;chr3R_25702897_25703648;chr3R_25702901_25703648;chr3R_25702838_25703648;chr3R_25702970_25703648 chr3R_25702989_25703648 chr3R_25703649_25703748;chr3R_25702831_25702837 25.00 28.57 27.27 33.33 NA 25.00 11.11 33.33 25.00 33.33 NA 16.67 40.00 28.57 42.86 15.38 NA 25.00 50.00 13.79 50.00 26.32 16.67 15.38 27.27 28.57 40.00 28.57 40.00 50.00 18.75 50.00 15.38 23.08 25.00 18.18 20.00 22.22 21.43 16.67 100.00 26.67 NA 27.27 33.33 25.00 10.00 33.33 23.08 22.22 18.18 11.11 20.00 14.29 33.33 22.22 25.00 25.00 K jcn_only_AA Galpha49B,I_chr2R_8501587_8501648,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8500357_8501648;chr2R_8500357_8501071 chr2R_8500357_8501759 chr2R_8500333_8500356;chr2R_8501760_8501850 4.88 NA NA NA NA NA 5.00 6.90 5.56 NA NA 2.27 4.35 4.76 NA 7.41 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 11.11 NA NA NA NA NA NA NA NA NA K cassette GlcAT-P,I_chr3L_11172482_11172633 chr3L - chr3L_11172817_11176733 chr3L_11172817_11175254;chr3L_11175744_11176733 chr3L_11175255_11175743 chr3L_11172634_11172816;chr3L_11176734_11177238 26.90 18.02 24.00 39.66 8.86 7.69 13.43 31.30 23.70 28.89 10.75 52.98 10.96 38.71 30.00 41.03 21.33 24.05 30.38 33.97 15.38 30.28 26.83 23.96 29.51 44.62 22.47 17.39 25.93 20.21 33.85 32.14 29.69 28.35 30.77 65.52 20.71 19.10 22.41 31.39 33.33 30.00 32.00 37.31 31.58 38.16 18.87 34.38 26.90 17.65 18.87 30.36 22.62 17.65 32.29 21.13 17.35 23.85 K alternative_donor l(3)82Fd,I_chr3R_1125296_1161435,I_chr3R_1125296_1175189,I_chr3R_1129905_1160126,I_chr3R_1140028_1160126,I_chr3R_1147660_1148709 chr3R - chr3R_1148848_1149160;chr3R_1148848_1149460;chr3R_1148848_1149413 chr3R_1148848_1149386 chr3R_1148710_1148847;chr3R_1149461_1149489 40.00 NA NA 66.67 NA NA 20.00 40.00 25.00 NA NA 60.00 NA NA NA 28.57 NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Prosalpha5,RI_chr2R_13310877_13311160 chr2R + chr2R_13300549_13300606 chr2R_13300548_13300549;chr2R_13300606_13300607 chr2R_13300410_13300548;chr2R_13300607_13301334 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 K jcn_only_AD CG1832,I_chr2L_22168644_22168740 chr2L - chr2L_22168644_22168887 chr2L_22168644_22168740 chr2L_22168544_22168643;chr2L_22168888_22169038 1.75 1.59 0.00 5.13 2.00 0.00 2.56 0.81 2.66 3.85 0.00 3.31 3.45 0.00 2.50 2.38 1.39 2.82 5.00 2.74 0.00 1.79 2.50 0.00 1.72 2.67 1.49 0.00 2.27 4.17 1.22 3.92 0.83 3.10 1.45 5.00 0.00 0.00 2.27 0.00 3.03 1.32 1.75 0.00 0.00 3.95 0.00 0.99 2.11 0.00 0.00 1.35 4.44 2.38 2.44 3.64 0.00 0.00 K alternative_donor CG1965,I_chr3R_2902064_2902611 chr3R + chr3R_2893812_2894429 chr3R_2893817_2894429 chr3R_2894430_2894670;chr3R_2893510_2893811 10.00 NA NA 3.33 NA NA 10.00 5.56 7.69 NA 5.88 5.00 NA 14.29 5.56 15.38 NA NA 12.50 13.04 6.67 NA 16.67 NA NA 0.00 14.29 NA NA NA 54.55 NA 14.29 4.35 NA NA NA 6.67 NA 10.00 NA 10.00 NA NA NA NA NA NA 12.50 NA NA NA NA NA 29.41 NA NA NA K jcn_only_AD CDase chr3R + chr3R_26286512_26288536;chr3R_26286611_26288536;chr3R_26286613_26288536;chr3R_26286631_26288536 chr3R_26286617_26288536 chr3R_26288537_26288691;chr3R_26286221_26286511 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N intron_retention spir,I_chr2L_20334199_20334626,I_chr2L_20336550_20339058 chr2L + chr2L_20336550_20336621 chr2L_20336549_20336550;chr2L_20336621_20336622 chr2L_20336470_20336549;chr2L_20336622_20336649 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 69.57 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1524140_1524194 chr3L_1524139_1524140;chr3L_1524194_1524195 chr3L_1524027_1524139;chr3L_1524195_1524357 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 5.26 0.00 K intron_retention lola,I_chr2R_6380094_6419543,I_chr2R_6380747_6419543,I_chr2R_6394546_6419543,I_chr2R_6403557_6406705,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6403164_6403339 chr2R_6403163_6403164;chr2R_6403339_6403340 chr2R_6403096_6403163;chr2R_6403340_6403556 21.43 21.43 20.00 44.83 20.83 18.18 37.37 21.71 21.57 11.11 22.64 24.24 23.19 28.81 27.14 30.21 21.92 12.68 28.99 23.53 28.00 16.42 22.47 19.05 27.78 18.75 31.15 15.62 10.00 21.28 20.00 35.71 35.14 20.87 31.71 21.05 22.67 14.29 23.40 17.24 26.92 20.87 20.93 15.00 43.75 16.67 15.00 16.13 14.29 28.57 22.97 13.64 22.73 10.53 22.08 20.83 15.38 17.86 K alternative_acceptor CG31922,RI_chr2L_1170364_1170429 chr2L + chr2L_1170364_1170429 chr2L_1170364_1170418 chr2L_1170264_1170363;chr2L_1170430_1170529 90.45 NA NA 100.00 NA NA NA 100.00 NA NA NA 91.67 NA NA 100.00 81.82 NA NA 87.50 92.31 NA NA NA NA NA 88.89 NA NA NA NA 73.33 NA NA 87.50 NA NA NA NA NA NA 87.50 100.00 NA NA NA 90.91 NA NA 91.67 NA 100.00 NA NA NA 81.82 88.89 NA 90.00 K jcn_only_AA CG2371 chrX - chrX_11572304_11572435 chrX_11572383_11572435 chrX_11572436_11572509;chrX_11571619_11572303 92.02 NA NA NA NA NA NA NA 96.15 NA NA NA NA NA NA NA NA NA NA 90.00 NA NA 83.33 NA NA NA NA NA NA NA NA NA NA NA NA NA 95.83 NA NA NA NA NA NA NA NA 86.36 NA NA NA NA 90.48 NA NA NA NA 93.55 95.00 NA K intron_retention CG7998 chr3R + chr3R_14052289_14052451 chr3R_14052288_14052289;chr3R_14052451_14052452 chr3R_14051893_14052288;chr3R_14052452_14052659 0.29 0.51 1.00 1.03 0.00 0.00 1.21 0.38 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.24 0.00 1.54 0.85 0.36 1.09 0.00 1.04 0.00 1.54 0.69 0.53 0.00 0.39 0.38 0.54 0.00 0.90 0.00 0.29 0.53 1.43 0.84 0.00 0.00 0.34 0.00 1.15 0.00 0.68 1.89 0.66 0.00 0.00 0.00 0.52 0.00 0.00 0.00 K alternative_donor G-salpha60A chr2R + chr2R_19830338_19831752;chr2R_19830349_19831752 chr2R_19830125_19831752 chr2R_19831753_19832263;chr2R_19830091_19830124 92.59 83.33 96.30 94.92 92.59 83.33 94.83 95.35 97.73 NA 90.48 93.75 95.65 97.22 92.11 98.00 95.00 88.24 94.59 97.37 92.59 69.23 100.00 96.15 92.31 88.00 81.25 90.91 68.42 NA 93.33 NA 70.00 93.18 NA 75.00 95.24 88.24 92.00 77.27 NA 93.44 95.45 91.67 84.62 85.71 95.65 NA 92.73 100.00 88.89 92.59 92.31 NA 94.29 90.91 100.00 NA K intron_retention CG4068 chrX - chrX_4823342_4823406 chrX_4823341_4823342;chrX_4823406_4823407 chrX_4822250_4823341;chrX_4823407_4823737 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.98 0.00 0.00 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 1.16 1.00 0.00 NA 0.00 0.00 0.00 NA 0.00 3.57 2.38 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 N jcn_only_AD CG33936,CG33937,RI_chr3R_5183458_5183705 chr3R + chr3R_5182946_5183705;chr3R_5180806_5183705 chr3R_5183178_5183705 chr3R_5183706_5183805 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.01 2.45 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.71 0.00 0.00 1.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 K jcn_only_AA MESK2,I_chr2R_17401067_17401713 chr2R + chr2R_17389985_17394826 chr2R_17389985_17394799 chr2R_17389891_17389984;chr2R_17394827_17394906 65.00 63.64 NA 60.61 NA NA 66.67 58.82 69.81 NA NA 57.69 NA 57.69 NA 68.57 NA NA 72.73 NA NA 51.61 60.00 NA NA NA NA NA NA NA 61.90 NA 61.90 67.65 68.18 NA NA NA NA 56.52 72.73 65.52 85.00 59.26 NA 65.00 NA NA 62.50 NA 65.38 NA NA NA 68.18 NA 66.67 NA K intron_retention ATPsyn-Cf6,I_chr3R_19181282_19181355,I_chr3R_19181508_19181563,I_chr3R_19181524_19181702 chr3R - chr3R_19181282_19181355 chr3R_19181281_19181282;chr3R_19181355_19181356 chr3R_19181216_19181281;chr3R_19181356_19181424 100.00 97.37 100.00 100.00 100.00 100.00 100.00 98.65 98.51 96.30 100.00 98.80 100.00 100.00 97.83 100.00 100.00 100.00 96.43 99.30 100.00 100.00 100.00 97.14 100.00 97.50 98.25 100.00 100.00 97.06 98.51 100.00 97.62 100.00 100.00 100.00 100.00 100.00 97.87 100.00 98.65 98.41 100.00 96.55 100.00 98.82 97.50 100.00 98.33 97.22 100.00 100.00 100.00 94.59 100.00 100.00 97.30 100.00 K intron_retention CG8929 chr2R + chr2R_16215075_16215371 chr2R_16215074_16215075;chr2R_16215371_16215372 chr2R_16214949_16215074;chr2R_16215372_16215639 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 95.65 NA NA 100.00 NA NA 100.00 100.00 100.00 NA 93.33 100.00 100.00 100.00 100.00 100.00 88.89 100.00 93.75 100.00 100.00 100.00 95.65 NA NA 95.00 100.00 100.00 NA NA 100.00 92.86 90.91 100.00 100.00 100.00 NA 100.00 NA NA 94.44 100.00 93.33 100.00 100.00 NA 100.00 100.00 NA 100.00 K intron_retention I_chrX_1962457_1964222,CG4045 chrX - chrX_1969652_1969701 chrX_1969651_1969652;chrX_1969701_1969702 chrX_1969240_1969651;chrX_1969702_1969920 13.29 10.08 13.13 18.84 14.93 15.19 16.39 11.70 16.20 5.15 15.25 11.45 10.34 15.62 13.92 22.06 10.42 25.81 14.67 14.29 16.67 41.27 13.33 10.26 20.90 23.44 17.39 30.77 18.84 10.34 19.51 11.65 16.30 12.24 13.19 9.00 7.65 10.00 11.59 16.15 20.00 12.05 15.00 7.76 11.33 13.29 13.60 10.40 17.57 9.77 12.14 9.72 6.76 8.92 15.38 9.80 5.56 9.80 K cassette R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8088454_8089393 chr2L_8088454_8088609;chr2L_8088716_8089393 chr2L_8088610_8088715 chr2L_8088448_8088453;chr2L_8089394_8089493 16.23 16.67 NA 14.29 NA 18.18 15.00 23.81 17.86 NA NA 12.00 15.79 13.33 NA 20.59 25.00 27.27 28.57 16.67 NA NA 6.90 NA 8.33 NA NA NA NA NA 27.27 NA NA 20.00 5.56 12.50 NA NA NA 8.00 NA 30.77 27.27 7.41 NA NA 0.00 NA 21.43 NA 7.14 NA 5.56 NA 42.86 NA 8.33 NA K alternative_acceptor I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,cg,I_chr2R_10062078_10063898,I_chr2R_10064197_10068715,I_chr2R_10068194_10068715 chr2R + chr2R_10062078_10063910 chr2R_10062078_10063898 chr2R_10061978_10062077;chr2R_10063911_10063998 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.83 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.67 0.53 1.37 0.57 0.00 0.00 1.33 0.00 0.00 0.61 0.58 0.00 0.91 1.11 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7837 chr3R - chr3R_25623216_25623291 chr3R_25623215_25623216;chr3R_25623291_25623292 chr3R_25622668_25623215;chr3R_25623292_25623498 0.00 NA 0.00 2.00 0.00 0.00 0.00 0.00 1.61 NA 0.00 0.00 0.00 3.45 0.00 4.65 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 13.33 0.00 0.00 0.00 0.00 2.27 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.76 0.00 NA 4.44 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 K jcn_only_AD I_chr2R_11986525_11986583,mRpL34,RI_chr2R_11991687_11992537 chr2R + chr2R_11986521_11986583 chr2R_11986525_11986583 chr2R_11986584_11986683;chr2R_11986476_11986520 1.09 0.00 0.00 2.30 0.00 2.33 2.86 3.37 2.27 NA 0.00 1.47 0.00 0.00 NA 0.00 NA 4.35 NA 2.99 0.00 NA NA 5.88 NA NA NA NA 4.35 NA NA 0.00 NA 1.49 NA NA 2.22 0.00 2.17 0.00 NA 0.71 4.17 NA 1.79 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 3.17 1.61 K intron_retention msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2567289_2567369 chr3L_2567288_2567289;chr3L_2567369_2567370 chr3L_2567046_2567288;chr3L_2567370_2567814 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.17 0.00 0.00 0.25 1.08 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette shot,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9753001_9753565 chr2R_9753001_9753261;chr2R_9753411_9753565 chr2R_9753262_9753410 chr2R_9752056_9753000;chr2R_9753566_9753631 0.68 0.62 0.65 1.03 0.60 0.65 0.81 1.23 0.41 1.94 0.69 0.66 0.83 0.75 0.63 1.12 0.56 0.61 0.68 0.54 0.90 1.63 0.77 0.50 1.52 1.64 2.08 2.05 0.00 0.00 1.11 0.00 0.73 0.77 1.03 0.93 0.66 0.82 0.00 0.53 1.19 0.93 0.00 0.00 0.76 0.00 0.50 1.23 0.67 0.62 0.00 0.00 0.88 0.00 0.51 0.52 0.98 1.33 K alternative_donor CG34394,I_chr2L_3365674_3365965 chr2L - chr2L_3361444_3362442 chr2L_3361444_3362415 chr2L_3360996_3361443;chr2L_3362443_3362718 87.50 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA 67.65 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA 87.50 NA 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Xrp1,I_chr3R_14741648_14750799,I_chr3R_14750298_14750799 chr3R + chr3R_14741648_14745144 chr3R_14741647_14741648;chr3R_14745144_14745145 chr3R_14741548_14741647;chr3R_14745145_14745234 1.06 0.00 1.18 0.55 2.00 0.00 1.27 1.42 2.48 0.00 3.77 1.30 0.00 2.90 1.98 1.61 2.78 1.59 0.93 1.61 4.48 1.55 0.86 1.06 0.00 0.00 1.82 5.83 8.77 4.62 0.61 2.86 0.00 1.78 0.00 3.28 3.45 0.00 0.00 1.11 0.00 1.80 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 2.11 0.00 0.00 2.78 K intron_retention Pak,RI_chr3R_2181143_2181934 chr3R + chr3R_2183063_2184004 chr3R_2183062_2183063;chr3R_2184004_2184005 chr3R_2182472_2183062;chr3R_2184005_2184744 3.08 2.30 3.70 4.81 2.99 2.70 4.27 0.94 2.62 3.08 0.00 2.70 1.79 5.97 1.27 2.20 2.94 1.20 1.47 2.96 0.00 5.76 6.16 2.61 6.49 8.47 6.06 7.14 10.64 3.30 0.00 5.26 4.00 2.46 3.95 8.05 4.49 5.94 5.51 4.32 0.00 1.38 0.00 4.00 3.36 6.19 3.70 3.45 2.61 4.44 2.27 0.00 1.94 5.48 2.00 2.44 5.88 2.15 K jcn_only_AD Dscam,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3249373_3250528;chr2R_3249373_3251682;chr2R_3249373_3254309;chr2R_3249373_3253447;chr2R_3249373_3252522;chr2R_3249373_3252236;chr2R_3249373_3252816;chr2R_3249373_3253970;chr2R_3249373_3250836;chr2R_3249373_3251099 chr2R_3249373_3251960 chr2R_3249273_3249372 4.00 0.00 8.51 3.12 4.00 9.68 5.00 0.00 4.88 4.55 NA 5.88 5.41 8.82 0.00 3.77 5.56 0.00 0.00 10.00 4.00 8.75 4.29 2.78 8.51 4.00 8.11 3.23 1.79 3.53 7.84 3.57 3.75 7.27 6.45 0.00 0.00 5.26 2.44 2.25 3.45 4.62 6.25 1.72 0.00 7.89 8.33 5.81 10.45 NA 0.00 0.00 6.45 NA 1.92 0.00 NA 8.70 K cassette zip,I_chr2R_20878796_20879147 chr2R - chr2R_20878796_20879332 chr2R_20878796_20879087;chr2R_20879222_20879332 chr2R_20879088_20879221 chr2R_20878696_20878795;chr2R_20879333_20879496 0.41 0.27 0.24 0.20 0.00 0.49 1.20 0.58 0.25 0.47 0.71 0.78 1.29 0.27 0.38 0.90 0.51 0.28 0.60 0.84 0.58 4.29 0.23 0.45 0.36 1.53 0.26 0.38 0.44 0.34 0.41 0.47 0.36 0.44 0.34 0.41 0.00 0.68 0.62 0.46 0.37 0.65 0.25 0.00 0.34 0.62 0.47 0.31 0.73 0.39 0.23 0.84 0.31 0.64 0.36 0.24 0.31 0.27 K jcn_only_AA aux chr3R + chr3R_52414_52485 chr3R_52414_52472 chr3R_52252_52413;chr3R_52486_53244 100.00 100.00 100.00 100.00 100.00 100.00 99.19 100.00 100.00 100.00 100.00 99.37 100.00 100.00 100.00 100.00 100.00 98.57 100.00 100.00 100.00 100.00 100.00 99.36 98.94 100.00 100.00 97.10 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG17082,I_chr2R_632143_635290,R_chr2R_642176_644740,I_chr2R_644094_644145,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_631984_636726;chr2R_632083_636726;chr2R_631907_636726;chr2R_631971_636726 chr2R_632143_636726 chr2R_636727_636891;chr2R_631902_631906 33.33 NA NA 35.71 NA NA 37.50 33.33 23.53 NA NA 33.33 40.00 20.00 NA 43.75 12.50 NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA K alternative_last_exon bwa,I_chr2L_20069515_20073377,I_chr2L_20073310_20073377 chr2L + chr2L_20072647_20073377 chr2L_20072647_20073138 chr2L_20073378_20073731 chr2L_20073139_20073207 chr2L_20072354_20072646 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG11163,I_chr2R_1666219_1669711 chr2R - chr2R_1662576_1662764 chr2R_1662576_1662630 chr2R_1662507_1662575 99.04 99.11 100.00 99.22 98.77 99.04 100.00 99.26 98.96 98.15 98.86 98.44 100.00 98.20 99.09 98.20 98.84 99.03 98.04 98.99 98.90 100.00 98.75 97.78 100.00 98.53 97.44 100.00 97.92 100.00 98.44 97.70 100.00 98.72 95.18 95.71 98.52 98.13 100.00 100.00 98.31 98.92 98.84 100.00 100.00 99.19 99.27 100.00 99.11 97.47 100.00 100.00 100.00 100.00 100.00 99.37 99.07 99.42 K intron_retention Lag1,RI_chrX_6153758_6161036,I_chrX_6160907_6161036 chrX - chrX_6153268_6153344 chrX_6153267_6153268;chrX_6153344_6153345 chrX_6152930_6153267;chrX_6153345_6153566 0.25 0.97 0.00 0.34 0.00 0.65 0.19 0.58 0.86 0.45 0.00 0.34 0.00 0.00 0.47 0.00 0.00 0.00 0.47 0.62 0.50 0.33 0.57 0.00 0.00 0.00 0.52 0.44 0.68 0.00 0.00 0.00 0.25 0.34 0.92 0.38 0.45 0.00 0.48 0.17 0.52 0.69 0.00 0.00 0.00 0.50 0.00 0.00 0.60 0.00 0.53 0.55 0.00 0.00 0.00 0.00 0.00 0.33 N alternative_donor e(r) chrX - chrX_8799622_8800141;chrX_8799622_8799982 chrX_8799622_8799801 chrX_8799538_8799621;chrX_8800142_8800333 2.92 2.08 1.83 3.77 1.50 3.41 2.53 3.31 2.72 2.67 0.99 3.25 1.53 4.12 4.27 3.23 3.12 2.68 3.03 5.05 3.81 2.22 1.49 2.23 3.85 4.42 3.38 5.00 6.35 1.94 1.82 5.77 2.97 3.45 2.59 3.75 1.49 1.72 2.27 5.22 3.37 2.31 4.44 2.74 8.57 4.10 2.50 12.20 2.82 2.58 2.92 1.28 2.88 2.52 3.76 1.60 2.62 9.09 K alternative_acceptor CG14133 chr3L - chr3L_11683209_11683325;chr3L_11683229_11683325 chr3L_11683239_11683325 chr3L_11683326_11683412;chr3L_11682731_11683208 22.09 15.38 33.33 33.33 38.46 18.75 33.33 20.00 21.95 NA 25.00 23.53 20.00 20.00 45.45 31.25 25.00 33.33 18.18 21.21 22.22 NA 20.00 NA NA 37.50 NA NA NA 23.08 15.79 20.00 18.75 27.27 NA NA 23.53 18.18 30.00 20.00 NA 25.00 28.57 11.11 30.77 25.00 15.38 8.33 27.27 8.33 12.50 NA 0.00 16.67 35.29 20.00 12.50 23.08 K jcn_only_AA MB8.chr3R.pasa.66,CG1234,CG1227 chr3R - chr3R_3072539_3072596 chr3R_3072545_3072596 chr3R_3072597_3072717;chr3R_3070932_3072538 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.65 K cassette CG1674,I_chr4_253475_257020,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_254972_257020 chr4_254972_255489;chr4_255571_257020 chr4_255490_255570 chr4_254893_254971;chr4_257021_257101 0.00 0.00 0.00 5.56 NA 0.00 0.00 2.27 1.47 NA NA 1.89 0.00 3.45 0.00 2.08 0.00 NA 4.17 0.00 NA NA 5.56 4.76 NA NA 6.67 NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA 0.00 NA 2.78 0.00 5.56 NA NA NA NA 1.96 NA 3.85 0.00 NA NA 4.76 NA 0.00 0.00 K alternative_donor Npc2b,I_chr3R_9916602_9917530 chr3R + chr3R_9916599_9917019 chr3R_9916602_9917019 chr3R_9917020_9917123;chr3R_9916502_9916598 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG16833,I_chr2L_10994022_10994325,I_chr2L_10994919_10997334 chr2L + chr2L_10990784_10991058 chr2L_10990783_10990784;chr2L_10991058_10991059 chr2L_10990117_10990783;chr2L_10991059_10991885 20.94 NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA 7.69 NA NA NA NA NA 11.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette Slip1,RI_chr4_684967_689045,I_chr4_685717_686576,RI_chr4_685717_689045,RI_chr4_687548_689045 chr4 + chr4_684967_686576 chr4_684967_685613;chr4_685932_686576 chr4_685614_685931 chr4_684914_684966;chr4_686577_686676 86.96 86.67 93.75 98.46 86.96 84.00 85.19 88.00 82.50 100.00 100.00 87.50 85.19 87.50 87.50 80.95 80.56 100.00 82.93 86.25 96.15 87.50 87.88 84.00 89.47 77.14 96.43 100.00 81.25 77.42 91.43 84.21 94.44 79.75 85.71 96.43 95.83 86.67 88.00 86.49 90.00 81.25 86.21 84.62 88.89 88.57 93.75 97.06 83.87 89.47 86.84 88.89 71.43 75.00 84.78 84.21 86.96 78.05 K intron_retention Mmp1,E_chr2R_20560380_20562585,I_chr2R_20564123_20565214,I_chr2R_20569965_20572193 chr2R - chr2R_20559830_20562495 chr2R_20559829_20559830;chr2R_20562495_20562496 chr2R_20559732_20559829;chr2R_20562496_20562664 8.46 6.33 7.93 4.98 6.53 6.42 9.27 5.10 8.06 5.79 13.64 16.26 8.57 8.23 8.33 8.90 8.61 5.93 6.47 6.35 10.00 9.06 7.72 6.96 9.09 9.49 7.42 12.57 17.70 9.58 7.79 11.45 10.62 6.77 9.05 12.02 5.83 5.87 6.74 6.87 10.70 7.31 9.09 8.79 8.56 8.46 6.31 15.65 7.95 12.50 8.97 7.32 13.48 8.82 6.12 8.18 10.02 18.57 K jcn_only_AA Pur-alpha,I_chr4_581447_585166 chr4 + chr4_585289_586035 chr4_585289_586032 chr4_585180_585288;chr4_586036_586083 34.78 NA NA NA NA NA NA 45.45 34.78 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.00 NA NA NA NA NA NA NA NA NA K intron_retention PNGase,I_chr2R_1906759_1906817,I_chr2R_1906899_1906977 chr2R + chr2R_1905714_1905768 chr2R_1905713_1905714;chr2R_1905768_1905769 chr2R_1905320_1905713;chr2R_1905769_1905860 6.76 2.13 8.79 10.07 7.41 8.54 4.76 8.90 6.29 8.11 6.90 9.77 4.41 7.23 8.79 8.18 4.48 7.79 6.52 5.30 9.26 4.21 10.78 5.68 3.51 6.67 16.22 8.06 1.05 0.00 13.16 7.69 3.67 6.56 8.22 14.00 6.86 6.10 8.55 5.10 5.66 6.76 8.06 6.41 3.45 10.19 6.00 6.77 6.99 5.41 6.48 3.92 3.28 9.43 6.06 9.09 2.97 2.61 K intron_retention CG30421 chr2R + chr2R_20643497_20643560 chr2R_20643496_20643497;chr2R_20643560_20643561 chr2R_20642709_20643496;chr2R_20643561_20644462 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 1.69 0.00 0.00 0.00 10.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor MB8.chr3R.pasa.66,Alh,I_chr3R_2927820_2933442,RI_chr3R_2946518_2946663 chr3R - chr3R_2925245_2926858 chr3R_2926268_2926858 chr3R_2926859_2927219;chr3R_2924548_2925244 8.52 6.25 6.67 9.09 7.14 8.33 5.56 9.52 5.71 5.56 10.00 21.62 11.11 20.00 5.26 4.76 NA 5.88 6.67 5.56 6.67 13.51 10.00 14.29 16.67 7.69 12.00 15.00 14.29 14.29 5.26 16.67 15.00 5.26 4.76 14.29 9.09 9.09 7.32 11.43 14.29 6.90 6.67 11.76 12.50 10.53 9.09 12.00 7.14 3.85 8.70 6.67 5.88 7.69 0.00 6.25 5.88 30.00 K intron_retention und chr2L + chr2L_9763735_9763835 chr2L_9763734_9763735;chr2L_9763835_9763836 chr2L_9763520_9763734;chr2L_9763836_9764648 0.66 0.79 0.00 1.61 0.00 0.00 0.66 0.00 0.00 0.85 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 1.47 0.38 0.00 3.55 0.00 1.14 5.88 1.85 3.62 2.17 6.57 0.00 5.21 0.00 1.43 0.00 1.77 6.40 1.91 0.83 2.22 1.98 1.66 0.44 0.00 2.15 0.00 2.91 0.71 1.46 0.00 0.75 2.41 0.00 1.19 0.00 0.00 0.00 0.00 0.44 K intron_retention mud chrX + chrX_14142192_14142257 chrX_14142191_14142192;chrX_14142257_14142258 chrX_14141880_14142191;chrX_14142258_14142432 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 NA NA 0.00 0.00 0.00 7.14 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 3.85 4.44 11.43 NA NA NA 6.25 NA NA 0.00 0.00 25.00 0.00 0.00 0.00 0.00 NA 2.17 3.45 NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA N intron_retention spin,I_chr2R_12013288_12013847 chr2R + chr2R_12022823_12023531 chr2R_12022822_12022823;chr2R_12023531_12023532 chr2R_12023532_12023630 78.26 NA NA 56.52 NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA lkb1 chr3R + chr3R_9502667_9502743 chr3R_9502667_9502737 chr3R_9502444_9502666;chr3R_9502744_9503934 95.55 97.37 94.12 94.74 NA 92.59 100.00 100.00 94.23 NA NA 94.23 NA NA NA 94.44 100.00 NA 92.59 96.15 95.24 90.32 96.36 97.06 100.00 NA 95.12 95.45 97.62 95.65 88.00 100.00 97.10 94.12 97.14 94.29 97.56 96.67 95.12 93.62 92.68 92.00 87.50 96.55 100.00 98.41 96.97 95.24 98.04 92.86 97.92 96.67 95.00 NA 96.15 97.22 90.32 92.86 K intron_retention CG32138 chr3L + chr3L_14062497_14062991 chr3L_14062496_14062497;chr3L_14062991_14062992 chr3L_14062186_14062496;chr3L_14062992_14063021 25.93 23.08 34.78 40.00 36.84 30.00 36.11 31.71 23.44 14.29 26.32 16.67 33.33 38.10 25.93 27.59 29.63 13.16 34.38 24.14 33.33 13.33 27.50 23.53 30.77 19.35 34.62 43.75 40.00 42.86 16.28 6.25 26.32 23.81 29.41 0.00 15.69 15.38 16.67 34.62 20.69 25.93 15.38 21.43 10.53 25.93 27.27 24.14 30.23 16.67 30.56 26.67 0.00 33.33 24.32 19.23 18.18 20.00 K jcn_only_AA CycB,I_chr2R_18692089_18692164 chr2R - chr2R_18693064_18693171 chr2R_18693070_18693171 chr2R_18693172_18693380;chr2R_18692165_18693063 97.27 99.28 95.93 97.07 95.60 96.30 98.10 96.89 97.29 96.72 98.86 95.79 98.85 98.08 97.37 97.92 96.94 98.15 100.00 97.45 95.19 100.00 98.58 96.93 95.51 99.34 97.10 96.97 97.96 97.20 98.08 97.17 98.33 97.27 97.84 100.00 96.72 97.40 96.51 98.26 95.45 97.08 98.33 94.74 98.55 96.36 95.04 95.73 95.69 96.88 97.84 100.00 96.61 96.52 99.36 95.54 100.00 97.54 K jcn_only_AA Tao-1,E_chrX_19467010_19469645 chrX - chrX_19467498_19469390 chrX_19469008_19469390 chrX_19469391_19470002;chrX_19467324_19467497 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.19 1.25 0.00 1.88 0.00 0.00 0.39 0.00 0.00 0.47 0.46 1.00 0.56 1.79 0.00 0.00 0.00 0.00 0.93 0.00 0.62 0.41 0.00 0.90 0.48 0.00 0.00 0.00 0.22 0.00 0.52 1.28 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.45 1.02 0.00 0.37 0.00 0.00 0.63 0.91 0.00 0.00 0.54 K intron_retention None chrU + chrU_1179335_1183262 chrU_1179334_1179335;chrU_1183262_1183263 4.08 3.96 4.35 18.18 3.90 1.83 10.00 6.72 5.38 5.26 8.47 5.77 9.91 7.48 4.32 4.65 0.00 2.53 5.52 3.66 2.90 0.00 2.17 4.30 4.35 2.06 3.06 5.56 4.40 5.33 5.11 0.00 2.60 4.43 2.86 4.71 0.00 3.85 2.82 2.30 2.56 4.76 7.77 4.08 2.04 2.82 2.56 5.21 6.18 0.00 5.61 4.29 2.50 1.23 3.85 4.49 1.77 1.79 K cassette nompB chr2L - chr2L_21578530_21578730 chr2L_21578530_21578589;chr2L_21578677_21578730 chr2L_21578590_21578676 chr2L_21578522_21578529;chr2L_21578731_21579376 6.67 NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA Start1,I_chr2R_20463661_20463716 chr2R + chr2R_20464631_20464698 chr2R_20464631_20464675 chr2R_20464089_20464630;chr2R_20464699_20464822 0.00 0.00 5.17 1.79 0.00 0.00 1.15 0.00 0.79 4.76 0.00 1.19 2.13 0.00 0.00 0.00 0.00 0.00 1.30 1.85 0.00 1.45 0.00 0.00 2.33 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 1.22 0.00 2.86 0.00 0.00 0.00 1.32 0.00 3.57 0.00 0.00 1.82 2.53 3.45 0.00 2.29 0.00 2.70 0.00 0.00 0.00 1.30 3.23 0.00 0.00 K alternative_acceptor PRL-1,RI_chr2L_16249092_16250080,I_chr2L_16250028_16250080 chr2L - chr2L_16249722_16250080;chr2L_16249707_16250080;chr2L_16249092_16250080 chr2L_16250028_16250080 chr2L_16250081_16250158;chr2L_16248992_16249091 0.32 0.00 0.00 0.37 1.11 0.79 0.35 0.30 0.28 0.00 0.86 0.38 0.00 0.62 0.00 0.32 0.70 0.00 0.00 0.29 0.00 0.98 0.00 0.00 0.00 0.00 1.37 1.03 0.00 0.00 0.60 1.37 0.77 0.35 0.95 0.81 0.00 0.00 0.00 0.96 1.18 0.34 0.00 0.53 1.27 0.75 0.00 0.52 0.31 0.00 0.67 0.86 0.00 0.00 0.60 0.00 0.00 1.14 K intron_retention CG8258 chr2R - chr2R_4793084_4793147 chr2R_4793083_4793084;chr2R_4793147_4793148 chr2R_4792332_4793083;chr2R_4793148_4794170 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.52 0.00 0.00 0.00 0.19 0.22 0.00 0.00 0.00 0.00 0.00 0.27 0.51 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.21 0.10 0.49 0.38 0.00 0.11 0.16 0.18 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 N cassette CG7777,I_chr2R_7323928_7328572 chr2R + chr2R_7327836_7329439 chr2R_7327836_7328572;chr2R_7329126_7329439 chr2R_7328573_7329125 chr2R_7327692_7327835;chr2R_7329440_7329695 100.00 100.00 100.00 87.14 100.00 92.86 86.27 93.75 94.71 100.00 100.00 95.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.41 91.26 86.42 94.37 100.00 100.00 100.00 90.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.17 100.00 100.00 100.00 K intron_retention EI_chr3R_4647896_4648190,CG8379 chr3R + chr3R_4651131_4651354 chr3R_4651130_4651131;chr3R_4651354_4651355 chr3R_4650677_4651130;chr3R_4651355_4652310 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG16791 chr3R - chr3R_17149940_17160248 chr3R_17149949_17160248 chr3R_17160249_17160421;chr3R_17149849_17149939 80.00 76.92 90.00 71.43 NA NA 80.00 88.89 85.00 NA 87.50 80.00 100.00 70.00 66.67 77.78 75.00 85.71 91.67 73.68 NA NA 63.64 60.00 NA 80.00 66.67 NA NA NA 66.67 NA 88.89 78.95 60.00 NA NA 87.50 91.67 76.92 75.00 76.47 88.89 81.82 NA 77.78 NA 100.00 81.82 85.71 91.67 87.50 66.67 NA 66.67 66.67 NA 100.00 N jcn_only_AA RpL13A,I_chr3R_1450243_1451235,EI_chr3R_1450853_1451054,snoRNA:Me28S-U2134b,snoRNA:Me28S-U2134a chr3R + chr3R_1450853_1451134;chr3R_1450853_1451054 chr3R_1450853_1451235 chr3R_1450753_1450852;chr3R_1451236_1451335 99.92 99.93 99.95 99.95 99.88 99.90 99.67 99.96 99.96 99.87 99.91 99.95 99.91 99.87 99.93 99.92 99.91 99.98 99.93 99.93 99.97 99.90 99.92 99.92 99.89 99.80 99.87 99.76 99.85 99.96 99.91 99.94 99.89 99.94 99.91 99.82 99.94 99.96 99.96 99.93 99.52 99.93 99.94 99.90 99.96 99.88 99.93 99.84 99.86 99.88 99.86 99.95 99.95 99.88 99.91 99.94 99.93 99.91 N alternative_donor Inos,I_chr2R_3344353_3345211 chr2R - chr2R_3344353_3346113;chr2R_3344353_3345211;chr2R_3344353_3346212 chr2R_3344353_3344799 chr2R_3344253_3344352;chr2R_3346213_3346215 0.37 0.16 0.28 0.39 0.27 0.46 0.50 0.36 0.25 0.28 0.23 0.46 0.17 0.48 0.46 0.66 0.31 0.52 0.45 0.23 0.22 1.30 0.37 0.32 0.36 0.35 0.46 0.86 1.17 0.48 0.59 0.47 0.26 0.37 0.51 0.39 0.29 0.21 0.30 0.38 0.33 0.37 0.45 0.41 0.27 0.43 0.43 0.60 0.30 0.26 0.26 0.60 0.16 0.29 0.46 0.26 0.17 0.34 K intron_retention CG5147 chr3L - chr3L_18101749_18101820 chr3L_18101748_18101749;chr3L_18101820_18101821 chr3L_18101680_18101748;chr3L_18101821_18102200 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 5.77 3.23 10.87 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.75 0.00 0.00 0.00 3.12 2.78 0.00 2.60 3.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.49 K intron_retention CG30389,CEF_chr2R_17041552_17043191,I_chr2R_17044803_17047935 chr2R - chr2R_17043036_17043109 chr2R_17043035_17043036;chr2R_17043109_17043110 chr2R_17042909_17043035;chr2R_17043110_17043173 55.77 51.06 50.98 60.71 41.94 55.88 76.06 60.00 56.18 58.70 53.19 52.17 48.72 51.61 57.78 57.69 60.61 55.56 54.05 50.77 61.11 54.10 45.54 40.54 61.54 54.29 54.43 67.74 70.37 46.43 41.94 70.27 79.12 56.36 55.77 61.02 48.28 43.94 48.78 52.08 83.64 57.83 60.87 73.12 74.19 66.07 55.36 60.00 54.24 63.08 45.71 59.65 43.33 53.57 52.17 57.58 60.00 48.84 K alternative_donor CG10992,RI_chrX_13675767_13676018 chrX - chrX_13675767_13675842;chrX_13675767_13676018 chrX_13675767_13675872 chrX_13675699_13675766;chrX_13676019_13676118 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Cortactin chr3R - chr3R_16890086_16890144 chr3R_16890085_16890086;chr3R_16890144_16890145 chr3R_16890017_16890085;chr3R_16890145_16890185 95.56 92.59 95.56 91.25 97.22 96.77 94.55 82.09 95.56 94.44 87.50 94.64 96.43 97.44 96.23 94.94 97.37 97.14 93.48 88.35 95.00 90.32 97.78 98.11 96.15 93.02 100.00 100.00 100.00 78.57 88.68 92.86 90.00 94.55 100.00 100.00 98.18 96.88 100.00 97.56 100.00 95.18 89.19 91.30 82.35 96.55 100.00 90.91 93.67 100.00 96.77 100.00 91.67 88.89 93.10 100.00 97.30 75.00 K cassette eIF4G,RI_chr4_947288_948286,I_chr4_948813_950447 chr4 - chr4_947288_950447 chr4_947288_948018;chr4_948778_950447 chr4_948019_948777 chr4_947188_947287;chr4_950448_950547 7.59 6.02 5.08 3.76 1.60 1.43 4.76 4.36 5.67 21.15 21.00 5.11 3.01 5.56 5.95 8.33 5.36 7.50 5.00 4.88 15.05 11.49 7.50 8.96 10.07 11.84 6.56 9.17 21.54 11.57 7.59 14.29 13.39 5.68 10.28 5.33 10.00 7.77 8.63 10.67 17.86 6.43 7.37 7.94 11.11 16.36 8.00 20.99 5.90 11.86 7.48 8.40 6.67 8.57 5.70 6.78 5.81 10.14 K alternative_donor Eph,I_chr4_631523_634240,I_chr4_631555_631910,I_chr4_631643_631910,I_chr4_639690_640473,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_631555_631910;chr4_631643_631910 chr4_631523_631910 chr4_631911_632010;chr4_631455_631522 100.00 NA 100.00 82.35 NA 100.00 97.06 100.00 95.92 NA NA 97.56 91.30 100.00 100.00 98.33 100.00 100.00 100.00 97.30 NA NA 100.00 100.00 NA NA 94.74 NA NA NA 100.00 NA NA 97.67 100.00 NA NA NA NA 100.00 NA 100.00 100.00 87.50 NA NA NA 100.00 95.12 NA 100.00 NA NA NA 100.00 NA NA NA K intron_retention Ca-P60A,RI_chr2R_19820338_19820541,I_chr2R_19820338_19821424,CEI_chr2R_19820338_19821830,I_chr2R_19820338_19823289 chr2R - chr2R_19820338_19821213 chr2R_19820337_19820338;chr2R_19821213_19821214 chr2R_19820238_19820337;chr2R_19821214_19821276 1.75 0.00 2.44 2.25 0.00 0.00 5.48 1.72 1.78 0.00 3.92 3.82 0.00 2.99 2.53 1.15 0.00 1.64 2.60 1.37 1.72 53.33 3.85 8.00 9.09 0.00 15.38 NA 13.04 8.33 1.92 0.00 6.25 1.94 13.04 10.00 8.11 0.00 0.00 4.88 17.65 1.45 0.00 10.53 0.00 0.00 0.00 13.04 1.53 0.00 2.63 0.00 0.00 NA 0.00 NA 0.00 0.00 N intron_retention CG11357,I_chr3L_4542781_4542858,C_chr3L_4563905_4578759 chr3L + chr3L_4542249_4551001 chr3L_4542248_4542249;chr3L_4551001_4551002 chr3L_4542167_4542248;chr3L_4551002_4551938 100.00 100.00 100.00 71.67 100.00 100.00 100.00 100.00 100.00 NA 53.33 89.47 100.00 100.00 100.00 87.06 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 82.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 87.10 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA K intron_retention CG11504 chr3R + chr3R_25823929_25823992 chr3R_25823928_25823929;chr3R_25823992_25823993 chr3R_25823519_25823928;chr3R_25823993_25825473 39.13 27.27 47.62 50.00 37.50 56.25 31.58 36.00 36.73 40.00 32.00 31.71 25.00 50.00 42.86 38.46 29.41 35.29 42.86 32.65 47.06 78.12 58.82 26.00 60.00 58.82 50.00 52.78 52.78 43.48 40.00 40.91 41.03 39.13 47.83 46.88 33.33 30.56 28.00 35.42 55.56 41.03 40.00 37.04 23.68 32.26 32.00 39.13 28.57 36.00 36.59 42.86 23.08 31.25 45.00 36.00 39.47 28.57 K intron_retention CG10576,snoRNA:Psi18S-1397,I_chr3L_5756877_5757511,I_chr3L_5758117_5758186 chr3L - chr3L_5755816_5756147 chr3L_5755815_5755816;chr3L_5756147_5756148 chr3L_5755688_5755815;chr3L_5756148_5756373 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG33087,EI_chr2R_4062337_4074409 chr2R + chr2R_4112633_4112767 chr2R_4112633_4112755 chr2R_4112506_4112632;chr2R_4112768_4113243 2.44 1.03 1.83 1.32 0.00 5.71 1.55 1.65 2.44 0.98 3.88 1.05 2.99 5.32 1.85 2.96 2.63 3.25 3.79 1.93 2.83 0.67 0.62 1.90 3.03 3.64 1.44 3.64 2.53 3.80 2.22 3.15 3.70 3.68 2.30 2.46 1.49 1.15 2.60 1.02 1.12 0.00 3.19 2.35 1.74 2.53 0.69 3.16 2.60 4.08 1.69 6.78 1.43 0.97 1.35 3.36 3.51 2.94 K intron_retention Hexo1,F_chr3L_4292778_4292830 chr3L + chr3L_4289881_4289960 chr3L_4289880_4289881;chr3L_4289960_4289961 chr3L_4289246_4289880;chr3L_4289961_4291050 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 2.04 3.12 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 3.70 0.00 0.00 0.00 0.00 2.08 0.00 K jcn_only_AA CG2875 chrX - chrX_3467334_3467400 chrX_3467337_3467400 chrX_3467401_3467615;chrX_3466628_3467333 96.15 91.18 93.75 88.46 NA 100.00 93.88 96.67 97.30 NA NA 100.00 96.43 91.30 93.94 94.83 96.30 96.43 100.00 98.63 NA NA 90.00 95.00 NA 95.83 100.00 100.00 NA 100.00 100.00 NA NA 94.74 NA NA 93.10 NA NA 96.30 NA 96.23 95.65 90.32 NA 95.45 91.18 95.83 91.18 80.00 97.62 100.00 95.45 NA 97.56 96.30 100.00 96.15 N jcn_only_AA exba,RI_chr3R_1426370_1426736 chr3R - chr3R_1426031_1426736;chr3R_1423660_1426736;chr3R_1425087_1426736 chr3R_1426370_1426736 chr3R_1426737_1426835 0.80 0.80 0.00 0.16 0.68 0.00 0.00 0.15 0.45 2.00 1.21 2.16 0.80 0.27 0.32 0.73 0.00 0.38 1.33 0.90 0.98 0.26 0.56 1.68 2.33 0.75 1.65 2.74 1.29 0.72 0.30 3.87 1.64 0.73 0.41 1.23 1.25 0.00 1.09 1.47 1.32 0.87 0.73 0.68 1.55 2.26 0.59 0.62 0.29 1.69 0.86 0.52 0.00 0.88 0.83 1.55 0.25 3.17 K alternative_acceptor Itp-r83A,I_chr3R_1356147_1356224 chr3R + chr3R_1356147_1356271 chr3R_1356147_1356224 chr3R_1356136_1356146;chr3R_1356272_1356324 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 4.26 7.14 7.14 2.27 5.00 5.26 9.09 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 NA 2.50 5.26 4.76 2.94 0.00 NA 0.00 6.06 0.00 0.00 3.28 0.00 0.00 3.92 NA 0.00 4.35 5.56 NA NA 0.00 0.00 5.00 0.00 2.70 0.00 NA NA 0.00 NA NA 0.00 K intron_retention l(2)37Cg,I_chr2L_19133352_19133773 chr2L - chr2L_19133352_19133408 chr2L_19133351_19133352;chr2L_19133408_19133409 chr2L_19133252_19133351;chr2L_19133409_19133699 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 4.55 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 8.33 0.00 NA 0.00 0.00 0.00 0.00 2.50 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.13 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG9609 chrX - chrX_16680538_16680597 chrX_16680537_16680538;chrX_16680597_16680598 chrX_16679170_16680537;chrX_16680598_16681051 0.00 0.00 0.00 0.00 NA NA NA NA 0.00 NA NA 3.12 NA 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 5.88 23.53 NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA K intron_retention Pvr,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8225513_8225671 chr2L_8225512_8225513;chr2L_8225671_8225672 chr2L_8225486_8225512;chr2L_8225672_8226141 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 1.22 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 2.26 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG7530,I_chr3R_10551870_10552281,eff chr3R - chr3R_10551870_10552911 chr3R_10551870_10552281 chr3R_10551770_10551869;chr3R_10552912_10553011 0.61 0.00 0.00 0.00 0.86 0.00 0.73 2.31 1.02 0.00 3.41 0.45 0.00 0.68 0.61 1.65 2.34 2.48 1.55 0.37 4.55 0.00 1.10 2.08 1.64 0.00 1.54 5.17 0.00 1.08 0.68 0.00 0.00 1.42 0.00 2.94 0.00 0.00 1.40 0.38 0.00 0.39 0.00 0.57 0.00 0.64 0.00 1.01 0.00 1.08 0.00 1.06 0.00 1.28 1.27 0.00 1.65 0.53 K alternative_acceptor CG6838,I_chr3L_22709306_22709668 chr3L - chr3L_22710167_22710293 chr3L_22710181_22710293 chr3L_22710294_22710303;chr3L_22710071_22710166 94.12 97.14 100.00 96.36 89.47 97.06 96.00 87.27 89.19 89.19 85.29 90.67 91.43 96.55 87.50 86.00 89.66 93.94 86.84 94.03 96.67 86.96 97.56 91.30 96.77 97.73 95.74 87.88 98.31 100.00 92.50 97.83 96.74 90.62 94.12 97.87 85.42 84.21 87.50 93.33 98.48 90.79 96.55 95.12 95.45 98.61 94.74 96.94 90.67 97.62 93.62 94.12 90.24 94.59 91.49 90.62 96.15 99.02 K intron_retention RpL15 chr3LHet + chr3LHet_2398018_2398127 chr3LHet_2398017_2398018;chr3LHet_2398127_2398128 chr3LHet_2397802_2398017;chr3LHet_2398128_2398454 99.08 97.44 99.23 99.81 99.32 99.15 99.20 99.43 99.62 98.88 99.41 99.69 99.60 98.95 98.80 99.66 100.00 98.17 99.45 99.71 99.41 100.00 96.91 99.01 96.58 97.92 95.74 97.80 96.12 98.96 100.00 97.94 100.00 98.55 100.00 95.18 99.21 98.46 97.46 100.00 98.82 99.10 100.00 98.25 98.17 99.08 99.12 99.04 99.37 97.10 98.84 97.94 97.67 97.67 99.39 99.22 98.95 99.33 K intron_retention Vha16,I_chr2R_2519645_2520499,RI_chr2R_2519646_2519840,I_chr2R_2519646_2520292,I_chr2R_2519646_2520298,I_chr2R_2519775_2520499 chr2R - chr2R_2519646_2519828 chr2R_2519645_2519646;chr2R_2519828_2519829 chr2R_2519546_2519645;chr2R_2519829_2519868 25.40 27.55 23.16 26.53 25.40 22.81 55.73 40.83 25.32 21.14 25.59 32.06 31.36 27.78 26.80 33.84 28.03 24.08 31.50 28.10 22.46 20.10 27.39 21.66 38.93 50.57 38.30 22.22 47.15 19.42 23.96 21.59 28.85 32.51 35.40 56.84 19.72 18.23 14.22 29.11 45.59 20.96 25.20 26.01 17.07 22.52 16.31 23.64 22.83 20.00 29.17 31.33 15.62 30.19 25.16 22.58 18.14 18.92 K intron_retention CG9934 chr2L - chr2L_13013884_13013948 chr2L_13013883_13013884;chr2L_13013948_13013949 chr2L_13013318_13013883;chr2L_13013949_13014291 0.00 0.00 5.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 1.39 0.00 0.00 K cassette CE_chrX_20766225_20927825,CG1518 chrX - chrX_20922633_20923436 chrX_20922633_20922942;chrX_20923231_20923436 chrX_20922943_20923230 chrX_20922153_20922632;chrX_20923437_20923826 100.00 100.00 99.53 99.66 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.50 99.47 100.00 100.00 99.45 100.00 100.00 99.81 100.00 99.64 99.73 99.69 100.00 99.59 100.00 100.00 99.44 99.49 100.00 99.21 99.57 100.00 100.00 100.00 99.71 99.62 100.00 99.69 99.32 99.76 100.00 100.00 100.00 100.00 99.50 100.00 99.74 100.00 100.00 99.49 99.48 100.00 100.00 99.55 100.00 100.00 K intron_retention CG8675,Fim,I_chrX_17193096_17195392 chrX - chrX_17183071_17195392 chrX_17183070_17183071;chrX_17195392_17195393 chrX_17181960_17183070;chrX_17195393_17195492 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Chc,RI_chrX_15728405_15729273,I_chrX_15728405_15729401,I_chrX_15728946_15729357 chrX - chrX_15728405_15729260;chrX_15728405_15729476;chrX_15728405_15729357;chrX_15728405_15729319 chrX_15728405_15729370 chrX_15728305_15728404;chrX_15729477_15729501 1.14 0.83 1.60 1.56 1.72 0.82 1.63 0.50 1.46 0.00 0.00 1.42 0.00 1.08 1.22 2.05 2.13 3.09 0.84 1.34 1.57 2.21 1.79 0.74 0.83 5.41 0.00 0.00 2.60 0.00 0.75 2.33 0.00 1.21 1.50 1.52 1.10 1.52 1.04 1.59 0.00 0.31 0.57 3.68 NA 0.00 1.18 0.00 2.16 0.00 0.62 0.00 0.00 4.44 2.26 0.00 0.00 2.13 K intron_retention sec63 chr3L + chr3L_7356871_7356952 chr3L_7356870_7356871;chr3L_7356952_7356953 chr3L_7355622_7356870;chr3L_7356953_7357703 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 1.23 0.45 0.00 0.00 0.85 0.80 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.31 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.23 K intron_retention Bj1 chr3L - chr3L_5925565_5925624 chr3L_5925564_5925565;chr3L_5925624_5925625 chr3L_5925506_5925564;chr3L_5925625_5925725 82.05 84.78 72.09 73.91 75.00 83.33 90.00 76.27 79.63 85.71 75.00 77.92 79.49 78.57 81.25 77.55 88.24 78.57 85.11 75.00 82.05 88.64 92.00 83.75 92.45 90.48 90.91 86.84 96.67 90.32 80.56 73.68 70.37 82.09 88.24 93.94 76.47 72.73 78.57 86.96 86.96 81.55 78.05 84.09 82.05 86.49 85.11 86.67 76.85 84.48 84.62 78.95 90.00 88.57 78.69 81.13 81.16 78.43 K intron_retention CG6995 chr3R + chr3R_20644572_20645450 chr3R_20644571_20644572;chr3R_20645450_20645451 chr3R_20644527_20644571;chr3R_20645451_20646489 8.00 5.71 8.00 11.76 4.35 15.38 27.91 16.28 11.94 NA 0.00 11.11 12.90 0.00 7.69 16.22 0.00 15.79 9.09 7.55 0.00 0.00 14.71 5.88 11.76 0.00 11.43 5.00 0.00 0.00 14.81 0.00 2.22 15.38 5.26 6.06 8.33 3.57 2.27 10.81 4.35 14.29 17.39 11.54 0.00 12.12 4.55 11.54 14.00 0.00 14.29 0.00 0.00 8.00 19.35 8.70 5.71 12.90 K jcn_only_AD CG17490 chr2L + chr2L_22431088_22432684;chr2L_22431020_22432684;chr2L_22431301_22432684 chr2L_22431120_22432684 chr2L_22432685_22433056;chr2L_22431014_22431019 8.62 NA NA NA NA NA NA 17.24 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 K jcn_only_AD CG6695 chr3R + chr3R_20481203_20481293 chr3R_20481207_20481293 chr3R_20481294_20483132;chr3R_20480896_20481202 2.70 3.28 12.50 2.13 2.70 3.33 0.00 3.23 3.95 3.28 0.00 3.53 3.33 3.03 2.94 2.94 6.90 0.00 0.00 2.88 0.00 1.82 2.73 5.17 9.23 8.33 4.55 2.33 1.20 2.63 2.56 0.00 2.27 3.23 5.00 5.41 1.53 1.43 7.00 2.16 4.71 1.19 4.00 1.39 3.64 1.12 0.00 3.07 1.37 3.28 1.37 0.00 1.96 0.00 2.50 5.41 0.00 0.00 K intron_retention I_chr2R_5999081_6000140,E_chr2R_6001157_6001630,CG11866 chr2R + chr2R_6007864_6007916 chr2R_6007863_6007864;chr2R_6007916_6007917 chr2R_6007556_6007863;chr2R_6007917_6008956 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 2.04 7.69 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention crq,I_chr2L_452737_452797 chr2L - chr2L_450541_450665 chr2L_450540_450541;chr2L_450665_450666 chr2L_449435_450540;chr2L_450666_450878 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention mub,RI_chr3L_21901021_21901163,I_chr3L_21908756_21909179,CE_chr3L_21915743_21915791 chr3L + chr3L_21914428_21918279 chr3L_21914427_21914428;chr3L_21918279_21918280 chr3L_21914193_21914427;chr3L_21918280_21919094 0.00 0.00 10.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 6.67 0.00 0.00 4.35 NA NA NA 2.13 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 5.56 2.50 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.06 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 K alternative_donor CG11360,noncoding_20761,I_chr4_701221_705206,I_chr4_705000_705206 chr4 + chr4_691793_701065;chr4_692014_701065 chr4_692243_701065 chr4_701066_701220;chr4_691790_691792 33.33 33.33 25.00 66.67 75.00 50.00 33.33 35.29 36.84 50.00 40.00 22.73 33.33 36.36 25.00 33.33 50.00 50.00 23.08 27.27 25.00 28.57 46.15 33.33 NA 33.33 25.00 66.67 35.71 25.00 38.46 NA 57.14 26.67 40.00 30.77 42.86 28.57 NA 35.71 NA 42.86 30.00 28.57 NA 50.00 36.36 37.50 28.57 NA 36.36 28.57 37.50 33.33 33.33 33.33 NA NA K jcn_only_AD I_chrX_15223901_15223968,HDAC6,I_chrX_15232958_15233665 chrX + chrX_15232699_15233659;chrX_15232958_15233659 chrX_15232738_15233659 chrX_15233660_15234340;chrX_15232108_15232698 3.77 3.33 0.00 13.79 0.00 4.35 NA 12.82 3.77 NA NA 2.08 NA 9.52 13.64 NA 4.76 0.00 NA 5.56 5.00 3.85 2.04 2.33 3.03 20.83 0.00 4.35 10.00 3.12 2.44 12.00 6.38 7.89 0.00 3.85 2.30 3.85 2.99 5.08 3.03 0.00 5.00 12.90 1.54 9.62 2.38 3.70 6.25 3.33 2.78 0.00 7.84 5.17 3.23 2.86 1.67 7.14 K intron_retention mip120,I_chr2R_9394299_9394351,RI_chr2R_9394299_9395019,EfTuM chr2R + chr2R_9394299_9395019 chr2R_9394298_9394299;chr2R_9395019_9395020 chr2R_9394199_9394298;chr2R_9395020_9395119 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 4.55 NA NA 12.50 NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA K alternative_donor pgant6 chr3L + chr3L_2782497_2782737;chr3L_2782414_2782737 chr3L_2782556_2782737 chr3L_2782738_2783472;chr3L_2782330_2782413 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_last_exon ird1 chr3R - chr3R_5068175_5068554 chr3R_5068423_5068554 chr3R_5067541_5068174 chr3R_5068252_5068422 chr3R_5068555_5068768 0.00 4.55 0.00 0.00 0.00 0.00 0.00 4.76 2.78 0.00 0.00 3.33 14.29 0.00 5.00 6.25 0.00 7.14 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 3.57 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 K intron_retention Pvr,I_chr2L_8226604_8228082,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8226604_8227651 chr2L_8226603_8226604;chr2L_8227651_8227652 chr2L_8226504_8226603;chr2L_8227652_8227658 96.82 92.86 95.83 100.00 92.86 100.00 91.67 96.77 94.74 100.00 NA 92.45 96.67 100.00 100.00 100.00 100.00 100.00 96.88 98.18 100.00 NA 95.24 100.00 93.33 88.89 96.15 NA NA 100.00 93.75 NA 100.00 93.75 100.00 94.44 100.00 91.67 94.12 100.00 NA 97.78 93.33 100.00 NA 91.67 91.67 94.12 98.18 90.00 96.00 100.00 NA 100.00 100.00 100.00 NA 88.89 K jcn_only_AD Pp2A-29B,I_chr2L_8367210_8367311,I_chr2L_8369561_8369715 chr2L + chr2L_8366124_8367095 chr2L_8366395_8367095 chr2L_8367096_8367209;chr2L_8366118_8366123 100.00 100.00 100.00 98.75 99.67 100.00 100.00 99.52 99.88 100.00 100.00 99.68 100.00 100.00 99.76 99.84 100.00 99.70 100.00 99.87 100.00 100.00 99.79 100.00 99.67 100.00 99.79 100.00 100.00 100.00 99.35 99.49 100.00 100.00 100.00 100.00 99.76 100.00 99.34 99.81 100.00 99.86 99.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908142_9908424,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907784_9908424;chr2L_9908142_9908424 chr2L_9907848_9908424 chr2L_9908425_9908505;chr2L_9907756_9907783 8.86 8.70 8.57 13.46 15.38 9.52 14.29 8.86 10.81 14.29 8.00 13.51 13.33 8.51 11.11 8.45 10.20 6.98 8.77 8.79 10.71 10.00 3.80 4.08 7.32 4.88 7.94 11.54 7.89 8.62 11.43 12.00 13.24 9.41 4.76 4.62 9.62 9.30 8.51 9.46 7.69 9.47 3.70 8.33 18.18 5.00 8.57 10.71 8.00 11.11 11.27 10.26 9.38 4.55 6.78 8.57 10.00 7.89 K intron_retention eater chr3R - chr3R_22925222_22925280 chr3R_22925221_22925222;chr3R_22925280_22925281 chr3R_22925154_22925221;chr3R_22925281_22925345 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.62 0.00 5.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 N alternative_donor tefu,I_chr3R_11060517_11060585 chr3R - chr3R_11064906_11065001 chr3R_11064906_11064956 chr3R_11064882_11064905;chr3R_11065002_11065118 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 83.33 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 K intron_retention granny-smith,I_chr3R_8776241_8784793,I_chr3R_8782481_8782663,I_chr3R_8792471_8792881 chr3R - chr3R_8776050_8776129 chr3R_8776049_8776050;chr3R_8776129_8776130 chr3R_8775770_8776049;chr3R_8776130_8776240 0.00 0.00 0.00 2.48 0.00 0.00 0.00 0.91 0.93 0.00 0.00 1.70 0.00 0.00 1.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.32 0.00 0.00 0.00 4.07 0.00 0.00 0.00 1.43 0.62 0.00 0.65 0.00 0.00 0.00 0.91 0.46 0.73 0.93 0.00 0.00 0.88 1.05 0.61 0.75 0.00 0.00 0.00 0.00 0.70 0.00 1.98 0.00 1.13 1.42 K multi_cassette bip2,RI_chr4_481674_482028,RI_chr4_481674_487126,RI_chr4_482358_482702,RI_chr4_483128_487126,RI_chr4_483144_483680,RI_chr4_486609_487126 chr4 - chr4_481674_487126 chr4_481674_482130;chr4_482955_483013;chr4_483128_483680;chr4_485367_487126 chr4_482131_482954;chr4_483014_483127;chr4_483681_485366 chr4_481574_481673;chr4_487127_487226 100.00 88.89 100.00 93.33 85.71 100.00 100.00 100.00 96.43 100.00 100.00 90.00 100.00 100.00 91.67 87.50 91.67 83.33 93.75 89.47 100.00 100.00 100.00 88.89 100.00 100.00 88.89 100.00 80.00 100.00 77.78 100.00 80.00 96.00 100.00 100.00 100.00 100.00 100.00 84.62 80.00 100.00 91.67 100.00 100.00 100.00 87.50 100.00 100.00 100.00 92.31 83.33 80.00 100.00 100.00 100.00 77.78 100.00 K alternative_acceptor Amph,I_chr2R_8498227_8498492 chr2R + chr2R_8498227_8498513 chr2R_8498227_8498492 chr2R_8498127_8498226;chr2R_8498514_8498592 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 1.96 2.44 3.23 1.82 2.86 0.00 0.00 0.00 0.00 0.00 7.14 3.33 4.17 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 1.35 K jcn_only_AD RI_chr3R_5165997_5180143,CG33936,I_chr3R_5167726_5180143,R_chr3R_5168211_5180143,RI_chr3R_5168214_5168297,I_chr3R_5168617_5180143,snoRNA:Me18S-G1358a,RI_chr3R_5183458_5183705 chr3R + chr3R_5167726_5180143 chr3R_5168214_5180143 chr3R_5180144_5180232;chr3R_5167626_5167725 99.43 99.28 99.32 99.04 100.00 99.22 99.72 100.00 99.37 100.00 100.00 100.00 99.45 99.53 99.26 99.66 99.37 100.00 99.43 99.56 98.77 98.33 99.37 100.00 100.00 100.00 99.32 97.96 100.00 100.00 97.80 100.00 97.44 99.47 98.81 100.00 97.22 99.13 98.31 99.00 98.04 98.94 99.34 99.10 100.00 100.00 100.00 100.00 99.72 99.05 99.34 100.00 100.00 98.28 99.48 99.09 99.16 100.00 K jcn_only_AA CG31873 chr2L + chr2L_10270395_10270448 chr2L_10270395_10270440 chr2L_10270274_10270394;chr2L_10270449_10271235 3.71 0.00 0.00 5.88 NA 10.34 2.94 2.27 6.56 NA NA 6.15 NA 4.17 3.12 4.08 NA 0.00 4.17 3.85 NA NA 25.00 0.00 NA NA 3.85 0.00 NA 7.14 21.43 8.33 0.00 3.03 NA NA 8.33 4.00 4.76 3.23 5.71 0.00 3.57 0.00 NA 0.00 8.33 9.38 0.00 NA 2.38 NA 0.00 NA 3.03 NA 0.00 3.92 K intron_retention CG8184,I_chrX_15620707_15620769 chrX + chrX_15617191_15617265 chrX_15617190_15617191;chrX_15617265_15617266 chrX_15617180_15617190;chrX_15617266_15618411 93.89 91.84 97.67 98.57 94.12 89.74 98.15 93.22 93.62 92.59 89.19 96.55 97.44 95.00 91.49 88.46 96.55 91.67 92.50 92.78 94.12 96.30 94.38 95.45 94.64 98.08 92.19 83.33 93.83 95.40 94.00 97.67 93.89 89.61 92.31 96.43 91.00 87.93 93.18 91.92 96.23 93.41 96.67 93.94 87.88 96.67 88.57 94.86 97.06 96.67 92.19 97.62 88.57 94.44 91.84 94.29 93.75 90.54 K intron_retention MRP,I_chr2L_12727117_12729243,F_chr2L_12727117_12736035 chr2L + chr2L_12728799_12737958 chr2L_12728798_12728799;chr2L_12737958_12737959 chr2L_12728578_12728798;chr2L_12737959_12738176 100.00 NA NA 90.91 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA NA 94.74 100.00 NA 95.00 100.00 NA NA 93.75 100.00 NA 90.00 NA NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 91.67 NA 100.00 100.00 NA NA NA NA NA NA K jcn_only_AD nuf,RI_chr3L_14222180_14223121,RI_chr3L_14209985_14223275,CG7768,noncoding_12540,RI_chr3L_14213037_14218534,I_chr3L_14214604_14218530,I_chr3L_14222054_14222918,I_chr3L_14224426_14225035 chr3L + chr3L_14219504_14223275;chr3L_14223207_14223275 chr3L_14206304_14223275 chr3L_14223276_14223369 2.50 2.78 NA NA NA NA NA 0.00 0.00 9.09 NA 4.00 NA NA 0.00 NA NA NA NA 0.00 NA 6.67 7.55 4.55 4.76 NA 0.00 0.00 4.65 0.00 0.00 NA 12.00 NA NA NA 5.36 5.71 0.00 0.00 0.00 0.00 NA 2.50 NA 6.25 4.55 5.00 0.00 2.33 0.00 3.12 0.00 4.76 NA 0.00 2.50 14.29 K intron_retention I_chr2L_100704_100835,CG11377 chr2L + chr2L_102907_103005 chr2L_102906_102907;chr2L_103005_103006 chr2L_102395_102906;chr2L_103006_103434 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 K intron_retention yki chr2R - chr2R_19954778_19954987 chr2R_19954777_19954778;chr2R_19954987_19954988 chr2R_19954686_19954777;chr2R_19954988_19955750 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 K alternative_donor CG31278,noncoding_15893,RI_chr3R_6533509_6533568 chr3R - chr3R_6533509_6533568;chr3R_6533509_6533960 chr3R_6533509_6533579 chr3R_6533409_6533508;chr3R_6533961_6534040 88.46 88.24 93.33 96.30 85.71 100.00 94.12 90.00 85.71 60.00 87.50 80.77 90.00 85.71 84.21 92.86 100.00 88.89 93.75 89.29 84.62 88.89 76.19 80.95 87.50 94.44 66.67 94.44 95.45 92.31 65.31 100.00 93.33 86.36 77.78 85.00 84.62 86.96 90.00 78.95 100.00 92.31 90.91 82.35 100.00 90.00 86.96 84.62 90.62 80.95 88.46 83.33 85.00 82.35 93.75 86.96 93.94 93.10 K jcn_only_AD Crk,RI_chr4_231302_233315,RI_chr4_231307_231369,RI_chr4_231307_232217,I_chr4_231307_232253 chr4 + chr4_231302_232215 chr4_231307_232215 chr4_232216_232420;chr4_231208_231301 100.00 93.10 100.00 96.70 NA 100.00 100.00 97.71 94.23 100.00 96.55 100.00 100.00 97.14 97.56 98.70 97.73 96.97 96.88 97.18 95.45 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 NA 95.00 NA 96.67 100.00 98.78 100.00 100.00 100.00 97.14 100.00 98.96 98.81 100.00 100.00 100.00 NA NA 98.51 100.00 100.00 99.12 K alternative_donor I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545799_17545855;chr2R_17545781_17545855;chr2R_17545686_17545855 chr2R_17545615_17545855 chr2R_17545856_17545985;chr2R_17545613_17545614 41.67 40.00 69.23 70.37 73.33 80.95 50.00 75.00 63.64 0.00 60.00 73.91 71.43 69.23 80.00 70.59 81.82 73.91 66.67 77.78 84.62 12.50 0.00 16.67 20.00 69.23 20.00 0.00 11.11 20.00 64.29 25.00 33.33 69.57 NA NA 0.00 33.33 28.57 30.77 12.50 76.19 78.57 0.00 52.38 9.09 20.00 36.36 70.83 25.00 0.00 25.00 50.00 20.00 83.33 20.00 22.22 41.67 K jcn_only_AD Best1,I_chr3R_5991957_5995913,RI_chr3R_5993184_5995905 chr3R - chr3R_5989579_5990296;chr3R_5989579_5990440 chr3R_5989579_5990058 chr3R_5988921_5989578;chr3R_5990441_5990683 2.05 1.42 2.00 0.75 0.98 2.17 3.77 2.04 2.27 0.00 1.23 0.00 1.11 2.75 2.40 2.50 1.30 2.70 3.12 0.46 4.21 8.45 2.72 2.99 3.57 1.35 2.05 0.00 4.65 0.98 6.87 6.25 4.82 1.31 2.11 0.00 2.08 2.05 1.53 2.03 0.00 0.41 0.00 2.65 3.16 3.50 0.00 2.38 3.95 2.91 5.45 1.92 0.00 1.75 0.94 2.22 2.90 0.00 K alternative_acceptor CG9776 chr3R - chr3R_158200_158713 chr3R_158583_158713 chr3R_158714_158881;chr3R_158012_158199 7.81 5.71 5.00 3.12 6.25 3.33 10.00 4.69 7.81 7.69 6.90 5.33 16.67 13.79 7.14 22.73 6.90 0.00 19.05 7.58 7.41 8.89 3.30 10.00 9.38 9.52 9.52 3.70 6.25 10.81 18.18 13.64 12.24 8.33 8.11 7.69 7.55 6.90 8.89 17.50 3.57 8.75 7.69 9.68 6.25 10.71 6.90 9.09 8.06 12.12 6.90 16.67 2.78 13.04 8.82 9.68 7.41 2.70 K multi_cassette Nedd4,I_chr3L_17534504_17535990,I_chr3L_17535485_17536604,I_chr3L_17536186_17536604,I_chr3L_17536813_17536863 chr3L + chr3L_17535485_17536604 chr3L_17535485_17535689;chr3L_17535913_17535990;chr3L_17536063_17536604 chr3L_17535690_17535912;chr3L_17535991_17536062 chr3L_17535417_17535484;chr3L_17536605_17536704 77.28 75.00 80.00 NA NA NA 85.71 NA 87.50 81.82 NA 92.31 NA NA NA 83.33 NA NA NA 100.00 NA 55.56 60.00 80.00 80.00 NA 70.00 80.00 60.00 72.73 100.00 62.50 78.57 100.00 66.67 NA 90.91 85.71 88.89 65.22 57.14 71.43 NA 56.25 71.43 70.00 75.00 76.00 80.00 62.50 60.00 75.00 NA NA NA 100.00 NA 81.82 K intron_retention CG12393,CG9135 chr2L + chr2L_6048126_6048511 chr2L_6048125_6048126;chr2L_6048511_6048512 chr2L_6048106_6048125;chr2L_6048512_6048626 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG7843,I_chr2R_1972736_1972822 chr2R - chr2R_1971513_1972012 chr2R_1971513_1971673 chr2R_1971446_1971512;chr2R_1972013_1972292 12.24 10.42 8.16 15.07 11.36 10.87 12.94 11.43 12.17 13.04 8.11 8.79 15.00 14.29 12.90 12.35 10.53 10.87 9.84 9.89 9.52 9.52 13.85 8.93 17.14 3.61 14.81 15.79 14.71 16.22 40.66 19.23 13.21 13.04 11.76 20.00 10.87 16.67 8.51 13.16 17.65 9.65 18.60 22.92 12.00 10.42 10.00 14.75 12.24 9.26 14.52 11.76 12.00 12.50 15.49 11.63 4.69 13.21 K intron_retention RI_chrX_11473566_11473702,roX2,noncoding_23149,I_chrX_11475074_11475402 chrX + chrX_11473433_11473485 chrX_11473432_11473433;chrX_11473485_11473486 chrX_11473419_11473432;chrX_11473486_11473561 77.71 NA NA 88.89 NA NA 100.00 78.95 75.00 NA NA 75.00 70.00 NA NA 71.43 NA NA 88.89 78.95 NA NA NA 71.43 90.00 NA 92.31 NA NA NA 71.43 50.00 NA 93.33 88.89 NA NA NA NA 86.96 NA 66.67 NA 75.00 NA 68.75 NA NA 73.33 NA 88.89 87.50 NA NA 76.47 NA NA NA K intron_retention CG16718,E_chr3R_15462172_15464824,RI_chr3R_15464150_15464400,EI_chr3R_15465136_15466705 chr3R - chr3R_15463694_15463747 chr3R_15463693_15463694;chr3R_15463747_15463748 chr3R_15463573_15463693;chr3R_15463748_15463916 0.00 0.00 0.00 0.00 0.00 2.78 5.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 14.00 10.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.89 0.00 0.00 0.00 3.51 NA 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD bon chr3R + chr3R_16433390_16433716 chr3R_16433396_16433716 chr3R_16433717_16433800;chr3R_16432003_16433389 63.64 64.58 59.09 54.55 53.57 80.00 64.29 71.88 66.13 60.71 NA 59.38 56.00 62.07 52.17 61.11 72.00 65.52 53.33 65.67 69.57 50.91 64.18 62.22 51.28 NA 69.39 63.64 76.47 61.54 NA 45.45 66.67 70.83 46.67 59.57 61.70 66.67 58.14 33.33 NA 78.85 73.91 66.07 72.73 43.48 57.50 70.97 60.38 78.95 60.71 73.08 64.10 51.52 68.75 64.52 NA NA K intron_retention CG8202 chr3R + chr3R_4559713_4559769 chr3R_4559712_4559713;chr3R_4559769_4559770 chr3R_4559430_4559712;chr3R_4559770_4560080 0.00 0.00 0.00 0.00 0.00 NA 4.08 4.65 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K jcn_only_AD Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_150069_150307;chr4_150069_150180;chr4_150069_150353;chr4_150069_150295;chr4_150069_150205 chr4_150069_150378 chr4_149969_150068;chr4_150379_150379 0.00 NA NA 0.00 0.00 0.00 2.44 1.23 0.00 NA NA 0.00 0.00 0.00 0.00 1.67 0.00 4.76 0.00 0.00 NA NA NA NA NA 3.85 NA NA NA NA 0.00 NA NA 1.30 NA NA NA NA NA NA NA 1.75 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K jcn_only_AA CG14253,E_chr3R_22806425_22807258 chr3R + chr3R_22806425_22807258;chr3R_22806425_22807235;chr3R_22806425_22807254 chr3R_22806425_22809684 chr3R_22806325_22806424 4.75 3.01 2.88 3.92 4.49 5.49 3.25 3.76 3.14 4.17 2.50 2.61 6.77 1.71 4.20 2.77 3.80 9.92 2.42 7.21 4.28 6.06 8.33 5.00 2.33 1.22 7.69 NA 13.04 18.75 2.67 14.58 18.25 2.88 4.55 9.57 17.65 8.33 7.89 5.38 10.87 2.13 2.93 2.63 8.06 17.46 8.70 10.29 3.35 5.00 8.02 9.76 6.19 4.94 2.35 4.41 15.89 4.35 K intron_retention CG9667 chr3R - chr3R_3951888_3951950 chr3R_3951887_3951888;chr3R_3951950_3951951 chr3R_3951727_3951887;chr3R_3951951_3951964 0.00 NA 0.00 12.50 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA NA NA NA 0.00 NA NA NA NA NA 0.00 0.00 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 K intron_retention Arp87C chr3R + chr3R_8519484_8519551 chr3R_8519483_8519484;chr3R_8519551_8519552 chr3R_8518937_8519483;chr3R_8519552_8520017 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.07 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon Ntf-2,I_chrX_20906749_20909772 chrX + chrX_20907665_20909772 chrX_20907665_20908636 chrX_20909773_20914328 chrX_20908637_20909021 chrX_20907566_20907664 4.44 1.47 3.08 3.23 4.65 3.70 6.25 3.06 6.30 7.14 4.17 5.71 3.70 3.57 5.71 4.08 4.65 8.06 3.28 4.58 3.92 11.36 3.66 3.95 2.33 3.45 5.88 14.04 10.64 3.64 5.63 5.00 5.33 4.26 5.66 7.27 5.80 5.17 2.94 6.60 6.06 5.36 2.08 4.84 7.50 3.85 5.63 4.84 5.83 4.30 3.85 4.44 2.90 1.14 4.23 4.44 2.04 2.44 K jcn_only_AA CG9526,I_chr2L_6457114_6457365,I_chr2L_6457278_6457337 chr2L + chr2L_6457114_6457365 chr2L_6457114_6457337 chr2L_6457014_6457113;chr2L_6457366_6457437 100.00 100.00 100.00 99.18 100.00 100.00 100.00 100.00 100.00 97.30 100.00 98.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.86 98.90 96.92 100.00 100.00 100.00 100.00 99.06 96.92 97.53 98.68 98.40 100.00 100.00 100.00 97.53 100.00 98.65 99.12 98.77 100.00 100.00 100.00 100.00 99.03 100.00 97.48 100.00 98.25 98.91 100.00 NA 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Fmr1,I_chr3R_5934794_5935190,I_chr3R_5934794_5935245,I_chr3R_5934801_5935537 chr3R - chr3R_5934794_5935537 chr3R_5934794_5935190 chr3R_5934701_5934793;chr3R_5935538_5935637 0.65 0.88 1.72 1.06 0.00 2.11 0.00 0.59 1.31 1.32 0.00 1.63 0.00 0.00 2.05 0.00 0.00 1.56 1.05 0.86 0.00 0.70 0.52 0.71 0.00 0.69 0.00 0.00 0.00 0.85 3.51 3.12 3.26 1.16 1.15 0.98 0.54 0.85 0.00 0.00 0.00 0.47 0.00 0.71 0.00 1.28 0.00 0.00 1.38 0.00 0.63 1.09 1.82 0.00 0.66 NA 0.00 0.00 K intron_retention Rpt3 chrX + chrX_11019540_11019597 chrX_11019539_11019540;chrX_11019597_11019598 chrX_11019456_11019539;chrX_11019598_11020848 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.29 0.00 0.00 0.38 1.13 0.00 0.40 0.57 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Liprin-alpha chr2L + chr2L_6727323_6727862 chr2L_6727335_6727862 chr2L_6727863_6728780;chr2L_6727194_6727322 40.26 29.73 37.50 39.13 47.62 35.29 32.65 48.98 40.26 38.46 48.39 43.75 45.45 31.71 40.00 38.33 29.63 46.67 45.95 40.51 38.24 46.88 37.29 38.46 42.86 34.78 44.44 26.67 46.43 42.86 35.56 55.00 44.44 44.62 47.06 36.84 37.50 44.44 38.89 44.71 34.38 45.57 48.15 30.56 41.38 40.43 38.71 37.86 47.13 30.43 36.73 45.16 31.58 43.75 34.55 46.15 27.27 48.89 K intron_retention MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17389985_17394799 chr2R_17389984_17389985;chr2R_17394799_17394800 chr2R_17389891_17389984;chr2R_17394800_17394826 6.90 NA NA 0.00 NA NA 3.85 6.67 6.90 NA NA NA NA 15.38 NA 0.00 NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA 12.50 NA 7.69 NA NA NA NA NA NA NA K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2388671_2395659 chrX_2388671_2389073;chrX_2389272_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2395659 chrX_2389074_2389271;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2388641_2388670;chrX_2395660_2395759 20.00 NA NA NA NA NA NA NA 0.00 NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG10353,I_chrX_11775936_11778830,I_chrX_11778617_11778830,RI_chrX_11780885_11780988 chrX - chrX_11775936_11778830;chrX_11775936_11780988 chrX_11775936_11777220;chrX_11777655_11778830,chrX_11777655_11780988 chrX_11777221_11777654 chrX_11775836_11775935;chrX_11780989_11781085 97.83 100.00 97.92 92.54 100.00 100.00 96.72 100.00 98.33 95.83 97.44 97.71 100.00 100.00 98.15 97.83 98.00 97.67 100.00 96.58 100.00 95.83 97.18 98.41 95.06 97.67 95.29 96.97 96.51 93.98 98.11 96.43 95.86 97.75 98.55 94.12 99.40 97.58 98.05 94.12 89.87 97.76 97.44 95.60 98.06 95.74 98.59 95.35 100.00 98.61 97.98 98.25 98.82 98.36 98.00 97.50 100.00 100.00 K alternative_last_exon CG42533,F_chr2L_7476906_7476978,noncoding_1625 chr2L - chr2L_7483628_7495512 chr2L_7492227_7495512 chr2L_7483511_7483627 chr2L_7491821_7492226 chr2L_7495513_7495618 0.00 0.00 NA 6.67 NA NA 11.11 0.00 6.67 NA NA 6.25 7.69 0.00 0.00 7.14 NA NA 10.00 6.67 NA 0.00 0.00 NA NA NA NA NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 4.35 NA 0.00 NA NA NA 0.00 5.88 NA 12.50 NA NA NA 0.00 NA NA NA K jcn_only_AA CG4699 chr3R + chr3R_11624127_11624445 chr3R_11624127_11624442 chr3R_11623809_11624126;chr3R_11624446_11624758 68.35 58.62 68.18 80.49 71.43 NA NA 80.00 71.88 76.00 NA 60.61 NA NA 65.38 80.95 NA NA NA 67.92 NA 68.00 78.57 63.16 68.18 NA 64.29 62.22 57.45 60.53 70.00 80.65 68.35 78.12 69.57 59.52 73.91 72.41 83.67 NA 72.73 56.52 NA 72.22 59.57 58.62 NA 68.35 83.33 70.97 66.67 NA 61.29 NA 50.00 71.88 70.00 57.89 K intron_retention Sur-8 chr3R - chr3R_13225324_13227032 chr3R_13225323_13225324;chr3R_13227032_13227033 chr3R_13225253_13225323;chr3R_13227033_13227098 0.65 0.67 0.95 1.87 0.65 0.00 0.00 0.70 0.45 0.00 0.00 0.90 0.00 0.00 1.33 0.50 0.53 1.26 1.14 0.85 0.00 1.81 1.68 0.00 0.00 2.60 2.03 3.38 3.95 0.00 0.00 1.98 0.38 0.79 1.13 1.26 0.79 0.00 1.62 0.80 2.50 0.51 1.40 0.40 3.20 1.54 0.00 0.61 0.62 0.00 1.13 0.00 0.00 0.00 0.48 0.74 0.00 0.00 K jcn_only_AD tws,I_chr3R_5960899_5960978,CG6241 chr3R - chr3R_5959310_5960163;chr3R_5959310_5960101;chr3R_5959310_5960041;chr3R_5959310_5959789;chr3R_5959310_5960049;chr3R_5959310_5960026;chr3R_5959310_5960158;chr3R_5959310_5959679 chr3R_5959310_5960182 chr3R_5958937_5959309;chr3R_5960183_5960224 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 1.05 0.00 0.00 NA NA NA 0.00 0.00 0.00 1.82 0.00 0.00 0.00 NA 0.00 1.08 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 K intron_retention I_chr2R_5999081_6000140,E_chr2R_6001157_6001630,CG11866 chr2R + chr2R_6005374_6005536 chr2R_6005373_6005374;chr2R_6005536_6005537 chr2R_6005198_6005373;chr2R_6005537_6006047 7.11 9.09 6.25 6.78 15.00 11.11 33.33 8.00 10.42 NA 0.00 6.06 0.00 0.00 11.36 8.96 0.00 13.64 7.32 8.62 4.35 17.86 4.65 2.44 0.00 3.33 11.63 15.15 36.84 0.00 8.57 6.90 15.09 6.38 11.63 6.25 9.09 6.25 3.92 10.00 21.43 5.00 13.79 5.26 8.33 8.82 0.00 11.76 8.82 3.45 10.42 12.00 4.17 5.00 3.03 3.12 0.00 6.45 K intron_retention CG8001 chr3L + chr3L_1758655_1758715 chr3L_1758654_1758655;chr3L_1758715_1758716 chr3L_1758414_1758654;chr3L_1758716_1759208 0.00 0.00 0.00 0.00 0.00 4.55 0.00 2.38 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 NA 0.00 0.00 0.00 0.00 0.00 4.00 NA 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor I_chr3L_9707724_9708265,CG14174 chr3L + chr3L_9712522_9712613 chr3L_9712522_9712585 chr3L_9712316_9712521;chr3L_9712614_9713636 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA 92.86 NA NA NA 88.89 NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA 87.50 NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA 100.00 100.00 K intron_retention Hrb98DE,RI_chr3R_24429041_24431183,RI_chr3R_24430202_24430258 chr3R + chr3R_24429421_24429782 chr3R_24429420_24429421;chr3R_24429782_24429783 chr3R_24429330_24429420;chr3R_24429783_24429985 3.70 4.25 1.59 8.87 3.12 4.50 4.52 5.91 4.45 3.33 1.80 6.27 5.93 4.18 4.01 4.60 2.88 5.11 4.19 3.88 0.00 2.29 4.01 3.67 5.24 2.62 3.05 5.68 4.14 2.82 2.21 3.03 2.28 4.13 3.29 4.65 5.65 2.92 4.15 3.24 2.36 3.47 4.24 2.42 2.48 3.46 1.98 3.70 4.26 2.61 3.92 3.43 5.03 2.54 4.07 3.21 3.11 5.22 K intron_retention del chr2L - chr2L_21146886_21146948 chr2L_21146885_21146886;chr2L_21146948_21146949 chr2L_21145134_21146885;chr2L_21146949_21147823 33.69 26.32 30.00 56.76 28.57 33.33 40.62 35.56 36.84 NA 25.00 40.54 29.17 45.00 44.00 36.54 35.71 31.25 43.33 27.08 11.76 33.33 38.71 29.17 22.22 31.58 28.12 44.44 22.73 47.62 35.29 33.33 33.33 41.46 33.33 63.16 25.93 33.33 30.00 35.48 45.45 40.54 47.06 33.33 43.75 30.00 40.00 43.75 34.04 14.29 31.03 19.05 NA NA 39.39 41.18 31.58 46.15 K alternative_donor CG18317,RI_chr2L_1718492_1723881 chr2L - chr2L_1718492_1718674;chr2L_1718492_1718695 chr2L_1718492_1718739 chr2L_1718421_1718491;chr2L_1718740_1718903 4.17 4.76 10.26 2.63 0.00 3.03 6.82 6.52 5.88 2.38 4.17 2.82 0.00 0.00 2.94 0.00 0.00 0.00 0.00 1.96 3.57 10.45 3.23 8.51 5.88 3.70 4.76 2.82 10.34 12.07 10.53 1.69 4.76 3.70 11.11 10.00 1.27 6.98 3.90 8.40 3.92 9.46 5.00 4.11 6.25 8.06 2.27 5.59 1.56 5.13 3.92 4.76 2.94 5.88 2.70 4.65 5.56 4.17 K intron_retention v(2)k05816,CG3523 chr2L + chr2L_3055314_3055376 chr2L_3055313_3055314;chr2L_3055376_3055377 chr2L_3055262_3055313;chr2L_3055377_3055409 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA K intron_retention CrebB-17A,I_chrX_18261213_18269281,I_chrX_18265640_18266039,I_chrX_18265640_18266060,I_chrX_18265982_18266063 chrX + chrX_18265640_18266063 chrX_18265639_18265640;chrX_18266063_18266064 chrX_18265540_18265639;chrX_18266064_18266139 13.16 15.15 6.12 16.28 5.71 5.26 15.09 14.71 13.95 6.67 9.68 9.09 5.56 12.50 8.93 13.33 14.29 6.82 20.00 15.19 7.14 38.46 13.89 16.22 13.64 15.22 9.52 14.81 21.21 5.26 13.79 9.09 13.95 16.92 13.33 53.12 13.16 9.76 8.33 25.00 7.50 8.82 11.11 9.09 13.79 21.62 10.00 12.73 7.92 18.42 18.92 19.35 12.50 17.65 8.20 8.82 5.26 8.16 K intron_retention pAbp,I_chr2R_14027838_14028996 chr2R + chr2R_14032403_14032471 chr2R_14032402_14032403;chr2R_14032471_14032472 chr2R_14030918_14032402;chr2R_14032472_14032779 0.00 0.14 0.00 0.07 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.13 0.00 0.00 0.10 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 1.90 0.00 0.00 0.10 0.00 0.00 0.15 0.00 0.00 0.10 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 N cassette CG42574,I_chr3R_618802_618939,I_chr3R_621543_625413,I_chr3R_621546_625413 chr3R - chr3R_620787_625413;chr3R_621546_625413 chr3R_621546_622210,chr3R_620787_622210;chr3R_622790_625413 chr3R_622211_622789 chr3R_618940_620786;chr3R_625414_625513 52.63 60.00 43.94 77.14 45.83 46.15 39.66 51.06 54.14 52.63 40.91 73.17 22.00 54.76 57.41 53.45 53.19 52.78 47.83 77.78 40.00 67.97 54.46 62.92 62.64 31.15 53.64 61.17 44.64 52.63 46.05 42.31 42.36 50.49 46.91 64.80 60.85 54.74 57.05 52.17 34.21 52.31 51.52 40.58 64.52 51.43 54.76 40.00 54.63 52.38 49.54 44.62 58.82 54.55 50.00 56.67 58.33 51.85 K alternative_acceptor tan,R_chr3L_6048520_6048578,R_chr3L_6048608_6048676 chr3L + chr3L_6048520_6048689 chr3L_6048520_6048676 chr3L_6048508_6048519;chr3L_6048690_6048763 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 88.89 100.00 NA 100.00 NA 91.67 NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA 100.00 K alternative_donor CG8709,I_chr2R_4027128_4027182,RI_chr2R_4029534_4029599,I_chr2R_4030580_4030746,I_chr2R_4035901_4043493 chr2R - chr2R_4029534_4029603 chr2R_4029534_4029599 chr2R_4029434_4029533;chr2R_4029604_4029699 0.00 0.00 0.00 1.37 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 1.43 1.75 0.00 0.00 2.99 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 3.37 1.19 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 2.47 K intron_retention cact,RI_chr2L_16314859_16315116,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16323518_16324332 chr2L_16323517_16323518;chr2L_16324332_16324333 chr2L_16323418_16323517;chr2L_16324333_16324900 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2629579_2629913;chr3L_2629585_2629913;chr3L_2629684_2629913;chr3L_2629527_2629913;chr3L_2629597_2629913 chr3L_2629613_2629913 chr3L_2629914_2629921;chr3L_2629427_2629526 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG18094,swm,I_chr2L_19497233_19497284 chr2L + chr2L_19497090_19497159 chr2L_19497089_19497090;chr2L_19497159_19497160 chr2L_19496961_19497089;chr2L_19497160_19497232 1.04 1.35 0.00 6.74 0.00 0.00 0.00 0.00 2.40 2.27 0.00 2.44 0.00 2.50 1.61 0.00 0.00 0.00 0.00 0.00 4.65 3.87 1.53 1.00 4.11 0.00 6.25 6.86 11.36 1.04 0.00 5.33 0.83 0.00 1.59 3.53 2.40 2.17 0.00 3.68 3.37 0.00 0.00 1.03 3.48 0.00 0.00 3.15 0.00 2.27 1.77 1.49 1.05 0.00 0.00 1.02 0.00 2.60 K multi_cassette bip2,RI_chr4_481674_482028,RI_chr4_481674_487126,RI_chr4_482358_482702,RI_chr4_483128_487126,RI_chr4_483144_483680,RI_chr4_486609_487126 chr4 - chr4_481674_487126 chr4_481674_482130;chr4_482955_483013;chr4_483128_487126 chr4_482131_482954;chr4_483014_483127 chr4_481574_481673;chr4_487127_487226 100.00 94.44 100.00 97.37 92.31 100.00 100.00 100.00 98.28 100.00 100.00 94.87 100.00 100.00 95.83 94.00 96.00 91.67 97.06 94.87 100.00 100.00 100.00 94.44 100.00 100.00 94.12 100.00 88.89 100.00 87.88 100.00 88.89 98.04 100.00 100.00 100.00 100.00 100.00 91.30 88.89 100.00 95.83 100.00 100.00 100.00 93.75 100.00 100.00 100.00 95.83 90.91 88.89 100.00 100.00 100.00 87.50 100.00 K intron_retention CEI_chrX_17177009_17196871,CG5445,I_chrX_17196752_17196871,RI_chrX_17196772_17196871,I_chrX_17196820_17196875,I_chrX_17198393_17198730 chrX + chrX_17196786_17196871 chrX_17196785_17196786;chrX_17196871_17196872 chrX_17196720_17196785;chrX_17196872_17196971 90.00 92.86 92.31 100.00 NA 100.00 91.67 92.86 96.00 NA NA 95.00 NA NA 88.89 94.74 90.00 90.00 91.67 84.00 77.78 NA 86.67 71.43 77.78 87.50 83.33 92.86 76.47 91.67 85.71 NA 90.00 94.12 88.89 100.00 87.50 70.00 92.86 82.35 NA 95.24 70.00 91.67 100.00 93.33 78.57 88.89 85.71 84.62 100.00 88.89 100.00 88.89 92.31 88.89 75.00 72.73 K intron_retention Gp150,I_chr2R_18205316_18205386,I_chr2R_18213233_18213308 chr2R + chr2R_18205282_18205386 chr2R_18205281_18205282;chr2R_18205386_18205387 chr2R_18205216_18205281;chr2R_18205387_18205459 92.86 96.30 100.00 96.30 90.48 85.71 95.21 94.55 93.44 92.31 84.00 94.74 96.00 94.29 88.89 89.47 96.43 94.74 91.89 91.55 95.65 71.43 96.83 95.00 100.00 97.50 97.47 100.00 93.33 91.67 96.55 NA 100.00 88.68 88.46 96.00 90.48 87.10 90.48 87.88 100.00 88.14 90.48 90.00 NA 92.86 92.86 76.92 90.91 95.24 91.84 84.62 100.00 90.00 97.44 92.31 93.75 81.82 K jcn_only_AD kis,RI_chr2L_242745_242800,I_chr2L_242926_250756 chr2L - chr2L_242745_250756 chr2L_242745_242800 chr2L_242645_242744;chr2L_250757_250774 5.50 4.76 2.44 9.52 9.52 NA 21.43 0.00 6.25 NA NA 8.33 13.51 3.45 3.57 8.33 0.00 0.00 7.14 0.00 NA 28.00 0.00 NA NA 7.14 NA NA NA NA 3.33 NA 2.63 8.33 NA NA 12.00 NA NA 0.00 NA 6.90 4.35 NA NA NA NA 0.00 7.69 NA NA 0.00 NA NA 7.14 NA NA NA K alternative_donor prel chr2R + chr2R_5311931_5312043 chr2R_5311966_5312043 chr2R_5312044_5312420;chr2R_5311837_5311930 96.00 97.62 95.00 97.73 90.91 89.74 95.65 95.65 94.83 96.43 95.83 98.31 96.88 95.65 97.62 97.14 96.67 94.44 94.74 98.18 88.00 97.22 92.73 94.64 93.55 97.06 97.92 97.06 85.71 93.33 95.00 93.75 90.57 96.08 93.94 97.22 100.00 89.58 92.73 96.88 100.00 98.36 89.29 97.30 97.56 96.00 97.30 97.62 93.65 93.48 93.10 96.97 96.30 96.77 90.24 97.37 97.06 92.73 K alternative_acceptor CG3907,I_chr2R_19907866_19907906,I_chr2R_19909065_19909249,I_chr2R_19909692_19909755 chr2R - chr2R_19907845_19907906 chr2R_19907866_19907906 chr2R_19907907_19908006;chr2R_19907766_19907844 1.27 0.00 4.40 2.98 1.33 1.32 0.00 1.04 1.55 0.00 1.32 1.32 1.41 1.12 0.00 3.88 2.44 0.00 0.00 1.27 2.27 0.00 1.23 2.35 3.85 0.98 2.00 2.70 0.00 0.00 0.81 1.20 2.25 1.28 0.00 0.00 0.00 1.72 0.00 1.75 0.00 1.42 1.33 0.00 0.90 0.00 0.00 2.35 3.23 2.86 0.00 1.47 0.00 0.00 1.80 1.30 0.72 1.61 K intron_retention CG32174,CG33052 chr3L - chr3L_17422404_17422476 chr3L_17422403_17422404;chr3L_17422476_17422477 chr3L_17422351_17422403;chr3L_17422477_17422528 0.00 0.00 0.00 0.00 0.00 3.70 14.29 0.00 4.55 0.00 NA 4.17 NA NA 0.00 0.00 0.00 14.29 0.00 6.45 NA 0.00 0.00 0.00 0.00 6.25 3.70 NA 4.76 0.00 0.00 13.79 2.63 0.00 5.56 14.29 8.33 0.00 5.26 7.41 0.00 0.00 NA 0.00 5.26 7.69 4.08 4.00 2.94 0.00 0.00 NA 0.00 0.00 0.00 0.00 5.26 3.70 K alternative_donor slgA,I_chrX_21253735_21253820 chrX + chrX_21245849_21247146;chrX_21245487_21247146 chrX_21245768_21247146 chrX_21247147_21247693;chrX_21245405_21245486 14.84 NA NA NA NA NA NA 14.29 9.09 NA NA 15.38 NA 18.18 NA 25.00 NA NA NA 9.09 NA NA NA NA NA NA NA NA NA NA 7.69 NA NA 30.77 NA NA NA NA NA NA NA 8.33 NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA K intron_retention CG16941 chr3R - chr3R_12827296_12827356 chr3R_12827295_12827296;chr3R_12827356_12827357 chr3R_12825833_12827295;chr3R_12827357_12827528 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 4.76 0.00 0.00 0.00 0.00 10.00 5.56 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K intron_retention CG18854,RI_chr2L_9789598_9789790,I_chr2L_9789694_9789790,REI_chr2L_9789718_9789790,I_chr2L_9790307_9790615,I_chr2L_9790310_9790556 chr2L - chr2L_9789740_9789790 chr2L_9789739_9789740;chr2L_9789790_9789791 chr2L_9789733_9789739;chr2L_9789791_9789832 19.62 NA 25.00 17.95 NA NA 25.00 24.14 34.38 NA NA 19.23 NA NA 25.00 NA NA NA 6.67 0.00 NA 14.29 NA NA NA NA 57.14 NA NA NA 10.53 NA NA 15.79 NA NA NA NA NA 18.18 NA 20.00 38.46 7.14 NA NA NA 14.29 20.00 NA 50.00 50.00 NA NA 19.05 NA NA NA K intron_retention Sec16,I_chrX_12501913_12502010,I_chrX_12502899_12502973 chrX + chrX_12502899_12502967 chrX_12502898_12502899;chrX_12502967_12502968 chrX_12502799_12502898;chrX_12502968_12503669 13.87 10.53 18.75 8.22 15.62 24.14 16.95 14.29 14.10 14.58 12.00 13.79 20.45 20.00 20.37 15.79 21.43 10.53 13.56 8.24 6.98 7.55 16.28 5.56 14.29 28.57 30.00 12.82 13.95 10.14 10.26 14.75 12.64 10.39 20.00 12.20 5.00 19.05 9.76 11.11 26.32 13.48 13.33 15.09 5.48 12.39 7.41 10.42 18.18 13.33 15.38 19.05 0.00 NA 14.52 14.29 14.29 11.57 K jcn_only_AA CG14438 chrX + chrX_6653928_6654023 chrX_6653928_6654020 chrX_6653906_6653927;chrX_6654024_6654243 90.62 NA NA NA NA NA NA 91.67 85.00 NA NA 89.47 NA NA NA NA NA NA NA 96.97 NA NA NA NA NA NA NA NA NA 95.83 NA NA NA 90.62 84.62 85.00 NA NA 81.82 90.00 NA 100.00 NA NA NA NA NA 95.65 93.94 NA NA NA NA NA NA NA NA NA K intron_retention Eaf,RI_chr2R_3294566_3294636,I_chr2R_3294566_3294656,RI_chr2R_3294566_3294714,I_chr2R_3294566_3295255,I_chr2R_3294591_3295244 chr2R - chr2R_3294566_3294714 chr2R_3294565_3294566;chr2R_3294714_3294715 chr2R_3294491_3294565;chr2R_3294715_3294736 95.65 100.00 95.00 100.00 91.67 90.91 95.00 95.65 96.77 NA 92.86 92.31 88.24 100.00 100.00 96.55 92.31 94.44 94.12 97.44 93.75 100.00 94.74 94.74 100.00 86.36 90.91 100.00 95.45 92.86 100.00 93.33 100.00 93.33 100.00 100.00 100.00 81.25 95.45 95.65 100.00 100.00 80.00 88.24 100.00 94.12 NA 96.43 95.83 100.00 93.75 100.00 100.00 100.00 92.86 100.00 100.00 94.74 K jcn_only_AA CG16700,I_chrX_16989598_16989917 chrX + chrX_16989598_16990317 chrX_16989598_16989917 chrX_16989498_16989597;chrX_16990318_16990678 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention l(1)G0196,I_chrX_21900456_21904601 chrX + chrX_21898150_21898215 chrX_21898149_21898150;chrX_21898215_21898216 chrX_21897878_21898149;chrX_21898216_21898384 36.84 40.00 NA 57.14 NA NA 31.58 46.15 32.00 NA NA 29.41 NA NA 15.79 43.75 NA NA 36.84 12.50 NA 75.00 70.59 50.00 NA 60.00 68.42 NA NA NA 33.33 NA NA 40.00 NA NA 25.00 NA NA 38.46 NA 30.43 NA 35.71 NA 30.77 NA NA 34.78 NA 61.11 NA NA NA 23.08 NA NA NA K alternative_donor CG15814,I_chrX_17743744_17743940 chrX - chrX_17744102_17744321 chrX_17744102_17744245 chrX_17743941_17744101;chrX_17744322_17744390 40.00 45.45 45.95 41.30 35.90 33.33 63.16 47.37 35.42 38.89 42.50 48.21 46.15 41.18 42.50 56.82 40.00 46.43 44.74 38.38 37.50 40.74 37.70 40.00 40.54 46.15 48.39 25.00 38.10 32.43 43.48 39.39 34.21 52.27 38.46 46.88 32.26 34.00 33.33 39.58 38.89 32.50 46.88 50.00 31.82 39.13 35.90 34.48 42.35 53.12 42.50 33.33 40.00 42.31 27.08 37.50 41.03 26.09 K intron_retention cher,I_chr3R_12943024_12948119 chr3R - chr3R_12930114_12930178 chr3R_12930113_12930114;chr3R_12930178_12930179 chr3R_12929978_12930113;chr3R_12930179_12930631 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.28 0.22 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.64 0.43 0.00 0.00 0.00 1.00 1.63 3.00 0.00 0.00 0.00 0.27 0.00 0.00 0.40 0.00 0.00 0.00 0.35 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.61 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention cmet chr2L - chr2L_11262561_11262616 chr2L_11262560_11262561;chr2L_11262616_11262617 chr2L_11262506_11262560;chr2L_11262617_11262751 0.00 0.00 0.00 14.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Trn chr3L + chr3L_6186644_6187147 chr3L_6186723_6187147 chr3L_6187148_6187250;chr3L_6186603_6186643 96.00 90.00 100.00 100.00 88.89 100.00 96.00 95.65 92.50 NA 100.00 100.00 100.00 92.86 93.75 95.65 100.00 84.62 92.31 95.45 90.91 90.91 100.00 NA NA 100.00 NA NA NA 100.00 86.67 NA NA 100.00 NA NA 100.00 NA NA 100.00 NA 96.00 90.91 85.71 NA NA NA 100.00 91.30 NA NA NA NA NA 100.00 NA NA NA K jcn_only_AA Klc,I_chr3L_12741779_12743062,I_chr3L_12741783_12742943,I_chr3L_12741838_12743062 chr3L - chr3L_12741779_12743062;chr3L_12741838_12743062 chr3L_12741783_12743062 chr3L_12743063_12743083;chr3L_12741738_12741778 97.73 99.22 97.04 97.75 98.41 100.00 96.06 99.21 97.73 94.74 97.44 96.94 98.29 97.18 98.60 96.25 97.20 97.67 97.75 96.55 98.78 98.24 98.24 98.00 95.45 91.20 95.56 100.00 96.34 95.24 97.33 98.61 94.23 98.86 100.00 98.10 100.00 98.89 99.14 97.64 95.83 97.56 98.40 97.97 95.31 98.68 95.81 95.56 96.39 97.58 99.35 98.40 100.00 97.26 100.00 98.56 97.60 96.63 K intron_retention F_chr2L_15260838_15261717,cul-3 chr2L - chr2L_15271144_15271833 chr2L_15271143_15271144;chr2L_15271833_15271834 chr2L_15270905_15271143;chr2L_15271834_15271894 4.30 9.09 7.32 3.23 3.03 0.00 3.41 2.47 7.37 NA 0.00 4.60 6.52 7.32 5.88 11.84 4.65 2.63 3.45 9.09 2.56 7.41 3.92 4.17 4.00 0.00 6.12 11.76 5.26 0.00 2.56 NA 4.76 6.74 5.41 7.14 0.00 6.45 0.00 4.44 7.69 7.87 2.56 6.52 0.00 9.09 0.00 3.70 3.19 3.33 0.00 2.86 NA 0.00 7.27 8.00 9.09 0.00 K intron_retention Vrp1,I_chr2R_17997529_17997692 chr2R - chr2R_18009700_18009836 chr2R_18009699_18009700;chr2R_18009836_18009837 chr2R_18009606_18009699;chr2R_18009837_18010031 100.00 100.00 100.00 98.08 100.00 100.00 100.00 98.21 100.00 100.00 95.24 98.25 100.00 100.00 100.00 98.00 100.00 96.15 100.00 98.08 100.00 100.00 100.00 97.06 100.00 100.00 100.00 96.00 100.00 96.00 100.00 94.44 100.00 97.96 96.67 100.00 96.88 100.00 97.62 100.00 100.00 96.55 95.65 96.30 100.00 100.00 94.74 97.37 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 95.00 97.22 K alternative_donor Bet1,noncoding_13463 chr3L + chr3L_19254708_19254812 chr3L_19254756_19254812 chr3L_19254813_19255421;chr3L_19254489_19254707 19.30 16.98 8.93 20.59 18.60 20.00 26.83 30.65 16.67 15.38 21.05 18.29 21.05 21.05 22.95 19.30 17.14 22.50 21.62 21.19 22.22 15.73 12.20 17.07 23.40 16.95 20.59 14.29 18.75 28.00 19.61 16.90 28.57 19.05 23.91 14.81 17.74 15.52 18.42 18.52 31.25 18.82 21.88 12.07 20.83 24.53 23.08 25.76 17.07 13.92 18.57 17.24 14.29 22.39 20.97 20.31 10.29 23.75 K alternative_donor Sply chr2R - chr2R_12979029_12979314 chr2R_12979029_12979298 chr2R_12978864_12979028;chr2R_12979315_12979407 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 6.25 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor MB8.chr3R.pasa.66,Alh,I_chr3R_2924206_2924272,I_chr3R_2927820_2933442,RI_chr3R_2946518_2946663 chr3R - chr3R_2924206_2924276 chr3R_2924206_2924272 chr3R_2924106_2924205;chr3R_2924277_2924372 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 4.00 NA NA 0.00 NA NA 16.67 NA NA 0.00 NA 2.33 NA 4.35 0.00 5.26 NA NA 4.35 7.14 NA NA NA NA 0.00 5.00 NA NA 2.33 0.00 0.00 0.00 NA 2.94 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 4.55 0.00 K alternative_donor CG33298 chr2L + chr2L_9519480_9519719 chr2L_9519535_9519719 chr2L_9519720_9520654;chr2L_9519394_9519479 1.43 0.00 5.00 0.00 0.00 0.00 3.57 0.00 2.02 0.00 2.70 3.28 2.00 3.77 0.00 1.54 0.00 0.00 0.00 1.43 2.38 3.66 5.00 0.00 0.00 5.26 0.00 0.00 8.33 0.00 3.23 4.55 3.12 2.27 0.00 4.76 2.56 0.00 0.00 3.28 0.00 4.17 0.00 0.00 0.00 5.88 3.23 0.00 3.03 5.56 2.94 0.00 0.00 0.00 0.00 2.94 0.00 2.70 K cassette Rala,noncoding_21767 chrX - chrX_3604282_3613395 chrX_3604282_3610504;chrX_3610701_3613395 chrX_3610505_3610700 chrX_3604102_3604281;chrX_3613396_3613464 17.24 20.00 25.53 15.38 14.08 21.15 7.59 25.69 21.05 10.45 31.43 13.40 16.33 24.00 18.75 20.00 31.91 14.29 23.64 22.43 30.77 22.22 16.67 19.28 11.63 17.24 7.14 3.85 13.51 13.21 18.00 17.07 8.96 25.00 23.81 5.88 23.68 14.55 17.14 15.56 8.11 21.32 26.67 13.33 10.91 18.64 17.31 14.29 20.49 23.26 17.81 14.29 13.04 18.52 24.64 16.00 11.84 14.29 K intron_retention tra2,psnoRNA:tra2-a,REFI_chr2R_10491644_10491701 chr2R - chr2R_10490382_10490665 chr2R_10490381_10490382;chr2R_10490665_10490666 chr2R_10490009_10490381;chr2R_10490666_10490794 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 4.35 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 7.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 4.35 0.00 0.00 8.70 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA eIF-1A chr3R + chr3R_14100479_14100588;chr3R_14100479_14100566 chr3R_14100479_14100547 chr3R_14100417_14100478;chr3R_14100589_14100702 1.33 1.33 0.73 1.16 1.13 1.42 1.47 1.62 0.90 3.10 1.38 1.51 3.03 0.51 1.57 0.65 1.04 1.23 1.06 0.55 0.90 0.84 0.99 2.01 1.22 4.24 1.05 1.62 4.38 3.70 1.01 0.00 0.60 1.45 1.24 0.35 1.72 1.82 1.39 3.07 4.08 1.62 1.96 4.55 1.28 1.85 1.01 5.00 1.15 2.13 1.46 1.21 0.49 0.96 0.61 1.60 0.58 3.73 K intron_retention CG34133,F_chr3R_25696884_25696960 chr3R + chr3R_25700056_25700132 chr3R_25700055_25700056;chr3R_25700132_25700133 chr3R_25699927_25700055;chr3R_25700133_25700289 0.00 2.86 1.28 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 2.20 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention pyd,I_chr3R_4654041_4664113,I_chr3R_4749124_4756437 chr3R - chr3R_4654041_4654556 chr3R_4654040_4654041;chr3R_4654556_4654557 chr3R_4653941_4654040;chr3R_4654557_4655281 7.89 6.12 NA 21.62 17.65 0.00 24.14 19.44 10.23 5.56 NA 16.67 NA 33.33 8.70 24.00 11.11 10.00 31.25 11.29 25.00 1.04 6.87 7.89 8.06 NA 8.93 4.12 1.72 4.76 19.05 11.76 4.00 13.95 7.41 3.28 5.98 2.56 6.00 13.79 4.92 10.61 5.88 5.19 2.75 4.29 2.63 9.26 17.78 5.75 5.88 8.11 4.76 0.00 25.93 2.75 3.17 8.89 K intron_retention CG32032 chr3L + chr3L_9086412_9086719 chr3L_9086411_9086412;chr3L_9086719_9086720 chr3L_9086163_9086411;chr3L_9086720_9086830 0.36 0.00 0.52 0.72 1.04 0.00 0.00 0.36 0.41 1.27 0.00 0.74 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.27 0.00 1.11 0.68 0.65 1.68 0.00 0.36 0.00 0.00 0.00 2.89 0.57 0.00 1.09 1.64 3.95 0.33 0.40 0.64 0.57 2.11 0.82 0.00 0.41 0.00 0.32 1.29 0.66 0.52 0.00 0.68 0.00 0.00 0.47 0.00 0.86 0.00 0.00 K intron_retention CG31650,I_chr2L_5041540_5041687,RI_chr2L_5041540_5041697,RI_chr2L_5041540_5042490,I_chr2L_5042888_5042983,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5041540_5042490 chr2L_5041539_5041540;chr2L_5042490_5042491 chr2L_5041440_5041539;chr2L_5042491_5042590 10.53 NA NA 10.53 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21309092_21309945;chr2L_21309092_21309994;chr2L_21309092_21309579;chr2L_21309092_21309938 chr2L_21309092_21310000 chr2L_21308992_21309091;chr2L_21310001_21310009 2.38 NA 0.00 3.85 6.25 NA 7.69 0.00 2.04 5.56 4.35 2.56 0.00 5.56 0.00 4.35 NA NA 0.00 1.72 0.00 4.35 0.00 0.00 NA 5.56 0.00 6.67 3.12 NA 4.76 9.09 0.00 3.85 7.14 0.00 NA 0.00 0.00 2.38 NA 0.00 NA 0.00 0.00 5.88 NA 2.56 2.38 NA NA 0.00 NA NA 4.17 NA NA NA K intron_retention CG5515,I_chr3R_20017846_20017911,I_chr3R_20018643_20018703 chr3R - chr3R_20014480_20014554 chr3R_20014479_20014480;chr3R_20014554_20014555 chr3R_20014392_20014479;chr3R_20014555_20014564 30.09 NA NA 41.18 NA NA 30.77 40.00 28.57 NA 25.00 41.18 NA NA 36.36 36.36 NA NA 35.29 21.74 NA NA NA NA NA NA NA NA NA NA 33.33 NA NA 29.41 NA NA NA NA NA NA NA 22.73 NA NA NA NA NA NA 23.08 NA NA NA NA NA 17.65 NA NA 5.26 K intron_retention CG3402 chr3L - chr3L_652277_652443 chr3L_652276_652277;chr3L_652443_652444 chr3L_651523_652276;chr3L_652444_652572 1.54 0.00 3.42 6.36 0.00 1.46 4.73 4.95 2.18 2.00 1.54 2.20 6.45 2.48 2.48 2.86 1.85 2.48 3.31 1.84 0.00 2.33 0.91 0.95 2.40 3.60 1.15 2.70 1.32 0.68 2.72 0.00 0.45 2.34 0.56 2.14 0.00 0.48 0.45 0.45 0.68 1.79 3.45 1.01 0.24 0.71 2.33 0.52 3.20 0.00 0.51 0.78 0.00 1.88 1.47 0.00 2.27 0.00 K intron_retention RI_chr3L_5801924_5803389,mad2 chr3L - chr3L_5805754_5805814 chr3L_5805753_5805754;chr3L_5805814_5805815 chr3L_5805548_5805753;chr3L_5805815_5805961 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 1.20 0.00 0.00 1.25 0.00 0.00 0.00 1.68 0.00 0.00 0.00 0.86 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 1.72 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG13760 chrX - chrX_2478582_2478699 chrX_2478636_2478699 chrX_2478700_2478968;chrX_2478496_2478581 12.24 24.44 10.53 11.94 17.14 11.11 13.21 19.30 13.82 12.20 14.29 12.50 13.64 14.71 4.41 13.51 9.68 16.67 14.29 10.17 5.26 11.67 12.20 8.97 5.88 18.18 8.33 10.34 4.35 4.76 14.89 25.00 20.27 10.77 13.95 12.28 6.19 22.58 3.23 17.46 17.65 11.36 2.94 17.07 16.42 11.25 9.43 20.41 3.70 14.81 8.33 12.00 NA 10.77 16.67 7.55 15.69 18.18 K intron_retention eIF-4E,RI_chr3L_9394054_9394756,I_chr3L_9394308_9394756,RI_chr3L_9394468_9394631,I_chr3L_9394468_9394659,I_chr3L_9394468_9395155,I_chr3L_9394468_9395240,I_chr3L_9394468_9395446,I_chr3L_9394685_9394756,RI_chr3L_9394707_9395016,RI_chr3L_9394707_9395198,I_chr3L_9394707_9395309,I_chr3L_9394819_9394884,I_chr3L_9394819_9395016,I_chr3L_9394819_9395198,I_chr3L_9394819_9395379 chr3L - chr3L_9394468_9395379 chr3L_9394467_9394468;chr3L_9395379_9395380 chr3L_9394368_9394467;chr3L_9395380_9395409 29.66 26.98 42.86 48.65 48.15 30.56 42.72 27.27 40.14 37.50 25.58 41.59 16.25 27.27 28.07 29.51 35.29 30.95 26.03 33.04 22.92 61.11 33.33 30.00 20.00 28.26 45.00 39.02 37.50 42.55 25.42 21.74 37.84 28.97 26.39 22.86 46.30 30.77 33.33 32.56 18.37 29.66 22.64 42.31 20.00 23.08 22.99 22.03 27.74 33.33 32.91 37.74 23.88 21.69 23.19 26.09 30.85 21.30 K intron_retention CG11125 chr2R + chr2R_3336447_3336498 chr2R_3336446_3336447;chr2R_3336498_3336499 chr2R_3336292_3336446;chr2R_3336499_3336920 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.77 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention stj chr2R + chr2R_9704207_9704259 chr2R_9704206_9704207;chr2R_9704259_9704260 chr2R_9704067_9704206;chr2R_9704260_9704484 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.32 3.92 1.52 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 K intron_retention aPKC,I_chr2R_10833552_10833654,RI_chr2R_10849347_10850391 chr2R - chr2R_10833552_10833654 chr2R_10833551_10833552;chr2R_10833654_10833655 chr2R_10833496_10833551;chr2R_10833655_10833754 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 96.97 NA NA 96.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 95.00 100.00 90.91 100.00 92.86 100.00 100.00 90.91 NA NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 88.89 100.00 90.00 95.45 90.91 90.00 90.00 100.00 NA 90.91 100.00 100.00 92.31 100.00 NA NA 100.00 100.00 100.00 100.00 K intron_retention RpL15 chr3LHet + chr3LHet_2398060_2398127 chr3LHet_2398059_2398060;chr3LHet_2398127_2398128 chr3LHet_2398050_2398059;chr3LHet_2398128_2398454 98.45 97.46 96.38 98.17 97.44 96.72 98.29 97.56 99.24 97.78 97.66 99.10 98.45 98.98 95.43 98.68 98.36 94.87 96.45 97.00 96.61 99.52 98.92 98.98 99.13 98.64 98.91 98.86 100.00 98.96 98.85 98.99 99.38 95.95 98.28 100.00 99.23 100.00 100.00 97.83 97.75 97.40 96.10 100.00 96.58 99.10 100.00 98.20 96.39 99.23 100.00 100.00 95.12 97.50 97.65 100.00 99.46 93.33 N jcn_only_AD rdgA chrX + chrX_8916273_8918293 chrX_8918171_8918293 chrX_8918294_8918451 38.46 NA NA NA NA NA NA NA 34.62 NA NA NA NA NA NA NA NA NA NA 38.46 NA 57.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N multi_cassette PMCA,RI_chr4_370306_371228,I_chr4_371836_372509,I_chr4_373671_374568,I_chr4_376108_379519 chr4 - chr4_371317_372509 chr4_371317_371390;chr4_371836_372211;chr4_372454_372509 chr4_371391_371835;chr4_372212_372453 chr4_371229_371316;chr4_372510_372609 100.00 100.00 100.00 86.23 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG13795,F_chr2L_7724518_7724568 chr2L - chr2L_7725250_7725309 chr2L_7725249_7725250;chr2L_7725309_7725310 chr2L_7725161_7725249;chr2L_7725310_7725473 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA NA NA 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 10.53 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA N alternative_last_exon mmd chrX - chrX_15852624_15856018;chrX_15848478_15856018 chrX_15854946_15856018 chrX_15852351_15852623;chrX_15848319_15848477 chrX_15854840_15854945 chrX_15856019_15856024 45.45 33.33 44.44 58.82 25.00 25.00 38.46 60.00 48.00 NA NA 30.77 28.57 41.67 26.67 53.33 45.45 72.73 46.67 50.00 57.14 NA NA NA NA 37.50 NA NA NA NA 22.22 NA NA 61.54 NA NA NA NA NA NA NA 50.00 50.00 NA NA NA NA NA 25.00 NA NA NA NA NA 46.15 NA NA NA K intron_retention RE_chr2R_18741940_18741998,RpL23 chr2R + chr2R_18742053_18742169 chr2R_18742052_18742053;chr2R_18742169_18742170 chr2R_18742003_18742052;chr2R_18742170_18742279 0.11 0.04 0.04 0.05 0.11 0.02 0.22 0.10 0.08 0.07 0.22 0.05 0.14 0.14 0.12 0.12 0.14 0.08 0.07 0.03 0.07 0.13 0.10 0.10 0.20 0.73 0.20 0.20 0.36 0.11 0.56 0.12 0.26 0.05 0.20 0.47 0.06 0.08 0.05 0.14 1.02 0.09 0.14 0.13 0.10 0.24 0.09 0.47 0.19 0.15 0.15 0.08 0.08 0.11 0.09 0.11 0.05 0.32 K alternative_acceptor l(2)NC136,I_chr2R_1545723_1546024 chr2R - chr2R_1549867_1549960 chr2R_1549882_1549960 chr2R_1549961_1550058;chr2R_1549732_1549866 100.00 100.00 100.00 100.00 100.00 92.59 100.00 98.70 98.78 90.91 96.55 98.08 100.00 100.00 97.30 98.84 100.00 100.00 98.11 100.00 100.00 100.00 100.00 94.74 100.00 100.00 96.30 94.12 100.00 100.00 100.00 100.00 100.00 98.81 100.00 100.00 94.74 100.00 100.00 98.36 94.44 98.53 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 94.12 88.89 100.00 98.00 100.00 100.00 96.67 K intron_retention gus,I_chr2R_1009158_1009345,RI_chr2R_1009158_1011540,I_chr2R_1009346_1015730 chr2R - chr2R_1009158_1009241 chr2R_1009157_1009158;chr2R_1009241_1009242 chr2R_1009058_1009157;chr2R_1009242_1009273 8.88 NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.26 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG6479 chr3L - chr3L_17331819_17331895 chr3L_17331837_17331895 chr3L_17331896_17332200;chr3L_17331559_17331818 100.00 90.91 100.00 96.30 94.44 100.00 100.00 88.89 96.55 100.00 94.12 96.97 100.00 100.00 100.00 100.00 93.33 100.00 91.67 97.06 88.89 90.62 100.00 89.66 100.00 100.00 96.67 100.00 100.00 95.45 100.00 100.00 92.31 100.00 100.00 100.00 93.33 90.00 97.37 98.04 100.00 97.14 100.00 96.30 100.00 100.00 94.12 100.00 100.00 100.00 92.86 90.91 100.00 93.75 94.74 92.31 100.00 100.00 K intron_retention CG9915 chrX - chrX_16205252_16205310 chrX_16205251_16205252;chrX_16205310_16205311 chrX_16204888_16205251;chrX_16205311_16205464 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 K jcn_only_AA vap,I_chrX_15897976_15899654,I_chrX_15898011_15899654,RI_chrX_15898427_15899654,I_chrX_15899237_15899654 chrX - chrX_15897976_15899654;chrX_15898427_15899654;chrX_15898011_15899654;chrX_15898478_15899654 chrX_15899510_15899654 chrX_15899655_15899705 73.06 NA NA NA NA NA 64.71 NA 72.22 NA NA 30.30 NA NA NA 50.00 NA NA NA 82.98 NA 82.35 66.67 NA 77.27 NA NA NA NA 75.00 55.17 NA NA 53.57 NA NA 85.00 NA 77.27 74.19 NA 51.35 NA 73.91 NA NA NA NA 40.00 NA NA 76.92 NA NA NA NA NA NA K jcn_only_AA msn,I_chr3L_2558033_2560115,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2558393_2560115;chr3L_2558390_2560115 chr3L_2558036_2560115 chr3L_2560116_2560215;chr3L_2557936_2558035 27.84 30.73 29.28 20.98 28.88 30.80 50.76 27.84 24.10 33.46 31.10 25.03 14.18 24.45 29.13 19.67 20.55 21.77 17.70 25.70 25.24 18.04 33.75 38.25 30.02 25.79 40.29 46.26 13.80 23.54 21.80 22.73 21.34 27.77 29.11 31.45 23.41 43.90 29.47 22.47 31.46 28.11 27.12 22.69 26.99 29.67 38.46 16.85 24.41 41.82 38.98 35.20 32.59 38.34 26.62 30.29 45.49 21.69 K intron_retention CG9669,RI_chr3L_16837963_16838041,RI_chr3L_16837988_16838041 chr3L - chr3L_16837963_16838019 chr3L_16837962_16837963;chr3L_16838019_16838020 chr3L_16837888_16837962;chr3L_16838020_16838062 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 8.33 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.13 0.00 3.08 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5385,CG5384 chr2L - chr2L_10311785_10311898 chr2L_10311784_10311785;chr2L_10311898_10311899 chr2L_10310996_10311784;chr2L_10311899_10312146 0.00 0.00 0.00 0.00 0.00 0.00 1.72 3.61 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 2.02 0.00 0.00 0.00 2.08 0.00 2.27 0.00 0.00 0.00 0.00 1.39 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 2.27 2.82 0.00 0.00 0.00 K jcn_only_AA hppy,I_chr2R_15066378_15066915,I_chr2R_15105700_15106080,I_chr2R_15106144_15108248 chr2R + chr2R_15066378_15066881;chr2R_15066378_15067003 chr2R_15066378_15066915 chr2R_15066360_15066377;chr2R_15067004_15067015 2.38 3.85 NA NA NA NA 4.17 4.55 2.38 NA NA 0.00 NA NA NA 9.09 NA NA 4.35 0.00 NA 7.02 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.85 NA NA NA 0.00 NA 0.00 0.00 4.35 NA 3.77 NA 0.00 NA 1.32 NA NA 9.09 2.86 2.50 NA 2.27 3.85 NA NA 4.35 NA NA NA K intron_retention chic,RI_chr2L_5976783_5980950,I_chr2L_5979705_5980558,I_chr2L_5979705_5980632,I_chr2L_5979705_5980639,RI_chr2L_5979705_5980734 chr2L - chr2L_5980499_5980558 chr2L_5980498_5980499;chr2L_5980558_5980559 chr2L_5980443_5980498;chr2L_5980559_5980584 50.00 NA NA 56.25 NA NA 57.14 61.54 58.82 NA NA 40.91 NA NA NA 50.00 NA 50.00 87.50 33.33 NA 53.85 41.67 45.45 56.25 47.06 72.73 73.33 60.87 NA NA 41.67 59.26 53.33 39.13 73.68 46.67 60.00 NA 34.62 44.00 84.62 NA NA 44.83 33.33 NA 26.47 42.86 61.54 53.33 NA 37.50 NA NA NA 45.45 31.25 K intron_retention CG13085,REI_chr2L_19426699_19427208,I_chr2L_19426780_19427208,CG16771,I_chr2L_19426895_19427208,I_chr2L_19427121_19427208 chr2L + chr2L_19426808_19427208 chr2L_19426807_19426808;chr2L_19427208_19427209 chr2L_19426795_19426807;chr2L_19427209_19427308 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 90.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 91.67 NA NA NA 100.00 90.00 NA 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA K intron_retention MBD-R2 chr3R - chr3R_8179667_8179719 chr3R_8179666_8179667;chr3R_8179719_8179720 chr3R_8178336_8179666;chr3R_8179720_8179852 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor cnc,I_chr3R_19014852_19016555,I_chr3R_19014852_19016634,I_chr3R_19014852_19016738,I_chr3R_19046366_19046507,I_chr3R_19046619_19047567 chr3R - chr3R_19014852_19016744 chr3R_19014852_19016561 chr3R_19014752_19014851;chr3R_19016745_19016838 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA 92.31 100.00 NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA 100.00 K intron_retention CG7609,ATPsyn-gamma,I_chr3R_25574492_25574541 chr3R - chr3R_25574471_25574545 chr3R_25574470_25574471;chr3R_25574545_25574546 chr3R_25574392_25574470;chr3R_25574546_25574564 94.78 95.97 93.35 90.56 91.24 91.60 91.73 91.98 93.96 94.78 91.81 94.12 91.96 93.69 89.95 95.00 90.73 94.62 91.04 93.27 92.73 98.07 98.30 94.57 93.66 91.18 98.35 97.83 98.30 99.17 92.61 96.49 96.56 92.44 99.42 97.67 97.47 96.63 95.14 97.78 97.68 91.83 94.29 98.11 93.75 99.03 96.51 98.06 94.18 96.10 97.21 93.24 94.88 99.51 93.47 98.02 95.51 97.63 K jcn_only_AD Rheb,I_chr3R_1395050_1395121,CRMP chr3R + chr3R_1394994_1395121 chr3R_1395050_1395121 chr3R_1395122_1395193;chr3R_1394950_1394993 0.41 0.65 0.00 0.40 0.00 0.70 0.48 0.00 0.27 0.00 1.39 1.29 0.00 0.70 0.65 0.46 0.00 0.00 0.00 0.28 0.00 0.74 0.00 1.12 0.00 0.82 1.32 0.00 1.87 0.83 1.24 0.99 0.51 0.47 0.00 0.00 0.00 0.64 0.00 0.00 0.74 0.37 0.00 0.95 0.41 0.55 0.50 0.65 0.38 0.65 0.00 0.91 0.00 0.00 1.65 0.00 0.00 1.45 K intron_retention CG2182 chr3R - chr3R_1482294_1482520 chr3R_1482293_1482294;chr3R_1482520_1482521 chr3R_1481952_1482293;chr3R_1482521_1483654 0.00 0.00 0.00 1.56 0.00 0.00 1.37 2.26 0.96 0.00 0.00 1.26 2.60 0.00 1.96 0.00 0.00 0.00 1.01 1.20 0.00 0.00 0.00 1.03 1.67 0.00 1.09 0.57 0.00 0.00 0.00 0.00 0.00 1.60 1.22 1.80 0.36 0.50 0.43 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 1.76 0.49 0.48 0.79 0.00 0.00 3.03 0.46 0.00 0.00 K jcn_only_AA cic,RI_chr3R_16122222_16123529 chr3R + chr3R_16122222_16122818;chr3R_16122222_16124105 chr3R_16122222_16123529 chr3R_16122122_16122221;chr3R_16124106_16124254 0.00 0.00 0.00 0.00 0.00 0.88 1.97 0.00 0.00 0.00 0.00 0.35 0.00 0.97 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.89 0.00 0.59 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.65 0.38 0.00 0.00 0.49 0.00 0.00 0.00 1.43 2.22 0.87 0.00 0.54 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32230,RI_chr3L_23332465_23332529,RI_chr3L_23332577_23334556,RI_chr3L_23332781_23338942 chr3L + chr3L_23332465_23332529 chr3L_23332464_23332465;chr3L_23332529_23332530 chr3L_23332425_23332464;chr3L_23332530_23332576 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 98.97 100.00 100.00 100.00 NA 100.00 93.75 97.56 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 NA NA NA 100.00 NA NA 100.00 NA NA 100.00 NA NA 100.00 NA 97.50 95.24 100.00 NA NA 100.00 NA 100.00 95.83 NA 100.00 NA NA 90.91 100.00 97.62 NA K intron_retention prominin-like,I_chr3L_3121200_3123087 chr3L - chr3L_3117257_3117345 chr3L_3117256_3117257;chr3L_3117345_3117346 chr3L_3117083_3117256;chr3L_3117346_3117402 0.70 0.79 0.66 2.76 0.28 0.62 3.42 1.53 0.91 0.00 0.38 0.79 0.34 1.01 0.54 0.69 0.56 0.66 0.61 1.05 0.67 1.44 1.13 0.79 0.42 2.02 1.51 6.62 0.94 0.83 1.29 0.00 0.72 0.66 0.00 0.45 0.70 0.35 0.92 1.07 1.01 0.70 0.00 1.32 0.65 1.32 0.30 1.84 0.35 0.00 0.50 0.00 1.88 0.00 0.94 0.42 1.17 2.27 K jcn_only_AA Sucb chr3L - chr3L_5555968_5556184 chr3L_5555972_5556184 chr3L_5556185_5556284;chr3L_5555387_5555967 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.24 100.00 100.00 99.05 97.96 100.00 98.75 98.72 100.00 100.00 100.00 98.51 98.21 98.04 100.00 100.00 100.00 100.00 100.00 100.00 98.67 98.36 96.83 100.00 100.00 98.82 96.15 98.46 100.00 96.15 98.77 99.41 98.88 99.21 100.00 98.81 100.00 100.00 100.00 98.92 99.12 100.00 100.00 100.00 98.00 100.00 100.00 100.00 97.87 95.38 K intron_retention Nedd4,I_chr3L_17532828_17532882,I_chr3L_17532828_17533787,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17532828_17533790 chr3L_17532827_17532828;chr3L_17533790_17533791 chr3L_17532728_17532827;chr3L_17533791_17533887 35.71 45.45 42.86 74.07 29.41 19.23 25.45 27.27 32.65 20.00 77.78 33.33 30.77 36.84 19.35 38.10 14.29 38.89 22.22 31.71 66.67 71.43 39.47 46.15 50.00 15.38 35.48 35.71 31.25 45.45 31.82 35.29 37.04 22.58 29.17 24.00 44.44 31.25 44.44 27.08 NA 37.14 NA 44.44 50.00 43.75 41.18 51.72 18.18 40.00 29.63 26.67 7.69 46.15 31.82 35.71 61.54 50.00 K intron_retention pcm chrX - chrX_19381101_19381164 chrX_19381100_19381101;chrX_19381164_19381165 chrX_19380438_19381100;chrX_19381165_19381745 0.00 6.25 0.00 NA NA NA NA NA 5.56 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 14.29 0.00 0.00 NA NA 0.00 NA 14.29 NA NA 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA 3.45 0.00 5.56 0.00 0.00 0.00 0.00 0.00 NA 7.41 NA 0.00 0.00 16.67 K intron_retention caz,noncoding_24110,RI_chrX_16183147_16183258,RI_chrX_16183356_16185973 chrX + chrX_16183192_16183258 chrX_16183191_16183192;chrX_16183258_16183259 chrX_16183060_16183191;chrX_16183259_16183355 0.51 0.88 2.26 0.00 0.00 0.00 1.72 0.00 0.62 0.61 0.00 1.13 0.00 0.00 1.32 0.00 0.00 0.00 0.00 1.62 0.00 0.00 0.56 1.65 2.06 1.11 3.35 2.96 1.75 0.00 0.00 0.00 0.88 0.00 0.60 3.23 0.32 0.33 0.70 1.50 2.33 1.18 0.00 0.00 0.00 1.54 0.00 1.41 0.94 0.00 1.38 0.00 0.51 0.00 0.61 0.45 0.36 1.14 K intron_retention CG7843,I_chr2R_1972736_1972822 chr2R - chr2R_1972537_1972590 chr2R_1972536_1972537;chr2R_1972590_1972591 chr2R_1972352_1972536;chr2R_1972591_1972735 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.64 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG34394,I_chr2L_3365674_3365965 chr2L - chr2L_3367720_3367903 chr2L_3367720_3367850 chr2L_3367245_3367719;chr2L_3367904_3368056 2.33 3.03 2.90 3.92 2.70 2.70 5.00 4.92 1.18 2.33 0.00 3.66 0.00 5.71 0.00 1.89 0.00 0.00 2.50 2.44 0.00 2.78 0.00 0.00 3.03 0.00 2.56 5.77 16.28 4.00 3.39 4.76 1.67 0.00 2.70 0.00 3.57 0.00 0.00 1.54 0.00 2.00 0.00 1.82 3.85 0.00 2.94 1.85 2.47 0.00 2.38 0.00 0.00 0.00 4.44 2.63 0.00 2.50 K alternative_donor CG17508,RI_chr2R_1496995_1497120 chr2R + chr2R_1496288_1496517;chr2R_1496337_1496517;chr2R_1496303_1496517 chr2R_1496341_1496517 chr2R_1496518_1496994;chr2R_1496153_1496287 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention stj chr2R + chr2R_9701521_9701581 chr2R_9701520_9701521;chr2R_9701581_9701582 chr2R_9701446_9701520;chr2R_9701582_9701689 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 5.56 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Treh,I_chr2R_16972565_16972702,I_chr2R_16974505_16974557,I_chr2R_16975359_16975442,RI_chr2R_16975359_16975842,I_chr2R_16975364_16975842 chr2R + chr2R_16974443_16975285 chr2R_16974442_16974443;chr2R_16975285_16975286 chr2R_16974405_16974442;chr2R_16975286_16975358 50.00 38.10 39.13 51.22 58.33 43.48 61.54 66.67 50.00 77.78 NA 56.10 NA 64.29 65.00 59.09 55.56 35.71 28.57 45.45 36.36 56.76 48.48 45.45 46.15 60.00 48.00 81.82 68.00 36.36 55.56 51.43 58.97 50.00 52.63 54.17 35.00 41.38 35.29 48.89 48.84 48.78 54.55 46.88 52.83 44.64 34.62 62.30 51.28 80.00 42.11 53.33 50.00 39.29 44.00 24.32 36.11 40.79 K intron_retention RI_chr3L_707623_707678,CkIIalpha-i3,CG13896,RI_chr3L_711692_711744 chr3L - chr3L_711688_711746 chr3L_711687_711688;chr3L_711746_711747 chr3L_711592_711687;chr3L_711747_711763 97.22 NA NA NA NA NA 90.91 NA 94.44 NA NA NA 92.86 NA NA 100.00 NA 100.00 92.86 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 90.91 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA Sdc,I_chr2R_17286819_17367595,I_chr2R_17324594_17367595 chr2R - chr2R_17367884_17368518;chr2R_17368045_17368518 chr2R_17367862_17368518 chr2R_17368519_17368632;chr2R_17367596_17367861 88.14 NA NA 84.44 NA 100.00 85.71 88.68 87.10 NA NA 80.65 100.00 90.32 NA 89.06 NA NA 87.50 82.86 NA NA NA NA NA 72.41 NA NA 86.36 NA 91.49 NA NA 88.14 NA NA NA NA NA NA 85.71 95.12 85.71 NA NA 95.24 NA 96.77 81.94 NA NA NA NA NA 92.00 NA NA 92.00 K alternative_donor Fs(2)Ket,I_chr2L_20734991_20735252,I_chr2L_20735091_20735305,I_chr2L_20735170_20735252,I_chr2L_20738976_20749527 chr2L + chr2L_20735091_20735252;chr2L_20734991_20735252 chr2L_20735170_20735252 chr2L_20735253_20735352;chr2L_20734943_20734990 0.00 0.00 0.00 5.00 0.00 0.00 3.70 2.99 3.70 0.00 0.00 6.06 6.90 2.94 2.86 3.85 0.00 0.00 5.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 NA 0.00 1.64 0.00 0.00 6.25 0.00 0.00 4.17 NA 2.04 0.00 0.00 NA 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.38 K intron_retention Jupiter,I_chr3R_7417030_7419354,I_chr3R_7417630_7417716,I_chr3R_7418347_7445425,RI_chr3R_7442793_7445425 chr3R - chr3R_7417030_7419354 chr3R_7417029_7417030;chr3R_7419354_7419355 chr3R_7416930_7417029;chr3R_7419355_7419454 47.37 63.64 NA 5.70 NA NA 43.75 NA 52.63 NA NA 75.00 NA 50.00 NA NA NA NA NA 53.33 NA 6.90 41.67 60.00 NA NA NA NA 15.38 NA NA NA 16.67 NA NA NA NA 33.33 NA 54.55 25.00 50.00 NA NA NA 36.36 NA 47.37 43.75 NA 75.00 NA NA NA 66.67 NA NA NA K intron_retention CG42507,Trl,EI_chr3L_14750431_14750893,I_chr3L_14750431_14750985,CI_chr3L_14750431_14753667,I_chr3L_14754175_14754238 chr3L - chr3L_14750431_14750941 chr3L_14750430_14750431;chr3L_14750941_14750942 chr3L_14750331_14750430;chr3L_14750942_14750954 8.89 8.70 13.64 0.00 0.00 NA 10.53 14.81 9.52 10.53 6.67 8.33 10.53 5.88 0.00 8.33 13.33 0.00 15.00 7.84 0.00 7.69 7.89 5.00 11.54 6.25 3.23 38.46 24.24 7.41 4.17 17.65 12.07 16.67 6.45 12.90 6.90 8.70 0.00 13.11 11.54 9.52 7.69 16.67 9.09 15.38 14.29 17.19 12.50 9.38 8.33 12.90 7.14 6.25 18.52 7.14 0.00 12.77 K intron_retention dre4,I_chr3L_1875590_1875651,F_chr3L_1877432_1877517 chr3L - chr3L_1875587_1875651 chr3L_1875586_1875587;chr3L_1875651_1875652 chr3L_1875490_1875586;chr3L_1875652_1875751 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 2.79 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11163,I_chr2R_1666219_1669711 chr2R - chr2R_1663362_1663826 chr2R_1663361_1663362;chr2R_1663826_1663827 chr2R_1663235_1663361;chr2R_1663827_1664096 0.00 0.00 0.00 5.13 0.00 0.00 0.00 3.85 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1968 chr2R + chr2R_5175133_5175187 chr2R_5175132_5175133;chr2R_5175187_5175188 chr2R_5174501_5175132;chr2R_5175188_5175408 0.00 0.00 0.00 10.53 3.57 0.00 0.00 6.06 3.51 NA 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.77 0.00 0.00 4.00 0.00 NA 0.00 12.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_261460_263795;chr4_261460_263891 chr4_261460_263086;chr4_263306_263891,chr4_263306_263795 chr4_263087_263305 chr4_261360_261459;chr4_263892_263991 97.56 94.44 94.74 100.00 91.67 94.74 100.00 96.15 98.08 NA 90.00 93.94 63.64 100.00 95.65 97.56 94.12 95.24 93.10 97.30 92.31 100.00 92.31 94.12 100.00 84.62 93.75 NA 83.33 100.00 96.15 100.00 100.00 97.83 90.91 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 88.89 96.88 90.91 100.00 100.00 K intron_retention RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,alpha4GT1,RI_chr2L_3022346_3022422,CG3605,CG17258 chr2L - chr2L_3022369_3022422 chr2L_3022368_3022369;chr2L_3022422_3022423 chr2L_3021309_3022368;chr2L_3022423_3022522 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Vha100-2 chr3R - chr3R_14219132_14222507 chr3R_14219132_14222434 chr3R_14218994_14219131;chr3R_14222508_14222727 36.36 NA NA 53.95 40.91 40.00 31.48 47.22 30.00 NA 56.52 34.62 20.00 34.38 43.75 30.23 44.12 46.43 41.46 37.04 46.67 35.71 39.47 50.00 NA 33.33 41.38 NA NA NA 18.52 NA 55.17 32.61 NA 32.00 NA NA 34.62 30.43 NA 45.59 25.93 NA NA NA NA NA 26.67 NA 18.18 NA 36.36 NA 32.26 NA 37.04 NA K alternative_last_exon CkIIbeta,I_chrX_11689220_11690898 chrX + chrX_11689220_11689764,chrX_11689220_11690898;chrX_11689220_11694025 chrX_11689220_11689633 chrX_11694026_11695678 chrX_11689634_11691961 chrX_11689138_11689219 81.25 80.36 78.46 64.71 76.19 81.25 68.75 83.06 81.21 71.88 85.42 77.78 65.28 84.13 77.59 79.41 82.35 81.48 81.58 73.03 89.13 80.00 86.11 82.46 77.14 74.47 77.36 81.25 86.27 86.54 72.46 88.75 90.29 81.65 75.47 85.71 86.79 85.19 80.00 89.47 85.07 78.95 78.18 80.65 84.75 85.86 76.27 89.62 83.59 80.00 79.10 81.25 81.82 76.00 80.30 77.36 84.51 87.97 K intron_retention Hrs,I_chr2L_2740474_2741107 chr2L + chr2L_2740474_2740519 chr2L_2740473_2740474;chr2L_2740519_2740520 chr2L_2740389_2740473;chr2L_2740520_2740784 0.00 0.00 0.00 5.68 0.00 3.85 5.13 0.00 2.50 NA 0.00 0.00 0.00 0.00 9.52 0.00 0.00 0.00 0.00 4.35 0.00 0.00 2.86 0.00 0.00 0.00 17.24 16.67 0.00 0.00 12.70 5.00 0.00 5.41 0.00 7.41 5.56 3.23 0.00 3.77 3.45 0.00 3.33 2.38 0.00 0.00 0.00 3.85 5.48 2.08 1.96 1.92 NA 0.00 5.88 0.00 3.45 0.00 K intron_retention CG6912 chr3R - chr3R_10962115_10962204 chr3R_10962114_10962115;chr3R_10962204_10962205 chr3R_10962052_10962114;chr3R_10962205_10962253 28.89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA 21.43 NA K intron_retention SelD,I_chr2R_10157899_10158045 chr2R - chr2R_10157680_10158045 chr2R_10157679_10157680;chr2R_10158045_10158046 chr2R_10157642_10157679;chr2R_10158046_10158145 12.09 17.02 8.85 10.76 10.53 15.22 12.09 9.15 12.57 12.24 12.90 12.08 12.33 9.57 8.55 8.57 13.89 7.59 8.99 11.16 9.52 13.89 11.57 17.72 16.44 8.82 12.79 15.79 21.95 13.64 7.32 16.67 9.84 10.14 13.51 4.17 15.38 16.18 12.75 15.83 8.00 10.53 14.71 19.30 12.77 11.11 9.57 13.58 10.85 12.50 11.11 13.16 7.89 9.80 12.17 10.10 12.33 7.50 K jcn_only_AD vib,RI_chr3R_15051793_15051920,RI_chr3R_15051793_15052186 chr3R - chr3R_15051793_15051920;chr3R_15051793_15052202 chr3R_15051793_15052186 chr3R_15051737_15051792;chr3R_15052203_15052286 1.77 0.69 1.69 2.25 1.35 0.67 1.61 2.58 0.83 0.00 3.70 2.48 2.20 2.54 1.71 2.25 1.25 0.96 3.36 3.00 3.12 2.20 1.04 3.66 2.83 0.00 1.94 2.67 1.15 2.82 0.68 1.75 1.23 1.87 0.77 3.85 3.15 0.00 1.47 1.31 2.56 0.38 0.00 1.53 4.84 1.53 1.60 3.33 2.68 3.12 1.77 0.00 1.86 0.70 1.17 2.52 2.30 2.48 K intron_retention Haspin chr2RHet + chr2RHet_3215563_3234342 chr2RHet_3215562_3215563;chr2RHet_3234342_3234343 chr2RHet_3215287_3215562;chr2RHet_3234343_3234575 0.00 NA NA 0.00 NA NA 13.64 6.67 2.94 NA NA 5.56 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA 3.45 NA 0.00 12.50 0.00 NA NA 0.00 NA 13.04 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 N alternative_acceptor RI_chr3L_9408567_9410728,RpS17,I_chr3L_9422428_9422797,snoRNA:Psi28S-612 chr3L - chr3L_9422408_9422794 chr3L_9422426_9422794 chr3L_9422795_9422827;chr3L_9422328_9422407 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8186676_8186737 chr2L_8186675_8186676;chr2L_8186737_8186738 chr2L_8186314_8186675;chr2L_8186738_8186884 0.00 0.00 1.06 0.95 0.00 0.00 1.30 0.56 1.15 0.95 0.62 1.13 0.69 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.58 1.34 0.00 0.67 0.00 0.00 2.87 3.77 3.33 0.00 1.13 0.00 0.00 0.00 1.42 2.11 0.00 0.00 0.88 1.37 0.00 0.76 0.00 0.00 1.08 1.89 0.00 2.24 1.49 0.00 1.29 1.63 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Tif-IA,RI_chr2L_22250854_22257652 chr2L + chr2L_22253333_22253424;chr2L_22253333_22253386 chr2L_22253333_22253421 chr2L_22253256_22253332;chr2L_22253425_22253685 86.67 NA NA NA NA NA 80.39 77.27 87.88 NA NA 92.59 NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA 85.00 NA NA NA 90.24 NA NA 96.67 NA NA NA NA 76.19 NA NA 86.21 NA NA NA 95.45 NA NA 86.67 NA 85.71 NA NA NA NA NA NA NA K jcn_only_AD fs(1)h,I_chrX_7947328_7948140,I_chrX_7950171_7952371,I_chrX_7954192_7955240 chrX - chrX_7947328_7948155 chrX_7947328_7948140 chrX_7947228_7947327;chrX_7948156_7948240 3.03 2.67 2.22 6.78 3.08 2.67 3.80 5.11 1.64 1.92 3.45 1.36 22.39 4.62 2.80 6.94 4.84 4.35 1.41 1.94 9.23 1.41 6.31 2.97 4.26 0.94 1.20 1.72 10.96 5.61 4.00 NA 5.63 2.92 0.00 3.49 3.21 1.27 5.07 3.68 6.98 5.88 2.82 2.60 1.96 6.12 2.94 2.52 3.37 5.88 2.20 1.82 4.17 0.00 2.52 0.00 0.00 4.76 K intron_retention CG14782,noncoding_21360 chrX + chrX_1374893_1375040 chrX_1374892_1374893;chrX_1375040_1375041 chrX_1374745_1374892;chrX_1375041_1375343 72.73 79.17 67.26 86.02 61.73 74.51 79.71 69.13 62.90 69.74 66.29 72.40 60.00 78.05 72.73 72.48 67.53 71.56 70.27 69.71 67.39 94.14 82.73 77.69 76.60 78.91 76.06 71.52 73.61 76.07 80.95 67.15 66.67 72.15 78.07 78.46 74.79 74.44 71.01 62.28 76.32 71.24 73.17 54.64 70.79 73.09 75.48 66.03 69.40 75.25 83.65 78.49 71.65 82.73 73.44 81.29 70.47 55.19 K intron_retention msn,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2560296_2561931 chr3L_2560295_2560296;chr3L_2561931_2561932 chr3L_2560116_2560295;chr3L_2561932_2562031 13.48 13.89 25.93 28.26 33.33 17.39 37.50 32.50 24.21 10.26 30.00 10.62 NA 13.33 20.00 33.33 16.67 25.00 29.41 17.54 33.33 23.47 8.67 7.51 8.97 46.15 10.34 15.38 12.64 9.71 23.81 12.77 10.67 24.53 13.51 6.25 8.09 7.14 7.09 12.39 18.42 13.51 16.67 18.18 12.16 9.26 8.33 10.14 13.89 13.11 12.12 13.24 3.39 13.46 43.75 8.75 6.85 0.00 K intron_retention CG9674,I_chr3L_16785451_16785540,I_chr3L_16785706_16785748,I_chr3L_16793055_16800660 chr3L - chr3L_16784791_16784918 chr3L_16784790_16784791;chr3L_16784918_16784919 chr3L_16784681_16784790;chr3L_16784919_16785137 34.05 40.91 40.00 46.15 38.46 40.00 29.27 35.48 38.78 38.46 NA 25.00 33.33 34.78 29.17 55.00 43.75 16.67 45.45 32.56 NA 31.25 50.00 26.67 25.00 25.00 23.53 18.52 29.17 35.00 22.50 NA 56.25 32.00 46.67 NA 36.59 34.78 31.71 21.74 53.85 36.59 35.71 29.41 33.33 36.36 47.83 60.00 28.57 21.05 26.83 33.33 18.75 28.57 44.44 30.77 NA 69.23 K alternative_donor CG10664,REI_chr2L_19958910_19959266 chr2L + chr2L_19958765_19959266 chr2L_19958769_19959266 chr2L_19959267_19959366;chr2L_19958700_19958764 7.78 5.77 10.42 10.14 7.20 7.78 10.53 6.45 7.28 4.88 5.77 8.08 6.56 8.51 8.23 10.29 8.55 9.65 11.54 7.84 10.53 11.11 6.25 6.45 4.55 10.00 0.00 0.00 13.79 5.88 8.66 7.69 16.67 7.10 0.00 NA 5.62 3.33 9.43 0.97 15.38 7.27 7.89 2.27 8.43 8.33 2.94 10.00 9.55 5.71 2.04 4.44 6.56 NA 8.33 10.34 2.82 11.84 K jcn_only_AA CG17698 chr3L + chr3L_23739645_23740858;chr3L_23739645_23740972;chr3L_23739645_23741050 chr3L_23739645_23741523 chr3L_23739290_23739644 1.47 6.25 NA 8.77 0.00 4.35 2.60 1.47 3.00 NA NA 0.00 0.00 2.63 NA 4.29 0.00 NA 0.00 4.29 NA NA 0.00 0.00 NA 8.00 13.51 NA NA NA 3.33 NA NA 1.67 NA 10.00 NA 4.76 NA 0.00 NA 7.25 3.85 0.00 NA 0.00 NA NA 1.56 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA K jcn_only_AA CG15715,RI_chr3L_15829349_15830356,I_chr3L_15830026_15830356,RI_chr3L_15830030_15830191,RI_chr3L_15830229_15830356 chr3L - chr3L_15830026_15830356;chr3L_15830229_15830356 chr3L_15830030_15830356 chr3L_15830357_15830456;chr3L_15830007_15830025 97.12 100.00 96.67 92.56 97.44 94.44 91.86 99.14 96.61 94.74 97.22 97.90 92.16 98.57 95.88 96.12 98.21 85.71 96.34 97.78 97.78 96.30 97.17 97.12 98.36 93.94 98.92 98.15 92.11 100.00 100.00 100.00 97.67 98.54 100.00 98.53 96.49 93.83 91.55 95.60 94.12 100.00 96.97 96.92 94.44 94.12 98.41 97.44 95.81 98.70 98.92 94.34 93.83 94.19 100.00 95.19 98.29 98.98 K cassette CPTI,I_chr2R_6358255_6359122,RI_chr2R_6358779_6358944,I_chr2R_6360956_6365128 chr2R - chr2R_6358255_6359122;chr2R_6358779_6359122 chr2R_6358255_6358944,chr2R_6358779_6358944;chr2R_6359011_6359122 chr2R_6358945_6359010 chr2R_6358234_6358254;chr2R_6359123_6359222 0.00 0.00 0.00 1.14 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.04 0.00 1.54 5.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 1.52 0.00 0.00 4.35 0.00 1.82 1.79 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 1.82 0.00 0.00 2.17 0.00 2.50 0.00 0.00 0.00 K intron_retention Arf51F,I_chr2R_11210733_11210953 chr2R + chr2R_11210218_11210628 chr2R_11210217_11210218;chr2R_11210628_11210629 chr2R_11209979_11210217;chr2R_11210629_11210646 86.27 86.11 97.62 87.04 85.71 85.00 83.33 85.48 85.33 84.38 81.25 81.01 79.41 91.89 92.31 93.18 89.19 96.00 90.24 87.64 91.30 93.94 87.93 90.00 82.50 85.42 87.30 96.55 87.50 83.67 92.68 82.50 83.33 84.48 92.50 81.25 92.45 87.10 86.27 78.57 82.35 90.12 91.67 81.08 77.19 85.42 78.57 85.71 95.65 88.57 84.78 88.24 80.65 87.88 94.12 84.09 84.78 89.55 K cassette Fis1,I_chr2R_1491917_1491981,I_chr2R_1491917_1492087,I_chr2R_1492154_1492214 chr2R - chr2R_1491917_1492087 chr2R_1491917_1491972;chr2R_1492022_1492087 chr2R_1491973_1492021 chr2R_1491817_1491916;chr2R_1492088_1492153 98.41 98.04 98.36 97.80 100.00 100.00 96.95 99.25 99.35 95.45 100.00 100.00 100.00 100.00 98.18 97.26 98.39 96.36 98.88 99.32 97.78 96.55 98.41 98.41 97.14 97.83 98.28 94.74 94.74 94.44 98.99 97.44 96.30 99.28 97.83 100.00 100.00 97.87 100.00 98.46 96.43 99.22 98.46 98.04 100.00 98.55 100.00 100.00 98.44 98.33 100.00 97.62 100.00 98.21 98.82 100.00 98.90 98.00 K jcn_only_AA CG8786 chr3L - chr3L_19633419_19634164;chr3L_19633702_19634164 chr3L_19634085_19634164 chr3L_19634165_19634318;chr3L_19632984_19633418 16.52 NA NA NA NA NA 33.33 8.70 NA NA NA 34.48 NA NA NA NA NA NA NA 2.78 NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 13.04 NA 26.09 NA NA NA NA NA NA 3.70 NA NA NA NA NA NA NA NA NA K intron_retention ERR chr3L - chr3L_8177528_8177583 chr3L_8177527_8177528;chr3L_8177583_8177584 chr3L_8176583_8177527;chr3L_8177584_8178142 3.03 0.00 0.00 2.27 0.00 0.00 5.71 2.56 0.00 0.00 4.17 4.88 9.09 0.00 0.00 0.00 0.00 6.90 0.00 4.00 0.00 11.54 6.25 8.51 2.70 9.09 4.44 3.23 0.00 3.03 16.67 0.00 0.00 0.00 8.33 0.00 5.56 0.00 4.84 8.00 0.00 4.00 NA 3.03 12.00 10.53 5.77 0.00 5.88 3.70 3.57 0.00 0.00 0.00 7.89 5.56 0.00 12.50 K intron_retention BM-40-SPARC,I_chr3R_22696095_22697413 chr3R - chr3R_22695853_22695914 chr3R_22695852_22695853;chr3R_22695914_22695915 chr3R_22694664_22695852;chr3R_22695915_22696094 0.80 0.76 1.26 1.14 0.58 0.85 0.79 0.80 0.75 0.61 0.57 0.86 0.77 1.12 0.88 0.88 0.69 0.87 0.79 0.79 0.80 0.67 0.76 0.81 0.70 0.68 1.23 0.23 0.72 0.60 1.37 0.74 0.45 0.92 0.98 1.05 1.00 0.81 0.88 1.65 0.78 0.75 1.06 0.39 0.70 1.02 0.98 0.88 0.91 0.79 0.99 0.59 0.50 0.85 1.47 0.88 0.46 0.36 K intron_retention MRP,F_chr2L_12727117_12736035 chr2L + chr2L_12738177_12738240 chr2L_12738176_12738177;chr2L_12738240_12738241 chr2L_12737959_12738176;chr2L_12738241_12738747 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Tfb1 chr2R + chr2R_10251420_10251477 chr2R_10251419_10251420;chr2R_10251477_10251478 chr2R_10251081_10251419;chr2R_10251478_10252440 0.00 0.00 0.00 1.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Ppn,F_chr3R_24347009_24347078 chr3R - chr3R_24351030_24351592 chr3R_24351030_24351138;chr3R_24351310_24351592 chr3R_24351139_24351309 chr3R_24350630_24351029;chr3R_24351593_24351772 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 K jcn_only_AD CoRest,I_chrX_19416977_19417035 chrX + chrX_19416603_19417035;chrX_19416977_19417035;chrX_19416431_19417035;chrX_19416423_19417035 chrX_19416669_19417035 chrX_19417036_19417135;chrX_19416201_19416422 29.55 22.41 27.78 25.30 32.31 17.86 30.00 30.77 33.33 33.78 38.71 16.42 20.34 32.76 23.29 21.92 17.14 29.23 32.76 24.31 29.41 27.59 24.68 23.45 20.55 25.00 32.80 34.00 40.19 37.25 24.29 32.91 38.74 30.93 26.61 37.60 32.89 20.38 31.06 37.37 36.00 28.67 19.61 23.86 17.65 30.43 24.75 33.88 24.81 31.11 22.08 25.64 31.17 29.55 29.76 30.21 43.18 36.05 K intron_retention CG11695,RI_chrX_11473566_11473702,I_chrX_11475074_11475402 chrX + chrX_11471852_11471909 chrX_11471851_11471852;chrX_11471909_11471910 chrX_11471178_11471851;chrX_11471910_11472107 5.63 2.70 5.63 2.25 4.35 6.90 4.21 5.50 2.45 6.00 4.35 4.69 4.08 0.00 0.00 1.80 2.50 4.11 5.00 4.57 5.08 24.29 9.28 4.95 18.00 13.64 9.33 16.67 18.75 10.45 17.58 7.79 11.11 3.19 8.45 14.71 11.11 4.84 6.71 8.11 16.90 5.13 3.33 6.56 10.75 11.11 5.00 12.36 5.83 10.62 6.06 10.53 2.27 4.00 2.94 4.72 4.05 8.08 K intron_retention ImpL2 chr3L - chr3L_4224852_4224926 chr3L_4224851_4224852;chr3L_4224926_4224927 chr3L_4224068_4224851;chr3L_4224927_4225706 0.40 0.00 0.63 0.34 0.00 0.00 1.01 0.40 1.74 0.40 0.00 0.92 1.00 2.14 0.61 0.65 0.00 0.76 0.49 0.43 0.00 0.62 0.00 0.00 0.00 0.00 1.98 3.77 1.19 0.00 0.33 0.42 0.00 0.87 0.34 0.00 0.31 0.00 0.67 0.74 0.27 1.16 0.00 0.00 0.00 1.21 0.64 0.00 0.72 0.25 1.01 0.00 0.00 0.74 0.54 0.00 0.99 0.00 N alternative_donor CG17233,RI_chr3L_20232898_20232962 chr3L - chr3L_20233633_20234944;chr3L_20233633_20234218;chr3L_20233633_20234374 chr3L_20233633_20234418 chr3L_20232963_20233632;chr3L_20234945_20234989 83.33 81.82 80.00 81.25 88.89 87.50 85.71 73.68 89.29 100.00 87.50 80.95 83.33 88.89 84.62 76.47 77.78 90.00 81.82 69.23 77.78 64.29 83.33 91.67 81.82 88.89 84.62 75.00 88.89 86.67 85.71 88.89 81.25 72.22 80.00 90.91 86.67 83.33 84.62 86.96 90.91 82.61 77.78 85.71 81.82 85.71 88.89 80.00 79.17 75.00 85.71 80.00 90.91 100.00 80.00 81.82 80.00 90.48 K intron_retention CG5691,REI_chr3L_1962156_1962235 chr3L - chr3L_1962721_1962802 chr3L_1962720_1962721;chr3L_1962802_1962803 chr3L_1962644_1962720;chr3L_1962803_1962913 0.00 NA NA NA NA NA 7.69 NA 0.00 NA NA 14.29 NA NA NA NA NA NA NA NA NA 29.17 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor TMS1 chr3L + chr3L_16407594_16407920;chr3L_16407594_16407905;chr3L_16407594_16407914;chr3L_16407594_16407902 chr3L_16407594_16407893 chr3L_16407384_16407593;chr3L_16407921_16408056 46.95 46.75 51.97 34.47 46.53 48.65 29.90 47.13 49.55 38.18 52.83 43.08 53.47 54.22 52.07 52.43 60.23 45.92 48.45 46.18 51.96 49.57 44.94 46.01 47.66 65.98 46.30 67.92 46.79 47.95 40.68 42.95 50.21 47.40 49.52 40.87 40.34 46.10 44.39 46.39 48.17 49.58 51.16 40.83 50.21 46.95 46.05 46.09 47.78 41.77 45.71 52.44 37.11 44.23 50.00 46.88 47.74 36.29 K intron_retention CE_chrX_20766225_20927825,CG1518,snoRNA:MeU2-C28,snoRNA:Me28S-U3344a chrX - chrX_20922633_20922942 chrX_20922632_20922633;chrX_20922942_20922943 chrX_20922153_20922632;chrX_20922943_20923230 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.69 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 2.63 2.50 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.37 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.50 K cassette Gprk1,R_chr2R_238724_265876,RI_chr2R_357455_358274 chr2R - chr2R_295538_345527 chr2R_295538_315440;chr2R_315503_345527 chr2R_315441_315502 chr2R_295486_295537;chr2R_345528_345602 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention CG12162,I_chr3R_1293876_1293924,I_chr3R_1294319_1294410 chr3R + chr3R_1294753_1294807 chr3R_1294752_1294753;chr3R_1294807_1294808 chr3R_1294411_1294752;chr3R_1294808_1295342 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.71 2.86 1.61 2.38 2.56 0.00 0.00 2.41 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 1.03 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 K jcn_only_AD RI_chr2R_12912984_12913058,RhoGEF2 chr2R + chr2R_12914834_12916177;chr2R_12914845_12916177;chr2R_12914941_12916177 chr2R_12914849_12916177 chr2R_12916178_12916526;chr2R_12914830_12914833 4.65 NA NA 6.06 NA NA 2.78 12.82 2.33 NA NA 4.65 0.00 3.03 NA 4.76 NA NA 9.09 NA NA 0.00 4.00 NA NA NA NA NA 0.00 NA 6.45 NA NA 7.14 NA 8.70 NA NA NA 0.00 NA 10.34 0.00 9.52 NA 19.05 NA 2.17 2.38 NA 16.67 NA NA NA 4.76 NA NA 0.00 K intron_retention None chrU - chrU_1092161_1092213 chrU_1092160_1092161;chrU_1092213_1092214 0.00 0.00 0.00 4.71 NA 0.00 0.00 3.12 2.78 NA 0.00 7.02 3.85 5.00 0.00 4.88 2.94 NA 0.00 0.00 0.00 NA 8.33 4.76 NA NA NA NA NA NA 0.00 NA NA 3.03 NA NA NA NA NA 0.00 10.53 1.85 0.00 0.00 NA 7.41 NA NA 5.56 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention I_chr2R_17052549_17053657,LSm1 chr2R - chr2R_17057744_17057805 chr2R_17057743_17057744;chr2R_17057805_17057806 chr2R_17057390_17057743;chr2R_17057806_17057990 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 6.45 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5059,I_chr3L_20509233_20511440,I_chr3L_20509985_20510360 chr3L - chr3L_20509233_20509798 chr3L_20509232_20509233;chr3L_20509798_20509799 chr3L_20509133_20509232;chr3L_20509799_20509852 10.82 12.50 0.00 11.76 14.29 10.53 21.43 13.64 14.00 NA NA 8.16 23.08 9.09 17.39 7.41 10.53 5.56 8.33 11.11 7.69 NA NA 33.33 NA 7.14 NA NA NA NA 0.00 NA NA 17.39 NA NA NA NA NA NA NA 8.11 10.00 NA NA NA 35.71 NA 18.92 NA 35.71 NA NA NA 0.00 NA NA NA K intron_retention tlk chrX + chrX_3678062_3678076 chrX_3678061_3678062;chrX_3678076_3678077 chrX_3677710_3678061;chrX_3678077_3678169 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.33 100.00 99.07 100.00 100.00 99.43 100.00 99.15 100.00 100.00 100.00 99.42 99.28 100.00 100.00 99.60 100.00 100.00 100.00 100.00 100.00 100.00 99.61 100.00 99.52 100.00 100.00 100.00 98.88 100.00 99.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG5009 chr2R + chr2R_13651341_13651403 chr2R_13651340_13651341;chr2R_13651403_13651404 chr2R_13651235_13651340;chr2R_13651404_13651556 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 8.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL38 chr2R - chr2R_403825_403882 chr2R_403824_403825;chr2R_403882_403883 chr2R_402515_403824;chr2R_403883_404003 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 K intron_retention Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16112918_16113013 chr3L_16112917_16112918;chr3L_16113013_16113014 chr3L_16112792_16112917;chr3L_16113014_16114398 0.81 1.90 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 1.18 3.51 0.00 0.00 1.27 0.00 0.00 0.00 2.01 0.00 1.40 2.34 1.99 0.84 0.00 1.63 2.86 0.00 0.00 0.00 1.59 0.39 1.54 0.00 0.00 0.96 0.00 0.81 1.26 1.33 2.17 3.33 1.48 0.98 1.66 0.79 0.97 1.33 0.71 1.16 0.00 0.00 0.00 1.30 1.57 0.00 1.63 K alternative_acceptor Nrt chr3L + chr3L_16767467_16767532 chr3L_16767467_16767529 chr3L_16766814_16767466;chr3L_16767533_16770386 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA 96.67 NA NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 100.00 100.00 100.00 100.00 NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA 100.00 100.00 K intron_retention pst,I_chr3L_7352698_7352777 chr3L - chr3L_7352703_7352777 chr3L_7352702_7352703;chr3L_7352777_7352778 chr3L_7352634_7352702;chr3L_7352778_7352877 0.00 NA NA 4.35 NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 6.25 NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD n-syb,I_chr3L_1637270_1637558,metl chr3L - chr3L_1638855_1639041 chr3L_1638855_1638908 chr3L_1637903_1638854;chr3L_1639042_1639220 29.05 12.35 22.73 41.33 41.94 32.31 31.88 25.93 36.79 30.95 31.25 28.70 29.09 26.67 20.31 18.75 44.74 50.00 29.85 29.05 31.03 21.82 4.67 26.25 14.29 17.65 30.00 29.79 48.94 44.00 30.88 43.90 37.70 22.02 19.44 30.00 33.33 16.98 17.20 40.82 33.33 27.35 14.29 33.33 38.04 22.14 17.58 66.67 30.16 19.23 13.51 24.00 18.42 14.88 26.03 16.67 12.38 40.54 K jcn_only_AD Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_137257_137445 chr4_137257_137311 chr4_137167_137256;chr4_137446_139127 100.00 100.00 100.00 99.23 NA 100.00 99.26 99.26 100.00 NA 100.00 100.00 100.00 100.00 100.00 99.36 100.00 NA 100.00 100.00 NA NA 100.00 98.08 100.00 NA 100.00 NA NA NA 100.00 100.00 NA 99.14 100.00 NA NA NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 99.29 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8107426_8107747 chr2L + chr2L_8083522_8089393 chr2L_8083522_8083901;chr2L_8084391_8089393 chr2L_8083902_8084390 chr2L_8083444_8083521;chr2L_8089394_8089493 10.00 12.50 5.88 6.98 NA 10.00 8.89 6.67 5.97 NA 14.29 7.14 5.00 4.76 12.50 6.98 10.00 28.57 5.26 4.44 18.18 80.00 50.00 60.00 NA NA NA NA 27.27 42.86 9.09 NA 23.08 6.45 NA NA 20.00 NA NA 15.38 8.33 9.09 12.50 NA NA 10.00 NA 20.00 6.06 NA NA NA NA NA 7.69 NA NA 11.11 K intron_retention wgn chrX - chrX_18523285_18528441 chrX_18523284_18523285;chrX_18528441_18528442 chrX_18522808_18523284;chrX_18528442_18528954 0.00 0.00 0.00 2.00 0.00 0.00 6.82 4.17 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 2.56 0.00 2.15 0.00 9.09 1.32 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 4.76 0.00 0.00 0.00 1.47 0.00 1.37 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 1.75 K jcn_only_AA brat,I_chr2L_19134277_19143634,EI_chr2L_19145845_19145958,RI_chr2L_19145845_19146761 chr2L + chr2L_19145845_19166084 chr2L_19145845_19145958 chr2L_19145819_19145844;chr2L_19166085_19166125 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA 4.17 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention pes chr2L - chr2L_7988328_7988392 chr2L_7988327_7988328;chr2L_7988392_7988393 chr2L_7987113_7988327;chr2L_7988393_7989177 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Dab chr3L + chr3L_16715102_16715163 chr3L_16715101_16715102;chr3L_16715163_16715164 chr3L_16714358_16715101;chr3L_16715164_16715293 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 1.25 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG6876,CG6878 chr3L + chr3L_15152877_15152938 chr3L_15152876_15152877;chr3L_15152938_15152939 chr3L_15152425_15152876;chr3L_15152939_15153557 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.94 0.00 0.00 1.37 0.00 0.00 0.00 3.03 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG40439,I_chr2L_22690863_22690905 chr2L - chr2L_22690836_22690905 chr2L_22690835_22690836;chr2L_22690905_22690906 chr2L_22690763_22690835;chr2L_22690906_22691005 2.51 5.13 4.17 2.52 0.00 0.00 1.16 1.72 2.72 NA 0.00 4.21 3.70 1.37 0.00 2.35 0.00 3.12 5.56 3.80 0.00 10.53 0.00 0.00 10.71 0.00 8.70 10.00 12.50 0.00 0.00 0.00 NA 0.00 7.14 15.79 0.00 NA NA 6.06 0.00 2.50 0.00 0.00 7.14 4.76 0.00 0.00 5.21 11.63 9.09 7.32 6.67 NA 4.55 0.00 3.17 0.00 K intron_retention dia chr2L + chr2L_20758386_20760524 chr2L_20758385_20758386;chr2L_20760524_20760525 chr2L_20758126_20758385;chr2L_20760525_20760841 64.97 62.50 80.00 84.00 46.67 81.82 75.00 64.52 72.09 29.41 64.29 68.42 68.75 70.00 65.38 66.67 77.78 56.25 76.47 64.71 58.82 81.25 44.83 69.23 63.64 85.71 73.08 70.59 35.29 66.67 81.82 60.00 57.14 81.25 75.00 80.00 60.00 50.00 63.64 61.29 NA 68.75 62.50 60.00 NA NA NA 73.68 58.82 52.94 56.25 60.00 60.00 NA 65.22 81.82 53.85 60.00 K intron_retention ORMDL chr3L + chr3L_21628662_21628717 chr3L_21628661_21628662;chr3L_21628717_21628718 chr3L_21628596_21628661;chr3L_21628718_21628785 9.76 9.76 10.00 26.53 8.22 11.54 18.29 8.24 12.77 19.35 19.67 10.08 10.87 5.88 8.86 8.62 7.94 11.48 3.17 10.47 13.58 21.82 10.42 7.37 26.83 24.14 10.42 8.99 41.43 10.84 12.50 8.43 11.63 7.48 5.56 26.92 8.85 9.09 8.57 7.92 24.56 8.66 8.70 7.14 6.98 6.67 7.37 4.92 4.00 9.01 10.00 14.00 6.38 10.42 14.10 9.80 7.86 1.16 K jcn_only_AD CG31716,I_chr2L_10397648_10398034 chr2L + chr2L_10398741_10399316 chr2L_10398750_10399316 chr2L_10399317_10399535;chr2L_10398654_10398740 28.76 33.33 39.06 37.23 30.00 26.23 25.26 24.24 27.70 8.00 24.14 23.26 44.44 26.92 26.87 25.00 32.88 27.12 28.57 36.80 36.54 35.00 33.33 36.84 NA 20.00 31.58 NA 36.67 37.84 32.50 21.62 NA 25.42 24.39 25.00 39.39 19.23 40.62 8.00 40.00 29.55 31.03 31.03 NA 38.89 NA 27.50 22.68 18.52 34.43 15.00 12.00 31.82 36.84 28.95 13.33 28.57 K jcn_only_AA CG3419 chr2R + chr2R_20301935_20302017;chr2R_20301935_20301994 chr2R_20301935_20301990 chr2R_20299701_20301934;chr2R_20302018_20302306 13.04 NA NA NA NA NA NA 12.50 20.00 NA NA 13.04 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention chic,RI_chr2L_5976783_5980950,I_chr2L_5979705_5979818,I_chr2L_5979705_5979941,RI_chr2L_5979705_5979951,I_chr2L_5979705_5979953,I_chr2L_5979705_5980025,I_chr2L_5979705_5980213,I_chr2L_5979705_5980370,I_chr2L_5979705_5980558,I_chr2L_5979705_5980632,I_chr2L_5979705_5980639,RI_chr2L_5979705_5980734 chr2L - chr2L_5979705_5980950 chr2L_5979704_5979705;chr2L_5980950_5980951 chr2L_5979605_5979704;chr2L_5980951_5981025 0.93 0.00 0.00 2.21 1.63 0.00 0.00 0.60 1.73 2.27 0.93 1.35 1.56 1.57 1.16 1.08 0.00 4.58 1.01 0.91 0.00 0.70 1.16 0.00 0.00 2.05 4.62 5.41 4.76 0.00 1.20 0.00 0.42 0.64 1.27 0.00 5.26 1.59 0.00 1.74 0.37 1.57 0.00 1.49 0.95 0.59 0.00 0.26 1.51 0.00 2.67 0.00 0.66 0.00 0.43 2.86 2.61 0.67 N intron_retention RpS27A chr2L + chr2L_10410157_10410240 chr2L_10410156_10410157;chr2L_10410240_10410241 chr2L_10408388_10410156;chr2L_10410241_10410467 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 67.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 86.59 100.00 K jcn_only_AA Spn5,CG6687 chr3R - chr3R_11030270_11032070 chr3R_11030273_11032070 chr3R_11032071_11032377;chr3R_11029272_11030269 86.64 87.85 85.99 85.39 85.03 88.39 86.18 87.45 87.09 86.86 86.64 88.82 85.93 86.85 89.15 85.71 87.37 87.56 89.34 85.47 87.04 85.33 86.30 87.03 86.05 87.45 86.12 77.93 84.82 87.04 85.07 79.70 84.96 87.28 87.89 88.82 86.36 87.50 89.94 85.00 86.74 86.20 85.34 85.48 85.88 87.22 86.33 81.43 87.42 86.49 86.67 88.18 86.21 86.13 88.27 88.71 88.55 79.48 K intron_retention Eph,I_chr4_639690_640473,I_chr4_640410_640485,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_640410_640473 chr4_640409_640410;chr4_640473_640474 chr4_640310_640409;chr4_640474_640573 0.00 0.00 0.00 1.41 0.00 0.00 0.00 2.50 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA faf,RI_chr3R_27603474_27603893,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27604481_27605081 chr3R_27604481_27604751 chr3R_27603894_27604480;chr3R_27605082_27605230 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.20 0.00 0.00 0.00 0.00 0.00 21.43 15.15 0.00 0.00 0.00 7.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K alternative_acceptor mRpL39 chr3L - chr3L_14991714_14991895 chr3L_14991723_14991895 chr3L_14991896_14991996;chr3L_14991280_14991713 100.00 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 97.14 96.43 100.00 100.00 100.00 100.00 96.97 100.00 98.25 95.65 97.30 97.87 100.00 96.00 97.44 100.00 100.00 100.00 100.00 95.65 100.00 98.36 100.00 98.25 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention yata chr3R + chr3R_25577792_25577860 chr3R_25577791_25577792;chr3R_25577860_25577861 chr3R_25577646_25577791;chr3R_25577861_25577989 0.00 0.00 0.00 0.57 0.00 0.00 1.31 0.56 0.34 0.00 0.77 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 2.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.72 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Rbp2,I_chrX_16343528_16343906 chrX + chrX_16344535_16345307 chrX_16344634_16345307 chrX_16345308_16345592;chrX_16344347_16344534 5.32 5.39 14.29 4.64 5.56 7.69 6.25 4.65 3.41 7.07 12.77 2.23 0.00 0.00 7.41 5.88 7.89 10.87 5.56 2.86 15.91 2.78 5.60 5.26 3.21 7.89 5.32 1.49 11.07 5.29 13.04 6.88 4.89 4.02 4.04 3.53 4.88 4.74 5.77 1.77 2.72 4.36 9.09 10.65 4.61 5.65 5.02 7.47 4.52 1.23 4.19 5.47 9.15 4.79 6.25 5.24 6.16 9.54 K multi_cassette cora,I_chr2R_15125277_15130573,I_chr2R_15125940_15130208,I_chr2R_15129291_15129988 chr2R + chr2R_15125940_15130208 chr2R_15125940_15126293;chr2R_15128442_15128462;chr2R_15129291_15129678;chr2R_15129901_15129988;chr2R_15130091_15130208 chr2R_15126294_15128441;chr2R_15128463_15129290;chr2R_15129679_15129900;chr2R_15129989_15130090 chr2R_15125887_15125939;chr2R_15130209_15130308 100.00 100.00 100.00 99.82 100.00 100.00 100.00 100.00 100.00 99.49 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG13900,I_chr3L_830745_830907 chr3L - chr3L_830729_830907 chr3L_830728_830729;chr3L_830907_830908 chr3L_830717_830728;chr3L_830908_831007 3.02 5.26 1.03 7.20 1.56 5.00 8.11 2.52 2.16 5.26 0.00 2.01 1.41 3.90 3.81 2.34 1.32 0.00 0.00 3.72 2.60 8.64 4.21 9.30 6.45 0.00 5.31 9.76 0.00 3.57 0.56 4.92 5.49 3.12 7.32 6.90 3.05 2.47 2.34 5.83 0.00 4.07 1.39 3.57 0.00 0.00 0.00 3.12 3.02 0.00 5.45 2.15 0.00 3.70 0.93 0.00 0.00 8.57 K intron_retention Galpha49B,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8504447_8504576 chr2R_8504446_8504447;chr2R_8504576_8504577 chr2R_8504292_8504446;chr2R_8504577_8504634 0.00 0.00 1.30 6.25 0.00 0.00 2.17 5.04 2.50 0.00 0.00 0.00 1.52 0.00 2.78 1.77 0.00 0.00 0.00 3.10 0.00 0.00 0.00 0.00 1.69 1.79 0.00 0.00 0.00 0.00 0.00 0.00 5.15 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 3.82 0.00 0.00 0.00 0.00 0.00 0.00 1.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG10089,I_chr3L_13460276_13460443 chr3L - chr3L_13460240_13460443 chr3L_13460276_13460443 chr3L_13460444_13460543;chr3L_13460176_13460239 0.00 NA NA 5.56 NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 5.00 0.00 NA 0.00 0.00 NA 9.09 NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 K intron_retention RpS3A chr4 - chr4_86148_86625 chr4_86147_86148;chr4_86625_86626 chr4_85683_86147;chr4_86626_86675 0.00 0.00 0.00 0.34 NA 0.00 0.00 0.00 2.27 NA NA 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 NA 4.65 NA NA NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 6.06 K intron_retention qtc chr2L + chr2L_5068395_5070096 chr2L_5068394_5068395;chr2L_5070096_5070097 chr2L_5068296_5068394;chr2L_5070097_5070299 30.60 NA 23.53 38.46 NA 36.36 46.15 35.29 18.18 NA NA 30.43 60.00 NA 33.33 30.00 NA NA NA 26.67 NA NA NA NA NA NA NA NA NA NA NA 14.29 17.65 35.29 NA NA NA NA NA 33.33 NA 36.84 NA NA NA 41.67 0.00 16.67 30.77 NA 22.22 NA 14.29 36.36 30.77 NA 11.11 21.43 K intron_retention cul-2,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21661637_21662083 chr2L_21661636_21661637;chr2L_21662083_21662084 chr2L_21661537_21661636;chr2L_21662084_21662183 0.00 0.00 0.00 3.49 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 4.35 0.00 2.04 0.00 0.00 5.49 2.67 6.45 0.00 3.57 0.00 0.00 0.00 2.94 1.69 0.00 0.00 0.00 0.00 1.54 2.47 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 N jcn_only_AD I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545799_17545850;chr2R_17545767_17545850;chr2R_17545781_17545850;chr2R_17545686_17545850;chr2R_17545690_17545850 chr2R_17545615_17545850 chr2R_17545851_17545985;chr2R_17545613_17545614 46.25 47.95 75.71 71.91 78.82 74.16 53.68 73.39 71.26 11.11 67.19 67.83 72.88 70.69 76.79 42.53 78.26 70.59 82.19 70.78 62.50 46.67 0.00 2.56 17.39 64.86 10.53 NA 16.22 11.43 66.67 44.23 45.83 75.70 30.43 12.50 19.40 16.98 16.67 16.13 31.43 78.49 72.46 20.00 63.16 22.95 23.21 21.95 71.55 12.20 8.93 12.90 60.00 4.88 70.27 14.29 24.69 36.84 K alternative_donor Gga chrX + chrX_9495403_9496113 chrX_9495445_9496113 chrX_9496114_9496708;chrX_9495287_9495402 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 98.04 100.00 98.21 100.00 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 K jcn_only_AA eIF2B-delta chr2R + chr2R_19274146_19274312;chr2R_19274146_19274464 chr2R_19274146_19274529 chr2R_19274016_19274145 85.56 97.14 86.49 75.71 NA 83.87 87.78 87.14 89.62 NA 67.65 91.49 44.12 81.82 89.19 86.89 85.29 93.94 78.43 94.37 79.31 86.89 87.04 86.36 71.43 83.33 82.22 82.98 85.71 92.00 86.36 NA NA 80.28 73.08 93.33 87.50 96.88 95.65 82.50 65.00 93.94 71.79 88.24 NA 84.78 90.62 88.00 78.72 82.35 83.33 85.42 85.71 84.00 76.60 75.86 85.00 95.00 K intron_retention BHD chr3L + chr3L_7232894_7232982 chr3L_7232893_7232894;chr3L_7232982_7232983 chr3L_7231645_7232893;chr3L_7232983_7233085 1.47 5.88 NA 22.22 NA NA 0.00 0.00 2.94 NA NA 5.56 NA NA NA NA NA NA NA 11.11 NA 59.09 0.00 NA NA NA NA NA 15.38 NA NA NA 6.25 0.00 NA NA NA NA NA 21.43 NA 7.14 NA 0.00 NA 0.00 5.56 0.00 NA 0.00 NA NA NA NA NA 0.00 0.00 0.00 K intron_retention CG10417,E_chr2R_1248333_1249215,RI_chr2R_1248452_1248523 chr2R - chr2R_1249055_1249103 chr2R_1249054_1249055;chr2R_1249103_1249104 chr2R_1248524_1249054;chr2R_1249104_1250072 0.00 1.19 0.00 0.00 0.00 0.00 0.83 1.14 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 7.14 3.12 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1812,noncoding_24986 chrX + chrX_20384779_20384857 chrX_20384778_20384779;chrX_20384857_20384858 chrX_20383929_20384778;chrX_20384858_20385217 7.55 NA NA 0.00 NA NA 17.65 0.00 11.76 NA NA 10.53 NA NA NA NA NA NA NA 12.50 NA 27.27 0.00 NA NA NA 11.11 NA 0.00 NA NA NA NA 6.25 NA 41.67 0.00 NA 6.25 7.41 NA 7.69 NA NA NA NA NA NA 9.09 NA 7.14 NA NA NA NA NA NA NA K intron_retention CG10209,SMC2,I_chr2R_10737857_10737917 chr2R - chr2R_10735477_10735704 chr2R_10735476_10735477;chr2R_10735704_10735705 chr2R_10735321_10735476;chr2R_10735705_10735869 0.00 NA NA NA NA NA 4.35 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 6.12 NA NA 0.00 0.00 NA NA NA NA 6.25 NA NA 0.00 7.41 0.00 NA NA NA NA NA 9.09 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 6.67 0.00 5.00 NA 0.00 NA 11.76 NA NA 0.00 K alternative_acceptor CG34413,I_chr2R_20770543_20770586,I_chr2R_20771136_20772048,I_chr2R_20773500_20774745 chr2R + chr2R_20770543_20770599 chr2R_20770543_20770586 chr2R_20770443_20770542;chr2R_20770600_20770686 0.00 1.12 0.74 0.00 0.00 0.00 0.58 0.45 0.48 0.00 0.00 0.00 0.00 0.00 0.70 0.00 1.06 0.00 0.00 0.00 1.94 0.00 1.37 0.00 0.00 0.00 2.46 0.00 0.59 0.00 0.56 0.00 0.00 0.52 1.00 1.82 0.00 1.39 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 K intron_retention Arf51F,I_chr2R_11210733_11210953 chr2R + chr2R_11210536_11210628 chr2R_11210535_11210536;chr2R_11210628_11210629 chr2R_11210467_11210535;chr2R_11210629_11210646 90.00 66.67 88.89 88.89 NA NA 90.91 87.50 93.33 NA NA 75.00 NA 100.00 92.31 91.67 NA 84.62 90.00 83.33 NA 100.00 63.64 81.82 63.64 NA 93.33 NA 90.00 87.50 83.33 NA 100.00 92.31 NA NA 92.31 NA 94.12 100.00 88.89 94.12 NA NA NA 84.62 90.00 90.91 87.50 NA NA NA NA NA 92.31 88.89 90.00 90.91 K intron_retention Syb chr2R - chr2R_6138092_6138383 chr2R_6138091_6138092;chr2R_6138383_6138384 chr2R_6138070_6138091;chr2R_6138384_6138649 5.26 12.50 5.26 4.33 0.00 5.71 11.76 4.58 10.31 2.33 6.19 8.05 5.26 7.50 5.26 5.10 0.00 1.82 8.33 5.03 5.71 15.56 11.54 4.48 0.00 6.67 6.56 9.09 4.26 1.82 3.49 1.15 1.35 7.41 2.13 0.00 5.41 13.04 5.41 0.85 0.00 4.08 0.00 2.38 0.72 1.20 8.00 2.22 10.26 4.55 9.26 11.54 8.33 6.12 7.69 3.77 8.00 2.07 K alternative_acceptor CG13384 chr2L + chr2L_8386386_8386483;chr2L_8386386_8386486 chr2L_8386386_8386474 chr2L_8386217_8386385;chr2L_8386487_8387378 23.31 24.15 22.94 23.58 24.75 24.19 23.08 23.34 27.41 26.30 23.38 24.52 23.99 23.15 21.78 26.58 20.86 22.58 23.12 25.97 23.82 22.49 24.57 23.31 23.79 24.28 21.62 20.25 22.22 20.40 24.80 23.02 21.81 25.15 22.67 21.81 25.55 25.68 27.02 19.84 23.05 24.15 26.39 22.81 22.95 22.46 21.25 23.97 23.12 24.76 26.68 23.62 20.00 22.10 24.10 23.17 21.43 21.68 K intron_retention obst-A chrX + chrX_20112889_20112958 chrX_20112888_20112889;chrX_20112958_20112959 chrX_20112685_20112888;chrX_20112959_20114165 5.56 5.56 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA 17.65 5.56 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA 10.53 NA 0.00 NA NA 11.11 13.33 NA NA 0.00 9.09 NA NA NA NA NA NA 30.77 NA K alternative_acceptor cic,RI_chr3R_16122222_16123529 chr3R + chr3R_16122222_16122818;chr3R_16122222_16124105 chr3R_16122222_16123529 chr3R_16122122_16122221;chr3R_16124106_16124254 2.35 1.77 2.06 2.70 1.20 1.20 5.08 1.86 1.79 4.76 1.37 2.29 2.60 2.56 0.75 5.06 1.11 1.59 2.35 1.33 1.01 23.57 1.05 2.34 2.59 7.37 3.88 10.28 8.45 5.00 1.04 4.17 5.69 0.72 2.50 11.72 3.92 1.67 2.66 2.53 3.92 0.91 1.32 4.46 12.20 2.22 1.69 6.33 1.61 3.33 2.27 4.17 2.44 1.45 0.81 1.64 0.00 2.67 K jcn_only_AA CG2316,I_chr4_208796_210623,I_chr4_209150_214298,I_chr4_209369_210623,I_chr4_209875_210055,I_chr4_209875_210628,I_chr4_209875_213969,RI_chr4_209875_214450,I_chr4_210688_211303,RI_chr4_210688_211927,I_chr4_210688_213991,I_chr4_210688_214019,I_chr4_210688_214049,RI_chr4_210688_214450 chr4 - chr4_209369_210623 chr4_209875_210623 chr4_210624_210636;chr4_209269_209368 100.00 NA 100.00 96.30 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 95.65 NA 100.00 100.00 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA 98.51 NA NA NA NA NA 100.00 NA NA NA K jcn_only_AA Gpo-1,I_chr2R_11747621_11747699,EI_chr2R_11747445_11747699,I_chr2R_11749758_11750187,I_chr2R_11756325_11756380 chr2R - chr2R_11748228_11750187;chr2R_11749758_11750187 chr2R_11748259_11750187 chr2R_11750188_11750219;chr2R_11748106_11748227 96.30 100.00 94.44 100.00 NA 92.31 90.79 100.00 92.73 94.59 90.91 97.37 92.86 88.46 100.00 100.00 100.00 NA 100.00 94.74 100.00 95.16 97.47 94.44 96.88 96.43 98.53 95.74 93.62 92.59 97.56 92.45 90.57 97.67 97.83 92.86 95.77 95.24 96.30 97.39 96.23 95.92 NA 93.55 97.37 96.92 98.72 100.00 97.01 89.29 96.97 96.61 85.19 97.73 93.55 97.62 NA 92.59 K jcn_only_AD CSN8,I_chr2L_8365282_8365388,I_chr2L_8367210_8367311 chr2L + chr2L_8365282_8365388 chr2L_8365329_8365388 chr2L_8365389_8365488;chr2L_8365182_8365281 100.00 100.00 97.30 98.80 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.15 100.00 100.00 100.00 99.16 100.00 100.00 98.78 98.18 100.00 100.00 98.81 98.82 100.00 85.71 100.00 100.00 98.21 100.00 98.67 100.00 98.63 100.00 100.00 97.73 98.39 100.00 100.00 100.00 97.83 100.00 100.00 97.37 100.00 100.00 100.00 98.81 98.46 100.00 100.00 97.87 98.41 100.00 100.00 99.07 99.22 98.95 K alternative_donor bnl,I_chr3R_15621238_15621299 chr3R - chr3R_15621238_15621935 chr3R_15621238_15621299 chr3R_15621138_15621237;chr3R_15621936_15622463 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA K jcn_only_AA tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_563485_567573;chr3R_563461_567573 chr3R_563503_567573 chr3R_567574_568885;chr3R_563195_563460 62.77 69.05 59.52 82.46 56.41 43.48 32.86 55.36 66.33 NA 37.50 56.00 79.55 65.22 70.21 75.38 62.50 62.86 62.86 59.04 60.00 64.00 60.00 74.36 NA 76.09 72.09 70.83 54.55 62.86 80.00 NA 58.49 62.86 52.17 69.57 58.14 77.78 45.95 62.69 51.28 67.53 57.58 59.38 58.06 82.22 34.38 77.42 60.00 70.97 44.44 77.78 NA NA 75.00 72.09 51.85 60.00 K intron_retention I_chr2L_6323791_6325172,Gef26,I_chr2L_6330719_6330770 chr2L + chr2L_6329698_6330770 chr2L_6329697_6329698;chr2L_6330770_6330771 chr2L_6329548_6329697;chr2L_6330771_6330832 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA 17.65 NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA 0.00 9.52 0.00 10.53 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA 13.33 NA K jcn_only_AD eIF-2beta,RI_chr3L_12519486_12519541 chr3L - chr3L_12519486_12519688;chr3L_12519486_12519596;chr3L_12519486_12519590 chr3L_12519486_12519541 chr3L_12519386_12519485;chr3L_12519689_12519829 0.46 0.65 0.32 0.00 0.00 2.23 0.81 0.00 0.41 0.97 0.52 0.84 1.08 0.00 0.00 0.69 0.56 0.37 0.37 0.18 0.38 0.34 0.45 0.53 2.90 0.74 0.62 0.46 0.00 0.35 3.53 0.47 0.54 0.28 0.82 0.00 1.52 0.00 2.25 0.00 0.00 0.00 0.48 0.46 1.18 1.32 0.57 0.47 0.95 0.34 0.00 0.00 0.00 0.86 0.00 0.55 0.00 0.69 K jcn_only_AA Keap1 chr3R - chr3R_12902225_12902298 chr3R_12902247_12902298 chr3R_12902299_12902615;chr3R_12901967_12902224 34.79 36.36 33.33 25.00 NA 23.08 37.93 25.93 35.00 27.14 NA 30.43 NA 33.33 22.22 33.33 33.33 36.00 NA 26.79 45.00 27.10 41.18 38.00 43.90 28.00 29.23 26.32 41.46 40.00 50.00 42.11 45.83 27.78 39.53 44.68 42.65 43.24 40.91 32.97 39.22 26.19 20.00 40.91 29.03 34.00 30.00 34.58 25.81 36.11 42.11 40.00 38.10 NA 28.95 38.10 30.43 35.59 K alternative_acceptor CG11006,F_chr3L_12799159_12799339 chr3L + chr3L_12799438_12799952;chr3L_12799438_12799955;chr3L_12799438_12800078;chr3L_12799438_12799967 chr3L_12799438_12800192 chr3L_12799340_12799437;chr3L_12800193_12800930 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA NA NA NA NA 100.00 NA 68.75 93.33 100.00 100.00 NA NA 92.86 100.00 100.00 NA NA 98.28 NA 100.00 100.00 91.67 100.00 96.15 95.92 100.00 100.00 NA 100.00 96.77 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 NA 100.00 K jcn_only_AA CG14225,I_chrX_19569702_19569879,I_chrX_19573364_19573474 chrX - chrX_19569689_19569836 chrX_19569702_19569836 chrX_19569837_19569924;chrX_19569602_19569688 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG5292 chr3R + chr3R_12978217_12978272 chr3R_12978216_12978217;chr3R_12978272_12978273 chr3R_12977451_12978216;chr3R_12978273_12978282 45.80 NA NA 46.15 NA NA 41.67 NA 30.00 NA NA 35.71 NA NA NA NA NA NA NA 22.73 NA NA 45.45 NA NA 77.78 NA NA 77.78 NA NA NA NA NA NA 88.24 NA NA NA NA 71.43 41.67 NA NA 55.56 40.00 NA 70.00 41.67 NA NA NA NA NA NA NA NA 70.00 K jcn_only_AD CG40191,I_chr2RHet_392279_392824 chr2RHet + chr2RHet_391927_392824;chr2RHet_392686_392824 chr2RHet_392279_392824 chr2RHet_392825_392923 2.38 NA NA NA NA 0.00 NA 0.00 0.00 NA NA 2.86 NA 7.69 5.00 0.00 NA 10.00 0.00 0.00 NA NA 0.00 8.70 NA NA 3.33 NA NA NA 12.50 NA NA 3.33 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA 7.41 2.94 NA 2.38 NA 0.00 NA NA 7.41 NA 0.00 8.00 NA K intron_retention Dap160,I_chr2L_21139943_21140007 chr2L - chr2L_21138031_21138711 chr2L_21138030_21138031;chr2L_21138711_21138712 chr2L_21137757_21138030;chr2L_21138712_21139602 14.29 NA NA 7.41 NA NA NA 33.33 14.29 NA NA NA NA NA NA NA NA NA NA 11.11 NA 14.29 6.67 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 14.29 NA NA NA NA 30.77 NA NA NA NA NA 35.71 14.29 NA 6.25 NA NA NA NA 14.29 NA 15.38 K alternative_acceptor Upf2,I_chrX_7969268_7969358,I_chrX_7969312_7969358 chrX - chrX_7969312_7969358;chrX_7969293_7969358;chrX_7969303_7969358 chrX_7969268_7969358 chrX_7969359_7969458;chrX_7969212_7969267 8.33 12.50 0.00 21.43 10.00 0.00 6.67 11.11 0.00 16.67 NA 8.33 8.33 0.00 9.09 23.08 25.00 0.00 0.00 8.33 16.67 7.69 7.69 16.67 0.00 0.00 NA 8.33 0.00 33.33 18.18 NA 14.29 4.76 0.00 0.00 18.75 0.00 0.00 15.38 NA 5.00 20.00 11.11 16.67 NA NA 0.00 25.00 25.00 33.33 NA 0.00 NA 7.69 NA 20.00 25.00 K intron_retention alpha-Cat,I_chr3L_23319861_23321813,I_chr3L_23322620_23322985,I_chr3L_23327841_23328002 chr3L - chr3L_23322499_23322985 chr3L_23322498_23322499;chr3L_23322985_23322986 chr3L_23322330_23322498;chr3L_23322986_23323085 0.00 0.00 0.00 0.79 2.17 0.00 0.88 2.26 1.41 0.00 0.00 0.00 4.00 3.90 0.00 3.12 0.00 0.00 1.45 2.48 0.00 0.00 1.49 1.96 0.00 0.00 3.28 3.03 0.00 0.00 3.49 0.00 1.54 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.74 0.00 2.78 2.08 3.12 0.00 2.15 0.00 6.45 0.00 K jcn_only_AD CG7530,I_chr3R_10553050_10555615,eff chr3R - chr3R_10553050_10556232 chr3R_10553050_10554503 chr3R_10552950_10553049;chr3R_10556233_10556351 19.18 18.30 17.20 20.38 18.24 17.24 26.83 25.97 19.84 22.73 18.58 22.87 20.00 21.99 24.56 27.78 18.00 24.32 21.88 19.86 19.18 40.62 17.93 14.14 23.60 22.50 14.71 11.11 11.76 14.89 24.14 20.83 14.81 20.09 24.14 16.39 9.66 15.38 15.05 12.99 24.07 20.00 19.38 17.72 11.54 22.30 11.02 27.78 18.28 12.30 23.33 21.95 4.84 12.77 22.87 18.13 13.88 12.31 K alternative_donor CG17082,I_chr2R_632143_635290,R_chr2R_642176_644740,I_chr2R_644094_644145,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_632192_632274;chr2R_631984_632274;chr2R_632196_632274;chr2R_632143_632274 chr2R_632085_632274 chr2R_632275_632399;chr2R_631970_631983 0.00 NA NA 16.67 NA NA 12.50 0.00 0.00 NA NA 25.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA N alternative_donor R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083458_8089356 chr2L_8083522_8089356 chr2L_8089357_8089736;chr2L_8083444_8083457 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 100.00 NA 100.00 100.00 NA NA NA NA NA NA 90.00 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 K alternative_acceptor Nak chr2L - chr2L_18962792_18962884 chr2L_18962834_18962884 chr2L_18962885_18963115;chr2L_18962646_18962791 85.71 NA NA 87.50 NA NA NA 85.71 85.71 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 71.43 NA NA NA NA NA 62.50 NA 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor I_chr3R_261173_261244,CG14650,RI_chr3R_265878_265942 chr3R + chr3R_265874_265942 chr3R_265878_265942 chr3R_265943_266042;chr3R_265778_265873 1.19 1.15 0.00 0.00 1.67 0.00 2.60 1.23 3.25 0.00 0.00 1.68 0.00 0.00 1.52 0.00 0.00 0.00 1.61 0.00 0.00 1.49 1.83 0.00 0.00 0.00 0.00 1.82 2.82 1.59 4.69 1.92 0.00 1.25 0.00 2.08 2.59 0.00 0.85 1.06 0.00 0.00 1.92 2.44 1.05 1.32 1.19 2.13 2.30 2.13 1.19 1.75 1.32 4.23 2.70 1.14 0.00 0.00 K alternative_donor Nhe1,I_chr2L_105456_106437,I_chr2L_105916_106437 chr2L - chr2L_105456_106437 chr2L_105456_105511 chr2L_105391_105455;chr2L_106438_106537 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 93.33 95.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 96.15 100.00 92.31 91.67 94.74 100.00 94.74 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 92.86 93.33 96.43 K intron_retention CG10737 chr2R + chr2R_15062754_15063752 chr2R_15062753_15062754;chr2R_15063752_15063753 chr2R_15062592_15062753;chr2R_15063753_15063852 97.87 96.97 97.24 96.09 98.15 100.00 94.89 98.65 97.57 97.87 98.97 98.20 99.23 99.17 99.23 96.30 99.17 98.59 99.23 97.49 96.92 92.48 97.47 99.31 98.98 99.31 98.43 94.29 98.81 97.41 99.41 98.90 83.75 96.46 97.22 99.03 97.18 95.90 97.98 98.48 100.00 97.86 97.30 99.34 94.57 99.49 99.32 95.24 97.14 98.29 97.59 96.77 96.55 97.56 99.37 95.92 98.28 96.24 K intron_retention ena chr2R + chr2R_15047541_15047753 chr2R_15047540_15047541;chr2R_15047753_15047754 chr2R_15047496_15047540;chr2R_15047754_15048407 90.70 89.86 83.33 91.67 89.71 88.14 93.10 87.50 88.96 89.74 90.54 96.06 82.35 93.88 91.36 92.31 87.72 84.62 98.28 91.00 85.33 96.34 88.31 89.83 91.30 93.62 93.10 88.46 84.21 86.75 91.80 91.67 91.25 91.45 91.49 90.70 89.31 94.44 87.10 93.79 96.15 91.19 91.11 92.96 94.12 97.50 88.10 84.62 87.50 91.30 84.21 84.38 85.00 87.50 92.68 90.70 88.57 86.67 K intron_retention capt,I_chr2L_1156009_1158078,I_chr2L_1153732_1157370,I_chr2L_1163632_1163759 chr2L - chr2L_1153319_1153385 chr2L_1153318_1153319;chr2L_1153385_1153386 chr2L_1152771_1153318;chr2L_1153386_1153731 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor oho23B,I_chr2L_2856176_2856244,I_chr2L_2856573_2856630,RI_chr2L_2856673_2856772 chr2L + chr2L_2856176_2856218;chr2L_2856176_2856246 chr2L_2856176_2856222 chr2L_2856076_2856175;chr2L_2856247_2856287 0.04 0.05 0.06 0.07 0.00 0.00 0.04 0.06 0.03 0.00 0.03 0.03 0.09 0.03 0.07 0.04 0.04 0.03 0.03 0.02 0.06 0.08 0.04 0.00 0.06 0.03 0.08 0.61 0.00 0.00 0.05 0.00 0.00 0.08 0.11 0.11 0.09 0.04 0.04 0.00 0.00 0.03 0.07 0.07 0.02 0.11 0.12 0.04 0.05 0.09 0.11 0.04 0.06 0.10 0.05 0.10 0.09 0.03 K intron_retention drpr,I_chr3L_1720385_1723579 chr3L - chr3L_1716944_1717002 chr3L_1716943_1716944;chr3L_1717002_1717003 chr3L_1716797_1716943;chr3L_1717003_1717308 0.00 0.32 0.00 0.77 0.00 0.00 0.59 0.00 0.60 0.00 0.00 0.75 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.27 0.67 0.00 0.00 0.00 0.61 0.00 1.52 1.96 6.43 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.70 0.00 0.00 0.46 2.69 0.20 0.00 0.00 0.00 0.00 0.49 0.45 0.94 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 K jcn_only_AD I_chr2R_2754447_2755071,Spn4,CG9454 chr2R - chr2R_2764239_2764449;chr2R_2764239_2764725 chr2R_2764239_2764302 chr2R_2764101_2764238 26.14 NA 15.00 NA NA NA NA 36.00 29.63 26.09 NA NA NA NA NA NA NA NA NA 18.52 NA NA NA 40.00 NA NA NA NA NA NA NA NA NA 42.31 NA NA NA NA NA 26.19 NA 40.91 NA NA 13.79 20.00 NA NA NA NA 18.18 NA NA NA NA NA 30.00 13.79 K mutually_exclusive Myo61F,mtacp1,I_chr3L_1330291_1330865,I_chr3L_1330291_1331279,RI_chr3L_1330929_1331041,l(3)02640 chr3L + chr3L_1330291_1331041,chr3L_1331171_1331279 chr3L_1330291_1330862,chr3L_1330965_1331279 chr3L_1331042_1331170 chr3L_1330863_1330964 chr3L_1330191_1330290;chr3L_1331280_1331379 47.81 46.57 47.98 66.67 46.63 48.88 62.28 52.79 47.94 48.87 53.28 50.75 54.55 45.40 47.84 47.47 44.12 45.41 47.10 49.77 49.35 31.87 48.01 44.30 48.63 51.90 45.82 50.17 68.15 50.71 45.58 45.73 47.07 46.33 49.31 53.53 44.06 45.88 42.71 50.35 55.59 48.29 48.19 38.57 46.43 47.56 42.38 56.53 46.17 47.81 49.02 48.57 39.73 42.38 46.01 44.39 41.33 43.78 K cassette CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157794_157864 chr4 + chr4_153858_155497 chr4_153858_154213;chr4_154340_155497 chr4_154214_154339 chr4_153815_153857;chr4_155498_155561 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 NA NA 100.00 NA NA 87.50 100.00 100.00 100.00 100.00 100.00 90.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 88.89 100.00 NA 100.00 100.00 100.00 NA 100.00 K cassette shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9758417_9759483 chr2R_9758417_9758798;chr2R_9758844_9759483 chr2R_9758799_9758843 chr2R_9758345_9758416;chr2R_9759484_9759658 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.28 100.00 100.00 100.00 98.48 100.00 100.00 100.00 98.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor Pgi,I_chr2R_4801076_4801329 chr2R - chr2R_4801072_4801214;chr2R_4801134_4801214 chr2R_4801076_4801214 chr2R_4801215_4801631;chr2R_4800976_4801071 50.00 45.71 45.65 NA 57.50 44.44 NA 53.12 50.43 50.00 NA NA NA 50.00 44.44 46.15 NA 50.94 NA 53.41 NA 56.06 50.00 50.52 50.72 NA 44.83 53.03 24.14 NA NA 44.44 54.10 50.82 50.79 58.90 50.52 44.93 NA 55.10 53.33 54.87 NA 51.52 54.05 49.21 35.00 51.52 44.78 49.44 45.12 44.23 45.00 43.86 NA 44.44 NA NA K intron_retention Caki chr3R - chr3R_17612828_17612894 chr3R_17612827_17612828;chr3R_17612894_17612895 chr3R_17612652_17612827;chr3R_17612895_17613002 0.00 0.00 0.86 0.70 0.00 0.00 1.60 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 1.45 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG34449,I_chrX_9222628_9227416,RI_chrX_9232665_9233022,RI_chrX_9249209_9250033,RI_chrX_9249212_9250033,RI_chrX_9249212_9250244 chrX - chrX_9227656_9230957 chrX_9227655_9227656;chrX_9230957_9230958 chrX_9227417_9227655;chrX_9230958_9231270 17.95 25.45 22.86 17.50 16.67 24.14 17.65 21.15 23.38 11.84 20.59 25.00 19.35 34.62 16.00 34.48 22.86 17.95 17.65 19.61 15.62 2.08 16.90 11.94 24.14 27.03 15.28 6.85 13.92 12.05 17.78 20.00 5.92 18.52 15.00 8.93 21.35 7.35 10.77 24.73 21.74 22.89 18.52 13.58 16.22 15.94 27.50 8.87 23.94 36.17 13.51 17.50 18.00 25.00 14.58 29.41 24.32 14.77 K intron_retention RI_chr3R_205772_205830,Cont,I_chr3R_207254_207600 chr3R + chr3R_207252_207600 chr3R_207251_207252;chr3R_207600_207601 chr3R_207189_207251;chr3R_207601_207700 6.67 8.70 7.69 12.50 NA 12.50 10.00 21.05 8.20 0.00 NA 9.68 14.29 8.70 8.33 16.67 6.67 9.09 4.76 7.14 0.00 7.69 16.33 6.67 7.41 9.09 13.89 6.67 3.03 7.14 6.67 NA 6.25 0.00 12.50 8.33 0.00 0.00 0.00 2.94 0.00 6.35 0.00 2.82 0.00 0.00 NA 0.00 10.42 0.00 8.70 0.00 NA NA 9.52 6.67 0.00 0.00 K multi_cassette I_chr2L_822032_822857,dock chr2L + chr2L_826508_830737 chr2L_826508_829421;chr2L_829972_830144;chr2L_830350_830737 chr2L_829422_829971;chr2L_830145_830349 chr2L_826008_826507;chr2L_830738_830750 100.00 100.00 100.00 100.00 100.00 94.74 95.24 100.00 97.96 100.00 95.65 100.00 93.33 94.44 96.15 95.45 100.00 95.24 100.00 100.00 100.00 96.00 97.56 100.00 100.00 94.44 100.00 100.00 95.24 100.00 95.24 100.00 100.00 100.00 100.00 95.83 100.00 96.88 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 95.45 100.00 100.00 K jcn_only_AD Pi3K92E,I_chr3R_16459436_16459551,I_chr3R_16459436_16459848 chr3R - chr3R_16459436_16459848;chr3R_16459436_16460340;chr3R_16459436_16460287;chr3R_16459436_16459551 chr3R_16459436_16460267 chr3R_16459336_16459435;chr3R_16460341_16460435 80.77 78.38 87.50 67.61 64.00 75.86 83.61 79.41 83.95 96.15 85.71 76.19 84.38 76.27 81.82 69.33 72.50 72.22 84.09 79.37 87.50 79.31 79.71 93.48 90.32 91.11 76.09 89.29 85.71 75.00 77.55 NA 83.33 79.31 74.29 73.08 85.11 87.50 86.11 88.76 80.00 85.92 83.87 84.72 NA 80.77 69.57 85.29 83.33 NA 80.39 72.73 NA NA 80.39 68.18 84.00 NA N alternative_acceptor HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13164676_13165514;chrX_13164727_13165514 chrX_13164646_13165514 chrX_13165515_13165622;chrX_13164424_13164645 11.69 13.70 9.30 26.32 18.84 17.33 22.83 15.38 11.63 8.16 16.00 11.81 10.29 10.29 17.24 13.33 8.96 16.22 11.43 26.63 15.00 10.00 16.26 7.22 11.69 8.45 13.73 6.12 17.72 13.33 10.34 10.20 9.84 8.87 11.76 9.72 13.01 9.78 17.12 9.27 13.73 7.88 17.65 8.51 8.16 13.51 11.11 10.43 13.41 8.70 11.86 10.00 4.55 5.26 11.88 9.26 17.02 13.24 K intron_retention CG2201 chr2L - chr2L_21616574_21617279 chr2L_21616573_21616574;chr2L_21617279_21617280 chr2L_21616255_21616573;chr2L_21617280_21617432 5.33 3.85 6.67 3.45 0.00 3.45 6.06 3.85 4.30 11.76 9.52 3.51 16.67 6.67 6.82 4.08 7.89 7.41 8.82 3.92 5.71 5.88 3.85 4.76 0.00 6.67 0.00 NA 0.00 5.71 6.06 4.76 6.82 8.20 0.00 0.00 2.38 0.00 0.00 3.51 8.33 5.41 7.14 6.06 7.50 6.67 14.29 4.44 8.54 7.41 5.41 0.00 0.00 4.76 10.00 5.00 5.26 3.28 K alternative_acceptor Xe7,RI_chr3R_1493064_1493414,CRI_chr3R_1493111_1493414 chr3R - chr3R_1493028_1493414 chr3R_1493111_1493414 chr3R_1493415_1493514;chr3R_1493011_1493027 22.48 22.22 18.18 40.62 17.65 27.27 26.67 28.57 26.67 33.33 17.65 29.03 47.06 41.18 25.00 25.64 20.00 21.43 25.00 28.89 27.78 22.22 16.67 11.76 NA 17.39 23.08 14.29 10.53 28.57 26.09 6.67 22.73 26.67 20.00 28.57 15.38 5.88 14.29 16.22 10.00 29.03 22.22 23.53 11.76 16.00 20.00 28.12 21.05 22.73 21.43 30.77 17.39 23.81 26.32 16.67 22.73 16.22 K jcn_only_AA Ptp99A,I_chr3R_25302126_25302175 chr3R + chr3R_25309466_25310173 chr3R_25309466_25309678 chr3R_25309191_25309465;chr3R_25310174_25310193 92.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 92.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette SPoCk,I_chr3L_22776339_22776519,I_chr3L_22777865_22778359 chr3L + chr3L_22766852_22770210;chr3L_22766817_22770210 chr3L_22766817_22767837,chr3L_22766852_22767837;chr3L_22768238_22770210 chr3L_22767838_22768237 chr3L_22766783_22766816;chr3L_22770211_22771924 50.82 59.46 56.41 37.70 43.24 53.12 60.00 37.70 51.76 56.52 46.67 75.00 42.86 50.00 52.17 53.19 54.84 29.17 45.71 90.00 59.09 46.15 45.71 43.14 40.54 60.00 58.49 40.62 71.79 42.50 55.00 64.29 44.12 50.82 50.00 81.58 45.90 40.00 50.00 60.00 62.50 47.62 52.78 42.11 50.00 58.14 44.00 60.00 52.24 34.48 60.00 50.00 52.17 47.06 39.58 52.00 38.10 57.14 K intron_retention Polycomblike chr2R + chr2R_14025149_14025203 chr2R_14025148_14025149;chr2R_14025203_14025204 chr2R_14024976_14025148;chr2R_14025204_14026278 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.52 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 K jcn_only_AD CG17471,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1217104_1217333;chr4_1217104_1217302;chr4_1217104_1217383 chr4_1217104_1217473 chr4_1217009_1217103;chr4_1217474_1217480 0.00 NA NA NA NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor casp,EI_chr2R_11914764_11914841 chr2R - chr2R_11914784_11914841;chr2R_11914769_11914841 chr2R_11914764_11914841 chr2R_11914842_11914941;chr2R_11914664_11914763 2.63 0.00 0.00 2.63 0.00 0.00 2.63 0.00 2.00 4.76 5.00 2.38 4.17 0.00 0.00 0.00 4.76 3.85 5.26 2.22 0.00 3.64 3.03 0.00 0.00 0.00 3.12 0.00 3.57 3.12 11.43 9.09 2.94 0.00 4.55 4.76 3.33 3.57 3.85 2.08 2.94 1.96 5.88 6.06 0.00 3.03 4.76 13.21 2.38 0.00 0.00 6.25 0.00 7.14 0.00 4.35 0.00 0.00 K cassette noncoding_5243,I_chr2R_4553376_4563976,l(2)44DEa,I_chr2R_4553577_4562151,I_chr2R_4553817_4565934,I_chr2R_4554300_4563976,I_chr2R_4565692_4565934 chr2R + chr2R_4553376_4563976;chr2R_4553817_4562151;chr2R_4553577_4562151;chr2R_4553817_4563976;chr2R_4553376_4562151 chr2R_4553817_4554272,chr2R_4553376_4554272,chr2R_4553577_4554272;chr2R_4554300_4562151,chr2R_4554300_4563976 chr2R_4554273_4554299 chr2R_4553371_4553375;chr2R_4563977_4564076 9.38 7.69 9.21 6.84 11.76 8.47 14.05 9.09 9.09 14.29 9.38 4.86 9.80 7.23 6.56 5.61 10.45 6.38 7.14 12.26 9.09 7.32 15.00 17.65 9.68 7.50 13.04 8.70 14.71 9.38 4.88 6.67 8.82 8.72 4.00 11.32 17.39 22.22 16.00 11.94 11.11 11.38 5.88 17.95 21.43 6.67 14.81 6.06 9.52 19.05 14.29 8.33 4.35 15.79 11.36 19.05 15.00 3.03 K intron_retention CG5746 chr3R - chr3R_20172483_20172538 chr3R_20172482_20172483;chr3R_20172538_20172539 chr3R_20172414_20172482;chr3R_20172539_20172607 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.74 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RI_chr3R_205772_205830,Cont,I_chr3R_207254_207600 chr3R + chr3R_208540_208591 chr3R_208539_208540;chr3R_208591_208592 chr3R_207601_208539;chr3R_208592_210277 0.00 0.00 0.00 3.57 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 3.45 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 K intron_retention RI_chrX_18544139_18544185,Ing3 chrX - chrX_18546821_18546896 chrX_18546820_18546821;chrX_18546896_18546897 chrX_18544717_18546820;chrX_18546897_18547079 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.04 6.67 15.38 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.85 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr2R_17169674_17170491,CG10069,I_chr2R_17169897_17170495,I_chr2R_17170432_17170491,I_chr2R_17171765_17171886 chr2R + chr2R_17170070_17170491 chr2R_17170069_17170070;chr2R_17170491_17170492 chr2R_17170059_17170069;chr2R_17170492_17170591 19.52 NA NA NA NA NA 22.22 19.05 NA NA NA 20.00 NA NA NA NA NA NA NA 13.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG3534,I_chr3R_12822371_12823186 chr3R + chr3R_12822371_12822774 chr3R_12822370_12822371;chr3R_12822774_12822775 chr3R_12822271_12822370;chr3R_12822775_12822896 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 2.86 0.00 0.00 0.00 K alternative_donor CG4699 chr3R + chr3R_11619752_11620550;chr3R_11619772_11620550;chr3R_11619570_11620550;chr3R_11619676_11620550 chr3R_11619776_11620550 chr3R_11620551_11621301;chr3R_11619539_11619569 18.52 33.33 16.00 14.29 33.33 11.11 25.00 11.90 24.44 40.00 26.32 11.11 13.64 22.73 17.24 6.12 21.05 15.38 14.81 16.33 22.22 21.74 18.18 19.05 26.67 9.68 21.43 25.00 14.29 27.78 6.06 0.00 35.71 17.50 10.53 18.75 21.05 14.29 18.75 24.00 33.33 15.38 15.38 17.65 22.22 35.71 7.14 22.22 13.73 38.46 18.52 15.79 10.00 42.86 17.39 27.27 33.33 16.67 K alternative_acceptor CG13747 chr2R + chr2R_4906154_4906220 chr2R_4906154_4906206 chr2R_4906003_4906153;chr2R_4906221_4906517 100.00 NA NA 100.00 NA NA 100.00 100.00 94.44 NA NA 87.50 NA NA NA NA NA NA 100.00 88.89 NA 100.00 NA 85.71 NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA 90.91 NA 100.00 NA 93.33 NA 85.71 100.00 NA 90.00 100.00 90.91 NA 100.00 NA NA 100.00 93.33 90.91 K intron_retention CG5522 chr2R + chr2R_12677141_12677216 chr2R_12677140_12677141;chr2R_12677216_12677217 chr2R_12676689_12677140;chr2R_12677217_12677420 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 1.12 1.69 1.64 0.00 0.00 0.00 0.00 0.00 0.00 1.54 1.37 0.00 0.00 1.70 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD scra,EI_chr2R_3480349_3480405 chr2R + chr2R_3480833_3480922 chr2R_3480866_3480922 chr2R_3480923_3481286;chr2R_3480644_3480832 99.57 99.57 100.00 100.00 100.00 99.25 100.00 99.58 100.00 99.11 99.33 99.71 100.00 100.00 99.45 100.00 99.35 100.00 98.73 99.57 98.59 100.00 100.00 100.00 98.73 99.35 100.00 100.00 99.29 99.46 99.09 99.22 99.25 99.26 100.00 100.00 99.06 100.00 99.40 99.15 97.65 99.73 99.22 98.92 99.50 100.00 99.07 100.00 99.69 99.12 100.00 99.39 100.00 100.00 98.84 98.58 99.34 100.00 K intron_retention Gprk2 chr3R + chr3R_27259611_27279032 chr3R_27259610_27259611;chr3R_27279032_27279033 chr3R_27259181_27259610;chr3R_27279033_27279128 18.09 20.00 18.52 11.63 NA 21.43 36.84 30.43 35.71 14.29 8.33 20.83 36.00 31.25 20.69 25.93 23.81 8.33 18.52 15.09 14.29 5.41 19.05 16.67 NA 20.00 17.24 NA 10.53 6.06 31.03 NA 3.85 22.73 29.41 9.68 9.09 17.65 17.65 22.86 33.33 17.39 31.58 9.30 NA 10.53 0.00 16.28 31.82 NA 21.74 25.00 0.00 NA 24.00 14.29 11.76 13.04 K alternative_donor l(2)tid chr2R + chr2R_19595998_19596152 chr2R_19596011_19596152 chr2R_19596153_19596758;chr2R_19594625_19595997 64.52 63.27 60.00 66.67 72.00 55.88 60.71 45.71 63.24 60.00 73.33 66.13 80.00 69.57 70.27 55.56 65.00 57.89 54.55 65.15 63.64 65.91 54.10 62.30 71.88 67.86 64.71 70.73 64.52 69.77 65.38 52.83 62.50 66.67 66.67 68.57 58.24 56.52 63.93 77.97 66.67 64.86 81.82 62.96 53.41 66.67 65.28 62.12 59.26 71.43 61.22 56.67 57.14 55.00 65.52 67.80 58.16 46.25 K intron_retention Rph,I_chrX_10644396_10644958,I_chrX_10647710_10648325,RI_chrX_10649048_10651427 chrX - chrX_10644128_10644188 chrX_10644127_10644128;chrX_10644188_10644189 chrX_10643136_10644127;chrX_10644189_10644395 0.00 1.92 0.00 2.94 0.00 0.00 1.61 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 3.17 8.11 0.00 0.00 0.00 1.67 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 2.70 2.54 0.00 2.38 0.00 0.00 0.00 0.00 3.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3L_1494947_1496080,pUf68,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1501407_1501798 chr3L_1501406_1501407;chr3L_1501798_1501799 chr3L_1501351_1501406;chr3L_1501799_1501892 35.71 NA NA NA NA NA NA 41.18 40.00 NA NA 42.11 35.71 NA 69.23 NA NA NA 46.15 54.55 25.00 NA 35.29 NA NA NA NA NA NA NA 21.05 NA NA 50.00 NA NA NA NA NA 20.00 30.77 35.00 NA 23.08 NA 23.08 NA 21.43 55.56 NA 40.00 NA NA NA NA NA NA NA K alternative_donor CG14872,REI_chr3R_11334285_11334336 chr3R - chr3R_11334285_11334385 chr3R_11334285_11334336 chr3R_11334185_11334284;chr3R_11334386_11334436 12.12 13.33 14.00 9.80 16.67 10.00 26.23 12.82 12.30 3.85 14.71 18.57 12.50 11.63 9.26 12.68 17.95 10.91 10.00 14.44 12.90 6.85 8.24 11.29 2.63 10.00 4.82 7.55 12.12 11.43 13.79 8.62 10.53 18.18 10.00 16.39 9.09 9.80 9.76 12.79 5.94 15.91 17.65 12.50 12.99 6.87 13.51 6.74 13.98 16.33 13.19 7.69 14.00 17.65 10.00 11.90 9.30 12.40 K jcn_only_AA Nop60B,AT25722,F_chr2R_20073291_20073744,snoRNA:Or-CD9a,snmRNA:60Ca chr2R + chr2R_20073291_20073744 chr2R_20073291_20073510 chr2R_20073238_20073290;chr2R_20073745_20073751 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 95.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 100.00 K alternative_acceptor spn-F chr3R + chr3R_27081692_27081759 chr3R_27081692_27081756 chr3R_27080864_27081691;chr3R_27081760_27082388 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette trol,I_chrX_2384846_2385177,I_chrX_2387249_2389980,I_chrX_2391522_2395659 chrX - chrX_2384876_2385351 chrX_2384876_2385177;chrX_2385268_2385351 chrX_2385178_2385267 chrX_2384489_2384875;chrX_2385352_2385445 0.00 0.00 0.00 1.64 0.00 0.00 2.04 0.00 0.61 2.44 2.50 0.00 0.00 0.00 1.54 1.85 0.00 16.67 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 1.69 4.55 10.26 0.00 1.72 0.00 0.88 0.00 0.00 1.45 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 N intron_retention RpL13A,I_chr3R_1450243_1451235,EI_chr3R_1450853_1451054,snoRNA:Me28S-U2134b,snoRNA:Me28S-U2134a chr3R + chr3R_1450853_1451134 chr3R_1450852_1450853;chr3R_1451134_1451135 chr3R_1450753_1450852;chr3R_1451135_1451154 100.00 NA NA NA NA NA 42.86 NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA 31.58 NA 100.00 NA 25.00 NA 100.00 100.00 NA NA NA NA NA NA 100.00 NA NA NA 100.00 29.03 100.00 NA NA NA NA NA 46.15 NA NA NA NA NA 100.00 NA NA NA 100.00 K jcn_only_AA CG12030 chr3L + chr3L_649052_649178 chr3L_649052_649125 chr3L_648517_649051;chr3L_649179_649419 0.00 0.00 0.09 0.00 0.00 0.10 0.08 0.05 0.00 0.20 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD gro chr3R + chr3R_21868657_21868716;chr3R_21868626_21868716 chr3R_21868622_21868716 chr3R_21868717_21869101;chr3R_21868588_21868621 39.13 NA NA NA NA NA NA NA 39.13 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 45.00 NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA Hml chr3L + chr3L_13840287_13840350 chr3L_13840287_13840347 chr3L_13840122_13840286;chr3L_13840351_13840740 84.00 84.00 NA 88.68 NA 84.00 90.48 78.79 85.37 NA 96.43 83.61 82.50 66.67 90.32 77.42 95.00 81.82 85.71 89.13 80.00 NA 76.92 NA NA 90.00 93.75 NA NA NA NA NA NA 86.00 NA NA 83.33 NA NA 83.64 NA 82.61 85.29 76.67 NA NA NA 88.24 85.42 NA NA NA NA NA 75.00 NA NA 77.27 K jcn_only_AD RpL27A,E_chr2L_4457411_4457977,I_chr2L_4457510_4457892,snoRNA:Me18S-C1831,I_chr2L_4458058_4458120 chr2L - chr2L_4457510_4457892 chr2L_4457510_4457739 chr2L_4457412_4457509;chr2L_4457893_4457992 99.99 100.00 100.00 99.95 100.00 100.00 99.99 99.99 99.99 100.00 100.00 99.99 99.97 100.00 100.00 99.97 99.99 100.00 100.00 99.99 99.99 99.55 99.99 100.00 99.97 99.96 99.99 100.00 99.98 100.00 100.00 99.99 100.00 99.99 99.99 99.99 100.00 100.00 99.98 99.99 100.00 100.00 99.98 100.00 99.99 100.00 99.99 99.99 99.98 100.00 99.99 100.00 100.00 99.99 100.00 100.00 100.00 100.00 K jcn_only_AD CG11486,RE_chr3L_3084894_3085203 chr3L + chr3L_3071298_3073080;chr3L_3071308_3073080 chr3L_3071190_3073080 chr3L_3073081_3073149;chr3L_3071183_3071189 76.19 NA NA NA NA NA NA 57.69 NA NA NA 59.09 NA NA NA 86.49 NA NA NA 92.31 NA NA NA NA NA NA NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA 76.19 NA NA NA NA NA NA 85.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA rdgA chrX + chrX_8910362_8911876;chrX_8910362_8911894 chrX_8910362_8911891 chrX_8910158_8910361;chrX_8911895_8912021 4.17 NA NA NA NA 0.00 NA NA 6.00 NA NA 8.70 NA NA NA NA NA NA NA 3.33 NA 4.76 5.00 NA NA NA NA NA NA NA NA NA NA 3.45 NA NA 0.00 NA 11.11 NA NA 19.23 NA NA NA NA NA NA 3.57 NA NA NA NA NA 3.33 NA NA NA K jcn_only_AA E_chr3R_20923460_20923586,CG33096,CG33095 chr3R + chr3R_20923441_20923586 chr3R_20923441_20923556 chr3R_20923364_20923440;chr3R_20923587_20923686 100.00 NA NA NA NA NA NA 95.83 NA NA NA NA NA NA NA 100.00 NA NA NA 96.15 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG4272 chr2L + chr2L_2365729_2366274;chr2L_2365902_2366274 chr2L_2365391_2366274 chr2L_2366275_2368213;chr2L_2365332_2365390 0.00 3.85 NA 0.00 0.00 NA 0.00 0.00 3.57 0.00 0.00 5.41 3.57 0.00 0.00 0.00 0.00 4.76 3.23 0.00 NA 4.17 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA 3.57 0.00 0.00 4.76 0.00 3.33 0.00 0.00 NA 0.00 0.00 2.94 NA NA NA 0.00 3.23 4.00 4.76 0.00 NA NA 3.85 NA NA NA K intron_retention CG32027 chr3L + chr3L_18835367_18835445 chr3L_18835366_18835367;chr3L_18835445_18835446 chr3L_18835317_18835366;chr3L_18835446_18835505 53.33 NA NA 60.00 NA NA 75.00 61.11 47.37 NA NA 66.67 30.77 NA NA 47.06 NA NA 70.00 61.11 NA NA 50.00 NA NA 54.55 88.89 NA NA NA 41.67 NA NA 53.33 NA 45.45 NA NA 21.43 35.71 60.00 47.06 87.50 NA NA 41.67 NA 53.33 45.45 35.71 71.43 NA NA NA 46.67 NA NA 61.54 K intron_retention I_chr3L_212783_212843,Kaz1-ORFB,Kaz1-ORFA_Kaz1-ORFB,CG13877 chr3L + chr3L_218196_218282 chr3L_218195_218196;chr3L_218282_218283 chr3L_218127_218195;chr3L_218283_218658 5.88 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 11.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG5872,RI_chr3L_20430213_20430346,RI_chr3L_20430213_20430358 chr3L + chr3L_20430213_20430353;chr3L_20430213_20430346 chr3L_20430213_20430358 chr3L_20430113_20430212;chr3L_20430359_20430446 7.14 NA NA NA NA NA NA NA 4.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 9.52 NA NA NA NA NA NA NA NA 4.76 NA NA NA 9.52 NA 12.82 4.76 NA NA NA NA NA NA NA NA 19.51 K intron_retention I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17183481_17200781,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,I_chr3R_17197790_17197863,RI_chr3R_17198778_17199052,RI_chr3R_17198803_17199019,RI_chr3R_17198803_17199052 chr3R - chr3R_17190715_17200781 chr3R_17190714_17190715;chr3R_17200781_17200782 chr3R_17190579_17190714;chr3R_17200782_17200881 0.00 0.00 0.00 0.00 NA NA NA 12.50 0.00 NA NA 11.54 14.29 NA NA 4.76 NA 0.00 NA 1.96 NA 0.00 0.00 7.41 0.00 NA 0.00 0.00 7.69 0.00 NA 0.00 0.00 0.00 10.53 0.00 0.00 0.00 2.70 2.13 3.12 8.82 NA NA 0.00 0.00 6.06 4.76 12.00 0.00 0.00 7.69 0.00 0.00 NA 0.00 0.00 0.00 K jcn_only_AA CG9205,RI_chr3L_1035462_1035545 chr3L + chr3L_1035462_1035559 chr3L_1035462_1035545 chr3L_1035393_1035461;chr3L_1035560_1035628 0.41 0.29 0.62 0.51 0.00 0.62 0.00 0.48 0.18 0.00 0.00 0.19 0.00 0.41 0.49 1.07 0.00 0.35 0.00 0.00 0.00 0.00 0.67 0.80 0.52 0.00 0.88 0.43 0.49 0.00 2.28 0.00 0.43 0.49 0.47 0.00 0.33 0.61 0.21 0.45 0.55 0.00 0.41 0.69 0.85 1.14 0.32 0.43 0.24 0.69 0.00 0.65 0.00 0.00 0.00 0.35 0.61 0.63 N alternative_acceptor cbs,I_chr2R_9340512_9340593 chr2R + chr2R_9339532_9339826 chr2R_9339532_9339794 chr2R_9339433_9339531;chr2R_9339827_9340240 10.81 4.00 5.00 13.79 16.67 7.14 7.41 14.71 9.80 NA 0.00 10.81 17.65 6.90 5.56 13.79 17.65 11.11 16.67 14.29 10.53 33.33 21.43 16.67 18.75 10.53 8.11 NA NA 14.29 7.41 15.38 21.74 10.81 11.76 NA 5.56 NA 17.65 10.00 10.00 10.53 5.56 9.09 41.67 10.71 20.00 4.35 8.11 12.50 16.00 12.50 NA 5.56 8.33 9.52 16.67 0.00 K cassette coro,I_chr2R_2752880_2760038,I_chr2R_2753390_2754191,I_chr2R_2754447_2754986,I_chr2R_2754447_2755071 chr2R - chr2R_2752880_2760038 chr2R_2752880_2754191;chr2R_2754447_2760038 chr2R_2754192_2754446 chr2R_2752780_2752879;chr2R_2760039_2760138 99.51 100.00 99.27 94.07 100.00 100.00 99.25 99.33 100.00 99.04 98.82 100.00 100.00 100.00 99.24 100.00 98.84 100.00 99.08 99.65 100.00 97.42 99.62 99.51 97.89 98.40 99.50 99.29 99.45 100.00 100.00 100.00 100.00 99.41 100.00 99.45 99.64 99.45 99.64 99.36 96.88 99.59 98.81 99.46 100.00 99.01 99.30 99.64 99.51 99.23 99.49 100.00 100.00 100.00 100.00 99.24 99.18 100.00 K intron_retention Syb chr2R - chr2R_6138650_6139432 chr2R_6138649_6138650;chr2R_6139432_6139433 chr2R_6138448_6138649;chr2R_6139433_6139489 20.32 18.82 19.15 21.60 24.39 17.38 22.82 18.90 21.71 24.74 21.11 18.79 20.16 15.58 19.40 19.35 18.82 21.26 20.00 20.40 20.32 25.25 18.94 22.06 18.52 19.94 32.16 38.85 29.26 25.35 17.06 19.70 25.76 18.09 15.75 14.43 25.64 21.55 21.24 27.29 24.63 21.68 17.86 28.07 26.82 21.77 20.00 32.02 17.04 20.00 19.95 23.98 19.39 15.44 18.20 18.14 22.43 27.36 K alternative_donor CG32803,I_chrX_1795047_1795115,RI_chrX_1795648_1795745,I_chrX_1798310_1798525,I_chrX_1798315_1798577 chrX - chrX_1795047_1795115 chrX_1795047_1795097 chrX_1794947_1795046;chrX_1795116_1795215 96.67 100.00 100.00 100.00 100.00 100.00 90.91 93.75 95.45 100.00 94.12 96.08 100.00 100.00 96.67 100.00 100.00 96.00 95.65 100.00 95.83 90.00 97.67 96.67 94.44 92.86 96.88 100.00 82.61 96.30 100.00 100.00 100.00 97.73 95.24 95.24 91.18 100.00 97.06 94.29 94.74 97.96 84.21 96.97 100.00 92.00 92.45 92.31 95.56 97.22 96.43 94.12 91.30 97.44 97.06 97.14 100.00 94.12 K intron_retention CREF_chr3R_5589662_5589762,RpS29,CG12947,CG8500 chr3R + chr3R_5607950_5608007 chr3R_5607949_5607950;chr3R_5608007_5608008 chr3R_5607419_5607949;chr3R_5608008_5608202 0.00 0.00 NA 21.74 NA NA NA NA 0.00 NA NA NA NA NA NA 8.70 NA NA NA 0.00 NA 5.71 10.00 NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 7.14 0.00 12.50 0.00 NA NA 0.00 0.00 NA 10.53 14.29 0.00 0.00 NA NA NA NA 5.56 0.00 0.00 K intron_retention cact,RI_chr2L_16314859_16315116,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16325055_16325493 chr2L_16325054_16325055;chr2L_16325493_16325494 chr2L_16324333_16325054;chr2L_16325494_16325583 0.75 0.00 0.00 2.44 0.00 0.00 3.39 1.96 2.11 0.00 0.00 2.14 0.00 0.00 1.33 2.40 2.56 0.00 0.00 4.23 0.00 7.00 2.22 1.75 0.00 2.94 0.00 3.08 4.00 0.00 0.00 0.00 2.13 2.46 0.00 0.00 1.96 0.00 0.00 0.00 0.00 2.60 6.78 1.01 1.82 0.00 2.35 1.03 0.75 2.70 0.00 0.00 1.37 3.08 2.20 0.00 0.00 0.00 K cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27707594_27784756;chr3R_27707594_27757793 chr3R_27707594_27747354;chr3R_27747397_27757793,chr3R_27747397_27784756 chr3R_27747355_27747396 chr3R_27707494_27707593;chr3R_27784757_27784846 4.35 NA NA 12.00 4.17 NA 4.35 5.56 4.88 14.29 0.00 5.41 0.00 4.17 3.23 0.00 NA 0.00 4.76 5.71 0.00 7.14 8.33 0.00 6.67 0.00 0.00 NA 15.38 7.69 0.00 NA 4.55 0.00 NA 0.00 5.26 0.00 5.56 3.45 NA 2.63 NA 6.06 NA 6.67 4.76 0.00 2.70 5.00 5.88 0.00 NA NA 0.00 7.69 0.00 12.00 K alternative_acceptor RPA2,RI_chr2L_20925851_20925909 chr2L - chr2L_20925844_20925909 chr2L_20925851_20925909 chr2L_20925910_20925975;chr2L_20925751_20925843 100.00 100.00 94.74 100.00 100.00 100.00 90.00 95.65 100.00 100.00 100.00 94.12 100.00 NA 100.00 100.00 100.00 NA 100.00 96.67 100.00 95.24 96.77 100.00 100.00 100.00 95.45 100.00 95.45 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 94.44 100.00 97.78 K intron_retention CG4936 chr3R + chr3R_15859349_15859763 chr3R_15859348_15859349;chr3R_15859763_15859764 chr3R_15859238_15859348;chr3R_15859764_15860082 6.19 2.50 6.67 12.33 5.77 5.77 6.25 7.06 6.47 0.00 4.92 7.61 5.00 0.00 6.06 6.33 3.64 6.45 6.45 3.65 0.00 8.20 9.17 5.50 8.33 7.14 10.31 8.06 3.03 5.88 4.44 8.47 6.67 6.49 5.77 4.62 4.69 6.36 3.60 4.59 2.50 4.27 5.71 8.57 3.60 6.67 5.06 5.36 8.57 8.57 6.19 5.36 7.25 2.22 7.46 6.31 8.76 7.41 K intron_retention glob1 chr3R - chr3R_11723432_11723496 chr3R_11723431_11723432;chr3R_11723496_11723497 chr3R_11723270_11723431;chr3R_11723497_11723737 0.00 0.00 0.00 0.00 2.56 0.00 0.00 1.08 0.00 0.00 0.00 1.09 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 2.70 0.00 0.00 1.19 0.00 1.14 2.86 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 K intron_retention Moe,I_chrX_8774434_8791759 chrX - chrX_8785657_8792216 chrX_8785656_8785657;chrX_8792216_8792217 chrX_8785595_8785656;chrX_8792217_8792259 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.79 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette eIF-4E,RI_chr3L_9394049_9394139,RI_chr3L_9394054_9394756,I_chr3L_9394308_9394756,RI_chr3L_9394468_9394631,I_chr3L_9394468_9394659,I_chr3L_9394468_9395155,I_chr3L_9394468_9395240,I_chr3L_9394468_9395446,I_chr3L_9394819_9395198,I_chr3L_9394819_9395379 chr3L - chr3L_9394054_9395379 chr3L_9394054_9394139;chr3L_9394468_9395379 chr3L_9394140_9394467 chr3L_9393954_9394053;chr3L_9395380_9395409 85.04 80.32 85.65 70.77 85.47 86.29 86.72 84.57 87.42 80.39 93.40 86.13 89.50 86.43 81.78 88.81 86.90 84.34 92.24 84.21 88.72 94.61 78.93 79.26 69.41 80.49 74.90 66.81 82.87 87.34 88.15 87.38 91.19 85.45 79.56 77.87 82.01 81.91 82.25 89.07 85.31 86.36 82.54 90.52 88.49 88.11 77.85 89.71 84.82 78.33 80.99 82.91 79.67 73.95 88.17 76.74 85.04 89.36 K intron_retention I_chrX_1798310_1798525,eIF2B-epsilon chrX - chrX_1816701_1816763 chrX_1816700_1816701;chrX_1816763_1816764 chrX_1816576_1816700;chrX_1816764_1816960 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 6.25 2.22 0.00 2.97 0.00 0.00 0.00 0.00 0.00 0.47 0.00 1.58 1.40 0.75 0.00 0.00 0.93 0.00 0.00 0.74 0.41 1.13 0.00 0.00 0.00 0.00 0.00 0.00 1.40 0.00 0.00 K intron_retention CG10428 chr2L + chr2L_18949373_18949428 chr2L_18949372_18949373;chr2L_18949428_18949429 chr2L_18949203_18949372;chr2L_18949429_18949894 1.61 NA 0.00 5.26 NA 0.00 4.55 7.14 14.29 NA 14.29 3.85 0.00 0.00 0.00 0.00 NA NA 0.00 4.35 NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA 3.23 NA NA NA NA NA NA NA 5.71 NA NA NA NA NA NA 6.67 NA NA NA NA NA 0.00 NA NA NA K intron_retention CG18854,RI_chr2L_9789598_9789790,I_chr2L_9789694_9789790,REI_chr2L_9789718_9789790,I_chr2L_9790307_9790615,I_chr2L_9790310_9790556 chr2L - chr2L_9789616_9789674 chr2L_9789615_9789616;chr2L_9789674_9789675 chr2L_9789594_9789615;chr2L_9789675_9789693 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 3.12 0.00 0.00 0.00 0.00 0.00 0.68 1.14 0.00 0.00 0.00 0.00 0.00 1.15 K intron_retention synj,I_chr2R_17968269_17968579 chr2R + chr2R_17972430_17972496 chr2R_17972429_17972430;chr2R_17972496_17972497 chr2R_17970210_17972429;chr2R_17972497_17973112 23.08 17.86 23.26 36.67 18.92 17.39 28.00 29.85 20.00 32.00 31.03 21.33 16.13 35.00 31.82 31.25 24.24 19.44 26.83 23.08 26.67 5.49 25.33 19.48 23.40 43.59 43.33 43.28 51.85 21.74 25.53 32.43 20.83 16.92 21.57 24.44 11.24 12.24 15.29 17.39 42.86 24.18 27.50 12.50 24.19 37.74 12.90 45.24 19.48 16.90 18.33 20.00 19.30 21.74 22.64 15.49 15.46 35.19 K alternative_donor Eip71CD chr3L + chr3L_15505454_15505575 chr3L_15505466_15505575 chr3L_15505576_15505836;chr3L_15505274_15505453 57.89 55.17 57.14 69.23 68.75 83.33 57.14 64.52 50.00 50.00 78.57 51.43 60.00 60.00 73.91 59.38 73.33 53.33 57.14 51.92 68.42 45.45 61.36 45.95 45.45 47.06 58.62 71.43 53.33 58.82 68.18 50.00 46.67 64.52 60.00 56.00 50.00 60.00 50.00 58.33 57.89 48.98 63.64 54.72 58.06 59.09 56.10 52.17 44.74 70.83 52.38 58.06 53.33 51.52 51.72 62.00 58.49 62.50 K intron_retention CE_chrX_20766225_20927825,CG1532,I_chrX_20898872_20898925,RI_chrX_20902550_20902613 chrX - chrX_20898872_20898929 chrX_20898871_20898872;chrX_20898929_20898930 chrX_20898772_20898871;chrX_20898930_20898979 2.44 3.57 2.08 1.08 0.00 2.53 2.44 4.20 4.88 3.33 0.00 2.40 0.00 1.82 5.21 3.12 4.84 2.90 3.37 2.58 1.54 0.00 1.56 1.23 0.00 5.63 3.23 10.00 3.12 0.00 4.55 0.00 3.15 1.77 0.00 1.92 3.64 3.77 0.00 6.74 3.28 2.67 3.28 3.45 1.83 0.00 8.00 0.00 2.14 0.00 3.28 5.71 0.00 2.38 0.00 0.00 3.85 1.29 K intron_retention CG8449,RI_chr3R_9096632_9096844 chr3R - chr3R_9096632_9096690 chr3R_9096631_9096632;chr3R_9096690_9096691 chr3R_9096532_9096631;chr3R_9096691_9096787 21.43 24.00 NA 38.46 NA 14.29 33.33 5.00 15.62 NA 33.33 16.67 NA 21.43 6.67 22.22 NA NA 20.00 25.93 NA 35.00 26.92 22.22 36.84 36.36 22.22 NA 39.13 12.50 50.00 NA 14.29 21.05 17.65 56.25 22.45 19.05 22.22 16.13 22.22 20.00 7.14 26.92 13.04 35.71 13.79 19.05 16.67 19.05 18.42 28.57 13.64 25.00 20.00 31.82 15.38 NA K alternative_acceptor EDTP chr2R - chr2R_13320840_13320924;chr2R_13320861_13320924 chr2R_13320873_13320924 chr2R_13320925_13321563;chr2R_13320696_13320839 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K jcn_only_AA CG7546 chr3L + chr3L_7509151_7509218 chr3L_7509151_7509215 chr3L_7508971_7509150;chr3L_7509219_7509646 97.67 97.08 98.96 97.74 95.35 98.82 96.53 96.38 96.34 98.41 98.00 97.96 97.67 97.26 96.26 100.00 94.81 97.00 97.10 98.12 98.70 97.73 97.66 98.86 97.25 100.00 97.65 100.00 97.78 100.00 96.91 98.11 96.18 95.28 92.77 100.00 98.39 97.60 97.07 97.17 95.45 98.06 96.88 100.00 98.16 97.47 100.00 97.03 96.47 98.52 97.95 94.38 98.17 98.25 94.81 99.24 99.29 97.06 K intron_retention CG14814,I_chrX_1757755_1757801 chrX - chrX_1759656_1759721 chrX_1759655_1759656;chrX_1759721_1759722 chrX_1758203_1759655;chrX_1759722_1759831 47.06 47.06 53.85 69.23 41.67 41.67 NA 52.38 37.50 NA NA 39.13 NA 77.78 47.06 30.43 54.55 NA NA 43.48 NA 60.00 40.00 40.00 NA NA 66.67 NA NA NA 28.57 NA 53.85 57.14 53.33 69.23 34.62 36.36 17.65 25.00 NA 53.85 66.67 NA NA 30.77 36.36 50.00 70.59 NA 56.25 NA NA NA 66.67 NA NA 46.15 K alternative_acceptor Eph,I_chr4_639690_640473,I_chr4_640410_640485,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_640410_640485 chr4_640410_640473 chr4_640310_640409;chr4_640486_640573 100.00 100.00 100.00 97.22 93.75 94.44 100.00 97.56 97.37 100.00 94.44 97.50 100.00 100.00 95.00 100.00 100.00 100.00 96.30 97.56 100.00 100.00 100.00 95.00 100.00 94.74 94.74 NA 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 95.45 100.00 97.87 92.86 97.56 97.44 100.00 100.00 94.44 100.00 100.00 100.00 95.45 100.00 97.50 K alternative_donor CG15609,C_chr2R_12899322_12900789,I_chr2R_12902708_12903184 chr2R - chr2R_12902708_12903184;chr2R_12902708_12903198;chr2R_12902708_12903167 chr2R_12902708_12903163 chr2R_12902608_12902707;chr2R_12903199_12903284 41.67 29.41 50.00 46.88 42.86 47.06 50.00 51.35 44.74 45.45 37.50 44.44 40.91 55.56 31.25 37.50 46.67 46.15 40.00 32.35 54.55 57.14 33.33 53.33 64.29 33.33 17.39 42.86 40.00 31.25 44.00 33.33 37.50 37.14 45.00 20.83 41.67 46.67 38.46 31.03 33.33 37.14 40.00 52.17 50.00 57.14 33.33 38.89 41.18 50.00 50.00 58.33 22.22 45.45 33.33 41.67 50.00 30.00 K intron_retention Ac3,I_chr2L_21635211_21637957,I_chr2L_21643253_21646594 chr2L + chr2L_21641014_21641072 chr2L_21641013_21641014;chr2L_21641072_21641073 chr2L_21640730_21641013;chr2L_21641073_21641079 2.78 NA NA NA NA NA NA NA 9.52 NA NA 6.25 NA NA NA 5.88 NA NA NA 10.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 5.56 NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20827154_20827496 chr2L_20827158_20827496 chr2L_20827497_20827676;chr2L_20827119_20827153 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.79 99.88 100.00 100.00 100.00 100.00 100.00 99.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.64 100.00 100.00 100.00 99.76 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.80 99.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_last_exon RI_chr3R_19759126_19759198,Gdh,E_chr3R_19762765_19768309 chr3R - chr3R_19762368_19763144 chr3R_19762742_19763144 chr3R_19759199_19762367 chr3R_19762673_19762741 chr3R_19763145_19763349 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 27.27 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 7.14 0.00 6.67 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 11.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pcf11 chr2R - chr2R_10756538_10757553 chr2R_10756537_10756538;chr2R_10757553_10757554 chr2R_10756412_10756537;chr2R_10757554_10757817 26.32 30.00 27.27 19.23 18.75 16.67 25.71 43.90 26.23 20.00 60.00 30.95 48.00 36.84 23.08 31.82 13.04 20.00 35.48 23.40 22.22 9.68 17.86 27.78 22.22 26.32 33.33 41.67 20.00 19.35 21.05 30.77 32.14 35.71 28.57 33.33 41.67 25.00 30.77 26.19 40.00 34.15 21.74 25.00 26.67 29.17 23.08 14.63 28.07 16.67 19.35 26.32 36.36 NA 21.43 53.33 NA 30.00 K jcn_only_AA CG34015 chrX - chrX_16341991_16342063 chrX_16341996_16342063 chrX_16342064_16342132;chrX_16341931_16341990 100.00 96.67 100.00 100.00 95.83 NA 97.96 98.00 95.00 NA NA 100.00 95.24 100.00 100.00 96.15 100.00 100.00 91.67 97.56 100.00 NA 95.00 100.00 NA 100.00 96.30 NA NA NA 100.00 NA NA 95.12 100.00 NA 100.00 100.00 88.89 100.00 NA 97.92 100.00 NA NA NA 100.00 NA 100.00 96.67 100.00 91.30 NA NA 96.55 100.00 97.62 95.83 K jcn_only_AA Nipped-B,I_chr2R_579746_579800,I_chr2R_580989_582555,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_579746_579800 chr2R_579752_579800 chr2R_579801_579900;chr2R_579646_579745 99.56 100.00 100.00 99.05 100.00 96.67 99.56 100.00 99.39 96.97 98.68 100.00 98.65 100.00 98.44 98.75 98.51 100.00 99.01 100.00 100.00 100.00 100.00 100.00 97.96 98.11 98.84 100.00 100.00 100.00 97.66 98.84 100.00 98.16 100.00 96.15 100.00 100.00 97.87 99.03 98.55 98.35 98.67 100.00 100.00 99.02 100.00 98.44 99.40 98.67 98.96 100.00 100.00 100.00 100.00 96.10 100.00 100.00 K intron_retention SmG,I_chrX_16534261_16534338,I_chrX_16534274_16534337,I_chrX_16534274_16534346 chrX - chrX_16534274_16534338 chrX_16534273_16534274;chrX_16534338_16534339 chrX_16534174_16534273;chrX_16534339_16534437 0.00 0.00 0.00 1.00 0.00 0.00 0.71 0.00 0.37 0.00 0.00 0.41 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.65 0.00 2.27 0.00 0.00 0.00 0.00 1.38 0.00 3.31 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.69 0.00 0.00 0.43 0.90 0.00 0.00 0.00 0.00 0.33 0.63 0.00 0.00 K cassette Jupiter,I_chr3R_7417030_7419354,I_chr3R_7418347_7445425,RI_chr3R_7442793_7445425 chr3R - chr3R_7418347_7419354 chr3R_7418347_7419043;chr3R_7419077_7419354 chr3R_7419044_7419076 chr3R_7418247_7418346;chr3R_7419355_7419454 0.20 0.00 0.00 1.26 0.00 0.26 0.00 0.24 0.33 0.00 0.52 4.04 0.00 0.33 0.28 0.57 0.00 0.39 0.32 0.74 0.00 0.25 0.00 0.00 0.00 0.34 0.21 0.00 0.26 0.00 0.24 0.15 0.22 0.44 0.00 0.20 0.00 0.00 0.00 0.10 0.29 0.14 0.42 0.00 0.31 0.16 0.23 0.16 0.31 0.18 0.20 0.00 0.00 0.25 0.27 0.22 0.00 0.26 K intron_retention CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4987241_4987906 chr2L_4987240_4987241;chr2L_4987906_4987907 chr2L_4987159_4987240;chr2L_4987907_4988048 34.29 28.57 25.00 37.93 24.24 26.47 42.19 39.47 35.05 28.00 28.00 32.14 40.00 42.42 30.23 36.07 28.57 48.39 34.88 33.71 22.58 58.49 30.00 31.25 38.46 28.26 41.07 54.17 49.09 36.17 35.59 34.29 27.66 34.94 27.66 34.38 23.33 22.64 26.47 32.39 40.43 32.38 36.67 30.91 24.14 36.51 31.25 30.91 31.91 54.05 29.31 35.48 40.00 36.00 31.82 41.94 40.74 36.17 K intron_retention betaInt-nu chr2L + chr2L_21053362_21053457 chr2L_21053361_21053362;chr2L_21053457_21053458 chr2L_21053285_21053361;chr2L_21053458_21053644 4.80 7.41 0.00 4.55 6.25 8.33 6.06 2.38 8.05 0.00 0.00 10.81 0.00 0.00 5.26 4.84 3.12 14.71 12.50 6.35 0.00 NA 8.33 0.00 4.00 10.53 17.65 NA 46.15 0.00 6.90 0.00 18.18 11.76 NA NA 6.90 0.00 0.00 0.00 6.25 4.17 7.41 3.23 NA 5.26 0.00 14.29 8.47 NA 2.38 4.76 0.00 NA 10.81 0.00 0.00 3.57 K intron_retention Rheb,RI_chr3R_1395455_1395563,CRMP chr3R + chr3R_1395505_1395563 chr3R_1395504_1395505;chr3R_1395563_1395564 chr3R_1395297_1395504;chr3R_1395564_1395663 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG11306 chr3L + chr3L_21619479_21620041 chr3L_21619479_21619531;chr3L_21619725_21620041 chr3L_21619532_21619724 chr3L_21619348_21619478;chr3L_21620042_21620500 100.00 99.02 100.00 99.48 100.00 100.00 100.00 99.52 99.56 100.00 100.00 99.56 99.10 100.00 100.00 100.00 100.00 100.00 99.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Zn72D,RF_chr3L_16100887_16102721,I_chr3L_16105199_16105253 chr3L - chr3L_16105199_16105299;chr3L_16105199_16105253;chr3L_16105199_16105318 chr3L_16105199_16105431 chr3L_16105099_16105198;chr3L_16105432_16105487 96.67 100.00 100.00 93.42 97.30 100.00 93.15 98.85 98.56 100.00 100.00 100.00 97.78 93.65 95.45 98.61 100.00 90.91 100.00 95.95 92.59 90.48 97.37 97.56 88.89 95.45 88.00 91.67 92.59 83.87 90.77 95.00 97.14 98.63 NA NA 92.31 100.00 95.24 88.46 100.00 100.00 97.37 100.00 95.65 94.44 NA 100.00 95.16 96.67 94.74 100.00 NA NA 91.30 NA 100.00 92.86 K alternative_donor nimB1 chr2L + chr2L_13964732_13964796 chr2L_13964739_13964796 chr2L_13964797_13964865;chr2L_13964670_13964731 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 95.45 93.75 94.12 95.83 100.00 98.46 91.67 90.00 92.86 93.75 100.00 93.33 100.00 NA NA 100.00 98.21 95.65 100.00 100.00 100.00 100.00 100.00 92.86 100.00 95.83 94.74 94.44 100.00 95.65 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 97.44 K intron_retention gpp,I_chr3R_2271795_2272181 chr3R + chr3R_2232814_2233271 chr3R_2232813_2232814;chr3R_2233271_2233272 chr3R_2232804_2232813;chr3R_2233272_2233496 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 NA 100.00 100.00 94.74 94.12 100.00 100.00 100.00 100.00 100.00 100.00 NA 94.12 100.00 93.75 100.00 91.67 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 96.43 93.33 100.00 NA 100.00 NA 95.24 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 K alternative_donor CG3940,I_chr3R_5942982_5943330 chr3R + chr3R_5938358_5943330 chr3R_5938536_5943330 chr3R_5943331_5943402;chr3R_5938323_5938357 88.89 NA NA NA NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 83.33 NA NA 100.00 NA NA NA NA NA 87.50 NA NA NA NA NA NA 88.89 87.50 N alternative_acceptor CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_261460_263113;chr4_261460_261555 chr4_261460_263086 chr4_261360_261459;chr4_263114_263305 64.71 63.64 64.29 21.05 75.00 81.82 53.33 67.74 62.79 NA 80.00 60.87 61.54 75.00 70.00 57.50 66.67 72.73 68.75 74.07 71.43 60.00 57.14 71.43 33.33 42.86 50.00 NA 75.00 33.33 64.71 83.33 66.67 62.96 60.00 50.00 60.00 60.00 NA 75.00 33.33 62.96 80.00 80.00 60.00 83.33 66.67 50.00 60.00 85.71 66.67 75.00 50.00 66.67 56.25 NA 71.43 71.43 K intron_retention RpS9,E_chr3L_9503090_9504155,E_chr3L_9503259_9504163,snoRNA:Me28S-G3253,I_chr3L_9504402_9504516 chr3L - chr3L_9503752_9504155 chr3L_9503751_9503752;chr3L_9504155_9504156 chr3L_9503565_9503751;chr3L_9504156_9504255 0.04 0.00 0.04 0.00 0.00 0.00 0.06 0.08 0.02 0.06 0.07 0.05 0.06 0.15 0.02 0.02 0.03 0.05 0.06 0.01 0.00 0.04 0.05 0.02 0.00 0.00 0.07 0.44 0.15 0.05 0.05 0.05 0.05 0.02 0.00 0.00 0.03 0.08 0.03 0.03 0.05 0.04 0.09 0.00 0.04 0.08 0.03 0.00 0.05 0.02 0.04 0.05 0.01 0.00 0.04 0.02 0.07 0.07 K alternative_acceptor eIF-4E,RI_chr3L_9394049_9394139,RI_chr3L_9394054_9394756,I_chr3L_9394468_9395446,I_chr3L_9394819_9395198,I_chr3L_9394819_9395379 chr3L - chr3L_9394049_9394139 chr3L_9394054_9394139 chr3L_9394140_9394239;chr3L_9393954_9394048 100.00 100.00 100.00 99.01 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.82 100.00 100.00 99.29 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.80 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.86 99.46 100.00 100.00 100.00 100.00 98.97 100.00 99.37 100.00 100.00 98.18 100.00 100.00 100.00 100.00 99.20 100.00 K intron_retention tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_563461_565293 chr3R_563460_563461;chr3R_565293_565294 chr3R_563195_563460;chr3R_565294_565301 77.78 78.57 71.43 91.11 70.83 70.37 54.17 81.58 67.82 82.35 76.47 85.45 86.36 89.29 84.00 84.78 80.00 78.57 67.57 77.27 66.67 76.92 77.42 67.65 76.47 77.42 75.86 73.33 68.00 73.68 75.68 66.67 90.91 79.49 81.82 77.78 86.11 80.00 65.38 83.87 84.62 76.27 77.78 89.47 100.00 77.78 64.00 89.47 77.78 76.47 91.43 83.33 73.68 87.50 88.89 85.71 67.57 80.00 N intron_retention Pde8,I_chr2R_19555184_19557424,CG42241,I_chr2R_19563512_19564565 chr2R + chr2R_19553559_19561808 chr2R_19553558_19553559;chr2R_19561808_19561809 chr2R_19553474_19553558;chr2R_19561809_19561865 100.00 100.00 100.00 54.55 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 50.00 100.00 100.00 100.00 NA 100.00 NA 23.08 100.00 100.00 100.00 100.00 100.00 100.00 36.36 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 K alternative_last_exon CG17598 chrX - chrX_21935505_21938689 chrX_21936673_21938689 chrX_21934692_21935504 chrX_21936107_21936672 chrX_21938690_21938827 4.88 2.86 6.67 15.38 4.76 3.85 9.68 11.43 9.52 4.55 0.00 4.35 5.88 7.41 5.71 13.79 9.52 3.45 11.54 11.59 4.35 3.92 5.88 5.56 2.94 4.00 6.98 2.56 4.44 2.44 13.16 3.12 2.33 7.14 6.25 5.56 1.72 4.55 4.00 3.12 3.23 5.08 9.52 4.26 1.85 6.67 4.88 8.33 8.93 2.50 3.45 6.67 2.78 5.26 8.82 4.35 4.08 6.82 K jcn_only_AA RpL5,I_chr2L_22428750_22428846 chr2L - chr2L_22429111_22429352 chr2L_22429298_22429352 chr2L_22429353_22429396 9.17 12.50 28.57 18.63 10.00 10.00 20.75 10.53 14.67 0.00 11.43 13.89 25.00 11.54 12.04 24.39 9.17 0.00 14.68 10.13 11.43 2.22 NA NA NA 4.90 NA 0.27 0.55 1.39 2.26 2.33 0.79 8.53 18.75 1.92 NA NA NA 0.66 0.99 8.86 15.69 0.42 3.01 1.97 NA 1.40 15.09 NA NA NA 5.43 NA 7.52 NA NA 15.34 K cassette AGO1,I_chr2R_9844856_9845327 chr2R - chr2R_9838423_9840553;chr2R_9838423_9842191 chr2R_9838423_9839118;chr2R_9839194_9840553,chr2R_9839194_9842191 chr2R_9839119_9839193 chr2R_9837637_9838422;chr2R_9842192_9842260 94.34 97.50 96.88 77.36 97.06 90.91 88.64 94.34 90.43 97.30 89.47 94.52 76.47 97.44 86.36 96.88 96.88 90.32 92.86 94.67 96.00 91.46 96.67 96.49 97.73 92.86 97.92 95.56 86.67 95.83 96.55 90.91 95.56 96.55 90.62 61.22 92.44 88.33 92.00 96.67 90.91 94.12 95.65 95.65 93.33 93.75 100.00 94.44 98.61 94.74 93.65 92.31 100.00 92.86 89.47 88.24 88.89 100.00 K intron_retention KdelR,CG5188 chr2L + chr2L_10427009_10427075 chr2L_10427008_10427009;chr2L_10427075_10427076 chr2L_10426867_10427008;chr2L_10427076_10428159 14.29 0.00 8.82 16.95 14.71 12.50 15.22 11.86 15.28 16.67 15.15 9.72 11.11 15.00 21.88 14.29 21.88 16.67 16.67 17.95 8.33 15.38 8.06 13.04 9.76 16.22 42.86 66.07 44.00 13.04 15.38 12.50 16.67 24.32 21.88 22.58 15.38 8.00 11.36 9.23 10.53 11.94 9.09 10.20 20.83 11.43 5.13 25.00 18.06 14.29 7.69 0.00 12.50 5.41 15.00 16.22 13.16 4.76 K jcn_only_AA CG31999,I_chr4_236187_238030,I_chr4_236686_238031,I_chr4_238453_238873,I_chr4_238809_238873,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_238453_238873;chr4_238809_238873 chr4_238121_238873 chr4_238874_238973;chr4_238032_238120 97.21 93.33 98.55 95.41 96.55 98.15 97.73 97.83 97.92 100.00 96.30 98.38 91.43 97.92 96.30 98.56 100.00 97.78 96.75 96.15 96.08 97.87 97.92 94.44 95.83 100.00 92.31 NA 93.75 97.92 98.26 94.74 96.15 97.69 97.06 100.00 94.74 96.00 100.00 95.95 100.00 97.28 100.00 93.33 100.00 100.00 97.14 100.00 98.17 94.74 88.57 96.97 100.00 98.18 97.12 93.10 96.70 97.06 K jcn_only_AD CG3558,RI_chr2L_2995071_2997790 chr2L + chr2L_2993464_2993544;chr2L_2993410_2993544;chr2L_2993378_2993544 chr2L_2993444_2993544 chr2L_2993545_2994408;chr2L_2993028_2993377 0.00 0.00 2.82 0.93 0.00 0.00 2.17 1.39 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 5.56 0.00 1.53 0.00 1.18 3.08 0.00 0.00 5.13 2.17 0.00 6.19 0.00 1.49 1.54 0.00 1.33 0.00 1.82 0.00 2.50 0.00 0.00 2.38 5.51 3.77 2.30 0.00 0.00 0.00 0.56 0.00 0.00 1.72 0.00 0.00 NA 1.25 0.00 0.00 0.62 K cassette bbc,REI_chr2R_9379401_9381986 chr2R - chr2R_9375638_9378939 chr2R_9375638_9378244;chr2R_9378377_9378939 chr2R_9378245_9378376 chr2R_9375479_9375637;chr2R_9378940_9379098 80.88 80.38 85.08 60.41 74.21 84.57 73.91 75.54 81.89 90.91 64.67 86.50 58.64 84.77 80.95 69.19 76.92 66.67 71.93 76.18 61.67 88.97 79.84 79.50 78.89 80.36 80.36 80.88 79.43 87.28 88.53 89.44 89.11 82.55 89.03 65.32 74.58 84.43 79.17 88.13 91.05 81.25 73.91 88.86 87.62 91.07 90.53 94.63 79.94 76.11 84.56 80.47 85.22 84.95 79.81 81.42 79.10 95.72 K alternative_donor Pk61C,CE_chr3L_129889_141769,I_chr3L_132531_133824,I_chr3L_133962_134014 chr3L + chr3L_132056_135457;chr3L_131934_135457;chr3L_131959_135457 chr3L_132531_135457 chr3L_135458_135842;chr3L_131849_131933 100.00 87.50 100.00 93.33 90.00 91.67 96.67 94.87 92.86 100.00 100.00 100.00 92.31 100.00 100.00 89.19 100.00 100.00 100.00 96.67 100.00 88.89 100.00 100.00 88.89 93.75 83.33 75.00 77.78 100.00 92.31 100.00 100.00 90.62 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 92.86 90.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG3651,I_chr2L_22124217_22124661,I_chr2L_22124698_22124781 chr2L + chr2L_22124217_22124661;chr2L_22124217_22124781 chr2L_22124217_22124786 chr2L_22124117_22124216;chr2L_22124787_22124881 2.60 1.79 1.96 3.60 3.65 4.00 5.36 1.43 1.75 4.42 2.54 3.76 3.97 3.55 2.44 2.15 3.85 2.13 3.80 2.78 2.73 2.00 4.21 0.89 4.65 2.53 1.72 1.69 3.64 4.48 2.27 1.00 2.33 3.86 4.03 2.54 2.60 1.92 3.08 4.04 2.39 3.36 4.04 2.76 1.33 1.97 2.91 1.57 2.47 2.71 5.26 0.69 2.41 0.63 2.04 3.24 0.59 2.95 K intron_retention Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4847655_4849003 chrX_4847654_4847655;chrX_4849003_4849004 chrX_4847526_4847654;chrX_4849004_4849551 5.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Imp,I_chrX_10699490_10700695,RI_chrX_10699665_10700501,RI_chrX_10699665_10700695 chrX - chrX_10699503_10700695 chrX_10699502_10699503;chrX_10700695_10700696 chrX_10699299_10699502;chrX_10700696_10700795 93.10 80.00 100.00 87.50 NA 90.00 100.00 93.75 89.19 NA 90.91 85.19 93.33 80.00 75.00 87.88 84.62 90.91 100.00 100.00 88.89 93.75 NA NA NA NA NA NA 100.00 100.00 93.33 NA 95.83 93.10 NA NA NA NA NA 90.91 NA 94.12 82.35 NA NA NA NA 100.00 85.19 NA NA NA NA NA 100.00 NA NA 100.00 K jcn_only_AD CG18596,I_chr3R_18203637_18203690,I_chr3R_18209085_18209133 chr3R + chr3R_18203633_18203690 chr3R_18203637_18203690 chr3R_18203691_18203790;chr3R_18203566_18203632 1.27 0.00 4.76 4.65 NA NA 0.00 5.26 0.00 NA NA 2.50 3.45 NA NA 2.78 3.57 NA 0.00 0.00 NA 2.00 0.00 3.33 3.33 3.33 4.76 1.27 0.00 0.00 9.38 NA NA 0.00 4.55 NA 4.55 NA NA 0.00 5.00 0.00 0.00 2.27 NA 0.00 NA NA 0.00 6.98 0.00 0.00 NA NA 0.00 NA 0.00 NA K alternative_donor CG16791 chr3R - chr3R_17149940_17160425 chr3R_17149940_17160248 chr3R_17149849_17149939;chr3R_17160426_17160490 94.44 94.12 92.86 96.55 91.67 86.67 94.12 90.62 93.94 92.31 90.00 96.67 90.91 100.00 94.12 85.19 100.00 100.00 95.00 97.56 100.00 81.82 94.44 94.44 90.00 82.35 95.00 100.00 100.00 100.00 90.91 93.33 94.44 96.55 91.67 92.86 100.00 100.00 94.44 95.65 91.67 96.77 93.33 92.86 92.86 94.44 92.31 100.00 96.97 92.31 100.00 90.91 100.00 100.00 100.00 100.00 90.91 96.30 K jcn_only_AA MSBP,I_chrX_15783766_15784027,RI_chrX_15783766_15784064,I_chrX_15783766_15785978 chrX - chrX_15783766_15783941 chrX_15783782_15783941 chrX_15783942_15783997;chrX_15783666_15783765 11.52 10.43 13.16 15.13 10.29 11.98 12.50 11.63 12.13 15.24 10.23 10.07 13.23 7.73 11.52 11.21 7.73 8.24 16.54 14.23 7.17 12.04 10.09 16.00 15.60 20.21 8.15 10.29 9.64 11.68 11.20 14.07 3.47 12.72 12.70 16.92 13.17 20.00 12.56 9.96 14.63 14.66 8.77 13.66 4.13 9.85 7.19 11.18 8.07 13.53 11.44 10.19 10.77 10.89 12.70 16.59 8.71 11.18 K intron_retention Psf3 chrX - chrX_10278460_10278520 chrX_10278459_10278460;chrX_10278520_10278521 chrX_10277414_10278459;chrX_10278521_10278915 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 2.17 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention bmm,I_chr3L_14772123_14772190 chr3L - chr3L_14770086_14770438 chr3L_14770085_14770086;chr3L_14770438_14770439 chr3L_14769603_14770085;chr3L_14770439_14770707 0.00 0.00 4.26 4.71 0.00 0.00 1.64 4.95 3.97 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 1.59 1.25 0.00 3.45 0.00 0.00 0.00 0.00 1.61 4.00 0.00 0.00 0.00 3.85 6.25 0.00 2.56 0.00 1.85 0.00 0.00 1.68 3.39 3.08 0.00 1.89 0.00 3.57 0.00 6.00 1.94 0.00 0.00 0.00 0.00 0.00 1.54 1.72 0.00 1.23 K alternative_last_exon CG32177,Krn chr3L - chr3L_17642347_17647091 chr3L_17643727_17647091 chr3L_17640539_17642346 chr3L_17642664_17643726 chr3L_17647092_17647376 30.49 30.49 23.29 23.53 28.85 25.00 24.24 30.84 28.38 26.09 5.26 32.03 32.73 27.69 31.51 23.71 26.79 25.42 29.17 26.67 10.17 45.35 35.35 32.35 30.91 25.76 30.95 23.61 52.11 30.16 28.17 32.79 28.57 28.07 36.92 32.84 35.71 30.67 36.27 28.04 32.81 28.78 26.79 37.21 40.91 33.01 30.68 30.77 29.37 28.28 36.47 31.67 35.29 41.79 29.27 34.62 34.12 23.40 K intron_retention Lag1,I_chrX_6152540_6152929,RI_chrX_6153758_6161036,I_chrX_6160907_6161036 chrX - chrX_6152540_6152682 chrX_6152539_6152540;chrX_6152682_6152683 chrX_6152440_6152539;chrX_6152683_6152827 1.03 0.79 1.03 1.07 1.05 0.34 0.75 1.28 0.86 0.00 0.00 1.65 0.94 1.52 1.22 1.68 1.56 0.00 1.17 0.65 0.89 1.04 0.73 0.65 1.32 2.51 1.65 1.72 1.41 0.50 0.27 0.00 0.89 1.06 1.54 0.66 1.18 0.70 1.00 1.56 1.33 1.12 1.54 0.59 0.60 0.98 1.23 0.00 1.23 1.05 1.11 0.27 0.76 1.33 0.96 1.08 0.99 0.00 K alternative_donor CG32016,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_978750_978816;chr4_978750_978914;chr4_978750_978910 chr4_978750_978939 chr4_978632_978749;chr4_978940_978943 12.50 NA NA NA NA NA 14.29 9.09 20.00 NA NA 8.33 NA 20.00 NA 7.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA 57.14 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG4901,RI_chr2L_10212268_10212326,RI_chr2L_10212403_10212451 chr2L + chr2L_10212403_10212467 chr2L_10212403_10212451 chr2L_10212327_10212402;chr2L_10212468_10212551 0.88 4.35 0.00 0.00 0.00 2.33 1.43 1.23 0.88 NA 0.00 5.80 2.50 0.00 0.00 0.00 2.56 0.00 1.67 1.55 0.00 1.56 0.00 0.00 0.00 0.00 0.00 4.35 1.30 1.49 5.36 0.00 1.68 0.00 2.13 4.88 0.00 4.44 2.63 0.88 0.00 5.88 0.00 2.27 0.00 3.23 0.00 0.00 0.00 0.00 3.51 NA 2.22 0.00 0.00 0.00 1.47 1.14 K intron_retention CG14414,I_chrX_14474880_14474927 chrX + chrX_14474880_14474951 chrX_14474879_14474880;chrX_14474951_14474952 chrX_14474780_14474879;chrX_14474952_14475027 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 4.48 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG15237 chr2R - chr2R_2697017_2697074 chr2R_2697016_2697017;chr2R_2697074_2697075 chr2R_2696929_2697016;chr2R_2697075_2697330 0.00 0.00 0.00 1.82 0.00 0.00 0.00 2.94 0.00 NA 0.00 1.69 0.00 0.00 5.56 0.00 0.00 0.00 0.00 2.60 0.00 NA 4.08 0.00 0.00 0.00 0.00 8.00 10.00 0.00 9.09 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 5.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention noncoding_18450,noncoding_18451,CG6982,CG17618,CG17618_CG6982 chr3R + chr3R_18552824_18554564 chr3R_18552823_18552824;chr3R_18554564_18554565 chr3R_18552763_18552823;chr3R_18554565_18554629 6.06 2.38 6.90 6.38 NA 7.41 8.89 4.76 7.41 NA 14.29 4.35 4.17 0.00 6.25 5.08 0.00 8.33 2.56 6.06 18.18 9.76 6.82 5.56 NA 8.70 0.00 0.00 21.05 5.88 5.26 NA 8.33 7.27 3.23 5.26 15.38 NA NA 6.12 0.00 7.32 5.56 0.00 3.85 0.00 6.25 11.76 7.46 13.33 0.00 11.11 0.00 0.00 10.87 0.00 8.33 0.00 K intron_retention CG17352,I_chr3L_8351006_8351949,I_chr3L_8351036_8351655 chr3L - chr3L_8346513_8346578 chr3L_8346512_8346513;chr3L_8346578_8346579 chr3L_8345596_8346512;chr3L_8346579_8347283 72.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 72.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention myoglianin,RI_chr4_712986_714006,E_chr4_716066_716347,RI_chr4_716066_716482,RI_chr4_716153_716613,E_chr4_716172_716351 chr4 - chr4_716066_716322 chr4_716065_716066;chr4_716322_716323 chr4_716053_716065;chr4_716323_716675 72.73 71.43 45.45 75.86 NA NA 85.71 76.00 73.53 NA NA 70.00 NA 64.29 NA 80.00 63.64 NA NA 73.33 NA NA 80.00 NA NA NA 69.23 NA NA NA 71.43 NA NA 80.95 NA NA NA NA NA 87.50 NA 78.26 69.23 87.50 NA NA NA NA 68.00 NA 72.73 70.00 NA NA 69.23 NA NA NA K alternative_donor CaMKI,I_chr4_473338_473410,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_473338_473428 chr4_473371_473428 chr4_473429_473444;chr4_473272_473337 100.00 100.00 100.00 96.67 100.00 100.00 96.77 97.30 97.78 100.00 92.86 96.43 100.00 100.00 95.45 100.00 94.74 100.00 100.00 100.00 100.00 92.86 93.75 100.00 90.00 92.86 100.00 NA 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 K alternative_donor Kr-h2 chr2L + chr2L_6071181_6072413 chr2L_6071188_6072413 chr2L_6072414_6072676;chr2L_6071112_6071180 99.15 99.18 100.00 99.20 100.00 98.80 99.21 99.12 98.95 98.33 100.00 99.44 97.80 100.00 98.97 99.29 100.00 100.00 98.90 100.00 98.61 98.31 98.55 99.15 100.00 97.37 99.25 100.00 100.00 98.97 99.19 98.65 97.96 99.11 96.97 99.14 100.00 100.00 99.32 99.16 100.00 99.34 98.77 98.45 97.56 99.32 99.27 100.00 100.00 98.78 99.03 98.31 100.00 97.96 99.04 99.12 98.23 96.97 K intron_retention Mlf,noncoding_7111,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CEI_chr2R_11826763_11827279 chr2R - chr2R_11823830_11823891 chr2R_11823829_11823830;chr2R_11823891_11823892 chr2R_11823822_11823829;chr2R_11823892_11824085 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.10 100.00 100.00 99.28 98.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette CG17698 chr3L + chr3L_23741161_23741523 chr3L_23741161_23741239;chr3L_23741474_23741523 chr3L_23741240_23741473 chr3L_23741051_23741160;chr3L_23741524_23741816 100.00 100.00 100.00 98.25 100.00 100.00 98.28 97.56 97.70 100.00 100.00 98.41 100.00 100.00 97.22 98.51 100.00 100.00 100.00 98.57 100.00 100.00 96.30 100.00 100.00 80.00 96.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 93.75 100.00 100.00 100.00 100.00 97.37 100.00 92.31 100.00 100.00 100.00 98.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Rgl chr3L - chr3L_13907626_13912290 chr3L_13907625_13907626;chr3L_13912290_13912291 chr3L_13907229_13907625;chr3L_13912291_13912342 17.86 14.29 22.22 18.18 NA 38.46 26.09 17.50 23.26 NA 18.75 23.08 23.08 31.25 28.57 25.00 30.00 NA 26.09 20.00 NA 11.54 17.86 15.00 14.29 17.39 12.00 NA 14.29 11.76 37.50 NA 7.14 25.71 15.79 12.50 10.00 NA 26.67 17.86 10.53 34.62 25.00 6.90 NA 6.67 NA 15.15 32.35 15.79 15.38 33.33 NA NA 17.24 NA NA NA K jcn_only_AD CG16936,RI_chr2R_20655101_20655166,I_chr2R_20660319_20660496 chr2R - chr2R_20655101_20655620;chr2R_20655101_20655476;chr2R_20655101_20655166 chr2R_20655101_20655161 chr2R_20655001_20655100;chr2R_20655621_20655665 2.86 3.03 2.74 3.57 3.17 1.41 2.86 0.00 2.09 5.19 5.88 1.27 1.45 4.48 2.82 5.19 2.47 74.07 1.47 3.90 2.70 4.35 1.01 4.23 2.38 0.00 5.80 0.00 2.86 2.44 9.09 7.58 3.26 1.52 0.00 NA 3.91 4.30 2.80 3.18 7.14 0.53 2.33 2.08 5.31 7.25 6.25 9.59 1.97 0.89 2.46 2.33 1.04 3.95 7.32 2.86 1.17 7.53 K alternative_donor CG4699 chr3R + chr3R_11624133_11624445;chr3R_11624190_11624445;chr3R_11624127_11624445 chr3R_11624200_11624445 chr3R_11624446_11624758;chr3R_11623809_11624126 46.88 42.50 42.50 31.25 31.71 45.45 69.09 74.14 60.00 40.38 55.56 40.85 52.78 56.76 64.15 44.74 54.05 60.71 46.67 60.92 50.00 50.41 50.00 46.77 44.44 48.78 43.64 41.07 45.45 67.06 38.64 56.90 43.00 60.66 54.24 31.58 36.23 40.43 49.25 50.79 42.86 52.08 37.50 62.26 36.17 42.86 43.24 48.72 37.23 40.00 55.10 59.38 53.49 46.88 48.08 56.76 38.24 40.50 K jcn_only_AD CG7028,I_chr3L_207277_208117 chr3L - chr3L_210400_210475 chr3L_210400_210453 chr3L_209784_210399;chr3L_210476_210738 0.00 NA NA NA NA NA NA NA 8.70 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA 4.76 NA NA NA 9.68 NA 0.00 NA NA NA NA 0.00 0.00 NA 2.94 0.00 NA 0.00 NA NA 0.00 NA NA 2.86 NA NA 4.35 NA NA NA NA NA NA NA K alternative_donor wge chr3R - chr3R_18543064_18545592 chr3R_18543064_18543161 chr3R_18542929_18543063;chr3R_18545593_18545739 3.75 2.44 3.12 2.33 3.85 3.03 5.56 2.27 3.12 5.26 6.45 2.60 4.76 3.33 2.94 9.09 4.76 5.56 3.70 3.75 6.67 7.55 1.39 4.00 2.70 2.56 4.44 21.74 10.81 2.38 2.20 5.00 2.78 3.57 2.50 2.08 4.26 3.70 1.49 2.78 4.76 3.17 5.88 6.45 3.57 6.06 4.55 2.00 4.48 9.09 3.45 3.12 2.63 5.00 4.65 9.52 13.04 5.26 K jcn_only_AA CG34213,RI_chr2R_19854960_19855038 chr2R - chr2R_19854960_19855038 chr2R_19854986_19855038 chr2R_19855039_19855104;chr2R_19854905_19854959 95.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 95.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG1407,RI_chr2R_5918919_5919093,I_chr2R_5918925_5919213,RI_chr2R_5918952_5919084,RI_chr2R_5918952_5919093 chr2R - chr2R_5918925_5919093 chr2R_5918952_5919093 chr2R_5919094_5919184;chr2R_5918852_5918924 67.35 58.70 60.61 48.28 75.61 73.53 63.93 62.04 67.86 70.97 74.47 70.83 82.05 59.52 63.64 65.82 73.33 55.74 68.25 63.96 67.35 80.00 64.71 58.18 69.57 78.57 63.33 81.25 77.27 67.86 62.12 55.00 71.43 65.96 74.07 92.31 70.49 58.70 55.88 71.79 63.16 68.10 69.23 60.71 76.00 51.02 57.14 82.61 65.42 59.62 57.14 67.44 60.00 58.82 72.31 60.47 72.22 79.41 K intron_retention betaCop chrX - chrX_18277292_18277495 chrX_18277291_18277292;chrX_18277495_18277496 chrX_18276636_18277291;chrX_18277496_18279305 0.00 0.00 0.55 0.57 0.00 0.00 0.00 0.99 0.54 0.00 1.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 1.70 0.00 0.00 0.00 0.70 0.74 0.92 0.00 0.00 0.50 0.00 0.00 0.45 0.00 1.41 0.00 0.00 1.06 0.43 0.74 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Eph,I_chr4_631523_634240,I_chr4_631555_631910,I_chr4_631643_631910,I_chr4_632065_634240,I_chr4_639690_640473,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_631523_634240 chr4_631523_631910;chr4_632065_634240 chr4_631911_632064 chr4_631455_631522;chr4_634241_634340 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 97.14 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 NA 100.00 93.75 100.00 100.00 100.00 N intron_retention zetaCOP chr3L - chr3L_16665251_16665553 chr3L_16665250_16665251;chr3L_16665553_16665554 chr3L_16665209_16665250;chr3L_16665554_16665644 100.00 100.00 100.00 87.65 NA NA 100.00 100.00 100.00 NA NA 100.00 79.41 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD MED10,I_chr3L_16225377_16225479 chr3L + chr3L_16225377_16225479 chr3L_16225424_16225479 chr3L_16225480_16225579;chr3L_16225277_16225376 100.00 100.00 98.68 100.00 100.00 100.00 100.00 100.00 98.65 100.00 100.00 99.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.35 98.53 100.00 98.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.01 99.33 100.00 100.00 96.88 99.07 98.61 98.53 100.00 100.00 100.00 100.00 98.46 100.00 100.00 100.00 99.22 98.97 K intron_retention Noa36 chr3R - chr3R_24424360_24424451 chr3R_24424359_24424360;chr3R_24424451_24424452 chr3R_24423756_24424359;chr3R_24424452_24425097 0.00 0.00 0.00 1.68 0.00 0.00 1.79 0.88 0.97 0.00 0.00 2.26 0.00 2.67 0.00 2.02 0.00 2.08 2.94 0.38 0.00 0.00 0.00 0.00 2.90 0.00 1.82 0.95 0.00 0.00 0.00 1.64 0.89 2.42 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.57 0.00 0.00 0.00 0.00 1.19 1.71 0.00 0.74 0.00 0.00 0.00 0.00 1.68 1.10 0.00 1.15 K cassette CG12734,I_chr3L_3183812_3183932,I_chr3L_3184645_3185360 chr3L + chr3L_3183800_3184251;chr3L_3183800_3184248 chr3L_3183800_3183932;chr3L_3183998_3184251,chr3L_3183998_3184248 chr3L_3183933_3183997 chr3L_3183712_3183799;chr3L_3184252_3184644 100.00 94.74 100.00 100.00 92.31 100.00 93.33 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 95.45 90.91 100.00 95.65 96.15 92.31 100.00 100.00 100.00 76.47 100.00 100.00 92.31 93.33 100.00 100.00 77.78 97.37 94.74 100.00 95.45 90.91 95.83 100.00 100.00 92.86 100.00 100.00 100.00 100.00 95.24 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG15093 chr2R - chr2R_14664332_14664398 chr2R_14664344_14664398 chr2R_14664399_14664462;chr2R_14664047_14664331 15.52 17.86 14.71 20.22 19.57 16.22 17.65 20.24 9.02 7.69 14.29 14.56 11.54 9.30 16.07 16.67 22.00 19.23 22.58 22.12 20.51 15.00 12.24 20.20 4.88 15.79 16.36 0.00 13.21 13.89 14.29 11.11 11.32 16.36 28.57 16.67 4.39 8.20 18.56 12.14 NA 14.14 24.24 16.23 14.81 21.33 20.00 4.35 17.24 8.33 15.25 12.77 12.24 16.98 20.41 11.11 12.28 17.78 K alternative_donor CG4877 chr3L + chr3L_16379595_16379731 chr3L_16379671_16379731 chr3L_16379732_16380052;chr3L_16379486_16379594 85.71 100.00 NA 72.73 NA NA 90.00 66.67 90.00 NA NA 75.00 87.50 83.33 75.00 76.92 NA 83.33 88.89 66.67 NA NA 76.47 88.89 62.50 100.00 NA NA NA 85.71 88.89 NA NA 72.73 NA 55.56 NA NA NA 100.00 NA 91.67 85.71 91.67 NA NA NA NA 75.00 NA 90.00 70.00 NA NA 87.50 NA NA NA K intron_retention CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8186256_8186313 chr2L_8186255_8186256;chr2L_8186313_8186314 chr2L_8186117_8186255;chr2L_8186314_8186675 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 1.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention vkg,I_chr2L_5027222_5027297,I_chr2L_5027222_5028118 chr2L - chr2L_5027204_5027351 chr2L_5027203_5027204;chr2L_5027351_5027352 chr2L_5027122_5027203;chr2L_5027352_5027389 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 84.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 K intron_retention CG8632,CG8646 chr2R + chr2R_8542602_8542653 chr2R_8542601_8542602;chr2R_8542653_8542654 chr2R_8542273_8542601;chr2R_8542654_8542728 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.13 3.92 0.00 5.26 0.00 6.67 9.09 0.00 0.00 0.00 16.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 4.26 3.85 2.13 0.00 0.00 NA 10.00 0.00 0.00 0.00 4.17 K jcn_only_AA CG6904,I_chr3R_10970962_10971422,I_chr3R_10970962_10972151,I_chr3R_10970962_10972185,I_chr3R_10970962_10972512,I_chr3R_10970962_10972522 chr3R - chr3R_10970962_10973196 chr3R_10971295_10973196 chr3R_10973197_10973329 2.50 0.00 3.12 5.31 1.15 0.00 7.32 0.77 0.00 4.00 4.17 5.88 0.00 0.00 0.95 7.50 0.00 46.77 3.53 2.38 1.59 6.06 3.03 4.17 NA 2.00 10.00 0.00 2.63 3.85 2.50 3.45 1.79 3.94 0.00 17.86 0.00 NA 0.00 1.33 2.78 3.03 1.56 0.00 0.00 5.88 NA 2.50 2.27 5.88 3.23 NA 2.50 NA 1.14 NA 0.00 1.28 K intron_retention CG4644 chr2L - chr2L_1107758_1107811 chr2L_1107757_1107758;chr2L_1107811_1107812 chr2L_1107373_1107757;chr2L_1107812_1107937 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Iap2,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CEI_chr2R_11826763_11827279 chr2R - chr2R_11821325_11821703 chr2R_11821324_11821325;chr2R_11821703_11821704 chr2R_11821304_11821324;chr2R_11821704_11822085 4.76 1.96 3.85 13.33 4.29 4.76 4.11 6.12 4.79 8.33 3.17 4.32 5.68 2.67 5.21 4.67 2.70 2.53 6.35 7.07 3.03 3.88 5.59 4.48 6.49 5.06 10.71 7.61 6.59 6.02 11.11 6.78 4.08 3.31 5.88 6.93 5.03 1.71 4.20 2.56 4.69 5.23 5.56 2.88 9.52 3.76 2.83 10.94 5.80 2.15 5.03 3.49 7.04 4.46 3.67 3.91 3.74 7.02 K intron_retention CG30109,CG30108,I_chr2R_13557316_13557647 chr2R + chr2R_13557138_13557647 chr2R_13557137_13557138;chr2R_13557647_13557648 chr2R_13556976_13557137;chr2R_13557648_13557747 87.50 NA 93.33 96.00 80.00 90.91 88.24 71.43 87.50 90.00 92.31 86.21 92.31 91.67 93.75 96.00 100.00 76.47 69.23 90.00 93.75 100.00 76.19 73.33 81.82 94.12 89.47 100.00 90.91 75.00 51.43 93.33 85.71 80.00 90.91 76.47 82.35 88.89 93.33 74.07 63.64 83.33 85.71 70.00 88.24 68.18 90.91 62.50 93.55 76.19 88.24 80.00 NA 90.91 75.00 82.35 83.33 54.84 K mutually_exclusive rl,I_chr2RHet_199154_207044,RI_chr2RHet_203476_203577,RI_chr2RHet_203592_207044,R_chr2RHet_207162_232568,I_chr2RHet_232696_247338,RI_chr2RHet_240197_247338 chr2RHet + chr2RHet_203476_232560,chr2RHet_232696_239911 chr2RHet_203476_207044,chr2RHet_207156_239911 chr2RHet_232561_232695 chr2RHet_207045_207155 chr2RHet_203436_203475;chr2RHet_239912_239917 31.66 NA NA NA NA NA 33.33 NA NA NA NA 37.50 0.00 NA NA 30.00 50.00 NA NA NA NA NA NA NA 33.33 40.00 20.00 NA 40.00 NA NA NA NA 40.00 NA 0.00 NA NA NA 0.00 NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA K intron_retention l(1)G0196,I_chrX_21900456_21904601 chrX + chrX_21907213_21907440 chrX_21907212_21907213;chrX_21907440_21907441 chrX_21906993_21907212;chrX_21907441_21907938 0.00 0.00 0.00 NA NA NA 0.00 4.35 0.00 NA 0.00 4.35 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 11.11 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 3.12 0.00 0.00 NA 3.85 0.00 0.00 0.00 0.00 3.23 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD RpL23A,E_chr3L_1667550_1667808,I_chr3L_1667736_1667806 chr3L - chr3L_1667736_1667808 chr3L_1667736_1667806 chr3L_1667636_1667735;chr3L_1667809_1667906 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.02 0.01 0.00 0.02 0.00 0.00 0.02 0.02 0.00 0.01 0.00 0.01 0.01 0.01 0.00 0.01 0.00 0.02 0.01 0.00 0.02 0.02 0.00 0.01 0.02 0.00 0.01 0.00 0.01 0.00 0.01 K alternative_donor fs(1)h,I_chrX_7938425_7938871,I_chrX_7938425_7938878,I_chrX_7938449_7944184,I_chrX_7950171_7952371,I_chrX_7954192_7955240 chrX - chrX_7938425_7938878;chrX_7938425_7938871 chrX_7938425_7944184 chrX_7938366_7938424;chrX_7944185_7944284 62.81 66.13 56.60 52.27 62.50 59.09 45.78 45.19 52.52 87.23 61.11 61.02 44.90 41.51 52.63 40.21 47.83 50.00 41.67 58.41 59.46 79.69 76.47 78.82 69.23 53.49 69.12 78.26 73.53 69.74 55.56 61.11 76.85 46.15 70.83 74.12 80.00 80.70 82.67 64.86 69.35 62.81 43.48 66.67 74.14 60.00 73.44 69.17 55.15 72.13 73.39 67.35 75.47 62.86 47.06 67.35 59.46 61.05 K jcn_only_AA CG6051 chr3R - chr3R_22952341_22952415 chr3R_22952344_22952415 chr3R_22952416_22953488;chr3R_22951169_22952340 100.00 100.00 100.00 100.00 95.24 NA 100.00 100.00 100.00 100.00 96.00 100.00 NA NA 100.00 NA 100.00 NA NA 96.83 100.00 100.00 100.00 98.70 98.21 100.00 97.01 100.00 100.00 100.00 NA 97.22 100.00 100.00 100.00 100.00 98.54 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 96.36 100.00 92.31 100.00 97.65 100.00 96.55 100.00 100.00 96.49 100.00 97.56 N jcn_only_AA sgg,I_chrX_2529065_2563945,I_chrX_2536127_2563666,I_chrX_2555127_2563666,I_chrX_2561695_2562135,I_chrX_2563342_2563666,I_chrX_2565856_2566099,I_chrX_2566157_2566946 chrX + chrX_2555127_2563666;chrX_2555127_2555372 chrX_2555127_2563945 chrX_2555119_2555126 98.08 100.00 100.00 100.00 NA 97.06 100.00 91.94 97.01 NA 100.00 100.00 NA 96.55 96.77 100.00 97.22 92.86 97.67 100.00 NA 98.15 96.72 100.00 NA 97.44 100.00 NA 100.00 97.30 100.00 100.00 98.00 94.92 95.45 100.00 95.45 100.00 100.00 100.00 100.00 98.48 96.55 96.72 96.43 100.00 93.94 100.00 82.89 93.75 94.59 100.00 NA 100.00 97.67 96.67 95.45 100.00 K jcn_only_AD CG7530,I_chr3R_10556352_10557136,eff chr3R - chr3R_10556352_10557130;chr3R_10556352_10557148;chr3R_10556352_10557126;chr3R_10556352_10557198 chr3R_10556352_10557105 chr3R_10556252_10556351;chr3R_10557199_10557231 4.00 1.74 10.28 4.88 0.98 2.78 4.88 2.38 3.08 3.70 1.32 5.44 0.00 6.98 3.88 5.00 0.00 3.51 5.10 6.34 2.53 NA 3.85 7.07 2.33 5.95 6.06 9.52 9.62 4.55 3.66 11.32 0.00 2.58 10.94 5.26 0.00 0.00 3.39 4.64 1.52 2.73 2.27 3.79 3.96 6.76 5.00 6.02 5.13 2.99 3.51 5.88 4.62 9.68 2.65 4.40 4.14 4.03 K alternative_donor tws,I_chr3R_5960899_5960978,CG6241 chr3R - chr3R_5959310_5960101;chr3R_5959310_5960041;chr3R_5959310_5959789;chr3R_5959310_5960049;chr3R_5959310_5960182;chr3R_5959310_5960026;chr3R_5959310_5960158;chr3R_5959310_5959679 chr3R_5959310_5960163 chr3R_5958937_5959309;chr3R_5960183_5960224 0.00 0.00 0.00 4.00 0.00 0.00 4.35 4.55 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG3702,I_chr2L_4226795_4226846 chr2L - chr2L_4226768_4226846 chr2L_4226795_4226846 chr2L_4226847_4226946;chr2L_4226695_4226767 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 1.19 0.54 0.00 1.32 0.00 0.00 0.00 1.59 0.00 0.48 0.00 0.51 0.51 0.75 0.88 0.00 0.00 2.10 0.00 0.00 1.01 0.00 0.39 0.93 0.79 0.62 0.00 1.06 0.79 0.44 0.65 0.65 0.00 0.79 0.00 0.52 0.00 0.43 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.38 K intron_retention casp,EI_chr2R_11914764_11914841 chr2R - chr2R_11914052_11914115 chr2R_11914051_11914052;chr2R_11914115_11914116 chr2R_11913844_11914051;chr2R_11914116_11914317 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 1.47 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 1.40 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 K jcn_only_AD Pvr,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8230332_8239691 chr2L_8230332_8239074 chr2L_8230232_8230331;chr2L_8239692_8239845 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.50 0.40 0.37 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.41 0.00 0.54 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.89 0.00 0.31 0.00 0.80 0.00 K alternative_acceptor RanBPM chr2R + chr2R_6322096_6322156;chr2R_6322096_6322150 chr2R_6322096_6322141 chr2R_6321932_6322095;chr2R_6322157_6322290 0.00 1.69 0.00 1.32 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 2.22 2.86 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 1.08 0.00 1.61 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32521,I_chrX_21077612_21082713,I_chrX_21080906_21082713,CREF_chrX_21082827_21152068,EF_chrX_21094675_21152068 chrX - chrX_21082302_21082713 chrX_21082301_21082302;chrX_21082713_21082714 chrX_21082107_21082301;chrX_21082714_21082813 0.79 0.39 1.52 1.06 0.00 2.73 1.71 0.00 0.85 0.64 1.12 1.19 0.00 2.42 2.38 1.45 1.48 1.25 0.93 0.49 2.27 0.90 0.27 0.15 0.48 0.00 0.42 0.59 0.67 0.79 3.19 0.39 0.86 1.72 0.98 0.00 0.50 0.34 0.26 1.04 0.50 1.00 1.52 0.41 1.25 1.23 0.39 3.75 1.46 0.26 0.36 0.00 0.37 0.25 1.24 0.00 0.23 1.00 K jcn_only_AA I_chr3L_207277_208117,thoc7,pyx chr3L - chr3L_212557_212617 chr3L_212560_212617 chr3L_212618_212687;chr3L_212445_212556 94.72 96.15 96.43 92.50 90.91 NA 97.62 97.14 93.65 90.00 100.00 100.00 87.50 100.00 85.71 94.44 NA 100.00 NA 91.76 96.55 96.30 100.00 NA NA NA 95.00 92.00 NA NA NA 97.30 NA 88.57 NA NA 93.65 100.00 92.59 92.00 96.55 96.55 NA 95.00 95.65 90.62 NA 89.29 91.18 96.67 NA NA 91.67 NA 100.00 88.00 90.91 89.19 K cassette eff,I_chr3R_10559606_10563141,REI_chr3R_10560141_10566101 chr3R - chr3R_10559606_10563141 chr3R_10559606_10560108;chr3R_10560141_10563141 chr3R_10560109_10560140 chr3R_10559506_10559605;chr3R_10563142_10563205 100.00 99.22 100.00 100.00 100.00 100.00 99.12 100.00 99.67 100.00 100.00 99.61 100.00 99.34 99.37 100.00 99.33 100.00 100.00 100.00 100.00 100.00 99.17 100.00 100.00 98.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.61 99.10 98.99 100.00 100.00 100.00 100.00 99.19 99.64 99.29 100.00 98.99 99.33 98.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG11163,I_chr2R_1666219_1669711 chr2R - chr2R_1666219_1670219;chr2R_1666219_1669803;chr2R_1666219_1670325;chr2R_1666219_1670281 chr2R_1666219_1670203 chr2R_1666119_1666218;chr2R_1670326_1670328 15.22 8.33 19.44 9.76 4.17 28.00 14.58 18.75 10.26 23.53 8.33 12.70 10.00 9.38 20.51 19.67 17.95 12.50 17.95 23.16 21.62 25.00 10.00 21.05 15.79 21.43 13.64 12.50 12.00 16.67 16.33 23.53 4.35 15.00 24.00 8.33 7.69 11.11 15.79 18.37 19.05 16.46 20.59 6.25 11.76 16.67 10.00 15.00 15.22 9.09 17.39 14.29 25.00 10.00 15.69 27.27 6.25 14.29 K intron_retention CG4699 chr3R + chr3R_11621302_11621367 chr3R_11621301_11621302;chr3R_11621367_11621368 chr3R_11620557_11621301;chr3R_11621368_11622613 0.00 2.70 0.00 1.72 0.00 2.56 3.45 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.30 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 2.27 2.70 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32037 chr3L - chr3L_9483608_9483665 chr3L_9483607_9483608;chr3L_9483665_9483666 chr3L_9483423_9483607;chr3L_9483666_9483789 20.00 14.29 NA NA NA NA NA NA NA NA NA 38.10 NA NA NA NA NA NA NA 9.52 NA 12.50 22.73 12.00 20.00 NA 0.00 NA NA NA 36.84 NA 20.00 36.84 NA 7.14 30.00 NA 17.39 36.84 NA 22.22 NA 7.14 0.00 21.05 9.52 NA 26.67 6.67 17.65 NA NA NA 40.00 46.15 NA NA K cassette Ptp10D,CEF_chrX_11516219_11517862,I_chrX_11516225_11516345 chrX + chrX_11567495_11569363 chrX_11567495_11567763;chrX_11569060_11569363 chrX_11567764_11569059 chrX_11567366_11567494;chrX_11569364_11569672 93.33 88.33 95.83 97.01 90.24 97.78 91.84 79.17 93.81 86.67 90.62 88.10 70.97 90.91 94.12 96.08 97.50 100.00 91.67 93.97 96.88 95.29 89.41 91.67 86.36 97.22 96.67 100.00 97.96 93.44 92.98 83.33 96.12 93.33 87.72 100.00 96.26 93.33 94.17 92.47 94.59 90.48 94.29 94.74 96.77 86.57 98.11 89.81 92.55 88.00 90.54 97.50 95.45 92.50 89.83 92.31 97.73 92.31 K intron_retention CG4266,I_chr2R_17052549_17053657 chr2R - chr2R_17053380_17054234 chr2R_17053379_17053380;chr2R_17054234_17054235 chr2R_17053064_17053379;chr2R_17054235_17054339 0.00 0.00 1.61 0.00 0.00 1.61 0.00 2.44 0.73 0.00 0.00 1.47 5.26 0.00 0.00 3.90 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 2.04 0.00 0.86 0.72 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.74 0.00 0.00 0.00 N cassette Dscam,F_chr2R_3219886_3228832,F_chr2R_3226043_3235353,F_chr2R_3227948_3235353,F_chr2R_3228738_3235353,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3219886_3235353;chr2R_3219886_3232989 chr2R_3219886_3232565;chr2R_3232857_3232989,chr2R_3232857_3235353 chr2R_3232566_3232856 chr2R_3219786_3219885;chr2R_3235354_3235453 30.00 14.29 23.53 17.65 36.36 44.44 30.00 24.14 42.31 36.36 NA 67.86 13.04 41.67 38.46 57.14 45.45 60.00 50.00 53.12 33.33 7.32 33.33 44.44 40.00 25.00 33.33 42.86 10.00 20.00 28.57 NA 5.71 36.36 NA 22.22 17.65 15.38 33.33 17.86 NA 32.00 80.00 23.08 NA 18.18 NA 30.00 28.12 NA 12.50 14.29 NA NA 24.00 5.56 NA 7.69 N jcn_only_AD CG15908_CG9410,CG15908,CG9410 chr2R + chr2R_2556730_2556834 chr2R_2556738_2556834 chr2R_2556835_2556939;chr2R_2556598_2556729 46.31 30.00 NA 35.71 60.00 NA 33.33 56.25 53.33 NA 45.00 43.64 NA NA 0.00 42.86 50.00 44.44 NA 40.00 NA 50.00 65.62 47.06 NA NA NA 0.00 53.57 57.14 72.73 50.00 58.06 51.22 55.17 39.13 46.67 NA 46.88 43.14 44.00 54.55 NA 39.29 56.25 57.50 52.17 39.47 38.71 42.86 45.95 44.83 59.26 NA 30.77 47.50 40.00 33.33 K cassette Psa,I_chr3L_1518053_1518213 chr3L + chr3L_1502982_1519946 chr3L_1502982_1518176;chr3L_1518797_1519946 chr3L_1518177_1518796 chr3L_1502976_1502981;chr3L_1519947_1520763 100.00 100.00 99.39 100.00 99.20 100.00 99.45 99.55 99.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.67 100.00 99.60 99.55 100.00 100.00 100.00 99.47 98.98 100.00 100.00 100.00 99.19 99.67 100.00 100.00 99.35 100.00 100.00 99.52 99.65 100.00 99.67 99.14 100.00 100.00 99.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.24 100.00 100.00 100.00 K intron_retention Tango5,noncoding_22970,I_chrX_10659836_10661185 chrX - chrX_10656468_10657903 chrX_10656467_10656468;chrX_10657903_10657904 chrX_10656442_10656467;chrX_10657904_10658026 91.67 90.00 100.00 88.89 NA 77.78 100.00 100.00 95.65 NA 100.00 100.00 NA NA 100.00 91.67 NA NA 90.91 94.44 NA 76.92 100.00 88.89 NA NA 100.00 90.91 83.33 100.00 NA NA 90.00 81.82 NA 88.89 88.89 NA NA NA 100.00 94.74 NA NA NA 63.64 NA 77.78 91.67 NA 100.00 NA NA NA NA NA NA NA K jcn_only_AD lt,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22832029_22832085 chr2L_22832038_22832085 chr2L_22832086_22832154;chr2L_22831938_22832028 95.83 92.96 94.79 94.94 93.75 100.00 94.94 97.57 95.45 96.43 96.15 97.59 95.88 96.74 91.92 98.00 97.00 95.83 95.49 95.60 93.22 97.80 94.52 95.95 96.30 98.68 93.75 NA NA 93.75 97.66 93.62 93.48 97.45 94.94 97.01 100.00 100.00 100.00 94.19 100.00 96.28 91.40 93.59 96.67 95.70 100.00 98.53 95.39 89.06 98.15 95.24 100.00 93.59 95.05 92.86 94.34 98.73 K intron_retention CG14969,RI_chr3L_3334172_3334883 chr3L - chr3L_3333693_3333744 chr3L_3333692_3333693;chr3L_3333744_3333745 chr3L_3332965_3333692;chr3L_3333745_3333925 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.70 1.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 K alternative_donor CG6697 chr3R + chr3R_18887499_18887598 chr3R_18887542_18887598 chr3R_18887599_18888474;chr3R_18887241_18887498 100.00 100.00 95.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 96.43 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 95.45 95.83 100.00 96.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 K intron_retention Ect4,C_chr3L_8091754_8101552,I_chr3L_8091826_8092243,I_chr3L_8098397_8101385,I_chr3L_8098758_8101738,I_chr3L_8100030_8101385 chr3L + chr3L_8098758_8099115 chr3L_8098757_8098758;chr3L_8099115_8099116 chr3L_8098658_8098757;chr3L_8099116_8100029 87.50 91.75 88.43 99.49 98.41 89.02 95.45 94.92 90.50 65.18 92.19 74.87 100.00 92.31 95.60 86.41 96.39 87.88 96.04 82.68 90.00 77.67 80.66 82.86 85.51 91.30 92.05 89.73 62.10 80.61 93.62 68.84 73.39 89.19 87.34 67.86 82.66 89.81 84.57 78.62 79.78 88.41 90.91 85.98 60.42 73.68 83.72 71.57 87.76 87.50 88.67 90.28 66.67 79.07 94.25 82.40 80.77 65.38 K alternative_acceptor CG7546 chr3L + chr3L_7507455_7508147 chr3L_7507455_7507748 chr3L_7506918_7507454;chr3L_7508148_7508681 2.90 3.28 3.39 1.15 2.00 3.77 1.10 2.94 2.53 2.50 1.75 6.19 1.92 4.65 3.85 3.57 2.08 2.00 2.27 3.10 2.70 6.34 2.90 2.21 2.73 2.56 2.72 2.94 3.54 2.24 2.78 3.85 4.92 3.23 4.11 4.60 2.77 3.50 2.40 2.86 2.38 3.03 2.78 2.26 6.38 4.95 2.38 4.85 2.97 3.85 2.40 2.44 5.49 5.19 3.57 2.56 2.46 8.97 K jcn_only_AA CG1890,CG1896,I_chr3R_27573809_27574675 chr3R + chr3R_27569560_27569621 chr3R_27569560_27569614 chr3R_27569187_27569559;chr3R_27569622_27569990 100.00 99.78 100.00 100.00 100.00 100.00 99.79 100.00 100.00 100.00 100.00 99.74 100.00 100.00 100.00 100.00 100.00 100.00 99.69 100.00 100.00 100.00 100.00 100.00 99.38 100.00 100.00 100.00 100.00 99.73 100.00 99.84 99.88 100.00 99.76 100.00 100.00 99.74 100.00 100.00 100.00 100.00 100.00 100.00 99.87 99.90 100.00 100.00 100.00 100.00 100.00 100.00 99.81 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG1970,I_chr4_590803_590943,I_chr4_590970_591026,I_chr4_590970_591030 chr4 - chr4_590970_591034;chr4_590970_591030 chr4_590970_591026 chr4_590944_590969;chr4_591035_591043 0.40 0.82 0.00 0.33 0.00 0.41 1.63 0.27 0.20 0.00 0.00 0.24 0.00 0.00 0.75 0.71 0.49 0.00 0.92 0.19 0.00 1.14 0.63 1.15 0.00 0.58 1.54 1.14 0.65 0.39 0.68 0.85 0.91 0.30 0.00 2.20 0.23 0.00 0.31 0.20 0.00 0.51 0.00 0.76 0.29 0.52 0.40 0.66 0.72 0.00 0.61 0.00 0.53 0.63 0.32 1.09 0.00 0.43 K intron_retention CG1962 chr2L - chr2L_20678953_20679104 chr2L_20678952_20678953;chr2L_20679104_20679105 chr2L_20678921_20678952;chr2L_20679105_20679308 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 95.45 NA NA 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 NA NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 NA NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention zetaCOP chr3L - chr3L_16664943_16665553 chr3L_16664942_16664943;chr3L_16665553_16665554 chr3L_16664764_16664942;chr3L_16665554_16665644 4.32 2.59 5.39 25.99 2.56 3.18 17.20 7.91 3.40 2.88 3.31 3.49 16.38 5.33 4.23 6.80 5.81 3.59 5.28 4.80 4.32 10.71 3.50 4.64 10.08 7.39 6.45 8.91 3.65 3.23 4.50 2.55 6.19 6.46 4.55 18.75 3.94 3.85 2.92 4.35 5.99 5.26 3.38 2.65 3.60 4.10 2.48 3.98 6.08 4.53 4.74 3.88 2.27 2.96 4.71 2.69 2.65 2.81 K alternative_donor ND42,RI_chr3R_17861471_17861539 chr3R + chr3R_17853503_17853741 chr3R_17853547_17853741 chr3R_17853742_17854870;chr3R_17853498_17853502 0.00 0.00 0.00 0.00 2.08 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11876,CG11877 chr3R + chr3R_24938863_24938930 chr3R_24938862_24938863;chr3R_24938930_24938931 chr3R_24938854_24938862;chr3R_24938931_24939171 13.92 9.76 9.52 24.24 17.50 5.71 16.67 9.43 10.20 16.67 16.28 13.89 10.71 16.67 10.34 9.68 6.52 8.89 13.95 10.98 7.69 10.81 38.46 16.22 32.00 24.49 55.56 25.71 63.64 24.00 7.50 12.50 9.09 8.70 11.76 38.89 25.00 25.00 13.79 7.22 21.05 7.27 15.38 10.42 5.19 16.28 20.00 14.29 11.58 17.24 25.00 NA 10.91 26.09 8.89 29.41 36.36 10.61 K intron_retention CG5850,I_chr2L_9963013_9963451 chr2L - chr2L_9962678_9962734 chr2L_9962677_9962678;chr2L_9962734_9962735 chr2L_9962471_9962677;chr2L_9962735_9963012 1.22 1.63 1.54 1.52 0.00 0.00 0.00 0.00 0.89 0.00 1.96 0.57 0.00 0.00 0.73 0.00 0.00 0.00 0.00 2.02 1.94 0.00 3.19 1.36 4.17 1.32 1.73 2.08 6.74 0.00 3.74 1.47 1.25 0.73 2.22 4.04 2.00 0.00 2.07 1.55 4.84 1.05 0.00 0.00 2.04 1.75 2.52 0.00 1.22 0.00 0.69 0.00 0.00 2.11 0.00 0.00 2.14 3.03 K intron_retention CG15118,I_chr2R_15024324_15024455 chr2R - chr2R_15024576_15024628 chr2R_15024575_15024576;chr2R_15024628_15024629 chr2R_15024456_15024575;chr2R_15024629_15024653 96.15 90.91 95.83 97.14 85.00 100.00 96.00 96.15 90.24 NA 100.00 92.31 88.24 93.75 100.00 95.65 100.00 93.75 93.33 92.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 90.91 95.45 84.62 100.00 95.24 NA 100.00 93.75 100.00 NA 95.00 NA 94.59 88.24 100.00 86.67 81.82 100.00 90.00 94.59 91.67 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 K alternative_donor sax chr2R + chr2R_3694104_3694576 chr2R_3694518_3694576 chr2R_3694577_3694706;chr2R_3694102_3694103 3.57 2.78 3.33 3.77 3.85 3.85 6.98 1.67 3.70 0.00 0.00 3.08 0.00 4.65 2.27 4.08 2.94 14.81 0.00 3.80 3.85 15.38 2.56 2.44 2.94 2.63 3.85 13.04 13.79 4.35 8.57 5.00 11.11 3.17 2.94 6.90 2.38 3.45 3.57 5.36 7.69 3.57 2.94 5.00 10.00 3.12 2.78 11.54 3.75 5.71 2.13 5.41 2.94 0.00 0.00 0.00 3.23 3.85 K alternative_acceptor I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545781_17545855 chr2R_17545781_17545850 chr2R_17545730_17545780;chr2R_17545856_17545985 70.59 78.57 66.67 71.43 NA 55.56 68.18 72.22 79.17 81.82 64.29 62.50 NA NA 71.43 73.33 NA 46.67 NA 72.00 69.23 NA 47.37 56.25 NA NA 90.00 NA 68.18 70.00 60.00 66.67 88.89 70.59 NA NA 68.00 66.67 73.68 73.68 60.00 75.00 NA 92.31 75.00 64.00 78.95 100.00 50.00 92.86 83.33 88.89 72.73 61.90 90.91 63.64 65.00 68.42 K intron_retention PNUTS,I_chr2L_870553_871317 chr2L + chr2L_870553_871340 chr2L_870552_870553;chr2L_871340_871341 chr2L_870478_870552;chr2L_871341_871417 16.67 7.69 29.41 23.68 9.52 11.11 12.66 6.35 8.33 11.76 9.52 16.36 12.50 21.05 15.79 24.44 0.00 22.22 20.00 20.59 16.67 19.05 12.66 10.64 28.57 16.67 19.15 20.69 24.32 12.50 21.05 40.00 11.32 14.04 19.35 26.83 4.00 4.08 8.82 20.00 44.00 13.33 12.50 2.67 27.78 35.00 14.58 27.50 11.86 25.71 18.87 11.76 22.22 35.00 10.34 11.76 26.53 26.09 K intron_retention Synd chr3R + chr3R_16664938_16665012 chr3R_16664937_16664938;chr3R_16665012_16665013 chr3R_16664780_16664937;chr3R_16665013_16665840 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.47 0.00 0.00 1.08 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.88 1.64 2.60 0.81 0.94 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 1.18 0.54 0.83 0.00 1.51 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.40 K jcn_only_AD l(2)s5379,RI_chr2L_2228057_2229265,I_chr2L_2229012_2229265,I_chr2L_2229179_2229265 chr2L + chr2L_2228057_2229265;chr2L_2227282_2229265 chr2L_2229012_2229265 chr2L_2229266_2229365;chr2L_2227182_2227281 0.00 0.60 0.46 0.00 0.00 0.00 0.00 0.00 0.63 1.55 0.66 0.31 0.00 0.00 0.78 0.00 1.84 0.00 0.42 0.23 0.63 0.53 0.57 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.76 1.41 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.34 0.00 1.26 0.00 0.35 0.47 0.00 0.18 0.00 1.63 0.00 0.00 0.00 0.00 0.80 0.75 0.62 0.16 K alternative_acceptor rudimentary,I_chrX_16561903_16561969 chrX + chrX_16549643_16550417 chrX_16549643_16550361 chrX_16549413_16549642;chrX_16550418_16551189 2.58 2.38 1.64 5.63 0.00 0.00 12.12 3.48 2.46 4.55 5.71 6.25 2.22 1.92 3.70 2.56 6.67 4.44 1.54 2.33 0.00 11.54 4.55 7.41 20.00 9.80 2.27 0.00 6.67 14.29 1.47 6.67 4.65 3.03 6.67 0.00 3.33 3.23 1.67 6.12 NA 2.59 2.17 0.00 0.00 NA 5.56 3.23 4.39 0.00 2.22 0.00 0.00 NA 1.47 0.00 0.00 0.00 K intron_retention TER94,RI_chr2R_5880423_5880471 chr2R + chr2R_5880423_5880488 chr2R_5880422_5880423;chr2R_5880488_5880489 chr2R_5880323_5880422;chr2R_5880489_5880571 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.69 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.47 1.17 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.56 0.00 0.26 0.00 0.00 K intron_retention roq,CG4753 chr3L - chr3L_16367768_16367959 chr3L_16367767_16367768;chr3L_16367959_16367960 chr3L_16367508_16367767;chr3L_16367960_16370110 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10741,CG17689 chr3L + chr3L_13480831_13493999 chr3L_13480830_13480831;chr3L_13493999_13494000 chr3L_13480663_13480830;chr3L_13494000_13494314 3.03 2.13 0.00 7.27 0.00 2.78 2.44 13.73 5.88 0.00 3.57 6.94 12.00 7.41 4.55 11.11 0.00 12.20 4.88 6.10 4.55 6.52 5.63 3.03 0.00 0.00 2.90 12.50 6.35 5.00 0.00 0.00 0.00 7.69 2.78 0.00 1.64 2.90 1.83 4.35 0.00 6.49 0.00 7.69 0.00 0.00 3.03 0.00 7.79 2.35 5.71 9.38 0.00 2.13 7.69 3.45 7.41 0.00 K jcn_only_AD psq,RI_chr2R_6449696_6467831 chr2R + chr2R_6493640_6498054;chr2R_6449696_6498054;chr2R_6457648_6498054 chr2R_6493563_6498054 chr2R_6498055_6499020 0.00 0.00 0.00 2.90 3.33 0.00 2.22 2.50 2.17 3.45 0.00 1.09 0.00 2.38 1.96 0.00 0.00 0.00 3.03 2.33 0.00 4.44 1.39 0.00 0.00 0.00 0.00 19.05 NA 2.50 3.57 NA 2.94 0.00 0.00 0.00 1.16 2.04 1.79 0.00 NA 0.94 0.00 0.00 NA 0.00 0.00 0.00 0.97 0.00 3.45 0.00 0.00 NA 1.96 0.00 0.00 0.00 K alternative_donor CdGAPr chr2L - chr2L_19782826_19791763 chr2L_19782826_19782882 chr2L_19782421_19782825;chr2L_19791764_19791863 2.22 3.70 3.23 3.23 0.00 3.57 3.70 2.38 3.92 0.00 6.67 4.17 4.76 3.57 3.57 1.59 5.56 3.70 5.00 1.43 4.35 4.00 1.33 2.70 2.94 3.57 5.56 3.45 2.38 1.89 1.75 0.00 1.89 2.13 2.44 2.13 2.00 2.94 1.59 1.72 4.55 2.22 5.00 1.85 0.00 0.00 0.00 1.47 1.92 0.00 1.69 3.85 0.00 0.00 2.04 0.00 0.00 0.00 K intron_retention exba,I_chr3R_1425087_1425925,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1424767_1424837 chr3R_1424766_1424767;chr3R_1424837_1424838 chr3R_1424666_1424766;chr3R_1424838_1425086 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 1.25 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Ctr1A,I_chrX_6558480_6559032 chrX + chrX_6560303_6560882 chrX_6560302_6560303;chrX_6560882_6560883 chrX_6560273_6560302;chrX_6560883_6561458 28.57 NA NA NA NA NA NA NA 25.00 NA NA 38.89 NA NA NA NA NA NA NA 28.57 NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA 46.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor exba,I_chr3R_1425087_1425925,I_chr3R_1425813_1426009,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1425890_1426125;chr3R_1425890_1426209 chr3R_1425890_1426009 chr3R_1425790_1425889;chr3R_1426210_1426225 87.50 87.50 90.00 92.86 83.33 87.50 81.25 94.74 92.31 71.43 83.33 83.33 85.71 91.67 88.89 96.30 87.50 81.82 92.86 94.44 80.00 NA 93.33 90.00 83.33 87.50 85.71 80.00 70.00 85.71 84.62 70.00 NA 83.33 90.00 85.71 83.33 80.00 75.00 86.67 66.67 88.89 91.67 92.86 66.67 94.12 83.33 75.00 96.15 88.89 91.67 87.50 100.00 75.00 88.89 87.50 75.00 87.50 K cassette Pkn,CI_chr2R_5143544_5146344,I_chr2R_5171635_5172166 chr2R - chr2R_5143215_5146344;chr2R_5143544_5146344 chr2R_5143544_5144914,chr2R_5143215_5144914;chr2R_5145185_5146344 chr2R_5144915_5145184 chr2R_5143018_5143214;chr2R_5146345_5146444 7.32 2.63 12.50 8.89 8.00 6.45 4.55 2.94 8.47 9.84 4.76 10.91 15.00 4.76 10.00 11.43 4.55 3.45 5.56 13.16 4.76 14.00 8.54 8.33 7.32 5.00 5.06 5.48 7.46 6.67 8.33 10.71 14.58 7.14 9.38 6.56 8.54 7.55 5.10 6.98 4.35 7.81 4.35 5.81 9.38 7.50 7.14 11.76 8.16 4.44 5.88 5.56 8.70 3.85 3.57 9.68 3.85 11.43 K intron_retention Gap1,noncoding_11763,CE_chr3L_9835764_9836327 chr3L - chr3L_9835764_9836331 chr3L_9835763_9835764;chr3L_9836331_9836332 chr3L_9835664_9835763;chr3L_9836332_9836427 0.00 0.00 0.00 3.70 0.00 0.00 4.65 1.67 0.00 0.00 0.00 1.16 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 2.82 1.69 1.67 0.00 0.00 1.96 8.82 0.00 1.47 0.00 6.90 2.78 0.00 6.52 2.33 2.99 0.00 0.00 4.92 4.35 0.00 0.00 0.00 0.00 4.08 0.00 2.86 2.50 0.00 2.60 0.00 0.00 0.00 3.17 0.00 0.00 0.00 K intron_retention CG17838,I_chr3R_16623576_16628011,I_chr3R_16625404_16631668 chr3R + chr3R_16624132_16631668 chr3R_16624131_16624132;chr3R_16631668_16631669 chr3R_16624037_16624131;chr3R_16631669_16631768 8.33 0.00 8.33 13.51 7.14 0.00 20.83 15.09 12.24 0.00 11.11 8.33 0.00 NA 6.90 16.67 5.56 11.11 10.53 6.90 15.79 13.33 3.33 6.06 3.85 10.71 6.25 25.00 7.69 12.00 8.00 NA 7.50 13.64 8.33 2.70 0.00 0.00 4.44 15.62 NA 11.48 10.00 8.33 NA 10.53 0.00 10.81 16.28 NA 8.11 0.00 NA NA 18.52 NA NA 21.43 K cassette CG10737 chr2R + chr2R_15051681_15058190 chr2R_15051681_15052668;chr2R_15053032_15058190 chr2R_15052669_15053031 chr2R_15051670_15051680;chr2R_15058191_15058666 33.33 NA NA 25.00 NA NA 55.56 30.00 54.55 NA NA 83.33 NA 66.67 20.00 85.71 33.33 NA 25.00 55.56 NA NA NA NA NA 30.00 75.00 NA NA NA 15.38 NA NA 33.33 NA NA NA NA NA NA NA 17.65 33.33 NA NA NA NA 42.86 33.33 NA 75.00 NA NA NA 10.00 NA 80.00 NA K alternative_last_exon CG34383,noncoding_16598,RI_chr3R_9587500_9588422 chr3R + chr3R_9576169_9582097 chr3R_9576169_9577965 chr3R_9582098_9582384 chr3R_9577966_9578547 chr3R_9576161_9576168 5.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 11.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA N cassette Dscam,F_chr2R_3219886_3225754,I_chr2R_3219886_3226532,FI_chr2R_3219886_3227659,F_chr2R_3219886_3228449,F_chr2R_3219886_3228832,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3219886_3235353 chr2R_3219886_3223220;chr2R_3223509_3235353 chr2R_3223221_3223508 chr2R_3219786_3219885;chr2R_3235354_3235453 44.23 22.22 36.36 22.22 NA 100.00 27.27 23.53 100.00 NA NA 100.00 16.67 NA NA 100.00 100.00 NA NA 100.00 NA 14.29 100.00 NA NA NA NA NA 25.00 100.00 NA NA 5.88 NA NA NA 100.00 NA 100.00 25.00 NA 100.00 NA NA NA NA NA NA 50.00 NA 20.00 NA NA NA 38.46 NA NA NA K intron_retention l(1)dd4 chrX - chrX_13636011_13636081 chrX_13636010_13636011;chrX_13636081_13636082 chrX_13635717_13636010;chrX_13636082_13636274 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 6.06 0.00 NA 5.00 0.00 0.00 2.70 0.00 15.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 3.23 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 4.35 4.88 K intron_retention PPP4R2r chrX + chrX_10373054_10373505 chrX_10373053_10373054;chrX_10373505_10373506 chrX_10372866_10373053;chrX_10373506_10373750 96.43 NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA 88.89 NA 90.00 NA 88.89 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA 88.89 NA 100.00 NA NA NA 100.00 92.86 NA NA NA NA NA NA NA NA 100.00 N cassette shep,RI_chr3L_5163541_5194164,I_chr3L_5177084_5177314,I_chr3L_5193467_5212049 chr3L - chr3L_5154702_5156066 chr3L_5154702_5155555;chr3L_5155732_5156066 chr3L_5155556_5155731 chr3L_5153808_5154701;chr3L_5156067_5156229 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG3271,CG9422,I_chr2R_2584435_2585553 chr2R + chr2R_2562233_2562285 chr2R_2562232_2562233;chr2R_2562285_2562286 chr2R_2561766_2562232;chr2R_2562286_2562649 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA N cassette CG6912 chr3R - chr3R_10962115_10962431 chr3R_10962115_10962204;chr3R_10962254_10962431 chr3R_10962205_10962253 chr3R_10962052_10962114;chr3R_10962432_10962439 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 45.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K multi_cassette trio,I_chr3L_999683_1009321 chr3L - chr3L_999683_1009321 chr3L_999683_1003395;chr3L_1003654_1003727;chr3L_1003822_1009321 chr3L_1003396_1003653;chr3L_1003728_1003821 chr3L_999617_999682;chr3L_1009322_1009379 100.00 100.00 100.00 99.16 100.00 100.00 100.00 98.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.55 99.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.20 100.00 100.00 100.00 99.47 100.00 100.00 100.00 99.51 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.35 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Sema-1b,RI_chr2R_13565425_13565874 chr2R - chr2R_13566288_13566648 chr2R_13566287_13566288;chr2R_13566648_13566649 chr2R_13565777_13566287;chr2R_13566649_13566698 70.83 NA 70.00 63.64 NA NA 73.08 53.85 58.62 NA NA 68.42 100.00 53.85 NA 84.62 50.00 NA 73.33 57.89 NA 77.78 90.00 NA NA 66.67 NA NA NA 60.00 92.86 NA NA 72.22 78.57 70.00 NA NA NA 83.33 NA 66.67 90.00 66.67 NA 75.00 NA 83.33 70.83 NA 53.85 NA NA NA 80.00 NA NA NA K intron_retention foi,I_chr3L_8524905_8524976 chr3L + chr3L_8525975_8526040 chr3L_8525974_8525975;chr3L_8526040_8526041 chr3L_8524977_8525974;chr3L_8526041_8527112 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.80 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Dsp1,I_chrX_16231287_16231413 chrX + chrX_16227797_16228333 chrX_16227796_16227797;chrX_16228333_16228334 chrX_16227698_16227796;chrX_16228334_16228446 100.00 97.30 100.00 100.00 100.00 100.00 100.00 98.28 97.83 96.15 95.24 98.61 100.00 97.22 100.00 100.00 96.67 100.00 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 98.48 96.77 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 97.62 NA 100.00 100.00 96.97 98.61 96.97 100.00 100.00 95.24 100.00 97.22 100.00 100.00 100.00 K intron_retention RhoBTB,RI_chr3L_20370940_20371530,I_chr3L_20374844_20374891 chr3L + chr3L_20374393_20374667 chr3L_20374392_20374393;chr3L_20374667_20374668 chr3L_20374122_20374392;chr3L_20374668_20374821 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA NA 3.33 0.00 0.00 0.00 0.00 NA 0.00 NA 7.14 0.00 0.00 0.00 0.00 NA NA 3.70 NA 0.00 0.00 0.00 0.00 3.12 6.90 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 2.63 5.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG30428 chr2R + chr2R_21141602_21141650 chr2R_21141601_21141602;chr2R_21141650_21141651 chr2R_21141343_21141601;chr2R_21141651_21141695 16.00 NA NA 58.33 NA NA NA NA 4.76 NA NA 6.67 NA 20.00 NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 13.33 NA NA NA NA NA NA 16.00 NA NA NA NA NA NA NA NA NA K alternative_donor SPoCk,I_chr3L_22776339_22776519 chr3L + chr3L_22766817_22767837 chr3L_22766852_22767837 chr3L_22767838_22768237;chr3L_22766783_22766816 25.66 NA NA 25.00 NA NA 23.08 NA 26.32 15.38 NA 15.15 NA NA 27.27 NA NA NA 36.36 30.77 NA NA 40.00 NA NA NA 25.00 NA 55.56 NA 25.00 NA NA 14.29 21.43 55.56 25.00 NA NA 15.38 NA 23.81 NA NA NA NA NA 55.56 33.33 NA 41.67 NA NA NA 36.36 NA NA NA K jcn_only_AD CG14476,I_chrX_21474758_21476200,I_chrX_21475620_21475965 chrX - chrX_21475620_21476104;chrX_21475620_21476178 chrX_21475620_21476200 chrX_21475520_21475619;chrX_21476201_21476209 94.35 88.89 84.93 87.68 90.14 90.91 91.74 97.66 94.74 97.06 91.38 94.22 94.78 92.13 81.91 89.66 96.55 94.44 97.06 92.98 89.04 93.48 98.63 96.30 94.59 89.77 98.25 96.88 82.14 NA 95.70 NA NA 94.74 93.33 92.86 96.67 87.50 97.44 92.16 NA 93.05 90.14 95.45 NA 96.88 97.14 NA 95.09 96.61 94.12 98.18 92.86 91.30 94.35 96.77 97.14 95.00 K intron_retention SMC2,I_chr2R_10737857_10737917 chr2R - chr2R_10737615_10737667 chr2R_10737614_10737615;chr2R_10737667_10737668 chr2R_10736135_10737614;chr2R_10737668_10737856 0.00 0.00 0.00 0.00 0.00 3.45 1.72 0.00 2.27 NA 0.00 0.00 2.00 2.27 1.92 1.09 0.00 0.00 6.56 2.59 0.00 0.00 2.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 K jcn_only_AA CG7519 chr3L + chr3L_21486456_21486546 chr3L_21486456_21486519 chr3L_21486348_21486455;chr3L_21486547_21487010 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 98.15 100.00 100.00 98.70 100.00 100.00 100.00 98.68 100.00 100.00 100.00 100.00 100.00 97.83 98.48 100.00 98.53 99.01 100.00 100.00 100.00 100.00 98.72 100.00 98.63 100.00 98.39 100.00 98.94 100.00 98.18 100.00 99.26 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.28 99.55 K intron_retention noncoding_4282,RI_chr2L_22131700_22140718 chr2L + chr2L_22131700_22132117 chr2L_22131699_22131700;chr2L_22132117_22132118 chr2L_22131600_22131699;chr2L_22132118_22132177 96.43 96.97 96.15 96.43 100.00 95.45 94.37 98.21 96.10 83.33 88.46 100.00 100.00 96.15 100.00 98.21 92.86 95.00 100.00 98.53 100.00 NA 97.50 97.56 96.43 94.74 96.67 93.33 100.00 93.33 95.83 92.86 93.33 96.15 96.30 95.45 100.00 95.45 96.97 96.15 100.00 98.04 100.00 92.59 92.31 100.00 97.44 94.12 98.00 97.50 96.43 94.74 100.00 100.00 97.14 97.22 92.68 88.89 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2393243 chrX_2387249_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2392054;chrX_2392149_2392515;chrX_2392665_2393243 chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521;chrX_2392055_2392148;chrX_2392516_2392664 chrX_2387149_2387248;chrX_2393244_2393291 0.00 NA NA NA NA NA NA NA NA NA NA 2.70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor RpL17,I_chrX_6637182_6638207,RI_chrX_6637182_6637528,I_chrX_6637182_6637973,snoRNA:Psi28S-1232 chrX - chrX_6637182_6638228;chrX_6637182_6638141;chrX_6637182_6637982 chrX_6637182_6638178 chrX_6637093_6637181;chrX_6638229_6638235 2.13 2.86 2.50 3.70 4.08 2.56 4.44 0.00 2.86 2.27 0.00 3.28 0.00 3.12 4.44 3.03 3.57 2.17 2.56 1.14 2.78 0.86 2.78 4.88 0.00 2.13 2.33 1.85 3.23 1.14 2.08 0.92 0.57 4.44 0.00 1.89 6.25 3.57 1.85 0.42 0.00 2.22 2.56 0.93 1.72 0.00 0.00 0.00 1.89 4.08 0.00 4.76 0.67 2.70 2.00 0.00 1.15 0.58 K cassette l(3)82Fd,I_chr3R_1125296_1161435,I_chr3R_1125296_1175189,I_chr3R_1129905_1148709,I_chr3R_1129905_1160126,I_chr3R_1131693_1133665,I_chr3R_1147660_1148709 chr3R - chr3R_1125296_1138710 chr3R_1125296_1129832;chr3R_1129905_1138710 chr3R_1129833_1129904 chr3R_1125196_1125295;chr3R_1138711_1138751 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 91.67 100.00 100.00 NA 100.00 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention gish,I_chr3R_12125412_12126290 chr3R + chr3R_12125412_12126966 chr3R_12125411_12125412;chr3R_12126966_12126967 chr3R_12125394_12125411;chr3R_12126967_12127073 4.76 NA 8.70 13.33 NA NA NA NA 9.38 NA NA 2.70 NA 0.00 7.69 11.76 NA NA NA 5.81 NA 0.00 9.38 5.26 NA NA 10.53 40.00 0.00 0.00 NA NA 0.00 NA 17.65 0.00 3.70 0.00 6.67 6.25 0.00 15.00 NA 0.00 0.00 9.09 4.76 9.52 15.79 0.00 10.00 0.00 0.00 0.00 15.38 0.00 0.00 0.00 K intron_retention CG8121,RI_chr3R_5183458_5183705 chr3R + chr3R_5160975_5161221 chr3R_5160974_5160975;chr3R_5161221_5161222 chr3R_5160915_5160974;chr3R_5161222_5161357 23.21 NA NA 45.45 NA NA 36.36 NA 33.33 NA NA 20.00 NA NA NA 21.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA 14.29 NA NA NA 15.38 NA NA NA 7.14 30.77 NA NA NA NA NA NA NA NA NA K jcn_only_AD Rph,I_chrX_10647710_10648325,RI_chrX_10649048_10651427 chrX - chrX_10647710_10651427 chrX_10647710_10648325 chrX_10647610_10647709;chrX_10651428_10651527 13.34 NA 14.29 13.64 NA 4.55 0.00 23.08 13.04 NA NA 12.50 16.67 NA 15.15 NA NA 8.33 NA 8.70 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA 14.71 NA 9.09 NA NA NA NA 23.26 NA 15.00 NA NA NA 4.35 NA NA NA K intron_retention Nplp2,I_chr3L_13349726_13349896 chr3L + chr3L_13349953_13350107 chr3L_13349952_13349953;chr3L_13350107_13350108 chr3L_13349897_13349952;chr3L_13350108_13350349 0.03 0.02 0.02 0.04 0.00 0.01 0.05 0.04 0.04 0.00 0.04 0.03 0.03 0.05 0.03 0.04 0.04 0.02 0.03 0.02 0.03 0.05 0.03 0.02 0.00 0.03 0.04 0.04 0.04 0.02 0.03 0.03 0.00 0.04 0.02 0.10 0.03 0.00 0.03 0.04 0.01 0.03 0.05 0.00 0.04 0.06 0.01 0.05 0.04 0.02 0.00 0.02 0.07 0.03 0.04 0.03 0.04 0.05 K alternative_donor Dyb,I_chr2R_8338101_8339173,I_chr2R_8348603_8351844 chr2R + chr2R_8324915_8335263 chr2R_8325396_8335263 chr2R_8335264_8335605;chr2R_8324876_8324914 92.31 100.00 100.00 93.33 100.00 90.91 92.31 100.00 95.00 72.73 100.00 80.00 90.00 100.00 100.00 93.33 87.50 100.00 100.00 94.74 100.00 70.00 86.67 91.67 100.00 92.86 76.92 60.00 90.00 91.67 100.00 60.00 82.35 94.44 90.91 100.00 87.50 100.00 90.00 88.00 88.89 85.00 90.00 92.31 87.50 91.67 100.00 87.50 94.74 100.00 92.31 87.50 100.00 80.00 92.31 100.00 87.50 94.12 K jcn_only_AD RpS18,CG8908,EI_chr2R_16151918_16151997,I_chr2R_16151918_16152036,I_chr2R_16151938_16152065,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16151938_16151997;chr2R_16151918_16151997 chr2R_16151942_16151997 chr2R_16151998_16152066;chr2R_16151852_16151917 0.02 0.01 0.04 0.04 0.00 0.03 0.03 0.03 0.01 0.00 0.02 0.03 0.03 0.00 0.01 0.00 0.03 0.01 0.00 0.03 0.05 0.00 0.00 0.02 0.06 0.07 0.02 0.02 0.05 0.01 0.06 0.02 0.02 0.01 0.05 0.01 0.02 0.01 0.02 0.02 0.00 0.03 0.00 0.02 0.00 0.03 0.03 0.05 0.03 0.02 0.02 0.05 0.03 0.01 0.05 0.01 0.01 0.02 K alternative_acceptor AP-47,I_chr3R_5385123_5385196 chr3R - chr3R_5385123_5385196 chr3R_5385134_5385196 chr3R_5385197_5385206;chr3R_5385023_5385122 100.00 100.00 96.30 97.67 100.00 100.00 97.56 97.67 100.00 95.65 100.00 97.92 100.00 100.00 96.43 100.00 96.43 100.00 97.14 98.44 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 97.50 95.24 95.65 97.14 96.97 100.00 100.00 100.00 100.00 100.00 95.65 100.00 96.15 97.30 100.00 97.50 100.00 95.65 97.87 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 96.55 K cassette CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4985425_4985861 chr2L_4985425_4985732;chr2L_4985763_4985861 chr2L_4985733_4985762 chr2L_4985358_4985424;chr2L_4985862_4985954 0.00 0.00 2.17 1.67 0.00 3.12 0.00 1.27 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 1.32 0.00 0.00 2.13 0.00 NA 1.92 1.89 0.00 1.82 0.00 0.00 1.39 1.54 0.00 1.49 3.12 1.96 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Mbs,I_chr3L_16045251_16046108,I_chr3L_16057100_16057329 chr3L + chr3L_16056274_16056985 chr3L_16056274_16056642;chr3L_16056838_16056985 chr3L_16056643_16056837 chr3L_16056188_16056273;chr3L_16056986_16057097 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Dp,I_chr2R_9111166_9112971,REI_chr2R_9113257_9113316 chr2R + chr2R_9112640_9112971 chr2R_9112639_9112640;chr2R_9112971_9112972 chr2R_9112620_9112639;chr2R_9112972_9113071 100.00 100.00 100.00 94.44 100.00 NA 100.00 100.00 95.45 100.00 NA 100.00 100.00 NA 91.67 92.31 100.00 100.00 100.00 94.44 NA 100.00 89.47 93.75 100.00 100.00 94.12 91.67 100.00 90.91 92.86 100.00 100.00 100.00 NA 100.00 94.12 NA 100.00 100.00 87.50 93.75 88.89 92.86 100.00 100.00 NA 100.00 93.33 100.00 100.00 100.00 100.00 NA 100.00 NA 88.89 90.00 K jcn_only_AD CG18766,I_chr3R_23069667_23070256,I_chr3R_23069667_23070318,RI_chr3R_23069667_23070361,I_chr3R_23069667_23070365 chr3R - chr3R_23069667_23070732;chr3R_23069667_23070911 chr3R_23069667_23070738 chr3R_23069567_23069666;chr3R_23070912_23070951 86.21 92.16 82.72 83.33 76.47 75.47 80.31 82.61 80.61 92.00 87.50 78.81 78.26 84.15 72.60 80.00 88.24 83.08 86.49 83.02 72.41 77.78 91.25 82.35 94.34 92.16 92.96 91.67 82.22 90.00 89.66 72.92 80.88 79.51 86.21 90.77 86.89 90.91 90.20 81.43 89.06 77.60 80.00 78.69 73.21 93.46 86.57 90.77 83.94 90.79 86.75 89.13 87.18 89.47 79.78 90.41 89.33 93.10 K multi_cassette CG40263,F_chr2RHet_1265687_1293040,F_chr2RHet_1298459_1298703,F_chr2RHet_1298459_1311408,F_chr2RHet_1298885_1299622,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1265687_1324445 chr2RHet_1265687_1286305;chr2RHet_1286572_1293055;chr2RHet_1293175_1293235;chr2RHet_1293394_1324445 chr2RHet_1286306_1286571;chr2RHet_1293056_1293174;chr2RHet_1293236_1293393 chr2RHet_1265587_1265686;chr2RHet_1324446_1324530 45.74 43.75 50.00 36.36 55.56 42.11 40.00 46.03 50.00 50.00 NA 42.86 60.00 58.82 61.11 43.75 71.43 66.67 54.55 82.61 50.00 33.33 41.67 37.50 29.41 40.00 66.67 20.00 22.22 71.43 66.67 42.86 28.57 56.41 33.33 22.22 50.00 60.00 45.45 63.16 12.50 55.88 53.33 53.33 20.00 36.84 42.86 80.00 51.52 18.18 64.71 50.00 22.22 40.00 75.00 35.71 25.00 16.67 K jcn_only_AD SNF4Agamma,I_chr3R_16982134_16982890 chr3R + chr3R_17005113_17011269 chr3R_17011031_17011269 chr3R_17011270_17011306 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 NA K intron_retention Upf2,I_chrX_7969268_7969358,I_chrX_7969312_7969358 chrX - chrX_7969303_7969358 chrX_7969302_7969303;chrX_7969358_7969359 chrX_7969212_7969302;chrX_7969359_7969458 86.60 NA NA 90.91 NA 87.50 75.00 100.00 85.71 NA NA 75.00 NA NA 90.00 94.44 NA 90.00 100.00 92.86 NA 53.33 100.00 88.89 NA 78.57 100.00 100.00 NA NA 57.14 NA NA 88.24 NA NA 63.64 NA NA 76.92 NA 76.92 77.78 NA NA NA NA 66.67 65.00 NA NA NA NA NA 76.92 NA NA NA K intron_retention cenG1A,RI_chr2L_13836433_13850514 chr2L + chr2L_13879707_13891299 chr2L_13879706_13879707;chr2L_13891299_13891300 chr2L_13879565_13879706;chr2L_13891300_13891532 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 8.33 1.96 0.00 0.00 NA 0.00 0.00 NA 8.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA NA NA K intron_retention CG1707,I_chr2R_3281467_3281526 chr2R - chr2R_3281467_3282935 chr2R_3281466_3281467;chr2R_3282935_3282936 chr2R_3281367_3281466;chr2R_3282936_3283022 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA eIF-4a,I_chr2L_5985221_5985289 chr2L + chr2L_5985221_5985289;chr2L_5985221_5985342 chr2L_5985221_5985338 chr2L_5985121_5985220;chr2L_5985343_5985389 98.84 98.70 99.02 98.64 99.05 98.86 98.45 98.96 98.62 98.93 98.98 98.73 99.08 99.19 98.57 98.62 98.79 98.44 98.64 99.03 98.97 99.32 98.88 98.80 99.04 98.84 98.58 99.02 98.70 99.45 98.81 98.84 98.91 98.76 98.95 99.09 98.40 99.07 98.69 99.38 98.92 98.83 98.48 98.83 98.52 99.18 98.97 98.79 98.93 98.89 98.86 98.67 98.60 98.59 98.67 98.85 98.77 99.00 K jcn_only_AD Imp,I_chrX_10699490_10700695,RI_chrX_10699665_10700501,RI_chrX_10699665_10700695 chrX - chrX_10699503_10700474;chrX_10699503_10700695 chrX_10699503_10700501 chrX_10699299_10699502;chrX_10700696_10700795 64.28 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 61.90 NA NA NA NA NA NA NA NA NA K jcn_only_AA Plc21C,I_chr2L_343730_344038 chr2L + chr2L_344490_344575 chr2L_344490_344554 chr2L_344042_344489;chr2L_344576_344947 35.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 35.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG14657 chr3R - chr3R_645460_645515 chr3R_645459_645460;chr3R_645515_645516 chr3R_643732_645459;chr3R_645516_645632 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 8.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_150069_150307;chr4_150069_150180;chr4_150069_150378;chr4_150069_150295;chr4_150069_150205 chr4_150069_150353 chr4_149969_150068;chr4_150379_150379 10.29 NA NA 8.77 6.67 9.52 9.76 18.52 6.52 NA NA 12.50 3.33 0.00 12.50 6.67 11.63 9.52 9.26 12.96 NA NA NA NA NA 23.08 NA NA NA NA 20.51 NA NA 15.58 NA NA NA NA NA NA NA 22.81 0.00 NA NA NA NA NA 15.07 NA NA NA NA NA 10.81 NA NA NA K jcn_only_AD CREF_chr3R_5589662_5589762,CG8500 chr3R + chr3R_5610483_5611473 chr3R_5610546_5611473 chr3R_5611474_5611635;chr3R_5610477_5610482 0.00 NA 0.00 0.00 NA NA 4.76 0.00 0.00 NA NA 0.00 0.00 4.35 0.00 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 2.44 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K alternative_donor sdk,I_chrX_581050_581605,I_chrX_581108_581660,I_chrX_625220_634459,I_chrX_636395_636562 chrX + chrX_581043_581605;chrX_581108_581605;chrX_580974_581605 chrX_581160_581605 chrX_581606_581705;chrX_580950_580973 16.67 25.00 22.22 11.11 NA 16.67 27.27 16.67 22.22 0.00 NA 18.18 0.00 20.00 0.00 16.67 25.00 NA 33.33 12.50 0.00 30.00 12.50 25.00 50.00 NA 28.57 25.00 14.29 44.44 12.50 NA 5.00 16.67 12.50 22.22 0.00 20.00 25.00 7.14 NA 25.00 0.00 12.50 NA 0.00 25.00 11.76 33.33 NA 11.11 25.00 NA NA 33.33 NA NA 16.67 K intron_retention spir,I_chr2L_20334199_20334626,I_chr2L_20336550_20339058 chr2L + chr2L_20345260_20345524 chr2L_20345259_20345260;chr2L_20345524_20345525 chr2L_20345192_20345259;chr2L_20345525_20345670 14.29 6.90 3.23 26.92 25.00 11.11 23.08 28.57 18.87 NA 20.00 14.29 14.29 13.04 18.75 27.78 9.52 14.81 18.18 18.92 16.67 14.77 10.91 11.43 17.65 3.70 4.65 25.64 13.64 21.74 19.15 NA 21.43 19.35 6.67 10.53 4.26 7.41 6.67 18.18 12.50 13.21 30.77 16.13 11.76 19.05 13.79 NA 17.39 10.71 11.90 5.88 NA 0.00 24.24 9.52 3.85 NA N jcn_only_AD scro chr3LHet + chr3LHet_223864_224236;chr3LHet_217520_224236 chr3LHet_211841_224236 chr3LHet_224237_224245 2.08 NA NA 13.64 NA NA NA 4.17 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG17385,I_chr2R_10298790_10298843 chr2R - chr2R_10298790_10298841;chr2R_10298790_10298843 chr2R_10298790_10298847 chr2R_10298690_10298789;chr2R_10298848_10298916 99.61 98.77 99.61 99.06 100.00 100.00 99.67 99.68 100.00 99.57 99.49 99.77 100.00 99.45 99.59 98.77 100.00 99.06 99.55 99.56 99.52 100.00 99.33 99.66 99.45 99.16 100.00 99.65 99.77 99.37 98.82 100.00 100.00 99.68 99.53 99.60 99.16 100.00 99.70 99.59 99.74 98.90 100.00 100.00 99.60 99.65 100.00 99.85 99.50 99.22 100.00 99.46 100.00 99.58 100.00 99.64 99.35 99.25 K intron_retention CG17683,I_chr2R_18774_18869 chr2R + chr2R_18630_18680 chr2R_18629_18630;chr2R_18680_18681 chr2R_18552_18629;chr2R_18681_18747 25.00 NA NA 55.00 NA NA 20.00 15.38 31.82 NA NA 15.38 NA 54.55 NA 26.09 NA NA NA 40.91 NA NA 21.05 30.77 NA NA 50.00 41.67 NA NA 10.53 NA NA 36.36 25.00 46.15 NA NA NA 25.00 NA 14.29 NA 10.53 NA NA 25.00 NA 24.00 NA 38.89 NA NA NA NA NA 25.00 NA K jcn_only_AA Gbeta13F,I_chrX_15754284_15755167,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15754284_15755172;chrX_15754284_15755148;chrX_15754284_15755021;chrX_15754284_15755184;chrX_15754284_15755409;chrX_15754284_15755256;chrX_15754284_15754777;chrX_15754284_15755268 chrX_15754284_15755416 chrX_15754256_15754283 0.91 1.69 1.53 0.92 1.02 0.00 0.80 0.41 1.18 0.00 0.00 0.80 1.61 0.67 0.85 1.06 2.75 0.00 0.00 1.37 1.16 0.00 0.00 2.70 2.04 0.83 0.00 1.69 1.49 0.00 0.56 0.00 1.22 0.77 0.00 0.93 2.02 2.17 2.17 2.04 1.35 0.46 0.78 2.41 0.00 0.00 1.00 0.91 0.00 0.00 0.00 1.36 0.00 1.19 0.00 2.04 2.54 1.23 K jcn_only_AD CG2118,I_chr3R_27619193_27619598 chr3R - chr3R_27619193_27619598 chr3R_27619193_27619299 chr3R_27619093_27619192;chr3R_27619599_27619627 100.00 97.30 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 97.67 100.00 100.00 100.00 96.00 100.00 100.00 NA 100.00 100.00 100.00 94.59 100.00 NA NA NA 100.00 NA NA 97.87 NA NA 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA 98.53 NA 100.00 NA NA NA 100.00 100.00 NA NA K jcn_only_AD kst,I_chr3L_3367008_3367514 chr3L + chr3L_3366963_3367514;chr3L_3367011_3367514;chr3L_3367008_3367514;chr3L_3366774_3367514 chr3L_3367216_3367514 chr3L_3367515_3367614 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 K intron_retention CanB2,CG12825 chr2R + chr2R_3675038_3675095 chr2R_3675037_3675038;chr2R_3675095_3675096 chr2R_3674969_3675037;chr2R_3675096_3675170 1.75 0.00 1.38 3.33 1.72 1.75 1.10 1.96 2.21 0.00 3.23 3.20 1.98 1.64 0.00 0.96 3.31 0.85 2.96 1.26 1.52 1.89 1.48 1.64 6.32 4.48 2.70 4.49 12.00 0.72 1.29 1.75 2.56 1.75 3.92 3.31 1.50 0.94 3.33 2.21 1.83 3.15 1.72 1.45 0.00 1.90 3.23 2.56 1.51 1.61 1.35 0.00 0.00 4.59 1.26 3.49 2.01 0.96 K alternative_acceptor fra chr2R + chr2R_8445281_8445922;chr2R_8445281_8446375 chr2R_8445281_8445949 chr2R_8445263_8445280;chr2R_8446376_8446583 33.33 60.00 27.27 22.22 25.00 25.00 40.00 42.86 33.33 20.00 33.33 25.00 14.29 14.29 11.11 10.00 37.50 12.50 11.11 33.33 40.00 33.33 44.44 38.46 66.67 20.00 55.56 25.00 50.00 36.36 25.00 40.00 43.75 14.29 30.00 50.00 20.00 37.50 45.45 47.06 80.00 17.65 14.29 45.45 60.00 66.67 25.00 14.29 23.53 40.00 52.94 40.00 25.00 33.33 20.00 57.14 NA 72.73 K alternative_donor cav chr3R + chr3R_20047648_20048064;chr3R_20047349_20048064 chr3R_20047476_20048064 chr3R_20048065_20048196;chr3R_20047247_20047348 40.00 NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor pps chr3R + chr3R_8242305_8242369 chr3R_8242311_8242369 chr3R_8242370_8242851;chr3R_8240593_8242304 97.50 96.67 100.00 96.55 94.74 100.00 96.43 97.14 97.73 96.55 94.12 95.45 100.00 95.65 100.00 96.30 95.00 95.45 100.00 96.67 95.00 97.37 98.18 97.50 100.00 94.74 100.00 93.18 100.00 97.78 100.00 96.97 98.51 100.00 96.77 100.00 97.47 97.50 100.00 97.14 100.00 97.62 100.00 97.62 97.44 97.87 96.30 98.91 97.67 100.00 100.00 95.45 100.00 96.15 100.00 96.30 95.65 97.37 K intron_retention cryptocephal,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21318420_21318484 chr2L_21318419_21318420;chr2L_21318484_21318485 chr2L_21318351_21318419;chr2L_21318485_21318548 0.10 0.00 0.00 0.30 0.15 0.00 0.23 0.30 0.06 0.00 0.00 0.13 0.00 0.00 0.23 0.14 0.00 0.00 0.00 0.12 0.15 0.00 0.00 0.13 0.32 0.00 0.51 1.39 0.00 0.18 0.10 0.00 0.31 0.34 0.00 0.00 0.14 0.00 0.00 0.29 0.00 0.14 0.19 0.11 0.00 0.37 0.17 0.00 0.00 0.15 0.26 0.00 0.00 0.00 0.10 0.16 0.15 0.00 K jcn_only_AD Atg18,I_chr3L_8182683_8182941 chr3L + chr3L_8180503_8180578;chr3L_8180294_8180578 chr3L_8180319_8180578 chr3L_8180579_8180676;chr3L_8180118_8180293 4.48 6.82 2.41 5.07 3.03 4.35 2.86 10.81 4.09 4.88 0.00 2.99 3.03 2.86 4.67 7.45 9.76 4.48 6.67 8.11 3.41 4.20 3.05 0.93 3.95 4.55 6.00 7.69 13.85 3.09 5.50 4.08 9.82 6.72 6.49 3.64 1.63 0.87 5.56 6.87 8.33 6.15 5.08 4.81 1.22 4.35 3.00 7.53 5.81 4.23 2.88 6.90 4.69 2.94 5.17 2.60 0.88 2.06 K alternative_acceptor Usp7,I_chrX_11919055_11919146,I_chrX_11922059_11922456 chrX - chrX_11919079_11919146;chrX_11919091_11919146 chrX_11919055_11919146 chrX_11919147_11919211;chrX_11918989_11919054 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.88 0.00 0.00 0.00 0.00 0.00 0.00 1.35 1.92 0.00 0.00 1.01 0.00 0.00 0.00 2.04 2.56 2.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 2.78 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 3.45 0.00 2.13 0.00 0.00 0.00 0.00 3.45 5.26 0.00 1.54 0.00 2.13 0.00 K jcn_only_AA RI_chr2L_8218680_8218853,Pvr,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8223345_8223824 chr2L_8223450_8223824 chr2L_8223825_8223937;chr2L_8223254_8223344 100.00 100.00 100.00 99.68 100.00 100.00 99.81 99.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.39 99.87 100.00 100.00 99.61 100.00 100.00 99.65 100.00 99.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.59 K jcn_only_AA I_chr3R_25628402_25628511,ncd,I_chr3R_25632049_25632125,RI_chr3R_25658089_25658914 chr3R - chr3R_25632049_25632125 chr3R_25632067_25632125 chr3R_25632126_25632194;chr3R_25631983_25632048 99.71 99.68 98.95 99.09 100.00 100.00 99.26 99.53 99.74 99.12 99.34 99.72 100.00 100.00 99.49 99.21 99.37 100.00 100.00 99.72 100.00 98.01 98.40 99.42 99.52 100.00 100.00 100.00 100.00 100.00 99.14 99.19 100.00 99.60 99.47 98.77 99.60 99.68 99.76 99.17 98.51 99.47 98.80 100.00 99.65 100.00 100.00 100.00 99.71 100.00 99.72 100.00 100.00 98.89 100.00 100.00 100.00 99.56 N intron_retention lola,I_chr2R_6380094_6419543,I_chr2R_6380747_6419543,I_chr2R_6394546_6419543,RI_chr2R_6403557_6403850,I_chr2R_6403557_6406705,I_chr2R_6404486_6419543,R_chr2R_6408775_6419537,I_chr2R_6409616_6419543,I_chr2R_6413368_6414281,I_chr2R_6419625_6419686,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6398510_6403339 chr2R_6398509_6398510;chr2R_6403339_6403340 chr2R_6398477_6398509;chr2R_6403340_6403556 63.16 NA 100.00 51.92 NA NA 53.66 70.00 69.23 NA 46.67 100.00 63.16 100.00 71.43 75.86 100.00 29.41 100.00 64.71 100.00 44.44 100.00 43.75 38.89 28.57 100.00 NA 17.39 37.50 100.00 NA 100.00 100.00 NA NA 50.00 NA 42.11 39.13 27.78 100.00 NA 56.25 19.05 30.77 NA 50.00 66.67 NA 100.00 NA NA NA 62.50 NA NA NA K alternative_acceptor CG7375 chr3L - chr3L_8190803_8190878 chr3L_8190806_8190878 chr3L_8190879_8190964;chr3L_8190622_8190802 6.25 7.02 7.14 9.28 4.65 5.88 7.14 5.81 4.85 3.85 4.26 9.33 6.12 3.77 6.25 5.00 6.52 7.32 6.25 7.37 6.12 1.49 6.82 1.82 8.89 10.53 14.29 7.32 19.44 2.70 8.06 5.77 6.00 5.48 11.76 4.76 8.47 5.00 8.16 4.84 6.82 9.78 2.08 6.35 7.50 10.00 3.33 2.94 5.10 8.05 6.56 7.89 4.65 5.56 3.57 1.67 7.46 8.22 K intron_retention I_chrX_16309561_16309689,hang,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16323441_16324653 chrX_16323440_16323441;chrX_16324653_16324654 chrX_16323093_16323440;chrX_16324654_16324797 16.42 15.94 9.21 15.38 14.29 11.76 18.42 8.53 19.39 16.33 8.33 15.13 18.18 23.19 17.11 23.15 16.98 16.22 9.46 16.76 9.86 36.28 11.11 13.25 22.08 12.31 13.89 18.31 22.97 19.39 11.76 22.50 20.54 11.97 20.37 21.79 17.46 18.95 15.15 18.02 4.55 15.69 11.29 17.86 20.59 14.00 15.56 17.58 16.42 14.29 14.40 22.00 15.56 27.27 13.58 18.75 19.35 18.52 K alternative_acceptor RpL11,I_chr2R_15330246_15330292,I_chr2R_15330603_15330817 chr2R + chr2R_15330246_15330305;chr2R_15330246_15330317 chr2R_15330246_15330292 chr2R_15330177_15330245;chr2R_15330318_15330383 0.04 0.03 0.04 0.05 0.05 0.04 0.05 0.07 0.02 0.06 0.04 0.02 0.05 0.06 0.03 0.06 0.00 0.00 0.00 0.04 0.09 0.08 0.02 0.02 0.11 0.00 0.05 0.13 0.36 0.11 0.15 0.00 0.04 0.00 0.05 0.08 0.00 0.07 0.03 0.06 0.07 0.02 0.00 0.00 0.05 0.03 0.05 0.05 0.06 0.06 0.03 0.00 0.02 0.05 0.04 0.02 0.00 0.10 K intron_retention Mkk4 chr3R - chr3R_4475142_4475199 chr3R_4475141_4475142;chr3R_4475199_4475200 chr3R_4475001_4475141;chr3R_4475200_4476041 0.00 0.00 0.00 2.25 0.00 0.00 0.00 1.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.91 1.23 2.38 0.00 0.00 1.72 4.17 0.00 3.28 0.00 0.00 0.00 0.00 2.86 0.00 1.12 0.94 1.00 4.17 1.68 0.00 0.00 0.00 2.67 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 2.15 1.56 K intron_retention CG5854,RI_chr3R_19760655_19760703 chr3R + chr3R_19760655_19760750 chr3R_19760654_19760655;chr3R_19760750_19760751 chr3R_19760555_19760654;chr3R_19760751_19760803 0.98 0.87 2.66 1.70 0.00 1.43 0.98 1.75 1.05 1.03 1.54 1.54 0.00 0.00 2.55 0.00 0.00 0.00 0.00 1.91 1.38 1.64 0.60 1.75 0.00 1.38 3.00 3.88 2.60 0.64 2.52 0.69 0.00 1.17 0.00 1.22 0.80 0.77 1.59 1.49 0.96 1.18 0.00 0.00 1.32 0.55 0.00 1.95 1.81 0.90 0.70 0.66 1.15 0.70 0.00 0.47 0.79 0.98 K intron_retention wts chr3R - chr3R_26617358_26617418 chr3R_26617357_26617358;chr3R_26617418_26617419 chr3R_26617162_26617357;chr3R_26617419_26617497 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 3.33 2.78 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention AnnIX,I_chr3R_16895383_16895999 chr3R + chr3R_16894742_16896445 chr3R_16894741_16894742;chr3R_16896445_16896446 chr3R_16894560_16894741;chr3R_16896446_16896495 7.46 5.76 7.41 4.48 3.59 6.60 6.53 4.88 5.28 13.33 6.71 11.41 22.73 7.95 6.90 10.58 6.15 5.10 6.05 11.37 5.39 9.17 8.55 8.16 13.38 6.35 9.03 21.43 9.33 7.32 9.45 9.32 8.75 7.11 10.27 15.65 4.08 6.52 6.98 15.48 10.12 5.08 7.84 7.11 3.43 7.67 5.44 13.33 7.71 5.76 6.93 8.00 15.97 7.46 8.47 6.58 7.02 18.75 K jcn_only_AD Dystrophin,noncoding_17759,I_chr3R_15289404_15290179 chr3R + chr3R_15289362_15290221;chr3R_15289437_15290221 chr3R_15289404_15290221 chr3R_15290222_15290279;chr3R_15289350_15289361 65.22 NA NA NA NA NA NA 69.57 NA NA NA 78.26 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.87 NA NA NA NA NA NA NA NA NA K alternative_donor foi,I_chr3L_8524905_8524976 chr3L + chr3L_8521881_8523659 chr3L_8521898_8523659 chr3L_8523660_8524249;chr3L_8521860_8521880 17.35 NA 15.38 17.39 11.76 20.00 38.46 13.95 18.00 NA 17.24 24.24 NA 15.38 26.09 16.67 13.04 40.00 28.00 16.67 25.93 35.29 NA NA NA 11.11 NA NA 42.86 NA 17.54 13.33 9.52 18.18 NA NA NA NA NA NA NA 17.31 11.76 NA NA NA NA 18.52 18.60 NA NA NA NA NA 12.50 NA NA 15.79 N alternative_donor MB8.chr3R.pasa.66,alpha-Est10,I_chr3R_3314337_3319450 chr3R - chr3R_3314337_3317062 chr3R_3314337_3314410 chr3R_3314237_3314336;chr3R_3317063_3317412 12.50 11.11 11.11 20.00 0.00 10.00 23.53 12.50 10.71 5.88 NA 14.29 7.69 22.22 12.50 18.18 9.09 14.29 7.69 12.50 10.00 50.00 21.43 14.29 12.50 9.09 18.18 33.33 20.00 22.22 12.50 0.00 9.09 12.50 22.22 25.00 5.88 10.00 14.29 12.50 12.50 9.52 10.00 4.00 NA 6.67 0.00 14.29 25.00 10.00 12.50 9.09 33.33 NA 11.11 8.33 9.09 33.33 K alternative_acceptor msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585739_2586402;chr3L_2585716_2586402 chr3L_2585733_2586402 chr3L_2586403_2586502;chr3L_2585639_2585715 4.35 4.55 6.98 1.74 7.14 8.00 3.64 4.64 2.56 0.00 4.76 2.16 2.63 2.41 2.17 4.10 5.26 4.48 2.30 4.29 5.56 5.97 6.49 3.39 0.00 2.53 3.45 7.41 4.35 3.77 3.30 10.71 8.33 3.62 3.28 5.08 8.00 4.35 3.85 3.81 4.44 3.80 7.25 3.03 7.69 1.89 6.90 6.14 4.35 9.52 5.62 4.17 10.00 9.52 2.97 5.41 4.55 6.25 K intron_retention CG42354,CG42353 chrX - chrX_15989427_15989490 chrX_15989426_15989427;chrX_15989490_15989491 chrX_15989002_15989426;chrX_15989491_15989723 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 2.67 6.35 5.66 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32549,I_chrX_18286136_18286367,I_chrX_18286289_18286367,RI_chrX_18301919_18303082 chrX - chrX_18286000_18286072 chrX_18285999_18286000;chrX_18286072_18286073 chrX_18285031_18285999;chrX_18286073_18286135 0.00 0.00 0.00 0.76 0.00 0.00 1.30 0.00 1.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 1.66 0.85 0.00 0.00 0.00 0.74 2.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 1.16 0.73 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD mys,I_chrX_7958795_7961094 chrX + chrX_7955904_7957872;chrX_7955914_7957872;chrX_7955759_7957872;chrX_7956114_7957872;chrX_7955901_7957872;chrX_7956125_7957872;chrX_7955967_7957872 chrX_7955908_7957872 chrX_7957873_7958492;chrX_7955741_7955758 2.90 5.44 2.26 1.80 1.10 2.45 3.32 2.61 2.54 3.42 1.32 1.88 1.54 4.12 2.20 1.78 0.47 2.23 3.21 1.96 1.79 1.70 7.17 6.38 5.88 4.08 4.19 5.06 2.90 5.48 1.51 1.79 1.47 1.40 5.71 5.66 3.77 5.30 3.88 4.21 4.24 2.89 2.63 2.04 4.02 1.96 4.92 2.29 3.58 5.06 4.90 4.65 2.41 5.17 2.86 1.14 5.88 4.22 K alternative_donor CG3287,I_chr2R_2698891_2699406,I_chr2R_2700203_2700285 chr2R + chr2R_2698681_2699406;chr2R_2699349_2699406;chr2R_2698654_2699406 chr2R_2698891_2699406 chr2R_2699407_2699506;chr2R_2698533_2698653 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 1.33 0.00 0.00 0.00 0.00 0.00 1.45 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Hexo1,F_chr3L_4292778_4292830 chr3L + chr3L_4291051_4291112 chr3L_4291050_4291051;chr3L_4291112_4291113 chr3L_4289961_4291050;chr3L_4291113_4291211 100.00 97.44 100.00 100.00 100.00 100.00 98.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 K jcn_only_AD Ncc69,I_chr3L_12364701_12364860 chr3L - chr3L_12369216_12369549 chr3L_12369216_12369536 chr3L_12369101_12369215;chr3L_12369550_12369716 96.55 100.00 94.12 100.00 100.00 96.67 NA 96.15 95.56 NA 100.00 96.67 100.00 100.00 100.00 100.00 NA 96.67 96.67 97.33 100.00 NA 93.33 96.88 NA 95.00 96.15 NA NA 96.00 81.08 NA 97.67 97.92 96.15 95.24 100.00 95.35 92.00 95.92 NA 96.30 96.43 97.73 NA NA NA 94.00 91.67 92.00 96.15 NA 86.21 NA 93.02 100.00 NA 96.67 K intron_retention mbf1,RI_chr3L_16568077_16568816 chr3L + chr3L_16568077_16568286 chr3L_16568076_16568077;chr3L_16568286_16568287 chr3L_16567977_16568076;chr3L_16568287_16568447 5.09 4.26 4.63 5.09 4.79 5.77 8.15 5.47 6.36 3.21 5.56 7.59 7.59 9.32 6.35 5.84 6.61 5.34 7.65 3.72 4.69 22.30 4.77 4.77 5.08 9.60 6.69 4.87 8.53 4.82 4.52 4.33 5.45 4.78 5.37 5.52 5.34 4.57 5.18 4.17 4.37 6.14 5.76 6.00 3.36 2.83 3.28 2.94 4.01 5.66 5.57 4.59 2.52 3.85 6.90 4.42 3.12 1.78 K intron_retention CG17082,R_chr2R_642176_644740,I_chr2R_644094_644145,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_643765_643820 chr2R_643764_643765;chr2R_643820_643821 chr2R_643676_643764;chr2R_643821_644093 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 23.53 0.00 0.00 0.00 NA 0.00 0.00 9.09 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 K intron_retention px,RI_chr2R_18424832_18424969,I_chr2R_18442663_18442722,RI_chr2R_18448648_18449438,R_chr2R_18448676_18449403 chr2R - chr2R_18428483_18442722 chr2R_18428482_18428483;chr2R_18442722_18442723 chr2R_18428263_18428482;chr2R_18442723_18442822 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K alternative_donor mei-218,mei-217 chrX - chrX_17035515_17036834 chrX_17035515_17035726 chrX_17035359_17035514;chrX_17036835_17036969 100.00 100.00 87.50 87.50 83.33 100.00 100.00 88.89 100.00 100.00 100.00 92.31 100.00 100.00 100.00 85.71 100.00 85.71 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG1673 chrX + chrX_13294195_13294262 chrX_13294194_13294195;chrX_13294262_13294263 chrX_13294040_13294194;chrX_13294263_13295313 2.53 1.95 2.49 4.40 2.17 2.35 2.28 2.23 2.64 1.44 1.75 2.53 3.95 4.17 3.34 3.51 2.47 1.87 3.31 2.70 2.11 6.59 3.46 2.65 2.82 3.03 10.31 14.29 3.12 2.94 1.99 2.94 3.60 2.33 2.05 1.33 2.99 1.98 2.00 3.88 6.40 2.27 2.82 2.30 1.15 2.68 1.13 2.48 3.80 2.91 2.65 2.91 0.00 2.06 0.98 2.48 1.28 2.22 K intron_retention cdc2c,RI_chr3R_16562395_16562445 chr3R + chr3R_16562652_16562706 chr3R_16562651_16562652;chr3R_16562706_16562707 chr3R_16562454_16562651;chr3R_16562707_16562906 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.66 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.61 0.00 0.00 0.00 0.00 0.00 0.00 19.57 16.67 30.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 4.21 0.00 0.00 0.00 0.00 1.69 5.56 0.00 0.00 0.00 K intron_retention cbt,I_chr2L_478205_479086 chr2L - chr2L_478205_479406 chr2L_478204_478205;chr2L_479406_479407 chr2L_478105_478204;chr2L_479407_479935 8.42 12.96 7.84 8.86 5.26 9.52 7.89 14.29 7.52 9.68 4.62 12.09 9.21 5.77 15.15 11.11 10.26 10.81 9.38 6.57 10.00 4.62 6.56 8.33 6.00 12.50 11.27 20.37 14.04 10.61 12.73 11.63 8.16 13.68 6.90 7.02 4.08 0.00 10.42 9.46 6.02 8.42 5.00 10.53 3.57 12.66 7.41 15.31 8.73 6.15 2.67 4.26 4.29 3.92 12.33 3.92 2.70 5.67 K alternative_donor CG4365 chr3L + chr3L_20792089_20792242;chr3L_20791819_20792242;chr3L_20792100_20792242;chr3L_20792077_20792242 chr3L_20791960_20792242 chr3L_20792243_20793181;chr3L_20791802_20791818 0.00 0.00 0.00 6.45 0.00 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14184,I_chr3L_20021160_20021210,I_chr3L_20021910_20021979 chr3L - chr3L_20021286_20021344 chr3L_20021285_20021286;chr3L_20021344_20021345 chr3L_20021215_20021285;chr3L_20021345_20021478 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 4.76 16.07 0.00 0.00 10.20 0.00 1.37 0.00 0.00 0.00 0.00 5.66 0.00 0.00 2.13 0.00 11.76 1.55 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 1.82 0.00 0.00 0.00 2.15 0.00 K intron_retention RhoGAP5A,C_chrX_5514320_5515557 chrX - chrX_5511820_5511890 chrX_5511819_5511820;chrX_5511890_5511891 chrX_5511342_5511819;chrX_5511891_5512513 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 3.70 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG10338,I_chr2L_18697359_18697402 chr2L + chr2L_18697359_18697420 chr2L_18697359_18697402 chr2L_18697259_18697358;chr2L_18697421_18697502 0.00 NA 0.00 4.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 K alternative_donor CG17078 chr2L - chr2L_276904_276973 chr2L_276904_276958 chr2L_276739_276903;chr2L_276974_277212 88.89 92.86 85.71 91.67 83.33 91.67 86.67 82.35 88.57 NA 86.67 95.24 91.67 90.91 88.89 91.67 92.31 91.67 91.67 80.56 88.89 83.33 80.95 84.21 88.89 90.91 88.89 76.92 93.33 93.75 100.00 83.33 82.76 88.24 78.57 83.33 90.48 87.50 86.67 84.62 91.67 95.45 100.00 94.44 95.00 92.31 NA 96.30 86.36 100.00 76.47 88.89 85.71 NA 100.00 80.00 100.00 95.83 K alternative_acceptor RpL11,I_chr2R_15330246_15330292,I_chr2R_15330603_15330817 chr2R + chr2R_15330246_15330305;chr2R_15330246_15330292 chr2R_15330246_15330317 chr2R_15330177_15330245;chr2R_15330318_15330383 0.00 0.00 0.04 0.00 0.05 0.00 0.00 0.03 0.00 0.06 0.00 0.00 0.00 0.00 0.03 0.00 0.06 0.00 0.05 0.02 0.04 0.00 0.02 0.02 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.03 0.04 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.03 0.00 0.02 0.02 0.00 0.00 0.02 0.00 K intron_retention CG6073 chr3R - chr3R_22013997_22014053 chr3R_22013996_22013997;chr3R_22014053_22014054 chr3R_22013493_22013996;chr3R_22014054_22014241 0.00 NA 0.00 6.25 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 2.60 K intron_retention Elp3 chr2L + chr2L_4444833_4444894 chr2L_4444832_4444833;chr2L_4444894_4444895 chr2L_4444769_4444832;chr2L_4444895_4444963 42.14 45.45 37.04 18.18 44.00 50.00 33.33 44.00 40.96 36.84 43.59 42.59 46.67 56.25 43.59 67.31 50.00 44.12 62.16 34.67 50.00 20.00 24.44 38.46 40.00 36.36 48.28 NA 50.00 33.33 64.10 40.00 41.18 63.83 47.83 33.33 42.42 44.00 41.86 40.91 36.84 41.10 50.00 62.07 41.38 45.16 38.46 52.00 46.38 29.41 39.47 29.17 20.83 35.71 48.48 47.06 20.93 19.61 K intron_retention Vha100-1,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24958025_24958097 chr3R_24958024_24958025;chr3R_24958097_24958098 chr3R_24957848_24958024;chr3R_24958098_24958226 0.00 0.00 0.00 4.71 0.00 0.00 1.94 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.93 0.00 0.00 0.00 K alternative_acceptor CG42248,I_chrX_705402_712468 chrX - chrX_713860_714537 chrX_714112_714537 chrX_714538_716002;chrX_713726_713859 6.67 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 35.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG7200,RI_chr2L_18157864_18158015 chr2L - chr2L_18157864_18158015 chr2L_18157864_18157917 chr2L_18157764_18157863;chr2L_18158016_18158115 89.25 NA 90.00 89.36 NA 90.48 84.00 88.46 92.86 NA NA 89.66 100.00 NA 90.91 85.71 NA 95.65 78.26 89.13 NA NA NA 81.82 NA 80.77 NA NA 80.00 NA 84.00 90.00 92.31 86.67 NA NA NA NA NA 86.96 NA 89.74 NA 81.82 90.91 83.87 100.00 88.89 94.12 75.00 NA NA NA 87.50 92.86 78.26 95.24 95.24 K intron_retention ImpL3 chr3L - chr3L_6253011_6253080 chr3L_6253010_6253011;chr3L_6253080_6253081 chr3L_6252539_6253010;chr3L_6253081_6253536 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Pak,RI_chr3R_2181143_2181934 chr3R + chr3R_2181143_2182154 chr3R_2181143_2181934 chr3R_2181043_2181142;chr3R_2182155_2182320 0.82 0.00 0.00 0.00 0.00 0.00 1.16 0.65 0.00 0.89 1.33 0.54 0.00 1.04 0.82 0.82 0.00 1.20 0.00 0.89 0.00 4.52 1.01 0.55 0.84 1.83 1.06 1.68 0.00 0.77 0.00 0.00 0.74 1.38 2.33 0.00 1.03 1.36 0.00 2.30 0.00 0.44 0.00 1.75 0.00 0.82 0.00 2.19 1.14 1.28 1.20 2.13 1.03 0.95 1.34 0.00 0.00 0.77 K intron_retention CG5630 chr3R + chr3R_16752700_16752909 chr3R_16752699_16752700;chr3R_16752909_16752910 chr3R_16752493_16752699;chr3R_16752910_16753188 0.52 0.00 0.00 7.25 0.00 0.00 1.82 0.76 1.71 0.00 2.47 2.01 2.97 0.00 0.75 0.00 0.00 0.00 0.00 0.90 1.10 1.39 2.38 1.59 0.00 0.00 2.33 2.00 2.50 0.00 0.00 0.00 0.00 0.76 0.00 1.56 0.94 0.61 0.71 0.00 0.00 0.41 2.11 1.23 0.00 0.86 0.70 0.00 0.00 1.07 0.00 2.20 0.52 0.00 0.00 0.00 0.29 0.67 K intron_retention CG3308,I_chr3R_17098558_17099131,I_chr3R_17099005_17099062 chr3R - chr3R_17098558_17099062 chr3R_17098557_17098558;chr3R_17099062_17099063 chr3R_17098458_17098557;chr3R_17099063_17099162 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG11148,RI_chr4_886921_887162 chr4 - chr4_886921_887601;chr4_886921_887162;chr4_886921_887595 chr4_886921_887591 chr4_886821_886920;chr4_887602_887637 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA NA 0.00 N multi_cassette CG1674,I_chr4_253475_257020,F_chr4_258186_259747,F_chr4_259865_260939,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_254972_260939 chr4_254972_255489;chr4_255571_257020;chr4_257102_257894;chr4_258186_260939 chr4_255490_255570;chr4_257021_257101;chr4_257895_258185 chr4_254893_254971;chr4_260940_261024 100.00 100.00 100.00 53.33 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention mtm chr2L - chr2L_6035223_6035277 chr2L_6035222_6035223;chr2L_6035277_6035278 chr2L_6034715_6035222;chr2L_6035278_6036984 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 2.30 0.00 0.00 1.15 0.00 0.00 1.30 0.00 0.00 0.00 1.23 2.06 2.30 1.11 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.49 0.00 0.00 1.06 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2393243 chrX_2387249_2388436;chrX_2388671_2389073;chrX_2389272_2390808;chrX_2390959_2391350;chrX_2391522_2393243 chrX_2388437_2388670;chrX_2389074_2389271;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2393244_2393291 16.67 NA NA NA NA NA NA NA 16.67 NA NA 10.00 NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 11.11 NA NA 12.50 NA 20.00 NA 28.57 NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA K intron_retention pr,I_chr2L_20074851_20075383 chr2L - chr2L_20074129_20074190 chr2L_20074128_20074129;chr2L_20074190_20074191 chr2L_20073669_20074128;chr2L_20074191_20074336 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 1.61 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 K intron_retention CG15547,I_chr3R_26712627_26714606,RI_chr3R_26713323_26714382 chr3R - chr3R_26708650_26708704 chr3R_26708649_26708650;chr3R_26708704_26708705 chr3R_26707547_26708649;chr3R_26708705_26708793 0.00 6.45 0.00 1.22 3.45 0.00 3.28 5.13 6.67 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 2.94 2.35 0.00 0.00 0.00 0.00 0.00 NA 20.00 0.00 0.00 0.00 0.00 1.64 0.00 3.28 0.00 0.00 4.35 0.00 0.00 0.00 0.00 2.44 NA 0.00 0.00 0.00 0.00 4.35 3.70 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 K intron_retention CG15611,I_chr2R_12996782_13000822 chr2R + chr2R_12996782_12997447 chr2R_12996781_12996782;chr2R_12997447_12997448 chr2R_12996682_12996781;chr2R_12997448_12997579 0.00 0.00 0.00 5.13 0.00 0.00 12.90 0.00 7.41 NA 0.00 6.52 5.26 3.85 7.32 0.00 0.00 5.56 0.00 6.45 0.00 0.00 0.00 0.00 NA 0.00 0.00 6.25 0.00 0.00 0.00 NA 4.76 6.82 0.00 0.00 0.00 0.00 4.00 4.88 0.00 5.00 8.70 2.70 0.00 0.00 0.00 5.26 3.17 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K jcn_only_AD CG17883,I_chr2R_560147_560511,I_chr2R_560547_560618 chr2R + chr2R_560547_560618;chr2R_560147_560618;chr2R_560565_560618 chr2R_560568_560618 chr2R_560619_560642;chr2R_560047_560146 61.02 70.00 50.00 NA 68.00 64.29 79.35 65.15 60.71 NA 42.86 64.71 69.05 55.56 60.00 57.69 55.56 57.69 60.53 61.18 70.00 66.67 56.25 64.29 45.45 NA 40.00 61.90 NA 70.00 50.00 80.00 56.52 59.46 62.50 NA NA NA 72.00 63.41 NA 76.00 55.56 59.09 71.43 52.50 65.62 NA 60.87 46.15 57.69 56.00 70.97 56.67 47.06 64.10 73.47 61.70 K intron_retention CG3731,E_chr3R_10716521_10717949,E_chr3R_10717341_10717506 chr3R + chr3R_10717599_10717672 chr3R_10717598_10717599;chr3R_10717672_10717673 chr3R_10717507_10717598;chr3R_10717673_10718125 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.74 1.12 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Mgat2,I_chr3R_25842597_25842859,I_chr3R_25845406_25846373 chr3R - chr3R_25842597_25843346 chr3R_25842596_25842597;chr3R_25843346_25843347 chr3R_25842497_25842596;chr3R_25843347_25843409 31.73 NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA 25.00 NA NA NA 19.05 NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 38.46 NA NA 53.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD faf,RI_chr3R_27603474_27603893,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27613446_27613523 chr3R_27613461_27613523 chr3R_27613524_27613919;chr3R_27612869_27613445 90.97 91.25 93.51 86.55 88.52 90.97 92.34 90.84 92.58 90.79 91.67 91.84 92.31 90.67 92.07 88.14 90.09 94.01 91.49 91.11 91.72 93.98 90.48 92.83 86.51 91.79 87.68 86.11 86.52 86.71 88.74 93.39 90.42 94.96 93.20 78.49 92.82 93.75 91.43 89.47 86.67 91.67 88.11 91.53 88.94 87.34 90.87 82.46 90.18 93.79 93.09 89.09 93.91 91.18 89.60 89.13 91.11 84.18 K intron_retention Smr,C_chrX_12580865_12625568,E_chrX_12583695_12584523 chrX - chrX_12584072_12584124 chrX_12584071_12584072;chrX_12584124_12584125 chrX_12583324_12584071;chrX_12584125_12584261 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.35 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.37 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.65 0.00 2.30 0.00 0.00 0.00 0.00 1.16 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Aats-asn chr2L - chr2L_19131686_19131796 chr2L_19131685_19131686;chr2L_19131796_19131797 chr2L_19129400_19131685;chr2L_19131797_19131986 1.77 0.00 1.10 0.67 1.01 0.70 1.64 1.94 1.84 0.00 1.88 2.20 1.73 1.99 2.05 0.96 2.06 2.23 0.93 1.43 0.70 0.00 1.64 2.49 1.72 1.20 3.15 2.53 1.23 3.31 2.43 0.56 1.71 1.55 1.69 1.80 2.56 2.04 2.81 2.63 1.57 1.77 2.26 0.00 2.17 2.53 2.11 2.86 1.93 2.69 2.05 1.69 2.34 1.27 1.79 1.65 0.87 0.00 K alternative_donor RpL31,CG1827 chr2R + chr2R_5474844_5474951;chr2R_5474789_5474951 chr2R_5474734_5474951 chr2R_5474952_5475211;chr2R_5474727_5474733 97.58 97.83 97.55 99.11 98.53 97.09 92.21 97.93 97.51 98.22 97.55 96.34 96.15 93.98 99.05 95.45 98.35 96.91 98.05 98.31 97.37 99.31 97.33 98.26 98.74 98.28 87.10 97.58 95.53 98.03 94.91 98.64 99.34 98.66 97.41 94.50 97.21 97.22 97.04 99.48 97.14 99.24 98.31 97.83 99.32 96.06 95.74 98.81 97.88 98.90 95.00 97.34 98.59 87.80 99.24 95.19 96.51 98.93 K intron_retention RI_chrX_1796525_1796585,mip130,Rbcn-3B,I_chrX_1820956_1821011 chrX + chrX_1803484_1804673 chrX_1803483_1803484;chrX_1804673_1804674 chrX_1802912_1803483;chrX_1804674_1810858 0.00 0.00 4.55 7.41 0.00 0.00 3.70 3.70 4.65 0.00 15.38 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 11.63 2.13 0.00 NA 0.00 0.00 10.81 0.00 0.00 0.00 NA 0.00 4.88 0.00 0.00 5.26 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 NA 6.25 0.00 0.00 NA 3.85 NA NA 0.00 K cassette tan,R_chr3L_6048520_6048578,R_chr3L_6048608_6048676 chr3L + chr3L_6048520_6048816 chr3L_6048520_6048676;chr3L_6048764_6048816 chr3L_6048677_6048763 chr3L_6048508_6048519;chr3L_6048817_6048925 100.00 90.91 92.86 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 93.75 93.75 100.00 100.00 92.31 94.12 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 90.91 93.75 100.00 88.89 100.00 100.00 100.00 94.12 100.00 93.33 100.00 100.00 100.00 93.75 92.86 100.00 93.33 92.86 93.75 100.00 100.00 94.44 100.00 87.50 100.00 100.00 88.89 100.00 100.00 K jcn_only_AA I_chrX_3345099_3416710,CG10803,I_chrX_3380218_3380345 chrX + chrX_3380055_3380345;chrX_3380055_3380115 chrX_3380055_3380351 chrX_3379703_3380054 4.08 NA 3.85 4.55 NA NA 3.85 4.88 6.06 NA 4.76 2.38 NA NA NA 9.68 NA NA NA 0.00 NA NA 6.90 NA NA NA 4.35 NA NA NA NA NA 2.44 3.45 4.17 NA NA 0.00 NA 5.88 NA 0.00 NA 9.09 NA NA NA 2.86 4.00 NA NA NA NA NA NA NA NA NA K intron_retention tou,I_chr2R_7468394_7468453,RI_chr2R_7474644_7475275,I_chr2R_7479681_7491857,I_chr2R_7504956_7505020 chr2R - chr2R_7468394_7468453 chr2R_7468393_7468394;chr2R_7468453_7468454 chr2R_7468294_7468393;chr2R_7468454_7468553 96.30 96.77 96.67 100.00 96.30 94.29 93.75 84.00 91.84 98.31 100.00 95.92 92.86 100.00 95.65 94.12 100.00 100.00 90.00 96.23 100.00 95.35 94.34 98.18 97.44 95.83 90.24 98.21 96.67 98.92 100.00 97.44 96.83 89.29 96.61 93.94 95.77 97.44 96.49 98.10 94.59 93.44 94.12 90.70 96.55 99.30 93.62 98.22 97.78 97.22 88.14 92.86 92.50 89.47 96.97 90.91 85.71 98.32 K intron_retention YT521-B chr3L - chr3L_3373870_3374018 chr3L_3373869_3373870;chr3L_3374018_3374019 chr3L_3372970_3373869;chr3L_3374019_3374207 3.64 0.00 0.00 8.70 6.06 0.00 8.51 7.27 4.62 0.00 0.00 0.00 3.85 2.27 3.28 3.85 0.00 0.00 4.65 3.85 0.00 18.18 4.65 3.64 1.75 1.92 18.18 34.62 8.00 4.08 1.12 3.51 8.16 0.00 4.62 4.84 4.88 3.51 2.38 3.45 5.56 0.00 0.00 5.71 1.69 3.39 3.57 4.48 4.00 3.92 5.88 2.70 1.85 3.45 0.00 3.77 3.85 4.44 K jcn_only_AD EI_chrX_20347839_20348139,DMG4-MB6.chrX.37.001,RI_chrX_20380495_20381649 chrX - chrX_20380495_20381649 chrX_20380495_20381545 chrX_20380395_20380494;chrX_20381650_20381671 89.72 NA NA 96.00 NA NA NA 96.00 82.14 NA NA 93.33 NA NA NA 82.61 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 96.88 NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA 86.11 NA NA NA NA NA NA NA NA NA K jcn_only_AD caz,noncoding_24110,RI_chrX_16183147_16183258,RI_chrX_16183356_16185973 chrX + chrX_16183147_16183258 chrX_16183192_16183258 chrX_16183259_16183355;chrX_16183060_16183146 99.12 98.42 97.30 95.82 98.78 100.00 98.74 98.44 98.67 99.12 96.64 98.91 99.06 99.43 97.64 100.00 100.00 99.46 100.00 99.21 97.69 100.00 99.59 98.80 98.87 99.19 97.85 96.17 97.48 98.94 99.71 99.14 99.04 99.13 100.00 98.10 99.31 99.53 98.99 99.18 100.00 99.14 99.30 99.63 99.13 98.88 99.69 100.00 99.77 98.65 98.50 98.54 99.63 99.67 99.12 98.40 98.44 99.45 K intron_retention CG15602 chrX + chrX_15694071_15694128 chrX_15694070_15694071;chrX_15694128_15694129 chrX_15694002_15694070;chrX_15694129_15694197 0.00 0.00 0.00 4.35 0.00 0.00 4.55 0.00 2.17 NA 0.00 3.70 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 NA 0.00 0.00 2.94 0.00 0.00 0.00 2.94 0.00 0.00 0.00 1.92 0.00 0.00 3.03 0.00 0.00 14.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG2211,CG2199,RI_chr3L_1345162_1345493 chr3L - chr3L_1334973_1335040 chr3L_1334972_1334973;chr3L_1335040_1335041 chr3L_1334877_1334972;chr3L_1335041_1335288 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.94 100.00 100.00 100.00 99.17 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.47 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG31038,I_chr3R_25702915_25703648,I_chr3R_25705533_25722419,I_chr3R_25727788_25727905 chr3R + chr3R_25702915_25703648;chr3R_25702989_25703648;chr3R_25702897_25703648;chr3R_25702901_25703648;chr3R_25702838_25703648;chr3R_25702970_25703648 chr3R_25702895_25703648 chr3R_25703649_25703748;chr3R_25702831_25702837 0.00 0.00 0.00 16.67 NA 0.00 11.11 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 7.69 NA 0.00 0.00 3.45 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor heix,I_chr2L_16298194_16298401 chr2L - chr2L_16298194_16298871 chr2L_16298194_16298401 chr2L_16298094_16298193;chr2L_16298872_16298888 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14767,RI_chr2R_4610372_4610761 chr2R - chr2R_4607290_4607359 chr2R_4607289_4607290;chr2R_4607359_4607360 chr2R_4607151_4607289;chr2R_4607360_4607537 12.86 13.01 9.77 10.61 8.40 7.47 7.91 9.33 7.72 21.05 10.53 8.70 12.17 9.49 7.22 10.65 4.72 11.32 11.97 7.80 8.94 20.19 16.24 16.13 14.47 10.74 13.81 18.09 19.89 19.75 10.67 11.32 15.87 10.61 17.27 12.05 16.86 17.02 11.71 24.00 16.67 9.03 9.01 26.85 15.29 17.93 19.29 16.31 8.99 17.69 17.06 13.39 15.22 12.86 7.87 14.77 14.47 15.61 K intron_retention par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,EF_chr2R_15349994_15351814,F_chr2R_15349994_15351846,noncoding_8037,FI_chr2R_15350149_15351814,I_chr2R_15350437_15351814,I_chr2R_15350437_15351825,I_chr2R_15350905_15351814,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15350905_15351814 chr2R_15350904_15350905;chr2R_15351814_15351815 chr2R_15350805_15350904;chr2R_15351815_15351914 93.65 NA NA 100.00 NA NA NA 100.00 92.86 NA NA 87.50 NA NA NA 92.31 NA NA NA 94.44 NA NA NA NA NA 81.82 NA NA NA NA 100.00 NA NA 92.31 NA 100.00 NA NA NA NA NA 92.31 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention kuz,E_chr2L_13550294_13551106,CE_chr2L_13558833_13594255,I_chr2L_13636762_13637287 chr2L + chr2L_13635591_13635648 chr2L_13635590_13635591;chr2L_13635648_13635649 chr2L_13634544_13635590;chr2L_13635649_13636001 0.00 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_563485_567573;chr3R_563503_567573 chr3R_563461_567573 chr3R_567574_568885;chr3R_563195_563460 28.98 23.81 26.19 10.53 28.21 39.13 51.43 35.71 27.55 NA 50.00 34.67 15.91 26.09 25.53 20.00 31.25 25.71 25.71 28.92 31.43 32.00 36.00 25.64 NA 13.04 23.26 25.00 33.33 20.00 14.00 NA 39.62 31.43 26.09 30.43 39.53 14.81 40.54 29.85 33.33 24.68 33.33 37.50 29.03 15.56 59.38 19.35 35.00 29.03 38.89 22.22 NA NA 17.50 23.26 48.15 37.50 K intron_retention dorsal,RI_chr2L_17438018_17439189,FI_chr2L_17449369_17450215,noncoding_3500,RI_chr2L_17450002_17450219 chr2L - chr2L_17449369_17450219 chr2L_17449368_17449369;chr2L_17450219_17450220 chr2L_17449296_17449368;chr2L_17450220_17450306 8.05 0.00 11.11 10.61 0.00 3.85 13.56 10.26 6.02 10.71 5.71 9.35 5.71 15.56 8.47 12.61 11.11 5.26 15.22 5.10 5.00 1.75 10.61 14.29 10.71 15.62 25.00 14.29 11.43 5.97 8.42 6.06 9.64 11.11 0.00 8.51 11.76 0.00 6.90 8.99 6.85 8.05 15.62 11.36 5.13 5.49 8.00 5.03 11.88 5.56 6.90 4.44 0.00 4.76 3.17 6.52 15.79 3.31 K jcn_only_AA CG30122,I_chr2R_14526123_14526189 chr2R - chr2R_14520489_14520558 chr2R_14520492_14520558 chr2R_14520559_14520629;chr2R_14519851_14520488 87.23 88.05 94.79 89.05 85.14 87.83 86.99 88.11 89.28 87.23 85.37 87.59 83.91 86.49 84.62 92.31 88.07 78.26 85.37 87.91 88.71 86.56 89.38 91.21 91.89 92.08 87.38 88.48 85.07 86.04 82.93 84.80 84.98 89.47 86.71 84.92 88.48 84.38 87.37 84.37 89.34 87.36 83.81 86.67 85.50 90.54 86.43 87.06 89.43 87.75 86.60 84.71 84.88 88.64 87.93 87.24 85.84 85.37 K intron_retention CG15098,I_chr2R_14721883_14721980 chr2R - chr2R_14721902_14721983 chr2R_14721901_14721902;chr2R_14721983_14721984 chr2R_14721834_14721901;chr2R_14721984_14722049 82.21 NA NA NA NA NA NA 75.00 66.67 NA 66.67 87.50 NA NA 88.89 NA NA NA NA NA NA 87.50 NA NA NA NA 88.89 95.24 NA NA 87.50 NA NA 63.64 NA NA NA NA NA NA NA 76.92 NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA K intron_retention Med,CG1792 chr3R + chr3R_27439597_27439656 chr3R_27439596_27439597;chr3R_27439656_27439657 chr3R_27438982_27439596;chr3R_27439657_27439939 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 0.00 0.00 2.56 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG16965,dgt2,escl chr2L + chr2L_11990256_11990312 chr2L_11990255_11990256;chr2L_11990312_11990313 chr2L_11989954_11990255;chr2L_11990313_11990848 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 2.25 0.00 0.00 0.00 3.70 3.42 0.00 0.00 0.00 1.34 0.00 0.00 2.86 0.00 0.00 2.60 0.87 0.00 0.00 0.00 1.47 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG30035 chr2R + chr2R_7561681_7561748 chr2R_7561680_7561681;chr2R_7561748_7561749 chr2R_7561395_7561680;chr2R_7561749_7562266 0.00 0.00 NA 0.00 0.00 NA 5.88 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA NA NA NA 0.00 NA 29.41 NA NA 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA 0.00 NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA K alternative_donor Nup154,I_chr2L_11009331_11009442,I_chr2L_11011380_11011453 chr2L + chr2L_11009331_11009442 chr2L_11009378_11009442 chr2L_11009443_11009542;chr2L_11009231_11009330 97.87 97.92 92.16 98.78 94.87 100.00 98.55 98.77 98.97 100.00 97.22 95.00 95.35 97.22 97.96 95.45 97.73 95.45 98.08 98.11 97.37 97.87 95.00 98.31 95.12 98.15 98.18 100.00 80.39 98.33 98.00 98.46 98.90 97.80 94.12 100.00 90.48 97.14 98.04 96.10 98.53 97.67 95.00 98.04 98.53 99.06 93.55 97.80 97.94 97.01 98.48 100.00 88.24 88.64 96.83 95.65 96.49 99.07 K cassette tai,I_chr2L_9191814_9206231 chr2L + chr2L_9243901_9245385 chr2L_9243901_9244262;chr2L_9244587_9245385 chr2L_9244263_9244586 chr2L_9243648_9243900;chr2L_9245386_9245712 24.72 24.05 41.38 23.68 24.24 20.93 17.31 5.17 20.00 34.57 15.79 22.22 8.57 18.18 17.54 22.58 44.44 24.00 19.44 9.60 21.88 24.00 37.24 34.26 31.82 12.82 28.04 21.88 31.82 26.55 23.26 39.66 31.62 19.23 24.72 26.03 33.87 31.82 26.67 19.51 28.79 19.71 27.59 30.30 27.50 25.56 25.27 30.15 21.15 47.37 22.94 30.19 31.94 23.81 15.22 31.34 30.56 32.89 K alternative_donor EloA chr3R + chr3R_19080028_19080090 chr3R_19080032_19080090 chr3R_19080091_19080790;chr3R_19079740_19080027 100.00 96.43 100.00 100.00 100.00 100.00 100.00 96.55 97.50 100.00 100.00 100.00 100.00 100.00 96.43 100.00 93.33 100.00 100.00 100.00 100.00 96.55 100.00 100.00 97.22 100.00 100.00 97.06 100.00 100.00 100.00 100.00 96.30 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 97.92 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 N cassette CG11873,I_chr3R_24900749_24922953 chr3R + chr3R_24890335_24922953 chr3R_24890335_24900684;chr3R_24900749_24922953 chr3R_24900685_24900748 chr3R_24889554_24890334;chr3R_24922954_24923053 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 11.11 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K jcn_only_AA Axn,I_chr3R_25849563_25849626 chr3R + chr3R_25859466_25859544 chr3R_25859466_25859526 chr3R_25859321_25859465;chr3R_25859545_25859847 46.48 44.16 51.72 51.92 38.00 41.33 58.11 57.29 40.57 24.14 58.18 47.33 51.52 56.45 50.70 46.15 47.62 46.67 53.85 50.64 48.21 42.19 39.84 42.59 28.57 25.45 54.64 55.17 45.45 46.48 37.21 49.15 39.74 41.84 41.43 55.07 45.65 58.23 43.33 42.77 34.55 48.15 44.07 38.55 49.25 46.75 37.21 46.05 59.26 46.43 55.88 55.00 52.63 46.77 34.67 43.86 47.27 34.72 K cassette spz chr3R - chr3R_22892388_22894865;chr3R_22892922_22894865 chr3R_22892922_22893079,chr3R_22892388_22893079;chr3R_22893218_22894865 chr3R_22893080_22893217 chr3R_22892330_22892387;chr3R_22894866_22895053 33.74 33.33 44.86 16.82 31.87 30.67 27.20 29.50 30.42 34.55 44.63 28.68 42.29 35.80 36.51 42.08 38.51 36.94 37.84 37.91 39.06 30.95 29.65 26.67 31.75 36.59 30.26 27.03 21.82 36.84 34.46 35.71 36.06 38.71 41.94 15.20 27.27 31.58 29.95 47.13 39.67 33.15 38.46 39.22 21.17 33.74 32.22 37.39 36.65 35.43 34.36 29.41 21.34 31.91 38.50 31.69 24.51 30.65 K alternative_donor Mnf,RI_chr3L_11108913_11109028 chr3L - chr3L_11111166_11112264;chr3L_11111166_11113709 chr3L_11111166_11113381 chr3L_11110405_11111165;chr3L_11113710_11113829 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD iPLA2-VIA chr3L - chr3L_9856717_9856876;chr3L_9856717_9857106 chr3L_9856717_9857292 chr3L_9856421_9856716;chr3L_9857293_9857459 91.47 98.18 97.26 89.92 97.30 95.74 96.85 95.65 90.48 NA 86.54 88.71 97.92 93.59 90.41 88.17 94.83 97.14 96.92 92.86 86.30 87.97 89.52 89.33 85.29 88.24 86.89 88.52 86.25 88.14 91.95 96.43 88.76 92.62 86.42 96.00 90.00 92.42 90.54 96.55 94.87 91.38 96.15 93.83 78.12 90.00 85.71 93.18 92.50 86.00 87.25 91.55 97.50 89.66 92.31 91.84 96.23 90.24 K jcn_only_AA meso18E,I_chrX_19601491_19601568 chrX - chrX_19601491_19601568 chrX_19601498_19601568 chrX_19601569_19601635;chrX_19601429_19601490 100.00 100.00 100.00 100.00 100.00 99.35 100.00 99.51 99.70 99.30 100.00 100.00 100.00 99.11 100.00 100.00 100.00 98.44 100.00 100.00 100.00 99.53 100.00 100.00 100.00 100.00 100.00 98.60 100.00 99.69 100.00 100.00 99.80 100.00 100.00 99.39 99.74 100.00 99.75 99.55 99.64 99.61 100.00 100.00 99.71 99.09 99.60 99.38 100.00 100.00 99.31 99.22 100.00 100.00 99.36 99.54 99.67 99.76 K intron_retention Taf13,mRpS18B chr2L - chr2L_20093247_20093317 chr2L_20093246_20093247;chr2L_20093317_20093318 chr2L_20093014_20093246;chr2L_20093318_20093660 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6838,I_chr3L_22709306_22709668 chr3L - chr3L_22710181_22710293 chr3L_22710180_22710181;chr3L_22710293_22710294 chr3L_22710071_22710180;chr3L_22710294_22710303 86.57 86.54 85.45 75.00 90.24 88.33 96.20 86.87 84.82 82.22 85.11 89.19 81.03 82.00 88.57 86.30 80.43 80.39 86.57 88.79 85.71 77.94 86.36 82.61 88.89 93.59 95.24 95.24 91.67 84.91 91.18 93.44 94.26 84.78 84.78 95.00 73.44 85.71 83.91 80.77 96.10 85.47 91.67 88.24 93.75 98.75 92.16 95.24 92.37 87.30 88.14 84.44 81.25 97.62 83.12 75.51 86.57 93.60 K alternative_donor Pax,RI_chr2L_19404683_19426205,RI_chr2L_19404823_19409403,I_chr2L_19419985_19423267,I_chr2L_19419985_19423278,I_chr2L_19419985_19423414,I_chr2L_19420081_19423267,I_chr2L_19420081_19423278 chr2L - chr2L_19420192_19423267;chr2L_19420192_19423278 chr2L_19420192_19423414 chr2L_19420186_19420191;chr2L_19423415_19423487 25.00 50.00 0.00 25.00 NA 37.50 9.09 14.29 40.00 NA NA 46.67 NA NA 33.33 46.15 NA NA 16.67 33.33 NA 40.00 40.00 20.00 NA NA NA 16.67 NA 41.67 14.29 NA 16.67 23.08 22.22 16.67 NA 25.00 NA 26.67 NA 14.29 NA 20.00 NA 37.50 50.00 25.00 40.00 NA 57.14 NA NA NA 16.67 20.00 NA 20.00 K intron_retention nes chr3L - chr3L_19253331_19253648 chr3L_19253330_19253331;chr3L_19253648_19253649 chr3L_19253215_19253330;chr3L_19253649_19253699 67.55 72.73 66.67 71.43 71.43 56.25 55.56 69.57 65.00 57.14 NA 76.19 70.00 62.50 64.71 68.42 90.00 80.00 75.00 66.67 NA 50.00 66.67 78.95 75.00 84.62 70.00 63.64 57.14 NA 64.29 NA 63.64 71.43 66.67 83.33 50.00 63.64 76.47 66.67 NA 82.61 NA 81.82 66.67 60.00 NA 76.92 77.78 NA 70.00 70.59 NA NA 57.89 64.29 53.33 NA K alternative_donor fh,RI_chrX_9042659_9042723 chrX - chrX_9042659_9042727 chrX_9042659_9042723 chrX_9042559_9042658;chrX_9042728_9042823 1.75 2.27 2.33 6.90 3.85 3.03 0.00 3.57 3.51 0.00 0.00 0.00 0.00 4.17 2.70 4.35 0.00 0.00 0.00 1.37 0.00 0.00 2.38 1.72 5.26 15.38 0.00 5.56 8.82 2.94 3.23 0.00 0.00 6.25 0.00 0.00 1.54 2.13 1.67 2.00 8.82 1.75 0.00 2.70 2.94 2.17 0.00 0.00 0.00 0.00 3.45 0.00 2.17 5.26 0.00 0.00 0.00 8.33 K intron_retention Sox14 chr2R + chr2R_19868269_19871066 chr2R_19868268_19868269;chr2R_19871066_19871067 chr2R_19867418_19868268;chr2R_19871067_19871533 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 NA NA 0.00 NA 0.00 12.50 0.00 0.00 NA 0.00 0.00 0.00 0.00 4.35 0.00 9.09 8.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Rad23,RI_chr4_328916_330164 chr4 + chr4_329201_329274 chr4_329200_329201;chr4_329274_329275 chr4_329057_329200;chr4_329275_329705 100.00 100.00 100.00 100.00 100.00 100.00 97.39 99.22 100.00 95.83 100.00 100.00 98.28 98.51 100.00 100.00 98.46 100.00 100.00 100.00 100.00 100.00 100.00 98.31 100.00 98.46 100.00 100.00 100.00 97.44 98.53 100.00 97.62 99.12 100.00 97.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.33 97.96 100.00 100.00 K intron_retention CG31064,RI_chr3R_23056388_23064246,I_chr3R_23069667_23070365 chr3R - chr3R_23058598_23058656 chr3R_23058597_23058598;chr3R_23058656_23058657 chr3R_23058195_23058597;chr3R_23058657_23058907 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 K intron_retention CG42537,TfIIFalpha,I_chr3R_2211939_2212057 chr3R + chr3R_2203627_2203687 chr3R_2203626_2203627;chr3R_2203687_2203688 chr3R_2203519_2203626;chr3R_2203688_2203901 100.00 100.00 NA NA NA NA 100.00 100.00 94.74 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 88.89 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 92.31 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 NA 94.44 NA 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 K cassette Eps-15,I_chr2R_20660319_20660496 chr2R - chr2R_20660319_20660734 chr2R_20660319_20660463;chr2R_20660527_20660734 chr2R_20660464_20660526 chr2R_20660219_20660318;chr2R_20660735_20660822 86.54 83.53 87.32 65.32 87.93 87.72 50.00 86.73 86.45 90.57 92.45 92.74 95.83 86.54 91.55 81.69 92.00 85.00 90.20 91.95 92.16 84.21 78.95 87.83 86.76 62.30 87.78 100.00 66.10 85.33 78.46 93.33 78.63 84.69 88.71 63.77 91.22 92.22 88.52 86.99 75.00 88.15 81.25 85.37 80.30 82.61 85.92 77.38 84.55 90.28 86.54 90.32 76.81 88.89 77.78 82.76 78.02 72.00 K alternative_acceptor Gbeta13F,I_chrX_15754284_15755167,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15754356_15755256;chrX_15754356_15755172;chrX_15754356_15755268;chrX_15754356_15755409 chrX_15754356_15755184 chrX_15754256_15754355;chrX_15755410_15755509 25.00 23.81 25.00 30.00 25.00 NA 42.42 26.00 25.61 NA NA 22.39 26.09 31.25 38.89 22.64 40.91 25.00 25.81 40.00 NA 38.89 20.00 40.00 26.67 NA 25.00 NA 18.18 23.53 22.73 NA 35.48 20.41 37.50 NA 26.09 NA NA 25.00 21.43 16.67 21.21 26.09 28.57 24.00 NA 15.79 17.50 NA 21.05 25.00 NA 41.67 16.00 NA 30.00 18.75 K intron_retention CG18624,RI_chrX_7787450_7787620,RI_chrX_7787450_7787687,RI_chrX_7787524_7787687 chrX - chrX_7787450_7787782 chrX_7787449_7787450;chrX_7787782_7787783 chrX_7787424_7787449;chrX_7787783_7787787 99.15 99.23 97.01 98.99 98.90 99.17 96.67 94.16 96.28 100.00 97.78 96.52 95.10 96.88 99.15 97.26 98.85 98.13 97.80 95.58 99.03 100.00 99.26 100.00 100.00 98.98 99.35 98.88 99.29 100.00 98.73 99.52 100.00 97.20 100.00 100.00 99.59 99.19 100.00 99.60 100.00 98.54 97.78 100.00 97.98 100.00 99.32 100.00 98.10 99.15 98.99 100.00 99.24 99.26 96.99 100.00 99.64 99.01 N alternative_acceptor CG15099 chr2R - chr2R_14725051_14725138 chr2R_14725074_14725138 chr2R_14725139_14725207;chr2R_14724985_14725050 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 57.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette CG11138 chrX - chrX_12467443_12475604 chrX_12467443_12467757;chrX_12467893_12475604 chrX_12467758_12467892 chrX_12466805_12467442;chrX_12475605_12477211 52.94 51.72 53.85 46.67 57.14 47.83 29.17 55.56 60.00 38.78 40.74 41.67 30.43 60.00 60.00 52.94 52.17 45.16 37.04 48.98 55.00 53.33 63.46 58.33 41.18 53.85 51.72 66.67 48.39 56.25 62.96 66.67 56.76 47.62 53.33 47.06 44.30 54.17 47.27 43.55 50.00 50.88 71.43 44.44 53.57 60.00 51.72 59.38 63.04 52.00 43.24 41.67 62.50 61.11 66.67 50.00 65.52 68.18 K intron_retention mRpS18A chr3R - chr3R_4388038_4388133 chr3R_4388037_4388038;chr3R_4388133_4388134 chr3R_4387593_4388037;chr3R_4388134_4388316 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 NA 1.61 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor oho23B,I_chr2L_2856176_2856244,I_chr2L_2856573_2856630,RI_chr2L_2856673_2856772 chr2L + chr2L_2856306_2856391 chr2L_2856306_2856376 chr2L_2856279_2856305;chr2L_2856392_2856568 99.98 100.00 100.00 99.98 99.96 99.96 100.00 100.00 100.00 99.96 100.00 99.98 100.00 100.00 99.97 99.96 99.96 99.97 99.96 99.99 100.00 99.95 99.98 99.98 99.96 100.00 99.98 76.31 100.00 99.97 99.97 100.00 99.97 100.00 99.97 100.00 99.97 99.98 99.99 99.98 99.97 99.98 99.96 99.98 99.98 99.98 99.98 100.00 99.97 99.98 99.98 99.96 100.00 99.99 99.97 99.99 100.00 99.98 K intron_retention Aldolase,I_chr3R_22083764_22086684,I_chr3R_22086804_22086875 chr3R - chr3R_22083764_22087057 chr3R_22083763_22083764;chr3R_22087057_22087058 chr3R_22083664_22083763;chr3R_22087058_22087313 1.18 0.91 1.20 0.75 1.63 1.48 3.16 0.92 0.89 0.85 1.16 0.92 1.44 0.37 1.19 0.80 1.54 0.89 2.14 0.68 1.32 1.11 1.05 0.64 2.01 1.68 1.49 2.50 1.64 0.88 1.18 1.40 1.33 1.31 1.46 1.72 0.54 0.43 0.51 2.04 2.25 1.01 1.73 2.12 0.65 1.04 0.81 1.72 1.61 0.55 0.69 1.52 1.03 1.55 1.18 0.65 0.79 0.30 K intron_retention CG10590 chr3L - chr3L_5596730_5596787 chr3L_5596729_5596730;chr3L_5596787_5596788 chr3L_5596172_5596729;chr3L_5596788_5597472 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 3.06 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG42593,F_chrX_7841357_7841447 chrX + chrX_7844331_7844396 chrX_7844331_7844393 chrX_7841448_7844330;chrX_7844397_7844817 90.47 89.80 90.38 91.38 92.31 91.49 85.07 92.41 88.72 90.91 93.18 87.37 86.54 87.80 93.10 94.55 94.00 96.67 94.34 90.35 94.44 87.61 88.24 88.00 94.12 91.67 91.30 94.87 89.29 84.31 76.92 77.78 91.89 94.52 86.67 89.47 87.93 78.26 92.54 91.11 NA 82.14 90.24 90.57 92.31 89.36 83.78 NA 89.25 92.00 87.84 92.59 83.33 92.31 94.34 88.64 90.91 NA K intron_retention CG1737 chrX + chrX_11244877_11245023 chrX_11244876_11244877;chrX_11245023_11245024 chrX_11244667_11244876;chrX_11245024_11245310 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 95.24 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 K jcn_only_AD cora,I_chr2R_15116651_15116928,I_chr2R_15129291_15129988 chr2R + chr2R_15116620_15116928 chr2R_15116651_15116928 chr2R_15116929_15117028;chr2R_15116580_15116619 0.65 0.00 0.75 1.59 0.00 0.00 0.94 0.00 0.00 NA 1.67 1.22 0.64 0.00 1.45 0.78 0.65 0.00 1.07 0.32 0.72 3.33 0.00 1.59 0.00 0.86 NA NA 9.38 0.00 0.67 4.17 2.27 0.31 NA NA 2.50 7.41 0.00 0.00 NA 0.74 0.00 0.00 0.00 0.00 NA 0.00 1.21 0.00 0.00 3.85 NA NA 0.71 NA 0.00 5.00 K intron_retention bocksbeutel chr3R - chr3R_5415505_5415604 chr3R_5415504_5415505;chr3R_5415604_5415605 chr3R_5415190_5415504;chr3R_5415605_5416709 80.00 80.65 81.08 92.45 82.61 73.08 80.95 75.44 83.93 77.27 95.00 81.58 76.19 80.00 84.62 73.91 85.00 70.00 80.00 72.58 88.89 83.33 81.25 65.85 85.71 85.71 90.91 80.00 77.27 70.59 86.67 82.93 65.22 77.78 70.00 80.00 81.25 77.14 67.57 81.82 75.00 81.13 92.31 73.08 80.95 77.78 77.50 83.33 84.78 72.88 76.19 77.78 68.00 66.67 74.29 80.56 90.91 81.58 K alternative_acceptor CG15814,I_chrX_17743744_17743940 chrX - chrX_17743744_17743940 chrX_17743844_17743940 chrX_17743941_17744040;chrX_17743644_17743743 98.11 97.92 100.00 98.08 96.97 100.00 97.83 98.11 98.98 97.56 96.97 98.31 96.97 96.97 97.14 97.73 96.88 100.00 100.00 98.92 96.67 95.56 100.00 98.55 100.00 86.21 98.68 95.45 79.75 97.01 100.00 96.88 98.17 98.08 92.86 100.00 99.20 98.41 95.51 100.00 98.51 98.73 100.00 98.57 97.22 98.75 98.08 97.25 98.39 96.88 98.48 97.50 100.00 95.35 97.62 100.00 100.00 99.10 K alternative_donor HSPC300,I_chr2R_19915648_19915744,I_chr2R_19915648_19915903,I_chr2R_19915648_19916060 chr2R - chr2R_19915648_19916136;chr2R_19915648_19915903 chr2R_19915648_19915744 chr2R_19915548_19915647;chr2R_19916137_19916160 0.00 0.00 1.37 0.00 0.00 0.00 1.98 0.00 0.84 0.00 0.00 0.50 1.03 0.00 0.00 0.62 0.00 0.94 0.81 0.29 0.00 0.00 0.00 0.00 2.50 0.00 1.82 2.33 0.00 1.45 0.65 0.00 0.00 0.49 1.18 0.00 0.00 0.00 1.67 0.83 0.58 0.44 0.00 0.00 0.50 0.66 0.00 0.00 0.72 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.68 0.26 K intron_retention CG1041,I_chr3R_2199103_2199426 chr3R - chr3R_2197521_2197579 chr3R_2197520_2197521;chr3R_2197579_2197580 chr3R_2196865_2197520;chr3R_2197580_2197828 0.00 NA NA 5.56 NA NA 0.00 0.00 0.00 NA NA 0.00 6.67 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 0.00 0.00 7.41 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 K intron_retention CG5013,I_chr3R_11877071_11877796 chr3R + chr3R_11875639_11875689 chr3R_11875638_11875639;chr3R_11875689_11875690 chr3R_11875510_11875638;chr3R_11875690_11876423 10.81 4.55 23.08 21.74 4.00 20.00 16.28 16.22 7.69 5.88 18.52 12.28 3.03 17.24 14.29 11.54 10.71 13.33 10.81 13.04 4.17 14.29 6.56 10.71 28.00 7.14 18.97 33.33 16.67 13.16 26.83 8.82 14.29 11.63 8.57 16.67 13.21 6.90 11.11 14.04 13.33 6.67 0.00 5.00 9.52 12.50 0.00 7.41 8.00 8.51 13.21 3.57 6.25 6.52 6.82 6.25 3.53 8.89 K intron_retention CG3262 chr2L + chr2L_22240104_22240169 chr2L_22240103_22240104;chr2L_22240169_22240170 chr2L_22239906_22240103;chr2L_22240170_22240402 8.86 8.06 7.32 17.02 11.76 5.15 9.85 6.36 14.06 11.11 9.86 9.90 11.58 8.70 8.87 7.01 9.38 8.94 6.82 5.94 9.47 16.39 9.71 12.10 8.57 10.17 17.82 21.74 12.90 8.06 3.37 5.74 8.77 7.88 12.20 6.80 15.79 13.64 8.51 5.88 13.33 6.76 5.68 8.86 11.93 7.45 7.48 7.22 6.47 12.22 12.26 7.46 4.60 12.79 8.67 6.15 8.92 4.63 K intron_retention RpL24,I_chr2L_13394941_13395015 chr2L - chr2L_13394941_13395055 chr2L_13394940_13394941;chr2L_13395055_13395056 chr2L_13394865_13394940;chr2L_13395056_13395065 0.20 0.00 0.08 0.00 0.00 0.00 0.44 0.12 0.20 0.00 0.00 0.06 0.00 0.12 0.12 0.10 0.00 0.17 0.00 0.13 0.29 0.42 2.34 0.75 2.82 0.43 3.14 2.22 0.59 0.00 0.93 0.32 1.29 0.11 1.41 7.33 0.00 0.00 1.14 0.39 1.40 0.00 0.00 0.45 0.07 0.25 1.04 0.36 0.55 0.00 2.40 0.00 0.21 2.35 0.22 0.89 0.00 0.13 K jcn_only_AD px,RI_chr2R_18424832_18424969,RI_chr2R_18448648_18449438,R_chr2R_18448676_18449403 chr2R - chr2R_18428483_18442722 chr2R_18428483_18430834 chr2R_18428263_18428482 22.58 31.03 17.65 29.31 25.81 33.33 22.58 40.98 25.68 28.57 22.22 19.44 38.71 32.26 38.78 53.49 29.63 24.32 31.91 31.75 NA 9.09 14.29 15.07 13.64 20.69 17.74 9.09 24.39 12.50 21.21 28.00 15.94 36.54 20.00 12.20 7.02 8.33 13.46 10.64 33.33 25.37 35.14 10.71 10.53 28.57 0.00 55.56 32.84 8.33 14.29 13.79 24.00 NA 35.14 2.86 13.33 51.79 K intron_retention CG31619,I_chr2L_21725446_21728027 chr2L + chr2L_21719644_21720122 chr2L_21719643_21719644;chr2L_21720122_21720123 chr2L_21719514_21719643;chr2L_21720123_21720140 21.70 20.00 NA 21.67 NA NA 25.00 29.63 35.00 NA NA 11.86 NA 30.77 42.86 29.41 NA NA 21.74 21.43 NA 7.69 NA NA NA 27.78 NA NA NA NA 27.78 15.00 10.00 37.04 NA NA NA NA 29.41 11.54 5.71 19.05 38.46 7.69 3.45 4.00 0.00 NA 28.57 NA NA NA NA NA 29.17 25.00 NA 6.25 K jcn_only_AA Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045251_16046104;chr3L_16045251_16046129;chr3L_16045251_16046108;chr3L_16045251_16045854 chr3L_16045251_16046111 chr3L_16045216_16045250;chr3L_16046130_16046204 16.36 21.95 14.58 19.05 21.43 10.91 13.70 19.05 18.81 10.81 2.50 14.43 18.46 13.85 20.25 12.90 27.42 6.67 21.25 17.19 3.85 27.27 18.99 12.24 15.22 10.45 8.96 11.90 15.52 22.09 19.05 23.08 16.33 10.00 14.58 20.75 15.00 10.00 20.45 17.14 28.57 11.50 20.00 9.09 27.27 22.03 19.35 16.39 23.36 19.05 15.52 10.71 3.85 NA 17.95 15.15 9.52 23.23 K jcn_only_AA Ptpmeg,I_chr3L_353688_353782,I_chr3L_355125_355175 chr3L + chr3L_355125_355198 chr3L_355125_355175 chr3L_355057_355124;chr3L_355199_355275 0.00 0.00 0.00 1.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.74 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.00 0.59 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.74 0.55 0.00 0.00 K cassette su(Hw) chr3R - chr3R_10133693_10133997 chr3R_10133693_10133756;chr3R_10133931_10133997 chr3R_10133757_10133930 chr3R_10132820_10133692;chr3R_10133998_10134121 80.00 100.00 NA 70.00 NA NA 84.62 66.67 69.23 NA NA 75.00 66.67 NA NA 66.67 NA NA 100.00 80.00 80.00 100.00 100.00 83.33 NA 83.33 NA NA 66.67 NA 83.33 NA NA 70.00 NA NA NA NA 57.14 85.71 NA 87.50 80.00 NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA K intron_retention tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_563503_565293 chr3R_563502_563503;chr3R_565293_565294 chr3R_563488_563502;chr3R_565294_565301 46.15 NA NA 14.29 NA NA NA 50.00 24.24 NA NA 69.23 NA NA NA 40.00 NA NA NA 63.64 NA NA NA NA NA NA 46.15 NA NA NA NA NA NA NA NA NA 27.27 NA NA 53.85 NA 33.33 NA NA NA NA NA NA 47.06 NA NA NA NA NA 26.67 NA 66.67 NA N alternative_donor CG17760 chr2R + chr2R_8513482_8514257;chr2R_8513642_8514257 chr2R_8513731_8514257 chr2R_8514258_8514421;chr2R_8513465_8513481 13.81 9.09 16.67 10.00 NA 22.22 28.00 12.20 9.86 NA 0.00 11.11 25.00 10.00 0.00 14.55 12.50 25.00 17.65 10.00 14.29 0.00 17.65 12.50 20.00 16.67 20.00 NA NA 14.29 16.67 NA 20.00 27.03 8.33 10.00 0.00 25.00 NA 16.67 0.00 15.38 5.88 0.00 NA 15.38 0.00 33.33 17.07 18.18 13.33 10.00 NA NA 7.14 11.11 0.00 20.00 K intron_retention CG11063 chrX - chrX_13721139_13721372 chrX_13721138_13721139;chrX_13721372_13721373 chrX_13721076_13721138;chrX_13721373_13721542 5.86 4.44 10.42 5.06 4.44 8.70 11.63 10.26 8.86 4.88 12.50 5.71 8.33 9.09 3.92 16.00 10.00 4.44 7.32 11.11 7.32 3.76 5.56 4.08 0.00 6.52 7.27 0.00 5.32 5.71 11.11 7.03 4.35 2.90 3.39 9.23 9.80 2.33 5.48 0.00 8.74 5.00 7.41 4.35 5.30 9.86 0.00 6.33 7.06 8.82 8.47 3.12 3.17 0.00 5.88 3.12 5.88 5.86 K alternative_acceptor CG14882 chr3R + chr3R_12269100_12269224 chr3R_12269100_12269149 chr3R_12268934_12269099;chr3R_12269225_12270541 100.00 NA NA 100.00 NA NA 100.00 88.89 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA NA 100.00 90.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 NA NA NA NA 100.00 100.00 92.31 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 K intron_retention arm,I_chrX_1793073_1794406,RI_chrX_1795648_1795745,I_chrX_1798310_1798525,I_chrX_1798315_1798577 chrX - chrX_1789075_1789146 chrX_1789074_1789075;chrX_1789146_1789147 chrX_1788874_1789074;chrX_1789147_1790786 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.40 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL15 chr3LHet + chr3LHet_2398002_2398127 chr3LHet_2398001_2398002;chr3LHet_2398127_2398128 chr3LHet_2397802_2398001;chr3LHet_2398128_2398454 100.00 99.15 100.00 100.00 100.00 100.00 99.84 100.00 100.00 98.89 100.00 100.00 100.00 100.00 100.00 99.66 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.84 100.00 100.00 99.83 98.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.07 100.00 100.00 100.00 100.00 99.25 100.00 100.00 100.00 100.00 99.39 100.00 100.00 100.00 K jcn_only_AD sta chrX - chrX_1376949_1377164;chrX_1376949_1377143 chrX_1376949_1377290 chrX_1376851_1376948;chrX_1377291_1377379 99.47 98.78 99.33 99.69 99.61 99.72 99.29 99.64 99.46 98.90 99.52 99.60 99.71 99.50 99.65 99.51 99.50 99.55 99.64 99.69 99.65 99.04 96.83 97.00 99.08 99.65 98.43 99.76 99.15 99.42 97.61 99.52 99.81 99.62 97.21 98.59 98.78 97.83 98.25 99.86 99.56 99.67 99.68 99.83 99.53 99.45 98.19 99.78 99.39 97.90 95.74 98.84 99.46 93.08 99.47 98.30 97.72 99.73 K jcn_only_AA CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20824631_20825283 chr2L_20824631_20825271 chr2L_20824625_20824630;chr2L_20825284_20825366 91.15 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA 96.43 NA NA NA NA NA NA 89.39 NA NA NA NA NA 93.10 NA 91.23 NA NA NA NA NA NA NA NA NA 91.07 K intron_retention gro chr3R + chr3R_21869332_21870031 chr3R_21869331_21869332;chr3R_21870031_21870032 chr3R_21869237_21869331;chr3R_21870032_21870095 0.00 0.00 0.00 0.00 0.00 0.00 2.61 0.00 1.60 0.00 0.00 2.13 0.98 0.00 0.00 0.00 1.67 0.00 0.81 1.10 0.00 0.00 0.93 0.00 0.00 2.33 3.16 6.25 0.00 0.00 0.00 0.98 0.00 0.46 0.96 0.00 1.88 0.00 0.00 1.08 0.00 2.46 0.00 0.00 0.00 0.00 0.88 0.00 1.85 0.00 1.25 0.00 0.00 2.04 1.88 1.53 0.00 0.00 K intron_retention CG2064 chr2R + chr2R_3553522_3553650 chr2R_3553521_3553522;chr2R_3553650_3553651 chr2R_3553444_3553521;chr2R_3553651_3553914 0.73 0.00 0.00 0.99 1.37 0.00 1.50 0.00 0.87 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 1.41 0.93 0.79 1.80 0.00 0.79 1.29 2.39 2.01 0.42 0.66 0.68 0.77 1.19 0.97 2.00 1.71 0.97 0.90 1.18 0.67 0.00 1.23 1.27 1.20 1.00 1.59 0.00 1.33 0.73 1.54 0.00 0.00 0.00 0.00 0.62 0.00 K alternative_donor Pak,RI_chr3R_2181143_2181934 chr3R + chr3R_2176677_2180635 chr3R_2177074_2180635 chr3R_2180636_2180902;chr3R_2176656_2176676 81.25 80.00 85.07 68.75 76.00 73.85 88.57 83.33 73.19 72.97 67.35 78.26 79.55 86.54 79.69 86.11 81.25 82.54 82.46 77.48 81.25 88.46 82.61 77.78 80.49 83.78 85.71 85.19 75.56 92.31 78.79 75.00 77.36 78.57 91.18 87.50 78.95 77.78 81.82 82.98 84.62 70.45 84.44 85.25 54.29 89.66 84.62 84.13 76.69 70.97 90.57 73.91 86.21 89.47 83.56 78.79 62.50 76.74 K intron_retention CG42540,C_chr3L_4563905_4578759 chr3L + chr3L_4580160_4586579 chr3L_4580159_4580160;chr3L_4586579_4586580 chr3L_4580143_4580159;chr3L_4586580_4586718 11.43 NA NA 11.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG42348,I_chr3L_20149990_20151579 chr3L - chr3L_20149099_20151579 chr3L_20149099_20149779;chr3L_20150323_20151579 chr3L_20149780_20150322 chr3L_20149001_20149098;chr3L_20151580_20151679 2.78 1.54 2.70 7.14 2.27 4.65 2.27 2.00 2.65 3.45 3.45 2.27 5.56 0.00 2.70 3.12 2.44 6.90 2.08 4.82 2.38 9.80 3.61 3.61 4.17 2.33 4.44 8.33 2.94 5.56 0.00 3.23 2.67 2.63 4.26 5.77 2.88 2.11 3.96 2.83 2.13 1.94 2.78 1.61 3.45 3.03 1.85 5.00 2.74 1.92 4.41 2.56 1.82 2.94 1.79 4.00 1.82 2.00 K intron_retention CHKov1,F_chr3R_21149619_21151172 chr3R - chr3R_21149651_21149744 chr3R_21149650_21149651;chr3R_21149744_21149745 chr3R_21149588_21149650;chr3R_21149745_21149810 76.23 81.82 50.00 73.33 88.89 63.64 70.83 82.14 70.00 87.50 80.00 71.43 65.00 76.47 72.22 76.00 64.29 84.62 87.50 87.50 66.67 87.50 68.75 87.50 NA 71.43 60.00 75.00 88.24 100.00 75.00 62.50 65.22 68.57 NA 50.00 91.67 60.00 56.25 70.37 84.62 76.92 63.64 83.33 85.71 89.47 NA 86.67 77.78 61.54 80.00 NA 77.78 NA 83.33 88.89 73.33 77.78 K jcn_only_AA Graf,RI_chrX_15652351_15654288,RI_chrX_15652363_15654157,RI_chrX_15652363_15654499,RI_chrX_15654228_15654288 chrX - chrX_15648806_15649136 chrX_15648833_15649136 chrX_15649137_15649180;chrX_15648519_15648805 37.67 34.78 37.14 47.92 NA 51.72 49.21 45.00 43.55 NA NA 37.04 72.97 53.19 37.14 52.38 25.00 37.50 35.09 24.59 48.15 33.33 NA NA NA 38.10 47.83 NA 33.33 29.63 40.00 25.71 50.00 34.43 25.93 NA NA NA NA 35.38 40.00 39.68 37.84 23.81 34.78 35.85 NA 42.47 42.42 NA 46.43 26.47 NA NA 36.84 NA NA 47.56 K jcn_only_AD D1,RI_chr3R_5065631_5065691,I_chr3R_5065631_5065695,I_chr3R_5065631_5065697 chr3R - chr3R_5065631_5065767;chr3R_5065631_5065697;chr3R_5065631_5065695 chr3R_5065631_5065691 chr3R_5065531_5065630;chr3R_5065768_5065790 23.81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 28.57 NA NA 23.81 NA NA NA NA NA NA NA NA NA 15.62 K jcn_only_AA Papss chr3L + chr3L_19838529_19838611;chr3L_19838529_19838596 chr3L_19838529_19838634 chr3L_19838397_19838528;chr3L_19838635_19838730 0.00 NA NA NA NA NA NA NA 0.00 NA NA 4.76 NA NA NA NA NA NA NA 9.38 NA NA 14.29 NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA 9.52 NA NA NA 0.00 NA NA 0.00 NA 0.00 NA NA NA NA NA NA 5.41 K intron_retention Zasp52,I_chr2R_11690993_11701987 chr2R - chr2R_11651095_11651150 chr2R_11651094_11651095;chr2R_11651150_11651151 chr2R_11650855_11651094;chr2R_11651151_11651334 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 2.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2629527_2629921 chr3L_2629527_2629913 chr3L_2629427_2629526;chr3L_2629922_2630021 94.98 98.89 94.07 94.44 91.46 92.65 93.40 95.24 94.31 96.15 100.00 95.62 97.21 97.59 92.49 94.81 95.45 96.59 95.14 93.67 98.94 93.33 95.27 91.76 96.00 94.63 95.45 100.00 91.21 95.51 93.48 94.12 98.31 94.98 90.79 95.45 95.35 94.52 97.32 97.04 93.75 94.39 97.71 91.67 94.52 95.83 93.85 94.70 94.71 92.31 95.42 94.59 95.29 96.23 94.87 97.65 97.01 94.90 K multi_cassette CtBP chr3R + chr3R_8845924_8847141 chr3R_8845924_8846575;chr3R_8846837_8846897;chr3R_8847039_8847141 chr3R_8846576_8846836;chr3R_8846898_8847038 chr3R_8845618_8845923;chr3R_8847142_8847364 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N intron_retention Lag1,RI_chrX_6153758_6153930,I_chrX_6153758_6155077,RI_chrX_6153758_6161036,I_chrX_6160751_6160887,I_chrX_6160907_6161036 chrX - chrX_6153758_6154631 chrX_6153757_6153758;chrX_6154631_6154632 chrX_6153658_6153757;chrX_6154632_6154697 16.67 25.00 15.00 25.00 NA 15.79 25.93 8.33 17.95 NA 17.65 15.38 22.22 23.81 NA 19.51 NA 20.00 15.00 16.28 NA 21.43 18.75 12.50 NA 10.53 NA 28.57 11.11 12.50 19.05 23.08 NA 20.93 20.00 NA NA NA 12.50 10.34 NA 16.67 0.00 14.29 20.00 11.11 10.53 20.00 17.65 NA 11.11 16.67 NA 15.38 6.90 25.00 NA NA K jcn_only_AD Ras85D,I_chr3R_5338160_5338509,EI_chr3R_5338175_5338279,I_chr3R_5338175_5338299 chr3R - chr3R_5338175_5338299;chr3R_5338175_5338509 chr3R_5338175_5338279 chr3R_5338075_5338174;chr3R_5338510_5338609 2.52 3.35 2.83 2.10 1.64 2.24 1.77 2.12 2.73 2.19 2.78 1.54 1.21 1.70 1.47 3.10 3.41 3.93 2.15 3.27 0.41 3.18 4.55 2.54 2.88 1.88 2.55 5.76 1.70 2.02 4.53 1.39 1.55 0.85 2.52 2.13 2.64 3.82 3.24 3.20 1.10 3.90 2.05 6.74 1.22 0.64 2.40 2.78 1.62 3.62 4.49 1.63 4.65 3.76 2.41 2.82 4.43 2.36 K cassette Psi,I_chr2R_12753387_12753659 chr2R - chr2R_12753387_12753659 chr2R_12753387_12753448;chr2R_12753602_12753659 chr2R_12753449_12753601 chr2R_12753287_12753386;chr2R_12753660_12753759 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 K intron_retention Doa,I_chr3R_24715823_24718923,I_chr3R_24747391_24747896 chr3R + chr3R_24713971_24714030 chr3R_24713970_24713971;chr3R_24714030_24714031 chr3R_24713819_24713970;chr3R_24714031_24714256 68.75 64.29 68.52 72.58 75.00 81.08 64.29 72.31 69.86 68.75 76.92 75.71 71.43 75.00 67.31 61.04 71.05 68.29 65.00 73.79 78.05 51.85 68.54 71.93 73.81 84.09 83.33 64.71 77.42 78.95 66.67 70.97 56.67 80.65 75.68 86.05 63.64 59.26 68.42 61.45 66.67 75.61 76.32 66.67 62.96 65.85 54.76 68.75 62.77 75.76 66.15 70.27 51.22 60.71 60.00 56.25 74.19 80.00 K jcn_only_AD CaMKI,I_chr4_466377_467256,I_chr4_466377_467726,I_chr4_467072_467446,I_chr4_467378_467424,RI_chr4_467374_467424,RI_chr4_467482_467543,I_chr4_467862_471815,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_466592_467726;chr4_466275_467726;chr4_466377_467726;chr4_467662_467726;chr4_466798_467726 chr4_467273_467726 chr4_467727_467826;chr4_466269_466274 0.00 0.00 NA 6.45 NA 0.00 0.00 0.00 1.47 NA NA 0.00 0.00 0.00 NA 2.50 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 5.00 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention CG11092 chrX + chrX_13717365_13717443 chrX_13717364_13717365;chrX_13717443_13717444 chrX_13717184_13717364;chrX_13717444_13718247 0.00 0.75 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.36 0.78 0.00 0.00 0.00 0.00 0.00 1.94 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 1.11 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.82 0.88 0.84 0.67 0.95 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_donor CG8531,RI_chr2R_10144869_10144912 chr2R + chr2R_10145138_10145276;chr2R_10145070_10145276 chr2R_10145224_10145276 chr2R_10145277_10145393;chr2R_10144926_10145069 98.70 98.75 98.96 99.17 98.41 98.59 100.00 94.93 90.91 97.96 98.70 95.17 100.00 98.41 98.99 92.56 100.00 98.80 100.00 96.15 98.72 77.42 99.01 99.04 98.41 100.00 99.18 98.97 98.70 98.61 74.63 98.39 98.95 94.31 98.39 98.39 98.97 88.31 99.05 99.09 98.08 99.35 98.36 98.84 98.53 98.82 98.75 98.46 93.28 83.49 84.96 100.00 98.25 98.55 98.90 98.89 98.97 98.31 K multi_cassette Eph,I_chr4_631523_634240,I_chr4_631555_631910,I_chr4_631643_631910,I_chr4_632065_634240,I_chr4_632433_632707,I_chr4_632433_632988,I_chr4_639690_640473,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_631523_634240 chr4_631523_631910;chr4_632065_632138;chr4_632282_634240 chr4_631911_632064;chr4_632139_632281 chr4_631455_631522;chr4_634241_634340 100.00 NA NA 58.33 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA NA 75.00 NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA 100.00 NA NA NA NA NA 90.00 100.00 100.00 NA NA NA NA 92.31 NA 100.00 NA NA NA 83.33 NA NA NA K cassette CG8788,RI_chr2R_5026774_5028942,RI_chr2R_5033951_5034150,I_chr2R_5036518_5036570 chr2R + chr2R_5026774_5028942 chr2R_5026774_5027484;chr2R_5027804_5028942 chr2R_5027485_5027803 chr2R_5026674_5026773;chr2R_5028943_5029042 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N cassette CG33558,I_chr2R_2813804_2817753,I_chr2R_2814327_2817753,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2816779_2817753 chr2R_2816779_2817354;chr2R_2817604_2817753 chr2R_2817355_2817603 chr2R_2816679_2816778;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 82.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention rost chr2L - chr2L_8987288_8988935 chr2L_8987287_8987288;chr2L_8988935_8988936 chr2L_8986936_8987287;chr2L_8988936_8989229 0.00 1.75 1.29 0.77 0.00 1.40 0.00 0.67 2.31 0.00 0.00 1.50 0.00 0.00 1.38 1.22 1.39 1.65 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 1.26 0.00 0.00 0.63 0.00 0.00 2.38 0.00 0.00 0.00 0.00 1.83 0.00 0.00 2.04 0.00 1.98 1.67 1.21 0.00 0.00 0.00 0.00 0.00 1.01 1.00 0.00 0.00 K intron_retention CG13510,I_chr2R_18547479_18547540,R_chr2R_18548408_18548573,I_chr2R_18551419_18551493 chr2R + chr2R_18545781_18546427 chr2R_18545780_18545781;chr2R_18546427_18546428 chr2R_18545410_18545780;chr2R_18546428_18546928 0.00 0.00 NA NA NA NA NA NA NA 0.00 NA 25.00 NA NA NA NA NA NA NA 26.32 NA 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 NA NA NA NA 0.00 26.67 0.00 5.00 12.50 21.05 NA NA NA 21.05 0.00 0.00 6.25 NA NA 0.00 NA NA 0.00 0.00 NA NA 8.00 0.00 K jcn_only_AA CG6697 chr3R + chr3R_18887542_18887603 chr3R_18887542_18887598 chr3R_18887241_18887541;chr3R_18887604_18888474 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 96.77 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.31 100.00 NA 100.00 100.00 100.00 97.50 100.00 100.00 K cassette RhoGAP71E,I_chr3L_15583097_15589765 chr3L + chr3L_15594396_15599758;chr3L_15594396_15597935 chr3L_15594396_15594742;chr3L_15595616_15597935,chr3L_15595616_15599758 chr3L_15594743_15595615 chr3L_15594333_15594395;chr3L_15599759_15600439 89.76 90.86 87.57 88.00 90.30 95.24 88.95 82.83 88.52 91.36 89.76 90.70 76.67 89.26 90.64 97.08 87.39 88.55 86.61 87.74 90.32 65.09 88.89 91.09 89.47 77.48 91.26 93.81 84.85 92.34 92.00 87.86 90.08 88.79 89.06 90.57 87.56 89.36 89.97 91.56 91.14 86.29 88.98 86.18 86.22 86.53 90.58 87.19 90.91 91.62 89.50 90.37 90.75 90.91 91.62 93.79 92.68 89.93 K jcn_only_AA mfas,I_chr3R_7811954_7812017,I_chr3R_7818597_7818853,I_chr3R_7818607_7818853,RI_chr3R_7818607_7818970 chr3R - chr3R_7818607_7818970;chr3R_7818597_7818970 chr3R_7818575_7818970 chr3R_7818971_7818995;chr3R_7818507_7818574 65.27 58.52 58.99 62.39 58.46 74.03 65.00 66.95 61.72 60.34 63.74 64.06 65.10 58.82 61.07 65.27 61.69 66.13 66.26 72.43 58.14 69.95 71.26 70.49 74.29 62.76 63.24 69.35 70.73 62.90 62.16 82.22 72.48 65.08 82.86 74.07 62.50 63.24 76.19 62.03 74.07 66.42 56.52 64.04 79.45 67.82 76.92 71.83 61.63 66.23 64.29 69.33 80.00 63.33 64.18 66.67 70.71 72.87 K cassette I_chr3L_1494947_1496080,pUf68,I_chr3L_1499710_1499771,RI_chr3L_1499880_1501350 chr3L - chr3L_1499338_1501350;chr3L_1499338_1500244;chr3L_1499338_1501798 chr3L_1499338_1499771;chr3L_1499880_1501350,chr3L_1499880_1501798,chr3L_1499880_1500244 chr3L_1499772_1499879 chr3L_1499043_1499337;chr3L_1501799_1501892 8.20 6.76 6.56 18.75 3.77 5.26 0.00 14.10 6.80 7.55 12.20 16.67 45.10 6.25 4.88 9.46 7.27 6.25 6.49 8.08 11.11 10.14 11.11 11.11 10.64 2.44 7.25 12.07 7.55 13.21 5.88 7.27 14.89 6.86 8.33 12.00 8.33 9.09 10.13 7.48 10.91 6.14 7.02 17.39 7.58 10.98 13.85 4.95 7.83 12.16 14.61 11.48 6.12 10.00 7.79 15.07 8.20 5.19 K jcn_only_AD CG3631 chr3R + chr3R_10705483_10705553 chr3R_10705488_10705553 chr3R_10705554_10705765;chr3R_10705178_10705482 7.50 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 15.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K multi_cassette Nipped-B,I_chr2R_580301_580515,I_chr2R_580453_580515,I_chr2R_580989_582555,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_580301_582623 chr2R_580301_580358;chr2R_580453_580515;chr2R_580674_580752;chr2R_580989_582623 chr2R_580359_580452;chr2R_580516_580673;chr2R_580753_580988 chr2R_580236_580300;chr2R_582624_582655 100.00 100.00 100.00 96.15 90.00 93.33 98.08 97.62 97.96 100.00 100.00 97.37 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 95.45 100.00 86.67 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 96.15 92.31 91.67 86.67 100.00 100.00 100.00 100.00 K intron_retention CE_chrX_20766225_20927825,CG15449 chrX - chrX_20911187_20911411 chrX_20911186_20911187;chrX_20911411_20911412 chrX_20911063_20911186;chrX_20911412_20912271 100.00 NA NA NA NA NA 90.91 NA 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA 90.00 NA NA NA NA NA NA NA NA NA K alternative_donor rdx,I_chr3R_9796825_9822742,I_chr3R_9849617_9851443 chr3R - chr3R_9849617_9851560;chr3R_9849617_9851567 chr3R_9849617_9851443 chr3R_9849583_9849616;chr3R_9851568_9851588 22.65 NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA 22.22 NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 23.08 NA NA NA NA NA NA NA NA NA K jcn_only_AD Syx16,RI_chrX_20264319_20264376 chrX - chrX_20264319_20264380 chrX_20264319_20264376 chrX_20264219_20264318;chrX_20264381_20264476 1.68 4.62 1.52 2.50 2.78 6.56 1.33 1.10 0.76 0.00 0.00 3.01 0.00 0.00 2.60 0.00 2.27 1.45 1.54 2.29 1.92 0.00 3.19 1.77 4.92 3.03 1.30 0.00 3.20 1.22 2.67 1.12 2.38 3.37 3.80 7.69 2.25 2.22 0.77 0.70 0.00 2.63 0.00 1.06 1.81 0.79 3.70 1.68 1.12 1.94 2.30 0.00 2.50 0.00 1.25 2.91 1.12 0.00 K alternative_acceptor Cbp80,I_chrX_4545969_4549703,I_chrX_4551105_4551157 chrX + chrX_4551105_4551173 chrX_4551105_4551157 chrX_4551005_4551104;chrX_4551174_4551257 0.00 1.49 0.00 1.09 0.00 2.38 0.00 2.13 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 1.15 0.00 0.00 0.00 4.44 0.00 0.00 1.27 0.00 0.00 0.00 1.43 1.27 1.59 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette Mlf,noncoding_7111,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CEI_chr2R_11826763_11827279 chr2R - chr2R_11824086_11825951 chr2R_11824086_11825183;chr2R_11825385_11825619;chr2R_11825773_11825951 chr2R_11825184_11825384;chr2R_11825620_11825772 chr2R_11823989_11824085;chr2R_11825952_11826483 0.00 1.41 0.00 23.91 1.69 1.82 1.41 0.00 0.00 0.00 3.92 2.33 4.92 2.00 1.37 2.70 0.00 0.00 0.00 1.89 2.13 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 1.96 0.84 0.00 1.06 0.00 0.00 0.00 0.00 1.02 0.00 2.22 0.95 0.00 K intron_retention CG7852,Cct1,Cct2 chr3L + chr3L_1542737_1542812 chr3L_1542736_1542737;chr3L_1542812_1542813 chr3L_1542486_1542736;chr3L_1542813_1542958 0.00 0.00 NA 0.00 NA NA 25.00 0.00 8.00 3.45 NA 9.09 NA NA 16.67 NA NA NA 0.00 0.00 NA 16.39 0.00 7.14 12.50 NA 15.38 13.79 17.65 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 2.70 2.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 3.70 0.00 10.71 0.00 0.00 0.00 0.00 0.00 0.00 4.76 K jcn_only_AD Nedd4,I_chr3L_17532828_17532882,I_chr3L_17532828_17533787,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17532828_17533787 chr3L_17532837_17533787 chr3L_17533788_17533887;chr3L_17532728_17532827 94.38 NA NA NA NA NA NA NA 95.45 NA NA 82.14 NA NA NA NA NA NA NA NA NA NA 93.55 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA 95.83 90.48 NA 93.75 NA 95.00 NA NA NA 100.00 90.91 NA NA NA NA NA NA NA NA NA K intron_retention lola,I_chr2R_6380094_6419543,I_chr2R_6380747_6419543,I_chr2R_6394546_6419543,I_chr2R_6394664_6395833,I_chr2R_6397642_6398119,RI_chr2R_6403557_6403850,I_chr2R_6403557_6406705,I_chr2R_6404486_6419543,R_chr2R_6408775_6419537,I_chr2R_6409616_6419543,I_chr2R_6413368_6414281,I_chr2R_6419625_6419686,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6393579_6419543 chr2R_6393578_6393579;chr2R_6419543_6419544 chr2R_6393408_6393578;chr2R_6419544_6419624 13.07 11.39 13.19 11.27 11.90 12.22 36.21 11.18 17.19 10.42 15.62 10.07 16.92 19.18 10.40 23.48 7.89 10.75 10.47 13.76 7.14 6.25 16.07 16.13 23.08 17.02 15.22 42.11 10.11 7.00 11.65 14.89 6.70 10.67 14.93 12.36 16.81 13.64 11.82 13.07 8.00 10.99 15.28 15.05 13.04 13.46 13.51 7.87 13.11 11.11 15.69 21.74 8.06 14.29 12.50 17.02 21.62 10.81 K jcn_only_AA osa,I_chr3R_13523609_13523702 chr3R - chr3R_13523636_13523702 chr3R_13523639_13523702 chr3R_13523703_13523802;chr3R_13523387_13523635 95.66 94.27 98.37 94.92 95.92 95.19 96.73 95.62 96.86 96.89 92.31 94.36 93.75 95.16 97.44 95.88 95.45 94.97 95.80 95.21 97.30 96.43 93.42 95.62 95.11 97.89 93.85 92.97 94.12 96.45 94.48 96.11 95.83 97.50 94.15 96.46 93.26 96.40 96.84 96.71 95.73 96.36 97.39 94.06 95.90 96.62 95.24 95.66 96.00 93.53 94.12 92.44 98.25 92.00 95.26 97.27 95.74 95.36 K intron_retention Jupiter,I_chr3R_7417030_7419354,I_chr3R_7418347_7445425,RI_chr3R_7442793_7445425 chr3R - chr3R_7419077_7419354 chr3R_7419076_7419077;chr3R_7419354_7419355 chr3R_7419044_7419076;chr3R_7419355_7419454 60.00 NA NA 50.00 NA NA NA NA 70.00 NA NA 21.05 NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA 88.24 NA NA NA NA NA NA NA NA NA NA K intron_retention Fps85D,I_chr3R_5194729_5194776,I_chr3R_5216796_5218450 chr3R - chr3R_5195433_5198477 chr3R_5195432_5195433;chr3R_5198477_5198478 chr3R_5195058_5195432;chr3R_5198478_5198655 0.00 1.16 2.11 0.79 1.32 0.00 0.00 1.68 1.23 0.00 0.00 0.00 0.00 2.33 1.12 0.00 3.33 2.41 2.27 1.91 0.00 3.23 1.96 0.00 0.00 0.00 0.99 0.00 0.00 0.00 2.11 0.00 2.44 1.52 3.12 0.00 0.00 0.00 1.94 3.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 1.22 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 2.82 K alternative_acceptor CG2004,I_chrX_8608130_8608508,RI_chrX_8608147_8608508,I_chrX_8608169_8608438 chrX - chrX_8608169_8608508;chrX_8608130_8608508;chrX_8608150_8608508 chrX_8608147_8608508 chrX_8608509_8608538;chrX_8608069_8608129 0.00 4.76 0.00 0.00 7.14 0.00 12.00 3.57 4.65 10.53 0.00 0.00 0.00 4.76 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 6.67 4.88 8.70 0.00 5.00 0.00 9.09 3.23 4.55 0.00 0.00 8.70 0.00 0.00 0.00 4.65 0.00 0.00 0.00 6.45 0.00 9.09 4.55 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention hts,I_chr2R_15286599_15294119,CG34197,I_chr2R_15293594_15294119,RI_chr2R_15294446_15295345,I_chr2R_15294825_15295345,I_chr2R_15295410_15295479,I_chr2R_15311185_15312327,I_chr2R_15311303_15312026 chr2R - chr2R_15286599_15295345 chr2R_15286598_15286599;chr2R_15295345_15295346 chr2R_15286531_15286598;chr2R_15295346_15295409 3.90 8.06 5.00 8.57 5.56 4.60 6.85 4.59 5.62 30.77 5.88 3.45 2.78 6.33 6.17 10.00 1.82 4.11 8.64 3.90 10.64 0.00 7.58 3.45 2.22 3.41 2.63 8.33 3.77 2.70 4.04 0.00 0.00 5.22 0.00 4.00 3.33 4.44 3.45 3.75 2.27 6.21 5.63 4.26 0.00 2.22 0.00 1.65 3.57 3.39 2.56 0.00 1.56 5.56 4.84 3.12 3.92 2.04 K intron_retention CG5594,CG2812 chr2R + chr2R_19800358_19800419 chr2R_19800357_19800358;chr2R_19800419_19800420 chr2R_19800252_19800357;chr2R_19800420_19800549 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 8.65 0.00 0.00 1.28 0.00 1.12 0.00 12.07 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA CG31751,RI_chr2L_18677311_18677391,RI_chr2L_18677473_18677932 chr2L + chr2L_18677473_18682264;chr2L_18677473_18677932 chr2L_18677473_18678838 chr2L_18677392_18677472 95.34 NA NA 61.90 NA NA NA NA 100.00 NA 91.67 95.24 NA NA NA NA NA NA NA 95.45 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.32 NA NA NA NA NA NA 95.83 NA NA NA NA NA 100.00 NA NA 88.00 K alternative_donor endos,I_chr3L_14024099_14024488,I_chr3L_14024103_14024158,I_chr3L_14024103_14024546,noncoding_12505,I_chr3L_14024496_14024546 chr3L - chr3L_14024103_14024546;chr3L_14024103_14024158;chr3L_14024103_14024407 chr3L_14024103_14024488 chr3L_14024003_14024102;chr3L_14024547_14024588 93.94 93.75 94.12 96.15 93.94 97.18 92.71 98.44 93.30 91.04 97.40 95.28 94.19 96.05 98.13 93.40 97.22 97.56 97.00 94.94 98.68 83.64 85.39 89.74 92.16 98.84 96.97 91.23 90.32 93.55 95.95 95.06 75.86 94.12 93.94 96.36 91.03 86.89 92.50 91.97 93.94 93.71 94.52 97.10 93.88 92.92 94.59 93.41 95.42 87.76 96.15 98.44 95.00 90.14 96.88 89.02 92.86 91.79 K alternative_donor Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045251_16046104;chr3L_16045316_16046104;chr3L_16045277_16046104 chr3L_16045275_16046104 chr3L_16046105_16046204;chr3L_16045216_16045250 24.66 29.03 27.50 21.62 30.43 25.00 26.92 25.00 29.33 9.09 31.03 27.03 28.89 30.61 14.58 26.56 24.32 38.46 24.14 20.99 25.81 17.54 27.78 29.41 28.57 26.32 19.15 20.00 23.81 15.09 18.87 13.04 18.33 23.33 26.47 32.43 26.92 17.86 31.25 18.75 20.69 23.86 25.58 20.00 13.04 21.21 22.22 14.29 28.95 35.71 25.64 25.00 13.33 NA 30.51 20.83 16.67 8.93 K intron_retention Dscam,F_chr2R_3219886_3228832,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3219708_3219765 chr2R_3219707_3219708;chr2R_3219765_3219766 chr2R_3218481_3219707;chr2R_3219766_3219885 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.92 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 K cassette Reps,I_chr2L_11105525_11105656 chr2L - chr2L_11103170_11103843 chr2L_11103170_11103322;chr2L_11103410_11103843 chr2L_11103323_11103409 chr2L_11100956_11103169;chr2L_11103844_11104280 7.69 7.41 4.35 7.41 6.67 9.52 0.00 5.71 5.77 21.43 4.55 5.26 5.56 0.00 7.41 14.29 5.56 7.69 6.25 5.56 4.76 38.89 7.69 12.12 22.73 0.00 12.12 14.29 12.00 3.33 4.76 12.50 15.38 2.94 8.00 18.18 13.04 8.33 8.57 6.52 7.69 6.12 6.67 7.41 27.78 14.29 16.67 13.04 9.09 15.00 3.70 10.53 4.35 7.69 4.76 15.38 9.68 7.69 K jcn_only_AD CG15309,RI_chrX_10102328_10103556,RI_chrX_10102328_10104750 chrX - chrX_10102328_10106185 chrX_10102328_10104040 chrX_10102228_10102327;chrX_10106186_10106379 8.70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.70 K intron_retention mRpS11,I_chr3R_12898717_12898778 chr3R + chr3R_12899061_12899223 chr3R_12899060_12899061;chr3R_12899223_12899224 chr3R_12898960_12899060;chr3R_12899224_12899289 0.00 0.00 0.00 3.12 0.00 0.00 0.00 1.89 2.90 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 1.54 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 K jcn_only_AA Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045275_16046104;chr3L_16045275_16046111 chr3L_16045275_16045854 chr3L_16045255_16045274;chr3L_16046112_16046204 7.14 5.00 3.70 2.86 NA 0.00 7.14 0.00 7.94 NA 4.17 10.42 12.90 6.90 5.00 8.33 14.29 10.71 10.00 6.82 0.00 NA 7.41 10.00 NA 8.33 NA NA 11.11 NA 8.33 NA 4.17 2.00 NA 19.23 0.00 NA NA 0.00 NA 8.33 14.29 0.00 NA 10.00 NA 8.57 0.00 NA NA NA NA NA 2.70 NA NA NA K intron_retention CG31522,I_chr3R_270285_272146,I_chr3R_270285_272461,I_chr3R_271138_271887,I_chr3R_272255_272359,RI_chr3R_273677_279264 chr3R - chr3R_271138_272146 chr3R_271137_271138;chr3R_272146_272147 chr3R_271054_271137;chr3R_272147_272246 3.85 0.00 0.00 9.52 0.00 0.00 13.64 2.22 10.87 NA NA 3.70 NA 0.00 17.65 10.00 0.00 NA 9.52 0.00 NA 15.00 0.00 3.70 0.00 6.25 0.00 NA NA 4.35 NA NA NA 7.50 NA 10.53 3.85 0.00 12.12 0.00 NA 0.00 0.00 5.00 NA 11.11 4.76 13.33 9.26 5.00 5.13 NA NA 0.00 7.69 0.00 0.00 NA K intron_retention RpII215,I_chrX_11466174_11466223 chrX - chrX_11463320_11463918 chrX_11463319_11463320;chrX_11463918_11463919 chrX_11461076_11463319;chrX_11463919_11464438 2.91 2.45 2.58 4.50 2.31 2.05 3.63 1.92 1.86 2.91 1.43 2.68 7.63 0.91 3.41 4.23 1.65 1.54 4.67 4.15 2.27 2.39 2.03 3.41 1.78 1.27 2.43 7.11 10.98 1.63 2.86 6.78 3.38 3.20 2.91 0.98 0.56 1.90 1.26 2.82 8.70 2.20 3.51 1.83 13.04 6.80 4.42 6.49 3.46 5.13 2.22 4.42 5.49 7.69 3.85 4.95 5.19 4.35 K intron_retention CG1737 chrX + chrX_11247633_11247689 chrX_11247632_11247633;chrX_11247689_11247690 chrX_11245724_11247632;chrX_11247690_11248794 100.00 98.39 100.00 100.00 100.00 100.00 98.33 100.00 99.15 97.50 100.00 98.92 100.00 100.00 100.00 98.08 100.00 100.00 97.62 99.26 100.00 98.90 99.10 100.00 100.00 100.00 98.68 100.00 100.00 98.55 100.00 100.00 98.94 98.68 100.00 100.00 98.33 98.77 100.00 100.00 98.08 100.00 100.00 98.33 98.57 100.00 100.00 98.65 100.00 100.00 98.80 100.00 100.00 98.55 100.00 97.01 100.00 98.00 K intron_retention Art1 chr3R - chr3R_6613771_6613833 chr3R_6613770_6613771;chr3R_6613833_6613834 chr3R_6613495_6613770;chr3R_6613834_6613927 0.00 0.00 0.00 1.98 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor gw,I_chr4_672810_672930,I_chr4_679135_681671 chr4 - chr4_671657_672930 chr4_672810_672930 chr4_672931_673030;chr4_670618_671656 1.24 0.99 1.92 1.05 1.16 1.05 1.09 1.99 1.79 2.27 1.12 1.99 3.88 1.75 0.88 2.67 0.89 1.02 1.50 0.76 1.03 1.87 0.76 0.88 2.22 1.57 2.40 3.33 1.79 0.96 0.78 1.23 0.80 1.38 1.23 1.24 0.75 1.39 0.76 1.94 2.67 1.27 0.97 0.81 2.27 1.47 0.91 1.65 1.32 1.94 1.52 1.15 0.00 1.32 1.31 0.88 0.61 0.48 K jcn_only_AA CG5991 chr3R + chr3R_19876703_19877425;chr3R_19876703_19877421 chr3R_19876703_19877411 chr3R_19876688_19876702;chr3R_19877426_19877477 61.98 NA NA 66.67 NA NA 58.06 55.56 58.97 NA NA 62.50 NA NA 37.93 72.41 70.00 NA 68.00 44.44 NA NA NA NA NA 65.38 NA NA NA NA NA NA 68.00 61.76 NA 68.18 NA NA NA 60.53 73.91 62.79 59.09 NA NA 62.07 NA 60.87 65.22 NA 56.52 NA NA NA 54.29 NA NA 61.90 K intron_retention LamC chr2R - chr2R_10458817_10458964 chr2R_10458816_10458817;chr2R_10458964_10458965 chr2R_10458387_10458816;chr2R_10458965_10459687 48.48 28.89 62.50 56.76 65.38 62.07 66.67 55.00 67.24 31.58 80.00 56.90 63.16 60.00 62.07 72.41 76.47 92.86 54.17 66.67 86.67 34.21 48.94 48.48 44.00 81.48 41.18 25.00 29.41 39.39 65.22 23.08 55.17 65.00 56.25 40.91 44.93 36.96 33.90 35.29 22.22 59.65 55.00 28.33 9.38 17.14 26.92 44.12 65.91 8.24 43.40 44.00 33.33 7.69 72.00 16.67 8.33 36.36 K cassette CG17273,I_chr3R_16652066_16655997,REI_chr3R_16652421_16653701,I_chr3R_16653805_16654088 chr3R - chr3R_16652066_16655997 chr3R_16652066_16653701;chr3R_16653805_16655997 chr3R_16653702_16653804 chr3R_16651966_16652065;chr3R_16655998_16656097 99.35 99.33 99.26 99.07 99.67 99.69 99.42 99.59 99.86 99.35 99.66 99.69 99.64 99.61 100.00 99.75 99.61 99.62 99.67 99.87 99.64 99.17 98.92 99.54 97.72 99.37 98.66 98.71 97.47 99.18 99.71 98.72 99.69 99.59 98.77 98.53 99.40 98.76 98.69 99.03 98.81 99.41 99.62 99.04 98.39 99.58 99.00 99.06 98.89 99.10 98.90 99.18 99.67 99.76 99.19 99.22 100.00 98.92 K jcn_only_AA Adam,I_chr2R_5856741_5856974,I_chr2R_5856741_5857245,I_chr2R_5857058_5857250,I_chr2R_5857078_5857245 chr2R + chr2R_5857058_5857250 chr2R_5857058_5857245 chr2R_5856978_5857057;chr2R_5857251_5857345 100.00 99.60 100.00 99.70 100.00 100.00 100.00 100.00 99.79 99.13 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.46 98.91 100.00 99.66 100.00 99.71 100.00 100.00 100.00 100.00 99.68 100.00 99.49 99.79 100.00 100.00 99.83 99.29 100.00 99.49 99.41 100.00 99.75 99.69 100.00 100.00 99.70 98.98 100.00 100.00 100.00 100.00 100.00 99.74 100.00 K jcn_only_AD l(2)gl,I_chr2L_17150_19884,I_chr2L_17208_18260,RI_chr2L_17213_18330,I_chr2L_17213_21135,RI_chr2L_20021_20830,I_chr2L_20974_21065 chr2L - chr2L_17213_18330;chr2L_17213_19879 chr2L_17213_18025 chr2L_17113_17212 3.24 0.00 0.00 0.00 4.76 4.35 5.00 2.70 1.94 NA NA 0.00 0.00 0.00 0.00 3.03 0.00 4.17 5.77 1.75 NA 5.00 5.13 3.45 NA NA 8.33 NA 6.90 5.88 0.00 NA 24.14 4.41 0.00 NA 4.35 0.00 NA 14.29 NA 0.00 0.00 2.56 NA 4.00 NA 1.72 0.00 NA 5.71 4.35 NA NA 4.26 NA NA 4.55 K intron_retention gus,I_chr2R_1009158_1009345,RI_chr2R_1009158_1011540,I_chr2R_1009346_1015730 chr2R - chr2R_1009158_1009487 chr2R_1009157_1009158;chr2R_1009487_1009488 chr2R_1009058_1009157;chr2R_1009488_1009568 0.00 NA NA 0.00 NA NA 4.00 0.00 6.25 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA 15.38 NA NA NA NA NA NA 4.76 NA NA NA NA NA NA NA 9.09 NA NA NA NA NA NA 0.00 NA 12.50 NA NA NA 0.00 NA NA NA K alternative_donor CG9932,I_chr2L_13025498_13027193,I_chr2L_13031395_13035824 chr2L - chr2L_13025498_13027065;chr2L_13025498_13027344 chr2L_13025498_13026528 chr2L_13025398_13025497;chr2L_13027345_13027744 77.31 86.21 64.52 70.13 83.33 64.29 72.22 58.06 77.94 87.76 59.52 64.89 44.19 75.47 73.21 71.79 64.58 77.08 60.71 74.56 70.45 82.61 80.81 84.06 84.31 78.05 77.92 81.58 75.93 75.64 69.81 74.36 77.31 74.47 75.38 83.33 85.00 91.53 83.96 95.41 75.56 72.13 83.78 78.21 76.79 79.69 81.25 78.00 72.22 80.65 81.25 83.33 82.98 81.08 69.35 80.85 83.33 72.00 K jcn_only_AA CG5793,I_chr3R_16953555_16953842 chr3R + chr3R_16953940_16954089 chr3R_16953940_16954068 chr3R_16953843_16953939;chr3R_16954090_16954215 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 98.61 NA 95.65 100.00 100.00 100.00 100.00 100.00 100.00 96.30 96.67 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG4980 chr3R - chr3R_23747854_23747920 chr3R_23747853_23747854;chr3R_23747920_23747921 chr3R_23746970_23747853;chr3R_23747921_23748082 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 3.28 0.00 0.00 0.00 NA 4.88 NA 5.97 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.86 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 1.06 0.00 N alternative_acceptor Hsc70-5 chr2R - chr2R_10143221_10143338 chr2R_10143254_10143338 chr2R_10143339_10143532;chr2R_10143174_10143220 0.27 0.00 0.51 0.00 0.00 0.00 1.50 0.68 0.52 0.50 0.85 0.30 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.27 0.57 0.88 0.00 0.29 0.32 1.27 0.00 0.45 0.00 0.95 0.00 0.00 0.55 0.29 0.00 0.00 0.41 0.00 0.26 0.00 0.30 0.53 0.92 0.00 1.27 0.69 0.80 0.36 1.15 0.00 0.72 0.00 0.54 0.00 0.00 K intron_retention CG3191,CG3091,I_chrX_2147635_2147990 chrX - chrX_2145388_2145704 chrX_2145387_2145388;chrX_2145704_2145705 chrX_2145228_2145387;chrX_2145705_2145851 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 17.65 NA NA NA NA NA NA NA NA NA 0.00 14.29 NA NA NA NA NA NA 0.00 23.08 NA NA NA 15.38 21.43 NA 9.09 NA NA NA NA NA NA NA NA NA 12.50 K alternative_donor RpL15 chr3LHet + chr3LHet_2398018_2398127;chr3LHet_2397859_2398127;chr3LHet_2397925_2398127;chr3LHet_2397992_2398127;chr3LHet_2398060_2398127;chr3LHet_2398002_2398127;chr3LHet_2397820_2398127;chr3LHet_2398053_2398127 chr3LHet_2397841_2398127 chr3LHet_2398128_2398454;chr3LHet_2397802_2397819 0.00 0.00 0.00 0.69 0.00 0.00 1.39 0.73 0.00 4.17 0.00 0.00 0.00 0.00 1.56 0.00 1.23 3.33 1.04 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 1.89 0.00 0.46 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.22 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 K intron_retention CG5537,I_chr3L_5804425_5804485 chr3L + chr3L_5804421_5804485 chr3L_5804420_5804421;chr3L_5804485_5804486 chr3L_5804325_5804420;chr3L_5804486_5804585 6.98 3.57 2.00 13.89 8.70 9.86 13.89 5.26 6.21 13.73 8.82 4.11 3.33 6.56 9.30 5.32 4.17 4.82 5.41 5.05 5.19 36.67 8.40 6.76 11.59 16.67 11.50 6.02 17.39 4.44 14.43 6.98 13.54 4.72 7.89 23.08 7.38 5.43 6.13 7.14 15.15 7.38 3.39 5.50 6.62 8.33 8.09 11.70 3.73 6.96 9.56 7.46 3.54 6.56 4.95 7.14 5.92 8.18 K alternative_acceptor Eno,EI_chr2L_1727403_1727645,I_chr2L_1728229_1728302 chr2L - chr2L_1728229_1728302 chr2L_1728233_1728302 chr2L_1728303_1728402;chr2L_1728129_1728228 76.47 91.67 80.00 75.00 NA NA 58.33 92.31 68.75 NA NA 82.14 NA 66.67 70.00 83.33 NA NA 91.67 73.33 NA NA 90.00 69.23 NA NA NA NA 60.00 88.89 73.68 NA 90.00 75.00 NA NA NA NA NA 62.50 NA 76.47 72.73 80.00 87.50 72.73 75.00 71.43 80.00 NA 83.33 NA NA 87.50 88.89 NA 87.50 64.29 K alternative_donor Trn chr3L + chr3L_6186644_6187144 chr3L_6186723_6187144 chr3L_6187145_6187250;chr3L_6186603_6186643 93.33 88.24 95.00 93.33 90.91 95.65 90.00 97.30 92.19 87.50 93.75 97.37 80.95 95.45 93.33 93.88 91.67 81.82 91.67 93.62 95.24 97.30 100.00 90.00 90.00 95.83 92.86 95.00 90.91 90.91 89.29 NA 100.00 84.21 93.33 100.00 94.74 88.89 83.33 100.00 NA 95.12 80.95 90.48 NA NA 85.71 93.33 100.00 NA 93.33 100.00 100.00 NA 92.00 NA NA 83.33 K intron_retention Cp1,Aats-phe chr2R + chr2R_9854475_9854534 chr2R_9854474_9854475;chr2R_9854534_9854535 chr2R_9854260_9854474;chr2R_9854535_9855489 0.30 0.24 0.13 0.24 0.28 0.26 0.23 0.27 0.32 0.31 0.06 0.44 0.31 0.44 0.31 0.36 0.31 0.28 0.29 0.17 0.33 0.30 0.32 0.30 0.18 0.08 0.60 0.79 0.34 0.39 0.08 0.16 0.30 0.35 0.38 0.48 0.28 0.26 0.25 0.25 0.39 0.19 0.14 0.22 0.26 0.39 0.41 0.30 0.32 0.43 0.32 0.22 0.13 0.26 0.16 0.30 0.41 0.23 N jcn_only_AA CG8790 chr3R + chr3R_9190952_9191016;chr3R_9190952_9193460;chr3R_9190952_9193295 chr3R_9190952_9193285 chr3R_9190661_9190951 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention aux chr3R + chr3R_52182_52251 chr3R_52181_52182;chr3R_52251_52252 chr3R_51256_52181;chr3R_52252_52413 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 2.99 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 2.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 K alternative_donor opa1-like,I_chr2R_10119470_10120234,I_chr2R_10121848_10121900,I_chr2R_10122128_10122197,I_chr2R_10122334_10122393 chr2R - chr2R_10119470_10120220;chr2R_10119470_10120229 chr2R_10119470_10120234 chr2R_10119370_10119469;chr2R_10120235_10120334 0.00 0.00 2.33 1.20 2.04 0.00 1.41 1.43 0.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 1.69 2.50 0.00 2.56 3.12 0.00 0.00 1.49 0.00 2.22 1.19 0.00 0.00 0.00 8.33 1.06 0.00 1.56 3.12 2.27 1.59 3.23 0.00 0.00 1.43 0.00 0.00 0.00 1.79 1.79 0.00 0.00 K jcn_only_AA CG3308,I_chr3R_17098558_17099131,I_chr3R_17099005_17099062 chr3R - chr3R_17098558_17099062 chr3R_17099005_17099062 chr3R_17099063_17099162;chr3R_17098458_17098557 0.54 0.00 0.76 0.51 1.14 0.00 1.97 0.00 0.33 1.43 0.00 0.00 0.00 0.00 0.75 0.66 0.00 2.34 0.84 0.00 0.00 1.89 0.00 1.03 0.00 1.65 0.00 1.02 1.57 0.00 1.55 0.00 0.00 0.00 0.74 1.44 0.00 0.52 1.77 0.54 0.76 0.39 1.01 0.61 0.66 0.62 0.93 0.43 0.45 0.00 0.00 1.03 0.00 0.74 0.56 0.00 0.71 1.12 K multi_cassette CG17471,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1216718_1217383 chr4_1216718_1216813;chr4_1216889_1216945;chr4_1217104_1217383 chr4_1216814_1216888;chr4_1216946_1217103 chr4_1216618_1216717;chr4_1217384_1217398 82.57 75.00 66.67 59.09 83.33 62.50 84.21 92.00 81.25 NA NA 70.00 100.00 60.00 70.00 86.36 100.00 83.33 75.00 84.62 83.33 NA 100.00 100.00 NA NA 100.00 NA NA NA 73.33 NA NA 76.47 85.71 NA NA NA NA 85.71 83.33 81.82 90.00 55.56 75.00 66.67 NA 85.71 78.26 100.00 100.00 80.00 NA NA 81.82 75.00 100.00 80.00 K intron_retention CG14411 chrX + chrX_14726994_14727176 chrX_14726993_14726994;chrX_14727176_14727177 chrX_14726671_14726993;chrX_14727177_14730337 0.00 1.16 1.61 3.28 0.00 0.00 2.90 1.27 2.08 0.00 0.00 2.94 0.00 0.00 3.57 0.00 5.26 0.00 3.77 4.60 0.00 2.38 0.00 0.00 1.82 0.00 0.76 5.08 1.68 0.00 0.00 0.00 3.05 0.00 0.00 0.00 0.00 0.00 0.00 1.65 3.96 0.00 0.00 0.00 0.88 2.34 0.00 3.23 1.11 0.86 0.00 0.00 0.00 0.00 0.00 3.09 2.70 3.57 N alternative_donor TSG101 chr3L + chr3L_16835972_16836255 chr3L_16835977_16836255 chr3L_16836256_16836333;chr3L_16835892_16835971 100.00 NA NA NA NA NA 100.00 100.00 100.00 NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 45.45 NA 100.00 NA NA NA 100.00 100.00 NA 100.00 NA 100.00 NA NA NA NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 NA K intron_retention CG8451 chr2L - chr2L_8203247_8203313 chr2L_8203246_8203247;chr2L_8203313_8203314 chr2L_8203087_8203246;chr2L_8203314_8203445 22.73 25.00 16.67 14.81 23.08 20.00 28.95 18.52 20.97 33.33 23.08 22.73 15.79 27.78 21.62 16.28 15.38 19.35 21.05 14.81 13.79 22.73 25.58 28.57 21.74 20.83 22.22 NA 36.84 25.00 23.08 24.14 6.25 14.06 18.52 21.05 24.14 23.08 21.43 23.68 34.62 13.51 25.00 26.00 39.39 23.26 43.75 20.51 16.42 47.83 24.14 19.05 NA 30.77 17.31 42.31 27.27 22.22 K intron_retention zip,I_chr2R_20878796_20879147 chr2R - chr2R_20898140_20898898 chr2R_20898139_20898140;chr2R_20898898_20898899 chr2R_20897903_20898139;chr2R_20898899_20898979 17.18 16.95 13.30 14.18 19.11 14.12 20.95 12.89 17.44 15.24 16.00 13.71 15.13 12.50 17.04 15.61 17.62 12.72 13.79 20.12 12.82 33.33 18.87 27.78 30.00 13.89 39.29 14.67 22.73 27.32 11.83 19.88 21.13 14.98 13.33 33.96 19.35 28.57 19.67 17.19 24.24 14.77 13.04 17.17 21.65 15.90 14.29 17.15 12.53 25.93 22.45 18.18 17.95 NA 14.05 18.92 17.31 17.31 K cassette Xrp1,I_chr3R_14741648_14750799,I_chr3R_14750298_14750799 chr3R + chr3R_14745235_14750799 chr3R_14745235_14746134;chr3R_14747042_14750799 chr3R_14746135_14747041 chr3R_14745145_14745234;chr3R_14750800_14750899 97.11 96.93 98.33 96.05 97.03 97.05 90.02 92.63 95.91 98.50 93.44 96.36 94.60 97.10 96.67 96.58 96.48 96.69 95.56 97.11 95.21 98.82 98.33 98.66 97.19 96.82 96.89 97.01 97.93 97.89 98.77 97.76 99.20 94.90 97.27 98.82 99.08 98.61 99.02 97.36 97.38 96.71 96.27 97.78 99.28 97.43 98.17 98.05 94.83 97.01 96.53 97.32 98.34 97.87 96.23 98.52 95.02 98.61 K intron_retention CG18317,RI_chr2L_1718492_1723881 chr2L - chr2L_1717816_1717877 chr2L_1717815_1717816;chr2L_1717877_1717878 chr2L_1717598_1717815;chr2L_1717878_1718151 0.00 0.00 0.00 3.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.26 7.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17389985_17394826 chr2R_17389984_17389985;chr2R_17394826_17394827 chr2R_17389891_17389984;chr2R_17394827_17394906 36.06 NA NA 30.77 NA NA 33.33 33.33 36.84 NA NA 33.33 NA 33.33 NA 38.46 NA NA NA NA NA 35.29 NA NA NA NA NA NA NA NA NA NA NA 38.46 NA NA NA NA NA NA NA NA NA 42.86 NA NA NA NA 43.75 NA 41.67 NA NA NA NA NA NA NA K cassette Dscam,I_chr2R_3237222_3249222,I_chr2R_3238411_3249222,I_chr2R_3238587_3249222,CEF_chr2R_3238803_3249222,I_chr2R_3239090_3249222,FI_chr2R_3239545_3249222,F_chr2R_3240528_3249222,FI_chr2R_3241198_3249222,FI_chr2R_3242511_3249222,FI_chr2R_3242716_3249222,F_chr2R_3244156_3249222,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3236481_3249222 chr2R_3236481_3248030;chr2R_3248155_3249222 chr2R_3248031_3248154 chr2R_3236381_3236480;chr2R_3249223_3249322 50.00 NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA Hrb98DE,I_chr3R_24425722_24428493,I_chr3R_24426291_24426781,RI_chr3R_24429041_24431183 chr3R + chr3R_24426291_24426439 chr3R_24426291_24426427 chr3R_24426191_24426290;chr3R_24426440_24426915 43.78 42.55 47.69 45.82 43.96 45.56 37.35 53.44 43.20 43.48 42.11 43.35 39.57 43.24 44.50 47.12 45.54 46.53 49.65 43.38 NA 42.55 39.46 44.08 37.98 62.36 41.63 34.59 45.88 47.70 43.61 44.93 47.26 52.51 41.38 49.57 42.11 39.83 41.99 41.35 46.38 46.00 52.50 39.11 49.74 45.12 36.49 51.14 44.44 41.71 42.32 50.51 37.58 38.50 46.93 41.80 42.65 44.49 K intron_retention eIF4G,E_chr4_936686_936751,I_chr4_948813_950447 chr4 - chr4_936686_936746 chr4_936685_936686;chr4_936746_936747 chr4_936586_936685;chr4_936747_936893 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17180812_17181479 chr3R - chr3R_17180417_17200781 chr3R_17180417_17180695;chr3R_17180812_17200781 chr3R_17180696_17180811 chr3R_17180195_17180416;chr3R_17200782_17200881 100.00 100.00 100.00 100.00 100.00 NA 88.89 100.00 100.00 NA 100.00 100.00 NA 85.71 100.00 100.00 NA NA 100.00 100.00 100.00 NA 94.12 93.33 100.00 NA 100.00 NA 100.00 100.00 90.91 90.91 90.00 90.91 90.00 100.00 90.91 100.00 90.91 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 94.12 100.00 100.00 92.86 100.00 90.91 93.33 100.00 K alternative_donor CG32163 chr3L + chr3L_16580348_16580609;chr3L_16580557_16580609 chr3L_16580506_16580609 chr3L_16580610_16580996;chr3L_16580335_16580347 0.00 0.00 8.33 0.00 20.00 0.00 21.05 21.43 19.05 NA 0.00 21.43 0.00 16.67 0.00 5.26 14.29 0.00 6.67 7.69 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 25.00 NA 9.09 11.11 NA 7.14 NA NA 0.00 0.00 0.00 0.00 NA 6.25 20.00 0.00 14.29 0.00 0.00 NA 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 7.14 K intron_retention CG17665 chr2R - chr2R_124362_124418 chr2R_124361_124362;chr2R_124418_124419 chr2R_124204_124361;chr2R_124419_124591 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 8.33 9.52 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA KdelR,CG5188 chr2L + chr2L_10427004_10427075 chr2L_10427004_10427052 chr2L_10426867_10427003;chr2L_10427076_10428159 0.62 1.24 0.52 0.39 0.63 0.32 1.31 0.40 0.73 0.45 0.65 0.64 0.57 1.62 1.14 0.78 0.38 0.59 0.79 0.65 0.53 0.37 1.16 1.41 1.76 0.54 1.83 7.82 0.00 0.00 1.40 0.00 0.56 0.00 1.38 0.67 0.72 0.28 0.62 0.58 1.28 0.45 0.75 0.51 0.92 0.81 0.75 1.59 0.45 0.62 0.50 0.28 0.80 0.00 0.90 0.00 0.45 0.00 K intron_retention CG30001 chr2R - chr2R_5709947_5710009 chr2R_5709946_5709947;chr2R_5710009_5710010 chr2R_5709852_5709946;chr2R_5710010_5710119 32.05 NA NA 19.05 NA NA NA 30.77 NA NA NA NA NA NA NA NA NA NA NA 35.71 NA NA 30.77 NA NA NA NA NA NA NA 61.11 NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention BEAF-32,I_chr2R_10658570_10659304,noncoding_6875 chr2R + chr2R_10659148_10659304 chr2R_10659147_10659148;chr2R_10659304_10659305 chr2R_10658827_10659147;chr2R_10659305_10659323 2.27 0.00 0.00 5.56 5.00 0.00 4.35 6.52 2.90 0.00 2.86 5.63 0.00 10.53 4.55 10.71 0.00 0.00 0.00 4.65 4.65 0.00 0.00 3.57 5.71 0.00 0.00 3.12 0.00 0.00 14.29 0.00 4.29 11.63 0.00 0.00 0.00 0.00 1.92 0.00 0.00 2.82 6.90 0.00 4.17 0.00 2.38 0.00 8.06 2.90 0.00 5.71 3.28 2.27 6.67 2.22 7.27 0.00 K alternative_donor CG40485 chrX - chrX_22363297_22363599 chrX_22363297_22363595 chrX_22363005_22363296;chrX_22363600_22364196 3.45 4.00 0.00 NA NA 0.00 0.00 6.67 6.67 NA 0.00 0.00 NA NA 4.00 3.45 NA 4.17 5.00 0.00 NA 4.55 3.85 3.85 NA 6.67 0.00 0.00 6.25 0.00 3.45 0.00 2.86 3.45 0.00 NA 2.56 0.00 2.56 2.44 6.67 8.33 NA 3.03 0.00 6.90 2.27 15.00 0.00 10.71 3.45 4.35 0.00 0.00 4.35 5.56 2.33 7.41 K intron_retention RI_chr2R_16552969_16554423,exu chr2R - chr2R_16555788_16556079 chr2R_16555787_16555788;chr2R_16556079_16556080 chr2R_16554924_16555787;chr2R_16556080_16557400 24.41 7.69 NA 63.64 NA NA NA 23.81 18.18 NA NA 40.00 NA 21.43 25.00 36.84 NA NA 17.65 50.00 14.29 NA NA 14.29 NA NA 46.15 NA NA NA 43.75 NA NA 22.22 NA NA 11.11 NA NA 28.57 NA 25.00 NA NA NA 19.05 21.43 NA 18.18 50.00 10.00 NA NA 46.67 25.00 15.00 25.00 36.36 K cassette Gug,R_chr3L_8444636_8444874,I_chr3L_8455244_8456103,I_chr3L_8463933_8464047 chr3L + chr3L_8463584_8464251 chr3L_8463584_8463854;chr3L_8464140_8464251 chr3L_8463855_8464139 chr3L_8463540_8463583;chr3L_8464252_8465061 95.92 94.44 100.00 87.50 95.00 94.74 96.00 100.00 97.96 100.00 100.00 93.88 95.65 96.00 95.45 100.00 96.30 90.00 97.06 100.00 100.00 94.74 93.02 100.00 94.44 100.00 95.65 100.00 91.43 93.33 93.10 94.12 96.55 100.00 95.65 90.00 96.67 95.45 89.29 95.92 95.83 98.04 100.00 97.30 100.00 100.00 95.00 100.00 95.83 95.45 96.77 95.45 100.00 100.00 100.00 95.65 90.48 94.74 N multi_cassette CG17528,I_chr2R_705620_705713,I_chr2R_705649_705720,RI_chr2R_706735_711409,I_chr2R_706735_711443,I_chr2R_707374_711443 chr2R - chr2R_705440_711615 chr2R_705440_705502;chr2R_705649_705713;chr2R_706735_711615 chr2R_705503_705648;chr2R_705714_706734 chr2R_705290_705439;chr2R_711616_711627 100.00 100.00 100.00 52.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA ena chr2R + chr2R_15047541_15047756;chr2R_15047541_15047681;chr2R_15047541_15047684 chr2R_15047541_15047753 chr2R_15047496_15047540;chr2R_15047757_15048407 3.36 3.15 6.25 3.02 4.12 4.26 2.78 4.96 4.07 3.36 3.85 1.57 4.02 2.05 3.37 2.84 3.72 6.45 0.40 4.18 6.20 1.17 2.60 2.68 2.75 1.97 1.77 4.08 3.96 4.13 3.43 2.55 2.99 4.43 2.55 2.36 4.76 1.49 3.79 2.87 1.34 4.20 3.19 2.62 2.76 0.94 3.18 4.65 5.12 2.91 3.99 4.64 5.37 3.55 2.50 2.65 3.90 4.48 K multi_cassette CG18659,E_chr2R_5011363_5019110,RI_chr2R_5013572_5014531,I_chr2R_5016147_5016997 chr2R - chr2R_5011651_5014923 chr2R_5011651_5012248;chr2R_5012726_5013055;chr2R_5013572_5014923 chr2R_5012249_5012725;chr2R_5013056_5013571 chr2R_5011194_5011650;chr2R_5014924_5015382 98.21 98.28 97.37 86.27 100.00 97.22 96.15 97.78 97.47 100.00 96.00 98.78 100.00 100.00 97.50 100.00 100.00 100.00 100.00 96.88 86.11 83.75 95.51 98.68 98.31 96.97 98.61 97.18 98.67 96.77 100.00 98.21 95.51 98.08 96.67 98.44 98.17 98.44 96.49 98.97 95.59 96.77 96.15 96.92 100.00 98.81 98.63 100.00 98.61 98.67 94.59 97.30 100.00 93.75 97.56 98.28 98.33 98.59 K intron_retention CG30423 chr2R - chr2R_20763117_20763181 chr2R_20763116_20763117;chr2R_20763181_20763182 chr2R_20762861_20763116;chr2R_20763182_20763182 22.22 15.00 18.18 29.17 NA NA 35.48 10.81 15.00 NA 22.22 20.59 NA 27.78 9.09 15.15 0.00 17.39 16.67 14.00 22.22 33.33 17.86 22.22 24.00 14.29 17.50 7.41 38.89 NA 24.66 26.67 28.57 13.79 20.00 36.84 22.22 NA 31.58 25.00 26.67 24.14 13.33 25.00 36.84 39.29 30.43 36.36 21.62 23.53 22.22 NA 20.00 28.57 20.00 25.00 18.75 22.86 K intron_retention CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042888_5042960 chr2L_5042887_5042888;chr2L_5042960_5042961 chr2L_5042835_5042887;chr2L_5042961_5043016 6.25 NA NA 13.33 NA NA 14.29 14.29 5.00 NA NA 5.88 NA NA 14.29 NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA 6.25 10.00 NA NA NA NA NA 0.00 6.25 9.09 NA NA NA 0.00 NA 12.50 0.00 NA 15.00 NA NA NA NA NA NA 3.70 K alternative_donor RhoGDI chr3L + chr3L_19922009_19923914;chr3L_19921911_19923914 chr3L_19921875_19923914 chr3L_19923915_19924114;chr3L_19921868_19921874 0.00 2.00 0.00 1.11 0.00 2.08 0.00 2.21 1.32 0.00 1.67 0.96 2.44 0.00 1.35 1.61 1.64 2.17 1.30 1.03 0.00 2.33 0.00 0.00 0.00 3.51 0.00 0.00 0.00 0.00 1.56 5.00 11.11 3.54 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 4.76 0.00 2.94 4.76 0.00 0.00 0.00 0.00 3.57 0.00 2.78 0.00 0.00 0.00 K cassette CG16791 chr3R - chr3R_17149949_17163398 chr3R_17149949_17160425;chr3R_17160491_17163398 chr3R_17160426_17160490 chr3R_17149943_17149948;chr3R_17163399_17163498 90.00 88.89 92.86 88.00 92.86 100.00 100.00 100.00 90.91 100.00 92.31 94.44 88.89 83.33 100.00 84.62 87.50 90.00 88.24 100.00 100.00 55.56 100.00 92.86 NA 83.33 90.00 NA 60.00 86.67 85.71 76.92 85.71 95.65 90.00 86.67 85.71 90.91 90.00 84.21 81.82 88.89 87.50 91.67 68.42 94.12 81.82 84.00 88.24 100.00 73.33 NA 100.00 90.00 93.33 NA 83.33 92.00 K intron_retention MB8.chr3R.pasa.66,alpha-Est10,I_chr3R_3314337_3319450 chr3R - chr3R_3313949_3314023 chr3R_3313948_3313949;chr3R_3314023_3314024 chr3R_3313237_3313948;chr3R_3314024_3314336 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 17.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_927771_929704,CG32021,RI_chr4_928180_928245,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_928180_928245 chr4_928179_928180;chr4_928245_928246 chr4_928093_928179;chr4_928246_928314 70.18 66.67 72.73 89.39 73.08 66.67 48.57 84.21 80.56 59.46 79.17 76.39 83.87 81.82 85.42 71.74 73.33 67.86 84.62 75.71 68.97 82.88 73.44 66.00 65.00 84.38 82.80 86.67 78.18 59.62 62.07 72.00 81.67 70.18 67.57 64.15 61.54 61.36 55.17 60.94 65.79 68.66 70.97 59.46 78.12 59.57 67.86 63.93 77.61 62.00 65.00 65.71 70.83 61.90 72.09 60.61 67.74 79.41 N jcn_only_AA CG18854,RI_chr2L_9789598_9789790,I_chr2L_9789694_9789790,REI_chr2L_9789718_9789790,I_chr2L_9790307_9790615,I_chr2L_9790310_9790556 chr2L - chr2L_9789733_9789790;chr2L_9789694_9789790;chr2L_9789718_9789790;chr2L_9789751_9789790;chr2L_9789598_9789790 chr2L_9789740_9789790 chr2L_9789791_9789832;chr2L_9789594_9789597 9.27 9.09 8.02 10.09 6.73 8.70 7.17 10.30 9.27 8.62 14.10 12.61 7.96 8.78 8.67 12.95 6.78 9.57 10.86 9.30 14.29 14.41 8.75 10.78 17.14 12.22 5.06 10.26 9.09 8.91 9.27 11.39 9.52 8.66 7.79 2.08 7.41 15.15 9.17 9.19 11.50 6.91 9.32 13.43 6.02 6.06 11.94 7.30 13.06 6.45 7.27 7.78 9.62 7.41 12.11 13.64 12.28 10.08 K intron_retention CG2225,Ef2b,I_chr2L_21681559_21681619,I_chr2L_21681559_21681621,I_chr2L_21681559_21681649,I_chr2L_21681559_21681721,I_chr2L_21681559_21682037,I_chr2L_21681559_21737600,I_chr2L_21681561_21682041,I_chr2L_21681805_21682038 chr2L - chr2L_21681559_21681721 chr2L_21681558_21681559;chr2L_21681721_21681722 chr2L_21681461_21681558;chr2L_21681722_21681749 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 77.78 55.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention I_chr3L_11555186_11555746,CG7394 chr3L + chr3L_11555838_11555960 chr3L_11555837_11555838;chr3L_11555960_11555961 chr3L_11555837_11555837;chr3L_11555961_11556200 12.31 9.68 8.89 13.56 4.17 5.00 12.31 5.08 7.00 15.38 5.77 9.86 6.45 8.57 3.92 8.70 5.41 5.00 7.41 8.82 9.52 40.00 26.09 17.65 19.05 16.28 27.27 47.37 28.57 16.67 7.41 22.22 NA 3.57 NA 53.85 13.89 16.67 21.88 17.86 NA 5.26 9.68 NA 11.76 22.22 22.73 15.79 8.57 11.76 17.39 17.65 NA NA 6.12 36.84 13.79 15.79 K cassette Zyx102EF,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1080463_1081398;chr4_1080463_1081366 chr4_1080463_1081118;chr4_1081261_1081366,chr4_1081261_1081398 chr4_1081119_1081260 chr4_1080446_1080462;chr4_1081399_1081402 100.00 100.00 100.00 81.82 100.00 100.00 84.00 100.00 96.55 NA 100.00 82.61 100.00 91.67 100.00 100.00 88.89 87.50 90.91 95.83 100.00 90.00 100.00 100.00 100.00 90.00 100.00 100.00 85.71 87.50 100.00 100.00 100.00 95.45 100.00 87.50 100.00 85.71 100.00 100.00 100.00 95.24 90.91 100.00 NA 100.00 90.00 100.00 100.00 90.91 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG34349,I_chr3R_20889373_20889414 chr3R + chr3R_20889839_20889899 chr3R_20889838_20889839;chr3R_20889899_20889900 chr3R_20889657_20889838;chr3R_20889900_20889991 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 3.45 0.00 7.14 0.00 0.00 0.00 NA 3.70 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 9.52 K intron_retention CG31729,I_chr2L_13291292_13292541 chr2L + chr2L_13296746_13297618 chr2L_13296745_13296746;chr2L_13297618_13297619 chr2L_13296222_13296745;chr2L_13297619_13298456 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 2.56 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8107439_8107747 chr2L_8107438_8107439;chr2L_8107747_8107748 chr2L_8107238_8107438;chr2L_8107748_8107847 0.12 0.00 0.00 0.12 0.00 0.00 0.00 0.34 0.08 0.00 0.00 0.00 0.43 0.51 0.38 0.25 0.00 0.00 0.41 0.38 0.00 0.20 0.26 0.51 0.40 0.00 0.52 1.14 0.45 0.00 0.00 0.40 0.00 0.13 0.00 0.41 0.13 0.00 0.12 0.34 0.00 0.20 0.00 0.50 0.00 0.47 0.00 0.67 0.22 0.00 0.25 0.42 0.00 0.00 0.00 0.00 0.00 0.67 K intron_retention CG7627 chr2L - chr2L_8358353_8359414 chr2L_8358352_8358353;chr2L_8359414_8359415 chr2L_8357943_8358352;chr2L_8359415_8359570 100.00 98.28 100.00 98.90 100.00 100.00 99.02 98.88 98.58 100.00 100.00 98.21 100.00 100.00 100.00 98.55 100.00 98.31 98.55 100.00 100.00 99.24 99.06 100.00 100.00 100.00 100.00 98.44 100.00 100.00 98.70 100.00 98.77 99.00 97.96 100.00 100.00 100.00 100.00 100.00 100.00 99.14 100.00 100.00 96.43 100.00 97.50 95.65 99.03 98.25 97.70 98.11 100.00 97.14 100.00 100.00 97.92 100.00 K intron_retention Bap170 chr2R + chr2R_2527008_2527070 chr2R_2527007_2527008;chr2R_2527070_2527071 chr2R_2525686_2527007;chr2R_2527071_2528492 98.00 97.92 100.00 98.33 100.00 97.50 96.00 98.18 96.67 100.00 88.57 100.00 96.30 97.56 97.50 100.00 100.00 97.56 100.00 98.08 100.00 97.50 96.81 100.00 98.04 97.37 98.41 93.94 100.00 97.50 97.50 96.88 97.83 98.31 100.00 100.00 98.85 100.00 98.78 97.70 100.00 98.48 96.43 98.00 97.30 97.56 93.62 97.92 98.55 96.23 100.00 97.44 100.00 95.92 97.87 100.00 98.51 96.30 K jcn_only_AA CG14425,Sxl,CG14425_Sxl,CEF_chrX_6984538_6992033 chrX - chrX_6990969_6991030;chrX_6986156_6991030 chrX_6986204_6991030 chrX_6991031_6991040 11.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG5037 chr2L + chr2L_10331931_10331987 chr2L_10331931_10331971 chr2L_10331854_10331930;chr2L_10331988_10332345 1.92 2.44 0.00 1.92 0.00 0.00 3.12 0.00 1.16 0.00 3.57 4.00 0.00 2.13 0.00 0.00 0.00 5.26 0.00 2.88 5.71 0.00 1.92 2.00 0.00 2.13 2.94 8.70 4.17 0.00 1.61 5.00 0.00 1.92 0.00 9.09 1.72 0.00 1.92 4.92 0.00 2.86 3.45 1.79 5.71 2.70 4.76 0.00 2.44 6.82 0.00 0.00 10.53 0.00 4.65 2.63 0.00 0.00 K alternative_acceptor Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045251_16046129;chr3L_16045251_16046108;chr3L_16045251_16045854;chr3L_16045251_16046111 chr3L_16045251_16046104 chr3L_16045216_16045250;chr3L_16046130_16046204 46.15 48.00 50.00 55.10 41.18 53.85 48.94 47.92 46.97 36.84 42.86 50.00 39.47 53.33 48.65 44.68 41.94 40.00 52.17 42.62 45.45 43.48 45.95 42.86 38.89 61.29 46.43 29.63 50.00 47.62 47.22 50.00 46.38 56.36 53.12 34.78 40.91 47.37 33.33 46.15 45.83 52.63 48.15 48.15 42.86 44.44 50.00 48.48 45.00 41.67 44.83 35.71 50.00 37.50 43.90 46.15 33.33 50.00 K alternative_donor CYLD chr2L - chr2L_10299221_10299761 chr2L_10299221_10299746 chr2L_10299044_10299220;chr2L_10299762_10299827 0.00 NA NA 5.56 NA NA 2.94 0.00 3.23 NA NA 0.00 NA 10.53 NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA N jcn_only_AD blow,RI_chr2R_3470434_3470776 chr2R - chr2R_3472863_3474487 chr2R_3472863_3474436 chr2R_3472561_3472862;chr2R_3474488_3474581 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 73.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Nop60B,I_chr2R_20063248_20063949,snoRNA:Psi18S-1820,F_chr2R_20073291_20073744 chr2R + chr2R_20063715_20063949 chr2R_20063714_20063715;chr2R_20063949_20063950 chr2R_20063615_20063714;chr2R_20063950_20064049 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.48 0.44 0.43 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.18 0.00 0.00 0.19 0.42 0.00 0.45 1.29 2.33 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.35 0.00 0.33 1.01 0.00 0.00 0.46 0.77 0.00 0.00 0.00 0.00 0.35 0.43 0.62 0.36 0.00 0.00 0.57 0.72 0.62 0.00 K multi_cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,RI_chr3R_27801288_27801517,I_chr3R_27801288_27801596 chr3R - chr3R_27784850_27805244 chr3R_27784850_27795477;chr3R_27795508_27801169;chr3R_27801288_27801517;chr3R_27801688_27805244 chr3R_27795478_27795507;chr3R_27801170_27801287;chr3R_27801518_27801687 chr3R_27784757_27784849;chr3R_27805245_27805341 60.00 66.67 75.00 88.89 NA 40.00 NA 50.00 55.56 NA 75.00 81.82 NA 50.00 60.00 55.56 NA 50.00 50.00 62.50 60.00 NA NA NA NA 50.00 25.00 NA NA NA 75.00 NA NA 71.43 NA NA NA NA NA 60.00 NA 50.00 66.67 NA NA NA NA 60.00 55.56 NA 66.67 NA NA NA 50.00 NA NA 66.67 K intron_retention CG31689,I_chr2L_2730373_2736310,I_chr2L_2736431_2737036 chr2L + chr2L_2737901_2738074 chr2L_2737900_2737901;chr2L_2738074_2738075 chr2L_2737662_2737900;chr2L_2738075_2738382 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.07 0.00 2.15 0.00 2.61 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA I_chr2R_7778750_7781059,I_chr2R_7778971_7781059,Ef1alpha48D,I_chr2R_7779690_7780997,I_chr2R_7779690_7781065,I_chr2R_7779690_7783075,I_chr2R_7779719_7781059,I_chr2R_7779813_7781059,I_chr2R_7779892_7781059,EF_chr2R_7779896_7781065,I_chr2R_7780542_7781059,I_chr2R_7780580_7781059,snoRNA:Me28S-A1322,I_chr2R_7780840_7781059,I_chr2R_7780877_7781059,RI_chr2R_7781135_7783075 chr2R + chr2R_7779690_7781065 chr2R_7779690_7781059 chr2R_7779622_7779689;chr2R_7781066_7781097 99.98 99.97 99.99 99.97 99.98 99.98 99.98 99.98 99.98 100.00 99.98 99.98 99.97 99.97 99.98 99.97 99.99 99.95 99.92 99.99 99.99 100.00 99.99 99.99 99.96 99.96 99.97 99.99 99.99 100.00 99.96 99.98 99.99 99.97 99.97 99.96 99.97 99.98 99.98 99.98 100.00 99.98 100.00 99.99 99.98 99.99 99.98 100.00 99.97 100.00 99.97 99.97 99.97 99.96 99.99 99.96 99.98 99.96 K alternative_acceptor baf,I_chr2L_8029734_8029787 chr2L + chr2L_8029734_8029815 chr2L_8029734_8029787 chr2L_8029634_8029733;chr2L_8029816_8029887 0.00 0.00 0.00 0.15 0.00 0.26 0.00 0.30 0.10 0.00 0.00 0.14 0.00 0.00 0.00 0.19 0.28 0.00 0.44 0.00 0.00 0.31 0.00 0.00 0.00 0.42 0.31 0.19 0.00 0.00 0.45 0.00 0.12 0.16 0.00 0.00 0.13 0.00 0.00 0.10 0.30 0.11 0.00 0.15 0.00 0.12 0.00 0.16 0.25 0.00 0.00 0.22 0.00 0.00 0.39 0.30 0.00 0.00 K alternative_donor tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_560576_560886;chr3R_560576_560847 chr3R_560576_560883 chr3R_560204_560575;chr3R_560887_561068 34.59 35.29 24.24 35.48 36.14 33.86 35.71 33.62 35.04 34.78 14.29 34.74 22.43 19.09 34.06 33.98 24.75 35.51 34.93 34.55 32.69 24.73 35.39 35.53 35.23 35.14 34.63 35.11 24.27 34.38 34.66 35.16 35.24 24.09 34.02 NA 35.94 25.00 45.33 23.91 24.37 34.40 23.58 24.62 34.38 24.14 35.48 33.88 23.67 35.71 35.11 35.00 35.11 24.47 34.71 35.71 34.76 10.22 K alternative_acceptor RI_chr3L_201061_201173,NitFhit,I_chr3L_212783_212843 chr3L + chr3L_203791_203872 chr3L_203791_203843 chr3L_203699_203790;chr3L_203873_205311 100.00 96.15 100.00 97.56 100.00 100.00 96.67 97.50 97.56 100.00 95.24 97.92 100.00 100.00 97.22 96.55 100.00 100.00 100.00 98.41 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 96.30 100.00 98.00 95.35 100.00 100.00 95.45 100.00 100.00 97.30 96.15 97.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 92.86 K jcn_only_AD RpL27A,E_chr2L_4457411_4457977,I_chr2L_4458058_4458120 chr2L - chr2L_4458058_4458274;chr2L_4458058_4458140;chr2L_4458058_4458162 chr2L_4458058_4458288 chr2L_4457978_4458057;chr2L_4458289_4458357 79.55 76.84 96.01 97.70 95.42 94.79 89.06 98.22 92.13 74.24 94.67 90.11 93.88 80.37 97.01 92.97 96.56 89.91 97.33 94.20 94.67 81.27 53.23 62.65 64.93 94.22 53.93 64.00 44.98 56.58 70.12 85.27 79.55 96.77 56.52 49.23 58.90 53.65 55.02 55.66 62.94 96.44 96.06 58.41 88.74 64.29 61.37 68.62 91.44 65.53 48.85 74.71 72.28 34.88 96.65 53.29 78.34 80.46 K intron_retention CG3714,I_chr2L_4190825_4191774,I_chr2L_4192969_4193324,I_chr2L_4195905_4196470,I_chr2L_4196780_4197306,RI_chr2L_4196780_4197951,I_chr2L_4196815_4197306,I_chr2L_4196815_4197951 chr2L - chr2L_4196815_4197146 chr2L_4196814_4196815;chr2L_4197146_4197147 chr2L_4196715_4196814;chr2L_4197147_4197191 43.42 NA NA NA NA NA 41.38 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 45.45 NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG9008 chr2L - chr2L_13775048_13775254 chr2L_13775186_13775254 chr2L_13775255_13775406;chr2L_13774837_13775047 5.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 9.09 NA 3.57 NA 6.90 NA 5.00 NA NA NA NA NA NA NA K jcn_only_AA CycD,I_chrX_15803256_15803313 chrX - chrX_15801825_15801891 chrX_15801833_15801891 chrX_15801892_15801960;chrX_15801764_15801824 100.00 100.00 100.00 98.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.80 100.00 100.00 100.00 96.97 98.89 100.00 100.00 100.00 100.00 100.00 98.21 100.00 100.00 97.67 100.00 99.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.02 100.00 100.00 100.00 100.00 100.00 98.85 100.00 99.47 K intron_retention Past1,I_chr3R_8529216_8529360 chr3R + chr3R_8529535_8529597 chr3R_8529534_8529535;chr3R_8529597_8529598 chr3R_8529361_8529534;chr3R_8529598_8529855 0.00 0.00 0.00 0.32 0.00 0.00 0.18 0.31 0.47 0.00 0.00 0.00 0.31 0.27 0.00 0.00 0.00 0.00 0.53 0.10 0.00 0.58 0.32 0.18 0.00 0.00 1.46 0.91 0.41 0.00 0.25 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.11 0.20 0.44 0.00 0.00 0.16 0.00 0.38 0.33 0.37 0.24 0.19 0.00 0.00 0.26 0.00 0.00 0.17 0.00 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2814894;chr2R_2815654_2816013;chr2R_2816342_2816577;chr2R_2816779_2817327;chr2R_2817604_2817753 chr2R_2814895_2815653;chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817328_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Df31,RE_chr2L_21628206_21629662,I_chr2L_21628206_21629666,I_chr2L_21628210_21628515,I_chr2L_21628210_21628944,I_chr2L_21628210_21629216,EI_chr2L_21628210_21629715,REI_chr2L_21628210_21629884,I_chr2L_21628224_21629666,I_chr2L_21628734_21629666 chr2L - chr2L_21628210_21629666;chr2L_21628210_21628515;chr2L_21628210_21628944;chr2L_21628210_21629715;chr2L_21628210_21629884 chr2L_21628210_21629216 chr2L_21628124_21628209;chr2L_21629885_21629918 0.10 0.00 0.14 0.18 0.00 0.09 0.11 0.10 0.05 0.00 0.00 0.26 0.20 0.00 0.06 0.10 0.15 0.16 0.13 0.26 0.16 0.47 0.05 0.19 0.00 0.16 0.09 0.00 0.00 0.00 0.15 0.16 0.27 0.08 0.00 0.00 0.12 0.22 0.18 0.40 0.24 0.16 0.25 0.07 0.26 0.05 0.06 0.12 0.07 0.14 0.07 0.07 0.00 0.20 0.06 0.42 0.08 0.04 K jcn_only_AA CG12004 chr3L + chr3L_1573765_1574987 chr3L_1573765_1573993 chr3L_1573680_1573764;chr3L_1574988_1576330 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.32 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.69 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N alternative_acceptor CG40467 chr3LHet - chr3LHet_722704_789080;chr3LHet_787974_789080 chr3LHet_787757_789080 chr3LHet_789081_789255;chr3LHet_722418_722703 100.00 NA NA 100.00 NA 0.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA Lasp,I_chr3L_16671761_16673911,R_chr3L_16672970_16673911,RI_chr3L_16674471_16704042 chr3L - chr3L_16672970_16673911;chr3L_16672574_16673911 chr3L_16673033_16673911 chr3L_16673912_16674011;chr3L_16671908_16672573 95.46 95.44 95.68 87.82 98.12 95.45 92.58 95.90 95.73 97.03 91.00 91.88 100.00 96.57 96.52 95.08 98.21 92.57 98.62 95.46 91.35 87.94 95.02 97.06 96.02 95.20 96.12 96.03 90.69 94.96 96.43 97.07 95.76 95.24 95.29 99.01 94.91 94.59 96.93 94.91 94.78 95.99 97.13 96.14 87.42 97.58 93.66 96.05 96.22 95.33 95.42 94.90 97.53 94.44 95.21 97.04 92.42 97.34 K alternative_acceptor I_chr2R_13433672_13433749,MESR4 chr2R + chr2R_13438897_13438954 chr2R_13438897_13438948 chr2R_13438630_13438896;chr2R_13438955_13443644 91.67 100.00 81.82 93.75 100.00 87.50 78.57 100.00 88.24 NA NA 94.74 90.91 NA 90.00 77.78 91.67 91.67 92.31 100.00 88.89 100.00 76.92 87.50 100.00 87.50 91.67 NA NA 100.00 NA NA 100.00 94.74 NA 87.50 90.91 NA 88.89 100.00 NA 94.44 88.89 100.00 NA 100.00 NA 90.00 94.12 87.50 91.67 NA NA NA 90.91 NA NA 100.00 K intron_retention CG1161 chr3R + chr3R_1180976_1181048 chr3R_1180975_1180976;chr3R_1181048_1181049 chr3R_1180826_1180975;chr3R_1181049_1181272 0.00 0.00 1.13 0.00 1.00 0.00 1.43 1.66 0.00 0.00 0.00 0.56 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 1.47 1.17 0.00 0.00 5.26 6.45 1.45 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 1.48 1.14 0.77 1.51 0.65 1.45 0.00 0.00 0.95 0.00 0.57 0.29 1.48 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.52 K intron_retention Dcp2,F_chr3L_15815909_15816023,F_chr3L_15817090_15817547 chr3L - chr3L_15817090_15819385 chr3L_15817089_15817090;chr3L_15819385_15819386 chr3L_15816990_15817089;chr3L_15819386_15819487 76.16 88.89 86.96 51.52 50.00 71.43 75.86 75.68 83.33 NA 54.55 64.15 68.18 69.57 88.89 80.85 85.71 76.92 94.74 63.83 64.29 44.00 76.47 NA NA 59.09 83.33 NA 92.31 70.00 70.97 NA 71.43 84.21 91.67 73.68 70.00 NA NA 83.33 NA 68.97 63.16 92.31 NA 100.00 NA 80.00 81.08 NA 76.92 NA NA NA 80.95 NA NA NA K intron_retention Taf12,RI_chr3R_7504595_7505288,I_chr3R_7504949_7505288 chr3R - chr3R_7504907_7505288 chr3R_7504906_7504907;chr3R_7505288_7505289 chr3R_7504849_7504906;chr3R_7505289_7505388 72.22 60.87 63.16 66.13 55.17 59.09 88.89 80.00 72.29 61.54 79.41 88.52 85.71 83.33 60.00 67.92 83.33 71.43 77.14 75.31 69.70 89.47 66.67 72.55 72.22 74.29 73.02 85.00 82.14 72.92 70.00 71.15 75.86 66.10 71.79 81.25 55.71 75.00 70.31 61.18 90.48 74.68 78.95 66.10 82.26 68.82 68.09 67.86 72.22 86.15 62.12 57.45 61.11 81.63 75.61 60.56 68.75 55.77 K alternative_acceptor 14-3-3zeta,I_chr2R_5987356_5991764,I_chr2R_5987603_5991760,I_chr2R_5988662_5991760,I_chr2R_5988666_5991760,I_chr2R_5988919_5991760,I_chr2R_5988931_5991760,I_chr2R_5990647_5991760,I_chr2R_5991249_5991760,I_chr2R_5991689_5991760,I_chr2R_5993610_5993957,I_chr2R_5993331_5994971 chr2R + chr2R_5987356_5991764 chr2R_5987356_5991760 chr2R_5987330_5987355;chr2R_5991765_5991860 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.48 100.00 100.00 100.00 99.57 100.00 100.00 100.00 100.00 100.00 98.21 100.00 100.00 98.81 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.26 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG6236 chr3R - chr3R_11153785_11153849;chr3R_11153785_11153876 chr3R_11153785_11153869 chr3R_11153649_11153784;chr3R_11153877_11153988 3.48 2.38 5.26 2.13 0.00 4.76 5.26 1.67 5.81 2.86 0.00 1.54 8.33 6.25 0.00 2.08 NA 0.00 0.00 5.00 0.00 3.45 3.33 2.04 4.00 10.00 4.48 5.41 4.44 2.99 5.00 3.17 4.88 3.51 5.13 2.78 5.66 6.25 1.85 1.79 3.77 1.43 7.69 2.33 4.00 2.82 2.44 3.57 3.12 4.26 4.92 3.57 5.00 3.45 0.00 4.08 0.00 7.61 K intron_retention CG9669,RI_chr3L_16837963_16838041,RI_chr3L_16837988_16838041 chr3L - chr3L_16837963_16838041 chr3L_16837962_16837963;chr3L_16838041_16838042 chr3L_16837888_16837962;chr3L_16838042_16838062 16.03 NA NA NA NA NA NA NA 11.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA 16.67 NA NA NA 36.36 NA 20.00 25.00 NA NA NA NA NA NA NA 0.00 15.38 K jcn_only_AD CG31038,I_chr3R_25702915_25703648,I_chr3R_25705533_25722419,I_chr3R_25727788_25727905 chr3R + chr3R_25702915_25703648;chr3R_25702989_25703648;chr3R_25702897_25703648;chr3R_25702901_25703648;chr3R_25702838_25703648;chr3R_25702970_25703648 chr3R_25702895_25703648 chr3R_25703649_25703748;chr3R_25702831_25702837 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention CG30118,I_chr2R_14320281_14325712,I_chr2R_14325118_14325712 chr2R - chr2R_14318391_14318677 chr2R_14318390_14318391;chr2R_14318677_14318678 chr2R_14317820_14318390;chr2R_14318678_14318862 17.82 14.29 21.43 44.12 11.54 27.27 35.48 11.11 18.18 NA 21.43 12.50 0.00 13.04 12.50 16.00 22.22 15.15 16.22 17.65 11.11 46.51 18.87 15.09 22.58 28.57 12.50 15.56 33.33 12.50 17.78 23.53 22.58 22.22 17.86 47.37 8.70 7.89 24.39 20.00 38.89 20.37 24.14 10.00 29.17 15.56 15.79 34.62 13.11 15.62 13.95 12.00 19.51 21.05 23.33 14.00 12.90 26.67 K intron_retention CG32529 chrX + chrX_19798252_19798318 chrX_19798251_19798252;chrX_19798318_19798319 chrX_19795901_19798251;chrX_19798319_19798478 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.22 0.41 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.38 0.37 0.32 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.17 0.00 0.21 0.00 0.00 0.00 0.22 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention lsn,Cby,CG31431 chr3R + chr3R_17691470_17691536 chr3R_17691469_17691470;chr3R_17691536_17691537 chr3R_17690992_17691469;chr3R_17691537_17691683 0.00 0.00 0.00 4.88 0.00 0.00 2.00 0.00 3.70 0.00 7.41 0.00 0.00 0.00 0.00 4.00 0.00 3.45 0.00 2.67 0.00 9.09 2.17 0.00 4.76 0.00 4.08 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 1.32 1.56 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette qtc chr2L + chr2L_5068395_5070096 chr2L_5068395_5069126;chr2L_5069220_5070096 chr2L_5069127_5069219 chr2L_5068296_5068394;chr2L_5070097_5070299 14.29 NA 13.33 NA NA NA NA NA 14.29 NA NA 11.11 NA 18.18 NA 6.67 NA NA NA 21.43 NA NA NA NA NA NA NA NA NA NA NA NA 6.67 15.38 NA NA NA NA NA 12.50 NA 14.29 NA NA NA NA 6.67 11.76 14.29 NA 0.00 NA NA NA 25.00 NA 15.79 15.38 K intron_retention CG1516,cbx,I_chr2R_5752557_5752628,RI_chr2R_5752988_5757801 chr2R - chr2R_5752733_5752794 chr2R_5752732_5752733;chr2R_5752794_5752795 chr2R_5752629_5752732;chr2R_5752795_5752859 6.67 NA NA 8.33 NA 15.38 4.76 16.00 9.52 NA NA 6.67 NA 0.00 NA 0.00 NA NA 22.22 5.88 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 4.17 NA NA NA NA NA NA NA 5.71 NA NA NA 11.76 NA NA 13.79 NA 6.67 NA NA NA 0.00 NA NA 13.33 K alternative_donor CG2017 chr3R - chr3R_1686127_1687468;chr3R_1686127_1688092;chr3R_1686127_1687510 chr3R_1686127_1687891 chr3R_1685454_1686126;chr3R_1688093_1688097 60.98 58.97 60.87 50.00 62.16 47.06 61.96 52.54 61.80 68.42 48.78 60.49 59.46 61.54 54.76 51.02 56.25 53.49 54.17 62.11 50.00 61.18 65.00 65.62 64.00 60.78 62.03 72.50 55.70 66.13 59.55 68.42 60.66 57.14 54.76 64.15 74.39 62.90 65.67 63.75 62.50 60.98 53.12 60.00 61.70 57.63 63.04 50.00 54.29 53.45 59.38 71.70 63.16 65.22 63.27 72.73 77.14 60.71 K cassette CG32809,I_chrX_1576304_1577129,I_chrX_1576463_1577129,I_chrX_1576815_1577129,I_chrX_1577031_1577129,CEI_chrX_1579569_1579679,RI_chrX_1585391_1586471,I_chrX_1589508_1589564 chrX - chrX_1576815_1577129 chrX_1576815_1576895;chrX_1577031_1577129 chrX_1576896_1577030 chrX_1576803_1576814;chrX_1577130_1577229 87.50 NA NA NA NA NA 100.00 87.50 92.31 83.33 100.00 92.31 NA 100.00 NA NA 83.33 NA NA 90.91 NA 85.71 NA 100.00 NA 85.71 NA NA NA 80.00 87.50 NA NA 85.71 80.00 NA NA NA NA 80.00 NA 100.00 NA 85.71 NA NA NA 85.71 90.91 NA 100.00 NA NA NA 100.00 NA NA NA K intron_retention RhoGAP15B chrX + chrX_16847302_16847360 chrX_16847301_16847302;chrX_16847360_16847361 chrX_16845018_16847301;chrX_16847361_16847487 0.00 0.00 0.00 2.94 2.70 0.00 0.00 0.00 0.93 2.86 0.00 1.22 0.00 6.67 1.92 4.35 0.00 6.52 3.45 0.00 0.00 2.30 0.00 0.00 0.00 5.88 4.23 6.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.06 0.00 0.00 1.35 0.00 2.33 0.00 2.56 0.00 2.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 5.08 0.00 0.00 0.00 K intron_retention Snx6,RI_chr2L_8218680_8218853,I_chr2L_8230332_8238998 chr2L - chr2L_8218680_8218853 chr2L_8218679_8218680;chr2L_8218853_8218854 chr2L_8218580_8218679;chr2L_8218854_8218871 98.18 97.37 100.00 95.65 92.86 97.14 100.00 97.73 98.25 100.00 100.00 98.57 96.97 100.00 97.56 100.00 95.83 98.33 100.00 97.58 97.56 95.00 100.00 97.14 95.45 96.67 96.15 100.00 97.14 96.43 100.00 98.51 100.00 100.00 97.14 100.00 100.00 100.00 100.00 98.48 98.18 96.25 96.43 100.00 97.14 99.02 97.56 100.00 98.78 94.44 96.88 100.00 97.44 100.00 96.61 98.08 97.96 98.97 K intron_retention PRL-1,I_chr2L_16247385_16247503,I_chr2L_16250028_16250080 chr2L - chr2L_16247187_16247252 chr2L_16247186_16247187;chr2L_16247252_16247253 chr2L_16246288_16247186;chr2L_16247253_16247384 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 K jcn_only_AD scrib,I_chr3R_22362324_22363015,I_chr3R_22381374_22399575,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22362244_22363092;chr3R_22362120_22363092;chr3R_22362254_22363092;chr3R_22362224_22363092;chr3R_22362324_22363092;chr3R_22362142_22363092 chr3R_22362315_22363092 chr3R_22363093_22363115;chr3R_22362112_22362119 2.27 0.00 1.90 1.79 2.50 1.52 5.83 1.23 1.78 0.00 4.88 0.64 5.33 3.37 3.06 0.92 2.27 2.22 3.03 2.65 2.33 0.42 4.03 2.02 1.56 1.25 3.85 2.70 4.32 1.42 2.08 1.35 1.36 3.47 3.82 3.40 4.76 1.49 1.12 2.52 3.03 3.41 3.66 2.94 1.49 1.85 3.85 0.80 3.80 2.08 2.46 1.43 9.30 0.00 0.83 4.08 4.44 1.29 K intron_retention CG18854,I_chr2L_9790307_9790615,I_chr2L_9790310_9790556 chr2L - chr2L_9788371_9788782 chr2L_9788370_9788371;chr2L_9788782_9788783 chr2L_9787352_9788370;chr2L_9788783_9789170 1.44 1.72 1.43 3.28 0.00 0.00 1.20 1.85 1.32 1.89 0.62 1.21 2.38 1.55 0.92 2.57 1.81 0.53 0.75 1.31 0.00 1.03 0.89 1.91 1.32 0.00 0.85 1.26 2.61 1.27 0.29 2.33 1.77 1.47 3.38 1.03 1.48 1.38 0.00 1.81 2.14 1.67 1.00 0.38 1.43 2.94 2.05 3.11 0.96 2.42 2.97 2.09 1.44 1.81 1.10 2.65 2.03 4.97 K intron_retention CG31975,I_chr2L_139688_140767,F_chr2L_139955_140149,CG31974 chr2L - chr2L_139688_139740 chr2L_139687_139688;chr2L_139740_139741 chr2L_139619_139687;chr2L_139741_139809 1.11 NA NA NA NA NA NA NA 5.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 14.29 0.00 NA NA 15.38 NA NA NA NA NA NA NA NA NA 3.70 0.00 20.00 0.00 0.00 NA NA 0.00 9.52 4.35 0.00 0.00 NA NA NA 0.00 0.00 NA NA 7.14 3.85 2.22 N alternative_donor kat80,I_chrX_16162233_16162306,I_chrX_16168725_16169287 chrX - chrX_16168725_16169347;chrX_16168725_16169565 chrX_16168725_16169287 chrX_16168625_16168724;chrX_16169566_16169786 3.81 0.00 3.23 6.00 0.00 3.33 3.77 4.88 5.88 5.56 0.00 5.77 9.68 3.57 6.90 2.13 3.85 0.00 5.71 5.08 0.00 0.00 3.57 2.70 4.00 0.00 2.50 4.35 0.00 3.45 12.31 NA NA 5.17 0.00 0.00 3.45 5.56 5.00 5.26 NA 5.77 5.88 6.45 NA 0.00 4.55 7.69 9.09 6.25 3.12 0.00 0.00 7.14 0.00 4.76 0.00 NA K jcn_only_AD CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2435133_2439498;chr3L_2436229_2439498 chr3L_2439416_2439498 chr3L_2439499_2439583;chr3L_2434626_2435132 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 2.13 1.61 1.79 0.00 0.00 1.52 0.00 1.43 1.33 1.26 0.00 0.00 0.50 0.00 0.77 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.46 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.96 0.00 0.00 1.22 1.22 0.00 0.00 0.96 0.00 0.00 0.00 K jcn_only_AA eIF4G,RI_chr4_945640_945708,I_chr4_945765_946199,I_chr4_948813_950447 chr4 - chr4_941826_945708 chr4_945640_945708 chr4_945709_945763;chr4_939529_941825 2.60 2.88 1.18 2.72 0.00 1.40 1.32 2.61 1.77 3.28 0.62 3.16 4.32 1.42 1.88 1.43 0.50 1.45 0.00 3.45 1.64 3.48 3.72 0.71 0.95 1.32 3.80 5.65 0.00 3.33 1.31 2.94 3.33 1.85 3.23 0.00 1.72 1.19 2.60 3.65 3.39 1.45 1.09 3.83 11.11 6.25 0.00 4.95 1.83 7.23 2.60 6.38 1.23 9.68 3.06 3.85 6.67 5.56 K alternative_acceptor CG1910,I_chr3R_27573809_27574675,I_chr3R_27574408_27574675,I_chr3R_27574557_27574675 chr3R + chr3R_27573809_27574928 chr3R_27573809_27574675 chr3R_27573709_27573808;chr3R_27574929_27575243 0.00 0.00 0.00 0.96 0.00 1.41 0.00 0.00 0.58 0.00 0.00 0.62 1.52 1.59 0.00 1.49 0.00 0.00 1.45 0.92 0.00 1.28 0.67 0.00 0.00 0.00 0.00 0.91 0.00 0.40 0.00 0.00 0.17 0.00 0.66 0.56 0.78 0.00 0.78 0.59 0.00 0.52 0.00 0.00 0.36 0.44 0.00 0.14 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 K intron_retention CG34449,RI_chrX_9232665_9233022,RI_chrX_9249209_9250033,RI_chrX_9249212_9250033,RI_chrX_9249212_9250244 chrX - chrX_9232467_9232545 chrX_9232466_9232467;chrX_9232545_9232546 chrX_9232324_9232466;chrX_9232546_9232664 18.18 24.00 14.29 26.67 25.00 15.38 19.05 18.18 12.12 NA 9.09 18.52 35.71 13.33 6.67 NA 14.29 12.50 10.53 22.22 13.33 25.00 19.35 23.08 22.22 33.33 9.68 40.00 39.13 23.08 5.88 NA 5.71 0.00 17.65 44.44 5.00 29.41 19.35 15.62 NA 13.89 14.29 15.38 25.00 20.00 14.29 35.71 14.29 23.53 26.09 22.22 18.75 NA 15.79 13.33 10.00 NA K intron_retention Pmi,PGRP-LD chr3L + chr3L_5775409_5775770 chr3L_5775408_5775409;chr3L_5775770_5775771 chr3L_5775097_5775408;chr3L_5775771_5775948 64.00 73.68 56.52 52.94 58.06 59.26 67.50 60.00 68.75 78.12 71.43 74.19 64.29 69.57 63.89 75.00 56.00 58.33 62.07 64.44 62.50 61.11 52.17 65.00 73.33 71.43 57.14 63.64 82.35 75.00 48.57 80.00 38.89 55.56 55.56 63.64 68.42 63.64 86.21 77.27 46.15 56.14 54.17 63.16 77.78 77.27 67.74 54.55 52.27 58.33 64.00 71.43 65.38 73.91 62.50 76.47 77.42 66.67 K jcn_only_AD CG9705,I_chr3L_16773492_16773604,I_chr3L_16773517_16773604,I_chr3L_16774043_16774562 chr3L + chr3L_16773521_16773604;chr3L_16773492_16773604 chr3L_16773517_16773604 chr3L_16773605_16773704;chr3L_16773417_16773491 0.00 0.89 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 1.77 0.00 0.98 0.00 0.00 1.25 0.00 1.15 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.79 0.62 0.00 0.00 1.11 0.00 0.00 0.00 1.26 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.47 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 K intron_retention CkIIbeta,I_chrX_11686847_11687475,I_chrX_11687161_11687475,I_chrX_11689220_11690898 chrX + chrX_11687313_11687475 chrX_11687312_11687313;chrX_11687475_11687476 chrX_11687025_11687312;chrX_11687476_11687551 8.93 10.71 6.90 14.63 0.00 0.00 5.71 15.22 8.93 NA 10.53 10.64 5.26 18.18 12.90 7.27 16.67 10.53 3.45 15.15 0.00 3.57 9.09 3.85 NA 0.00 5.88 NA 10.53 0.00 7.69 14.29 7.41 9.30 18.18 10.00 0.00 0.00 13.64 21.05 5.71 9.62 7.69 9.52 0.00 8.11 5.26 12.50 8.93 5.26 14.81 0.00 10.00 11.76 10.26 10.00 5.88 4.08 K cassette Mbs,I_chr3L_16045251_16046108,I_chr3L_16057100_16057329 chr3L + chr3L_16057418_16059122 chr3L_16057418_16058147;chr3L_16058535_16059122 chr3L_16058148_16058534 chr3L_16057330_16057417;chr3L_16059123_16059129 85.25 86.15 83.82 86.58 85.11 71.43 79.38 80.70 87.43 87.18 81.94 90.97 81.71 85.94 88.06 88.89 83.02 85.71 84.71 85.00 76.56 90.12 77.50 79.52 90.00 75.00 80.00 93.62 87.27 89.13 85.71 94.44 91.81 82.81 84.00 89.92 83.80 90.67 84.04 84.44 92.59 81.56 78.85 85.47 83.54 87.10 90.16 90.29 83.58 90.77 81.52 85.25 81.97 81.40 88.46 86.54 80.95 89.71 K jcn_only_AA CG7408 chr3L + chr3L_17872349_17872977;chr3L_17872349_17873076 chr3L_17872349_17873049 chr3L_17872262_17872348;chr3L_17873077_17873164 24.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 24.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD RpL35,I_chrX_5566913_5567030,I_chrX_5567168_5567220 chrX + chrX_5566556_5567030;chrX_5566909_5567030 chrX_5566913_5567030 chrX_5567031_5567130;chrX_5566554_5566555 0.00 0.00 0.00 0.02 0.00 0.00 0.06 0.05 0.02 0.00 0.00 0.00 0.00 0.04 0.06 0.02 0.06 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.03 0.00 0.05 0.00 0.00 0.04 0.00 0.00 0.00 0.04 0.07 0.00 0.00 0.05 0.02 0.05 0.02 0.00 0.06 0.00 0.03 0.03 0.00 0.05 0.04 0.06 0.08 0.04 0.00 0.00 0.03 0.00 0.01 K alternative_acceptor bol,RI_chr3L_9117011_9118271 chr3L - chr3L_9116901_9118271;chr3L_9116877_9118271 chr3L_9117011_9118271 chr3L_9118272_9118272;chr3L_9116716_9116876 75.00 NA NA NA NA NA NA NA 71.43 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA 62.50 NA NA NA NA NA NA NA NA NA K intron_retention Chc,RI_chrX_15728405_15729273,I_chrX_15728405_15729401,I_chrX_15728946_15729357 chrX - chrX_15728405_15729357 chrX_15728404_15728405;chrX_15729357_15729358 chrX_15728305_15728404;chrX_15729358_15729366 8.24 8.24 6.98 8.28 14.29 8.24 7.98 6.09 7.23 21.21 6.35 5.35 7.04 10.00 5.36 7.49 7.14 15.28 7.55 8.46 4.71 9.09 8.33 9.00 10.00 9.09 9.28 5.13 12.24 8.75 4.95 3.45 7.27 8.33 11.34 11.70 8.06 9.30 6.94 14.89 10.34 6.70 7.94 21.10 NA 9.68 8.06 7.89 5.94 18.18 6.48 13.04 8.33 8.00 7.38 5.77 10.42 9.09 K intron_retention CG8176,I_chr3R_5348614_5348964 chr3R + chr3R_5348614_5349257 chr3R_5348613_5348614;chr3R_5349257_5349258 chr3R_5348514_5348613;chr3R_5349258_5349321 7.41 9.68 9.62 7.81 19.05 0.00 11.36 8.57 10.14 16.67 6.25 10.42 19.05 0.00 7.14 6.85 16.13 7.41 5.00 12.20 3.85 0.00 7.27 5.41 37.50 0.00 9.09 13.64 0.00 7.89 3.85 0.00 0.00 4.35 6.90 13.79 14.58 19.05 11.54 19.05 0.00 7.55 3.23 16.67 0.00 5.71 7.41 4.00 4.76 13.33 13.64 4.55 3.45 9.09 4.44 11.76 5.71 4.08 K alternative_acceptor Lnk,RI_chr3R_21714780_21715376 chr3R + chr3R_21716001_21716439 chr3R_21716001_21716424 chr3R_21715377_21716000;chr3R_21716440_21717756 16.67 16.28 12.50 15.56 17.24 12.90 10.00 15.09 19.18 5.88 7.89 15.71 21.05 19.35 17.95 11.90 15.79 22.73 15.00 15.19 13.16 26.32 19.30 22.22 9.38 16.67 19.51 24.14 16.00 14.29 21.82 16.00 10.71 14.04 17.65 14.29 16.67 21.88 20.83 16.95 25.00 19.05 17.39 21.88 4.35 12.50 23.53 15.38 17.19 19.35 11.86 15.38 12.50 21.43 9.30 21.43 25.71 17.14 K jcn_only_AD CG5694,RI_chr2L_10229956_10231366 chr2L - chr2L_10229956_10231282;chr2L_10229956_10231538 chr2L_10229956_10231394 chr2L_10229856_10229955;chr2L_10231539_10231648 3.45 NA NA 0.00 NA NA 9.68 4.76 6.45 NA NA 0.00 7.41 0.00 NA 1.82 NA 4.55 2.86 3.45 NA NA 7.69 4.76 NA NA NA NA NA NA 5.00 NA NA 0.00 NA NA NA NA NA 3.45 NA 3.12 NA NA NA NA NA 10.34 1.89 NA NA NA NA NA NA NA NA NA K intron_retention CG9485,I_chr2R_17217595_17218598,I_chr2R_17228865_17228924 chr2R + chr2R_17201222_17201928 chr2R_17201221_17201222;chr2R_17201928_17201929 chr2R_17200899_17201221;chr2R_17201929_17202269 3.45 3.45 2.38 8.33 0.00 0.00 9.09 2.04 5.88 NA 0.00 8.06 0.00 0.00 3.45 6.25 0.00 0.00 3.85 1.54 0.00 NA 11.11 5.26 NA 10.00 0.00 NA 5.56 13.33 7.41 NA 7.41 4.17 7.69 4.76 6.67 0.00 12.00 6.67 NA 4.17 3.85 0.00 0.00 0.00 NA 2.86 7.27 NA 2.86 0.00 NA NA 0.00 0.00 NA 0.00 K intron_retention CG11790,CG11791 chr3R + chr3R_20876091_20876354 chr3R_20876090_20876091;chr3R_20876354_20876355 chr3R_20876022_20876090;chr3R_20876355_20876441 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 K intron_retention CG14222,e(y)3 chrX - chrX_19516878_19516945 chrX_19516877_19516878;chrX_19516945_19516946 chrX_19516762_19516877;chrX_19516946_19517077 4.00 7.14 2.86 8.20 0.00 2.94 15.91 6.12 4.76 6.67 4.76 7.69 0.00 3.23 3.45 2.27 0.00 0.00 0.00 4.23 0.00 0.00 10.67 4.11 31.03 20.00 12.35 3.77 11.76 0.00 5.63 7.55 2.70 2.27 5.56 17.07 3.51 6.90 4.00 5.15 8.33 7.81 0.00 4.00 6.67 5.10 3.28 3.19 7.46 2.99 6.02 0.00 2.99 1.92 0.00 6.38 2.67 2.05 K alternative_donor Df31,RE_chr2L_21628206_21629662,I_chr2L_21628206_21629666,I_chr2L_21628210_21628515,I_chr2L_21628210_21628944,I_chr2L_21628210_21629216,EI_chr2L_21628210_21629715,REI_chr2L_21628210_21629884,I_chr2L_21628224_21629666,I_chr2L_21628734_21629666 chr2L - chr2L_21628210_21629216;chr2L_21628210_21628515;chr2L_21628210_21628944;chr2L_21628210_21629715;chr2L_21628210_21629884 chr2L_21628210_21629666 chr2L_21628124_21628209;chr2L_21629885_21629918 98.62 98.81 98.81 98.64 97.89 98.55 99.01 98.37 98.85 98.99 99.06 98.05 98.06 98.65 98.48 98.99 98.90 98.67 98.83 98.44 98.62 96.11 98.85 98.90 99.29 98.84 97.71 97.45 95.07 97.89 98.85 97.56 96.37 98.34 98.58 98.78 98.53 99.08 97.93 96.23 97.20 98.33 98.47 98.49 97.69 98.40 98.75 97.02 98.82 98.80 98.75 99.09 99.21 98.68 98.40 98.83 99.36 98.38 K intron_retention CG3511,I_chr2R_20461194_20461274,I_chr2R_20463661_20463716 chr2R + chr2R_20461460_20461518 chr2R_20461459_20461460;chr2R_20461518_20461519 chr2R_20461339_20461459;chr2R_20461519_20461738 0.00 0.00 0.00 7.14 0.00 9.52 2.38 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 NA 0.00 0.00 16.67 0.00 0.00 11.11 3.70 0.00 4.26 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 3.08 K alternative_acceptor I_chr2R_7778750_7781059,I_chr2R_7778971_7781059,Ef1alpha48D,I_chr2R_7779690_7780997,I_chr2R_7779690_7781065,I_chr2R_7779690_7783075,I_chr2R_7779719_7781059,I_chr2R_7779813_7781059,I_chr2R_7779892_7781059,EF_chr2R_7779896_7781065,I_chr2R_7780542_7781059,I_chr2R_7780580_7781059,snoRNA:Me28S-A1322,I_chr2R_7780840_7781059,I_chr2R_7780877_7781059,RI_chr2R_7781135_7783075 chr2R + chr2R_7779892_7781065 chr2R_7779892_7781059 chr2R_7779804_7779891;chr2R_7781066_7781097 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.49 100.00 100.00 100.00 100.00 100.00 97.78 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG9140,I_chr2L_6062436_6062583 chr2L - chr2L_6062436_6062641 chr2L_6062435_6062436;chr2L_6062641_6062642 chr2L_6062336_6062435;chr2L_6062642_6062683 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette chrw,RI_chr2R_19408490_19409650,RI_chr2R_19408490_19410750 chr2R - chr2R_19408490_19410750 chr2R_19408490_19409581;chr2R_19409716_19410750 chr2R_19409582_19409715 chr2R_19408390_19408489;chr2R_19410751_19410850 100.00 100.00 100.00 96.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 97.14 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 96.67 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 K alternative_donor CG1970,I_chr4_590803_590943,I_chr4_590970_591026,I_chr4_590970_591030 chr4 - chr4_590970_591026;chr4_590970_591034 chr4_590970_591030 chr4_590944_590969;chr4_591035_591043 0.36 0.00 0.00 0.45 0.70 0.00 0.00 0.37 0.28 0.60 0.00 0.33 0.75 0.71 0.52 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.44 0.40 0.00 0.00 0.54 0.00 0.90 0.00 1.42 0.60 0.42 0.00 0.00 1.56 0.31 0.43 0.42 0.55 0.00 0.36 0.00 0.35 0.40 0.36 0.55 1.22 0.00 0.65 0.43 0.68 0.00 0.88 0.45 0.00 0.00 0.30 K intron_retention unc-13,I_chr4_897821_902468,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_897821_899476 chr4_897820_897821;chr4_899476_899477 chr4_897721_897820;chr4_899477_899556 0.00 0.00 0.00 17.39 0.00 4.55 21.88 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 3.77 5.26 0.00 5.41 3.77 0.00 4.65 4.76 0.00 5.56 0.00 3.45 9.09 0.00 16.67 1.54 NA 6.25 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.77 0.00 0.00 NA 0.00 NA 3.12 0.00 0.00 8.82 5.26 NA NA 4.17 0.00 NA 0.00 K intron_retention CG30492,C_chr2R_3522706_3523025,RI_chr2R_3536203_3536977,I_chr2R_3543397_3543455 chr2R + chr2R_3538714_3538773 chr2R_3538713_3538714;chr2R_3538773_3538774 chr2R_3538574_3538713;chr2R_3538774_3539292 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA 11.11 NA NA NA NA NA NA NA 9.09 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA 0.00 NA 7.14 NA NA NA NA NA NA NA NA 0.00 K jcn_only_AD Adar,I_chrX_1668256_1682696,I_chrX_1674594_1674717 chrX + chrX_1673292_1674094 chrX_1673403_1674094 chrX_1674095_1674277;chrX_1673123_1673291 94.74 92.50 97.44 84.21 96.30 85.71 97.96 100.00 93.42 NA 93.75 98.11 100.00 90.32 97.22 100.00 94.74 92.59 96.49 95.24 100.00 88.00 90.70 100.00 92.31 97.14 92.86 NA NA 95.00 94.00 NA NA 95.08 91.30 NA 89.47 NA 89.66 73.53 NA 92.68 87.88 100.00 NA 95.00 100.00 NA 92.59 95.83 94.74 100.00 NA NA 87.50 91.67 96.30 NA K jcn_only_AD RpL17,I_chrX_6637182_6638207,RI_chrX_6637182_6637528,I_chrX_6637182_6637973,snoRNA:Psi28S-1232 chrX - chrX_6637182_6638178;chrX_6637182_6638228;chrX_6637182_6638141 chrX_6637182_6637982 chrX_6637093_6637181;chrX_6638229_6638235 3.83 7.92 3.88 12.41 4.32 0.97 4.55 5.34 4.10 1.39 4.81 3.83 4.10 3.33 6.03 4.40 2.56 5.56 2.97 5.74 5.49 1.48 3.26 5.56 4.60 3.01 2.30 1.12 0.96 3.38 3.51 4.02 0.75 2.73 4.90 5.15 3.52 7.50 1.42 1.83 2.05 4.66 8.18 2.20 3.96 2.37 2.33 2.32 4.03 1.94 3.30 5.08 1.02 3.16 7.03 8.21 3.93 0.77 K intron_retention CG13551,I_chr2R_19265696_19270137,I_chr2R_19265701_19270570 chr2R - chr2R_19265701_19270137 chr2R_19265700_19265701;chr2R_19270137_19270138 chr2R_19265601_19265700;chr2R_19270138_19270237 1.39 0.73 1.49 0.41 0.00 0.93 2.22 1.67 1.48 1.12 3.11 1.50 2.82 1.59 1.50 0.94 1.75 0.82 4.02 3.53 1.81 1.19 0.41 0.53 1.94 3.21 1.59 0.84 1.43 1.89 0.73 1.39 1.57 2.29 0.00 0.78 0.58 0.92 0.61 2.03 1.60 1.14 2.23 0.92 0.73 1.63 0.41 2.33 2.07 0.70 1.30 0.72 0.59 0.68 1.56 0.90 0.45 1.54 K intron_retention cryptocephal,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21315539_21318126 chr2L_21315538_21315539;chr2L_21318126_21318127 chr2L_21315533_21315538;chr2L_21318127_21318416 0.00 4.35 0.00 7.81 0.00 0.00 6.56 4.05 3.16 NA 0.00 3.77 0.00 0.00 0.00 2.86 0.00 0.00 3.57 5.88 0.00 0.00 3.92 0.00 3.85 0.00 2.63 2.94 0.00 0.00 3.12 0.00 NA 4.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 2.63 0.00 0.00 4.17 5.71 6.02 0.00 3.39 3.23 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG11486,RE_chr3L_3084894_3085203 chr3L + chr3L_3088120_3088191;chr3L_3088139_3088191;chr3L_3088124_3088191 chr3L_3088129_3088191 chr3L_3088192_3088663;chr3L_3087957_3088119 0.00 0.62 0.70 0.00 0.83 0.00 0.00 0.00 0.32 0.00 0.93 0.00 0.00 0.00 0.72 0.72 0.00 0.00 0.00 0.30 0.00 0.00 0.47 0.00 0.92 0.00 0.65 0.00 0.00 0.00 0.79 0.99 0.00 2.13 0.00 0.75 0.47 0.75 0.00 0.00 0.00 0.85 1.08 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.60 K jcn_only_AA CG7091,RI_chr3R_8805541_8805680,I_chr3R_8809774_8809832 chr3R + chr3R_8805541_8805680 chr3R_8805541_8805676 chr3R_8805441_8805540;chr3R_8805681_8805780 100.00 98.89 100.00 99.36 100.00 100.00 98.48 99.39 97.42 100.00 100.00 99.36 100.00 98.61 98.26 97.18 99.00 100.00 100.00 97.93 98.85 100.00 100.00 100.00 NA 98.68 100.00 100.00 100.00 100.00 95.39 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 98.99 100.00 97.94 100.00 100.00 100.00 100.00 100.00 97.65 96.79 100.00 98.36 100.00 97.96 100.00 99.30 100.00 100.00 97.89 K jcn_only_AA I_chr2L_4834257_4835246,CG15626,I_chr2L_4837691_4837844,I_chr2L_4837780_4837844 chr2L - chr2L_4837640_4837844;chr2L_4837691_4837844 chr2L_4837780_4837844 chr2L_4837845_4837944;chr2L_4837602_4837639 0.00 0.00 0.00 2.94 6.25 0.00 2.70 6.12 2.11 0.00 0.00 0.00 4.08 2.78 2.08 2.22 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.12 0.00 0.00 0.00 0.00 7.14 1.96 0.00 NA 0.00 6.52 3.23 5.13 NA 0.00 3.57 4.44 0.00 3.57 5.00 5.00 0.00 0.00 0.00 0.00 0.00 4.17 2.63 2.78 1.85 0.00 K jcn_only_AD I_chr3L_18664773_18665233,GNBP2,I_chr3L_18667579_18667644 chr3L - chr3L_18668078_18668318;chr3L_18668078_18668478 chr3L_18668078_18668437 chr3L_18667645_18668077;chr3L_18668479_18668494 6.82 4.55 5.56 7.04 6.90 20.00 2.30 5.19 6.73 NA 0.00 16.44 16.13 5.71 0.00 0.00 17.50 14.29 4.76 17.02 6.06 8.00 7.50 3.33 4.35 6.45 2.86 NA NA NA 12.50 8.00 18.18 7.69 NA 15.38 5.00 NA 9.68 2.50 NA 12.33 0.00 19.51 4.55 3.85 20.00 5.71 7.81 0.00 10.71 12.00 NA NA 11.11 12.90 5.00 0.00 K jcn_only_AA I_chrX_1757755_1757801,Pgam5,I_chrX_1793073_1794406,RI_chrX_1795648_1795745 chrX - chrX_1766937_1767005 chrX_1766940_1767005 chrX_1767006_1767583;chrX_1766389_1766936 85.82 84.55 89.16 79.49 88.64 88.41 83.56 86.75 88.29 93.94 85.37 79.28 89.74 77.27 82.02 81.13 86.49 84.00 88.37 86.55 85.71 88.31 84.96 84.05 86.08 87.04 91.67 80.95 80.00 88.10 85.96 90.14 86.72 80.68 83.18 78.26 89.13 85.85 88.19 81.05 84.83 85.71 82.35 80.95 80.92 85.82 85.96 73.08 86.79 82.18 77.78 91.38 85.00 91.80 91.53 90.52 86.34 80.00 K cassette CG4495,I_chr2L_7183323_7183502 chr2L + chr2L_7183323_7183777 chr2L_7183323_7183502;chr2L_7183666_7183777 chr2L_7183503_7183665 chr2L_7183223_7183322;chr2L_7183778_7183815 1.93 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 4.76 NA 8.33 4.76 14.29 NA 0.00 0.00 NA NA NA 7.69 NA NA 3.85 NA NA 0.00 7.69 NA 5.00 5.56 3.85 NA NA NA 5.56 NA 0.00 3.85 6.67 6.67 7.69 0.00 NA 0.00 NA NA 0.00 K intron_retention CG11722,RI_chr3R_5873666_5874292 chr3R - chr3R_5870940_5870992 chr3R_5870939_5870940;chr3R_5870992_5870993 chr3R_5870848_5870939;chr3R_5870993_5871192 0.00 NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA 7.14 0.00 NA NA NA NA NA NA NA NA K multi_cassette l(3)82Fd,I_chr3R_1125296_1161435,I_chr3R_1125296_1175189,I_chr3R_1129905_1148709,I_chr3R_1129905_1160126,I_chr3R_1131576_1133656,I_chr3R_1131693_1133665,EI_chr3R_1136699_1138710,I_chr3R_1140028_1160126,I_chr3R_1147660_1148709 chr3R - chr3R_1129905_1148709 chr3R_1129905_1138710;chr3R_1139220_1139659;chr3R_1140028_1148709 chr3R_1138711_1139219;chr3R_1139660_1140027 chr3R_1129833_1129904;chr3R_1148710_1148745 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD 14-3-3zeta,I_chr2R_5987356_5991764,I_chr2R_5987603_5991760,I_chr2R_5988662_5991760,I_chr2R_5988666_5991760,I_chr2R_5988919_5991760,I_chr2R_5988931_5991760,I_chr2R_5990647_5991760,I_chr2R_5991249_5991760,I_chr2R_5991689_5991760,I_chr2R_5993610_5993957,I_chr2R_5993331_5994971 chr2R + chr2R_5987244_5991760;chr2R_5987237_5991760 chr2R_5987356_5991760 chr2R_5991761_5991860;chr2R_5987235_5987236 62.60 65.74 61.92 58.94 36.16 64.92 65.36 59.08 45.85 79.17 54.12 65.63 52.60 60.20 60.56 58.01 45.40 43.97 62.60 51.28 57.53 60.50 70.78 61.54 68.04 70.24 74.73 76.32 63.55 72.65 61.36 61.79 63.64 62.63 90.79 91.43 34.38 59.56 65.38 68.56 70.83 57.73 58.06 71.32 57.07 79.08 66.36 67.03 62.21 61.79 82.76 54.98 79.07 87.88 61.41 67.23 56.48 69.72 K cassette sd,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15706472_15713628 chrX_15706472_15708058;chrX_15708329_15713628 chrX_15708059_15708328 chrX_15706468_15706471;chrX_15713629_15713756 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.55 100.00 97.92 100.00 99.14 100.00 98.57 98.70 100.00 100.00 100.00 100.00 97.83 100.00 98.59 100.00 100.00 98.59 100.00 100.00 98.57 100.00 100.00 98.53 98.84 100.00 100.00 97.22 100.00 96.55 98.04 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CtBP chr3R + chr3R_8850752_8851110 chr3R_8850767_8851110 chr3R_8851111_8851987;chr3R_8850711_8850751 80.00 84.62 NA NA 63.64 NA 63.64 85.71 68.75 NA 87.50 73.08 NA NA 80.00 100.00 NA NA NA 83.33 NA 80.00 90.91 78.57 80.00 55.56 NA 80.00 50.00 81.25 NA 66.67 54.55 87.50 NA 77.78 93.75 77.78 83.33 88.24 NA 83.33 NA 73.33 90.91 85.71 76.92 NA 76.92 69.57 90.91 NA 80.00 69.23 NA 88.89 84.62 NA K cassette Mlf,noncoding_7111,CEI_chr2R_11826763_11827279 chr2R - chr2R_11824086_11825951;chr2R_11825385_11825951;chr2R_11824089_11825951 chr2R_11825385_11825619,chr2R_11824086_11825619,chr2R_11824089_11825619;chr2R_11825773_11825951 chr2R_11825620_11825772 chr2R_11823989_11824085;chr2R_11825952_11826483 1.68 1.27 0.96 12.03 1.51 1.03 3.83 3.02 1.55 3.70 5.59 3.51 13.67 3.05 2.48 4.00 3.09 1.05 1.61 1.51 3.11 1.05 0.90 1.04 1.60 2.76 1.85 3.27 1.16 1.41 2.13 1.41 1.99 2.33 1.35 0.33 0.82 0.56 0.90 1.88 2.02 1.64 3.03 1.11 2.08 2.03 1.18 1.68 1.62 1.25 1.95 1.69 1.06 1.84 1.88 1.88 1.27 1.52 K intron_retention CG10157,I_chr3R_19504981_19505055 chr3R + chr3R_19504750_19504815 chr3R_19504749_19504750;chr3R_19504815_19504816 chr3R_19504638_19504749;chr3R_19504816_19504980 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 11.54 NA NA NA NA NA NA 13.79 NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 K intron_retention mor chr3R - chr3R_11795317_11795603 chr3R_11795316_11795317;chr3R_11795603_11795604 chr3R_11794297_11795316;chr3R_11795604_11795814 2.10 0.00 0.00 1.27 0.00 0.00 5.56 4.60 3.39 2.38 6.06 2.15 5.77 4.00 0.00 2.50 2.70 0.00 0.00 2.21 4.17 4.08 3.70 1.85 0.00 0.00 5.63 8.16 1.85 2.86 0.00 1.94 1.87 4.00 0.00 1.98 0.00 1.37 3.61 2.10 3.15 2.33 0.00 2.60 2.08 2.21 2.27 2.36 4.76 0.00 0.00 1.59 0.00 0.00 0.00 1.16 2.94 2.22 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2814894;chr2R_2815657_2816013;chr2R_2816342_2816577;chr2R_2816779_2817459;chr2R_2817604_2817753 chr2R_2814895_2815656;chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817460_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 75.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG13890 chr3L + chr3L_851894_851952 chr3L_851893_851894;chr3L_851952_851953 chr3L_851774_851893;chr3L_851953_852693 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.32 15.38 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Nup154,I_chr2L_11009331_11009442,I_chr2L_11011380_11011453 chr2L + chr2L_11009331_11009442 chr2L_11009378_11009442 chr2L_11009443_11009542;chr2L_11009231_11009330 98.54 98.23 95.00 99.37 95.89 100.00 98.63 99.44 99.50 100.00 98.63 96.93 96.97 97.30 98.98 97.20 97.87 96.55 98.00 98.64 98.72 98.98 96.97 99.25 96.91 99.18 98.31 100.00 89.23 99.37 99.01 99.43 99.56 98.40 96.25 100.00 94.32 98.82 99.12 97.89 99.45 98.19 96.51 98.53 98.84 99.65 95.83 98.77 98.54 98.19 99.30 100.00 92.41 93.00 97.79 97.60 97.83 99.34 K intron_retention CG7852,Cct1,Cct2 chr3L + chr3L_1537243_1537523 chr3L_1537242_1537243;chr3L_1537523_1537524 chr3L_1537183_1537242;chr3L_1537524_1537989 6.06 11.11 5.26 21.43 0.00 NA 10.81 3.45 9.80 0.00 NA 11.54 10.00 8.33 0.00 17.65 0.00 0.00 0.00 9.80 0.00 4.44 8.51 2.56 0.00 15.79 16.67 3.77 12.50 6.06 6.90 NA 0.00 2.86 4.35 21.88 6.25 7.69 3.33 8.75 5.00 11.36 NA 9.62 0.00 4.17 NA 2.56 2.78 8.57 9.76 0.00 10.53 NA 10.71 0.00 8.70 0.00 K intron_retention Aldh-III,RE_chr2R_3355332_3355720,I_chr2R_3356541_3356614,RI_chr2R_3357578_3357636,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3354822_3354978 chr2R_3354821_3354822;chr2R_3354978_3354979 chr2R_3354726_3354821;chr2R_3354979_3354987 33.33 25.00 36.36 46.15 38.89 34.62 41.67 21.21 27.12 NA NA 25.49 26.67 22.73 31.03 42.31 21.43 41.18 36.36 38.33 40.00 57.89 35.14 33.33 47.06 46.15 32.43 37.50 36.84 32.00 20.69 33.33 42.11 30.56 26.09 39.47 29.17 26.92 22.03 41.38 53.85 32.65 25.00 22.58 30.77 38.89 33.33 33.33 33.33 36.36 27.78 18.52 18.52 26.83 33.33 23.91 23.91 42.11 K intron_retention CG33558,I_chr2R_2813804_2817753,I_chr2R_2814327_2817753,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2816342_2817753 chr2R_2816341_2816342;chr2R_2817753_2817754 chr2R_2816242_2816341;chr2R_2817754_2817762 23.53 NA NA NA 12.50 16.67 NA NA 33.33 NA NA NA NA NA 41.67 NA NA NA NA 17.65 NA NA 25.00 16.67 NA NA NA NA NA 23.53 NA NA NA NA NA NA 28.00 20.00 35.29 66.67 NA 53.33 NA NA 5.56 13.33 NA 15.00 33.33 36.36 23.08 NA NA NA NA NA NA NA N jcn_only_AD Lag1,RI_chrX_6153758_6153930,I_chrX_6153758_6155077,RI_chrX_6153758_6161036,I_chrX_6160751_6160887,I_chrX_6160907_6161036 chrX - chrX_6153758_6155077;chrX_6153758_6154631;chrX_6153758_6153930;chrX_6153758_6154193;chrX_6153758_6154358;chrX_6153758_6160439 chrX_6153758_6161036 chrX_6153658_6153757;chrX_6161037_6161136 0.32 0.26 0.00 1.14 0.62 0.32 0.00 0.20 0.23 0.37 1.65 0.15 0.34 0.36 0.00 0.92 0.66 0.49 1.39 0.11 0.24 0.66 0.13 0.00 0.30 0.32 0.44 0.82 0.35 0.00 0.25 1.43 0.29 0.53 0.92 0.00 0.13 0.43 0.15 0.76 0.47 0.81 0.68 0.00 0.33 0.00 0.21 0.36 0.33 0.64 0.15 0.00 0.00 1.19 0.00 0.90 0.00 0.00 K alternative_acceptor CG4658,I_chr2L_9958819_9958939 chr2L + chr2L_9957330_9957428 chr2L_9957330_9957402 chr2L_9957318_9957329;chr2L_9957429_9957807 41.67 50.00 37.50 46.67 NA 44.44 64.71 39.29 58.62 NA 36.36 50.00 NA 41.67 35.00 30.00 55.56 50.00 37.50 43.75 30.00 NA NA 75.00 NA 37.50 NA NA NA NA 43.75 NA NA 39.13 NA NA 80.00 NA NA 31.82 NA 37.04 40.00 NA NA NA NA NA 41.67 NA NA NA NA NA 42.11 NA NA NA K jcn_only_AD CG17490 chr2L + chr2L_22431120_22432684;chr2L_22431088_22432684;chr2L_22431301_22432684 chr2L_22431020_22432684 chr2L_22432685_22433056;chr2L_22431014_22431019 16.30 NA NA NA NA NA NA 27.59 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 K intron_retention CG10260 chrX + chrX_2519819_2519896 chrX_2519818_2519819;chrX_2519896_2519897 chrX_2519605_2519818;chrX_2519897_2520958 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.14 1.28 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 4.35 0.00 2.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.98 1.15 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG10407,ird5,CG10185 chr3R - chr3R_11870998_11871076 chr3R_11870998_11871064 chr3R_11870943_11870997;chr3R_11871077_11871396 6.25 NA NA NA NA NA 5.00 27.27 4.17 NA NA NA NA NA NA NA NA NA NA NA NA NA 7.50 4.55 NA NA 0.00 NA NA NA NA NA NA 4.76 NA NA NA NA NA NA NA 9.52 NA NA NA 4.76 NA NA 25.00 NA NA NA NA 22.73 NA NA 7.69 NA K alternative_donor E_chr4_592469_594231,Ephrin,I_chr4_595055_597604,RI_chr4_596272_596341 chr4 + chr4_592737_594238;chr4_592646_594238;chr4_592490_594238;chr4_592593_594238;chr4_592469_594238;chr4_592410_594238 chr4_592798_594238 chr4_594239_594331;chr4_592404_592409 0.00 0.00 0.00 4.55 0.00 0.00 13.64 10.53 16.67 NA 0.00 6.25 0.00 12.50 0.00 9.09 14.29 0.00 11.11 7.69 0.00 0.00 0.00 0.00 0.00 16.67 0.00 NA 0.00 0.00 0.00 NA NA 4.55 0.00 0.00 0.00 NA NA 0.00 NA 14.29 0.00 0.00 NA 0.00 NA 50.00 5.26 NA 0.00 0.00 NA NA 0.00 NA NA NA K jcn_only_AD Rcd6,I_chr2R_16518342_16520460,I_chr2R_16518620_16518916,RI_chr2R_16520388_16520855 chr2R - chr2R_16518620_16520294;chr2R_16518620_16520855 chr2R_16518620_16518916 chr2R_16518520_16518619;chr2R_16520856_16520918 12.12 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.12 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG16936,I_chr2R_20660319_20660496 chr2R - chr2R_20654941_20654997 chr2R_20654940_20654941;chr2R_20654997_20654998 chr2R_20654267_20654940;chr2R_20654998_20655100 0.78 1.06 0.00 0.00 0.00 2.73 1.72 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 1.61 0.00 29.41 3.51 0.00 0.00 0.00 3.90 15.00 8.16 0.00 4.35 0.00 1.23 1.57 1.96 0.00 1.03 4.12 1.32 0.58 0.00 1.05 0.00 0.00 1.31 1.43 1.34 1.32 2.17 2.56 0.78 3.17 1.39 1.43 1.56 0.00 0.00 0.65 K intron_retention I_chrX_16495232_16495296,mbt chrX + chrX_16506739_16507570 chrX_16506738_16506739;chrX_16507570_16507571 chrX_16506467_16506738;chrX_16507571_16508883 7.14 2.13 10.26 40.48 2.86 6.06 19.35 10.87 10.14 7.41 44.00 14.81 6.45 8.33 9.09 9.09 0.00 10.53 3.85 5.00 21.05 44.23 5.06 5.80 9.80 9.52 5.45 9.76 10.17 3.57 9.09 2.38 6.67 9.26 3.03 4.55 1.12 8.70 3.03 7.94 8.11 4.48 3.57 6.25 7.32 3.28 7.55 7.55 2.82 8.33 7.14 3.57 0.00 5.88 7.69 0.00 3.77 0.00 K intron_retention CG9172,eIF5,EI_chrX_15885411_15885854 chrX - chrX_15880717_15880770 chrX_15880716_15880717;chrX_15880770_15880771 chrX_15879877_15880716;chrX_15880771_15880778 6.25 8.11 7.50 4.84 5.26 4.17 6.90 3.23 2.38 3.85 4.44 6.90 7.89 6.25 12.20 5.88 6.25 5.88 7.32 6.19 6.25 0.00 9.09 0.00 6.67 12.12 22.22 36.36 21.88 10.53 12.50 14.29 11.54 4.62 9.52 11.76 0.00 5.00 5.88 5.00 11.76 4.00 0.00 0.00 7.27 10.81 6.90 15.38 6.25 0.00 0.00 0.00 0.00 NA 1.67 0.00 4.17 13.11 K jcn_only_AA Sin3A,RI_chr2R_8469457_8469793,I_chr2R_8473578_8480185,RI_chr2R_8479951_8480233 chr2R - chr2R_8469445_8469793 chr2R_8469457_8469793 chr2R_8469794_8469893;chr2R_8469357_8469444 27.87 26.73 25.00 28.00 20.00 24.62 16.82 32.43 25.39 39.71 29.03 25.50 20.00 15.94 24.69 33.33 32.50 27.16 23.81 25.77 29.11 35.86 28.21 25.66 34.83 36.05 18.95 16.67 28.72 30.15 24.19 27.87 31.11 30.60 31.39 47.41 26.09 24.07 28.25 31.58 37.50 20.35 34.29 21.13 26.32 32.18 16.13 41.77 27.65 21.80 20.00 26.67 30.61 35.48 29.67 29.20 25.29 28.97 K alternative_donor Atet,chr2L_4334987_4335394.0,chr2L_4335788_4336447.0 chr2L + chr2L_4334440_4336449;chr2L_4334111_4336449;chr2L_4334031_4336449 chr2L_4334105_4336449 chr2L_4336450_4336957;chr2L_4333936_4334030 25.00 26.32 27.59 14.89 30.77 16.00 10.34 17.07 17.02 33.33 20.00 20.41 14.29 20.69 34.29 25.00 11.11 27.27 18.18 11.11 11.76 50.00 34.48 27.59 39.13 21.43 38.30 36.67 26.23 19.44 26.92 26.67 34.21 19.51 30.00 29.41 21.05 41.18 37.50 14.04 34.15 24.49 19.05 17.95 20.69 32.08 16.00 27.27 24.49 39.13 25.81 31.25 27.27 38.46 14.29 20.00 21.43 23.61 K intron_retention garz,CEI_chr2R_8219604_8219651 chr2R + chr2R_8219604_8219977 chr2R_8219603_8219604;chr2R_8219977_8219978 chr2R_8219504_8219603;chr2R_8219978_8220231 0.00 0.00 2.13 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 2.56 4.88 1.82 1.12 3.03 3.57 0.00 0.00 0.00 0.00 5.56 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 1.92 0.00 1.28 0.00 K intron_retention CG14196 chrX - chrX_19132507_19135345 chrX_19132506_19132507;chrX_19135345_19135346 chrX_19132470_19132506;chrX_19135346_19135981 0.00 NA NA NA NA NA 6.67 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA 2.15 0.00 0.00 0.00 0.00 4.00 3.45 0.00 0.00 0.00 NA 4.35 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA NA 0.00 3.85 NA K multi_cassette AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9003790_9007675 chrX_9003790_9004854;chrX_9005039_9005114;chrX_9005177_9005419;chrX_9005562_9005630;chrX_9005820_9005886;chrX_9006126_9006195;chrX_9006273_9006782;chrX_9006801_9007675 chrX_9004855_9005038;chrX_9005115_9005176;chrX_9005420_9005561;chrX_9005631_9005819;chrX_9005887_9006125;chrX_9006196_9006272;chrX_9006783_9006800 chrX_9003721_9003789;chrX_9007676_9007775 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 95.24 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention sd,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15714587_15717219 chrX_15714586_15714587;chrX_15717219_15717220 chrX_15714456_15714586;chrX_15717220_15717260 0.00 0.00 0.00 8.11 0.00 0.00 5.56 0.00 7.79 0.00 0.00 4.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 1.35 3.70 0.00 0.00 0.99 0.00 0.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 2.27 0.00 5.00 0.00 0.00 3.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor sgg,I_chrX_2528059_2528637,I_chrX_2528131_2535622,RI_chrX_2528212_2535830,I_chrX_2528367_2535622,I_chrX_2528472_2535622,I_chrX_2529065_2563945,I_chrX_2536127_2563666,I_chrX_2563342_2563666,I_chrX_2565856_2566099,I_chrX_2566157_2566946 chrX + chrX_2528288_2535622;chrX_2528212_2535622 chrX_2528059_2535622 chrX_2535623_2535722;chrX_2528052_2528058 63.64 66.67 64.52 59.52 75.00 60.00 56.76 69.35 70.77 NA 50.00 56.67 81.82 58.62 68.18 66.67 46.67 50.00 63.64 66.67 45.45 85.71 68.18 64.29 28.57 70.59 60.00 NA NA 90.91 63.33 42.86 NA 58.70 63.64 55.56 81.82 66.67 60.00 62.50 NA 58.14 75.00 60.00 NA 54.55 64.29 NA 67.86 NA 61.11 75.00 NA NA 68.75 45.45 72.73 NA K alternative_acceptor RI_chrX_6482284_6482336,Pat1,I_chrX_6489999_6490050,APC7 chrX + chrX_6489505_6489571 chrX_6489505_6489568 chrX_6489347_6489504;chrX_6489572_6489993 97.87 100.00 97.06 98.11 96.97 96.88 97.18 98.33 98.70 95.24 96.88 98.28 97.56 96.97 97.78 100.00 96.77 97.73 97.30 100.00 97.37 97.87 100.00 93.55 96.00 97.30 98.00 97.30 100.00 96.97 97.50 100.00 100.00 96.23 96.15 100.00 100.00 100.00 97.50 100.00 100.00 98.61 96.77 100.00 90.32 100.00 100.00 100.00 98.48 100.00 91.49 96.00 100.00 100.00 95.35 100.00 100.00 97.62 K intron_retention Tango1,I_chr2L_6652699_6652752 chr2L + chr2L_6651243_6651272 chr2L_6651242_6651243;chr2L_6651272_6651273 chr2L_6651050_6651242;chr2L_6651273_6651891 100.00 100.00 96.97 98.59 100.00 100.00 100.00 98.36 98.77 100.00 100.00 98.57 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.61 100.00 100.00 100.00 100.00 100.00 97.92 100.00 98.59 100.00 100.00 100.00 100.00 100.00 100.00 96.67 96.77 100.00 100.00 97.78 100.00 100.00 100.00 100.00 100.00 K multi_cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,RI_chr3R_27801288_27801517,I_chr3R_27801288_27801596 chr3R - chr3R_27798276_27805244 chr3R_27798276_27801169;chr3R_27801288_27801517;chr3R_27801688_27805244 chr3R_27801170_27801287;chr3R_27801518_27801687 chr3R_27798224_27798275;chr3R_27805245_27805341 90.00 100.00 100.00 90.00 NA NA NA 87.50 55.56 NA 100.00 100.00 NA 75.00 100.00 100.00 NA 80.00 100.00 83.33 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 75.00 NA 66.67 NA NA NA 100.00 NA 80.00 85.71 NA 75.00 NA NA NA 80.00 NA NA 100.00 K intron_retention larp,I_chr3R_24150390_24150531,F_chr3R_24151542_24153876,RI_chr3R_24160430_24161527 chr3R - chr3R_24151542_24151775 chr3R_24151541_24151542;chr3R_24151775_24151776 chr3R_24151442_24151541;chr3R_24151776_24151825 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 6.67 7.69 12.50 NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 NA NA NA NA NA NA 3.23 NA 0.00 0.00 NA NA NA NA NA NA K intron_retention CG6643,I_chr3R_20370792_20375406 chr3R + chr3R_20378706_20380077 chr3R_20378705_20378706;chr3R_20380077_20380078 chr3R_20378620_20378705;chr3R_20380078_20380126 1.49 5.56 2.60 4.76 0.00 0.00 6.06 1.67 1.39 0.00 4.62 2.29 0.00 0.00 0.00 2.67 0.00 0.00 4.49 1.07 5.00 1.97 0.00 1.49 0.00 0.00 0.00 0.00 0.00 1.96 1.89 0.00 0.00 4.88 1.92 0.00 2.78 1.82 0.00 3.49 1.67 1.38 1.82 2.53 0.00 0.00 1.18 2.00 3.33 4.26 4.17 4.17 0.00 0.00 2.22 0.00 1.01 3.96 K intron_retention eIF5,I_chrX_15882955_15883078,RI_chrX_15883163_15883424,I_chrX_15883297_15883424,EI_chrX_15885411_15885854,RI_chrX_15885416_15885611 chrX - chrX_15883143_15883470 chrX_15883142_15883143;chrX_15883470_15883471 chrX_15883079_15883142;chrX_15883471_15883504 100.00 100.00 96.77 100.00 100.00 96.15 100.00 100.00 98.41 NA 100.00 100.00 100.00 100.00 100.00 98.80 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 95.65 100.00 100.00 94.44 97.56 98.65 100.00 96.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 96.97 100.00 98.95 100.00 100.00 94.44 95.65 100.00 100.00 94.44 100.00 97.96 K intron_retention RpS27,I_chr3R_21072390_21072647,I_chr3R_21072390_21072710,I_chr3R_21072390_21073049 chr3R - chr3R_21072390_21073154 chr3R_21072389_21072390;chr3R_21073154_21073155 chr3R_21072290_21072389;chr3R_21073155_21073223 0.14 0.00 0.25 0.07 0.00 0.12 0.19 0.12 0.09 0.13 0.18 0.19 0.30 0.08 0.08 0.31 0.06 0.00 0.10 0.24 0.21 0.64 0.00 0.00 0.58 0.18 0.26 0.94 0.93 0.62 0.12 0.55 0.60 0.13 0.00 0.43 0.00 0.00 0.00 0.33 0.62 0.10 0.14 0.00 0.21 0.80 0.33 0.46 0.34 0.10 0.00 0.29 0.09 0.00 0.17 0.00 0.14 0.14 K alternative_acceptor WRNexo chr3R - chr3R_14191333_14191393 chr3R_14191336_14191393 chr3R_14191394_14191498;chr3R_14191130_14191332 66.67 66.67 41.67 56.25 NA NA 66.67 68.18 61.11 NA NA 64.29 55.56 50.00 60.00 70.00 54.55 NA 75.00 68.42 NA NA 81.25 66.67 NA NA 60.00 NA NA NA NA NA NA 60.00 NA NA 66.67 NA 66.67 50.00 NA 66.67 70.00 NA NA NA 60.00 66.67 66.67 63.64 58.33 66.67 57.14 54.55 83.33 87.50 55.56 90.00 K alternative_acceptor Idh,I_chr3L_8351006_8351949,I_chr3L_8351036_8351655 chr3L - chr3L_8351006_8351115 chr3L_8351036_8351115 chr3L_8351116_8351172;chr3L_8350936_8351005 60.00 NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2460154_2461145 chr3L_2460153_2460154;chr3L_2461145_2461146 chr3L_2459591_2460153;chr3L_2461146_2461268 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.85 0.00 0.99 1.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Df31,RE_chr2L_21628206_21629662,I_chr2L_21628206_21629666,I_chr2L_21628210_21628515,I_chr2L_21628210_21628944,I_chr2L_21628210_21629216,EI_chr2L_21628210_21629715,REI_chr2L_21628210_21629884,I_chr2L_21628224_21629666 chr2L - chr2L_21628210_21629216;chr2L_21628210_21629666;chr2L_21628210_21628944;chr2L_21628210_21629715;chr2L_21628210_21629884 chr2L_21628210_21628515 chr2L_21628124_21628209;chr2L_21629885_21629918 0.07 0.07 0.07 0.09 0.08 0.17 0.06 0.00 0.00 0.00 0.21 0.17 0.00 0.00 0.00 0.10 0.00 0.16 0.00 0.02 0.00 0.00 0.00 0.19 0.00 0.16 0.27 0.41 0.12 0.00 0.15 0.08 0.18 0.00 0.00 0.10 0.12 0.00 0.18 0.09 0.00 0.04 0.00 0.07 0.05 0.05 0.13 0.18 0.14 0.07 0.07 0.00 0.13 0.00 0.06 0.07 0.00 0.04 N jcn_only_AA Kr-h1,chr2L_6088263_6088504.0 chr2L + chr2L_6083741_6091609;chr2L_6083741_6084867 chr2L_6083741_6092994 chr2L_6083642_6083740 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 18.33 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA 100.00 100.00 100.00 96.30 100.00 100.00 100.00 NA 98.97 100.00 NA NA NA NA NA 100.00 NA NA 100.00 K jcn_only_AA Rfx,I_chr3R_6198928_6200931 chr3R - chr3R_6198232_6198462 chr3R_6198256_6198462 chr3R_6198463_6198898;chr3R_6197871_6198231 14.81 NA NA 17.50 NA NA NA NA 5.00 NA NA 4.55 NA NA NA NA NA NA NA 7.50 NA 11.11 17.39 NA NA NA NA NA 18.18 NA NA NA 17.24 NA NA 33.33 16.00 NA 14.71 14.81 NA 2.50 NA NA NA NA 14.29 14.81 11.11 NA 25.00 NA 18.18 NA 0.00 NA NA NA K intron_retention cib,I_chrX_4000307_4003527 chrX + chrX_4003858_4003929 chrX_4003857_4003858;chrX_4003929_4003930 chrX_4003722_4003857;chrX_4003930_4004043 1.43 1.89 1.03 1.81 0.00 3.85 3.25 2.16 1.43 0.00 0.00 2.58 0.00 1.39 3.75 1.45 3.77 0.00 1.28 1.97 0.00 2.37 1.85 2.12 2.38 0.00 4.73 8.13 10.00 1.61 2.33 2.08 1.29 0.56 0.68 1.12 1.45 0.00 1.72 1.02 1.62 0.00 0.00 0.00 1.73 0.47 0.96 1.05 1.18 0.00 2.99 0.00 2.86 0.00 0.00 1.33 2.88 2.44 K alternative_donor eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20341925_20342041;chr3L_20341636_20342041;chr3L_20341509_20342041;chr3L_20341865_20342041;chr3L_20341486_20342041;chr3L_20341522_20342041;chr3L_20341751_20342041;chr3L_20341530_20342041;chr3L_20341598_20342041;chr3L_20341759_20342041 chr3L_20341629_20342041 chr3L_20342042_20342306;chr3L_20341482_20341485 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG1746,I_chr3R_27044771_27044867,I_chr3R_27044771_27044990,I_chr3R_27044771_27045027,RI_chr3R_27044771_27045110,I_chr3R_27044771_27045132,RI_chr3R_27044771_27045188,I_chr3R_27044771_27045193,RI_chr3R_27044771_27045268 chr3R - chr3R_27044771_27045188;chr3R_27044771_27045257;chr3R_27044771_27045132;chr3R_27044771_27045027;chr3R_27044771_27045110;chr3R_27044771_27044831;chr3R_27044771_27044990;chr3R_27044771_27044895 chr3R_27044771_27044867 chr3R_27044671_27044770;chr3R_27045258_27045273 0.00 0.00 0.17 0.09 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.20 0.13 0.15 0.00 0.09 0.23 0.00 2.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.24 0.00 1.05 0.00 K intron_retention Det,CG5285,CG5292 chr3R + chr3R_12975900_12975960 chr3R_12975899_12975900;chr3R_12975960_12975961 chr3R_12975720_12975899;chr3R_12975961_12976208 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 5.88 16.67 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Atpalpha,I_chr3R_16783890_16785070,I_chr3R_16788018_16789830,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16783890_16784958 chr3R_16783889_16783890;chr3R_16784958_16784959 chr3R_16783790_16783889;chr3R_16784959_16785012 4.80 3.85 0.00 0.00 NA NA 11.11 1.52 4.84 NA NA 4.00 0.00 8.82 8.33 4.35 5.56 NA 6.82 1.92 NA 7.14 0.00 NA NA 0.00 0.00 NA NA NA 12.00 NA NA 8.06 0.00 0.00 14.29 NA NA 4.76 NA 0.00 6.25 9.09 NA 0.00 NA 6.25 8.89 29.41 0.00 13.33 NA NA 6.90 NA NA NA K alternative_acceptor CG8121,RI_chr3R_5183458_5183705 chr3R + chr3R_5160975_5161221 chr3R_5160975_5161218 chr3R_5160915_5160974;chr3R_5161222_5161357 43.75 30.00 NA 60.00 NA NA 50.00 63.64 47.37 NA NA 36.84 NA 50.00 36.36 31.25 NA NA 45.45 41.67 NA NA NA NA NA 60.00 NA NA 36.36 NA 36.36 NA NA 43.75 NA NA NA NA NA 36.84 NA 33.33 NA 38.89 NA 53.33 NA 31.58 50.00 NA NA NA NA NA 46.15 NA NA 53.85 K intron_retention CG12753,Pak3 chr3R - chr3R_12264373_12264433 chr3R_12264372_12264373;chr3R_12264433_12264434 chr3R_12263787_12264372;chr3R_12264434_12264895 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2393243 chrX_2387249_2387583;chrX_2387710_2388436;chrX_2388671_2390808;chrX_2390959_2391350;chrX_2391522_2393243 chrX_2387584_2387709;chrX_2388437_2388670;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2393244_2393291 20.00 NA NA NA NA NA NA 20.00 28.57 NA NA 7.69 NA NA NA NA NA NA 20.00 20.00 NA NA NA NA NA NA NA NA NA NA NA NA 12.50 20.00 NA 4.35 NA NA NA 12.50 NA 20.00 NA 28.57 NA NA NA 28.57 28.57 NA NA NA NA NA 40.00 NA NA NA K jcn_only_AA dwg,RI_chrX_2622297_2622355,RI_chrX_2622297_2622430,RI_chrX_2622435_2622577,RI_chrX_2627170_2627263 chrX + chrX_2622297_2622577;chrX_2622297_2622355 chrX_2622297_2622430 chrX_2622197_2622296;chrX_2622578_2622677 8.59 5.56 6.38 10.87 7.69 4.88 14.81 1.75 4.35 16.22 14.29 2.41 10.00 0.00 6.38 10.91 10.00 10.00 11.11 6.19 6.25 42.11 7.94 9.62 15.91 11.11 14.52 8.16 10.53 3.85 28.57 10.00 9.68 3.77 15.15 30.77 7.35 5.00 8.43 8.75 11.11 6.33 10.00 10.53 5.17 10.26 4.35 7.25 6.41 5.88 9.72 NA 2.00 15.09 2.44 11.32 2.17 2.63 K intron_retention G-ialpha65A,I_chr3L_6967574_6972726 chr3L - chr3L_6967033_6967101 chr3L_6967032_6967033;chr3L_6967101_6967102 chr3L_6966938_6967032;chr3L_6967102_6967573 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.58 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.13 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Rab11,I_chr3R_16937578_16940474,I_chr3R_16937759_16939667,RE_chr3R_16939259_16939667 chr3R + chr3R_16937578_16939667 chr3R_16939259_16939667 chr3R_16939668_16939767;chr3R_16937478_16937577 0.29 0.41 0.51 0.10 0.20 0.59 0.24 0.08 0.43 0.00 1.48 0.89 0.19 0.58 0.83 0.24 0.00 0.18 0.14 0.10 0.43 0.99 0.42 0.39 0.37 0.29 0.00 0.00 0.31 0.00 0.16 0.58 0.13 0.41 0.28 0.30 0.00 0.28 0.00 0.45 0.19 0.09 0.40 0.75 0.22 0.32 0.61 0.21 0.49 0.47 0.78 0.00 0.51 0.00 0.29 0.25 0.41 0.27 K intron_retention cul-2,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21661201_21661347 chr2L_21661200_21661201;chr2L_21661347_21661348 chr2L_21660148_21661200;chr2L_21661348_21661465 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Tom40,I_chrX_7631717_7632414 chrX + chrX_7631717_7632414 chrX_7631717_7631905;chrX_7632169_7632414 chrX_7631906_7632168 chrX_7631617_7631716;chrX_7632415_7632514 100.00 100.00 100.00 99.22 100.00 100.00 100.00 100.00 99.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.05 100.00 100.00 100.00 100.00 100.00 98.84 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.82 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.53 100.00 100.00 100.00 99.06 100.00 100.00 100.00 100.00 N cassette desat1,I_chr3R_8266841_8270520,I_chr3R_8268247_8270520,RI_chr3R_8269415_8270520 chr3R + chr3R_8267331_8270520 chr3R_8267331_8269314;chr3R_8269415_8270520 chr3R_8269315_8269414 chr3R_8267144_8267330;chr3R_8270521_8270620 2.68 0.65 2.99 3.06 4.17 2.69 2.58 1.56 3.68 4.60 5.83 3.67 2.65 1.99 1.90 2.14 2.78 3.24 2.26 4.50 2.82 9.80 2.66 3.65 3.12 2.36 2.27 4.12 2.68 3.92 1.86 2.78 1.84 1.06 3.55 2.14 2.23 0.54 3.32 3.98 0.96 2.94 2.21 0.95 3.57 2.20 2.17 3.33 1.96 2.91 2.79 1.48 1.97 2.16 3.40 1.17 3.57 1.55 K intron_retention CG11266,RI_chr2L_7033019_7034764,I_chr2L_7034274_7035406,RI_chr2L_7034911_7035074,I_chr2L_7051093_7051366 chr2L + chr2L_7035562_7035636 chr2L_7035561_7035562;chr2L_7035636_7035637 chr2L_7035407_7035561;chr2L_7035637_7036035 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 3.88 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention WRNexo chr3R - chr3R_14191702_14191757 chr3R_14191701_14191702;chr3R_14191757_14191758 chr3R_14191633_14191701;chr3R_14191758_14191788 0.00 0.00 0.00 0.00 0.00 5.56 2.44 7.69 0.00 0.00 0.00 4.44 6.90 0.00 3.85 0.00 0.00 0.00 8.00 3.95 0.00 3.57 4.17 0.00 NA 13.33 0.00 NA NA 4.17 6.90 0.00 0.00 0.00 0.00 16.67 0.00 0.00 NA 2.27 11.11 3.12 0.00 3.57 3.45 5.77 1.67 1.52 6.45 0.00 2.63 0.00 0.00 0.00 3.03 0.00 0.00 2.46 K intron_retention Csk,I_chr3R_7463337_7463512,I_chr3R_7468928_7472509 chr3R - chr3R_7460719_7460779 chr3R_7460718_7460719;chr3R_7460779_7460780 chr3R_7460381_7460718;chr3R_7460780_7460866 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N multi_cassette Hr78,I_chr3L_21490089_21490390,CG33214 chr3L - chr3L_21488969_21490390 chr3L_21488969_21489526;chr3L_21489842_21489919;chr3L_21490008_21490390 chr3L_21489527_21489841;chr3L_21489920_21490007 chr3L_21488699_21488968;chr3L_21490391_21490490 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 74.07 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Bet5 chr3R + chr3R_26006177_26006230 chr3R_26006176_26006177;chr3R_26006230_26006231 chr3R_26005962_26006176;chr3R_26006231_26006373 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 5.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 3.70 0.00 0.00 1.67 0.00 0.00 0.00 K intron_retention Pka-R2,I_chr2R_5911755_5913333,I_chr2R_5911755_5913354,I_chr2R_5911803_5913333 chr2R - chr2R_5911708_5913354 chr2R_5911707_5911708;chr2R_5913354_5913355 chr2R_5911703_5911707;chr2R_5913355_5913433 50.00 NA 52.63 66.67 40.00 NA 53.85 46.88 51.35 NA 58.33 60.00 72.73 46.15 60.00 52.00 41.18 70.00 43.75 61.29 46.67 41.67 44.44 23.08 NA 90.00 NA NA NA NA 58.82 NA NA 50.00 54.55 NA 30.77 NA 26.67 40.00 NA 48.48 58.33 22.22 NA 45.45 NA 38.46 60.61 NA 50.00 NA NA NA 44.00 NA NA NA K jcn_only_AA plexA,I_chr4_1035473_1035591,RI_chr4_1036247_1047588,RI_chr4_1040642_1047395,RF_chr4_1044307_1047399 chr4 - chr4_1035473_1035591 chr4_1035535_1035591 chr4_1035592_1035691;chr4_1035404_1035472 100.00 100.00 100.00 98.52 100.00 100.00 99.39 100.00 99.35 NA 100.00 98.73 100.00 98.70 100.00 99.35 95.38 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.86 100.00 96.88 100.00 98.25 100.00 100.00 98.10 100.00 97.37 93.55 100.00 100.00 96.97 100.00 98.57 98.86 100.00 NA 100.00 100.00 100.00 99.44 98.33 100.00 97.37 100.00 100.00 97.73 97.62 98.25 100.00 K intron_retention CG14290,RI_chr3R_14754008_14754110 chr3R - chr3R_14754037_14754110 chr3R_14754036_14754037;chr3R_14754110_14754111 chr3R_14753942_14754036;chr3R_14754111_14754179 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 K jcn_only_AA None chrU + chrU_1184302_1184359 chrU_1184302_1184352 99.69 99.33 99.44 100.00 99.14 99.30 99.65 100.00 99.30 100.00 100.00 99.70 98.88 99.40 99.47 99.69 99.38 100.00 100.00 99.12 100.00 100.00 100.00 99.42 100.00 99.17 100.00 100.00 100.00 98.21 99.63 99.21 99.05 100.00 99.21 99.14 100.00 97.85 100.00 100.00 100.00 99.68 99.42 100.00 100.00 99.17 100.00 99.25 100.00 99.22 100.00 100.00 100.00 100.00 99.13 99.40 99.57 100.00 K alternative_donor CG6006 chr3R + chr3R_11983962_11984579;chr3R_11984036_11984579;chr3R_11984029_11984579;chr3R_11984018_11984579 chr3R_11984096_11984579 chr3R_11984580_11984637;chr3R_11983945_11983961 12.50 12.50 6.25 10.00 NA 10.00 8.33 23.08 19.05 NA 0.00 13.04 12.50 16.67 13.33 7.69 22.22 7.69 27.27 9.09 14.29 14.29 9.52 12.50 11.11 22.22 11.76 20.00 25.00 0.00 16.67 0.00 25.00 15.79 12.50 12.50 14.29 9.09 13.33 15.79 0.00 17.39 16.67 10.00 NA 8.33 11.11 10.00 13.79 0.00 11.11 16.67 14.29 20.00 7.69 12.50 0.00 0.00 K intron_retention CG6654,I_chr3R_11042070_11042139 chr3R - chr3R_11039123_11039187 chr3R_11039122_11039123;chr3R_11039187_11039188 chr3R_11037985_11039122;chr3R_11039188_11039424 0.00 NA NA NA NA NA NA NA 11.76 NA NA 7.69 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA NA 0.00 0.00 NA 7.69 NA NA NA NA NA NA 4.76 NA NA 0.00 7.14 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 K alternative_acceptor par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,EF_chr2R_15349994_15351814,F_chr2R_15349994_15351846,noncoding_8037,FI_chr2R_15350149_15351814,I_chr2R_15350437_15351814,I_chr2R_15350437_15351825,I_chr2R_15350905_15351814,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15350437_15351846 chr2R_15350437_15351814 chr2R_15350337_15350436;chr2R_15351847_15351914 63.64 NA NA 60.00 NA NA 75.00 66.67 63.16 NA NA 63.64 NA 70.00 NA 69.23 75.00 NA NA 58.33 NA 44.44 55.56 NA NA 70.00 NA NA NA NA 41.67 NA NA 52.63 NA NA NA NA NA NA NA 72.73 66.67 NA NA NA NA NA 35.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA His3_3B,I_chrX_9048718_9050612,RI_chrX_9048719_9050312,I_chrX_9048719_9050361,I_chrX_9048719_9050368,RI_chrX_9050411_9050612 chrX - chrX_9048719_9050612 chrX_9050411_9050612 chrX_9050613_9050712;chrX_9048619_9048718 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.22 0.09 0.00 0.00 0.00 0.06 0.11 0.00 0.00 0.10 0.00 0.10 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.06 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.14 0.11 0.00 0.00 0.00 0.00 0.00 0.12 0.00 K intron_retention CG12576,RI_chrX_21878289_21882347,I_chrX_21882735_21882809,I_chrX_21882735_21883407,I_chrX_21882735_21883467,I_chrX_21882735_21883620,I_chrX_21882735_21883714 chrX - chrX_21882732_21883750 chrX_21882731_21882732;chrX_21883750_21883751 chrX_21882635_21882731;chrX_21883751_21883814 16.66 NA NA 35.71 NA NA 25.00 20.00 8.33 NA NA NA NA NA NA 28.57 NA NA NA 9.09 NA NA NA NA NA NA NA NA NA NA NA NA NA 13.33 NA NA NA NA NA NA NA 7.14 NA NA NA NA NA NA 21.43 NA NA NA NA NA NA NA NA 0.00 K alternative_donor CG8632,CG8646 chr2R + chr2R_8540631_8540686 chr2R_8540633_8540686 chr2R_8540687_8541563;chr2R_8540362_8540630 93.33 90.91 100.00 94.74 NA 88.89 90.91 100.00 95.00 NA NA 94.74 NA 80.00 100.00 100.00 NA 92.31 100.00 87.50 100.00 90.91 92.86 93.33 90.00 100.00 93.75 NA 86.67 100.00 90.91 100.00 90.00 100.00 NA 90.91 92.31 100.00 81.25 96.55 86.67 93.75 88.89 93.33 93.33 94.44 90.91 95.45 95.00 87.50 91.67 88.89 87.50 100.00 91.67 100.00 NA 90.00 K alternative_acceptor CG1161 chr3R + chr3R_1181851_1181905 chr3R_1181851_1181899 chr3R_1181725_1181850;chr3R_1181906_1181931 100.00 100.00 91.67 100.00 100.00 100.00 94.12 100.00 96.67 NA NA 100.00 93.33 100.00 100.00 100.00 100.00 93.33 100.00 97.14 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 90.00 100.00 95.45 100.00 100.00 100.00 100.00 91.67 NA 100.00 94.44 100.00 100.00 100.00 K alternative_acceptor CG17082,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_645254_645312;chr2R_645254_645316 chr2R_645254_645306 chr2R_645185_645253;chr2R_645317_645382 92.86 85.71 100.00 94.44 90.00 91.67 96.88 93.55 91.18 87.50 92.31 87.10 94.12 76.47 94.44 90.91 93.75 100.00 89.47 92.00 84.62 NA 100.00 95.00 100.00 93.75 100.00 88.89 100.00 90.91 90.00 85.71 100.00 94.12 92.31 90.91 90.00 88.89 100.00 95.24 92.86 97.14 94.44 71.43 91.67 95.00 88.89 90.00 94.44 95.83 93.75 81.82 100.00 100.00 86.21 91.67 95.45 92.86 K jcn_only_AD Pld,I_chr2R_2130639_2136916,RI_chr2R_2138358_2141112 chr2R + chr2R_2130225_2136916 chr2R_2130258_2136916 chr2R_2136917_2137016;chr2R_2130127_2130224 11.37 NA NA 26.09 NA NA NA 4.17 9.09 NA NA NA NA NA NA NA NA NA NA 7.41 NA NA NA NA NA NA NA NA NA NA NA NA NA 18.18 NA NA 0.00 NA 15.00 NA NA 13.64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG4747 chr2L + chr2L_10006418_10006474 chr2L_10006417_10006418;chr2L_10006474_10006475 chr2L_10005568_10006417;chr2L_10006475_10006585 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG2201 chr2L - chr2L_21615527_21615607 chr2L_21615526_21615527;chr2L_21615607_21615608 chr2L_21615103_21615526;chr2L_21615608_21615676 0.00 0.00 2.13 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10260 chrX + chrX_2519147_2519604 chrX_2519146_2519147;chrX_2519604_2519605 chrX_2519051_2519146;chrX_2519605_2519818 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27.59 0.00 0.00 0.00 0.00 2.78 7.14 0.00 0.00 4.76 0.00 1.92 0.00 0.00 2.00 0.00 1.45 2.78 0.00 NA 1.64 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention svr,RI_chrX_421417_421591 chrX + chrX_396970_397394 chrX_396969_396970;chrX_397394_397395 chrX_396869_396969;chrX_397395_397499 97.78 94.74 92.86 100.00 100.00 100.00 96.67 96.67 98.00 88.89 94.74 100.00 100.00 94.44 100.00 100.00 100.00 95.00 100.00 97.56 86.67 80.95 94.44 100.00 NA 100.00 91.67 90.91 NA 95.65 92.86 86.67 96.55 100.00 100.00 100.00 88.24 100.00 92.31 92.86 100.00 100.00 100.00 100.00 80.00 91.30 NA 94.74 97.30 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 96.67 K alternative_acceptor B52,F_chr3R_9488762_9491174,E_chr3R_9488770_9491174,RI_chr3R_9489655_9489713 chr3R + chr3R_9489655_9489733 chr3R_9489655_9489713 chr3R_9489631_9489654;chr3R_9489734_9489796 22.22 35.71 15.79 NA NA NA 31.25 45.45 46.88 20.00 23.53 27.78 38.46 31.25 40.00 32.00 33.33 29.41 41.18 28.57 17.65 29.41 21.43 16.00 11.11 NA 11.76 7.14 12.50 17.65 17.78 17.65 13.04 27.27 30.77 0.00 18.42 9.09 25.00 16.67 NA 32.14 40.00 19.51 29.41 12.50 14.29 21.43 35.71 15.00 11.76 22.22 NA 33.33 30.00 13.64 15.38 25.00 K intron_retention CG3074,E_chr2R_18078002_18079006,I_chr2R_18079355_18089994 chr2R - chr2R_18079073_18079166 chr2R_18079072_18079073;chr2R_18079166_18079167 chr2R_18079007_18079072;chr2R_18079167_18079354 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr2R_4927307_4927362,Ance-4,CG8193 chr2R - chr2R_4931087_4931141 chr2R_4931086_4931087;chr2R_4931141_4931142 chr2R_4930991_4931086;chr2R_4931142_4932203 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.46 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 K alternative_acceptor CG7231 chr2L + chr2L_7985769_7985833 chr2L_7985769_7985814 chr2L_7985553_7985768;chr2L_7985834_7986075 3.33 NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA 13.64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA K intron_retention CG13295 chr3L - chr3L_6068073_6068132 chr3L_6068072_6068073;chr3L_6068132_6068133 chr3L_6067949_6068072;chr3L_6068133_6068341 0.00 0.00 0.00 0.00 0.00 0.00 1.92 3.70 2.44 0.00 3.23 0.00 0.00 0.00 4.44 0.00 3.23 2.56 0.00 2.70 0.00 0.00 0.00 4.76 0.00 5.56 2.82 0.00 17.65 2.00 4.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 5.56 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG12213 chr3R - chr3R_7791209_7791266 chr3R_7791208_7791209;chr3R_7791266_7791267 chr3R_7791147_7791208;chr3R_7791267_7792008 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3L_1494947_1496080,pUf68,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1499880_1500244 chr3L_1499879_1499880;chr3L_1500244_1500245 chr3L_1499780_1499879;chr3L_1500245_1500308 53.85 63.64 NA 42.11 NA NA NA 56.25 72.73 NA 73.33 51.72 29.27 92.86 60.00 87.50 66.67 NA 75.00 81.25 NA 33.33 60.00 50.00 54.55 NA 63.64 36.36 NA 53.85 45.45 NA 35.71 73.33 69.23 36.36 46.15 NA NA 75.00 NA 69.23 NA 43.48 NA 47.06 37.50 42.86 81.25 43.75 38.10 30.77 NA NA 58.33 31.58 NA 50.00 K intron_retention CG32243 chr3L - chr3L_4540231_4540294 chr3L_4540230_4540231;chr3L_4540294_4540295 chr3L_4540085_4540230;chr3L_4540295_4540653 0.00 0.00 0.00 5.06 0.00 0.00 3.75 0.86 0.00 NA 6.25 1.41 0.00 0.00 0.00 0.00 0.00 0.00 1.64 1.15 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette lt,I_chr2L_22817840_22817968,RI_chr2L_22820498_22823377,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22818652_22831505 chr2L_22818652_22820169;chr2L_22820498_22831505 chr2L_22820170_22820497 chr2L_22818298_22818651;chr2L_22831506_22831546 100.00 98.78 100.00 99.22 100.00 98.63 99.48 99.47 99.52 100.00 100.00 100.00 98.96 100.00 98.86 99.40 100.00 100.00 100.00 98.77 100.00 100.00 100.00 98.73 98.25 100.00 98.84 100.00 97.44 100.00 99.34 97.37 100.00 99.47 100.00 98.25 100.00 100.00 96.61 98.96 97.67 99.46 100.00 100.00 100.00 100.00 100.00 98.55 99.49 98.11 99.08 100.00 100.00 100.00 100.00 98.25 98.78 100.00 K intron_retention CG14701,RI_chr3R_7061265_7061322 chr3R + chr3R_7057847_7057915 chr3R_7057846_7057847;chr3R_7057915_7057916 chr3R_7057674_7057846;chr3R_7057916_7057990 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 6.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 5.56 0.00 6.45 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 1.27 0.00 0.00 0.00 0.00 K intron_retention ena chr2R + chr2R_15039533_15046238 chr2R_15039532_15039533;chr2R_15046238_15046239 chr2R_15039410_15039532;chr2R_15046239_15046560 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.93 0.00 0.00 0.00 1.94 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG8001 chr3L + chr3L_1757204_1757321 chr3L_1757204_1757306 chr3L_1756612_1757203;chr3L_1757322_1758146 0.00 0.00 0.00 1.52 0.00 1.96 0.00 1.85 1.30 5.00 3.57 1.43 0.00 3.33 0.00 0.00 4.35 2.38 0.00 0.93 0.00 0.00 1.82 0.00 0.00 2.56 2.50 0.00 1.52 1.96 0.00 1.61 1.12 1.67 0.00 0.00 2.94 0.00 2.70 0.00 1.92 0.00 0.00 0.00 0.00 1.47 0.00 0.93 1.23 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.95 K intron_retention Bruce chr3R - chr3R_6139361_6139434 chr3R_6139360_6139361;chr3R_6139434_6139435 chr3R_6138932_6139360;chr3R_6139435_6139903 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor RpL36A,I_chr2L_8042126_8042468,snoRNA:Psi28S-2648 chr2L - chr2L_8042126_8042468 chr2L_8042126_8042439 chr2L_8042026_8042125;chr2L_8042469_8042568 99.98 100.00 100.00 99.99 100.00 99.96 99.98 99.99 99.98 100.00 99.97 100.00 99.95 100.00 99.98 99.98 100.00 99.98 99.98 99.97 99.98 99.97 100.00 99.98 100.00 100.00 99.98 100.00 99.98 99.98 100.00 99.96 99.99 99.99 99.97 99.91 99.93 100.00 99.99 99.99 99.95 99.96 99.97 99.97 99.95 99.97 100.00 100.00 99.98 100.00 99.96 100.00 99.96 100.00 99.98 99.98 99.99 99.97 K alternative_donor bif,I_chrX_11581793_11583233 chrX + chrX_11573223_11574876 chrX_11573323_11574876 chrX_11574877_11575147;chrX_11573031_11573222 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 94.74 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 94.12 100.00 100.00 100.00 NA NA 100.00 NA 100.00 92.31 NA 100.00 NA 85.71 NA 100.00 NA NA 100.00 K jcn_only_AA CG7414,I_chr3L_21819515_21819581 chr3L + chr3L_21819515_21819581 chr3L_21819515_21819574 chr3L_21819415_21819514;chr3L_21819582_21819681 100.00 100.00 99.63 100.00 100.00 100.00 100.00 100.00 99.79 100.00 99.47 99.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.80 100.00 100.00 100.00 100.00 98.60 100.00 100.00 99.13 100.00 100.00 100.00 99.46 100.00 100.00 99.72 99.81 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.49 99.74 100.00 99.16 100.00 100.00 100.00 100.00 100.00 100.00 99.27 K cassette Atpalpha,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16783890_16789446;chr3R_16785103_16789446 chr3R_16783890_16786447,chr3R_16785103_16786447;chr3R_16786552_16789446 chr3R_16786448_16786551 chr3R_16783790_16783889;chr3R_16789447_16789578 2.56 1.59 1.64 0.83 1.39 2.27 0.66 2.04 1.95 4.17 16.46 4.35 2.04 2.56 0.00 1.75 0.98 1.85 0.00 4.48 4.29 1.45 2.70 2.44 2.56 0.00 3.57 6.25 16.67 5.00 5.00 0.00 4.44 1.23 3.17 0.00 5.00 3.03 2.63 4.23 7.14 0.62 1.64 1.47 6.67 5.00 5.26 2.78 0.65 2.00 2.70 5.26 0.00 2.86 1.15 0.00 10.71 5.26 K jcn_only_AD RpL36,RI_chrX_522912_523358,I_chrX_522932_523360,I_chrX_522949_523360 chrX - chrX_522912_523360;chrX_522912_523215;chrX_522912_523414;chrX_522912_523194;chrX_522912_523323 chrX_522912_523389 chrX_522849_522911;chrX_523415_523436 0.65 0.30 0.56 0.51 0.89 0.72 0.72 0.82 0.79 0.53 0.00 0.33 0.40 1.30 0.71 1.37 0.53 0.00 0.00 1.08 0.00 1.02 0.00 0.50 0.61 0.00 0.28 1.17 1.24 0.71 0.71 0.69 0.54 1.86 0.90 1.23 0.40 0.54 0.00 0.45 1.80 0.82 0.00 0.35 0.65 1.48 0.23 1.72 0.67 1.19 0.88 0.32 0.73 0.53 2.95 0.00 0.59 0.72 K intron_retention dNAT1,CG13319,RI_chr2R_8812301_8816468 chr2R + chr2R_8803570_8805499 chr2R_8803569_8803570;chr2R_8805499_8805500 chr2R_8803506_8803569;chr2R_8805500_8808364 0.00 0.00 0.74 1.20 0.00 0.93 2.24 0.72 1.53 0.00 1.57 0.77 1.69 1.33 0.00 0.00 0.00 0.74 1.01 0.30 0.77 1.69 2.61 1.37 0.00 0.00 5.00 8.11 0.00 0.00 0.00 0.00 2.78 0.00 4.26 0.00 0.00 0.00 0.00 2.25 5.88 0.65 0.00 1.67 0.00 3.70 3.17 0.00 1.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG42360,RI_chr2R_20495045_20495115,RI_chr2R_20497443_20497538 chr2R + chr2R_20496817_20496876 chr2R_20496816_20496817;chr2R_20496876_20496877 chr2R_20496622_20496816;chr2R_20496877_20497442 0.00 NA NA 9.52 NA NA 19.05 11.76 0.00 NA 0.00 0.00 NA 0.00 0.00 17.65 NA 0.00 NA 5.13 NA 0.00 NA NA NA NA NA NA NA NA 14.81 NA NA 3.33 NA NA 0.00 NA NA 0.00 NA 7.41 NA 0.00 NA NA NA NA 6.90 NA NA NA NA NA 0.00 NA NA 7.41 K intron_retention CG34133,F_chr3R_25696884_25696960 chr3R + chr3R_25695777_25696781 chr3R_25695776_25695777;chr3R_25696781_25696782 chr3R_25695572_25695776;chr3R_25696782_25696871 0.00 0.00 0.00 1.96 0.00 0.00 12.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.29 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K jcn_only_AA Dscam,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3251271_3255892;chr2R_3254472_3255892;chr2R_3253610_3255892;chr2R_3250700_3255892;chr2R_3252685_3255892;chr2R_3252399_3255892;chr2R_3250996_3255892;chr2R_3254133_3255892;chr2R_3252123_3255892;chr2R_3252988_3255892 chr2R_3251854_3255892 chr2R_3255893_3255920 6.25 6.06 7.69 7.14 6.25 23.81 7.41 9.76 4.29 NA NA 14.29 NA 0.00 13.95 13.33 9.52 NA 0.00 2.22 9.38 6.67 5.77 2.56 10.53 3.33 4.08 4.17 0.00 18.60 8.33 NA 10.91 10.87 7.69 7.69 3.03 6.45 4.62 5.97 NA 3.92 15.00 5.13 NA 4.35 3.70 8.82 5.56 0.00 15.91 8.70 NA NA 4.00 4.35 0.00 NA K intron_retention CG3008,CG15625 chr2L + chr2L_4884340_4884390 chr2L_4884339_4884340;chr2L_4884390_4884391 chr2L_4883646_4884339;chr2L_4884391_4885670 0.00 0.00 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.84 0.00 0.71 0.00 1.62 1.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Tsp42El chr2R + chr2R_2934941_2935005 chr2R_2934940_2934941;chr2R_2935005_2935006 chr2R_2934782_2934940;chr2R_2935006_2935161 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 5.56 0.00 NA 0.00 0.00 7.69 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Shawn_Tyler,CG14213 chrX + chrX_19533110_19533177 chrX_19533109_19533110;chrX_19533177_19533178 chrX_19532929_19533109;chrX_19533178_19533426 86.17 88.73 82.61 85.60 85.48 88.73 93.00 86.73 89.93 80.95 84.21 81.13 91.49 89.23 87.50 87.95 90.32 78.57 93.33 88.52 77.78 81.97 82.61 87.18 90.38 90.41 88.89 88.89 87.27 84.44 80.30 92.50 86.67 83.47 89.23 95.83 77.63 80.77 82.72 79.80 86.54 90.85 85.25 80.56 82.35 86.17 83.33 90.91 87.05 85.71 84.44 80.95 79.59 85.71 90.22 87.50 83.13 76.74 K jcn_only_AA CG8184,I_chrX_15620707_15620769 chrX + chrX_15615433_15615596 chrX_15615433_15615578 chrX_15610325_15615432;chrX_15615597_15617013 71.15 70.49 69.35 81.58 65.31 78.57 52.38 62.24 63.64 72.41 67.24 69.15 68.42 75.68 64.63 72.41 64.41 76.09 75.61 62.50 71.15 79.73 75.00 64.81 61.11 76.36 71.88 74.19 70.83 73.88 80.00 NA 75.81 71.25 69.49 78.57 74.02 64.18 73.39 68.10 78.43 74.15 65.22 74.73 66.67 69.05 64.52 73.87 70.10 61.90 64.52 76.32 59.26 NA 71.43 76.00 60.00 75.00 K intron_retention Gmer chr2R - chr2R_18775931_18775988 chr2R_18775930_18775931;chr2R_18775988_18775989 chr2R_18775373_18775930;chr2R_18775989_18776103 0.00 6.67 3.45 0.00 NA 0.00 3.85 0.00 7.32 NA 0.00 4.55 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.70 0.00 20.00 0.00 0.00 0.00 5.56 8.82 NA 21.05 0.00 16.13 0.00 0.00 8.00 0.00 3.85 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 4.76 0.00 6.67 0.00 0.00 0.00 0.00 2.27 2.86 K jcn_only_AA CG3760,CG3770,CG12851 chr2R + chr2R_20826741_20826793;chr2R_20826741_20826796 chr2R_20826741_20826799 chr2R_20826672_20826740;chr2R_20826800_20826860 1.43 0.60 0.71 2.16 0.85 5.22 1.98 1.37 0.40 2.40 2.97 0.00 0.00 1.10 2.36 2.06 3.85 1.06 0.00 1.61 2.73 1.06 2.29 0.74 1.88 1.90 2.79 3.33 0.81 1.84 0.00 1.12 2.11 4.32 2.20 0.67 1.24 0.68 1.04 0.35 1.44 2.05 1.19 1.44 0.84 1.50 1.41 0.86 3.24 0.89 1.14 0.74 1.43 1.72 1.63 2.03 2.02 1.22 K alternative_donor l(2)k05819,I_chr2L_4396173_4396266 chr2L + chr2L_4396173_4396809;chr2L_4396407_4396809 chr2L_4396128_4396809 chr2L_4396810_4396906;chr2L_4396073_4396127 53.21 50.82 48.65 38.24 51.39 52.38 46.23 51.52 56.74 61.11 34.48 67.65 55.56 41.38 41.18 50.50 59.09 36.67 32.26 49.40 46.88 60.38 56.98 48.57 64.41 18.03 42.70 18.75 64.18 56.00 55.07 33.33 70.89 53.21 56.82 42.22 62.41 70.00 60.91 54.55 62.50 55.17 42.59 62.24 51.72 52.50 54.55 65.00 51.75 36.36 58.11 52.83 68.75 64.29 41.86 63.16 70.21 76.19 K intron_retention CG13025 chr3L - chr3L_16771254_16771314 chr3L_16771253_16771254;chr3L_16771314_16771315 chr3L_16770689_16771253;chr3L_16771315_16772872 0.00 0.00 NA 10.00 NA NA 14.29 0.00 3.33 NA NA 23.53 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 8.00 NA NA NA NA NA 20.00 9.09 6.06 NA NA NA NA NA 5.88 NA 0.00 K jcn_only_AD nes chr3L - chr3L_19253331_19253632;chr3L_19253331_19253609;chr3L_19253331_19253676;chr3L_19253331_19253648;chr3L_19253331_19253745;chr3L_19253331_19253764 chr3L_19253331_19253636 chr3L_19253215_19253330;chr3L_19253765_19253779 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.00 4.35 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 1.33 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2392054 chrX_2387249_2388436;chrX_2388671_2389073;chrX_2389272_2389644;chrX_2389762_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2392054 chrX_2388437_2388670;chrX_2389074_2389271;chrX_2389645_2389761;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2392055_2392148 100.00 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA 66.67 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA K alternative_donor CG12182,I_chr3L_2599071_2599124,I_chr3L_2629527_2629921 chr3L - chr3L_2599071_2599264 chr3L_2599071_2599124 chr3L_2598971_2599070;chr3L_2599265_2599380 25.00 NA NA NA NA NA NA 25.00 7.69 NA NA 30.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Glued chr3L + chr3L_13922588_13922750 chr3L_13922642_13922750 chr3L_13922751_13922815;chr3L_13922526_13922587 97.22 88.57 95.92 94.37 NA 98.11 95.00 94.03 97.22 100.00 96.77 97.56 100.00 97.50 100.00 98.61 NA 93.33 100.00 100.00 94.87 96.00 94.37 96.92 96.55 100.00 87.18 96.97 96.55 100.00 91.18 100.00 97.92 96.30 97.22 93.88 93.02 100.00 97.87 95.59 96.55 97.62 NA 97.67 100.00 100.00 100.00 98.21 98.68 95.24 97.06 97.73 100.00 NA 92.31 87.50 100.00 96.77 K jcn_only_AD CG11309,I_chr3L_21297192_21297708 chr3L - chr3L_21297192_21297389;chr3L_21297192_21297487 chr3L_21297192_21297542 chr3L_21297092_21297191;chr3L_21297543_21297554 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA NA 2.08 NA NA 0.00 0.00 NA NA NA 4.76 NA NA NA NA 0.00 NA 3.03 0.00 0.00 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA 0.00 2.78 NA NA NA NA NA 0.00 NA 0.00 0.00 K intron_retention scny,I_chr3L_5763034_5768288 chr3L + chr3L_5763034_5764717 chr3L_5763033_5763034;chr3L_5764717_5764718 chr3L_5762934_5763033;chr3L_5764718_5764893 8.20 9.30 8.20 7.69 7.55 8.00 7.32 5.56 8.33 8.00 8.00 7.45 8.51 6.52 8.00 8.22 9.80 9.52 5.56 8.20 7.55 13.41 11.71 10.34 6.98 11.76 9.52 7.87 8.22 7.14 12.24 8.93 8.33 7.23 6.90 6.56 6.37 10.87 7.78 9.39 2.78 8.91 13.73 10.08 12.07 8.57 8.16 4.35 9.30 6.38 9.01 9.09 5.97 5.71 7.27 14.75 10.00 4.04 K intron_retention b6,CG14798 chrX + chrX_1581351_1582513 chrX_1581350_1581351;chrX_1582513_1582514 chrX_1580553_1581350;chrX_1582514_1582607 87.50 66.67 NA NA 87.50 NA 90.91 77.78 89.47 NA NA NA NA 72.73 72.73 NA NA 87.50 NA 88.24 NA NA NA NA NA NA 87.50 NA NA NA 91.67 NA NA 83.33 NA NA 87.50 NA 66.67 NA NA 85.71 66.67 NA NA NA NA NA 60.00 NA 88.89 NA NA NA 88.89 NA NA NA K jcn_only_AD mld,atl chr3R + chr3R_20451535_20457504 chr3R_20451677_20457504 chr3R_20457505_20457813;chr3R_20451524_20451534 2.94 0.00 3.33 2.86 NA 0.00 1.89 6.00 4.76 NA 0.00 2.33 3.85 3.23 11.11 1.79 3.57 NA 0.00 1.56 3.45 0.00 0.00 7.69 NA 7.14 0.00 0.00 12.50 2.27 0.00 9.09 3.23 6.82 0.00 0.00 6.45 7.41 NA 3.03 3.70 9.30 NA 4.48 6.45 0.00 3.12 0.00 1.64 9.09 0.00 7.69 0.00 0.00 2.70 0.00 NA 4.88 K intron_retention CG3831,I_chr2R_18827582_18828137,I_chr2R_18828053_18828484,RI_chr2R_18828192_18828484 chr2R - chr2R_18828053_18828137 chr2R_18828052_18828053;chr2R_18828137_18828138 chr2R_18827953_18828052;chr2R_18828138_18828191 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention Eps-15,I_chr2R_20660319_20660496,CRE_chr2R_20660823_20660880 chr2R - chr2R_20660319_20660463 chr2R_20660318_20660319;chr2R_20660463_20660464 chr2R_20660219_20660318;chr2R_20660464_20660526 0.00 0.93 0.00 2.48 0.00 0.00 2.70 2.26 0.47 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.00 1.92 0.00 1.22 0.00 0.00 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.81 0.00 0.00 0.00 3.19 2.08 0.00 0.00 N jcn_only_AA RhoGAP18B chrX - chrX_19047302_19047377 chrX_19047314_19047377 chrX_19047378_19047520;chrX_19047061_19047301 0.00 0.00 0.00 0.00 NA NA 25.53 41.94 27.94 0.00 0.00 27.08 NA NA 0.00 35.48 0.00 28.81 34.38 32.79 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 29.41 29.41 0.00 0.00 0.00 0.00 0.00 0.00 21.62 NA 26.42 NA 0.00 24.10 17.19 0.00 20.00 25.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.70 K intron_retention CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4985955_4986016 chr2L_4985954_4985955;chr2L_4986016_4986017 chr2L_4985862_4985954;chr2L_4986017_4987089 6.67 10.34 5.71 0.00 0.00 6.25 7.41 0.00 7.23 8.70 17.86 5.97 7.14 10.81 6.25 3.51 12.90 6.67 10.71 5.80 13.33 10.53 3.95 5.17 3.92 5.13 4.05 11.76 10.45 6.00 9.80 20.83 11.36 4.35 9.80 8.20 5.36 2.27 5.26 7.37 5.71 2.35 6.67 8.16 20.83 4.26 11.11 8.57 6.76 17.07 7.81 7.50 0.00 4.76 1.92 0.00 8.00 0.00 K jcn_only_AA None chrU + chrU_1178980_1179256;chrU_1178980_1179142 chrU_1178980_1183262 23.81 NA NA NA NA NA NA NA 15.62 NA NA 18.18 NA NA NA 23.81 NA NA 28.57 30.77 NA NA NA NA NA NA NA NA NA NA 10.00 NA NA 42.31 NA NA NA NA NA 10.00 NA 22.22 NA NA NA NA NA NA 29.63 30.00 NA NA NA NA NA NA NA NA K alternative_acceptor spir,I_chr2L_20334199_20334626,I_chr2L_20336550_20339058 chr2L + chr2L_20336405_20336466;chr2L_20336405_20336469 chr2L_20336405_20336463 chr2L_20336338_20336404;chr2L_20336470_20336529 13.79 14.29 13.64 17.78 20.83 12.12 11.11 14.04 16.88 7.69 13.79 17.54 11.54 16.00 10.81 11.36 12.90 11.11 12.82 16.13 12.00 15.75 16.36 10.64 16.67 8.82 11.63 14.04 15.52 12.50 15.15 10.71 12.07 15.00 16.22 10.81 10.00 19.35 16.00 14.49 12.00 12.35 13.79 8.93 13.46 11.76 16.22 14.06 14.29 18.87 13.64 25.93 11.11 15.15 14.58 13.51 11.36 13.79 K jcn_only_AA blow,RI_chr2R_3470434_3470776 chr2R - chr2R_3472844_3474436 chr2R_3472863_3474436 chr2R_3474437_3474581;chr2R_3472561_3472843 98.53 98.15 100.00 100.00 96.67 97.92 98.33 98.84 100.00 100.00 95.92 98.04 91.43 98.04 100.00 100.00 97.78 100.00 98.18 98.00 100.00 97.62 97.70 96.49 97.50 100.00 100.00 100.00 98.86 98.53 94.29 97.96 98.52 98.95 100.00 100.00 100.00 97.78 97.47 98.35 93.85 98.25 95.24 100.00 100.00 97.86 100.00 97.64 99.13 96.43 98.68 100.00 100.00 100.00 100.00 100.00 98.80 98.39 K intron_retention RPA2,RI_chr2L_20925851_20925909 chr2L - chr2L_20925851_20925913 chr2L_20925850_20925851;chr2L_20925913_20925914 chr2L_20925751_20925850;chr2L_20925914_20925975 2.73 2.23 2.27 1.30 1.38 1.49 3.76 1.32 1.91 2.11 3.85 2.27 3.65 0.81 1.11 0.00 0.76 1.43 2.11 2.45 3.27 7.80 4.74 3.54 9.89 8.93 5.99 4.02 20.22 0.00 5.08 2.63 2.34 2.17 4.30 5.31 2.54 2.17 2.91 3.98 16.36 2.11 0.00 2.91 3.29 3.23 3.24 6.82 2.66 3.29 4.29 2.40 2.08 2.73 3.53 3.90 2.17 4.90 K intron_retention E_chr3R_20923460_20923586,CG33096,CG33095 chr3R + chr3R_20923441_20923586 chr3R_20923440_20923441;chr3R_20923586_20923587 chr3R_20923364_20923440;chr3R_20923587_20923686 100.00 95.00 100.00 100.00 100.00 100.00 100.00 96.88 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 97.83 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 96.88 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N cassette htt,I_chr3R_24527763_24528033,I_chr3R_24542203_24543363 chr3R + chr3R_24547447_24549542 chr3R_24547447_24547531;chr3R_24547720_24549542 chr3R_24547532_24547719 chr3R_24546562_24547446;chr3R_24549543_24549791 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.27 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor wge chr3R - chr3R_18542354_18542655;chr3R_18542387_18542655 chr3R_18542390_18542655 chr3R_18542656_18542685;chr3R_18540256_18542353 4.28 3.23 0.00 5.00 14.29 NA 20.00 0.00 7.32 0.00 NA 3.23 NA 15.38 0.00 11.11 NA NA 10.00 9.68 0.00 10.71 6.98 4.00 4.55 0.00 4.00 10.00 5.71 3.12 7.14 8.33 1.27 0.00 3.57 10.34 2.00 0.00 4.55 8.20 8.00 8.11 9.09 3.12 0.00 5.88 0.00 6.06 10.00 0.00 10.71 0.00 0.00 0.00 0.00 13.33 0.00 2.70 K intron_retention zfh1,C_chr3R_26609726_26610312 chr3R + chr3R_26600420_26609664 chr3R_26600419_26600420;chr3R_26609664_26609665 chr3R_26599709_26600419;chr3R_26609665_26609725 9.26 6.29 5.19 11.11 12.28 14.06 10.67 6.80 7.50 9.35 20.93 8.66 4.65 10.61 15.38 3.28 11.63 15.69 9.52 11.11 10.87 16.73 8.09 8.70 8.80 16.67 8.25 27.27 12.68 12.30 11.76 9.62 6.67 7.38 9.26 10.85 5.41 12.93 5.45 8.90 19.05 7.77 10.26 5.04 6.52 5.56 3.70 11.67 10.55 9.21 6.33 10.64 5.26 5.00 9.80 5.45 8.93 3.45 K intron_retention I_chr3R_22696095_22697413,Rb97D chr3R - chr3R_22699278_22699581 chr3R_22699277_22699278;chr3R_22699581_22699582 chr3R_22698253_22699277;chr3R_22699582_22699720 60.00 61.90 57.14 75.68 59.09 60.00 68.75 68.18 59.26 40.00 61.54 64.41 66.67 69.57 62.96 73.33 69.57 71.43 60.71 67.14 31.25 26.83 58.70 63.16 60.71 50.00 58.97 77.27 54.17 51.52 67.86 59.09 35.48 67.27 60.71 60.00 41.30 42.11 40.43 60.00 68.75 55.32 57.69 53.12 42.31 53.66 60.47 69.57 67.92 50.00 60.00 64.29 60.00 63.16 64.00 56.10 57.45 69.57 K alternative_acceptor RpL11,I_chr2R_15330246_15330292,I_chr2R_15330603_15330817 chr2R + chr2R_15330246_15330292;chr2R_15330246_15330317 chr2R_15330246_15330305 chr2R_15330177_15330245;chr2R_15330318_15330383 99.95 99.97 99.92 99.95 99.90 99.96 99.95 99.90 99.98 99.88 99.96 99.98 99.95 99.94 99.94 99.94 99.94 100.00 99.95 99.95 99.87 99.92 99.96 99.95 99.89 100.00 99.92 99.87 99.64 99.89 99.85 100.00 99.96 99.97 99.95 99.92 100.00 99.93 99.97 99.91 99.89 99.98 100.00 100.00 99.95 99.94 99.95 99.95 99.94 99.94 99.95 100.00 99.96 99.93 99.96 99.98 99.98 99.90 K cassette bl,I_chr2R_16481586_16483061 chr2R + chr2R_16475250_16483061 chr2R_16475250_16477121;chr2R_16477173_16483061 chr2R_16477122_16477172 chr2R_16475071_16475249;chr2R_16483062_16483161 4.69 4.65 4.04 13.45 3.28 4.49 0.85 7.33 6.44 4.76 3.77 NA 1.41 4.35 3.19 5.30 6.59 2.88 4.24 19.52 3.33 2.75 4.00 4.55 1.54 1.82 2.25 1.52 9.21 4.40 7.26 7.69 5.88 5.81 7.58 7.50 4.17 3.57 8.22 2.31 5.08 5.26 3.61 2.65 4.94 6.80 7.59 9.79 4.69 1.47 5.38 6.78 6.06 4.69 3.97 6.49 4.71 4.90 K jcn_only_AA Trf,I_chr2L_8073126_8073167 chr2L + chr2L_8073126_8073196 chr2L_8073126_8073167 chr2L_8073026_8073125;chr2L_8073197_8073267 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 2.78 0.00 0.00 0.00 0.00 0.00 0.00 1.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 2.22 0.00 2.06 0.00 0.00 4.00 0.00 0.00 2.80 1.04 3.33 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 2.20 0.72 K cassette CaMKII,I_chr4_1059085_1060638,I_chr4_1059085_1065781,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,RI_chr4_1071489_1071968,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1058367_1065781 chr4_1058367_1058984;chr4_1059064_1065781 chr4_1058985_1059063 chr4_1058272_1058366;chr4_1065782_1065874 93.38 92.86 100.00 90.91 87.50 91.30 87.27 92.59 91.30 NA 100.00 89.58 68.00 100.00 83.33 97.62 96.15 100.00 95.00 100.00 93.33 85.71 93.33 93.33 77.78 94.12 84.21 87.50 69.23 100.00 97.22 94.12 90.91 96.36 92.86 93.75 100.00 85.71 100.00 95.65 90.00 86.67 96.67 94.12 100.00 94.12 93.33 85.00 93.44 94.74 93.75 84.62 90.91 90.00 94.29 100.00 95.45 100.00 K alternative_donor CG9293,RI_chr2L_13386386_13386487,I_chr2L_13394941_13395015 chr2L - chr2L_13386258_13386529 chr2L_13386258_13386487 chr2L_13386099_13386257;chr2L_13386530_13386587 4.65 8.33 2.94 4.65 5.00 0.00 11.76 4.17 2.90 0.00 0.00 8.16 0.00 3.45 5.71 5.41 5.00 16.67 0.00 3.53 5.00 2.08 4.35 0.00 NA 6.25 5.88 0.00 10.87 5.26 7.69 6.67 2.78 2.00 4.17 14.81 2.70 5.56 3.23 6.35 8.89 8.00 0.00 6.45 8.24 0.00 0.00 6.74 1.85 7.41 4.76 NA 6.67 0.00 3.03 2.78 3.45 7.94 K intron_retention I_chr2R_8312580_8312637,CG8525 chr2R + chr2R_8313268_8313320 chr2R_8313267_8313268;chr2R_8313320_8313321 chr2R_8313214_8313267;chr2R_8313321_8313904 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.27 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 2.44 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG32638,I_chrX_13017877_13022283 chrX - chrX_13017877_13022283 chrX_13017877_13020100;chrX_13020248_13022283 chrX_13020101_13020247 chrX_13017807_13017876;chrX_13022284_13022383 100.00 100.00 99.40 99.61 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.57 99.11 100.00 100.00 99.57 100.00 100.00 100.00 100.00 100.00 100.00 99.53 100.00 100.00 100.00 99.42 98.82 92.13 100.00 100.00 100.00 99.46 100.00 100.00 100.00 100.00 100.00 100.00 99.51 100.00 100.00 99.30 99.35 100.00 100.00 99.24 100.00 99.68 99.38 99.35 100.00 100.00 100.00 100.00 100.00 100.00 99.51 K mutually_exclusive ens,I_chr3L_4130719_4131120 chr3L - chr3L_4127163_4128307,chr3L_4128974_4131120;chr3L_4127163_4129650,chr3L_4129792_4131120 chr3L_4127163_4130388,chr3L_4130644_4131120 chr3L_4128308_4128973;chr3L_4129651_4129791 chr3L_4130389_4130643 chr3L_4126989_4127162;chr3L_4131121_4131220 0.72 0.97 1.11 0.72 0.00 0.00 1.03 0.76 0.55 0.00 1.18 0.67 0.00 1.22 1.08 1.64 1.14 0.00 0.00 0.63 1.37 0.65 0.64 0.81 1.01 0.00 0.82 0.00 0.00 0.87 0.88 1.61 0.75 1.37 0.98 1.59 0.56 0.79 0.00 0.52 0.00 0.51 1.37 0.73 0.00 1.15 0.00 0.68 0.70 0.00 0.65 1.05 0.00 0.00 0.98 1.20 0.00 1.32 K intron_retention CG3056,REI_chrX_1265808_1265906 chrX + chrX_1265808_1265947 chrX_1265807_1265808;chrX_1265947_1265948 chrX_1265708_1265807;chrX_1265948_1266006 2.82 0.00 5.71 5.17 0.00 0.00 8.77 2.94 1.87 3.33 0.00 4.05 0.00 0.00 3.33 0.00 3.45 0.00 0.00 1.87 0.00 7.59 2.82 0.00 5.88 4.76 3.90 15.15 0.00 0.00 10.53 3.45 2.27 5.56 4.35 1.96 6.45 4.88 0.00 1.25 6.67 3.61 3.23 2.04 4.65 4.26 0.00 3.08 4.76 8.33 0.00 0.00 0.00 3.45 0.00 1.92 0.00 1.92 K intron_retention CG14130 chr3L + chr3L_11809159_11809222 chr3L_11809158_11809159;chr3L_11809222_11809223 chr3L_11808991_11809158;chr3L_11809223_11809593 0.00 0.00 0.00 NA NA 0.00 8.33 0.00 0.00 NA NA 0.00 NA 7.69 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 5.56 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA NA 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 1.67 K jcn_only_AD cnc,I_chr3R_19014852_19016738,I_chr3R_19046366_19046507,I_chr3R_19046619_19047567 chr3R - chr3R_19046366_19047563;chr3R_19046366_19047567 chr3R_19046366_19046507 chr3R_19046266_19046365;chr3R_19047568_19047667 5.00 NA NA 20.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 13.64 NA NA NA NA NA NA NA NA 5.00 NA 4.55 NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA K alternative_donor ben chrX + chrX_13890791_13892127;chrX_13891016_13892127;chrX_13890793_13892127;chrX_13890762_13892127;chrX_13890795_13892127;chrX_13890990_13892127;chrX_13890831_13892127;chrX_13890768_13892127;chrX_13890648_13892127 chrX_13890789_13892127 chrX_13892128_13892800;chrX_13890644_13890647 0.00 NA NA 16.67 NA NA 0.00 0.00 40.00 NA NA 0.00 0.00 0.00 0.00 40.00 NA NA 0.00 33.33 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA 33.33 33.33 NA NA NA NA NA 50.00 NA 0.00 0.00 NA NA 100.00 NA 0.00 16.67 0.00 NA NA NA NA 25.00 NA 33.33 100.00 K intron_retention msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585733_2586413 chr3L_2585732_2585733;chr3L_2586413_2586414 chr3L_2585639_2585732;chr3L_2586414_2586502 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 K jcn_only_AA Ada2b,RI_chr3R_4068335_4068401 chr3R - chr3R_4063905_4064452 chr3R_4063975_4064452 chr3R_4064453_4065328;chr3R_4063825_4063904 44.26 40.00 42.22 37.31 53.12 36.36 31.43 55.77 39.73 47.62 32.14 54.39 59.09 34.38 48.57 51.35 50.00 22.22 53.57 37.78 38.24 59.12 46.15 38.27 45.24 51.61 43.02 53.06 44.94 33.96 47.37 31.37 37.93 44.26 43.24 40.35 50.63 50.79 34.07 45.28 55.81 47.76 37.04 41.18 41.94 41.49 50.00 32.50 52.54 50.00 50.75 40.38 31.43 34.88 48.89 46.00 35.59 48.98 K alternative_acceptor CG3744,I_chr3R_20701248_20701968 chr3R - chr3R_20698972_20699080 chr3R_20699005_20699080 chr3R_20699081_20699684;chr3R_20698660_20698971 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention bigmax,E_chr3R_23113334_23113889 chr3R - chr3R_23113442_23113506 chr3R_23113441_23113442;chr3R_23113506_23113507 chr3R_23113087_23113441;chr3R_23113507_23113569 0.00 0.00 0.00 4.05 0.00 0.00 1.49 0.00 0.00 0.00 0.00 2.70 4.65 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 14.29 0.00 0.00 0.00 0.00 5.56 0.00 12.31 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 1.59 1.64 2.47 1.20 0.00 0.00 0.00 1.16 0.00 2.20 2.82 5.00 5.00 0.00 4.00 0.00 1.67 0.00 1.32 3.08 K intron_retention RnrS,I_chr2R_7872603_7872720 chr2R - chr2R_7872573_7872720 chr2R_7872572_7872573;chr2R_7872720_7872721 chr2R_7872503_7872572;chr2R_7872721_7872820 1.54 0.53 2.20 2.58 0.00 0.59 2.60 1.38 1.57 2.50 1.54 2.49 2.44 1.37 1.49 1.08 1.05 1.96 2.13 1.49 1.32 2.44 2.13 2.08 0.00 0.57 3.21 2.63 2.78 1.85 1.20 2.70 0.00 1.37 1.72 0.00 1.27 1.96 1.27 2.34 3.23 0.58 0.66 2.19 0.00 0.00 1.24 0.00 1.72 1.72 1.09 1.94 1.69 2.05 0.86 0.70 2.56 0.00 K jcn_only_AA Hr78,I_chr3L_21490089_21490390,CG33214 chr3L - chr3L_21490008_21490390;chr3L_21490089_21490390;chr3L_21489978_21490390 chr3L_21490023_21490390 chr3L_21490391_21490490;chr3L_21489920_21489977 22.22 NA NA 23.53 NA NA 16.00 20.59 33.33 NA NA NA 15.00 NA NA 15.15 NA NA NA 34.78 NA NA NA NA NA NA NA NA NA NA NA NA NA 22.22 NA NA NA NA NA NA NA 22.22 NA NA NA NA NA NA 19.23 NA NA NA NA NA 27.27 NA NA NA K intron_retention CG5646,I_chr3R_23386250_23386484,I_chr3R_23386287_23386484 chr3R - chr3R_23386237_23386484 chr3R_23386236_23386237;chr3R_23386484_23386485 chr3R_23386187_23386236;chr3R_23386485_23386584 17.65 18.75 6.25 4.76 NA 17.65 14.29 10.00 12.77 NA NA 9.09 NA 11.76 17.65 15.38 NA 25.00 12.00 4.76 10.53 37.50 12.82 17.86 NA NA 23.68 14.81 20.00 27.27 10.26 35.29 40.00 15.15 12.50 26.32 9.09 21.74 37.04 29.17 20.00 9.09 31.25 16.22 22.22 16.13 12.50 33.33 23.08 30.00 25.00 11.76 NA 19.05 9.52 19.05 6.25 21.43 K jcn_only_AA Bruce chr3R - chr3R_6141764_6141923 chr3R_6141797_6141923 chr3R_6141924_6143270;chr3R_6141518_6141763 98.01 97.25 99.06 98.76 100.00 96.15 94.51 97.65 97.71 98.11 97.87 97.74 100.00 100.00 97.06 98.52 100.00 96.74 100.00 99.57 98.65 95.95 94.74 95.40 98.86 98.92 96.46 95.89 98.18 96.39 100.00 95.16 98.17 99.29 96.55 99.01 98.01 97.50 98.32 99.33 98.15 98.01 97.85 99.33 86.11 94.32 88.33 96.94 97.07 98.31 95.12 100.00 97.67 98.08 96.55 98.53 96.88 98.84 K intron_retention Trxr-1 chrX + chrX_8138093_8140126 chrX_8138092_8138093;chrX_8140126_8140127 chrX_8137893_8138092;chrX_8140127_8140472 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 2.70 2.27 0.00 0.00 0.00 1.52 0.00 2.63 0.00 0.00 0.00 2.13 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA PyK,CG7069,CG18596,I_chr3R_18203637_18203690,I_chr3R_18209085_18209133 chr3R + chr3R_18193391_18194506;chr3R_18193391_18196509;chr3R_18193391_18196485 chr3R_18193391_18194501 chr3R_18193322_18193390 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG3011,I_chrX_5808814_5808922 chrX - chrX_5808814_5810295 chrX_5808813_5808814;chrX_5810295_5810296 chrX_5808714_5808813;chrX_5810296_5810512 0.00 0.00 0.00 3.45 0.00 0.00 0.00 2.56 0.85 0.00 0.00 4.49 7.41 0.00 0.00 0.00 0.00 2.13 1.89 1.67 0.00 5.41 0.00 5.71 7.69 1.82 0.00 0.00 0.00 0.00 0.00 0.00 3.51 2.11 0.00 0.00 2.04 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 6.06 0.00 0.00 1.00 0.00 0.00 0.00 5.41 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA sda,I_chr3R_22742285_22742350,RI_chr3R_22750984_22752737 chr3R + chr3R_22769923_22769989 chr3R_22769923_22769968 chr3R_22769779_22769922;chr3R_22769990_22770999 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 K intron_retention aru,I_chr2L_864795_867505,snoRNA:Me28S-U1230 chr2L - chr2L_864795_864876 chr2L_864794_864795;chr2L_864876_864877 chr2L_864695_864794;chr2L_864877_865060 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.90 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 3.70 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RI_chr3L_9408567_9410728,RpS17,I_chr3L_9422428_9422797,snoRNA:Psi28S-612 chr3L - chr3L_9422426_9422794 chr3L_9422425_9422426;chr3L_9422794_9422795 chr3L_9422328_9422425;chr3L_9422795_9422827 0.09 0.10 0.03 0.07 0.10 0.09 0.14 0.06 0.07 0.15 0.04 0.09 0.06 0.04 0.09 0.13 0.11 0.04 0.04 0.09 0.05 0.23 0.08 0.08 0.07 0.09 0.21 0.55 0.55 0.00 0.18 0.10 0.06 0.11 0.22 0.75 0.08 0.10 0.08 0.08 0.22 0.09 0.09 0.11 0.07 0.25 0.20 0.13 0.14 0.15 0.16 0.00 0.09 0.54 0.09 0.21 0.12 0.12 K intron_retention CG12065,CE_chrX_8469528_8477573 chrX + chrX_8478289_8478488 chrX_8478288_8478289;chrX_8478488_8478489 chrX_8477574_8478288;chrX_8478489_8478608 0.00 0.00 0.00 0.39 0.00 0.00 0.62 0.29 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 2.08 1.71 0.75 0.90 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.69 0.00 0.00 0.00 0.30 0.00 0.00 0.50 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3368,Hmu chr3R + chr3R_23109627_23109679 chr3R_23109626_23109627;chr3R_23109679_23109680 chr3R_23109482_23109626;chr3R_23109680_23111749 1.92 3.39 2.63 9.30 0.00 0.00 3.03 5.00 0.00 0.00 2.63 5.13 0.00 3.03 2.38 2.86 0.00 4.55 0.00 3.49 0.00 1.92 3.03 1.47 4.44 5.88 3.28 19.15 0.00 0.00 4.76 4.08 1.08 0.00 0.00 2.56 0.79 1.39 1.47 3.70 4.08 5.41 5.88 1.64 2.60 0.00 2.86 0.00 4.23 0.00 0.00 4.26 1.41 0.00 1.92 0.00 0.00 0.00 K intron_retention mys,I_chrX_7958795_7961094 chrX + chrX_7958795_7961094 chrX_7958794_7958795;chrX_7961094_7961095 chrX_7958695_7958794;chrX_7961095_7961194 35.25 33.33 50.00 60.00 28.57 50.00 31.25 59.09 46.67 NA 45.45 59.09 30.77 47.06 42.86 47.62 45.45 29.41 52.38 41.67 60.00 4.88 33.33 18.18 NA 61.54 31.82 25.00 NA 41.18 17.65 NA NA 42.86 15.38 41.67 20.00 20.00 16.67 19.05 NA 35.71 37.50 0.00 NA NA NA 37.50 45.16 16.67 18.92 26.67 NA NA 34.78 23.08 NA NA K cassette Eb1,RI_chr2R_2640290_2642206,I_chr2R_2640494_2642206,I_chr2R_2642491_2642549 chr2R + chr2R_2640494_2642206 chr2R_2640494_2640577;chr2R_2641009_2642206 chr2R_2640578_2641008 chr2R_2640394_2640493;chr2R_2642207_2642306 87.50 93.33 63.64 63.33 63.64 63.64 85.19 75.00 91.67 90.00 100.00 90.00 75.00 88.89 92.31 87.50 69.23 90.00 90.91 77.27 85.71 48.89 86.67 90.48 94.44 87.50 87.50 72.22 93.75 88.89 82.61 90.91 70.97 76.47 85.71 82.14 86.36 86.67 90.91 80.00 94.12 81.48 87.50 68.18 90.91 100.00 100.00 84.00 85.71 88.24 87.50 81.82 100.00 90.00 84.62 91.67 90.91 91.67 K intron_retention CG8412,I_chr3R_5583152_5583200 chr3R + chr3R_5582916_5582977 chr3R_5582915_5582916;chr3R_5582977_5582978 chr3R_5582787_5582915;chr3R_5582978_5583151 23.08 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 36.36 16.67 NA NA NA NA 25.00 NA NA NA NA NA NA NA 23.08 NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG9572,E_chrX_20048406_20049371 chrX + chrX_20048848_20049131 chrX_20048847_20048848;chrX_20049131_20049132 chrX_20048231_20048847;chrX_20049132_20049506 0.00 0.00 NA NA NA NA 6.25 NA 5.56 NA NA 0.00 NA NA NA NA 7.69 0.00 NA 6.12 NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA 10.53 NA NA 0.00 0.00 2.38 3.85 NA 5.00 NA 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 NA 0.00 0.00 NA 2.63 0.00 NA N alternative_donor Tpi chr3R - chr3R_25959817_25959972;chr3R_25959817_25959887 chr3R_25959817_25960000 chr3R_25959232_25959816;chr3R_25960001_25960005 3.85 2.08 6.15 5.80 1.72 2.04 4.35 5.45 4.42 9.09 4.76 1.96 4.17 7.55 1.52 1.75 1.82 0.00 0.00 1.60 3.39 5.41 5.56 0.00 NA 1.79 0.00 4.55 7.69 3.85 5.88 7.84 16.00 2.99 3.33 0.00 0.00 0.00 4.76 8.33 2.78 3.23 0.00 3.57 9.72 9.68 0.00 17.02 4.35 3.85 4.55 0.00 6.90 2.70 3.80 4.55 10.71 20.37 K intron_retention Tre1,I_chrX_5569518_5570588 chrX - chrX_5569074_5569144 chrX_5569073_5569074;chrX_5569144_5569145 chrX_5568973_5569073;chrX_5569145_5569290 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.68 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.38 0.37 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD RpL17,I_chrX_6637182_6638207,RI_chrX_6637182_6637528,I_chrX_6637182_6637973,snoRNA:Psi28S-1232 chrX - chrX_6637182_6638178;chrX_6637182_6638228;chrX_6637182_6637982 chrX_6637182_6638141 chrX_6637093_6637181;chrX_6638229_6638235 61.72 66.34 66.99 57.93 70.50 69.90 76.52 63.36 69.74 19.44 78.85 72.13 82.79 70.00 62.93 67.03 71.79 75.00 64.36 66.80 68.13 29.06 66.30 59.26 64.37 77.44 42.53 24.72 53.37 22.30 57.02 15.52 11.28 60.91 39.22 29.90 68.34 66.25 63.83 21.41 17.21 66.10 66.36 28.02 31.10 23.32 57.36 11.97 58.87 39.81 71.43 66.10 19.84 60.00 61.72 53.73 40.45 12.52 K jcn_only_AD Rab-RP4,RI_chrX_5565547_5565601 chrX - chrX_5565547_5565635 chrX_5565547_5565601 chrX_5565447_5565546;chrX_5565636_5565701 0.61 0.00 0.00 0.87 0.00 0.79 0.51 0.00 0.82 0.00 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.00 0.00 0.32 0.00 1.28 2.27 1.52 1.50 0.69 0.51 0.74 1.40 1.06 3.11 1.16 1.56 0.53 1.44 2.29 0.72 0.52 0.89 0.95 0.84 0.42 0.00 0.89 0.59 0.70 0.75 0.29 0.41 0.61 1.03 0.00 0.56 1.83 0.69 0.00 0.00 0.80 K cassette Vha100-1,I_chr3R_24958227_24960770,RI_chr3R_24959152_24959582,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24958227_24959582;chr3R_24958227_24960770 chr3R_24958227_24958993;chr3R_24959152_24959582,chr3R_24959152_24960770 chr3R_24958994_24959151 chr3R_24958127_24958226;chr3R_24960771_24960870 54.55 47.22 56.98 61.63 35.82 40.54 51.43 43.69 43.87 59.02 47.37 38.51 76.92 44.62 51.19 55.43 43.64 40.62 68.52 38.89 48.10 43.68 58.72 52.56 71.74 51.28 59.68 70.67 69.90 57.14 33.07 63.93 57.46 37.50 61.63 55.81 50.84 54.87 54.97 51.90 67.65 49.21 42.42 58.82 50.00 55.45 50.00 61.62 49.30 57.30 54.55 55.84 59.49 54.76 46.07 50.00 56.60 63.83 K intron_retention CG2247 chrX - chrX_11503747_11504234 chrX_11503746_11503747;chrX_11504234_11504235 chrX_11503670_11503746;chrX_11504235_11504388 4.35 8.70 0.00 0.00 5.56 NA 9.09 0.00 8.82 NA 0.00 8.57 NA 4.17 0.00 11.54 0.00 0.00 0.00 12.24 NA 9.09 0.00 0.00 0.00 0.00 0.00 15.38 10.00 0.00 5.26 NA 0.00 6.25 0.00 4.35 12.12 13.04 4.35 3.70 NA 11.11 6.25 4.35 0.00 NA 0.00 NA 8.89 5.56 10.34 0.00 NA NA 4.76 NA NA NA K intron_retention CG10462 chr2L - chr2L_19732469_19732572 chr2L_19732468_19732469;chr2L_19732572_19732573 chr2L_19732184_19732468;chr2L_19732573_19732670 90.91 88.89 87.50 100.00 100.00 87.50 96.08 90.41 95.29 92.31 95.00 92.31 92.68 92.68 87.88 90.67 90.91 84.00 95.45 88.89 89.47 78.79 97.67 90.00 90.48 92.00 92.16 95.45 83.33 82.05 92.68 86.00 90.91 90.79 97.06 90.62 90.00 92.86 95.65 90.00 87.23 89.66 96.43 92.68 85.00 89.55 95.56 85.71 95.59 88.89 89.80 92.86 96.43 97.06 86.49 93.02 91.07 89.41 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2389272_2395659 chrX_2389272_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2392054;chrX_2392149_2392515;chrX_2392665_2393243;chrX_2393712_2395659 chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521;chrX_2392055_2392148;chrX_2392516_2392664;chrX_2393244_2393711 chrX_2389172_2389271;chrX_2395660_2395759 20.00 NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Atpalpha,I_chr3R_16783890_16785070,I_chr3R_16788018_16789830,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16785103_16787936 chr3R_16785102_16785103;chr3R_16787936_16787937 chr3R_16785071_16785102;chr3R_16787937_16788017 3.57 2.00 5.00 3.77 NA 0.00 5.00 2.99 1.74 NA NA 1.35 0.00 4.26 0.00 4.62 4.00 0.00 0.00 1.52 0.00 5.56 5.17 2.63 7.69 5.26 9.38 11.11 13.64 6.45 3.64 NA 7.69 3.51 2.00 0.00 2.78 3.85 6.25 2.74 16.67 4.84 8.57 2.53 13.33 0.00 0.00 9.52 8.77 0.00 0.00 3.57 0.00 2.86 3.77 8.33 0.00 0.00 K jcn_only_AD par-1,I_chr2R_15359242_15360944,I_chr2R_15359251_15359544,I_chr2R_15359251_15360944,I_chr2R_15359658_15359771,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15359242_15360323 chr2R_15359251_15360323 chr2R_15360324_15360436;chr2R_15359151_15359241 6.92 6.05 7.10 10.41 5.95 9.87 7.30 10.20 5.94 3.74 3.70 6.61 13.44 8.98 14.14 6.25 9.84 8.45 9.78 6.45 4.91 4.39 6.76 7.00 6.77 12.88 4.99 2.48 8.54 6.48 12.08 7.91 4.30 7.95 6.04 6.93 6.19 7.55 4.58 0.61 5.66 8.84 4.08 5.45 13.28 7.84 6.03 7.50 6.92 6.08 4.47 4.50 9.09 2.82 7.62 7.58 7.37 8.90 K intron_retention CG14057,EI_chr3L_17037760_17037808 chr3L - chr3L_17037760_17037812 chr3L_17037759_17037760;chr3L_17037812_17037813 chr3L_17037660_17037759;chr3L_17037813_17037908 0.00 0.00 0.00 2.41 0.00 0.00 0.00 0.00 1.35 0.00 3.70 0.83 0.00 0.00 0.00 1.39 0.00 0.00 1.72 0.00 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 4.44 0.85 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 K alternative_acceptor I_chr2R_13433672_13433749,MESR4 chr2R + chr2R_13436468_13436586 chr2R_13436468_13436573 chr2R_13436391_13436467;chr2R_13436587_13438569 93.75 100.00 90.91 90.91 100.00 93.75 72.73 94.12 97.22 93.75 91.67 93.75 84.62 93.75 94.12 93.10 93.33 95.24 94.12 97.87 91.67 95.65 100.00 85.71 94.12 95.24 88.24 76.47 92.86 84.21 87.50 NA 86.96 96.67 89.47 100.00 95.45 84.62 93.75 100.00 NA 96.77 89.47 80.00 87.50 90.91 NA 95.65 96.43 85.71 94.74 92.86 100.00 NA 100.00 NA NA 93.75 K jcn_only_AA Pcf11,RI_chr2R_10753287_10754988 chr2R - chr2R_10753287_10754988;chr2R_10753557_10754988;chr2R_10753581_10754988;chr2R_10753239_10754988 chr2R_10753272_10754988 chr2R_10754989_10755088;chr2R_10753187_10753238 24.52 23.81 7.69 30.30 9.52 23.53 21.21 25.81 27.08 25.00 26.09 21.62 NA 21.74 25.00 NA 21.74 NA 13.33 24.56 NA 21.88 24.49 13.79 NA 30.00 27.03 24.32 12.50 NA 25.93 NA 17.86 22.22 NA NA 16.36 18.18 34.21 36.17 NA 26.53 NA 28.57 NA 33.33 33.33 33.33 27.91 NA 28.57 NA NA NA 21.74 NA NA NA K alternative_acceptor CG6171,I_chr3R_11188806_11188873,CG34404,CG14868 chr3R - chr3R_11188806_11188873 chr3R_11188820_11188873 chr3R_11188874_11188973;chr3R_11188706_11188805 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 97.62 93.75 100.00 97.50 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 96.43 94.74 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 K intron_retention I_chr3L_203620_207231,CG7028,I_chr3L_207277_208117 chr3L - chr3L_207277_208089 chr3L_207276_207277;chr3L_208089_208090 chr3L_207232_207276;chr3L_208090_208317 69.23 68.97 60.87 72.00 69.23 53.33 72.34 81.03 75.51 58.33 76.92 66.67 82.35 75.86 68.00 80.85 58.33 63.16 70.83 68.52 61.54 88.89 60.00 57.69 68.75 61.11 70.97 91.67 73.33 65.00 48.00 61.11 80.00 80.00 86.67 76.92 50.00 61.54 61.54 67.86 87.50 70.59 80.95 71.43 69.57 73.53 60.00 85.19 74.55 61.11 59.26 73.33 70.00 66.67 60.71 64.52 66.67 87.10 K jcn_only_AA CG14235,noncoding_24847,CG18809,noncoding_24848 chrX - chrX_19637712_19638294 chrX_19637740_19638294 chrX_19638295_19638317;chrX_19637634_19637711 100.00 100.00 100.00 98.08 100.00 100.00 100.00 100.00 98.10 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 97.50 NA NA 100.00 100.00 97.78 100.00 100.00 98.63 NA NA 100.00 97.14 100.00 100.00 NA 98.53 100.00 97.22 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 97.22 96.77 100.00 NA K jcn_only_AA l(2)NC136,I_chr2R_1545723_1546024 chr2R - chr2R_1545081_1545147;chr2R_1545003_1545147 chr2R_1545087_1545147 chr2R_1545148_1545722;chr2R_1544877_1545002 97.78 98.08 98.95 99.03 97.52 96.91 97.30 98.21 98.15 97.78 100.00 98.54 99.05 95.19 98.55 97.21 97.67 98.23 98.55 98.03 99.00 97.87 94.35 96.45 98.10 95.00 95.89 85.71 95.38 95.24 99.41 97.83 94.74 97.88 98.88 100.00 98.77 96.67 98.50 97.48 97.50 98.29 100.00 92.92 95.89 97.44 98.25 97.30 97.80 97.95 100.00 96.08 97.73 97.26 97.20 97.35 97.75 96.74 K jcn_only_AD CG17385,I_chr2R_10298790_10298843 chr2R - chr2R_10298790_10298841;chr2R_10298790_10298847 chr2R_10298790_10298843 chr2R_10298690_10298789;chr2R_10298848_10298916 0.00 0.82 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.94 0.00 0.30 0.48 0.00 0.00 0.34 0.55 0.00 0.00 0.00 0.00 0.32 1.18 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.41 0.00 0.22 0.00 0.00 0.20 0.35 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 K alternative_donor CG11658,I_chr3L_11704048_11704107 chr3L - chr3L_11700672_11701507;chr3L_11700672_11701491 chr3L_11700672_11701407 chr3L_11700405_11700671;chr3L_11701508_11701663 14.36 NA NA NA NA 25.00 27.27 NA 33.33 NA 33.33 25.00 16.67 NA NA 10.00 25.00 NA 22.22 9.52 NA NA 20.00 11.11 25.00 NA 8.33 NA 11.11 NA NA NA 12.50 25.00 NA 9.09 NA NA 11.11 12.50 NA 12.50 NA NA NA 7.69 13.33 7.14 15.38 NA 22.22 NA NA NA NA NA NA NA K jcn_only_AD vkg,I_chr2L_5027222_5027297,I_chr2L_5027222_5028118 chr2L - chr2L_5027222_5028118;chr2L_5027222_5027351 chr2L_5027222_5027297 chr2L_5027122_5027221;chr2L_5028119_5028218 9.95 7.39 7.46 10.70 2.94 5.56 11.81 14.66 6.95 11.76 3.69 13.77 13.96 11.33 16.08 6.51 6.83 11.52 9.52 15.10 7.91 18.18 11.29 7.54 9.52 9.62 9.74 5.41 12.00 12.77 6.94 10.68 17.19 10.43 24.64 29.51 3.54 2.26 5.67 10.55 12.70 7.87 10.92 6.12 17.50 13.79 8.22 13.22 12.46 7.75 4.96 9.95 10.45 17.50 8.84 7.78 6.72 7.45 K jcn_only_AD Mi-2 chr3L - chr3L_19881715_19903142 chr3L_19881715_19881800 chr3L_19881638_19881714;chr3L_19903143_19903321 2.70 1.85 1.75 0.00 10.34 3.57 2.82 0.92 3.06 13.16 5.71 4.72 8.57 2.99 3.23 0.95 0.00 5.36 1.75 3.45 0.00 8.11 3.33 4.65 5.36 3.53 0.00 1.33 0.00 5.00 2.74 0.00 1.57 1.10 1.56 4.17 0.00 7.50 1.61 2.80 2.27 1.87 4.00 3.49 0.00 3.45 2.27 0.00 2.40 14.29 3.66 0.00 2.33 2.70 1.33 0.00 6.38 0.00 K alternative_donor CG1667,RI_chr2R_5731409_5731653,I_chr2R_5732410_5732504 chr2R + chr2R_5731907_5731965 chr2R_5731914_5731965 chr2R_5731966_5732034;chr2R_5731846_5731906 97.62 96.43 98.36 98.25 100.00 97.87 100.00 98.59 98.91 94.44 94.74 98.65 100.00 100.00 100.00 98.41 100.00 97.50 97.87 97.35 97.37 90.48 95.24 97.62 100.00 97.56 97.50 100.00 91.67 94.44 85.25 100.00 93.33 98.44 95.65 94.74 100.00 86.96 98.00 100.00 100.00 96.30 100.00 97.78 95.65 97.22 93.55 93.33 98.61 92.11 97.92 100.00 94.12 96.00 97.96 97.37 94.44 94.12 K intron_retention CG2698,I_chr3R_3828169_3828941,I_chr3R_3828880_3828941,I_chr3R_3829483_3829715,I_chr3R_3830586_3830981 chr3R + chr3R_3829483_3829697 chr3R_3829482_3829483;chr3R_3829697_3829698 chr3R_3829383_3829482;chr3R_3829698_3829900 57.14 59.09 57.58 57.78 42.86 57.14 54.35 59.09 67.39 50.00 37.04 53.70 57.14 66.67 50.00 65.91 61.11 63.64 51.28 78.43 51.85 70.83 61.76 58.62 67.86 53.12 31.15 48.00 53.49 55.56 70.73 57.14 95.00 71.79 56.00 67.65 40.00 41.38 44.44 61.36 67.86 53.57 62.96 51.22 53.85 50.00 55.00 65.85 59.65 64.29 56.41 68.97 66.67 56.00 45.71 60.00 56.00 67.65 K jcn_only_AD CG5316 chr3R + chr3R_15229212_15229614 chr3R_15229545_15229614 chr3R_15229615_15229840;chr3R_15229203_15229211 100.00 NA 100.00 100.00 NA 95.45 97.50 100.00 100.00 NA 95.83 100.00 NA 100.00 100.00 97.62 95.24 100.00 100.00 98.28 100.00 NA 100.00 100.00 NA 96.97 100.00 NA NA NA 100.00 NA NA 97.22 NA NA 88.00 95.65 96.88 100.00 NA 100.00 NA NA NA NA 96.30 NA 97.78 100.00 100.00 96.67 100.00 NA 96.88 NA 100.00 100.00 K jcn_only_AA Caki chr3R - chr3R_17615483_17617252 chr3R_17616461_17617252 chr3R_17617253_17617321 0.58 1.50 0.00 3.19 0.74 0.00 0.69 1.76 0.60 0.00 0.00 0.44 0.00 0.98 0.58 0.00 1.80 0.00 0.00 0.00 1.53 2.36 0.89 0.61 0.00 0.00 1.04 0.00 0.71 0.99 0.67 0.00 1.47 0.48 0.00 0.88 0.57 0.95 1.08 0.84 1.90 0.00 0.00 0.00 0.00 1.27 0.56 1.64 0.47 0.75 2.43 0.99 0.00 0.00 0.00 0.00 1.10 0.00 K intron_retention CG6812 chr3L + chr3L_19058484_19058549 chr3L_19058483_19058484;chr3L_19058549_19058550 chr3L_19057945_19058483;chr3L_19058550_19058705 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 2.70 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 2.33 NA NA 0.00 0.00 NA NA NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 3.70 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 K jcn_only_AA msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585739_2586402;chr3L_2585733_2586402 chr3L_2585716_2586402 chr3L_2586403_2586502;chr3L_2585639_2585715 0.00 2.04 0.46 0.00 0.00 1.03 0.84 0.57 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.60 0.49 0.51 0.70 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.54 0.00 0.00 0.00 1.03 0.00 1.24 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 1.64 0.00 0.00 0.71 0.00 0.00 0.67 K intron_retention wech,I_chr2R_3373673_3377000,I_chr2R_3373673_3377045,I_chr2R_3373673_3377324,I_chr2R_3376705_3376837 chr2R - chr2R_3377076_3377150 chr2R_3377075_3377076;chr2R_3377150_3377151 chr2R_3377046_3377075;chr2R_3377151_3377248 0.00 0.00 0.00 47.06 NA 0.00 35.29 5.71 7.50 0.00 0.00 6.67 0.00 0.00 0.00 9.09 NA 0.00 12.50 9.09 5.88 NA 0.00 10.00 NA 14.29 25.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 6.38 NA 0.00 NA 0.00 NA 0.00 0.00 3.70 10.81 NA 0.00 NA 0.00 NA NA NA NA 0.00 N alternative_acceptor CG42394,noncoding_15936,E_chr3R_6675742_6676058 chr3R + chr3R_6677211_6677344;chr3R_6677211_6677262 chr3R_6677211_6677270 chr3R_6677007_6677210;chr3R_6677345_6677430 79.31 77.78 80.33 70.25 94.74 78.85 78.86 73.94 75.52 100.00 82.05 81.36 75.34 78.95 75.47 74.51 75.36 78.05 71.88 81.75 96.88 97.62 76.32 82.69 88.00 67.39 78.43 84.62 92.31 95.24 78.67 75.93 83.67 80.74 75.51 87.10 83.33 70.00 96.67 86.21 74.07 79.65 79.31 77.36 82.14 77.32 83.93 72.55 77.64 75.00 83.33 77.14 86.67 86.27 71.88 79.55 82.95 80.00 K intron_retention RhoGAP18B chrX - chrX_19038625_19040000 chrX_19038624_19038625;chrX_19040000_19040001 chrX_19038597_19038624;chrX_19040001_19040175 0.00 0.00 0.00 7.41 0.00 6.67 8.70 5.71 11.11 NA 0.00 7.69 0.00 NA 0.00 9.09 5.26 4.55 0.00 11.11 6.67 0.00 0.00 0.00 0.00 0.00 4.17 NA 0.00 0.00 13.04 NA 5.88 3.57 5.56 0.00 0.00 0.00 0.00 0.00 NA 3.12 0.00 0.00 0.00 0.00 0.00 0.00 5.26 13.33 0.00 NA 0.00 0.00 10.00 4.76 0.00 0.00 K cassette nompB chr2L - chr2L_21579638_21586399 chr2L_21579638_21581616;chr2L_21581817_21586399 chr2L_21581617_21581816 chr2L_21579621_21579637;chr2L_21586400_21586499 88.89 NA NA 100.00 NA NA 87.50 88.89 88.89 NA NA 90.00 100.00 NA NA 77.78 NA NA NA 88.89 NA NA 83.33 NA NA NA NA NA NA NA 66.67 NA NA 87.50 NA NA NA NA NA 100.00 NA 83.33 NA 100.00 NA NA NA NA 87.50 NA 100.00 NA NA NA NA NA 83.33 100.00 K alternative_acceptor CG18081,I_chr3L_15827984_15828396 chr3L - chr3L_15827980_15828293 chr3L_15827984_15828293 chr3L_15828294_15828459;chr3L_15827948_15827979 87.10 89.19 86.79 90.54 80.56 88.89 89.29 86.05 89.16 95.00 81.58 92.47 89.58 90.91 87.04 89.02 90.91 92.11 91.07 91.86 87.18 92.31 85.94 86.96 96.15 86.00 82.93 80.00 75.86 83.33 85.71 88.89 93.75 88.16 87.10 86.67 83.67 85.11 95.12 87.50 85.71 91.57 82.69 82.98 83.87 86.79 81.82 78.95 92.79 85.11 94.44 91.18 80.36 91.30 80.33 86.00 92.11 85.71 K cassette CG13124,RI_chr2L_9906444_9907607,RI_chr2L_9907784_9908405,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9906444_9907607 chr2L_9906444_9907050;chr2L_9907548_9907607 chr2L_9907051_9907547 chr2L_9906344_9906443;chr2L_9907608_9907707 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.01 100.00 100.00 100.00 99.02 100.00 100.00 100.00 98.95 100.00 100.00 100.00 100.00 100.00 100.00 98.94 100.00 100.00 100.00 100.00 100.00 95.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.85 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 N intron_retention CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1525704_1526333 chr3L_1525703_1525704;chr3L_1526333_1526334 chr3L_1525642_1525703;chr3L_1526334_1526398 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 100.00 NA 100.00 68.42 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 100.00 100.00 100.00 K intron_retention CG8632,CG8646 chr2R + chr2R_8541564_8541630 chr2R_8541563_8541564;chr2R_8541630_8541631 chr2R_8541495_8541563;chr2R_8541631_8541699 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 4.17 NA NA NA 0.00 0.00 0.00 0.00 1.39 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 4.65 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 5.06 0.00 0.00 NA 0.00 0.00 3.23 3.45 1.68 0.00 NA 0.00 0.00 0.00 5.00 0.00 0.00 0.00 1.75 K intron_retention didum,I_chr2R_3393005_3393348 chr2R + chr2R_3393252_3393343 chr2R_3393251_3393252;chr2R_3393343_3393344 chr2R_3393154_3393251;chr2R_3393344_3393524 1.75 0.00 1.85 6.94 0.00 4.76 7.27 6.35 4.08 0.00 3.03 2.44 0.00 4.65 5.66 0.00 0.00 2.04 0.00 6.19 0.00 0.00 0.00 3.51 6.25 10.00 7.69 NA 2.94 0.00 2.08 0.00 0.00 4.17 0.00 0.00 1.82 0.00 4.62 2.38 NA 2.73 0.00 0.00 0.00 0.00 0.00 5.88 4.76 0.00 1.75 0.00 0.00 3.12 0.00 0.00 3.45 0.00 K intron_retention CG10462 chr2L - chr2L_19733070_19733162 chr2L_19733069_19733070;chr2L_19733162_19733163 chr2L_19733001_19733069;chr2L_19733163_19733336 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.73 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 K intron_retention CG9646 chr2R + chr2R_12937681_12937737 chr2R_12937680_12937681;chr2R_12937737_12937738 chr2R_12937514_12937680;chr2R_12937738_12938160 0.00 0.00 2.17 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K intron_retention CG11141,p47,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3348706_3348760 chr2R_3348705_3348706;chr2R_3348760_3348761 chr2R_3347728_3348705;chr2R_3348761_3349848 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention eIF-4a,I_chr2L_5981836_5984010,I_chr2L_5983941_5984010,I_chr2L_5983591_5984010,I_chr2L_5985221_5985289 chr2L + chr2L_5983941_5984010 chr2L_5983940_5983941;chr2L_5984010_5984011 chr2L_5983841_5983940;chr2L_5984011_5984110 36.37 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.09 NA NA NA NA NA 63.64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Hsp83 chr3L + chr3L_3193368_3194498 chr3L_3193367_3193368;chr3L_3194498_3194499 chr3L_3192969_3193367;chr3L_3194499_3197061 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.11 0.00 0.18 0.11 0.00 0.00 0.00 0.00 0.53 0.00 0.13 0.77 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.12 0.00 0.00 0.00 K intron_retention cul-2,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21661466_21661529 chr2L_21661465_21661466;chr2L_21661529_21661530 chr2L_21661348_21661465;chr2L_21661530_21661636 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 3.23 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1962 chr2L - chr2L_20681534_20681618 chr2L_20681533_20681534;chr2L_20681618_20681619 chr2L_20679105_20681533;chr2L_20681619_20681995 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 10.00 NA NA NA 5.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 K intron_retention dgt1,CG7824 chr3R - chr3R_25682556_25682608 chr3R_25682555_25682556;chr3R_25682608_25682609 chr3R_25682489_25682555;chr3R_25682609_25682675 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Hml chr3L + chr3L_13840287_13840350 chr3L_13840287_13840347 chr3L_13840122_13840286;chr3L_13840351_13840740 72.73 72.73 NA 80.95 NA 72.73 87.50 64.29 76.47 NA 90.91 73.08 70.59 50.00 83.33 64.29 87.50 66.67 75.00 78.95 66.67 NA 61.11 NA NA 85.71 91.67 NA NA NA NA NA NA 75.00 NA NA 70.00 NA NA 69.57 NA 70.00 71.43 61.54 NA NA NA 78.57 75.00 NA NA NA NA NA 61.54 NA NA 60.00 K intron_retention l(3)L1231 chr3R - chr3R_10470911_10471017 chr3R_10470910_10470911;chr3R_10471017_10471018 chr3R_10468524_10470910;chr3R_10471018_10471119 38.71 37.74 40.00 52.46 38.00 43.75 48.89 40.91 45.54 44.44 44.44 30.49 38.89 35.71 36.17 52.17 31.91 39.02 42.86 41.38 34.15 78.72 42.17 31.71 50.85 55.56 48.86 58.23 39.68 36.84 45.95 41.67 37.50 35.14 38.71 26.56 43.36 29.51 32.32 33.96 69.57 41.76 37.14 30.65 46.43 29.55 27.66 34.69 27.91 42.11 45.33 30.00 33.33 35.29 35.85 35.48 34.15 29.63 K jcn_only_AA Eno,I_chr2L_1726650_1727645,I_chr2L_1726656_1727485,EI_chr2L_1727403_1727645,I_chr2L_1728229_1728302 chr2L - chr2L_1726656_1727645;chr2L_1726650_1727645;chr2L_1727559_1727645 chr2L_1727403_1727645 chr2L_1727646_1727735;chr2L_1726556_1726649 0.11 0.00 0.00 0.00 0.00 0.20 0.39 0.00 0.28 0.23 1.84 0.10 0.00 0.00 0.00 0.35 0.24 0.97 0.57 0.09 0.95 0.00 0.00 0.16 0.00 0.57 0.16 0.20 0.27 0.20 0.23 0.00 0.25 0.27 0.00 0.00 0.10 0.26 0.07 0.00 0.48 0.00 0.25 0.28 0.22 0.00 0.00 0.00 0.25 0.61 0.11 0.00 0.00 0.00 0.18 0.00 0.25 0.00 K jcn_only_AA I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,cg,I_chr2R_10062078_10063898,I_chr2R_10064197_10068715,I_chr2R_10068194_10068715 chr2R + chr2R_10062078_10063910 chr2R_10062078_10063898 chr2R_10061978_10062077;chr2R_10063911_10063998 0.42 2.11 0.00 0.00 0.00 0.00 0.00 1.20 1.28 1.18 0.00 0.53 0.00 1.09 0.00 1.22 1.41 1.15 0.00 0.37 2.82 0.00 0.38 0.00 0.93 2.38 0.60 0.00 0.96 0.00 0.00 1.15 0.00 0.00 0.00 0.68 0.80 0.00 0.96 0.77 1.96 0.82 0.00 0.00 3.77 0.00 0.93 0.88 0.42 0.00 1.31 1.60 0.96 0.00 0.00 0.00 0.99 0.00 K intron_retention sec24,RI_chr2R_5764938_5764997,I_chr2R_5768722_5769689 chr2R - chr2R_5765096_5765148 chr2R_5765095_5765096;chr2R_5765148_5765149 chr2R_5764998_5765095;chr2R_5765149_5765381 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.15 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 N cassette Dscam,F_chr2R_3219886_3228832,F_chr2R_3226043_3235353,F_chr2R_3227948_3235353,F_chr2R_3228738_3235353,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3219886_3235353 chr2R_3219886_3230087;chr2R_3230387_3235353 chr2R_3230088_3230386 chr2R_3219786_3219885;chr2R_3235354_3235453 100.00 36.36 36.36 16.00 100.00 NA 42.86 31.58 100.00 100.00 NA 100.00 23.08 100.00 100.00 100.00 NA NA 100.00 100.00 NA 16.67 100.00 100.00 NA NA 100.00 100.00 18.18 100.00 100.00 NA 20.00 100.00 100.00 100.00 100.00 NA 100.00 33.33 NA 100.00 NA 100.00 NA NA NA 100.00 55.56 NA 25.00 NA NA NA 38.46 NA NA NA K intron_retention hairy chr3L + chr3L_8670568_8670704 chr3L_8670567_8670568;chr3L_8670704_8670705 chr3L_8670472_8670567;chr3L_8670705_8672361 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive CG32549,RI_chrX_18301919_18303082,I_chrX_18302976_18303916,I_chrX_18303243_18303916 chrX - chrX_18301919_18303082,chrX_18303236_18303916 chrX_18301919_18302550,chrX_18302893_18303916 chrX_18303083_18303235 chrX_18302551_18302892 chrX_18301857_18301918;chrX_18303917_18304016 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA 100.00 K intron_retention c(3)G chr3R - chr3R_11617601_11617655 chr3R_11617600_11617601;chr3R_11617655_11617656 chr3R_11617378_11617600;chr3R_11617656_11618194 0.00 NA NA 7.69 NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 6.90 NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 7.14 NA NA NA NA NA NA NA NA NA NA K intron_retention CG4789,ppk28 chrX + chrX_16695039_16695101 chrX_16695038_16695039;chrX_16695101_16695102 chrX_16694703_16695038;chrX_16695102_16695620 15.60 22.58 12.07 15.91 11.11 10.00 13.21 17.24 10.31 21.74 10.81 13.79 20.00 12.12 7.81 19.35 19.35 7.14 10.81 16.47 13.33 47.06 35.71 29.17 37.04 27.03 47.62 44.00 34.78 3.77 12.07 15.94 4.55 13.24 11.76 18.52 35.90 34.38 26.00 13.43 9.26 15.60 9.30 17.86 5.48 11.86 24.00 3.70 9.18 27.03 34.62 43.75 9.23 32.00 10.42 14.29 19.51 3.55 K intron_retention CG32428 chr3L - chr3L_20466289_20466409 chr3L_20466288_20466289;chr3L_20466409_20466410 chr3L_20465741_20466288;chr3L_20466410_20466416 95.12 100.00 93.75 97.06 100.00 95.65 96.30 100.00 94.44 100.00 100.00 96.67 92.31 86.36 100.00 96.55 100.00 94.74 96.15 93.10 91.67 91.67 94.12 90.91 100.00 85.00 90.91 91.67 100.00 91.67 95.24 100.00 96.30 93.75 94.44 100.00 88.89 NA 92.86 95.24 100.00 97.73 95.00 100.00 88.24 91.67 100.00 85.71 94.29 NA 100.00 92.31 100.00 NA 95.65 94.12 93.33 94.29 K alternative_acceptor I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,cg,I_chr2R_10064197_10068715,I_chr2R_10068194_10068715 chr2R + chr2R_10066547_10066616 chr2R_10066547_10066613 chr2R_10066399_10066546;chr2R_10066617_10066759 42.25 46.73 37.39 41.43 39.08 41.58 37.93 43.26 40.89 36.67 43.02 41.41 50.00 40.00 39.32 45.79 41.89 37.96 40.45 42.75 37.23 44.19 40.11 43.55 44.44 38.82 50.71 46.51 42.28 44.32 38.55 40.83 44.44 39.78 46.05 43.65 43.26 44.44 41.38 42.58 39.39 42.79 43.21 44.17 45.79 44.52 38.32 41.30 42.93 46.49 43.14 42.25 40.62 40.37 36.28 37.27 47.06 41.55 K intron_retention Moca-cyp chr3R + chr3R_24168142_24168200 chr3R_24168141_24168142;chr3R_24168200_24168201 chr3R_24168002_24168141;chr3R_24168201_24168348 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.92 0.00 1.45 0.00 0.00 0.00 3.45 1.67 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Crag,I_chrX_8487355_8487512,I_chrX_8494280_8494352 chrX + chrX_8486625_8487512 chrX_8487355_8487512 chrX_8487513_8487612;chrX_8486279_8486624 2.70 2.70 2.56 5.56 0.00 2.22 6.45 4.76 4.23 0.00 4.00 15.69 9.52 2.94 3.85 10.00 4.35 0.00 7.41 4.17 2.94 6.94 3.57 1.72 1.85 3.23 5.00 7.69 4.55 2.70 2.27 0.00 3.45 4.08 2.13 2.70 1.82 2.70 1.41 1.82 0.00 3.49 3.70 6.67 2.70 2.78 0.00 2.22 1.59 0.00 2.22 0.00 0.00 0.00 2.27 0.00 5.56 0.00 K alternative_acceptor kal-1 chr3R + chr3R_19972025_19972096 chr3R_19972025_19972087 chr3R_19971831_19972024;chr3R_19972097_19972461 98.97 98.53 100.00 97.83 94.44 100.00 98.04 98.53 99.10 100.00 97.44 97.62 100.00 100.00 98.41 98.59 97.67 100.00 100.00 100.00 100.00 100.00 98.86 98.68 96.77 100.00 100.00 97.50 98.48 98.33 98.51 100.00 98.67 97.83 100.00 98.41 100.00 100.00 98.97 100.00 98.65 100.00 100.00 98.33 100.00 99.12 98.63 95.35 98.20 98.18 99.01 100.00 100.00 100.00 98.53 100.00 100.00 98.09 K intron_retention I_chr2R_19265701_19270570,CG3530,CG3520 chr2R - chr2R_19278850_19278912 chr2R_19278849_19278850;chr2R_19278912_19278913 chr2R_19278715_19278849;chr2R_19278913_19279196 0.00 0.00 0.00 7.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 2.22 3.70 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 1.27 3.45 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 K intron_retention tral,I_chr3L_12512171_12512251 chr3L + chr3L_12512171_12512243 chr3L_12512170_12512171;chr3L_12512243_12512244 chr3L_12512071_12512170;chr3L_12512244_12512343 0.00 0.00 0.00 3.70 0.00 1.89 0.00 0.00 1.20 0.00 0.00 0.00 0.00 1.82 0.00 3.77 0.00 0.00 0.00 0.65 0.00 0.68 0.00 0.00 0.00 0.00 0.52 2.17 4.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.50 0.00 1.50 0.00 0.65 0.00 0.49 0.00 0.00 0.00 1.45 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 1.60 0.00 K jcn_only_AA Ndae1,I_chr2L_7231127_7234203,I_chr2L_7231184_7234525,I_chr2L_7231981_7234526,CREI_chr2L_7232646_7232704,I_chr2L_7234342_7234526 chr2L - chr2L_7231127_7234526 chr2L_7231184_7234526 chr2L_7234527_7234625;chr2L_7231095_7231126 100.00 100.00 100.00 100.00 97.30 100.00 94.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.11 100.00 100.00 100.00 100.00 100.00 98.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 98.18 96.00 96.15 95.45 97.30 97.89 100.00 97.83 100.00 96.43 NA 100.00 98.98 NA 100.00 100.00 NA NA 100.00 NA 97.50 100.00 K alternative_acceptor Cap-H2 chr3R + chr3R_6589674_6589832;chr3R_6589674_6589871 chr3R_6589674_6589835 chr3R_6588751_6589673;chr3R_6589872_6590095 57.14 50.00 57.14 45.45 NA 71.43 66.67 57.14 66.67 NA NA 50.00 85.71 75.00 71.43 57.14 55.56 NA 42.86 73.33 57.14 NA 50.00 100.00 NA 85.71 60.00 42.86 NA NA 62.50 NA NA 76.92 NA NA NA NA 62.50 57.14 NA 47.06 NA NA NA NA NA NA 55.56 NA 66.67 NA NA NA 57.14 NA NA NA K intron_retention cul-4 chr2R - chr2R_3991418_3991471 chr2R_3991417_3991418;chr2R_3991471_3991472 chr2R_3991028_3991417;chr2R_3991472_3991608 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K alternative_acceptor CG16952,RI_chrX_15764587_15765393,I_chrX_15766003_15766047 chrX + chrX_15766003_15766062;chrX_15766003_15766047 chrX_15766003_15766068 chrX_15765903_15766002;chrX_15766069_15766147 5.56 0.00 0.00 6.67 12.50 NA 4.55 12.50 0.00 NA 11.11 5.26 7.14 11.11 8.33 5.26 12.50 NA 14.29 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA 7.69 NA NA 14.29 NA NA NA NA NA 0.00 NA 3.85 8.33 0.00 NA NA NA NA 9.09 NA 0.00 NA NA NA 5.56 NA NA NA K alternative_donor trbd chr3R - chr3R_5535271_5536202;chr3R_5535271_5535611 chr3R_5535271_5536695 chr3R_5535110_5535270;chr3R_5536696_5536730 2.63 4.35 11.11 2.63 0.00 8.33 3.03 10.26 5.17 0.00 0.00 4.76 10.00 0.00 0.00 2.94 5.56 15.38 3.85 2.04 0.00 11.11 0.00 0.00 0.00 4.55 0.00 9.09 11.11 0.00 0.00 6.67 5.26 2.70 0.00 0.00 0.00 5.00 0.00 2.86 4.35 4.44 5.56 0.00 0.00 8.33 5.26 3.12 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20341925_20342041;chr3L_20341509_20342041;chr3L_20341865_20342041;chr3L_20341486_20342041;chr3L_20341522_20342041;chr3L_20341751_20342041;chr3L_20341530_20342041;chr3L_20341629_20342041;chr3L_20341598_20342041;chr3L_20341759_20342041 chr3L_20341636_20342041 chr3L_20342042_20342306;chr3L_20341482_20341485 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL27A,E_chr2L_4457411_4457977,I_chr2L_4457510_4457892,snoRNA:Me18S-C1831,I_chr2L_4458058_4458120 chr2L - chr2L_4457510_4457739 chr2L_4457509_4457510;chr2L_4457739_4457740 chr2L_4457412_4457509;chr2L_4457740_4457786 0.10 0.07 0.05 0.12 0.05 0.12 0.10 0.08 0.06 0.18 0.02 0.10 0.09 0.14 0.07 0.13 0.08 0.07 0.06 0.10 0.04 0.30 0.11 0.07 0.08 0.10 0.22 0.44 0.17 0.13 0.10 0.09 0.10 0.07 0.18 0.15 0.11 0.09 0.09 0.11 0.09 0.09 0.08 0.08 0.07 0.10 0.03 0.14 0.13 0.15 0.12 0.10 0.07 0.10 0.07 0.09 0.13 0.10 K alternative_donor CG1354,I_chrX_9672972_9673084 chrX + chrX_9672833_9672900 chrX_9672843_9672900 chrX_9672901_9672946;chrX_9672779_9672832 63.64 57.14 75.86 59.57 70.59 71.43 67.57 67.65 58.73 NA 56.52 68.89 67.86 62.50 63.64 61.11 66.67 65.00 62.50 64.71 63.64 NA 69.23 73.33 90.00 70.83 62.50 75.00 75.00 NA 63.33 NA NA 61.11 NA NA 73.53 45.45 60.00 57.14 NA 59.62 61.90 75.00 76.47 NA 77.78 NA 66.67 69.23 57.14 63.16 60.00 NA 58.33 60.00 61.11 NA K intron_retention CG1622,REI_chrX_13191277_13191339,I_chrX_13191916_13192167,I_chrX_13192409_13192738,EI_chrX_13192857_13192928 chrX + chrX_13191916_13192738 chrX_13191915_13191916;chrX_13192738_13192739 chrX_13191816_13191915;chrX_13192739_13192838 6.21 6.60 6.09 3.82 3.31 4.44 10.24 4.44 5.32 5.21 5.08 8.10 3.53 9.64 7.96 3.25 5.38 9.62 5.10 5.26 5.22 31.65 6.76 6.82 8.44 4.72 7.18 6.21 16.89 5.05 12.65 7.58 4.12 3.12 8.73 14.09 6.36 5.38 6.13 7.56 8.38 4.95 5.06 9.63 6.99 9.83 7.41 9.93 5.47 7.87 9.22 8.33 4.66 5.21 4.69 6.52 3.18 5.75 K intron_retention Gel,I_chr3R_63540_64006,I_chr3R_63962_64024,I_chr3R_66533_66599 chr3R + chr3R_63540_64024 chr3R_63539_63540;chr3R_64024_64025 chr3R_63440_63539;chr3R_64025_64099 0.46 0.22 0.00 0.69 0.00 0.29 1.29 0.42 0.75 0.00 0.00 0.26 0.60 0.51 0.19 0.62 0.00 0.71 0.45 0.23 0.52 3.10 0.46 0.72 1.55 1.81 0.98 1.89 1.85 0.46 0.00 0.00 0.55 0.15 0.00 2.39 0.65 0.72 0.30 1.17 1.98 0.52 0.90 0.44 0.00 0.00 0.47 1.35 0.60 0.00 0.00 2.15 0.00 0.00 0.18 0.38 0.00 0.52 K intron_retention CG1416,I_chr2L_21758100_21758179,I_chr2L_21758143_21758183,I_chr2L_21758143_21758209 chr2L + chr2L_21758100_21758179 chr2L_21758099_21758100;chr2L_21758179_21758180 chr2L_21758043_21758099;chr2L_21758180_21758279 99.22 99.09 99.16 99.34 98.78 98.96 98.92 99.54 99.28 100.00 98.99 99.57 100.00 100.00 99.27 99.61 98.92 99.07 100.00 99.67 100.00 100.00 99.28 99.16 100.00 98.52 99.28 100.00 100.00 99.03 99.27 98.95 99.15 99.45 99.12 100.00 96.46 98.65 98.31 98.67 100.00 99.57 100.00 99.08 99.19 99.36 97.64 99.22 99.60 99.21 99.15 98.97 97.44 99.13 98.50 99.20 99.47 100.00 K intron_retention CG31211 chr3R + chr3R_7776734_7776971 chr3R_7776733_7776734;chr3R_7776971_7776972 chr3R_7776580_7776733;chr3R_7776972_7777214 34.62 38.00 36.17 45.00 27.27 40.00 47.37 31.43 39.25 34.78 22.45 40.00 38.30 43.59 41.86 54.39 34.29 37.21 44.83 34.58 25.00 23.64 32.61 39.13 37.78 41.18 29.31 34.62 8.33 32.81 47.92 29.03 38.60 47.30 32.65 42.86 23.46 27.78 27.17 28.99 40.54 41.25 55.56 30.36 17.95 31.58 23.53 42.86 46.15 17.46 32.56 33.96 22.45 24.07 39.58 28.00 32.81 56.52 K intron_retention shep,I_chr3L_5157070_5160067,RI_chr3L_5163541_5194164,I_chr3L_5177084_5177314,I_chr3L_5193467_5212049 chr3L - chr3L_5157076_5160034 chr3L_5157075_5157076;chr3L_5160034_5160035 chr3L_5156934_5157075;chr3L_5160035_5160051 5.56 3.08 4.82 3.91 5.26 8.22 18.85 6.62 6.76 1.82 11.24 4.07 8.54 0.00 6.90 8.57 5.26 0.00 10.64 8.59 11.11 9.33 6.82 3.95 3.70 8.99 3.26 11.86 3.70 5.56 7.69 10.81 8.22 8.26 5.26 1.92 4.60 3.64 6.56 6.31 8.82 7.09 5.08 1.69 2.78 7.32 0.00 55.56 6.75 9.30 4.76 2.13 0.00 0.00 3.74 0.00 6.12 5.56 K jcn_only_AD CG12428,I_chr3R_23531574_23532266 chr3R - chr3R_23531574_23532276;chr3R_23531574_23531981 chr3R_23531574_23531786 chr3R_23531474_23531573;chr3R_23532277_23532366 0.00 NA NA 0.00 NA NA 0.00 4.55 0.00 NA NA NA NA NA NA NA NA NA NA 2.63 NA 0.00 0.00 NA NA NA NA NA NA 5.00 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA K intron_retention CG8121,RI_chr3R_5183458_5183705 chr3R + chr3R_5161752_5161879 chr3R_5161751_5161752;chr3R_5161879_5161880 chr3R_5161622_5161751;chr3R_5161880_5161974 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 1.30 NA 0.00 3.77 0.00 0.00 5.13 1.75 0.00 0.00 2.38 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Cirl,R_chr2R_4502755_4503407 chr2R + chr2R_4510322_4510375 chr2R_4510321_4510322;chr2R_4510375_4510376 chr2R_4508698_4510321;chr2R_4510376_4510482 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.51 100.00 100.00 100.00 K intron_retention CG3632,RI_chrX_16195880_16196242 chrX + chrX_16196446_16196939 chrX_16196445_16196446;chrX_16196939_16196940 chrX_16196243_16196445;chrX_16196940_16197282 6.90 0.00 8.70 9.09 11.76 14.29 14.29 5.71 7.69 NA 12.50 11.11 12.50 10.71 0.00 17.14 0.00 9.52 6.90 6.06 6.67 13.33 8.70 0.00 NA 9.38 6.90 0.00 13.64 0.00 8.33 14.29 13.33 7.50 4.76 NA 0.00 NA 0.00 5.26 6.67 5.56 0.00 4.35 0.00 7.14 16.67 22.22 4.88 6.25 5.71 0.00 9.09 0.00 3.23 6.90 0.00 10.71 K intron_retention smi35A,E_chr2L_14222082_14233578,E_chr2L_14222082_14233893,RI_chr2L_14233579_14233647 chr2L - chr2L_14233579_14233647 chr2L_14233578_14233579;chr2L_14233647_14233648 chr2L_14233479_14233578;chr2L_14233648_14233678 81.25 NA NA NA NA NA 53.33 80.00 72.22 NA NA NA 87.50 80.00 NA 81.82 NA NA 87.50 91.67 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 78.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 81.25 NA NA NA NA NA NA NA NA NA K alternative_donor CG32000,RI_chr4_153025_153811,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157794_157864 chr4 + chr4_153025_153811;chr4_152998_153811 chr4_152914_153811 chr4_153812_153855;chr4_152891_152913 82.16 NA 87.50 61.11 NA 75.00 86.05 82.50 88.64 NA NA 78.95 57.14 81.82 NA 73.47 NA NA 81.82 83.78 NA NA NA NA NA NA NA NA 72.73 81.82 NA 91.67 92.59 80.95 NA NA NA NA NA 80.00 NA 86.96 85.71 NA 75.00 NA NA 85.71 87.50 NA NA NA NA NA NA NA NA 86.36 K jcn_only_AD CG1578,RI_chrX_11709573_11709680,I_chrX_11709573_11710263,RI_chrX_11709573_11710335,noncoding_23225,I_chrX_11710380_11710454 chrX - chrX_11709573_11709680;chrX_11709573_11710335;chrX_11709573_11710454;chrX_11709573_11710263 chrX_11709573_11710458 chrX_11709473_11709572;chrX_11710459_11710479 7.50 NA NA NA NA NA NA NA 7.50 NA NA 3.57 NA NA NA NA NA NA NA 4.76 NA NA 3.45 13.79 NA NA NA NA NA NA 14.29 NA NA NA NA NA 8.57 NA 0.00 6.67 NA 14.81 NA 3.70 NA NA NA 4.17 13.33 NA NA NA NA NA 12.90 NA 10.00 NA K jcn_only_AA CG10959,I_chrX_8043524_8043577,I_chrX_8043625_8043682 chrX + chrX_8043510_8043583 chrX_8043510_8043577 chrX_8043424_8043509;chrX_8043584_8043624 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 96.67 NA NA NA NA NA NA 90.91 NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA 94.87 K intron_retention CG6006 chr3R + chr3R_11994430_11995416 chr3R_11994429_11994430;chr3R_11995416_11995417 chr3R_11994138_11994429;chr3R_11995417_11995743 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 NA K alternative_donor ari-1,I_chrX_18026911_18026975 chrX - chrX_18026911_18026992 chrX_18026911_18026975 chrX_18026811_18026910;chrX_18026993_18027075 0.00 2.70 0.00 0.00 2.22 3.23 2.90 0.00 2.80 0.00 3.23 4.48 4.00 2.44 2.50 0.00 0.00 0.00 0.00 0.99 3.70 0.00 0.00 0.00 0.00 2.56 0.00 4.55 7.41 0.00 2.04 NA 0.00 1.89 0.00 0.00 0.00 3.57 0.00 3.57 0.00 0.00 0.00 0.00 0.00 3.57 0.00 2.50 1.47 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA mRpS10,CG34316 chr3R + chr3R_11055463_11055522 chr3R_11055463_11055508 chr3R_11055424_11055462;chr3R_11055523_11055749 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 3.45 0.00 2.33 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 3.23 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 NA 0.00 0.00 0.00 0.00 K alternative_donor Itp-r83A,RI_chr3R_1358495_1358578 chr3R + chr3R_1358029_1358578 chr3R_1358495_1358578 chr3R_1358579_1358678;chr3R_1357382_1358028 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 NA 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 7.14 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 NA 0.00 0.00 2.56 NA 0.00 0.00 5.56 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 NA K intron_retention CG3792,CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4977686_4977747 chr2L_4977685_4977686;chr2L_4977747_4977748 chr2L_4977202_4977685;chr2L_4977748_4978568 1.47 1.54 2.30 1.23 0.00 0.00 1.63 0.67 2.30 0.00 1.82 3.36 0.00 0.00 1.23 6.80 0.00 0.00 4.82 4.64 2.99 2.27 1.64 2.63 0.00 0.00 5.26 2.78 0.00 6.45 2.22 12.00 3.33 2.40 0.00 0.00 1.47 3.57 0.00 5.26 0.00 4.48 0.00 0.00 6.67 1.59 0.00 0.00 3.54 5.56 1.37 0.00 0.00 0.00 0.00 0.00 0.00 2.94 K intron_retention CG8334,I_chr3L_19870731_19870822 chr3L + chr3L_19870674_19871932 chr3L_19870673_19870674;chr3L_19871932_19871933 chr3L_19870631_19870673;chr3L_19871933_19872579 45.45 59.09 40.00 48.15 61.11 52.63 55.00 52.94 53.33 38.46 42.86 41.67 66.67 54.55 42.42 52.78 68.42 43.33 55.56 34.92 27.78 35.71 39.29 45.45 40.91 53.85 58.82 69.23 29.03 36.67 30.56 50.00 48.57 45.45 53.33 45.16 51.72 42.86 61.29 45.10 40.00 45.76 36.84 22.73 58.82 45.45 NA 32.65 47.17 NA 45.45 40.00 23.81 NA 56.52 50.00 36.84 20.93 K intron_retention Cyp4e2,Cyp4e1 chr2R + chr2R_4333389_4333446 chr2R_4333388_4333389;chr2R_4333446_4333447 chr2R_4333039_4333388;chr2R_4333447_4333816 1.61 0.00 1.08 4.44 7.55 2.56 1.71 2.94 2.45 0.00 0.00 0.78 3.17 3.39 2.25 0.98 0.00 0.00 2.41 2.94 0.00 1.59 0.86 1.18 1.67 3.28 4.11 4.26 2.48 0.00 3.77 0.00 1.94 1.72 1.23 0.00 2.13 0.00 1.09 2.45 0.83 4.48 1.61 0.00 1.57 1.01 4.29 0.46 3.10 4.30 0.99 0.00 0.00 2.67 4.76 0.94 3.17 0.00 K intron_retention zip,I_chr2R_20878796_20879147 chr2R - chr2R_20898140_20898834 chr2R_20898139_20898140;chr2R_20898834_20898835 chr2R_20897903_20898139;chr2R_20898835_20898892 4.26 2.04 3.85 5.00 5.00 5.17 3.08 6.93 2.88 0.00 6.90 4.08 6.06 3.77 5.56 5.45 7.32 8.57 4.17 3.23 5.56 6.25 2.15 3.17 5.88 5.36 6.94 4.26 2.82 4.94 6.56 4.55 6.15 4.39 1.61 6.25 4.62 6.12 0.00 2.54 3.77 5.05 8.16 5.00 10.53 1.47 0.00 2.23 2.44 0.00 4.17 0.00 2.94 2.56 4.11 2.78 6.25 4.00 K alternative_acceptor CG4133 chr2L + chr2L_457563_457627 chr2L_457563_457614 chr2L_457400_457562;chr2L_457628_458727 7.14 5.88 7.27 9.52 4.44 6.12 4.29 7.04 7.21 5.77 12.20 5.26 5.71 5.26 7.04 10.81 5.88 9.23 7.32 7.80 5.56 9.92 11.61 8.14 5.08 7.14 9.89 13.11 9.86 5.88 11.76 7.14 10.58 8.82 8.77 4.30 9.26 8.96 11.83 6.10 5.15 8.08 4.65 8.54 8.26 7.14 10.13 6.43 8.26 5.50 7.00 5.88 8.82 5.32 5.88 5.75 6.19 7.10 K alternative_acceptor cul-2,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21661637_21662083 chr2L_21661637_21661945 chr2L_21661537_21661636;chr2L_21662084_21662183 0.00 0.00 0.00 1.19 0.00 0.00 1.69 0.88 0.79 0.00 0.00 1.16 4.65 2.13 0.00 2.11 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 3.37 2.67 0.00 0.00 0.00 0.00 0.00 0.00 2.94 1.69 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 1.54 2.70 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention F_chr2L_15260838_15261717,cul-3 chr2L - chr2L_15266735_15266795 chr2L_15266734_15266735;chr2L_15266795_15266796 chr2L_15266596_15266734;chr2L_15266796_15267019 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 N cassette unc-13,I_chr4_904268_919018,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_906518_919018 chr4_906518_907590;chr4_913467_919018 chr4_907591_913466 chr4_906418_906517;chr4_919019_919102 15.15 11.11 22.22 32.79 16.67 16.67 29.20 22.73 17.05 13.64 25.00 19.72 13.64 20.00 15.79 19.61 15.62 9.09 16.28 14.93 15.38 13.59 9.46 10.00 12.07 15.22 15.28 23.40 10.87 15.15 10.61 13.33 16.67 16.92 15.00 15.94 8.82 9.09 6.67 19.05 16.67 16.92 26.09 9.72 7.69 8.11 6.45 20.00 15.49 7.41 11.32 10.34 7.69 4.76 17.65 3.45 2.78 12.50 K intron_retention Syx16,RI_chrX_20264319_20264376 chrX - chrX_20264319_20264380 chrX_20264318_20264319;chrX_20264380_20264381 chrX_20264219_20264318;chrX_20264381_20264476 2.22 0.00 0.00 0.00 0.00 0.00 3.57 1.52 3.06 0.00 0.00 1.06 0.00 0.00 6.90 26.83 0.00 2.00 0.00 3.12 0.00 7.04 7.04 2.44 0.00 0.00 9.84 7.27 2.22 3.28 0.00 5.88 9.18 0.00 3.51 8.77 2.48 0.00 4.12 6.36 4.88 0.00 0.00 1.47 3.28 5.21 1.72 2.30 3.03 8.75 0.00 0.00 0.00 4.17 0.00 2.70 3.03 4.12 K intron_retention CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8182451_8183188 chr2L_8182450_8182451;chr2L_8183188_8183189 chr2L_8182351_8182450;chr2L_8183189_8183563 10.53 11.25 10.71 9.69 9.29 7.50 34.15 7.02 11.01 8.00 19.82 5.88 17.29 12.50 9.14 7.63 11.30 9.29 13.22 11.07 13.18 27.93 11.29 9.35 30.34 53.93 15.49 6.32 6.82 7.55 8.19 10.53 7.87 14.23 11.03 21.35 7.80 11.11 9.39 7.11 18.84 12.73 9.70 7.53 5.88 8.48 13.00 4.85 10.86 11.57 10.92 14.02 7.69 9.38 9.74 12.38 9.92 4.05 K intron_retention CG8709,I_chr2R_4027128_4027182,RI_chr2R_4029534_4029599,I_chr2R_4030580_4030746,I_chr2R_4035901_4043493 chr2R - chr2R_4029326_4029395 chr2R_4029325_4029326;chr2R_4029395_4029396 chr2R_4028186_4029325;chr2R_4029396_4029533 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.94 0.00 3.45 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL10Ab chr3L + chr3L_11816530_11816757 chr3L_11816529_11816530;chr3L_11816757_11816758 chr3L_11816461_11816529;chr3L_11816758_11817314 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.55 100.00 100.00 K intron_retention Adf1,CG15908_CG9410 chr2R + chr2R_2550263_2554224 chr2R_2550262_2550263;chr2R_2554224_2554225 chr2R_2550130_2550262;chr2R_2554225_2554518 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Bj1 chr3L - chr3L_5925418_5925505 chr3L_5925417_5925418;chr3L_5925505_5925506 chr3L_5924718_5925417;chr3L_5925506_5925564 1.96 2.86 1.47 3.92 0.00 3.03 2.17 3.54 1.16 3.03 0.00 2.90 0.00 2.78 2.25 0.00 0.00 2.17 2.44 2.30 0.00 0.00 2.30 1.96 1.72 2.33 5.26 16.67 12.20 2.17 0.00 3.33 1.35 1.80 0.00 0.00 1.52 3.57 0.00 3.62 0.00 2.04 0.00 0.00 0.00 5.80 0.00 3.90 1.28 4.62 2.33 0.00 0.00 0.00 2.06 0.00 0.00 3.51 K intron_retention trio,I_chr3L_999683_1009321 chr3L - chr3L_999543_999616 chr3L_999542_999543;chr3L_999616_999617 chr3L_999447_999542;chr3L_999617_999682 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.88 0.47 0.32 0.00 1.15 1.22 1.97 1.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor cnn,I_chr2R_9333096_9336723,I_chr2R_9333096_9336812,RI_chr2R_9334834_9336719,I_chr2R_9347031_9370659 chr2R - chr2R_9334834_9336723;chr2R_9334834_9336812;chr2R_9334834_9336719 chr2R_9334834_9336501 chr2R_9334744_9334833;chr2R_9336813_9336819 66.67 76.92 80.00 67.86 77.78 72.73 70.73 67.74 77.08 63.16 53.33 60.53 57.14 76.47 61.54 78.79 50.00 85.71 77.78 53.33 58.33 56.76 73.53 61.11 68.42 70.00 67.65 74.29 71.79 69.70 60.87 72.73 68.42 65.62 61.54 48.15 70.37 54.55 69.23 60.87 66.67 60.00 61.54 70.45 63.64 53.85 50.00 80.00 75.00 55.56 91.30 64.71 75.00 66.67 47.37 66.67 50.00 63.16 K alternative_donor Baldspot,I_chr3L_16644636_16654570,I_chr3L_16652567_16652897,I_chr3L_16652567_16654296,RI_chr3L_16652567_16654506,RI_chr3L_16652567_16654512 chr3L - chr3L_16652567_16654570 chr3L_16652567_16654510 chr3L_16652467_16652566;chr3L_16654571_16654606 4.00 4.31 3.46 5.39 3.21 3.70 5.02 8.23 3.90 5.66 2.74 3.85 5.97 3.62 3.33 2.45 5.67 2.48 5.13 4.98 2.31 1.15 3.70 3.68 4.44 6.03 5.81 2.24 5.41 3.96 3.87 5.75 3.34 4.74 3.30 6.51 5.16 3.38 4.17 2.77 4.00 4.37 5.66 4.83 4.30 3.97 2.24 6.13 4.45 1.87 4.03 5.05 3.85 5.04 4.40 3.97 1.83 3.56 K jcn_only_AA CG17508,RI_chr2R_1496995_1497120,chr2R_1497138_1497448.0 chr2R + chr2R_1496995_1497120;chr2R_1496995_1497637 chr2R_1496995_1497568 chr2R_1496895_1496994;chr2R_1497638_1497761 98.39 96.55 100.00 98.99 94.92 98.15 98.08 97.87 98.10 100.00 98.28 97.25 97.87 98.72 98.78 98.48 97.67 100.00 100.00 98.64 98.44 94.37 100.00 97.22 94.87 100.00 97.06 100.00 97.06 98.41 100.00 100.00 92.75 98.15 95.83 100.00 95.92 97.37 98.04 99.05 97.37 98.54 98.57 98.39 96.36 98.75 95.06 98.15 98.73 96.36 100.00 100.00 100.00 90.38 98.94 95.52 98.94 98.41 K cassette CG8312 chr3R + chr3R_5417908_5447240 chr3R_5417908_5433634;chr3R_5433697_5447240 chr3R_5433635_5433696 chr3R_5417040_5417907;chr3R_5447241_5448139 93.75 100.00 85.71 100.00 NA NA 84.62 88.24 87.50 NA 100.00 100.00 NA 100.00 90.00 100.00 100.00 100.00 100.00 100.00 90.00 NA 85.71 100.00 NA NA NA NA NA NA 100.00 NA 100.00 94.44 85.71 71.43 NA NA 100.00 91.67 NA 90.00 NA 83.33 NA 87.50 NA 88.89 93.75 NA 85.71 NA NA NA 100.00 NA NA 75.00 K intron_retention CG5447 chr3R + chr3R_22278745_22278810 chr3R_22278744_22278745;chr3R_22278810_22278811 chr3R_22278576_22278744;chr3R_22278811_22278963 0.00 2.13 0.00 2.74 0.00 0.00 1.82 0.00 1.14 3.12 3.92 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 2.08 1.96 2.11 0.00 0.00 4.55 3.03 0.00 0.00 1.67 0.00 2.78 2.94 0.00 0.00 0.00 0.00 2.50 0.00 0.00 2.97 0.00 0.00 1.54 0.00 1.54 0.00 1.09 0.00 0.00 0.00 1.92 0.00 0.00 3.08 2.11 2.44 K intron_retention Ect4,I_chr3L_8075556_8086158,C_chr3L_8091754_8101552,I_chr3L_8091826_8092243,I_chr3L_8098397_8101385,I_chr3L_8098758_8101738,I_chr3L_8100030_8101385 chr3L + chr3L_8095662_8095992 chr3L_8095661_8095662;chr3L_8095992_8095993 chr3L_8095655_8095661;chr3L_8095993_8097918 30.00 NA NA 30.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 19.35 NA NA NA NA NA 46.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor l(2)05714,RI_chr2L_4970785_4971075,CRE_chr2L_4970785_4971082,I_chr2L_4970785_4973718,RI_chr2L_4971343_4973718 chr2L - chr2L_4970785_4971086;chr2L_4970785_4973718 chr2L_4970785_4971053 chr2L_4970685_4970784;chr2L_4973719_4973787 0.00 0.00 20.00 0.00 0.00 20.00 0.00 0.00 12.50 0.00 0.00 12.50 0.00 0.00 0.00 0.00 33.33 20.00 0.00 7.69 0.00 16.67 0.00 0.00 0.00 0.00 0.00 0.00 20.00 16.67 0.00 25.00 10.00 16.67 0.00 16.67 0.00 20.00 0.00 25.00 14.29 12.50 0.00 20.00 11.11 14.29 0.00 14.29 14.29 12.50 16.67 0.00 0.00 0.00 25.00 16.67 0.00 7.14 K intron_retention dbr,RI_chr2L_74573_75077 chr2L + chr2L_70550_70606 chr2L_70549_70550;chr2L_70606_70607 chr2L_68085_70549;chr2L_70607_71323 0.00 NA NA 5.88 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA 14.29 0.00 NA NA NA 0.00 NA 0.00 NA 0.00 NA 0.00 NA 11.76 0.00 NA 4.00 10.53 NA NA NA NA 0.00 0.00 NA NA K intron_retention Ef1gamma,E_chr3R_25046218_25047549 chr3R + chr3R_25046827_25046994 chr3R_25046826_25046827;chr3R_25046994_25046995 chr3R_25046365_25046826;chr3R_25046995_25047835 100.00 99.95 99.94 99.96 99.93 100.00 99.94 99.96 99.97 100.00 100.00 99.97 100.00 100.00 99.95 100.00 99.93 99.94 99.93 100.00 100.00 99.96 100.00 100.00 100.00 99.94 100.00 100.00 100.00 100.00 100.00 100.00 99.97 100.00 99.93 99.94 100.00 100.00 99.97 99.96 99.95 100.00 100.00 99.95 99.97 100.00 100.00 99.96 100.00 100.00 99.96 100.00 99.95 99.95 100.00 99.96 100.00 99.96 K alternative_donor CG4699 chr3R + chr3R_11619752_11620550;chr3R_11619570_11620550;chr3R_11619776_11620550;chr3R_11619676_11620550 chr3R_11619772_11620550 chr3R_11620551_11621301;chr3R_11619539_11619569 3.45 5.56 4.00 2.38 0.00 11.11 3.12 0.00 2.22 30.00 5.26 2.22 0.00 4.55 3.45 6.12 0.00 0.00 7.41 8.16 0.00 0.00 9.09 9.52 13.33 6.45 0.00 6.25 7.14 5.56 9.09 0.00 0.00 5.00 0.00 0.00 15.79 0.00 0.00 0.00 0.00 10.26 3.85 5.88 0.00 0.00 7.14 7.41 1.96 7.69 3.70 5.26 0.00 0.00 0.00 0.00 0.00 8.33 K alternative_last_exon MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17399683_17403481,chr2R_17399683_17403392,chr2R_17399683_17401733,chr2R_17399683_17401713;chr2R_17399683_17401021 chr2R_17399683_17399897 chr2R_17401022_17401310 chr2R_17399898_17400225 chr2R_17399598_17399682 29.79 21.82 25.49 46.25 16.67 16.33 65.75 54.17 32.29 25.00 53.66 55.26 41.38 27.50 28.00 40.91 45.16 41.18 38.89 34.31 34.29 25.00 18.82 23.94 27.45 35.42 29.31 33.73 43.10 29.03 27.12 31.75 36.47 35.53 30.61 28.81 15.48 18.87 17.81 27.62 47.22 27.85 37.14 34.92 32.93 33.71 22.08 41.18 26.92 36.62 16.30 26.83 18.03 24.56 29.79 20.51 23.21 35.79 K cassette Dap160,I_chr2L_21139943_21140007 chr2L - chr2L_21138031_21138711 chr2L_21138031_21138112;chr2L_21138362_21138711 chr2L_21138113_21138361 chr2L_21137757_21138030;chr2L_21138712_21139602 87.10 93.33 86.67 59.02 87.10 91.67 83.02 78.18 87.37 87.27 84.62 94.67 88.89 83.78 82.98 97.50 86.84 76.74 89.74 85.19 82.05 88.12 85.26 93.26 86.79 81.82 86.96 98.11 84.06 86.67 77.08 85.48 88.17 92.86 94.55 69.57 89.19 93.33 88.89 95.33 88.71 90.00 96.43 90.54 90.00 88.89 88.89 89.66 85.00 81.82 85.00 86.67 86.36 88.71 83.02 83.10 89.87 80.36 K alternative_acceptor CG8531,RI_chr2R_10144869_10144912 chr2R + chr2R_10144869_10144925 chr2R_10144869_10144912 chr2R_10144769_10144868;chr2R_10144926_10145012 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.58 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 1.22 0.00 0.00 1.03 0.00 0.00 0.83 2.61 0.59 0.00 0.62 0.63 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.57 0.43 1.88 0.46 0.00 0.00 0.55 0.48 0.00 0.45 0.60 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 K intron_retention Dcp2,F_chr3L_15815909_15816023,F_chr3L_15817090_15817547 chr3L - chr3L_15815909_15816062 chr3L_15815908_15815909;chr3L_15816062_15816063 chr3L_15815809_15815908;chr3L_15816063_15816123 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 1.11 1.89 12.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG33144,I_chr2R_6628662_6628748,I_chr2R_6654056_6669824 chr2R - chr2R_6628692_6628748 chr2R_6628691_6628692;chr2R_6628748_6628749 chr2R_6627593_6628691;chr2R_6628749_6628848 0.00 0.00 0.00 0.00 0.00 0.00 6.78 0.00 2.94 6.90 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 9.76 0.00 13.85 0.00 0.00 0.00 4.00 7.50 25.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 K jcn_only_AA Phax,RI_chr2R_5006333_5006392 chr2R + chr2R_5002689_5002743 chr2R_5002689_5002734 chr2R_5001956_5002688;chr2R_5002744_5002835 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 3.33 3.85 0.00 0.00 4.00 0.00 0.00 5.00 0.00 0.00 1.80 3.12 0.00 1.64 2.56 0.00 2.17 0.00 NA 2.63 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 3.70 0.00 0.00 0.00 0.00 3.17 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 K alternative_donor I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17183481_17200781,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,RI_chr3R_17189607_17189988 chr3R - chr3R_17189607_17200781 chr3R_17189607_17189988 chr3R_17189507_17189606;chr3R_17200782_17200881 8.33 12.50 0.00 16.67 0.00 0.00 9.09 12.50 10.00 0.00 0.00 9.09 0.00 0.00 0.00 25.00 25.00 0.00 0.00 9.09 0.00 16.67 10.00 20.00 0.00 0.00 0.00 25.00 10.00 0.00 50.00 11.11 12.50 12.50 0.00 0.00 7.69 0.00 14.29 7.14 0.00 6.67 0.00 25.00 10.00 10.00 16.67 8.33 16.67 7.69 12.50 0.00 0.00 0.00 11.11 10.00 14.29 7.69 K alternative_donor CG9669,RI_chr3L_16837963_16838041,RI_chr3L_16837988_16838041 chr3L - chr3L_16837963_16838041 chr3L_16837963_16838019 chr3L_16837888_16837962;chr3L_16838042_16838062 77.78 76.67 70.37 81.25 62.50 61.90 78.95 79.63 78.87 77.78 87.50 88.64 80.00 73.33 76.92 80.49 79.31 77.78 90.62 81.82 69.57 NA 86.67 77.27 70.00 70.83 82.76 76.19 70.00 92.31 81.08 80.65 83.33 76.92 81.25 90.00 66.67 60.00 66.67 73.08 77.14 76.19 78.95 82.14 82.05 83.72 65.22 71.43 76.92 75.86 78.95 79.17 83.33 76.92 75.76 75.76 71.15 82.81 K intron_retention MEP-1,CG42245,noncoding_10195,CG1143 chr3L + chr3L_2632467_2633537 chr3L_2632466_2632467;chr3L_2633537_2633538 chr3L_2632440_2632466;chr3L_2633538_2633809 11.65 NA NA 0.00 NA NA 14.29 12.50 9.09 NA NA 11.54 14.29 9.52 NA 13.33 NA NA 10.53 6.67 NA 29.03 7.14 9.09 15.00 20.00 15.00 0.00 15.38 3.85 10.00 NA 22.22 8.33 NA 0.00 15.00 14.29 6.67 9.09 NA 15.38 18.75 8.33 NA 14.29 15.38 20.00 8.33 17.65 6.45 5.26 NA NA 11.76 NA NA NA K intron_retention T-cp1 chr3R - chr3R_18316744_18316980 chr3R_18316743_18316744;chr3R_18316980_18316981 chr3R_18316590_18316743;chr3R_18316981_18317073 0.00 0.00 0.97 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.25 0.00 2.78 0.28 0.71 0.00 0.00 0.00 0.00 3.20 0.00 0.00 0.00 0.37 0.00 0.83 0.66 0.00 0.00 0.57 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 0.66 0.00 0.00 0.00 0.52 0.63 0.00 0.00 K alternative_acceptor RpL11,I_chr2R_15330246_15330292,I_chr2R_15330603_15330817 chr2R + chr2R_15329995_15330122 chr2R_15329995_15330086 chr2R_15329948_15329994;chr2R_15330123_15330245 0.16 0.14 0.72 0.12 0.00 0.48 1.24 0.11 0.14 0.22 0.69 0.12 1.01 0.56 0.91 0.21 1.95 1.02 2.00 0.08 0.61 0.06 0.11 0.14 0.32 2.53 0.39 0.23 0.41 0.38 2.51 0.15 0.14 0.12 0.07 0.64 0.06 0.10 0.11 0.17 0.61 0.14 0.00 0.20 0.07 0.13 0.14 0.16 0.25 0.25 0.14 0.19 0.10 0.07 0.32 0.14 0.07 0.09 K jcn_only_AA endoB chr2R - chr2R_15196319_15196897 chr2R_15196737_15196897 chr2R_15196898_15197088 2.78 1.16 3.41 8.45 0.00 0.00 10.17 1.30 2.80 6.67 2.17 5.15 4.00 1.85 3.66 6.58 4.35 1.06 0.00 5.21 3.70 0.00 0.93 1.64 0.00 5.10 3.61 8.33 4.35 0.91 1.64 2.90 1.55 2.20 0.00 2.48 2.72 4.17 6.40 1.68 4.65 1.45 4.76 3.08 4.46 2.30 5.13 4.72 3.31 1.47 2.60 7.69 0.00 0.00 2.04 2.41 2.78 3.42 K intron_retention step chr2L - chr2L_21742699_21742775 chr2L_21742698_21742699;chr2L_21742775_21742776 chr2L_21742524_21742698;chr2L_21742776_21742875 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.23 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RN-tre chr2R - chr2R_9873352_9873494 chr2R_9873351_9873352;chr2R_9873494_9873495 chr2R_9873135_9873351;chr2R_9873495_9873549 0.00 0.00 0.00 0.00 2.82 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 2.70 0.00 0.00 3.23 0.00 0.60 0.00 1.20 0.00 0.00 0.00 0.00 1.77 3.45 2.78 0.00 1.82 0.00 0.00 0.00 0.00 0.00 1.02 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 1.80 0.00 0.58 2.60 1.12 0.00 1.64 0.89 0.73 0.00 K alternative_donor CG3719,E_chrX_1273406_1273479,I_chrX_1273406_1273486,RI_chrX_1273406_1273763 chrX - chrX_1273406_1274170;chrX_1273406_1273763 chrX_1273406_1273486 chrX_1273306_1273405;chrX_1274171_1274773 3.23 1.96 3.03 3.57 3.12 3.70 2.33 2.33 2.67 4.35 4.55 3.23 3.33 3.85 2.50 6.67 5.56 4.76 3.03 2.90 0.00 3.03 2.44 4.26 4.00 2.86 4.00 4.35 3.57 2.78 6.67 6.67 5.00 1.89 5.56 2.94 1.37 2.44 1.64 3.28 5.41 4.00 0.00 0.00 4.26 3.85 3.92 7.69 3.17 0.00 2.63 3.70 3.33 2.44 3.12 1.89 1.64 6.98 K intron_retention CG5850,I_chr2L_9963013_9963451 chr2L - chr2L_9962415_9962470 chr2L_9962414_9962415;chr2L_9962470_9962471 chr2L_9962318_9962414;chr2L_9962471_9962677 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042888_5043077;chr2L_5042888_5042983 chr2L_5042888_5042960 chr2L_5042835_5042887;chr2L_5043078_5043083 72.91 NA NA 69.23 NA NA 68.00 62.96 68.42 NA NA 57.89 NA NA 70.83 72.73 NA NA 81.82 73.81 NA NA 68.18 85.71 NA NA NA NA 71.43 90.48 NA NA 87.50 78.12 NA NA NA NA NA 75.68 84.00 84.85 NA NA NA 83.33 72.73 71.43 67.74 NA 92.00 NA NA NA 45.00 NA 73.08 92.31 K intron_retention Pof chr2R + chr2R_20556998_20557050 chr2R_20556997_20556998;chr2R_20557050_20557051 chr2R_20556952_20556997;chr2R_20557051_20557123 88.89 NA NA NA NA NA NA 88.89 NA NA NA 83.33 NA NA 88.89 90.91 NA NA NA 80.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA 77.78 66.67 NA NA NA NA 80.00 NA NA NA K intron_retention CG7091,RI_chr3R_8805541_8805680,I_chr3R_8809774_8809832 chr3R + chr3R_8804833_8804890 chr3R_8804832_8804833;chr3R_8804890_8804891 chr3R_8804612_8804832;chr3R_8804891_8805199 0.00 0.00 0.00 0.00 0.00 0.00 2.22 4.26 0.00 NA 0.00 3.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 6.25 0.00 0.00 NA 0.00 0.00 5.56 30.77 0.00 4.00 0.00 NA 8.51 0.00 NA 0.00 4.55 0.00 0.00 NA 2.86 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 2.94 5.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention MB8.chr3R.pasa.66,CG10055 chr3R - chr3R_3011480_3011535 chr3R_3011479_3011480;chr3R_3011535_3011536 chr3R_3009698_3011479;chr3R_3011536_3011932 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention MSBP,I_chrX_15783766_15784027,RI_chrX_15783766_15784064,I_chrX_15783766_15785978 chrX - chrX_15783998_15784064 chrX_15783997_15783998;chrX_15784064_15784065 chrX_15783942_15783997;chrX_15784065_15784071 56.25 54.55 52.33 36.69 50.79 48.00 47.23 46.45 47.58 62.16 46.75 50.97 36.17 47.92 62.96 44.33 48.48 45.57 52.17 46.22 47.22 70.69 71.62 60.47 78.79 86.44 78.85 90.00 87.04 75.44 52.34 65.85 45.61 48.77 56.25 75.00 56.45 71.88 50.00 78.05 84.44 43.01 52.00 75.00 58.70 75.47 58.49 72.88 44.06 50.00 70.83 56.52 73.08 81.82 52.38 67.44 55.84 67.61 K cassette Nipped-B,I_chr2R_583116_587893,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_583116_587893 chr2R_583116_586563;chr2R_586657_587893 chr2R_586564_586656 chr2R_583016_583115;chr2R_587894_587993 93.75 93.33 94.12 64.52 100.00 100.00 94.37 97.73 90.20 85.71 100.00 83.33 100.00 88.46 90.91 97.87 93.75 86.67 88.46 97.44 100.00 90.91 94.29 94.44 100.00 70.00 96.67 88.24 84.62 100.00 84.00 100.00 100.00 97.30 95.00 90.00 100.00 90.00 100.00 95.65 88.89 84.62 86.67 91.30 NA 92.86 90.91 100.00 97.78 90.00 100.00 100.00 88.89 NA 92.31 100.00 92.31 92.31 K intron_retention vav chrX + chrX_19165488_19165551 chrX_19165487_19165488;chrX_19165551_19165552 chrX_19165316_19165487;chrX_19165552_19166086 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA mfas,I_chr3R_7811954_7812017,I_chr3R_7818597_7818853,I_chr3R_7818607_7818853,RI_chr3R_7818607_7818970 chr3R - chr3R_7818597_7818853;chr3R_7818607_7818853 chr3R_7818575_7818853 chr3R_7818854_7818892;chr3R_7818507_7818574 71.88 NA 60.71 50.00 NA NA 64.00 75.00 68.42 NA NA 65.52 NA 60.00 NA 75.86 60.71 NA 70.37 73.53 76.19 NA NA NA NA NA NA NA NA NA NA NA 80.00 73.68 NA NA NA NA NA NA NA 74.29 57.14 NA NA 76.19 NA NA 72.50 NA 77.27 NA NA NA 52.38 NA NA 71.88 K jcn_only_AD CG4658,I_chr2L_9958819_9958939 chr2L + chr2L_9958819_9958939 chr2L_9958886_9958939 chr2L_9958940_9959039;chr2L_9958719_9958818 100.00 98.21 97.96 100.00 100.00 97.78 100.00 97.65 99.30 97.30 100.00 98.61 97.67 100.00 97.06 98.21 98.44 100.00 100.00 100.00 97.92 99.06 100.00 96.72 97.06 98.04 100.00 100.00 100.00 100.00 96.88 100.00 97.65 100.00 97.06 100.00 100.00 98.51 98.57 100.00 100.00 100.00 100.00 100.00 97.70 100.00 97.87 100.00 100.00 98.33 98.51 97.14 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA l(2)s5379,I_chr2L_2227282_2227349,I_chr2L_2229179_2229265 chr2L + chr2L_2227282_2229265 chr2L_2227282_2227349 chr2L_2227182_2227281;chr2L_2229266_2229365 0.61 0.60 0.46 0.77 1.30 0.61 1.38 1.22 0.00 0.00 1.33 1.52 0.00 0.70 0.78 0.38 0.62 4.79 0.84 1.82 0.63 1.58 0.00 0.00 1.22 1.13 0.00 0.00 1.19 0.96 1.28 0.38 0.57 0.53 0.83 0.55 0.00 0.90 1.84 0.46 0.00 0.00 1.27 1.06 0.70 0.23 0.00 0.90 0.50 0.00 0.00 0.00 0.00 0.71 1.20 0.00 0.00 0.33 K alternative_donor RI_chr2R_12650846_12659758,Sod2 chr2R - chr2R_12661144_12661368 chr2R_12661144_12661259 chr2R_12660421_12661143;chr2R_12661369_12661392 100.00 98.91 100.00 99.15 98.41 100.00 99.03 96.90 97.89 98.11 100.00 99.42 100.00 98.75 98.78 100.00 100.00 100.00 100.00 98.21 100.00 100.00 100.00 98.94 100.00 100.00 100.00 100.00 98.36 97.87 98.61 98.70 100.00 99.13 100.00 100.00 98.92 100.00 99.07 100.00 100.00 98.68 100.00 98.67 100.00 100.00 98.95 97.22 100.00 100.00 100.00 100.00 100.00 100.00 98.77 98.94 99.18 100.00 K alternative_donor CG1718 chrX - chrX_21163958_21164368;chrX_21163958_21164182 chrX_21163958_21164390 chrX_21163741_21163957;chrX_21164391_21164557 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 4.55 0.00 0.00 7.14 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 5.00 0.00 3.70 0.00 6.25 0.00 0.00 3.45 0.00 0.00 0.00 0.00 5.56 2.78 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 7.14 0.00 5.00 0.00 4.35 0.00 K jcn_only_AD ran,I_chrX_11040449_11042518,I_chrX_11040462_11041873,I_chrX_11040462_11042000 chrX - chrX_11040462_11042000;chrX_11040462_11042518 chrX_11040462_11041873 chrX_11040362_11040461;chrX_11042519_11042618 0.36 0.40 0.09 0.33 0.15 0.13 0.22 0.19 0.29 0.45 0.00 0.12 0.00 0.23 0.09 0.00 0.41 0.33 0.10 0.31 0.11 0.52 0.44 0.16 0.13 0.29 0.31 0.82 1.20 0.61 0.46 1.00 1.04 0.48 0.13 0.62 1.03 0.37 1.03 0.59 0.94 0.27 0.38 0.36 0.68 0.36 0.18 1.68 0.25 0.48 0.47 0.78 0.38 0.33 0.44 0.75 0.33 0.93 K intron_retention CG3744,I_chr3R_20701248_20701968 chr3R - chr3R_20697876_20697940 chr3R_20697875_20697876;chr3R_20697940_20697941 chr3R_20697211_20697875;chr3R_20697941_20698133 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 5.71 0.00 0.00 5.41 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20824494_20825271 chr2L_20824493_20824494;chr2L_20825271_20825272 chr2L_20824482_20824493;chr2L_20825272_20825366 59.55 NA NA 59.09 NA NA 62.07 55.00 56.52 NA 36.84 66.67 NA 54.55 NA 50.00 NA 36.36 63.64 64.00 NA 66.67 NA NA 63.64 NA 72.73 NA NA NA 41.67 NA 25.00 69.23 NA 60.00 NA NA NA 50.00 NA 40.00 NA NA 15.79 66.67 NA 41.67 60.87 87.50 87.50 NA NA NA 58.33 NA 100.00 NA K intron_retention dos,I_chr3L_2589746_2592161 chr3L + chr3L_2592487_2592552 chr3L_2592486_2592487;chr3L_2592552_2592553 chr3L_2592162_2592486;chr3L_2592553_2593319 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 3.77 1.13 0.00 2.27 0.00 0.00 1.63 5.37 0.00 1.23 0.00 0.00 1.05 1.18 0.96 0.00 0.00 0.00 2.41 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Rab23,I_chr3R_1508710_1508882 chr3R - chr3R_1508710_1508882;chr3R_1508710_1510597 chr3R_1508710_1511119 chr3R_1508610_1508709;chr3R_1511120_1511186 50.00 50.00 60.00 50.00 66.67 0.00 60.00 80.00 75.00 66.67 63.64 77.78 60.00 33.33 33.33 57.14 50.00 62.50 50.00 73.68 50.00 50.00 33.33 33.33 0.00 66.67 50.00 25.00 25.00 33.33 77.78 66.67 33.33 62.50 50.00 25.00 33.33 0.00 33.33 80.00 0.00 72.73 50.00 50.00 NA 60.00 50.00 25.00 80.00 50.00 33.33 50.00 75.00 NA 87.50 50.00 33.33 80.00 K intron_retention Zfrp8 chr2R + chr2R_20021950_20022003 chr2R_20021949_20021950;chr2R_20022003_20022004 chr2R_20021876_20021949;chr2R_20022004_20022890 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 5.88 12.50 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette capu,I_chr2L_3884519_3902594,I_chr2L_3887800_3888648,I_chr2L_3887896_3888648 chr2L - chr2L_3884519_3893261 chr2L_3884519_3886983;chr2L_3887800_3893261 chr2L_3886984_3887799 chr2L_3884419_3884518;chr2L_3893262_3893604 98.18 98.08 100.00 98.46 100.00 100.00 98.11 100.00 100.00 96.15 97.50 98.82 97.62 100.00 98.00 97.87 100.00 97.78 97.50 98.90 100.00 97.37 98.77 98.59 97.62 95.35 98.48 100.00 98.18 98.15 95.74 96.88 98.44 100.00 98.18 98.46 98.86 98.25 98.80 95.65 100.00 98.89 100.00 98.08 97.30 98.18 98.04 94.81 98.84 97.92 100.00 97.50 97.44 97.14 98.04 97.62 97.78 96.15 K intron_retention CG8538 chr3R - chr3R_10151801_10151858 chr3R_10151800_10151801;chr3R_10151858_10151859 chr3R_10150479_10151800;chr3R_10151859_10151953 2.94 NA NA NA NA NA NA NA 11.11 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 5.88 NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA K alternative_donor rdx,I_chr3R_9796825_9822742,I_chr3R_9849617_9851443 chr3R - chr3R_9849617_9851560;chr3R_9849617_9851443 chr3R_9849617_9851567 chr3R_9849583_9849616;chr3R_9851568_9851588 67.95 NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA 55.56 NA NA NA NA NA NA NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 69.23 NA NA NA NA NA NA NA NA NA K jcn_only_AD Gel,I_chr3R_63540_64006,I_chr3R_63962_64024,I_chr3R_66533_66599 chr3R + chr3R_63540_64024 chr3R_63962_64024 chr3R_64025_64099;chr3R_63440_63539 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.08 0.00 0.00 0.00 0.33 0.00 0.13 0.15 0.00 0.00 0.00 0.08 0.19 1.71 0.00 0.00 0.00 0.22 0.00 0.00 0.68 0.00 0.42 0.00 0.40 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.22 0.16 0.00 0.00 0.00 0.49 0.09 0.29 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA drpr,I_chr3L_1718097_1718705,I_chr3L_1718154_1723579,I_chr3L_1720385_1723579 chr3L - chr3L_1718097_1718705 chr3L_1718154_1718705 chr3L_1718706_1718805;chr3L_1718054_1718096 100.00 99.51 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Pk61C,CE_chr3L_129889_141769,I_chr3L_132531_133824,I_chr3L_133962_134014 chr3L + chr3L_132056_135457;chr3L_132531_135457;chr3L_131934_135457 chr3L_131959_135457 chr3L_135458_135842;chr3L_131849_131933 1.14 0.00 0.00 8.82 4.55 NA NA 2.27 7.14 NA NA 0.00 NA NA 0.00 NA NA NA 0.00 4.76 NA NA 4.00 NA NA 6.25 NA NA NA 4.55 NA NA 4.00 6.67 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA 3.57 NA NA NA NA NA 0.00 NA NA 0.00 K jcn_only_AD CG4165,I_chrX_5317784_5317881,I_chrX_5321743_5321838 chrX + chrX_5316160_5316612;chrX_5316300_5316612;chrX_5315965_5316612 chrX_5316313_5316612 chrX_5316613_5317050;chrX_5315939_5315964 0.00 0.00 NA 0.00 NA NA NA 4.17 0.00 NA NA 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA 2.94 0.00 NA NA NA 4.35 NA NA 4.17 NA NA 0.00 0.00 0.00 0.00 3.23 NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA K jcn_only_AA frtz chr2L - chr2L_1714474_1715138;chr2L_1714427_1715138 chr2L_1714406_1715138 chr2L_1715139_1715811;chr2L_1714173_1714405 0.00 NA NA 4.17 NA NA 0.00 2.86 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 1.96 NA 0.00 2.56 3.23 0.00 0.00 0.00 0.00 5.00 0.00 NA NA 0.00 NA 5.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA NA NA 0.00 0.00 0.00 3.57 NA NA 0.00 NA 4.55 NA N cassette CG4829,I_chrX_16717240_16717547 chrX + chrX_16711168_16717135 chrX_16711168_16716589;chrX_16716806_16717135 chrX_16716590_16716805 chrX_16711045_16711167;chrX_16717136_16717239 100.00 100.00 100.00 89.15 93.81 92.89 88.97 90.84 93.53 100.00 100.00 94.30 100.00 93.17 96.04 90.29 93.48 100.00 93.14 97.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.62 89.93 100.00 100.00 94.05 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.01 93.83 100.00 100.00 100.00 100.00 100.00 96.23 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor PP2A-B' chr3R + chr3R_14001957_14002031 chr3R_14001957_14002028 chr3R_14001726_14001956;chr3R_14002032_14002421 98.15 96.77 100.00 100.00 100.00 100.00 97.44 97.92 98.33 100.00 94.44 98.04 95.83 96.00 100.00 100.00 100.00 95.65 95.83 98.15 93.75 100.00 97.83 97.22 100.00 100.00 100.00 100.00 94.12 96.15 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 97.50 100.00 97.06 97.87 94.12 98.33 96.30 97.96 96.97 95.24 100.00 96.55 96.55 98.15 96.00 K jcn_only_AA CG12077,F_chr3L_3318595_3318666,RI_chr3L_3318595_3318691 chr3L - chr3L_3318590_3318691 chr3L_3318595_3318691 chr3L_3318692_3318766;chr3L_3318495_3318589 0.00 NA 4.55 0.00 NA NA 0.00 0.00 0.00 NA NA 5.00 NA NA NA 0.00 NA NA NA 4.65 NA 0.00 6.00 0.00 4.76 NA 2.70 3.57 NA NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 4.76 0.00 NA NA NA NA 0.00 NA NA K intron_retention I_chr2R_19265701_19270570,CG3520 chr2R - chr2R_19288101_19289149 chr2R_19288100_19288101;chr2R_19289149_19289150 chr2R_19287882_19288100;chr2R_19289150_19289425 2.86 NA 0.00 0.00 4.55 NA 0.00 4.35 0.00 NA NA 6.25 NA NA 5.00 5.56 0.00 0.00 NA 0.00 0.00 60.00 4.44 2.86 5.56 NA 3.23 0.00 15.38 0.00 0.00 NA 15.00 8.33 0.00 8.33 2.13 0.00 5.56 3.57 NA 2.38 0.00 4.76 NA 14.29 NA NA 0.00 5.88 5.71 NA NA NA 0.00 0.00 NA NA K intron_retention CG42637,CG42636,EF_chr3L_19783353_19784547,I_chr3L_19783355_19783974,I_chr3L_19783355_19784551,RI_chr3L_19783355_19786527,I_chr3L_19783355_19786594 chr3L - chr3L_19783355_19783983 chr3L_19783354_19783355;chr3L_19783983_19783984 chr3L_19783255_19783354;chr3L_19783984_19784074 29.41 NA 30.77 26.32 NA NA 30.77 14.29 26.32 NA NA 29.41 45.45 29.41 NA 22.73 NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 29.41 NA NA NA NA NA 46.15 NA 20.00 14.29 NA NA NA NA NA 34.78 NA 33.33 NA NA NA NA NA NA NA K jcn_only_AA rin,I_chr3R_9476825_9476895 chr3R + chr3R_9472923_9473104;chr3R_9472923_9474639 chr3R_9472923_9473143 chr3R_9472709_9472922 0.00 0.63 0.00 1.98 0.00 0.00 0.00 0.21 0.32 0.00 0.54 0.25 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.55 0.86 0.00 0.00 0.78 0.80 0.00 1.54 0.44 0.00 0.59 0.39 0.00 0.96 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.76 0.00 NA 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2815654_2816013 chr2R_2815653_2815654;chr2R_2816013_2816014 chr2R_2815599_2815653;chr2R_2816014_2816113 90.45 NA NA NA NA NA 100.00 NA NA NA NA 90.00 NA NA NA NA NA NA NA 73.33 NA 100.00 90.91 NA NA NA NA NA NA 90.91 NA NA 80.00 NA NA NA 73.33 NA 100.00 92.31 72.73 87.50 NA NA NA 81.82 NA 92.31 NA NA NA NA NA NA NA NA NA NA K intron_retention CG14184,I_chr3L_20021910_20021979 chr3L - chr3L_20021479_20021745 chr3L_20021478_20021479;chr3L_20021745_20021746 chr3L_20021345_20021478;chr3L_20021746_20021909 0.00 0.00 0.00 0.00 0.00 0.00 2.99 0.00 1.68 0.00 0.00 3.88 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 2.99 0.00 2.56 1.41 2.44 0.00 0.00 0.00 0.00 0.00 1.41 0.00 2.33 0.00 1.59 0.00 0.00 0.00 1.72 0.00 0.00 0.00 K alternative_donor BtbVII,I_chr3L_3150858_3150927,I_chr3L_3151185_3151263 chr3L + chr3L_3148688_3149627;chr3L_3148748_3149627 chr3L_3148738_3149627 chr3L_3149628_3150153;chr3L_3148679_3148687 0.00 NA NA 9.09 NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 K alternative_last_exon sgg,I_chrX_2565856_2566099,I_chrX_2566157_2566946 chrX + chrX_2567652_2571133 chrX_2567652_2568629 chrX_2571134_2572136 chrX_2568630_2570701 chrX_2567208_2567651 94.87 96.88 96.55 96.20 89.47 92.00 97.14 96.10 96.51 91.18 100.00 94.03 97.30 97.37 94.12 97.10 96.43 97.14 97.56 95.35 95.65 91.84 95.92 93.18 92.86 97.14 94.87 89.47 90.24 91.67 91.89 93.18 91.04 95.52 93.10 95.35 95.24 91.67 93.10 94.37 95.31 94.20 96.55 92.00 83.93 90.32 94.00 86.57 94.67 97.50 94.00 96.15 97.06 96.88 97.14 94.29 96.30 93.42 K intron_retention Cdc42 chrX + chrX_19592279_19592339 chrX_19592278_19592279;chrX_19592339_19592340 chrX_19591968_19592278;chrX_19592340_19593717 0.00 0.00 0.00 0.28 0.00 0.37 0.17 0.00 0.00 0.00 0.00 0.21 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.19 0.00 0.57 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.13 0.16 0.00 0.20 0.16 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 K alternative_acceptor sxc,I_chr2R_1203985_1205289,I_chr2R_1208121_1213310,I_chr2R_1213177_1213308 chr2R + chr2R_1194858_1194977 chr2R_1194858_1194918 chr2R_1194848_1194857;chr2R_1194978_1195157 100.00 100.00 93.75 100.00 100.00 100.00 100.00 97.06 96.88 100.00 90.91 100.00 95.65 100.00 100.00 97.62 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 NA 100.00 96.97 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 92.31 100.00 NA NA 100.00 100.00 97.44 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 K intron_retention casp,EI_chr2R_11914764_11914841 chr2R - chr2R_11913360_11913417 chr2R_11913359_11913360;chr2R_11913417_11913418 chr2R_11913214_11913359;chr2R_11913418_11913572 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 3.88 0.00 0.00 0.00 0.00 4.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 2.94 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 2.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 K jcn_only_AD Hr39,I_chr2L_21256047_21256260 chr2L + chr2L_21237347_21238280;chr2L_21237385_21238280;chr2L_21237364_21238280;chr2L_21237397_21238280;chr2L_21237405_21238280 chr2L_21237421_21238280 chr2L_21238281_21238529;chr2L_21237247_21237346 44.44 NA NA 60.00 NA NA 60.00 51.61 34.15 NA NA 45.71 39.13 NA NA 28.57 NA NA NA 33.33 NA NA 26.47 45.00 NA NA 34.38 NA NA NA 40.91 NA NA 44.44 45.45 NA NA NA NA 23.53 NA 37.14 NA 20.83 NA NA NA 50.00 45.24 NA 54.17 NA NA NA 58.33 NA NA NA K intron_retention sqd,I_chr3R_9462248_9471474,I_chr3R_9470417_9471474 chr3R - chr3R_9470293_9471474 chr3R_9470292_9470293;chr3R_9471474_9471475 chr3R_9470231_9470292;chr3R_9471475_9471574 41.67 NA NA NA NA NA 60.00 46.15 53.33 NA NA 46.15 NA NA NA NA NA NA NA 38.89 NA NA 20.00 NA 54.55 NA NA 41.67 NA NA 19.05 NA NA 41.67 NA NA NA NA NA 21.43 NA 40.00 NA NA NA NA NA NA 23.81 NA NA NA NA NA NA NA NA NA K intron_retention CG5317 chr2L + chr2L_12057148_12057214 chr2L_12057147_12057148;chr2L_12057214_12057215 chr2L_12056499_12057147;chr2L_12057215_12058251 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.52 0.00 0.00 0.53 0.27 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.39 0.00 0.60 1.70 5.13 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.41 0.23 0.00 0.00 0.00 0.49 0.33 0.00 0.40 0.38 0.37 0.33 0.00 0.38 0.49 0.00 0.52 0.49 0.00 K jcn_only_AA Usp7,I_chrX_11922059_11922456 chrX - chrX_11922059_11922456 chrX_11922073_11922456 chrX_11922457_11922556;chrX_11921983_11922058 100.00 100.00 100.00 98.57 100.00 100.00 96.92 100.00 98.23 100.00 96.77 100.00 100.00 97.83 100.00 100.00 97.96 97.30 100.00 100.00 100.00 100.00 98.31 98.15 96.43 97.30 97.56 72.41 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 97.22 95.65 100.00 100.00 100.00 97.14 97.87 NA 100.00 96.00 100.00 98.33 NA 98.15 100.00 NA NA 100.00 100.00 NA NA K jcn_only_AD CG30389,CEF_chr2R_17041552_17043191,I_chr2R_17044803_17047935 chr2R - chr2R_17041672_17042219 chr2R_17041672_17042048 chr2R_17041640_17041671;chr2R_17042220_17042432 0.20 1.15 0.00 2.56 0.00 NA 1.89 0.00 0.00 2.00 NA 3.39 0.00 0.00 3.57 5.56 0.00 NA NA 1.29 0.00 0.00 1.48 0.46 0.00 NA 0.65 0.00 1.16 0.83 0.00 0.00 0.00 0.00 0.00 1.40 1.47 0.60 0.40 0.00 0.00 0.00 NA 0.63 0.00 1.18 0.85 6.35 0.00 0.74 0.00 0.00 2.86 0.00 0.00 2.56 1.12 NA K jcn_only_AA CG3074,I_chr2R_18079355_18080538,I_chr2R_18079355_18089994 chr2R - chr2R_18079355_18080538 chr2R_18079361_18080538 chr2R_18080539_18080638;chr2R_18079255_18079354 100.00 NA 100.00 96.30 100.00 100.00 96.55 100.00 100.00 NA NA 97.73 NA 95.65 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 96.88 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 90.00 100.00 96.55 100.00 98.18 96.00 100.00 100.00 100.00 100.00 95.35 100.00 100.00 100.00 NA NA NA 100.00 100.00 100.00 NA K intron_retention pgant5,I_chr2L_5074530_5077534,I_chr2L_5079575_5093241 chr2L - chr2L_5077258_5077534 chr2L_5077257_5077258;chr2L_5077534_5077535 chr2L_5077077_5077257;chr2L_5077535_5077634 4.29 2.90 1.37 6.19 0.00 2.74 9.23 6.45 5.84 1.39 4.84 3.08 4.55 7.81 4.35 2.78 6.38 5.26 5.06 4.29 2.53 5.88 5.75 1.39 6.52 5.00 4.76 10.71 2.50 3.81 0.00 5.17 4.49 5.50 1.54 4.41 4.35 5.63 5.15 1.91 1.41 4.12 6.35 3.30 0.00 1.92 6.12 2.29 6.15 0.00 2.50 4.44 4.08 3.92 2.44 0.00 4.17 0.77 N jcn_only_AD 4EHP,RI_chr3R_19927769_19928262 chr3R - chr3R_19927769_19932546;chr3R_19927769_19929293 chr3R_19927769_19928262 chr3R_19927676_19927768;chr3R_19932547_19933006 0.00 0.00 1.96 1.16 4.08 2.22 2.27 1.67 1.50 NA NA 0.00 0.00 0.00 0.00 4.76 0.00 2.38 2.04 2.53 NA 1.75 0.00 0.00 0.00 0.00 2.08 4.00 0.00 0.00 1.89 NA 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K cassette CG2316,I_chr4_208796_210623,I_chr4_209150_214298,I_chr4_209369_210623,I_chr4_209875_213969,RI_chr4_209875_214450,I_chr4_210688_213991,RI_chr4_210688_214450 chr4 - chr4_208796_209050 chr4_208796_208855;chr4_208996_209050 chr4_208856_208995 chr4_208696_208795;chr4_209051_209147 94.12 98.04 93.44 83.96 95.92 92.59 90.00 97.18 96.86 89.47 95.83 92.56 98.51 96.67 95.16 86.79 93.06 94.12 92.39 96.00 83.72 100.00 88.37 97.50 93.55 67.31 95.74 90.48 94.44 92.50 84.62 94.12 92.00 92.96 92.50 50.00 90.62 93.94 96.77 95.24 92.59 94.26 98.59 98.33 95.65 97.50 97.14 97.06 91.18 97.14 98.36 97.37 92.86 95.83 95.24 96.97 90.24 92.00 K intron_retention I_chr2R_19932706_19933121,gammaSnap chr2R - chr2R_19935784_19935857 chr2R_19935783_19935784;chr2R_19935857_19935858 chr2R_19935589_19935783;chr2R_19935858_19935973 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Vps4,I_chrX_17802079_17802606 chrX + chrX_17802747_17802840 chrX_17802746_17802747;chrX_17802840_17802841 chrX_17802607_17802746;chrX_17802841_17803702 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.31 0.00 0.25 0.00 0.00 0.00 0.44 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG31689,I_chr2L_2730373_2736310,I_chr2L_2736431_2737036 chr2L + chr2L_2736431_2737036 chr2L_2736431_2737031 chr2L_2736331_2736430;chr2L_2737037_2737136 100.00 98.31 98.11 100.00 97.50 97.62 100.00 100.00 100.00 NA 100.00 98.94 100.00 95.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.60 100.00 100.00 99.24 98.11 98.04 96.92 97.50 96.77 92.00 98.80 100.00 98.51 98.77 100.00 99.04 97.87 100.00 98.39 95.24 100.00 100.00 100.00 94.12 100.00 99.05 100.00 100.00 100.00 100.00 100.00 97.14 98.59 100.00 100.00 K alternative_acceptor SelR,I_chr3R_6692390_6692530,I_chr3R_6692461_6692530,I_chr3R_6694098_6694160 chr3R - chr3R_6692416_6692530 chr3R_6692461_6692530 chr3R_6692531_6692630;chr3R_6692361_6692415 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 2.27 0.00 0.00 0.00 1.79 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention cni,RI_chr2L_16309575_16309999,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16310380_16310440 chr2L_16310379_16310380;chr2L_16310440_16310441 chr2L_16310267_16310379;chr2L_16310441_16310623 0.00 0.74 0.00 1.83 0.00 1.57 1.60 1.15 0.53 0.00 0.79 0.00 0.00 0.00 0.00 0.47 1.67 0.00 0.00 1.13 0.00 0.00 0.61 0.00 2.11 0.76 1.31 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 2.82 0.00 0.00 0.70 0.00 0.74 0.00 0.00 0.00 0.00 0.84 0.77 0.00 1.98 0.00 0.95 1.11 0.00 0.00 0.00 K jcn_only_AD CG8312 chr3R + chr3R_5433697_5447240 chr3R_5433701_5447240 chr3R_5447241_5448139;chr3R_5433636_5433696 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention sdt,C_chrX_8118081_8119117,I_chrX_8131684_8131842 chrX + chrX_8087420_8087500 chrX_8087419_8087420;chrX_8087500_8087501 chrX_8087382_8087419;chrX_8087501_8087534 95.45 93.75 96.15 94.74 100.00 100.00 100.00 96.88 87.27 91.67 100.00 93.75 100.00 90.48 100.00 88.89 93.75 93.75 100.00 95.65 100.00 91.67 96.00 95.45 100.00 100.00 86.67 87.50 100.00 100.00 95.83 NA 68.75 96.88 86.67 91.67 95.00 92.31 83.33 90.91 NA 93.48 100.00 95.45 90.91 100.00 88.89 100.00 97.30 90.00 96.00 92.31 91.67 NA 96.43 100.00 NA 100.00 K intron_retention CG10737 chr2R + chr2R_15061871_15062081 chr2R_15061870_15061871;chr2R_15062081_15062082 chr2R_15061844_15061870;chr2R_15062082_15062288 4.79 5.56 4.55 2.61 4.95 3.77 17.33 4.79 3.65 0.00 5.63 3.80 2.63 2.30 6.19 7.69 6.94 5.10 3.26 6.53 6.49 8.25 5.17 7.23 6.12 3.33 4.62 7.55 3.64 2.56 6.31 3.77 3.23 5.00 3.12 2.47 6.06 9.76 4.46 5.08 8.62 3.76 6.15 3.60 0.00 3.03 5.10 2.56 6.91 5.77 4.42 4.08 6.17 3.37 5.50 5.97 4.72 2.15 K alternative_acceptor Sucb chr3L - chr3L_5555968_5556184 chr3L_5555972_5556184 chr3L_5556185_5556284;chr3L_5555387_5555967 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.00 100.00 100.00 97.44 94.44 100.00 96.55 96.55 100.00 100.00 100.00 97.92 95.24 97.30 100.00 100.00 100.00 100.00 100.00 100.00 96.30 95.45 95.65 100.00 100.00 96.77 93.10 95.83 100.00 95.00 96.67 98.36 96.88 97.83 100.00 96.77 100.00 100.00 100.00 98.48 97.67 100.00 100.00 100.00 94.74 100.00 100.00 100.00 94.12 90.77 K alternative_donor CoRest,I_chrX_19416977_19417035 chrX + chrX_19416603_19417035;chrX_19416977_19417035;chrX_19416669_19417035;chrX_19416423_19417035 chrX_19416431_19417035 chrX_19417036_19417135;chrX_19416201_19416422 11.54 14.06 19.44 11.54 10.00 12.20 10.53 13.46 11.11 14.71 14.71 11.25 8.82 5.88 6.67 6.38 12.50 4.76 5.56 9.28 12.12 10.29 13.19 12.66 6.82 11.32 14.06 7.69 10.20 12.00 9.30 7.32 16.36 8.33 14.55 10.77 10.28 12.36 11.90 10.78 13.04 8.99 14.29 12.00 14.58 15.69 11.54 12.07 16.05 16.33 9.57 11.36 13.16 6.25 11.32 13.64 7.32 15.22 K intron_retention Nhe2,I_chr2L_21122390_21122912 chr2L + chr2L_21124522_21125346 chr2L_21124521_21124522;chr2L_21125346_21125347 chr2L_21124443_21124521;chr2L_21125347_21125439 12.06 7.41 8.70 26.53 13.79 16.67 7.89 11.48 14.71 7.41 11.76 26.53 17.65 15.15 11.63 6.56 6.90 5.71 13.51 7.46 0.00 22.22 13.04 14.63 16.67 18.75 15.09 21.43 0.00 14.29 16.28 15.38 9.68 13.64 10.71 21.88 9.09 6.67 12.77 12.77 13.33 9.52 9.68 15.38 21.05 12.12 10.53 9.68 10.42 12.00 11.11 17.24 0.00 NA 9.52 14.29 9.09 8.33 K intron_retention CG7207 chr3L - chr3L_8280858_8280927 chr3L_8280857_8280858;chr3L_8280927_8280928 chr3L_8280709_8280857;chr3L_8280928_8281320 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 1.83 1.69 2.04 0.60 1.25 0.00 0.00 3.14 2.30 0.00 0.98 1.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.61 0.00 1.82 0.00 0.00 0.00 1.43 1.43 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 1.57 0.55 K jcn_only_AA dmondo,I_chr2L_21289375_21289461,I_chr2L_21301528_21308287,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579 chr2L - chr2L_21289375_21289461 chr2L_21289405_21289461 chr2L_21289462_21289548;chr2L_21289275_21289374 100.00 100.00 100.00 99.24 100.00 98.78 99.31 100.00 100.00 100.00 100.00 100.00 99.05 98.81 100.00 99.33 100.00 98.85 100.00 100.00 100.00 99.29 99.41 100.00 100.00 100.00 100.00 100.00 98.00 98.90 99.03 100.00 100.00 100.00 97.83 100.00 98.26 97.50 99.14 100.00 100.00 99.50 100.00 100.00 100.00 100.00 98.96 100.00 100.00 98.98 100.00 100.00 100.00 97.10 99.11 100.00 99.09 99.14 K alternative_acceptor hyx,RI_chr3R_4867356_4867447 chr3R + chr3R_4867356_4867447 chr3R_4867356_4867422 chr3R_4867256_4867355;chr3R_4867448_4867547 100.00 100.00 96.30 100.00 100.00 100.00 100.00 97.44 97.73 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 96.15 100.00 96.77 93.55 100.00 96.00 96.43 96.88 96.30 100.00 97.50 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 97.37 95.45 100.00 95.65 100.00 97.30 100.00 97.37 K alternative_acceptor Eps-15,I_chr2R_20660319_20660496 chr2R - chr2R_20657207_20659247 chr2R_20657585_20659247 chr2R_20659248_20659313;chr2R_20656942_20657206 95.80 96.67 90.41 93.91 95.65 92.86 94.92 95.06 96.18 93.44 100.00 100.00 89.74 98.04 98.51 91.07 95.92 94.44 92.31 95.80 96.23 100.00 96.85 95.19 98.46 94.12 98.82 96.30 95.31 96.58 94.29 95.24 96.15 95.35 95.18 97.67 96.48 94.19 96.95 96.02 96.30 94.93 97.78 95.74 94.97 96.03 98.96 95.24 91.96 95.45 95.92 92.31 96.55 98.90 95.95 90.11 96.58 94.85 K intron_retention mys,I_chrX_7958795_7961094 chrX + chrX_7960216_7961094 chrX_7960215_7960216;chrX_7961094_7961095 chrX_7960131_7960215;chrX_7961095_7961194 10.58 5.00 10.53 20.83 8.89 8.11 29.03 15.29 7.86 NA 12.50 22.86 13.04 6.58 10.00 13.51 5.21 12.90 13.58 7.76 9.09 10.34 13.33 13.04 19.05 10.77 10.87 NA NA 17.95 8.57 NA 5.26 11.76 10.00 16.67 6.12 13.04 7.14 10.53 NA 10.58 11.63 4.35 NA 15.38 8.00 26.67 17.81 20.00 7.69 5.13 NA 0.00 9.23 12.00 0.00 NA K intron_retention CG34123,I_chr2R_11159045_11159622,RI_chr2R_11160894_11162043,I_chr2R_11167854_11168411 chr2R - chr2R_11154968_11155310 chr2R_11154967_11154968;chr2R_11155310_11155311 chr2R_11154735_11154967;chr2R_11155311_11155321 30.77 NA NA NA NA NA NA NA 30.77 NA NA 46.15 NA NA NA NA NA NA NA NA NA 18.42 NA NA NA NA 60.00 NA NA NA NA NA NA NA NA 27.78 NA NA NA NA NA NA NA NA 18.75 NA NA 42.86 NA NA NA NA NA NA NA NA NA NA K intron_retention slmb,I_chr3R_16951107_16953048 chr3R - chr3R_16946692_16946751 chr3R_16946691_16946692;chr3R_16946751_16946752 chr3R_16946556_16946691;chr3R_16946752_16946941 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor I_chr3L_7374787_7375310,smid,I_chr3L_7375166_7375310,I_chr3L_7375435_7375508 chr3L + chr3L_7375112_7375310;chr3L_7375166_7375310 chr3L_7375255_7375310 chr3L_7375311_7375410;chr3L_7375066_7375111 0.00 2.17 0.00 1.92 0.00 0.00 1.61 0.00 0.00 0.00 8.33 2.04 0.00 2.13 1.96 1.03 4.17 0.00 0.00 1.41 0.00 0.00 0.00 1.61 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 4.17 0.00 1.94 0.00 2.74 0.00 0.96 0.00 0.00 0.00 2.99 2.22 2.27 0.00 1.27 2.44 0.00 0.00 0.00 3.51 0.00 K intron_retention Vha26,I_chr3R_1417553_1417709 chr3R + chr3R_1417553_1417650 chr3R_1417552_1417553;chr3R_1417650_1417651 chr3R_1417478_1417552;chr3R_1417651_1417760 1.35 0.00 1.28 1.12 0.00 0.00 2.04 0.93 1.35 3.45 0.00 1.13 0.00 1.35 0.00 1.13 0.00 0.00 0.00 1.26 0.00 0.00 2.97 3.30 1.30 2.29 8.54 2.44 2.74 3.30 2.30 2.56 3.28 0.95 0.00 11.86 1.75 0.00 1.05 3.39 7.25 1.61 0.00 3.00 0.00 1.79 0.00 3.16 1.62 1.23 3.28 2.11 2.56 2.94 0.93 2.60 0.00 1.46 K intron_retention Spargel,RI_chr3R_252723_254271,noncoding_14534 chr3R - chr3R_249596_249654 chr3R_249595_249596;chr3R_249654_249655 chr3R_249450_249595;chr3R_249655_251486 0.00 0.00 5.26 3.88 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 6.52 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 K jcn_only_AD CG4365 chr3L + chr3L_20792089_20792242;chr3L_20791819_20792242;chr3L_20792100_20792242;chr3L_20792077_20792242 chr3L_20791960_20792242 chr3L_20792243_20793181;chr3L_20791802_20791818 1.30 0.00 3.57 11.11 NA NA 0.00 4.76 4.48 NA 2.44 0.00 NA 0.00 0.00 3.23 4.17 0.00 0.00 1.30 0.00 0.00 7.41 0.00 NA 6.90 10.71 4.35 NA NA 3.85 NA 3.45 0.00 NA NA 0.00 0.00 4.35 3.57 NA 3.64 0.00 0.00 0.00 0.00 0.00 4.00 0.00 6.67 0.00 NA 4.88 4.35 3.33 2.86 0.00 0.00 K intron_retention CG1718 chrX - chrX_21170637_21171177 chrX_21170636_21170637;chrX_21171177_21171178 chrX_21170591_21170636;chrX_21171178_21171339 12.50 NA NA NA NA NA NA 16.67 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA K alternative_donor ftz-f1,I_chr3L_18790575_18790636 chr3L - chr3L_18746544_18747413 chr3L_18746544_18746932 chr3L_18746285_18746543;chr3L_18747414_18747612 5.56 3.57 3.85 1.69 0.00 3.70 7.69 2.56 3.33 11.76 9.09 4.26 3.45 0.00 5.56 11.43 0.00 3.70 2.70 1.82 4.35 16.33 7.32 9.09 21.05 3.57 11.43 12.50 25.00 8.33 3.85 4.35 9.09 2.27 5.88 21.88 12.12 4.00 6.82 6.35 18.75 4.35 5.00 10.34 8.33 10.00 6.67 12.20 4.08 8.33 7.32 10.53 5.56 0.00 2.70 5.26 0.00 3.85 K jcn_only_AA CG11504 chr3R + chr3R_25823929_25823996 chr3R_25823929_25823992 chr3R_25823519_25823928;chr3R_25823997_25825464 97.80 100.00 NA 95.45 NA NA NA 100.00 97.73 NA 100.00 97.50 100.00 NA NA 100.00 NA NA NA 97.87 NA NA 100.00 100.00 NA NA 96.55 100.00 85.19 NA NA NA 96.97 NA NA 88.46 98.11 97.14 96.08 100.00 NA 96.97 NA 100.00 100.00 93.55 95.83 100.00 91.89 95.65 100.00 NA 96.55 100.00 NA 95.65 96.97 100.00 K intron_retention RpS24,I_chr2R_18528611_18528714,E_chr2R_18528611_18528868 chr2R - chr2R_18528611_18528858 chr2R_18528610_18528611;chr2R_18528858_18528859 chr2R_18528511_18528610;chr2R_18528859_18528927 0.05 0.00 0.06 0.03 0.05 0.00 0.07 0.07 0.05 0.00 0.00 0.12 0.03 0.00 0.09 0.02 0.00 0.00 0.00 0.06 0.00 0.13 0.00 0.00 0.06 0.09 0.23 0.75 0.35 0.25 0.21 0.09 0.00 0.06 0.00 0.00 0.09 0.00 0.08 0.18 0.00 0.05 0.03 0.00 0.00 0.06 0.14 0.00 0.11 0.13 0.00 0.00 0.08 0.11 0.05 0.11 0.08 0.26 K intron_retention Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8107001_8107065 chr2L_8107000_8107001;chr2L_8107065_8107066 chr2L_8106840_8107000;chr2L_8107066_8107173 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive Gug,R_chr3L_8444636_8444874,I_chr3L_8455244_8456103 chr3L + chr3L_8443558_8455071,chr3L_8455189_8456103 chr3L_8443558_8444874,chr3L_8445229_8456103 chr3L_8455072_8455188 chr3L_8444875_8445228 chr3L_8443524_8443557;chr3L_8456104_8456203 25.00 NA NA NA NA NA 20.00 NA 16.67 75.00 NA NA NA NA NA 28.57 NA NA NA NA NA NA NA NA NA 25.00 NA NA 16.67 NA NA NA NA NA NA 50.00 NA NA NA 20.00 NA 25.00 50.00 NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA 25.00 K intron_retention CG15097,I_chr2R_14712075_14712152,I_chr2R_14713403_14713523 chr2R - chr2R_14712075_14712208 chr2R_14712074_14712075;chr2R_14712208_14712209 chr2R_14711975_14712074;chr2R_14712209_14712252 6.67 NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 11.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG32982,I_chr2L_9127467_9148754,EF_chr2L_9135385_9148841,F_chr2L_9149162_9154658 chr2L + chr2L_9162709_9163140;chr2L_9162709_9163294 chr2L_9162709_9163143 chr2L_9162363_9162708;chr2L_9163295_9163398 5.00 4.69 3.85 5.71 2.56 3.70 6.12 6.90 8.99 6.82 0.00 0.00 NA 2.63 6.98 3.45 3.85 3.70 0.00 3.33 3.85 5.76 3.85 8.33 4.88 8.00 7.23 6.67 4.55 3.33 2.44 6.00 7.02 9.09 2.13 5.45 7.84 4.17 4.76 6.25 5.41 6.17 5.00 3.94 2.22 5.75 7.87 8.57 8.96 6.49 5.32 1.96 9.68 1.32 5.00 3.30 8.22 3.75 K jcn_only_AD CEI_chr3R_10927927_10937314,CG6934 chr3R - chr3R_10937912_10957499;chr3R_10937912_10957457 chr3R_10937912_10957329 chr3R_10937315_10937911;chr3R_10957500_10957513 95.65 100.00 87.50 93.94 NA 100.00 NA 89.36 98.53 NA 95.65 94.64 NA 100.00 96.97 100.00 NA 97.37 97.78 92.45 94.87 86.96 98.28 97.67 96.00 NA 100.00 97.73 91.67 93.33 100.00 NA 90.00 96.43 97.30 94.12 95.16 94.87 95.08 94.94 100.00 95.65 100.00 94.81 NA 97.87 95.00 91.11 93.62 NA 94.83 95.24 95.65 NA 96.00 88.46 NA 96.97 K jcn_only_AD CG9795,I_chr3R_151216_151418 chr3R + chr3R_151216_151418;chr3R_151180_151418;chr3R_151212_151418 chr3R_151184_151418 chr3R_151419_151518;chr3R_151116_151179 0.00 NA 8.70 4.17 0.00 0.00 4.35 0.00 1.75 0.00 NA 0.00 NA NA NA 2.94 0.00 0.00 0.00 0.00 NA 0.00 2.33 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA 2.44 NA 0.00 7.41 4.35 3.33 3.85 NA 2.44 0.00 0.00 4.00 4.00 3.12 NA 0.00 1.43 6.25 0.00 NA NA 0.00 3.85 0.00 0.00 K jcn_only_AA Nedd4,I_chr3L_17534504_17535990,I_chr3L_17535485_17536604,I_chr3L_17536813_17536863 chr3L + chr3L_17535485_17535689 chr3L_17535485_17535650 chr3L_17535417_17535484;chr3L_17535690_17535734 86.66 NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG4452 chr3L + chr3L_9361114_9361200 chr3L_9361118_9361200 chr3L_9361201_9361314;chr3L_9361049_9361113 0.00 0.00 1.79 2.47 0.00 2.86 0.00 3.08 0.90 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 4.48 3.00 0.00 0.00 3.23 1.54 3.64 0.00 0.00 3.03 0.00 0.00 0.00 1.79 0.00 0.00 1.27 2.22 1.23 0.00 1.16 0.00 1.22 2.08 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 1.39 0.00 1.72 0.00 K intron_retention nes chr3L - chr3L_19253331_19253745 chr3L_19253330_19253331;chr3L_19253745_19253746 chr3L_19253215_19253330;chr3L_19253746_19253779 58.12 NA NA NA 70.00 NA 60.00 50.00 54.55 NA NA 64.29 NA NA 53.85 77.78 NA NA 70.00 52.94 NA NA NA NA 60.00 NA 72.73 NA NA NA NA NA NA 50.00 NA NA NA NA NA 70.00 NA 53.33 NA NA NA NA NA NA 56.25 NA NA NA NA NA 46.15 NA NA NA K intron_retention CG12547 chr2R - chr2R_674581_674642 chr2R_674580_674581;chr2R_674642_674643 chr2R_674471_674580;chr2R_674643_675850 10.39 NA NA NA NA NA 13.64 6.67 16.67 NA NA 4.76 NA NA NA 50.00 11.11 NA 17.39 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 5.56 NA NA NA NA NA 6.67 NA 9.68 5.56 NA NA NA NA NA 20.00 NA NA NA NA NA 13.33 NA NA NA K intron_retention CG7044 chr3R - chr3R_16927101_16927170 chr3R_16927100_16927101;chr3R_16927170_16927171 chr3R_16926917_16927100;chr3R_16927171_16927520 0.00 7.50 0.00 1.96 0.00 0.00 3.90 0.00 2.47 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 8.57 0.00 4.62 0.00 20.51 0.00 4.76 0.00 3.45 0.00 0.00 2.94 1.67 2.94 4.26 2.13 10.53 4.17 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K alternative_acceptor Sec16,I_chrX_12501913_12502010,I_chrX_12502899_12502973 chrX + chrX_12498831_12498896 chrX_12498831_12498893 chrX_12498681_12498830;chrX_12498897_12499421 85.71 78.95 77.78 85.19 70.59 83.33 84.62 79.31 94.44 91.67 92.86 96.30 69.23 87.50 76.47 72.73 87.50 85.71 77.78 90.70 88.89 86.21 81.08 92.00 80.00 72.22 90.91 91.67 94.44 94.44 82.61 92.86 85.19 67.65 73.33 94.74 90.24 60.00 94.74 79.17 87.50 78.12 71.43 75.86 93.33 83.33 88.24 94.12 80.00 100.00 95.00 72.22 90.00 88.89 81.82 62.50 92.31 100.00 K intron_retention D1,RI_chr3R_5065631_5065691,I_chr3R_5065631_5065695,I_chr3R_5065631_5065697 chr3R - chr3R_5065631_5065697 chr3R_5065630_5065631;chr3R_5065697_5065698 chr3R_5065531_5065630;chr3R_5065698_5065704 98.72 98.65 97.94 99.31 98.61 96.97 98.94 99.33 97.97 100.00 98.08 98.21 98.97 98.86 99.15 98.68 98.28 98.67 97.20 97.78 95.71 100.00 100.00 99.06 100.00 99.10 98.68 100.00 94.79 97.62 99.03 99.08 100.00 97.04 98.72 98.68 100.00 98.31 98.68 99.47 99.28 98.86 98.77 98.59 99.17 99.46 98.89 98.12 99.06 98.81 98.73 98.57 98.67 98.61 96.97 98.90 98.68 97.12 K intron_retention I_chr3L_834336_834491,CG13887,Gr61a chr3L + chr3L_837946_838048 chr3L_837945_837946;chr3L_838048_838049 chr3L_837877_837945;chr3L_838049_838624 20.79 14.29 22.45 25.22 7.50 20.83 22.67 20.31 13.43 14.29 20.93 23.91 21.05 26.53 31.25 10.95 22.22 20.45 20.75 13.57 30.00 16.18 29.41 29.17 54.90 59.70 57.14 23.08 12.50 14.29 28.79 10.77 13.24 15.38 30.43 47.83 14.71 22.86 29.17 13.21 16.81 12.73 17.50 14.93 7.03 10.19 40.74 6.96 11.81 29.27 43.59 20.00 30.77 NA 23.26 25.00 17.54 7.34 K alternative_acceptor cact,RI_chr2L_16314859_16315116,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16324901_16326020 chr2L_16325055_16326020 chr2L_16326021_16326108;chr2L_16324801_16324900 100.00 98.51 100.00 98.51 98.00 100.00 100.00 98.73 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 97.92 99.08 100.00 100.00 98.97 98.95 100.00 100.00 98.65 97.30 100.00 100.00 100.00 97.73 100.00 98.73 100.00 100.00 98.72 100.00 100.00 100.00 97.73 98.37 100.00 98.59 100.00 100.00 98.55 100.00 98.94 98.55 100.00 95.83 100.00 100.00 98.11 100.00 97.06 100.00 K intron_retention CG1637,I_chrX_10767807_10771447 chrX - chrX_10769204_10769273 chrX_10769203_10769204;chrX_10769273_10769274 chrX_10767933_10769203;chrX_10769274_10769620 6.67 NA NA NA NA NA NA NA 9.09 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 7.69 10.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Cyp1,RI_chrX_16212641_16213159,RI_chrX_16212641_16213308,I_chrX_16212641_16213680,I_chrX_16212641_16213960 chrX - chrX_16212641_16214111 chrX_16212640_16212641;chrX_16214111_16214112 chrX_16212541_16212640;chrX_16214112_16214235 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.04 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10260 chrX + chrX_2525314_2525397 chrX_2525313_2525314;chrX_2525397_2525398 chrX_2523509_2525313;chrX_2525398_2526314 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 2.70 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor exd chrX + chrX_15888639_15888717 chrX_15888648_15888717 chrX_15888718_15890040;chrX_15888380_15888638 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.51 0.00 0.00 1.02 0.00 0.00 0.00 0.00 0.91 0.00 K intron_retention Rnp4F,I_chrX_5214525_5214591 chrX - chrX_5216487_5216663 chrX_5216486_5216487;chrX_5216663_5216664 chrX_5216423_5216486;chrX_5216664_5216731 40.00 NA NA NA NA NA NA 52.94 55.56 NA 40.00 33.33 NA NA NA 30.77 NA NA 38.46 42.11 NA NA NA NA NA NA NA NA NA NA NA NA NA 56.25 NA NA NA NA 38.46 NA NA 69.23 NA 36.36 NA NA NA NA 40.00 NA NA NA NA NA 50.00 NA NA NA K intron_retention CG9346 chr2R + chr2R_16901661_16901714 chr2R_16901660_16901661;chr2R_16901714_16901715 chr2R_16901418_16901660;chr2R_16901715_16901898 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA NA NA 4.55 NA NA NA K alternative_donor Hcs,I_chr3R_1303481_1304607 chr3R + chr3R_1302041_1302262 chr3R_1302185_1302262 chr3R_1302263_1303269;chr3R_1302036_1302040 86.60 NA NA 83.33 NA NA NA 87.50 90.91 NA NA 81.82 NA 83.33 NA NA NA NA 100.00 100.00 NA NA 62.50 80.00 83.33 NA 83.33 NA NA NA NA NA 83.33 87.50 100.00 NA 71.43 NA 55.56 100.00 NA 85.71 NA 83.33 NA NA NA 87.50 87.50 NA 100.00 NA NA NA 87.50 NA NA 100.00 K intron_retention gbb chr2R + chr2R_19739125_19739205 chr2R_19739124_19739125;chr2R_19739205_19739206 chr2R_19739106_19739124;chr2R_19739206_19740772 97.67 98.90 92.31 91.14 97.67 97.44 84.31 94.52 90.85 100.00 93.75 97.03 92.68 90.91 98.31 98.86 95.74 89.13 91.18 96.05 92.16 96.26 100.00 100.00 100.00 100.00 99.04 98.99 100.00 96.92 98.48 96.61 89.04 98.68 97.56 98.31 100.00 99.01 98.81 98.82 97.50 96.15 91.89 100.00 92.73 98.85 100.00 97.06 91.96 98.68 100.00 100.00 100.00 100.00 96.77 100.00 100.00 93.33 K jcn_only_AD CG5694,RI_chr2L_10229956_10231366 chr2L - chr2L_10229956_10231282;chr2L_10229956_10231394 chr2L_10229956_10231538 chr2L_10229856_10229955;chr2L_10231539_10231648 41.86 NA NA 30.00 NA NA 29.03 52.38 37.10 NA NA 41.67 59.26 42.86 NA 36.36 NA 36.36 62.86 37.93 NA NA 46.15 52.38 NA NA NA NA NA NA 45.00 NA NA 41.86 NA NA NA NA NA 31.03 NA 50.00 NA NA NA NA NA 34.48 47.17 NA NA NA NA NA NA NA NA NA K alternative_donor gw,RI_chr4_679135_679703,I_chr4_679135_680299,RI_chr4_679135_680693,I_chr4_679135_681047,I_chr4_679135_681671 chr4 - chr4_679135_681054;chr4_679135_681206 chr4_679135_681128 chr4_679035_679134;chr4_681207_681208 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 K intron_retention CG4199,I_chrX_1962457_1963822,I_chrX_1962457_1964222 chrX - chrX_1962457_1965392 chrX_1962456_1962457;chrX_1965392_1965393 chrX_1962357_1962456;chrX_1965393_1965613 1.13 0.00 1.57 4.69 1.45 0.76 1.04 2.27 0.89 0.00 0.98 1.03 0.00 0.00 1.48 1.65 0.00 0.00 0.00 2.05 0.00 0.58 0.45 1.30 0.86 0.69 1.74 3.33 2.68 1.67 3.29 5.26 1.57 1.46 1.68 1.61 1.16 0.00 0.40 1.05 2.60 1.03 0.00 1.76 1.90 0.00 1.24 1.16 1.18 1.31 0.87 0.00 0.94 1.09 1.13 0.00 1.38 1.25 K intron_retention CG9044 chr2L + chr2L_5952628_5953415 chr2L_5952627_5952628;chr2L_5953415_5953416 chr2L_5952445_5952627;chr2L_5953416_5954477 6.67 NA NA 13.04 NA NA 0.00 16.67 5.26 NA NA 0.00 NA NA 0.00 NA NA NA 6.67 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA 6.67 NA 8.33 NA NA NA NA NA NA 15.00 NA NA NA NA NA 12.50 NA NA NA K multi_cassette bl,I_chr2R_16481586_16483061 chr2R + chr2R_16483320_16492200 chr2R_16483320_16485957;chr2R_16486031_16486103;chr2R_16486200_16492200 chr2R_16485958_16486030;chr2R_16486104_16486199 chr2R_16483263_16483319;chr2R_16492201_16493124 100.00 100.00 97.78 88.31 100.00 100.00 98.28 100.00 98.75 93.94 100.00 100.00 100.00 97.37 97.78 100.00 100.00 100.00 100.00 99.17 100.00 100.00 100.00 100.00 100.00 100.00 97.92 93.10 85.42 97.30 100.00 97.37 95.24 98.57 100.00 100.00 100.00 100.00 98.33 100.00 97.83 98.91 100.00 97.56 98.15 95.38 100.00 96.10 100.00 100.00 100.00 100.00 100.00 100.00 97.87 97.73 95.92 98.78 K mutually_exclusive CG6767,I_chr3L_9679564_9680329,CREI_chr3L_9679564_9687332,I_chr3L_9680354_9682364,I_chr3L_9682549_9689638,I_chr3L_9682607_9687332,RE_chr3L_9679576_9682364,RI_chr3L_9679579_9682364 chr3L - chr3L_9679564_9687332,chr3L_9687559_9689638 chr3L_9679564_9682364,chr3L_9682549_9689638 chr3L_9687333_9687558 chr3L_9682365_9682548 chr3L_9679479_9679563;chr3L_9689639_9689685 14.29 NA NA 57.14 NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA 25.00 25.00 0.00 NA NA 0.00 0.00 NA 33.33 0.00 0.00 14.29 37.50 NA NA NA NA NA NA NA 33.33 NA 0.00 NA NA 0.00 NA 20.00 NA 50.00 K intron_retention Mes-4 chr3R - chr3R_23763060_23763152 chr3R_23763059_23763060;chr3R_23763152_23763153 chr3R_23761784_23763059;chr3R_23763153_23763562 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.89 0.00 0.00 1.72 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Aldh-III,RI_chr2R_3357578_3357636,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3356731_3356864 chr2R_3356730_3356731;chr2R_3356864_3356865 chr2R_3356615_3356730;chr2R_3356865_3357018 53.06 53.06 43.10 62.86 47.17 63.16 72.73 59.41 53.76 68.75 81.25 59.72 62.79 54.17 62.26 42.03 56.82 69.57 55.38 45.08 78.12 41.18 51.11 54.76 36.84 30.77 66.67 63.64 38.10 55.56 56.14 45.45 55.56 56.79 76.47 94.44 47.17 47.22 48.21 52.17 24.24 59.26 73.53 50.00 37.50 44.44 41.94 70.83 51.95 41.38 51.22 45.45 47.06 43.75 54.24 51.35 51.72 52.63 K alternative_donor RpL27A,E_chr2L_4457411_4457977,I_chr2L_4458058_4458120 chr2L - chr2L_4458058_4458288;chr2L_4458058_4458274;chr2L_4458058_4458162 chr2L_4458058_4458140 chr2L_4457978_4458057;chr2L_4458289_4458357 1.60 0.59 0.00 0.29 0.36 0.35 0.45 0.11 0.61 1.55 0.00 0.32 0.58 4.23 0.48 0.45 0.00 0.00 0.22 0.59 0.00 3.64 3.94 3.60 2.56 0.91 2.97 5.26 3.82 3.33 2.16 1.74 1.52 0.13 2.78 4.12 2.26 2.48 2.27 4.89 3.03 0.42 0.31 2.42 0.44 2.90 1.97 2.49 0.58 2.19 2.86 2.75 1.52 3.96 0.20 3.23 1.60 1.75 K alternative_donor achi,I_chr2R_8401767_8401934 chr2R - chr2R_8401767_8402280;chr2R_8401767_8401934 chr2R_8401767_8401848 chr2R_8401667_8401766;chr2R_8402281_8402519 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 3.57 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention NC2alpha chr2R + chr2R_17557794_17558000 chr2R_17557793_17557794;chr2R_17558000_17558001 chr2R_17557707_17557793;chr2R_17558001_17559098 0.00 0.00 0.00 2.56 0.00 7.14 2.94 0.00 0.00 NA NA 2.50 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 9.52 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 4.35 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 K intron_retention CG5630 chr3R + chr3R_16751825_16751886 chr3R_16751824_16751825;chr3R_16751886_16751887 chr3R_16751644_16751824;chr3R_16751887_16751974 1.72 1.88 2.16 3.12 0.93 0.00 2.97 2.96 2.46 3.33 1.77 0.49 3.17 1.38 1.12 0.00 0.00 0.68 0.62 2.49 1.56 7.89 3.21 0.00 7.69 4.00 2.84 0.00 4.69 7.14 7.22 0.00 0.00 1.25 0.00 14.67 2.27 1.61 2.03 2.29 4.62 1.10 0.00 1.72 0.00 1.23 0.00 4.17 1.45 2.15 2.13 2.88 0.00 1.61 2.16 1.69 0.00 0.00 K intron_retention CG5789,I_chr3R_20367337_20369421 chr3R - chr3R_20366790_20366841 chr3R_20366789_20366790;chr3R_20366841_20366842 chr3R_20366605_20366789;chr3R_20366842_20366973 0.00 0.00 0.00 4.88 0.00 0.00 0.00 2.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 3.23 0.00 NA NA 0.00 0.00 NA 0.00 3.64 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 3.39 NA 0.00 0.00 NA NA 0.00 NA NA NA K alternative_donor RhoGAPp190,I_chrX_17544272_17544863,I_chrX_17546225_17546531 chrX - chrX_17544272_17546123;chrX_17544272_17546421 chrX_17544272_17546531 chrX_17544172_17544271;chrX_17546532_17546535 60.00 65.22 68.97 60.00 77.78 55.17 60.00 48.89 65.33 78.95 74.07 54.84 58.62 65.38 65.79 59.38 62.50 55.56 40.91 45.90 66.67 67.86 31.82 12.50 44.44 53.12 35.71 87.50 80.00 58.33 64.71 25.00 71.79 65.38 56.25 37.50 36.36 33.33 33.33 73.33 70.00 62.30 60.00 65.38 66.67 69.23 0.00 78.57 63.64 25.00 31.25 26.67 70.00 0.00 51.43 28.57 NA 73.68 K multi_cassette mud chrX + chrX_14148322_14150517 chrX_14148322_14149491;chrX_14149968_14150033;chrX_14150134_14150517 chrX_14149492_14149967;chrX_14150034_14150133 chrX_14147213_14148321;chrX_14150518_14150790 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 98.25 96.97 100.00 96.77 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 100.00 100.00 K cassette scro chr3LHet + chr3LHet_224333_240692 chr3LHet_224333_231739;chr3LHet_231827_240692 chr3LHet_231740_231826 chr3LHet_224237_224332;chr3LHet_240693_240954 64.29 66.67 90.00 82.35 60.00 75.00 34.62 69.57 75.00 NA NA 56.52 75.00 56.25 60.00 68.75 71.43 63.64 92.31 70.00 83.33 55.56 41.67 45.45 44.44 53.85 46.15 NA NA 66.67 75.00 NA NA 72.73 NA NA 54.55 50.00 50.00 66.67 50.00 70.83 46.15 69.23 60.00 66.67 66.67 62.50 69.23 52.63 75.00 63.64 53.33 60.00 86.67 66.67 43.33 64.29 K jcn_only_AA CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_243585_244182;chr4_243673_244182;chr4_243639_244182 chr4_243657_244182 chr4_244183_244282;chr4_243557_243584 1.20 0.00 0.00 1.30 2.56 0.00 0.00 1.98 0.74 NA NA 3.26 1.49 0.00 0.00 1.67 4.35 NA 1.49 2.15 0.00 6.06 3.57 2.94 NA 0.00 0.00 NA NA 0.00 3.09 5.00 NA 0.98 4.00 NA NA NA NA 0.00 NA 1.20 1.96 3.70 NA 0.00 0.00 NA 0.79 0.00 3.51 NA NA 0.00 1.79 0.00 0.00 4.55 K jcn_only_AA dNAT1,CG13319,RI_chr2R_8812301_8816468 chr2R + chr2R_8803570_8805499 chr2R_8803570_8805247 chr2R_8803506_8803569 0.67 1.04 0.00 0.58 0.72 0.00 1.36 0.00 0.56 1.67 2.26 0.28 0.00 0.49 0.00 0.24 1.08 0.00 1.81 1.06 0.56 0.00 0.00 0.00 2.00 0.55 0.00 2.08 2.00 0.00 0.41 2.63 0.00 0.60 0.00 1.96 1.60 1.89 0.00 1.64 0.00 0.00 1.18 1.22 2.00 2.70 1.18 6.67 0.94 2.99 1.52 1.01 0.00 0.00 0.67 2.90 0.00 6.12 K alternative_acceptor Zyx102EF,I_chr4_1079131_1080044,I_chr4_1079946_1080044,RI_chr4_1079959_1080044,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1079915_1080044;chr4_1079959_1080044 chr4_1079978_1080044 chr4_1080045_1080072;chr4_1079859_1079914 40.82 36.84 19.05 40.82 16.67 43.75 72.50 38.46 39.66 NA 41.18 41.03 45.83 47.62 25.00 29.31 48.00 31.58 42.86 37.21 33.33 50.00 33.33 50.00 53.33 38.89 43.75 20.00 NA 36.36 36.00 27.27 33.33 38.00 41.67 70.59 50.00 60.00 50.00 45.45 33.33 42.22 33.33 35.71 30.00 50.00 50.00 50.00 45.10 81.82 50.00 53.33 33.33 87.50 40.74 30.77 27.78 23.81 K intron_retention NtR chr2R + chr2R_18017436_18017495 chr2R_18017435_18017436;chr2R_18017495_18017496 chr2R_18017269_18017435;chr2R_18017496_18017695 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.41 5.88 0.00 0.00 0.00 NA 13.04 NA 0.00 NA 0.00 0.00 NA 7.14 2.44 NA 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 1.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11710 chrX - chrX_20299022_20299077 chrX_20299021_20299022;chrX_20299077_20299078 chrX_20298827_20299021;chrX_20299078_20299199 0.00 3.45 0.00 11.43 0.00 0.00 0.00 0.00 2.13 4.35 0.00 2.22 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 2.22 2.44 4.55 4.35 0.00 9.30 6.45 6.10 0.00 0.00 0.00 11.76 0.00 3.57 5.71 0.00 0.00 5.88 0.00 4.44 0.00 NA 11.43 4.35 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 3.57 1.82 K multi_cassette CG33558,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,I_chr2R_2820149_2820628,EI_chr2R_2820947_2821570,CREI_chr2R_2832933_2850384 chr2R - chr2R_2817876_2821570 chr2R_2817876_2818567;chr2R_2820203_2820628;chr2R_2821433_2821570 chr2R_2818568_2820202;chr2R_2820629_2821432 chr2R_2817851_2817875;chr2R_2821571_2821639 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 K alternative_donor BM-40-SPARC,I_chr3R_22696095_22696231,I_chr3R_22696095_22696291,I_chr3R_22696095_22697413 chr3R - chr3R_22696095_22697647;chr3R_22696095_22696291;chr3R_22696095_22696231 chr3R_22696095_22697413 chr3R_22695995_22696094;chr3R_22697648_22697767 0.35 0.30 0.32 0.48 0.30 0.37 0.51 0.45 0.33 0.31 0.28 0.48 0.37 0.39 0.50 0.41 0.50 0.35 0.33 0.48 0.27 0.11 0.34 0.28 0.51 0.39 0.35 0.17 0.84 0.29 0.73 0.37 0.18 0.54 0.33 0.80 0.16 0.23 0.19 0.55 0.41 0.40 0.43 0.20 0.21 0.38 0.27 1.04 0.49 0.17 0.48 0.33 0.17 0.28 0.59 0.32 0.14 0.24 K intron_retention Fhos,CE_chr3L_8759730_8775647,I_chr3L_8779538_8779726 chr3L + chr3L_8782618_8783269 chr3L_8782617_8782618;chr3L_8783269_8783270 chr3L_8782571_8782617;chr3L_8783270_8783608 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 0.00 NA NA 0.00 4.17 0.00 0.00 NA NA 0.00 NA NA NA NA 7.69 0.00 0.00 NA 0.00 NA 0.00 NA NA NA 5.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA K alternative_donor CG2201,I_chr2L_21618111_21618314 chr2L - chr2L_21618111_21618708 chr2L_21618111_21618495 chr2L_21618011_21618110;chr2L_21618709_21618749 85.71 100.00 85.71 91.67 NA 75.00 90.91 91.67 85.00 NA 83.33 84.62 71.43 66.67 66.67 92.86 87.50 NA 85.71 80.00 NA 88.89 85.71 80.00 NA NA NA NA NA NA 100.00 NA 80.00 100.00 NA NA 80.00 NA NA 100.00 85.71 76.92 83.33 90.00 83.33 100.00 87.50 85.71 87.50 66.67 100.00 66.67 NA 100.00 83.33 85.71 87.50 83.33 K intron_retention EI_chr2L_13164741_13164824,Sfmbt chr2L - chr2L_13170785_13171312 chr2L_13170784_13170785;chr2L_13171312_13171313 chr2L_13169657_13170784;chr2L_13171313_13171365 0.00 0.00 NA 0.00 0.00 NA 13.79 0.00 3.39 NA 0.00 6.67 NA 5.56 0.00 0.00 0.00 0.00 0.00 6.38 0.00 NA 8.33 2.78 NA 0.00 5.56 NA 10.53 10.53 NA NA 0.00 0.00 NA 0.00 0.00 6.67 3.23 0.00 6.67 8.82 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 5.88 K intron_retention Ect4,C_chr3L_8091754_8101552,I_chr3L_8091826_8092243,I_chr3L_8098397_8101385,I_chr3L_8098758_8101738,I_chr3L_8100030_8101385 chr3L + chr3L_8100050_8101385 chr3L_8100049_8100050;chr3L_8101385_8101386 chr3L_8099116_8100049;chr3L_8101386_8101485 86.84 86.84 92.86 98.88 90.91 87.50 96.30 94.79 82.28 74.07 96.15 64.71 100.00 82.61 90.70 94.74 91.43 97.67 92.86 85.88 91.18 67.11 80.33 80.43 88.57 92.11 85.25 93.10 73.44 94.59 87.27 74.47 81.08 88.61 82.05 78.79 68.42 81.82 87.50 85.14 91.07 89.53 92.86 83.72 81.03 71.43 70.97 81.82 89.01 94.87 76.92 88.89 62.50 76.67 93.33 76.74 75.00 70.83 K intron_retention Cg25C,I_chr2L_5029811_5029873 chr2L + chr2L_5029637_5030136 chr2L_5029636_5029637;chr2L_5030136_5030137 chr2L_5029620_5029636;chr2L_5030137_5030237 0.00 NA NA 11.76 NA NA NA 0.00 0.00 NA NA NA 15.38 NA NA NA NA 0.00 0.00 4.76 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 3.85 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA 0.00 4.76 NA NA NA 7.14 NA 0.00 NA NA 0.00 K intron_retention slmb,I_chr3R_16951107_16953048 chr3R - chr3R_16946462_16946555 chr3R_16946461_16946462;chr3R_16946555_16946556 chr3R_16944973_16946461;chr3R_16946556_16946691 0.00 0.00 0.00 1.10 0.00 0.00 0.99 0.00 0.81 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention ari-1,I_chrX_18026911_18026975 chrX - chrX_18027405_18027743 chrX_18027404_18027405;chrX_18027743_18027744 chrX_18027281_18027404;chrX_18027744_18028393 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG4078,I_chrX_5644813_5644881,I_chrX_5645012_5645067,F_chrX_5650884_5651894 chrX + chrX_5644638_5644881 chrX_5644813_5644881 chrX_5644882_5644981;chrX_5644495_5644637 44.44 44.44 33.33 62.50 22.22 40.00 70.00 55.00 46.88 NA 66.67 50.00 66.67 46.15 35.71 61.54 66.67 44.44 50.00 55.00 71.43 NA 33.33 25.00 66.67 43.75 57.14 60.00 57.14 33.33 60.00 44.44 42.86 61.54 30.00 NA 40.00 16.67 25.00 47.06 NA 38.46 60.00 50.00 40.00 36.36 60.00 66.67 52.17 29.41 40.00 44.44 43.75 37.50 41.18 26.32 41.67 66.67 K alternative_acceptor Elongin-C,I_chr2R_15332885_15333223,I_chr2R_15332885_15333260,I_chr2R_15332885_15333452,I_chr2R_15333309_15333432,I_chr2R_15336252_15338966 chr2R - chr2R_15332885_15333432 chr2R_15333309_15333432 chr2R_15333433_15333532;chr2R_15332785_15332884 0.57 0.50 0.47 1.02 0.73 0.53 1.15 0.62 0.82 0.94 0.68 0.30 1.26 1.20 0.45 1.18 0.71 0.53 0.50 0.74 0.70 2.20 0.48 0.40 0.00 0.51 0.43 0.64 0.59 0.00 0.90 0.00 0.00 0.78 0.58 0.00 0.42 0.57 0.35 0.80 0.36 0.85 0.70 0.45 0.44 0.31 0.43 0.51 0.96 0.83 0.88 1.52 0.58 0.46 0.44 0.77 0.41 0.40 K intron_retention CG9339,I_chr2L_20877678_20903015,I_chr2L_20882465_20889794,RE_chr2L_20903555_20916904,I_chr2L_20903560_20918638,I_chr2L_20922613_20922685 chr2L - chr2L_20882465_20903015 chr2L_20882464_20882465;chr2L_20903015_20903016 chr2L_20882365_20882464;chr2L_20903016_20903115 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.80 0.00 0.00 0.00 0.00 0.00 1.23 2.53 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 K alternative_donor RhoGAP71E,I_chr3L_15583097_15589765 chr3L + chr3L_15582166_15582458 chr3L_15582377_15582458 chr3L_15582459_15583096;chr3L_15581999_15582165 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 100.00 100.00 98.44 100.00 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.06 100.00 100.00 100.00 100.00 100.00 100.00 99.07 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor SNF4Agamma,I_chr3R_16982134_16982890 chr3R + chr3R_16982134_16983336;chr3R_16982134_16982890;chr3R_16982134_16983218;chr3R_16982134_16983159 chr3R_16982134_16983164 chr3R_16982126_16982133;chr3R_16983337_16983376 12.50 29.41 15.79 12.00 0.00 26.67 11.11 15.00 10.87 22.22 10.00 15.79 15.00 16.67 10.53 3.12 6.25 14.29 14.29 14.29 7.69 8.33 5.26 7.14 26.67 7.14 8.33 14.29 8.33 27.27 7.69 0.00 0.00 15.38 25.00 7.69 11.11 12.50 21.43 9.09 18.18 17.50 28.57 7.14 0.00 6.25 25.00 13.04 10.64 12.50 5.88 15.38 22.22 20.00 14.29 22.22 25.00 0.00 K cassette CG7766,I_chrX_8993495_8994545,I_chrX_8991338_8991387 chrX - chrX_8993495_8995128;chrX_8992447_8995128 chrX_8993495_8994545,chrX_8992447_8994545;chrX_8994691_8995128 chrX_8994546_8994690 chrX_8992117_8992446;chrX_8995129_8995452 15.69 23.08 17.24 10.26 19.44 17.02 15.19 14.67 14.41 13.95 22.22 20.00 6.52 14.29 15.87 12.00 22.73 20.37 20.31 18.63 18.18 4.72 29.76 25.00 16.67 9.80 19.48 6.67 16.09 8.79 12.35 11.90 8.61 13.54 13.85 9.09 21.52 28.85 8.47 8.47 2.27 15.84 12.77 22.83 12.99 13.08 24.00 5.10 21.51 12.90 21.52 15.69 28.21 25.64 12.50 16.13 32.14 11.71 K jcn_only_AD prel chr2R + chr2R_5311931_5312043 chr2R_5311966_5312043 chr2R_5312044_5312420;chr2R_5311837_5311930 96.70 97.65 95.95 98.84 93.65 94.12 96.91 96.39 96.99 98.00 96.15 98.28 96.83 97.78 97.75 98.57 98.36 95.59 95.71 98.28 91.84 98.53 94.83 96.90 95.89 96.92 98.06 98.57 89.87 94.44 95.08 93.62 90.41 96.70 95.52 98.53 100.00 93.00 95.00 97.56 100.00 98.41 92.86 98.70 98.55 96.20 97.50 95.35 95.76 95.96 95.38 96.67 96.23 98.51 93.42 97.40 98.72 91.67 K jcn_only_AA CG14712,CG10535,I_chr3R_7498847_7498975 chr3R + chr3R_7477297_7477357 chr3R_7477297_7477345 chr3R_7476710_7477296;chr3R_7477358_7478498 3.10 0.00 6.06 2.47 3.33 7.55 3.41 1.82 0.93 4.76 0.00 1.20 6.25 5.00 3.17 0.80 3.03 5.13 0.00 1.74 6.82 5.56 3.80 4.55 0.00 5.56 1.30 4.44 5.17 0.00 3.23 3.57 3.92 6.67 0.00 1.85 2.08 0.00 1.92 6.33 1.92 3.42 10.64 2.90 4.35 1.92 8.70 3.60 1.04 0.00 5.88 0.00 0.00 NA 8.51 0.00 0.00 0.00 K intron_retention Moca-cyp chr3R + chr3R_24168532_24168601 chr3R_24168531_24168532;chr3R_24168601_24168602 chr3R_24168405_24168531;chr3R_24168602_24168796 0.00 0.00 0.00 4.72 0.00 2.35 0.00 0.91 0.00 0.00 0.00 0.83 1.85 1.49 0.00 0.97 0.00 0.00 0.00 0.65 0.00 0.98 0.00 2.27 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.70 0.93 3.51 0.00 0.00 0.00 0.00 0.00 0.00 2.84 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 1.98 0.00 3.17 K jcn_only_AD lin chr2R + chr2R_4802513_4802569;chr2R_4802509_4802569 chr2R_4802505_4802569 chr2R_4802570_4805741;chr2R_4802033_4802504 6.98 7.84 6.98 6.82 3.70 0.00 5.88 7.69 8.70 4.76 5.71 6.74 2.70 2.70 11.76 2.17 6.67 3.12 6.25 8.74 8.70 17.65 10.47 8.22 10.00 4.44 17.33 13.33 13.64 6.06 0.00 11.11 8.89 13.43 3.85 5.88 8.99 10.67 5.93 3.06 9.52 5.56 2.86 11.11 6.00 8.33 13.16 7.22 5.63 14.29 6.85 5.26 4.44 11.90 12.28 5.26 9.09 8.62 K jcn_only_AA l(3)82Fd,I_chr3R_1147660_1148709 chr3R - chr3R_1119093_1119783 chr3R_1119484_1119783 chr3R_1119784_1119956 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.84 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 1.25 1.19 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 1.33 0.00 0.00 1.18 0.00 1.28 0.00 0.00 0.67 1.28 1.35 0.00 0.00 0.00 0.90 0.00 0.00 0.00 K cassette CG14985,RI_chr3L_4003965_4004166,RI_chr3L_4003965_4004515 chr3L + chr3L_4003965_4004515 chr3L_4003965_4004135;chr3L_4004342_4004515 chr3L_4004136_4004341 chr3L_4003865_4003964;chr3L_4004516_4004615 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG7280 chrX - chrX_18741352_18741414 chrX_18741351_18741352;chrX_18741414_18741415 chrX_18740415_18741351;chrX_18741415_18742642 0.00 0.00 NA NA NA NA NA 5.00 5.56 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 NA NA NA 7.14 11.76 0.00 NA 0.00 0.00 0.00 5.26 NA 0.00 7.14 NA 4.17 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Papss chr3L + chr3L_19838529_19838634;chr3L_19838529_19838596 chr3L_19838529_19838611 chr3L_19838397_19838528;chr3L_19838635_19838730 73.91 NA NA NA NA NA NA NA 73.08 NA NA 66.67 NA NA NA NA NA NA NA 68.75 NA NA 80.95 NA NA NA NA NA NA NA NA NA 91.67 69.57 NA NA NA NA NA NA NA 71.43 NA NA NA 73.91 NA NA 81.82 NA 75.00 NA NA NA NA NA NA 81.08 K cassette TepII,I_chr2L_7696207_7698724,I_chr2L_7697158_7697976,I_chr2L_7697582_7697976 chr2L - chr2L_7696207_7698724;chr2L_7697582_7698724;chr2L_7697158_7698724 chr2L_7697158_7697976,chr2L_7697582_7697976,chr2L_7696207_7697976;chr2L_7698131_7698724 chr2L_7697977_7698130 chr2L_7696107_7696206;chr2L_7698725_7698824 6.06 8.51 5.97 8.70 8.89 5.00 6.52 6.90 5.67 19.23 8.00 3.33 4.00 7.02 6.67 7.41 1.47 25.53 6.56 6.25 10.81 1.00 7.79 6.90 6.52 6.25 8.57 0.00 2.78 5.45 5.38 5.26 3.12 5.77 4.08 26.47 3.70 4.17 6.12 4.00 2.04 5.79 10.00 4.48 3.85 7.58 4.55 4.92 6.25 4.44 7.25 2.70 6.06 4.35 3.00 10.71 6.12 8.06 K jcn_only_AD Akt1 chr3R + chr3R_11926502_11926621;chr3R_11924988_11926621;chr3R_11925014_11926621;chr3R_11925383_11926621 chr3R_11925318_11926621 chr3R_11926622_11926719;chr3R_11924974_11924987 37.50 NA NA 30.00 NA NA 52.00 44.74 46.43 NA NA 44.44 NA NA NA 25.00 NA NA NA 19.23 NA 12.50 51.72 26.09 NA NA 36.36 NA 38.10 NA NA NA 32.35 37.50 NA NA 53.85 NA NA 47.62 NA 31.25 NA NA NA NA NA NA 45.71 NA 6.45 NA NA NA NA NA NA NA K alternative_donor pAbp,I_chr2R_14027838_14028996 chr2R + chr2R_14028464_14028996;chr2R_14028922_14028996 chr2R_14028460_14028996 chr2R_14028997_14029096;chr2R_14028264_14028459 40.00 42.86 NA 33.33 20.00 28.57 44.44 38.89 50.00 NA NA 44.44 16.67 50.00 NA 53.85 57.14 25.00 57.14 53.85 NA 36.36 37.50 16.67 NA 60.00 61.54 36.36 44.44 NA 40.00 NA 53.85 30.00 NA NA 22.22 NA 71.43 26.67 NA 40.00 NA 57.14 NA NA NA 37.50 40.00 NA NA NA NA NA 75.00 NA 20.00 28.57 K mutually_exclusive NFAT,RI_chrX_13543535_13546911,I_chrX_13544101_13544542 chrX + chrX_13543535_13546911,chrX_13547539_13548816 chrX_13543535_13543687,chrX_13544101_13548816 chrX_13546912_13547538 chrX_13543688_13544100 chrX_13543435_13543534;chrX_13548817_13549237 93.75 94.74 93.75 94.12 92.86 93.33 93.75 92.31 97.30 96.15 95.00 96.67 95.00 92.31 95.00 93.75 92.31 93.75 93.75 98.39 100.00 94.12 96.00 95.24 94.44 92.86 83.33 87.50 90.00 87.50 93.75 90.00 80.00 90.32 90.91 93.33 97.62 95.45 93.75 93.33 71.43 97.30 100.00 96.55 78.57 87.50 91.67 92.00 97.06 87.50 95.65 92.31 90.00 80.00 94.12 88.89 88.89 87.50 K alternative_donor Atu chr3R + chr3R_1439212_1439281 chr3R_1439215_1439281 chr3R_1439282_1439345;chr3R_1439150_1439211 100.00 94.74 100.00 100.00 100.00 90.91 100.00 100.00 96.77 100.00 NA 100.00 90.91 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 97.67 96.55 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 95.45 100.00 100.00 96.30 97.14 100.00 100.00 100.00 100.00 96.77 NA 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention MED15 chr2L + chr2L_476016_476077 chr2L_476015_476016;chr2L_476077_476078 chr2L_475916_476015;chr2L_476078_476230 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA K alternative_acceptor I_chr3R_11826508_11826910,GATAe chr3R + chr3R_11842288_11842430 chr3R_11842288_11842410 chr3R_11841950_11842287;chr3R_11842431_11843364 89.90 NA NA NA NA NA 87.50 NA 90.91 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor None chrU - chrU_4029374_4029432;chrU_4029374_4029436 chrU_4029374_4029489 99.03 98.97 98.91 99.35 98.21 98.85 100.00 99.43 98.89 99.21 100.00 98.84 100.00 98.61 99.09 100.00 98.92 98.88 98.92 98.58 98.73 96.69 99.52 99.22 100.00 100.00 100.00 100.00 96.04 99.22 98.94 98.51 98.89 99.32 100.00 100.00 99.53 98.43 98.61 98.48 98.28 99.55 100.00 99.25 98.46 98.18 98.73 97.99 99.45 100.00 100.00 97.83 99.03 98.39 100.00 100.00 99.07 98.97 K intron_retention vir-1,I_chr2L_12404178_12407208,RE_chr2L_12409622_12421640,noncoding_2764,I_chr2L_12421830_12423260 chr2L - chr2L_12421830_12423260 chr2L_12421829_12421830;chr2L_12423260_12423261 chr2L_12421816_12421829;chr2L_12423261_12423360 74.47 78.57 75.00 89.83 83.33 62.50 75.00 70.37 80.43 NA 92.86 70.00 63.64 54.29 72.92 59.46 75.86 70.83 75.00 74.47 80.77 56.25 54.55 70.00 73.91 77.50 85.71 88.89 53.85 88.89 70.59 76.47 76.47 74.60 72.73 58.82 NA 87.50 NA 77.78 65.00 81.82 82.61 57.14 66.67 90.00 NA 90.00 76.06 72.22 69.23 63.64 NA NA 70.45 54.55 83.33 71.43 K jcn_only_AA I_chr2L_822032_822857,dock chr2L + chr2L_826508_829456;chr2L_826508_829421 chr2L_826508_829304 chr2L_826008_826507;chr2L_829457_829468 100.00 100.00 100.00 99.07 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.28 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 98.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 99.11 100.00 100.00 97.83 100.00 100.00 100.00 99.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 K cassette CG15611,I_chr2R_12996782_13000822 chr2R + chr2R_12996782_12997671 chr2R_12996782_12997447;chr2R_12997580_12997671 chr2R_12997448_12997579 chr2R_12996682_12996781;chr2R_12997672_12998005 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 98.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N alternative_donor e(r) chrX - chrX_8799622_8799801;chrX_8799622_8799982 chrX_8799622_8800141 chrX_8799538_8799621;chrX_8800142_8800333 97.03 97.92 98.17 96.23 98.50 96.59 97.47 96.69 96.26 97.33 99.01 96.75 98.47 95.88 95.73 96.77 96.88 97.32 96.97 94.95 96.19 97.78 98.51 97.77 96.15 95.58 96.62 95.00 92.06 98.06 98.18 94.23 97.03 96.55 97.41 96.25 98.51 98.28 97.73 94.78 96.63 97.69 95.56 97.26 91.43 95.90 97.50 87.80 97.18 97.42 97.08 98.72 97.12 97.48 96.24 98.40 97.38 90.91 K jcn_only_AA CG5646,I_chr3R_23386250_23386484,I_chr3R_23386287_23386484 chr3R - chr3R_23386250_23386484;chr3R_23386220_23386484;chr3R_23386237_23386484 chr3R_23386287_23386484 chr3R_23386485_23386584;chr3R_23386187_23386219 13.43 11.11 17.24 5.88 5.00 21.43 2.08 2.50 10.96 NA 5.00 12.50 NA 14.29 12.50 20.00 25.00 30.00 2.86 4.76 10.71 32.00 10.71 14.29 10.00 NA 12.28 14.00 15.79 15.62 13.43 24.00 4.76 10.87 13.95 15.38 11.94 10.34 9.76 34.04 15.00 19.30 25.00 12.28 20.69 15.69 13.51 30.56 13.95 15.15 15.22 10.00 28.57 8.82 11.90 11.76 7.69 NA K jcn_only_AA east,CR_chrX_1912038_1912737 chrX + chrX_1913540_1913603 chrX_1913540_1913600 chrX_1913091_1913539;chrX_1913604_1913770 62.09 63.77 58.90 71.74 58.18 57.75 65.56 77.06 62.50 62.50 59.26 57.04 62.96 53.33 59.78 58.59 71.64 63.16 59.15 62.09 65.45 56.06 60.87 65.26 49.15 51.79 64.71 53.57 48.89 62.71 56.04 72.73 60.00 62.96 56.90 55.77 66.67 63.64 64.08 55.95 64.00 68.24 71.01 68.48 67.65 53.06 57.69 59.72 73.13 67.57 58.54 59.65 60.00 64.29 64.20 65.00 50.00 51.72 K alternative_donor Ptp10D,CEF_chrX_11516219_11517862,I_chrX_11516225_11516345 chrX + chrX_11516225_11517785;chrX_11516219_11517785;chrX_11516213_11517785 chrX_11516391_11517785 chrX_11517786_11518234;chrX_11516125_11516212 71.43 NA 75.00 60.00 NA 66.67 100.00 60.00 88.89 NA 100.00 60.00 71.43 57.14 42.86 87.50 66.67 40.00 75.00 80.00 NA NA 50.00 NA NA 40.00 NA NA NA NA 71.43 NA 77.78 66.67 33.33 NA NA NA NA NA NA 76.92 100.00 100.00 NA NA NA 100.00 81.82 NA NA NA NA NA 66.67 NA NA 50.00 K intron_retention vari,I_chr2L_20792267_20794059 chr2L - chr2L_20790336_20790390 chr2L_20790335_20790336;chr2L_20790390_20790391 chr2L_20790125_20790335;chr2L_20790391_20790552 1.00 0.00 0.00 1.37 0.00 4.23 4.76 2.94 2.82 0.00 3.70 3.77 0.00 0.00 0.00 3.12 3.28 3.12 0.00 1.49 0.00 2.78 0.00 0.95 0.00 3.28 4.40 0.00 3.57 0.00 2.60 0.00 0.00 1.00 0.00 4.08 0.63 1.00 0.69 5.05 3.77 2.86 0.00 3.30 2.38 0.00 0.00 2.27 2.63 2.56 2.44 0.00 0.00 0.00 1.09 0.00 0.00 0.00 K intron_retention CG5916 chr3R + chr3R_11973393_11973464 chr3R_11973392_11973393;chr3R_11973464_11973465 chr3R_11973169_11973392;chr3R_11973465_11974096 0.00 0.00 0.00 7.41 NA 0.00 0.00 0.00 2.94 NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA NA 8.33 NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 5.56 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA K intron_retention CG7192,RI_chrX_17993756_17994097 chrX - chrX_17992545_17992611 chrX_17992544_17992545;chrX_17992611_17992612 chrX_17992463_17992544;chrX_17992612_17992679 1.63 0.00 1.54 8.05 0.00 0.00 2.50 4.05 2.05 0.00 0.00 0.84 2.38 0.00 4.88 0.00 4.55 0.00 3.39 2.16 1.85 2.22 4.26 2.78 0.00 1.92 8.86 4.88 11.90 0.00 1.27 2.27 1.98 0.00 2.94 10.53 0.00 0.00 2.73 1.17 5.94 0.83 0.00 2.30 0.79 1.28 2.78 0.00 1.63 0.00 2.35 0.00 3.45 0.00 2.20 0.00 0.00 0.62 K intron_retention CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2815768_2816013 chr2R_2815767_2815768;chr2R_2816013_2816014 chr2R_2815716_2815767;chr2R_2816014_2816113 90.00 NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA 66.67 NA 100.00 91.67 NA NA NA 88.89 NA NA 88.89 NA NA 70.00 NA NA NA 91.67 NA 84.62 92.31 NA NA NA NA NA 90.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA K intron_retention gish chr3R + chr3R_12106747_12107802 chr3R_12106746_12106747;chr3R_12107802_12107803 chr3R_12106738_12106746;chr3R_12107803_12107810 9.09 0.00 7.14 13.04 NA NA 20.00 19.23 20.00 NA NA 12.00 NA NA NA 20.00 NA NA 11.11 12.24 NA 7.14 5.88 17.65 6.67 21.43 NA 9.52 9.09 12.00 0.00 0.00 10.53 12.50 0.00 7.41 9.09 NA NA 6.67 12.50 3.85 NA 12.50 NA 0.00 NA 8.33 2.86 14.29 0.00 13.04 NA 0.00 5.88 0.00 NA 0.00 K alternative_acceptor I_chr4_247410_247797,yellow-h,R_chr4_261460_261560,I_chr4_264634_265805 chr4 + chr4_248867_249562 chr4_248867_249530 chr4_248662_248866;chr4_249563_249805 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 95.24 100.00 91.67 100.00 95.65 100.00 NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K alternative_acceptor I_chrX_1757755_1757801,Pgam5,I_chrX_1793073_1794406,RI_chrX_1795648_1795745 chrX - chrX_1766937_1767005 chrX_1766940_1767005 chrX_1767006_1767583;chrX_1766389_1766936 75.00 73.33 79.41 71.43 77.78 78.57 70.97 77.78 79.55 91.67 78.95 66.00 81.25 63.16 69.23 69.57 73.33 71.43 78.95 76.92 75.00 77.42 75.00 72.46 75.76 77.27 87.88 73.91 67.86 80.56 75.00 82.14 76.92 67.57 72.92 66.67 81.08 75.56 79.66 68.29 73.77 76.47 68.18 66.67 67.86 75.44 75.00 57.14 77.27 70.45 65.31 82.61 73.53 86.00 83.33 82.98 76.12 65.85 K jcn_only_AD Fak56D,F_chr2R_15323055_15323097 chr2R - chr2R_15319898_15321006 chr2R_15319898_15320100 chr2R_15319808_15319897;chr2R_15321007_15321146 4.45 8.33 4.00 4.26 0.00 4.76 0.00 0.00 1.35 NA 19.23 4.17 4.00 4.55 7.41 11.43 NA 0.00 5.00 4.84 NA NA 16.13 NA NA 6.25 5.71 NA NA NA 2.78 NA NA 8.57 NA NA 13.79 4.76 7.41 2.17 NA 5.56 0.00 0.00 NA 7.41 NA 4.35 1.79 3.57 NA 13.64 NA NA 0.00 NA NA 0.00 K jcn_only_AD cryptocephal,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21318417_21318484 chr2L_21318420_21318484 chr2L_21318485_21318548;chr2L_21318351_21318416 94.83 94.37 93.73 95.60 95.62 93.92 95.88 94.80 95.03 94.38 96.00 94.64 94.72 95.69 95.09 94.79 93.62 94.16 95.20 95.78 95.45 93.64 96.00 94.65 94.66 94.79 94.63 88.25 95.52 94.02 95.46 94.23 93.75 96.00 95.48 95.12 94.65 95.46 95.13 94.51 94.06 95.76 92.59 95.61 94.86 94.83 95.68 94.13 94.70 95.83 95.52 95.08 93.19 96.23 95.18 96.46 94.50 93.64 K alternative_donor RpL15 chr3LHet + chr3LHet_2398018_2398127;chr3LHet_2397925_2398127;chr3LHet_2397992_2398127;chr3LHet_2398060_2398127;chr3LHet_2397841_2398127;chr3LHet_2398002_2398127;chr3LHet_2397820_2398127;chr3LHet_2398053_2398127 chr3LHet_2397859_2398127 chr3LHet_2398128_2398454;chr3LHet_2397802_2397819 0.49 0.00 4.35 1.04 0.00 0.00 8.33 1.45 6.25 0.00 0.00 7.14 11.11 7.41 2.34 3.45 0.00 3.33 3.12 3.23 5.56 0.00 0.00 0.00 0.00 3.12 0.00 1.07 0.00 0.00 0.94 0.44 0.46 0.79 0.00 0.00 0.00 0.00 0.00 0.29 0.74 2.12 1.56 0.00 0.49 1.84 0.00 0.85 2.69 0.00 0.00 5.88 0.00 0.00 3.61 0.00 3.33 0.50 K intron_retention CG11526 chr3L - chr3L_3324637_3324699 chr3L_3324636_3324637;chr3L_3324699_3324700 chr3L_3322910_3324636;chr3L_3324700_3325601 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pkc98E chr3R + chr3R_24865795_24866817 chr3R_24865794_24865795;chr3R_24866817_24866818 chr3R_24865764_24865794;chr3R_24866818_24867147 15.00 NA NA 0.00 NA NA 35.71 13.33 25.00 NA NA 19.05 NA NA NA NA NA NA NA 15.00 NA 23.53 13.64 NA 20.00 NA NA 33.33 16.67 11.11 NA NA 22.22 14.29 NA NA 19.23 NA 0.00 15.00 NA 10.53 NA NA NA NA NA 0.00 12.50 NA NA NA NA NA NA NA NA NA K alternative_donor I_chrX_15223901_15223968,HDAC6,I_chrX_15232958_15233665 chrX + chrX_15232699_15233659;chrX_15232958_15233659 chrX_15232738_15233659 chrX_15233660_15234340;chrX_15232108_15232698 4.76 0.00 0.00 13.64 0.00 0.00 0.00 15.00 8.00 0.00 0.00 0.00 10.00 16.67 14.29 0.00 0.00 0.00 0.00 10.00 0.00 6.90 0.00 0.00 0.00 22.22 0.00 6.25 12.50 5.56 0.00 15.38 7.69 9.52 0.00 0.00 5.13 11.11 6.06 6.25 4.76 0.00 0.00 13.33 0.00 13.33 0.00 4.76 8.70 5.88 5.26 0.00 9.09 8.00 0.00 6.25 0.00 11.11 K intron_retention CG2059 chrX + chrX_7181674_7181741 chrX_7181673_7181674;chrX_7181741_7181742 chrX_7181444_7181673;chrX_7181742_7181879 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA 13.04 0.00 NA 0.00 0.00 4.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 2.27 7.41 0.00 14.29 0.00 5.56 0.00 NA 0.00 12.50 2.70 0.00 0.00 NA 0.00 NA 9.09 0.00 0.00 K intron_retention CG14054,I_chrX_1962457_1964222 chrX - chrX_1959925_1959977 chrX_1959924_1959925;chrX_1959977_1959978 chrX_1959850_1959924;chrX_1959978_1960121 100.00 NA 88.89 100.00 NA NA NA 87.50 100.00 NA 100.00 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA 100.00 NA 92.31 100.00 NA NA NA 100.00 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA K jcn_only_AD CG6724 chr2L - chr2L_10768891_10768953 chr2L_10768891_10768947 chr2L_10768644_10768890;chr2L_10768954_10769614 100.00 99.10 99.03 99.38 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.17 100.00 100.00 100.00 100.00 100.00 98.98 98.90 100.00 100.00 100.00 99.32 100.00 98.08 100.00 99.18 100.00 100.00 100.00 100.00 98.76 99.25 100.00 98.00 97.73 99.43 100.00 99.40 99.44 99.31 100.00 100.00 99.26 99.51 99.44 100.00 98.84 100.00 100.00 99.21 100.00 99.32 100.00 99.18 100.00 100.00 99.73 K jcn_only_AD Nop60B,AT25722,F_chr2R_20073291_20073744,snoRNA:Or-CD9b,snmRNA:60Cb chr2R + chr2R_20073291_20073744 chr2R_20073545_20073744 chr2R_20073745_20073751;chr2R_20073238_20073290 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 NA NA 97.14 NA NA NA 100.00 NA NA NA 100.00 NA NA 100.00 100.00 NA NA NA 96.88 NA NA 100.00 100.00 NA 100.00 NA NA NA NA NA 100.00 NA 95.24 NA NA NA 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 K intron_retention I_chr3R_17191403_17191730,noncoding_18164 chr3R + chr3R_17191403_17191725 chr3R_17191402_17191403;chr3R_17191725_17191726 chr3R_17191372_17191402;chr3R_17191726_17192060 38.10 NA NA 25.00 23.08 NA 37.50 46.15 33.33 NA NA 53.33 NA NA NA 38.89 50.00 NA NA 41.18 NA NA 35.71 NA NA NA NA 58.33 NA NA 13.16 NA NA 40.00 NA NA 33.33 NA NA NA NA 38.10 NA NA NA NA 41.67 NA 25.00 25.00 NA 38.46 NA NA NA 21.43 50.00 NA K jcn_only_AD CG14408,RI_chrX_14722065_14722693 chrX - chrX_14722065_14723168 chrX_14722065_14722693 chrX_14721965_14722064;chrX_14723169_14724380 5.56 NA NA NA NA NA NA NA 6.67 NA NA 15.00 NA NA NA NA NA NA NA 0.00 NA 6.67 8.33 4.76 NA NA NA NA NA NA NA NA 5.56 9.68 NA NA 3.85 NA NA 5.00 NA 5.71 NA NA 0.00 NA NA NA 11.54 NA NA NA NA NA NA 5.00 NA 4.17 K intron_retention Glued chr3L + chr3L_13922816_13922879 chr3L_13922815_13922816;chr3L_13922879_13922880 chr3L_13922751_13922815;chr3L_13922880_13922972 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.15 5.88 1.69 0.00 0.00 5.13 0.00 7.89 10.71 10.42 0.00 0.00 0.00 0.00 0.00 0.00 4.35 3.17 0.00 0.00 1.52 4.00 1.19 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG3632,RI_chrX_16195880_16196242 chrX + chrX_16190917_16191693 chrX_16190917_16191682 chrX_16190893_16190916;chrX_16191694_16191751 35.71 NA NA NA NA NA NA NA NA NA NA 29.41 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA 36.36 NA NA NA NA NA 27.27 NA 30.77 NA NA 66.67 NA NA NA NA NA 35.71 NA NA NA NA NA NA NA K intron_retention unc-13,RI_chr4_892852_895828,RI_chr4_894198_895828,E_chr4_894796_894871,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_894787_894871 chr4_894786_894787;chr4_894871_894872 chr4_894696_894786;chr4_894872_894971 0.00 0.00 3.70 6.67 0.00 0.00 2.54 5.56 6.76 0.00 NA 0.00 0.00 0.00 0.00 1.75 0.00 3.85 5.00 0.00 0.00 2.63 5.26 0.00 0.00 0.00 6.90 10.00 NA 0.00 3.77 0.00 0.00 6.15 0.00 2.13 0.00 0.00 0.00 0.00 0.00 6.25 0.00 4.55 NA 0.00 0.00 0.00 5.26 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention RI_chrX_502548_513324,CG13366,I_chrX_508729_508806,I_chrX_509497_513324,I_chrX_509727_511407,I_chrX_509727_511477,noncoding_21186,I_chrX_509834_511407,CRE_chrX_509851_511307,I_chrX_510004_511307,I_chrX_510004_511407,I_chrX_513176_513324,I_chrX_513519_513631 chrX - chrX_509727_511477 chrX_509726_509727;chrX_511477_511478 chrX_509715_509726;chrX_511478_511507 100.00 NA NA NA NA NA 100.00 80.00 93.75 NA NA 91.67 NA NA NA 92.31 NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA I_chr2R_5857058_5857250,I_chr2R_5857078_5857245,CG12134 chr2R + chr2R_5858927_5858984 chr2R_5858927_5858981 chr2R_5858680_5858926;chr2R_5858985_5859948 99.27 96.77 94.59 94.74 100.00 92.00 100.00 100.00 100.00 NA 100.00 95.52 100.00 100.00 100.00 100.00 100.00 97.56 97.62 98.02 100.00 NA 97.44 100.00 NA NA 100.00 93.33 100.00 NA 100.00 NA 100.00 100.00 100.00 NA 95.16 97.22 97.78 97.92 NA 100.00 100.00 100.00 100.00 96.88 100.00 95.83 98.53 96.30 95.24 95.65 96.36 92.00 97.67 NA 100.00 98.21 K jcn_only_AD ctp,I_chrX_4582351_4582483,I_chrX_4582382_4585669,I_chrX_4582627_4585669,RI_chrX_4582706_4585629,RI_chrX_4582706_4592329 chrX + chrX_4582706_4585669;chrX_4582351_4585669 chrX_4582325_4585669 chrX_4585670_4585729;chrX_4582282_4582324 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 K cassette Pkn,EI_chr2R_5143544_5143611,CI_chr2R_5143544_5146344,I_chr2R_5171635_5172166 chr2R - chr2R_5143215_5146344;chr2R_5143215_5144914 chr2R_5143215_5143333;chr2R_5143544_5144914,chr2R_5143544_5146344 chr2R_5143334_5143543 chr2R_5143018_5143214;chr2R_5146345_5146444 1.37 0.00 0.00 0.00 4.00 3.23 4.55 2.94 1.69 0.00 4.55 5.56 5.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 5.00 4.17 2.50 1.67 2.56 0.00 2.56 2.74 3.17 1.32 4.00 0.00 2.13 0.00 0.00 1.67 2.56 0.00 1.06 3.70 0.00 1.56 0.00 2.38 0.00 0.00 4.76 0.00 0.00 2.22 1.47 0.00 0.00 0.00 3.45 0.00 0.00 5.71 K cassette CG31534,I_chr3R_536075_536566 chr3R + chr3R_536099_536619;chr3R_536075_536619 chr3R_536099_536337,chr3R_536075_536337;chr3R_536443_536619 chr3R_536338_536442 chr3R_535975_536074;chr3R_536620_536666 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG31523,I_chr3R_294322_294479,RI_chr3R_294322_296218,I_chr3R_294322_297157,I_chr3R_294322_298014,I_chr3R_294322_300973,RI_chr3R_294322_300982,I_chr3R_294322_304799,RI_chr3R_298911_304354 chr3R - chr3R_294322_296835 chr3R_294321_294322;chr3R_296835_296836 chr3R_294222_294321;chr3R_296836_297508 1.69 0.63 1.93 1.28 0.00 2.02 1.55 1.80 1.31 0.00 0.00 1.23 5.08 1.81 1.72 2.08 1.44 1.00 1.13 1.48 1.52 5.56 1.60 1.75 2.46 2.41 2.08 5.00 2.88 1.83 1.10 2.22 1.44 2.18 2.73 2.61 2.22 2.61 3.11 1.13 1.50 0.92 1.00 1.35 1.07 2.41 2.42 1.58 1.31 1.69 2.59 2.02 2.60 1.68 1.95 0.00 0.00 1.10 K intron_retention CG31054,CG4849 chr3R + chr3R_23790253_23790310 chr3R_23790252_23790253;chr3R_23790310_23790311 chr3R_23789725_23790252;chr3R_23790311_23790402 0.00 0.00 0.00 10.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA K intron_retention eIF5B,I_chr3L_3429084_3443457,I_chr3L_3432366_3445364 chr3L - chr3L_3432366_3443457 chr3L_3432365_3432366;chr3L_3443457_3443458 chr3L_3432266_3432365;chr3L_3443458_3443557 0.00 0.38 0.00 0.00 0.00 0.51 0.75 0.28 0.19 0.00 0.00 0.43 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.59 0.00 0.46 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 1.03 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.42 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Dbp80 chr3LHet + chr3LHet_2543829_2543917;chr3LHet_2543829_2543887 chr3LHet_2543829_2543938 chr3LHet_2543765_2543828;chr3LHet_2543939_2543944 0.00 3.70 NA 0.00 0.00 8.33 0.00 2.33 0.00 NA NA 2.94 0.00 0.00 4.76 0.00 0.00 7.41 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA 3.45 NA NA 3.12 NA NA NA NA NA 3.85 NA 3.33 NA 2.63 NA NA 3.39 NA 0.00 NA 0.00 NA NA NA 0.00 0.00 0.00 NA K alternative_acceptor gish chr3R + chr3R_12100604_12100675;chr3R_12100604_12100709 chr3R_12100604_12100684 chr3R_12100535_12100603;chr3R_12100710_12100891 6.58 6.58 5.80 4.35 13.95 10.00 4.85 4.50 5.00 3.45 10.91 6.67 5.17 5.00 8.62 7.23 6.90 9.26 5.45 3.48 9.09 10.23 7.75 6.38 12.20 21.67 7.41 9.26 9.88 3.12 3.17 12.50 2.55 5.32 5.26 7.59 6.90 7.69 6.31 2.52 6.17 6.35 7.14 3.85 4.26 2.56 10.53 2.86 3.45 10.71 6.78 4.92 5.26 11.11 8.96 6.67 7.27 2.78 K intron_retention CG16838,I_chr3L_16125390_16125510 chr3L + chr3L_16125390_16125639 chr3L_16125389_16125390;chr3L_16125639_16125640 chr3L_16125290_16125389;chr3L_16125640_16126338 66.67 86.67 78.26 76.67 64.29 75.00 78.26 87.10 72.50 53.85 66.67 71.88 75.00 73.33 66.67 77.14 75.00 63.16 69.57 58.82 53.85 52.63 66.67 66.67 81.82 73.33 71.43 75.00 58.82 52.94 66.67 60.00 62.50 71.43 66.67 73.33 57.14 50.00 63.64 55.32 64.29 62.50 66.67 60.00 62.50 54.17 NA 52.00 70.59 88.89 62.50 63.64 41.67 NA 65.38 NA 50.00 37.50 K alternative_acceptor CG17494 chr2L + chr2L_22471985_22472618;chr2L_22471985_22472623 chr2L_22471985_22472552 chr2L_22471978_22471984;chr2L_22472624_22473865 100.00 97.83 100.00 100.00 97.78 100.00 100.00 100.00 100.00 97.06 100.00 99.18 100.00 95.83 100.00 99.24 100.00 98.41 100.00 100.00 100.00 100.00 100.00 98.25 100.00 100.00 100.00 98.33 100.00 100.00 98.72 100.00 97.27 100.00 98.36 100.00 100.00 97.50 100.00 97.90 98.61 98.50 96.67 100.00 100.00 100.00 100.00 98.03 97.92 100.00 96.20 96.15 100.00 100.00 100.00 100.00 100.00 100.00 K cassette simj,I_chr3L_10680263_10680313 chr3L + chr3L_10679362_10680337 chr3L_10679362_10680175;chr3L_10680263_10680337 chr3L_10680176_10680262 chr3L_10679064_10679361;chr3L_10680338_10680413 96.19 96.55 93.10 94.29 90.91 93.75 96.67 98.57 94.44 96.92 97.78 95.29 97.87 97.30 97.10 98.25 95.12 91.94 96.36 96.19 97.62 88.20 93.86 95.29 92.54 97.73 96.35 96.33 89.68 97.14 95.92 96.00 96.36 93.59 97.10 96.43 96.03 92.59 93.50 97.59 96.83 98.92 93.02 96.04 95.51 93.55 98.53 94.93 95.83 90.91 97.83 95.00 100.00 98.00 96.77 94.37 98.15 98.61 K intron_retention Nedd4,I_chr3L_17526753_17527450,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17526753_17527450 chr3L_17526752_17526753;chr3L_17527450_17527451 chr3L_17526665_17526752;chr3L_17527451_17527550 91.11 93.33 95.00 97.67 72.73 82.35 91.11 90.70 84.09 80.00 92.86 89.39 94.12 92.31 96.88 95.83 78.95 89.66 96.67 95.71 90.91 85.00 89.19 84.62 82.14 92.86 81.82 NA 78.26 83.33 87.88 88.89 92.31 92.16 96.30 90.62 84.62 92.86 92.86 94.59 78.57 87.72 94.44 89.47 94.12 94.44 100.00 92.59 92.31 91.67 96.67 88.89 76.92 83.33 93.94 91.67 NA 84.62 K intron_retention G-salpha60A chr2R + chr2R_19832604_19833218 chr2R_19832603_19832604;chr2R_19833218_19833219 chr2R_19832483_19832603;chr2R_19833219_19833347 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA TepIV,EI_chr2L_19548696_19549582 chr2L + chr2L_19553916_19553969;chr2L_19553916_19553975 chr2L_19553916_19553978 chr2L_19553362_19553915;chr2L_19553979_19556092 1.05 2.22 2.79 0.64 0.64 0.00 1.48 0.80 2.07 1.84 0.97 0.87 0.37 1.05 1.96 0.55 0.56 0.00 1.36 1.63 1.64 1.20 0.59 0.41 0.00 1.22 0.43 1.00 1.07 1.15 0.85 2.24 1.03 0.33 0.66 4.06 1.29 1.36 0.84 2.03 0.30 1.27 1.78 1.13 1.27 0.98 1.63 1.51 1.01 1.03 0.86 1.20 1.27 2.21 1.83 0.98 0.26 0.72 K intron_retention CG1399,I_chr2R_3574133_3574191 chr2R - chr2R_3565240_3565374 chr2R_3565239_3565240;chr2R_3565374_3565375 chr2R_3564840_3565239;chr2R_3565375_3565909 92.55 92.73 100.00 95.65 97.37 92.68 86.67 91.92 96.58 94.34 83.78 93.51 97.73 87.23 93.62 93.55 98.04 85.45 94.59 91.53 76.32 94.17 87.88 90.91 92.73 93.88 86.52 93.18 85.90 88.89 88.75 88.24 90.91 92.55 90.74 98.48 95.77 96.30 88.46 96.67 91.76 93.58 100.00 91.95 92.31 92.22 94.20 93.42 89.81 95.92 84.95 90.16 85.71 88.89 94.37 88.89 89.19 95.18 K jcn_only_AA RpL35A,I_chr3R_1292099_1292701,I_chr3R_1292104_1292512,I_chr3R_1292125_1292701 chr3R - chr3R_1292104_1292701 chr3R_1292125_1292701 chr3R_1292702_1292730;chr3R_1292047_1292103 0.13 0.15 0.15 0.16 0.16 0.00 0.13 0.20 0.15 0.06 0.10 0.09 0.10 0.11 0.25 0.37 0.13 0.20 0.09 0.12 0.03 0.00 0.09 0.30 0.15 0.22 0.14 1.16 0.05 0.15 0.20 0.00 0.32 0.10 0.00 0.00 0.08 0.16 0.11 0.17 0.59 0.10 0.24 0.00 0.05 0.19 0.15 0.00 0.27 0.08 0.11 0.13 0.10 0.00 0.10 0.16 0.14 0.00 K cassette Pli,I_chr3R_19691378_19715415 chr3R - chr3R_19691378_19715415 chr3R_19691378_19714778;chr3R_19714842_19715415 chr3R_19714779_19714841 chr3R_19691285_19691377;chr3R_19715416_19715515 100.00 NA 100.00 100.00 NA NA 91.67 90.00 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA NA 90.91 NA 90.00 90.00 100.00 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA 100.00 100.00 100.00 100.00 87.50 NA 90.00 NA 93.33 NA NA NA NA 85.71 NA 90.00 NA NA NA 85.71 NA NA NA N mutually_exclusive crol,I_chr2L_11799403_11802904 chr2L - chr2L_11799403_11802904,chr2L_11803675_11803784 chr2L_11799403_11800154,chr2L_11800323_11803784 chr2L_11802905_11803674 chr2L_11800155_11800322 chr2L_11799303_11799402;chr2L_11803785_11803898 0.00 0.00 0.00 38.71 0.00 0.00 0.00 20.00 29.63 0.00 0.00 0.00 0.00 0.00 37.50 0.00 0.00 0.00 0.00 42.31 0.00 67.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.75 41.18 46.15 39.13 0.00 0.00 33.33 0.00 0.00 0.00 0.00 0.00 61.54 0.00 11.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Dsp1,I_chrX_16228447_16229355,I_chrX_16231287_16231413 chrX + chrX_16228447_16230320 chrX_16228446_16228447;chrX_16230320_16230321 chrX_16228347_16228446;chrX_16230321_16230776 8.72 12.20 7.27 6.49 5.71 8.00 12.50 7.87 7.76 17.65 7.32 8.18 5.77 7.94 8.93 5.94 8.89 4.08 7.46 8.72 4.17 17.78 11.11 9.43 9.30 4.65 18.97 25.00 5.71 9.76 5.56 13.79 8.82 10.75 5.13 3.92 7.14 7.69 10.91 11.11 0.00 9.90 5.88 12.50 11.76 11.36 9.52 7.50 8.18 14.04 7.89 10.20 11.76 5.26 10.53 0.00 11.90 17.86 K alternative_acceptor MB8.chr3R.pasa.66,Alh,REI_chr3R_2921238_2921297,RI_chr3R_2921566_2921658,I_chr3R_2927820_2933442,RI_chr3R_2946518_2946663 chr3R - chr3R_2922973_2924040 chr3R_2923069_2924040 chr3R_2924041_2924205;chr3R_2922906_2922972 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG33129,I_chr2L_10966410_10967142,noncoding_2515,I_chr2L_10966622_10967108 chr2L - chr2L_10966622_10968104;chr2L_10966622_10968083;chr2L_10966622_10967855 chr2L_10966622_10968133 chr2L_10966522_10966621;chr2L_10968134_10968152 93.55 91.30 93.10 96.52 98.21 82.05 94.23 97.20 92.78 NA 98.33 96.64 90.57 98.44 94.19 92.92 90.00 95.31 93.90 92.98 95.65 86.36 NA NA NA 91.11 NA NA 96.00 NA 93.65 93.55 90.74 94.64 NA NA NA NA NA NA 78.57 95.92 90.74 NA 100.00 79.31 NA 93.94 91.41 NA NA 90.48 NA NA 91.78 NA 86.96 94.25 K alternative_donor slgA,I_chrX_21253735_21253820 chrX + chrX_21245768_21247146;chrX_21245849_21247146 chrX_21245487_21247146 chrX_21247147_21247693;chrX_21245405_21245486 85.16 NA NA NA NA NA NA 85.71 90.91 NA NA 84.62 NA 81.82 NA 75.00 NA NA NA 90.91 NA NA NA NA NA NA NA NA NA NA 92.31 NA NA 69.23 NA NA NA NA NA NA NA 91.67 NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG30109,CG30108,I_chr2R_13557316_13557647 chr2R + chr2R_13557138_13557647 chr2R_13557138_13557191 chr2R_13556976_13557137;chr2R_13557648_13557747 88.89 96.15 95.45 NA NA 90.48 91.43 74.42 86.96 NA NA 87.76 90.00 95.24 96.00 95.45 NA 82.35 82.76 85.71 NA NA 78.12 86.11 NA NA 86.96 NA NA 76.19 42.68 90.00 90.62 89.13 NA NA 87.10 92.86 92.86 76.92 67.65 84.21 NA 85.71 90.00 75.00 90.00 66.67 92.68 75.00 91.67 88.89 100.00 96.00 82.14 88.89 90.48 65.45 K cassette l(2)gl,I_chr2L_15712_16650,I_chr2L_17150_19884,I_chr2L_17208_18260,RI_chr2L_17213_18330,I_chr2L_17213_21135,RI_chr2L_20021_20830,I_chr2L_20974_21065 chr2L - chr2L_15712_19879 chr2L_15712_17057;chr2L_17213_19879 chr2L_17058_17212 chr2L_15612_15711;chr2L_19880_20015 100.00 100.00 100.00 100.00 95.24 95.65 97.56 100.00 100.00 100.00 100.00 98.31 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 98.46 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG32579,I_chrX_16217978_16218111,I_chrX_16218930_16219644 chrX + chrX_16217963_16218111 chrX_16217978_16218111 chrX_16218112_16218211;chrX_16217878_16217962 0.00 0.00 0.00 3.12 0.00 0.00 2.04 1.39 2.38 4.76 0.00 1.64 2.13 0.00 5.26 0.00 0.00 0.00 2.27 1.37 0.00 0.00 0.00 1.92 0.00 2.94 4.44 0.00 1.67 2.38 1.23 0.00 1.18 0.00 2.13 0.00 0.00 0.00 0.00 0.00 1.47 1.59 0.00 0.00 0.00 1.19 0.00 1.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 K jcn_only_AA lola,I_chr2R_6419625_6419686,I_chr2R_6421474_6422304,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6421474_6422354 chr2R_6421904_6422354 chr2R_6422355_6422404;chr2R_6421381_6421473 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 1.17 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.50 0.00 2.78 0.75 0.00 0.00 0.58 1.23 0.00 0.00 0.41 0.83 0.00 0.00 0.73 0.00 0.74 0.00 0.00 0.00 1.49 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG4096,I_chrX_5601534_5602019 chrX + chrX_5601534_5602019 chrX_5601534_5601593;chrX_5601968_5602019 chrX_5601594_5601967 chrX_5601528_5601533;chrX_5602020_5602119 100.00 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA 100.00 100.00 100.00 80.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 85.71 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 N cassette CG34408,I_chrX_10120689_10121004 chrX + chrX_10116620_10119223 chrX_10116620_10118951;chrX_10119093_10119223 chrX_10118952_10119092 chrX_10116359_10116619;chrX_10119224_10119749 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA RpL36,RI_chrX_522912_523358,I_chrX_522932_523360,I_chrX_522949_523360 chrX - chrX_522932_523360;chrX_522949_523360 chrX_522912_523360 chrX_523361_523436;chrX_522849_522911 97.34 98.02 98.23 98.05 96.43 96.36 82.56 96.79 97.44 97.56 93.06 98.72 94.20 97.30 97.83 97.45 95.62 93.71 93.79 97.64 95.17 95.45 97.89 97.27 94.84 67.76 97.78 95.06 97.96 93.72 96.40 96.08 97.48 97.38 95.74 97.13 97.90 99.10 97.80 97.31 92.05 97.06 94.63 99.12 97.90 96.55 98.43 98.41 96.37 98.59 98.36 97.25 99.20 98.40 97.49 98.81 97.34 98.02 K intron_retention Cyp4e2,Cyp4e1 chr2R + chr2R_4333817_4333876 chr2R_4333816_4333817;chr2R_4333876_4333877 chr2R_4333447_4333816;chr2R_4333877_4334051 1.32 1.32 2.78 2.94 4.17 0.00 2.44 1.82 0.00 0.00 0.00 4.81 6.67 3.03 0.00 0.00 0.00 0.00 2.82 2.02 0.00 0.00 0.00 0.00 3.33 1.56 2.06 8.57 0.00 0.00 4.88 0.00 1.44 2.86 5.88 0.00 1.72 0.00 1.12 0.95 0.00 2.68 5.56 0.89 4.17 2.47 3.53 0.00 3.67 2.91 1.22 1.92 0.00 0.00 2.44 0.00 0.00 0.00 K intron_retention CG8596,I_chr3L_7336128_7336203,RI_chr3L_7336707_7336767,I_chr3L_7337046_7338155,I_chr3L_7340885_7340945 chr3L - chr3L_7336711_7336767 chr3L_7336710_7336711;chr3L_7336767_7336768 chr3L_7336204_7336710;chr3L_7336768_7336867 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 3.85 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14164,CG6707 chr3L - chr3L_9886565_9886617 chr3L_9886564_9886565;chr3L_9886617_9886618 chr3L_9886283_9886564;chr3L_9886618_9886754 0.00 NA NA 9.30 NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA NA 9.68 NA 0.00 3.70 6.25 NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA NA K intron_retention CG9007,RI_chr3L_14010982_14011111 chr3L + chr3L_14010982_14011045 chr3L_14010981_14010982;chr3L_14011045_14011046 chr3L_14010882_14010981;chr3L_14011046_14013230 0.00 7.69 0.00 0.00 0.00 0.00 0.00 2.04 1.82 3.03 0.00 4.17 0.00 3.85 0.00 9.30 0.00 0.00 12.50 3.57 0.00 0.00 8.00 5.56 0.00 0.00 6.67 0.00 8.33 0.00 0.00 NA 0.00 0.00 0.00 18.52 2.78 5.26 0.00 2.70 0.00 2.08 0.00 2.38 NA 4.55 0.00 2.86 5.80 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 K intron_retention I_chrX_2036036_2037024,Pgd chrX + chrX_2039747_2041207 chrX_2039746_2039747;chrX_2041207_2041208 chrX_2039523_2039746;chrX_2041208_2042599 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 1.37 0.85 0.88 0.00 0.00 0.00 0.00 0.00 3.19 0.32 0.00 0.00 0.61 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Eps-15,I_chr2R_20660319_20660496 chr2R - chr2R_20657207_20659247 chr2R_20657206_20657207;chr2R_20659247_20659248 chr2R_20656942_20657206;chr2R_20659248_20659313 91.40 92.68 80.56 85.71 92.31 88.57 91.18 91.30 91.67 87.50 100.00 100.00 85.19 95.65 97.56 82.76 92.59 90.32 85.19 91.55 93.10 100.00 92.00 89.13 96.55 86.21 97.44 91.67 92.11 90.24 89.47 91.30 86.67 90.91 91.11 93.33 90.74 87.50 93.10 91.40 93.94 90.14 95.24 91.11 87.88 92.50 97.87 90.14 87.14 91.49 92.98 81.82 91.49 97.92 93.18 83.02 93.65 85.51 N alternative_acceptor vkg,I_chr2L_5027222_5027297,I_chr2L_5027222_5028118 chr2L - chr2L_5027204_5027351 chr2L_5027222_5027351 chr2L_5027352_5027389;chr2L_5027122_5027203 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD I_chr2R_7171366_7171418,fbl6,dare chr2R - chr2R_7176066_7176572;chr2R_7176066_7177174 chr2R_7176066_7176897 chr2R_7175150_7176065;chr2R_7177175_7177253 83.33 NA NA 81.58 NA NA 86.21 93.33 68.33 NA NA 62.16 93.33 NA 75.00 65.52 NA NA 75.86 83.33 NA NA 95.45 90.91 NA 78.26 85.71 NA NA 88.46 83.33 NA 90.00 78.05 95.45 NA 78.57 NA 85.00 81.48 NA 92.31 NA NA NA NA NA NA 72.34 NA NA 75.00 NA NA 87.80 NA NA NA K intron_retention CG31601 chr2L - chr2L_22042348_22042401 chr2L_22042347_22042348;chr2L_22042401_22042402 chr2L_22042107_22042347;chr2L_22042402_22043034 29.31 23.26 30.77 53.21 31.03 23.68 18.10 26.61 25.78 23.53 28.95 30.21 30.91 29.63 30.77 37.00 30.00 26.32 26.92 26.51 25.64 60.00 37.04 26.83 50.00 47.17 29.31 26.47 45.00 45.95 29.73 42.31 44.44 26.55 23.40 42.11 17.86 34.78 36.36 32.39 28.26 31.25 28.81 16.00 45.45 30.36 24.24 33.33 25.74 35.90 27.08 39.13 22.22 26.67 29.31 25.93 18.52 25.27 K intron_retention br,I_chrX_1517022_1518170,chrX_1531825_1532171.0,chrX_1532359_1533289.0,chrX_1533577_1534629.0,chrX_1535554_1536485.0,chrX_1539850_1540090.0,chrX_1540212_1541396.0,chrX_1544237_1547430.0,chrX_1547632_1547887.0,noncoding_21384,dor chrX + chrX_1531368_1552820 chrX_1531367_1531368;chrX_1552820_1552821 chrX_1531317_1531367;chrX_1552821_1552858 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG3419 chr2R + chr2R_20299633_20299700 chr2R_20299643_20299700 chr2R_20299701_20301588;chr2R_20299436_20299632 96.87 100.00 NA 93.10 NA NA 100.00 NA 100.00 NA 100.00 100.00 NA NA 100.00 NA NA NA NA 94.74 NA NA 94.12 97.30 91.30 NA 92.86 NA 100.00 96.43 90.48 NA NA 100.00 NA 97.73 97.67 91.43 94.74 100.00 NA 100.00 NA 90.32 NA 100.00 92.00 NA 100.00 NA 94.34 NA 93.75 95.45 96.30 95.83 100.00 NA K intron_retention CG4707 chr2R - chr2R_20492462_20492516 chr2R_20492461_20492462;chr2R_20492516_20492517 chr2R_20492085_20492461;chr2R_20492517_20492907 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 6.06 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 7.69 16.67 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG13822,RI_chr3R_19503360_19503522 chr3R + chr3R_19503360_19503577 chr3R_19503360_19503522 chr3R_19503260_19503359;chr3R_19503578_19503622 1.98 4.08 1.83 3.12 1.30 1.47 2.83 1.46 1.22 2.63 2.27 2.08 3.77 1.37 1.14 0.87 0.00 0.00 0.00 0.99 0.00 1.43 5.80 5.97 4.00 0.00 7.69 8.57 1.75 5.45 18.63 0.00 2.35 0.72 7.84 2.90 2.63 3.17 2.06 1.98 8.11 1.20 0.00 6.06 3.49 9.09 2.88 0.00 2.88 1.89 1.63 0.00 1.12 5.36 0.98 7.35 0.29 1.27 K jcn_only_AD spi,I_chr2L_19569183_19577185,I_chr2L_19569227_19572142,I_chr2L_19569227_19577173,mir-2a-2,mir-2a-1,mir-2b-2 chr2L - chr2L_19569227_19572142 chr2L_19569227_19571571 chr2L_19569127_19569226;chr2L_19572143_19572236 100.00 100.00 100.00 100.00 100.00 100.00 99.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.55 99.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA RpL22,noncoding_21234,snoRNA:Psi18S-531,snoRNA:Psi28S-2179 chrX - chrX_657025_658334;chrX_657022_658334 chrX_657019_658334 chrX_658335_658556;chrX_656593_657018 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.03 0.02 0.00 0.03 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.03 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.02 0.03 0.02 0.04 0.00 0.00 0.00 0.00 0.06 0.00 0.05 0.00 0.04 0.07 0.00 0.02 0.02 0.02 0.01 K intron_retention I_chrX_4000307_4003527,CG4857 chrX + chrX_4012313_4012388 chrX_4012312_4012313;chrX_4012388_4012389 chrX_4011997_4012312;chrX_4012389_4013050 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28.57 0.00 0.00 6.90 4.17 12.77 16.67 0.00 3.33 0.00 NA 0.00 0.00 8.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K intron_retention CG6912 chr3R - chr3R_10962502_10962563 chr3R_10962501_10962502;chr3R_10962563_10962564 chr3R_10962433_10962501;chr3R_10962564_10962631 8.18 8.05 7.63 10.28 9.62 4.10 12.04 9.72 11.11 18.18 17.39 6.74 9.30 8.18 9.16 4.02 13.56 6.87 5.50 4.61 7.61 11.76 6.85 7.95 21.62 14.74 7.19 6.78 16.22 6.94 16.92 4.60 8.99 7.84 5.63 13.79 10.67 10.34 5.33 8.00 21.57 5.83 13.70 9.09 8.11 3.92 10.48 11.11 4.65 42.86 9.40 18.18 3.85 6.25 6.21 6.98 6.58 9.47 K intron_retention CG10585 chr3L + chr3L_21021758_21021815 chr3L_21021757_21021758;chr3L_21021815_21021816 chr3L_21020914_21021757;chr3L_21021816_21022005 0.00 2.50 0.00 17.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 18.18 2.90 3.39 0.00 0.00 0.00 9.76 8.33 0.00 0.00 0.00 3.57 0.00 0.00 2.13 3.41 2.38 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 2.78 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14741 chr3R - chr3R_7900616_7900895 chr3R_7900615_7900616;chr3R_7900895_7900896 chr3R_7900181_7900615;chr3R_7900896_7901144 58.09 63.27 58.33 57.85 76.19 72.73 57.47 72.32 65.41 36.84 63.64 64.49 NA 70.45 66.04 62.20 69.86 71.67 71.19 78.16 62.26 52.54 45.95 47.73 43.75 35.71 58.57 54.55 41.84 45.45 58.82 63.64 45.45 67.44 39.39 28.00 43.08 60.87 56.90 60.00 44.44 68.97 70.45 39.29 40.48 36.96 31.58 40.66 71.93 61.11 56.25 51.72 42.22 46.67 60.00 53.85 58.82 42.86 K intron_retention l(2)gd1,Gr32a chr2L + chr2L_11109508_11110158 chr2L_11109507_11109508;chr2L_11110158_11110159 chr2L_11109356_11109507;chr2L_11110159_11110249 6.67 0.00 5.56 7.69 0.00 6.06 11.29 4.41 6.31 5.88 8.82 6.94 3.12 10.00 5.71 8.93 10.26 3.03 9.52 6.47 20.00 5.88 5.41 5.77 9.76 20.00 11.11 7.32 22.86 7.69 2.50 5.41 5.26 5.88 10.53 21.88 11.76 0.00 4.84 8.96 12.24 8.79 0.00 2.44 5.13 12.68 9.26 15.00 6.49 7.25 4.84 13.79 6.67 8.89 11.90 4.17 6.25 2.82 K intron_retention ras chrX + chrX_10638695_10638862 chrX_10638694_10638695;chrX_10638862_10638863 chrX_10638539_10638694;chrX_10638863_10638943 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG17082,I_chr2R_632143_635290,R_chr2R_642176_644740,I_chr2R_644094_644145,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_631984_636726;chr2R_632083_636726;chr2R_631907_636726;chr2R_632143_636726 chr2R_631971_636726 chr2R_636727_636891;chr2R_631902_631906 0.00 NA NA 7.14 NA NA 6.25 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K multi_cassette CG41378,I_chr2RHet_1545717_1605870,I_chr2RHet_1545717_1621473,I_chr2RHet_1545717_1621569,I_chr2RHet_1606049_1607768,RI_chr2RHet_1606049_1621284,noncoding_9480 chr2RHet - chr2RHet_1545717_1621473 chr2RHet_1545717_1605712;chr2RHet_1605787_1605870;chr2RHet_1606049_1621473 chr2RHet_1605713_1605786;chr2RHet_1605871_1606048 chr2RHet_1545666_1545716;chr2RHet_1621474_1621573 57.73 57.14 63.64 8.00 60.00 63.64 57.14 52.94 54.17 NA NA 78.26 88.89 66.67 66.67 41.67 36.36 80.00 60.00 80.95 NA 80.00 36.36 47.06 36.36 60.00 14.29 11.76 46.15 55.56 87.50 63.64 66.67 68.18 75.00 22.22 55.56 66.67 55.56 43.75 40.00 61.11 44.44 80.00 60.00 56.25 58.33 75.00 57.14 45.45 58.33 60.00 55.56 75.00 70.00 55.56 39.13 50.00 K jcn_only_AA Atg18,I_chr3L_8182683_8182941 chr3L + chr3L_8180294_8180578;chr3L_8180294_8180540 chr3L_8180294_8180586 chr3L_8180118_8180293;chr3L_8180587_8180676 1.41 1.37 1.30 3.97 0.00 0.00 4.17 0.85 0.68 5.26 3.64 0.85 1.61 1.59 0.00 0.00 1.41 3.28 2.53 0.81 2.47 1.46 0.85 0.00 1.54 0.00 1.18 0.00 1.96 3.30 2.02 0.00 2.74 0.00 4.62 0.00 1.71 0.93 0.00 4.13 0.00 1.97 1.89 1.04 2.60 4.62 0.00 2.33 0.72 0.00 4.44 2.38 7.27 1.49 0.96 1.49 1.00 1.11 K intron_retention gw,I_chr4_679135_681671 chr4 - chr4_673211_673271 chr4_673210_673211;chr4_673271_673272 chr4_672931_673210;chr4_673272_673459 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention growl chr3R + chr3R_229003_230190 chr3R_229002_229003;chr3R_230190_230191 chr3R_228731_229002;chr3R_230191_230361 0.53 0.19 0.19 0.82 0.22 0.24 0.27 0.42 0.19 0.93 0.52 0.37 0.54 0.79 0.34 1.05 0.22 1.08 0.22 0.80 0.75 2.65 0.45 0.36 0.57 0.36 0.83 1.16 0.33 0.61 0.87 0.34 0.65 0.88 0.40 0.38 0.53 0.15 0.52 0.64 1.16 0.55 0.53 0.76 1.26 0.80 0.94 1.22 0.43 0.68 0.48 0.00 0.28 0.55 0.74 0.93 0.00 0.50 K jcn_only_AD Meics chr3L - chr3L_13957114_13957254 chr3L_13957114_13957218 chr3L_13955947_13957113;chr3L_13957255_13957397 91.73 NA NA NA NA NA 95.00 88.46 86.36 NA NA 95.65 NA NA NA 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 95.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N cassette CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1525393_1526333;chr3L_1525393_1527189 chr3L_1525393_1525641;chr3L_1525704_1527189,chr3L_1525704_1526333 chr3L_1525642_1525703 chr3L_1525293_1525392;chr3L_1527190_1527240 66.67 62.50 82.35 92.00 66.67 57.14 70.83 73.08 75.86 NA 41.67 32.65 92.31 60.00 58.82 88.24 71.43 58.33 NA 64.71 70.00 50.00 91.30 60.87 50.00 22.22 88.24 NA 47.06 66.67 76.92 80.00 63.64 69.57 63.64 72.73 61.11 66.67 66.67 53.33 52.94 57.50 70.00 84.62 71.43 61.11 69.23 87.50 71.43 61.11 72.00 80.00 84.62 54.55 60.00 66.67 72.73 75.00 K intron_retention I_chr3R_11826508_11826910,GATAe chr3R + chr3R_11843929_11843986 chr3R_11843928_11843929;chr3R_11843986_11843987 chr3R_11843433_11843928;chr3R_11843987_11844317 90.00 90.91 91.67 75.00 100.00 100.00 95.00 94.74 88.64 88.89 61.54 84.62 96.55 92.31 85.00 83.33 90.91 89.47 90.48 89.47 88.89 80.00 90.00 100.00 NA 90.00 91.67 NA 66.67 100.00 92.86 NA 53.85 92.00 92.31 88.89 80.00 90.00 94.74 80.00 NA 93.55 92.31 100.00 NA NA NA 75.00 92.86 NA 78.57 88.89 NA NA 86.36 NA NA NA K jcn_only_AD CG10365,I_chr3R_19549381_19554106,I_chr3R_19554176_19554388 chr3R + chr3R_19549452_19554388;chr3R_19549381_19554388 chr3R_19549425_19554388 chr3R_19554389_19554488;chr3R_19549281_19549380 3.85 6.67 2.70 2.38 4.55 3.70 6.52 0.00 5.08 0.00 4.35 8.57 NA 4.17 0.00 2.38 0.00 0.00 5.26 9.43 4.35 NA 4.26 0.00 3.85 2.78 0.00 NA 12.50 2.38 5.88 9.09 2.44 6.06 0.00 NA 6.06 0.00 0.00 3.17 4.65 6.15 8.33 8.33 5.41 7.02 0.00 2.82 6.90 8.00 0.00 0.00 NA 0.00 2.70 0.00 NA 14.29 K alternative_donor gish chr3R + chr3R_12100598_12100709 chr3R_12100604_12100709 chr3R_12100710_12100891;chr3R_12100535_12100597 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.95 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 97.44 100.00 100.00 100.00 97.50 K jcn_only_AA pgant5,I_chr2L_5079575_5093241 chr2L - chr2L_5092899_5093444 chr2L_5092902_5093444 chr2L_5093445_5093575;chr2L_5092875_5092898 20.89 NA NA NA NA NA NA 32.00 12.50 NA NA NA NA 19.05 NA 22.73 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG12075 chrX + chrX_8763942_8764009 chrX_8763941_8763942;chrX_8764009_8764010 chrX_8763283_8763941;chrX_8764010_8766060 22.08 15.38 NA NA NA NA NA 35.29 22.73 NA NA 36.36 NA NA 30.77 41.67 NA NA NA 20.00 NA NA 13.33 38.46 NA NA NA NA NA NA 54.55 NA 11.11 13.33 NA NA 44.44 NA 21.43 25.00 NA 16.00 25.00 NA NA 18.75 NA 0.00 25.93 12.50 15.38 NA NA NA NA NA NA NA K alternative_donor CG2767,RI_chr3R_3832687_3833066 chr3R - chr3R_3832687_3833066 chr3R_3832687_3833053 chr3R_3832587_3832686;chr3R_3833067_3833166 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 96.77 98.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 97.14 100.00 96.88 100.00 97.50 100.00 97.87 100.00 97.96 100.00 98.51 100.00 100.00 100.00 100.00 100.00 97.56 98.44 100.00 100.00 100.00 96.30 100.00 97.30 100.00 100.00 98.25 99.03 K intron_retention CG3635 chr2L + chr2L_22182586_22182737 chr2L_22182585_22182586;chr2L_22182737_22182738 chr2L_22182517_22182585;chr2L_22182738_22183329 38.67 47.06 38.89 62.96 38.46 46.15 61.11 51.35 44.26 NA 41.67 34.29 26.32 37.50 50.00 56.25 33.33 44.44 35.71 45.16 41.67 23.81 41.18 53.85 38.89 37.50 45.83 NA NA NA 16.52 20.00 21.43 30.30 29.41 46.15 28.57 40.00 16.67 31.82 NA 45.95 44.00 46.67 NA 20.00 16.00 14.29 45.00 36.84 38.24 42.11 NA 31.25 40.00 33.33 30.00 31.25 K alternative_donor CG16817 chr3R + chr3R_5504371_5504441 chr3R_5504387_5504441 chr3R_5504442_5504698;chr3R_5504284_5504370 0.63 0.82 0.53 0.78 0.49 0.59 0.44 0.70 0.55 0.00 0.26 0.69 0.65 0.40 0.64 0.46 0.24 0.33 0.34 0.63 0.44 1.29 0.92 0.84 0.52 0.73 0.87 1.44 1.47 0.70 0.60 1.28 0.70 0.60 1.21 0.90 0.92 0.73 0.58 1.31 0.47 0.42 0.72 0.53 1.34 0.57 0.18 0.34 0.80 0.56 0.83 0.79 0.60 0.47 0.30 0.76 0.43 1.25 K alternative_donor glo,I_chr3R_7644679_7644739,REI_chr3R_7644679_7644932,RI_chr3R_7644683_7644880,I_chr3R_7647556_7647628 chr3R - chr3R_7644683_7644932;chr3R_7644683_7644739;chr3R_7644683_7644908;chr3R_7644683_7644743 chr3R_7644683_7644880 chr3R_7644583_7644682;chr3R_7644933_7644980 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA psq,RI_chr2R_6449696_6467831 chr2R + chr2R_6501632_6502052;chr2R_6501632_6502037 chr2R_6501632_6502058 chr2R_6501448_6501631;chr2R_6502059_6503753 0.00 0.59 0.00 0.79 0.00 0.00 1.89 0.00 0.35 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.54 0.00 1.79 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 1.74 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.65 0.97 0.00 0.00 0.00 0.00 0.00 0.00 2.63 K intron_retention Tsc1 chr3R + chr3R_19957892_19957978 chr3R_19957891_19957892;chr3R_19957978_19957979 chr3R_19956860_19957891;chr3R_19957979_19959170 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.28 100.00 100.00 100.00 95.83 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 96.88 97.87 100.00 100.00 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Mmp2,F_chr2R_5549824_5554869 chr2R - chr2R_5502478_5502867 chr2R_5502477_5502478;chr2R_5502867_5502868 chr2R_5502332_5502477;chr2R_5502868_5503008 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 4.55 0.00 0.00 NA NA 0.00 0.00 0.00 2.70 0.00 0.00 10.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 6.45 4.88 10.34 0.00 0.00 12.50 0.00 6.25 0.00 2.94 0.00 0.00 0.00 0.00 K intron_retention CG12112,CG12111 chrX - chrX_8453613_8453685 chrX_8453612_8453613;chrX_8453685_8453686 chrX_8453459_8453612;chrX_8453686_8453876 0.00 0.00 0.00 1.23 0.00 0.00 0.65 1.25 1.45 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.53 0.00 0.00 1.49 0.00 0.00 0.00 0.00 3.33 2.33 0.00 1.92 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 1.09 0.65 0.00 0.91 0.00 1.06 0.00 0.00 0.61 2.70 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.72 K intron_retention fal,I_chr3L_19289660_19290145 chr3L + chr3L_19291320_19291377 chr3L_19291319_19291320;chr3L_19291377_19291378 chr3L_19290619_19291319;chr3L_19291378_19291573 0.00 0.00 0.00 8.82 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 3.85 0.00 6.82 0.00 0.00 0.00 1.67 0.00 0.00 3.12 3.57 8.00 0.00 0.00 NA NA NA 0.00 0.00 NA 4.08 0.00 20.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 NA 0.00 0.00 0.00 1.89 0.00 6.25 0.00 NA 0.00 0.00 0.00 4.35 5.00 K intron_retention CG17233,RI_chr3L_20232898_20232962 chr3L - chr3L_20228778_20229533 chr3L_20228777_20228778;chr3L_20229533_20229534 chr3L_20228602_20228777;chr3L_20229534_20231010 63.64 62.50 64.29 58.62 55.00 48.00 67.86 70.59 54.55 73.33 55.56 46.30 73.33 65.00 51.28 94.12 73.33 53.33 50.00 54.22 64.00 90.32 55.36 52.78 61.54 67.86 65.85 52.78 79.07 61.90 66.67 86.11 75.51 56.00 61.11 60.00 57.63 54.84 66.15 65.62 87.50 53.70 72.22 63.64 80.70 68.09 63.16 77.78 56.25 74.36 58.54 55.00 64.71 56.25 64.29 62.86 75.68 76.19 K jcn_only_AA F_chr3R_7396835_7396923,wkd chr3R + chr3R_7409279_7409422 chr3R_7409279_7409409 chr3R_7409036_7409278;chr3R_7409423_7409787 1.41 0.00 0.00 0.00 2.00 2.33 0.00 0.00 0.00 2.63 6.45 1.18 1.25 0.00 0.00 0.00 0.00 0.00 1.45 1.79 0.00 1.35 1.39 4.92 0.00 1.75 3.12 0.00 2.78 5.26 5.56 1.96 0.00 0.00 2.86 1.64 1.47 1.96 0.00 3.41 1.54 1.71 2.08 1.85 1.41 0.00 4.00 1.11 2.68 0.00 2.94 2.44 0.00 0.00 2.15 0.00 5.77 1.35 K intron_retention Spase18-21 chr3R + chr3R_2484903_2484963 chr3R_2484902_2484903;chr3R_2484963_2484964 chr3R_2484725_2484902;chr3R_2484964_2485250 1.75 2.55 2.86 1.22 0.00 1.14 2.81 1.04 1.42 1.35 1.36 1.19 0.92 0.53 0.77 2.45 0.00 2.31 1.75 1.78 2.01 5.00 3.24 3.16 2.88 1.19 2.46 6.25 2.86 1.15 2.88 0.00 1.31 1.13 1.37 2.08 2.31 2.67 2.41 1.57 1.83 1.62 0.00 1.68 2.06 2.33 3.24 1.25 1.50 3.08 2.40 3.08 1.21 1.05 1.57 2.27 3.68 1.07 K alternative_donor CG12576,RI_chrX_21878289_21882347,I_chrX_21882735_21882809,I_chrX_21882735_21883407,I_chrX_21882735_21883467,I_chrX_21882735_21883620,I_chrX_21882735_21883714 chrX - chrX_21882735_21882809;chrX_21882735_21883714;chrX_21882735_21883750 chrX_21882735_21883467 chrX_21882635_21882734;chrX_21883751_21883814 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 2.13 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CSN8,I_chr2L_8365282_8365388,I_chr2L_8367210_8367311 chr2L + chr2L_8364980_8365152 chr2L_8364980_8365039;chr2L_8365105_8365152 chr2L_8365040_8365104 chr2L_8364870_8364979;chr2L_8365153_8365281 96.88 94.44 96.77 91.84 90.91 100.00 97.83 96.36 94.74 100.00 87.50 93.85 96.30 97.06 94.12 96.49 96.00 92.86 96.88 92.13 100.00 84.09 97.96 100.00 100.00 86.96 100.00 100.00 81.82 93.55 89.19 92.68 97.92 96.23 92.11 100.00 100.00 96.97 96.88 97.56 93.33 98.25 95.45 93.75 96.88 98.68 94.83 96.88 94.92 92.00 100.00 96.88 100.00 97.44 97.22 97.96 97.01 98.48 K intron_retention Crag,I_chrX_8487355_8487512,I_chrX_8494280_8494352 chrX + chrX_8486625_8487512 chrX_8486624_8486625;chrX_8487512_8487513 chrX_8486279_8486624;chrX_8487513_8487612 0.00 0.00 0.00 2.86 0.00 2.22 3.33 2.44 0.00 0.00 0.00 8.51 0.00 0.00 1.96 0.00 0.00 0.00 0.00 2.13 0.00 9.46 0.00 0.00 0.00 0.00 2.56 NA 4.55 2.70 0.00 0.00 5.08 0.00 0.00 0.00 1.82 0.00 1.41 3.57 0.00 1.19 0.00 3.45 0.00 0.00 0.00 3.30 0.00 0.00 0.00 0.00 0.00 0.00 2.27 NA 0.00 0.00 K cassette Hrb98DE,I_chr3R_24425722_24428493,I_chr3R_24426291_24426781,I_chr3R_24426737_24426805,RI_chr3R_24429041_24431183 chr3R + chr3R_24425722_24428493 chr3R_24425722_24426427;chr3R_24426918_24428493 chr3R_24426428_24426917 chr3R_24425622_24425721;chr3R_24428494_24428593 100.00 100.00 100.00 100.00 100.00 100.00 99.76 100.00 100.00 100.00 99.17 99.83 100.00 100.00 100.00 99.75 100.00 99.65 100.00 100.00 100.00 100.00 99.85 99.84 100.00 100.00 100.00 100.00 100.00 99.74 100.00 100.00 99.72 100.00 100.00 100.00 99.84 100.00 100.00 100.00 100.00 99.86 100.00 99.70 100.00 99.75 100.00 99.71 99.84 99.80 100.00 100.00 100.00 99.70 100.00 100.00 100.00 99.65 K jcn_only_AD CG5953,snoRNA:Me28S-C1237 chr2L - chr2L_16528440_16532720;chr2L_16528440_16532458 chr2L_16528440_16532707 chr2L_16527390_16528439;chr2L_16532721_16532862 15.19 NA NA NA NA NA NA 8.70 7.14 NA 21.74 0.00 NA NA NA 2.94 NA NA NA 16.67 6.25 NA NA NA NA NA NA NA NA NA NA NA NA 20.00 8.00 NA NA NA 15.00 NA NA 17.95 NA NA NA 13.89 25.00 15.62 15.38 NA NA NA NA 20.83 NA 4.55 NA 23.08 K alternative_acceptor CG5746 chr3R - chr3R_20174283_20174383 chr3R_20174286_20174383 chr3R_20174384_20174495;chr3R_20173869_20174282 97.50 93.88 100.00 100.00 96.77 97.14 100.00 98.21 97.18 96.43 100.00 98.44 97.50 100.00 95.12 96.55 100.00 91.11 97.37 97.83 96.55 92.11 100.00 100.00 97.14 97.56 100.00 97.06 97.30 95.92 96.88 100.00 96.08 96.49 95.83 97.83 98.04 97.50 98.46 98.36 89.29 98.67 96.15 97.14 87.10 97.22 100.00 96.23 98.55 94.29 96.30 100.00 100.00 100.00 100.00 100.00 100.00 90.57 K intron_retention I_chr3L_1494947_1496080,pUf68,RI_chr3L_1499880_1501350 chr3L - chr3L_1498231_1498292 chr3L_1498230_1498231;chr3L_1498292_1498293 chr3L_1496858_1498230;chr3L_1498293_1498796 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 1.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 1.33 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14782,mei-38,noncoding_21360 chrX + chrX_1372263_1375040 chrX_1372262_1372263;chrX_1375040_1375041 chrX_1371409_1372262;chrX_1375041_1375343 73.60 64.36 78.57 81.51 67.69 75.82 77.00 73.60 74.15 86.05 75.86 75.84 71.43 76.39 75.00 85.58 69.35 81.48 77.27 77.38 75.36 90.22 70.71 64.06 70.24 70.16 76.11 89.25 77.89 71.03 84.30 73.53 75.00 73.60 69.30 81.98 51.11 59.18 71.43 67.61 67.57 70.98 70.13 68.75 68.12 70.71 68.35 71.96 76.06 72.47 71.43 73.26 76.85 76.60 74.55 67.59 81.58 78.05 K intron_retention egr,I_chr2R_5970832_5970930,I_chr2R_5970999_5971058 chr2R + chr2R_5970640_5970766 chr2R_5970639_5970640;chr2R_5970766_5970767 chr2R_5970535_5970639;chr2R_5970767_5970831 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.39 0.00 0.69 0.00 0.00 0.00 0.57 0.00 0.82 0.63 0.99 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor spir,I_chr2L_20334199_20334626,I_chr2L_20336550_20339058 chr2L + chr2L_20334199_20334626 chr2L_20334199_20334620 chr2L_20334099_20334198;chr2L_20334627_20334726 100.00 100.00 98.18 98.15 96.30 97.56 100.00 98.33 98.78 100.00 97.14 98.57 100.00 100.00 100.00 100.00 100.00 97.22 97.30 98.98 100.00 99.42 98.48 100.00 100.00 100.00 97.92 90.91 98.73 98.77 100.00 98.04 99.38 98.51 100.00 98.46 100.00 100.00 100.00 99.25 97.75 100.00 100.00 98.46 98.85 97.50 100.00 99.21 100.00 98.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CkIIbeta,I_chrX_11686847_11687475,I_chrX_11687161_11687475,I_chrX_11689220_11690898 chrX + chrX_11686979_11687475 chrX_11686978_11686979;chrX_11687475_11687476 chrX_11686957_11686978;chrX_11687476_11687551 76.33 NA NA 82.35 NA NA 75.00 76.47 68.97 NA NA 92.86 80.00 75.00 69.23 95.45 75.00 NA 73.33 75.00 NA NA NA NA NA NA NA NA NA NA 76.92 NA NA 81.25 NA NA NA NA NA 100.00 NA 69.57 88.89 NA NA NA 80.00 NA 76.19 NA NA NA NA NA 69.23 NA NA NA K jcn_only_AD I_chr2L_19388570_19389922,CG17544 chr2L - chr2L_19393657_19398346;chr2L_19393657_19398334 chr2L_19393657_19398350 chr2L_19393497_19393656;chr2L_19398351_19398401 30.63 32.73 28.42 36.56 38.71 38.68 30.24 32.45 30.28 26.76 31.94 33.91 25.86 34.98 21.15 29.82 27.53 33.33 27.74 33.21 30.56 30.63 33.74 32.13 25.49 32.79 33.83 23.00 18.86 31.27 28.89 28.15 24.24 29.22 31.23 32.67 32.26 23.57 25.91 36.04 24.58 28.38 32.13 34.09 30.82 33.42 31.79 27.45 32.73 29.69 28.46 29.79 28.31 33.66 35.03 33.65 27.37 27.87 K intron_retention Stat92E,I_chr3R_16367780_16376442,I_chr3R_16367780_16377802,I_chr3R_16367815_16368548,att-ORFB chr3R - chr3R_16367815_16376442 chr3R_16367814_16367815;chr3R_16376442_16376443 chr3R_16367715_16367814;chr3R_16376443_16376542 0.00 0.00 0.00 0.00 0.00 0.00 11.11 4.44 5.80 0.00 NA 3.12 2.70 0.00 5.00 4.65 0.00 2.27 0.00 2.86 0.00 12.00 0.00 0.00 0.00 0.00 8.00 0.00 0.00 6.67 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 5.56 0.00 NA 0.00 0.00 0.00 NA NA NA 6.06 2.63 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K alternative_donor Mgat2,I_chr3R_25845406_25845472,I_chr3R_25845406_25846373 chr3R - chr3R_25845406_25847371;chr3R_25845406_25846373;chr3R_25845406_25847670 chr3R_25845406_25845472 chr3R_25845317_25845405;chr3R_25847671_25847898 7.14 5.88 5.56 8.70 16.67 6.67 11.11 11.76 7.69 20.00 11.11 12.50 12.50 7.69 9.09 5.88 12.50 8.33 6.25 10.34 10.00 31.82 4.17 4.55 7.69 7.14 12.50 6.67 8.70 5.88 5.26 0.00 7.14 4.76 7.69 4.76 5.88 7.69 5.00 7.14 5.56 7.14 9.09 4.76 5.56 5.56 7.69 3.45 3.85 8.33 4.35 8.33 0.00 7.69 5.26 7.69 10.00 7.14 N cassette CG18522,CG18519 chr3R - chr3R_11361241_11362757 chr3R_11361241_11361349;chr3R_11362279_11362757 chr3R_11361350_11362278 chr3R_11361007_11361240;chr3R_11362758_11363069 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor spi,I_chr2L_19569183_19577185,I_chr2L_19569227_19572142,I_chr2L_19569227_19577173 chr2L - chr2L_19571768_19572503 chr2L_19571768_19572499 chr2L_19571572_19571767;chr2L_19572504_19572512 93.75 93.94 92.86 87.50 NA 100.00 93.75 92.31 95.00 87.50 NA 83.87 NA 81.82 92.86 95.65 NA 100.00 100.00 88.89 100.00 100.00 95.31 94.00 94.44 91.67 96.30 NA 91.67 86.21 86.36 95.24 95.45 94.44 89.47 92.00 93.75 93.94 93.75 97.37 85.71 88.89 90.91 95.65 94.74 95.65 94.64 96.55 88.24 90.32 91.38 100.00 NA 90.48 94.12 91.67 90.00 94.44 K intron_retention CG31619 chr2L + chr2L_21711411_21712768 chr2L_21711410_21711411;chr2L_21712768_21712769 chr2L_21711315_21711410;chr2L_21712769_21712966 3.03 2.67 4.84 3.03 3.03 3.03 6.56 1.87 4.22 0.00 NA 2.78 0.00 5.88 2.78 2.27 2.94 4.76 3.17 2.16 NA 6.49 1.65 2.04 8.47 5.26 4.17 6.67 6.90 3.70 7.45 8.57 2.15 2.94 3.77 8.11 2.84 2.44 1.75 3.31 6.82 2.72 3.33 2.72 5.77 1.23 3.17 4.49 2.61 5.71 3.19 0.00 2.70 5.26 2.27 3.45 0.00 2.15 K intron_retention CG11790 chr3R + chr3R_20874326_20874386 chr3R_20874325_20874326;chr3R_20874386_20874387 chr3R_20874164_20874325;chr3R_20874387_20874512 0.00 0.00 0.00 2.27 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 N jcn_only_AA CG6199 chr3L - chr3L_11192493_11195314 chr3L_11195174_11195314 chr3L_11195315_11195440;chr3L_11192366_11192492 0.00 0.00 0.00 0.00 0.00 0.00 10.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RI_chrX_7172561_7252693,CG1677,I_chrX_7178792_7252693,Atg5 chrX - chrX_7216816_7217190 chrX_7216815_7216816;chrX_7217190_7217191 chrX_7216590_7216815;chrX_7217191_7217296 0.00 0.00 0.00 1.52 0.00 0.00 1.67 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CtBP chr3R + chr3R_8842742_8845063 chr3R_8842741_8842742;chr3R_8845063_8845064 chr3R_8842716_8842741;chr3R_8845064_8845536 63.16 54.17 55.00 59.46 80.00 70.83 78.57 66.67 70.21 NA 56.67 81.25 73.08 58.82 66.67 64.71 63.16 47.83 61.54 64.58 50.00 70.00 61.90 72.73 69.23 63.16 58.33 77.14 66.67 59.26 46.15 52.17 46.88 64.71 53.33 70.00 71.43 60.00 66.67 62.50 63.16 63.04 65.00 76.47 63.16 42.31 38.46 39.22 59.57 69.23 72.22 66.67 77.78 60.00 48.15 72.73 61.11 42.86 K intron_retention trio,I_chr3L_999683_1009321 chr3L - chr3L_1034066_1034762 chr3L_1034065_1034066;chr3L_1034762_1034763 chr3L_1033650_1034065;chr3L_1034763_1034875 22.22 21.05 13.33 34.78 NA 23.08 33.33 29.17 30.00 NA NA 31.25 29.41 29.41 27.27 37.04 20.00 36.36 17.65 21.05 NA 56.25 13.85 13.04 12.50 NA 20.00 40.00 60.00 15.62 26.32 NA 50.00 20.00 22.22 13.64 20.00 10.53 25.00 19.35 NA 30.00 22.22 11.11 NA 36.36 22.22 38.46 14.29 NA 20.00 0.00 NA NA 24.14 NA NA NA K intron_retention CG8675,Fim chrX - chrX_17181224_17181288 chrX_17181223_17181224;chrX_17181288_17181289 chrX_17180970_17181223;chrX_17181289_17181567 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 1.79 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention cana,cana_CG33695 chr2L + chr2L_11277376_11277440 chr2L_11277375_11277376;chr2L_11277440_11277441 chr2L_11277255_11277375;chr2L_11277441_11277652 0.00 NA NA 0.00 NA NA 0.00 0.00 5.00 0.00 NA 2.94 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 7.41 0.00 0.00 NA 12.90 7.14 0.00 0.00 0.00 NA 7.69 0.00 11.11 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 NA 0.00 NA 0.00 NA NA K jcn_only_AD Kdm4A chr2R - chr2R_3811118_3811191 chr2R_3811118_3811173 chr2R_3810414_3811117;chr2R_3811192_3812037 100.00 NA NA 95.45 NA NA NA NA 96.30 NA NA 96.15 NA NA NA NA NA NA NA 95.45 NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA 95.24 100.00 NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA 100.00 K intron_retention CG17683,I_chr2R_18774_18869 chr2R + chr2R_19696_19753 chr2R_19695_19696;chr2R_19753_19754 chr2R_19542_19695;chr2R_19754_20232 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 96.88 100.00 100.00 96.55 97.06 92.86 100.00 96.00 100.00 100.00 93.75 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 97.96 94.12 91.67 91.30 100.00 100.00 96.55 94.74 100.00 100.00 K intron_retention spin,I_chr2R_12013288_12013847 chr2R + chr2R_12013288_12019046 chr2R_12013287_12013288;chr2R_12019046_12019047 chr2R_12013188_12013287;chr2R_12019047_12019404 1.30 1.30 2.92 4.03 4.05 2.36 3.21 3.70 3.85 0.00 3.11 3.27 5.88 3.30 2.26 5.00 2.94 3.77 4.48 2.82 2.43 1.10 0.98 0.84 0.00 2.46 0.83 1.58 1.77 0.86 5.24 0.00 0.50 2.93 0.73 0.27 0.46 0.00 0.99 0.48 0.00 2.93 3.66 0.69 0.00 0.00 0.00 0.00 3.00 1.69 0.44 1.24 0.00 0.00 2.32 0.00 0.00 0.00 K intron_retention Smc5,I_chr3L_21566234_21566275 chr3L + chr3L_21562994_21563056 chr3L_21562993_21562994;chr3L_21563056_21563057 chr3L_21562621_21562993;chr3L_21563057_21563235 0.00 6.67 0.00 0.00 NA NA 7.69 0.00 0.00 NA 0.00 6.25 0.00 0.00 NA 3.33 NA NA 0.00 2.08 NA 0.00 3.57 9.09 0.00 0.00 7.41 NA NA NA NA NA 11.11 5.26 0.00 NA 0.00 NA 0.00 0.00 NA 3.85 NA NA NA NA 0.00 NA 2.86 0.00 4.35 7.69 NA NA 3.23 NA 0.00 NA K jcn_only_AA CG9674,I_chr3L_16785706_16785748,I_chr3L_16793055_16800660 chr3L - chr3L_16785687_16785748 chr3L_16785706_16785748 chr3L_16785749_16785848;chr3L_16785606_16785686 0.18 1.53 0.34 0.23 0.77 0.38 0.41 0.21 0.00 0.88 0.54 0.51 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.18 1.36 0.29 0.00 0.00 0.00 0.47 0.00 0.39 0.00 0.00 0.29 0.00 0.22 0.22 0.00 0.47 0.00 0.39 0.49 0.62 0.00 0.00 0.46 0.40 0.00 0.00 0.00 1.17 0.45 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.57 K intron_retention Nhe2,I_chr2L_21122390_21122912 chr2L + chr2L_21131464_21132033 chr2L_21131463_21131464;chr2L_21132033_21132034 chr2L_21131397_21131463;chr2L_21132034_21132685 21.91 NA 20.00 25.00 NA NA 17.86 14.29 10.53 NA NA 31.58 NA NA NA NA NA NA NA 23.81 NA 16.67 25.00 7.69 NA NA NA 29.17 NA NA 7.14 NA NA 28.57 NA 30.77 NA NA 29.41 25.00 NA 10.53 NA 15.38 NA NA NA NA 17.39 NA 33.33 NA NA NA NA NA NA NA K intron_retention I_chrX_8993495_8994545,Bx42 chrX - chrX_8999991_9000257 chrX_8999990_8999991;chrX_9000257_9000258 chrX_8999430_8999990;chrX_9000258_9000760 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9422,I_chr2R_2584435_2585553 chr2R + chr2R_2579742_2579797 chr2R_2579741_2579742;chr2R_2579797_2579798 chr2R_2579625_2579741;chr2R_2579798_2580104 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 NA NA 6.67 0.00 0.00 0.00 NA 0.00 NA 26.09 0.00 0.00 NA NA 7.32 6.45 16.67 0.00 4.35 0.00 1.64 NA NA 0.00 0.00 0.00 0.00 0.00 7.32 0.00 NA 0.00 2.44 5.45 0.00 3.77 0.00 5.77 0.00 0.00 0.00 0.00 9.52 0.00 0.00 0.00 K intron_retention Tango5,noncoding_22970,I_chrX_10659836_10661185 chrX - chrX_10655893_10655947 chrX_10655892_10655893;chrX_10655947_10655948 chrX_10655611_10655892;chrX_10655948_10656235 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.57 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11403,I_chrX_1132012_1132060 chrX - chrX_1131741_1131798 chrX_1131740_1131741;chrX_1131798_1131799 chrX_1131017_1131740;chrX_1131799_1131996 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 11.11 NA NA 20.00 NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 0.00 0.00 NA NA NA NA NA NA NA K intron_retention CG3523 chr2L + chr2L_3067328_3067388 chr2L_3067327_3067328;chr2L_3067388_3067389 chr2L_3067184_3067327;chr2L_3067389_3067982 0.35 0.36 0.55 0.45 0.25 0.55 0.47 0.51 0.45 0.00 0.24 0.47 0.14 0.57 0.65 0.51 0.54 0.45 0.34 0.34 0.41 0.34 0.31 0.31 0.45 0.28 1.21 2.21 0.21 0.21 0.07 0.36 0.20 0.43 0.00 0.60 0.25 0.21 0.18 0.39 0.33 0.33 0.23 0.45 0.17 0.53 0.44 0.00 0.55 0.36 0.21 0.26 0.48 0.29 0.32 0.40 0.26 0.35 K intron_retention Dhc64C chr3L - chr3L_4811670_4812056 chr3L_4811669_4811670;chr3L_4812056_4812057 chr3L_4811552_4811669;chr3L_4812057_4812124 1.06 NA 11.11 14.29 0.00 NA 3.85 7.69 2.82 NA 9.09 5.00 23.81 0.00 0.00 2.13 8.33 3.85 3.23 5.26 0.00 0.00 5.00 0.00 0.00 9.09 5.26 10.00 NA 0.00 4.35 NA 0.00 4.44 0.00 0.00 4.35 NA 0.00 15.15 0.00 9.76 0.00 0.00 0.00 0.00 0.00 8.82 0.00 0.00 0.00 4.55 NA NA 0.00 NA 0.00 0.00 K intron_retention Pmi,PGRP-LD chr3L + chr3L_5774098_5774650 chr3L_5774097_5774098;chr3L_5774650_5774651 chr3L_5773937_5774097;chr3L_5774651_5774822 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 92.86 NA 100.00 88.24 100.00 NA NA 100.00 NA NA 87.50 100.00 NA NA NA 100.00 NA 100.00 100.00 NA 100.00 NA NA NA NA NA 90.00 100.00 87.50 100.00 90.91 91.67 NA NA 90.91 NA 90.00 100.00 NA K alternative_donor Dsp1,I_chrX_16231287_16231413 chrX + chrX_16227752_16228333;chrX_16228273_16228333;chrX_16227804_16228333;chrX_16227797_16228333 chrX_16227677_16228333 chrX_16228334_16228446;chrX_16227667_16227676 5.88 6.90 3.45 7.32 9.52 16.00 6.67 10.17 4.17 5.56 5.56 6.45 2.70 6.06 7.14 8.06 3.57 3.70 7.14 9.72 10.53 7.69 1.96 3.45 3.23 4.17 2.56 0.00 8.70 3.33 0.00 14.29 16.67 14.29 0.00 0.00 6.67 5.88 5.88 8.16 8.33 6.90 3.33 2.86 0.00 5.26 4.76 7.14 6.35 14.81 0.00 3.85 0.00 6.67 8.82 4.76 5.00 6.67 K jcn_only_AD CG6353 chr3R - chr3R_17488466_17488533 chr3R_17488466_17488531 chr3R_17488441_17488465;chr3R_17488534_17488585 100.00 NA 97.22 100.00 100.00 100.00 100.00 100.00 100.00 95.00 94.12 100.00 96.15 95.83 100.00 100.00 NA 100.00 100.00 98.95 100.00 91.43 100.00 NA NA 95.24 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 NA 97.06 95.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 96.30 100.00 97.14 100.00 100.00 100.00 97.44 100.00 100.00 96.77 100.00 98.65 K alternative_donor Tango5,noncoding_22970,I_chrX_10659836_10661185 chrX - chrX_10656468_10658202;chrX_10656468_10658117 chrX_10656468_10658389 chrX_10656442_10656467;chrX_10658390_10658400 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor smid,I_chr3L_7375166_7375310,I_chr3L_7375435_7375508 chr3L + chr3L_7375425_7375486 chr3L_7375435_7375486 chr3L_7375487_7375574;chr3L_7375335_7375424 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 98.81 100.00 100.00 98.44 100.00 96.00 100.00 98.46 100.00 100.00 100.00 98.78 100.00 100.00 100.00 100.00 100.00 97.22 98.00 100.00 100.00 100.00 100.00 100.00 98.00 100.00 96.00 100.00 98.36 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 98.48 100.00 100.00 97.30 95.83 100.00 100.00 96.88 97.14 100.00 K alternative_donor CG14939,RI_chr2L_11812683_11813150 chr2L - chr2L_11812683_11813633;chr2L_11812683_11813724 chr2L_11812683_11813150 chr2L_11812583_11812682;chr2L_11813725_11813792 4.00 4.35 4.35 4.17 0.00 3.33 3.92 3.45 2.63 0.00 3.92 2.70 0.00 4.00 2.38 2.04 6.06 2.78 2.27 3.37 2.00 6.67 11.11 8.33 20.00 2.86 7.69 18.18 6.25 10.00 2.27 5.00 13.04 3.80 NA 20.00 3.33 6.25 5.56 6.67 12.50 3.85 2.78 0.00 3.33 12.50 9.09 4.55 2.78 9.09 16.67 5.56 NA NA 2.38 NA 0.00 5.26 K intron_retention CG7956 chr3R + chr3R_17348755_17348809 chr3R_17348754_17348755;chr3R_17348809_17348810 chr3R_17348526_17348754;chr3R_17348810_17349230 0.00 0.00 0.65 0.79 0.89 0.88 0.57 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 1.94 1.10 0.00 0.00 1.57 0.98 0.89 0.99 1.43 0.00 0.00 1.30 1.09 0.00 0.00 0.00 0.00 1.68 0.00 3.03 0.00 1.15 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention PRL-1,I_chr2L_16247385_16247503,I_chr2L_16250028_16250080 chr2L - chr2L_16247385_16248601 chr2L_16247384_16247385;chr2L_16248601_16248602 chr2L_16247285_16247384;chr2L_16248602_16248768 1.07 1.33 0.00 1.49 0.00 1.14 1.36 1.41 2.00 0.00 1.83 1.11 3.40 1.54 1.44 1.24 0.00 1.09 0.44 0.89 1.64 2.27 1.67 2.04 1.71 0.57 1.53 1.98 0.00 0.00 0.96 0.00 1.69 1.70 0.78 1.47 0.00 1.32 0.00 1.00 1.23 0.81 1.28 0.00 0.00 0.00 0.81 0.00 1.07 3.25 0.88 0.00 0.84 0.00 1.77 0.00 0.00 0.00 K intron_retention drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389597_9389757 chr2R_9389596_9389597;chr2R_9389757_9389758 chr2R_9389497_9389596;chr2R_9389758_9389851 97.87 95.00 92.31 97.87 93.33 92.86 97.87 96.77 98.39 100.00 100.00 97.87 100.00 100.00 96.67 97.96 100.00 95.45 97.56 92.59 100.00 100.00 94.44 100.00 100.00 96.15 100.00 100.00 100.00 100.00 90.32 100.00 98.00 98.21 95.24 100.00 100.00 100.00 95.00 96.55 100.00 100.00 96.00 97.50 92.31 96.55 96.88 100.00 97.14 100.00 96.88 92.00 100.00 100.00 97.37 94.74 96.88 100.00 K intron_retention CG31635,I_chr2L_6639349_6639396,I_chr2L_6646948_6648945 chr2L - chr2L_6635407_6635652 chr2L_6635406_6635407;chr2L_6635652_6635653 chr2L_6634782_6635406;chr2L_6635653_6637024 11.43 NA NA NA NA NA NA NA 12.50 NA NA 35.71 NA NA 0.00 NA NA NA NA 12.50 NA NA NA 0.00 NA NA 6.25 14.29 NA NA NA NA NA NA NA NA 11.76 NA 17.65 NA NA 5.26 NA 0.00 11.11 NA 0.00 NA NA 13.64 NA NA NA NA NA NA NA NA K cassette DppIII,CG7352 chr3R + chr3R_4170206_4170814 chr3R_4170206_4170530;chr3R_4170746_4170814 chr3R_4170531_4170745 chr3R_4170198_4170205;chr3R_4170815_4171121 45.74 44.62 30.51 43.31 40.00 43.55 53.27 44.35 45.65 41.67 59.09 45.74 65.62 49.15 39.47 38.46 38.46 57.69 34.25 65.66 57.50 44.00 41.77 57.14 30.56 15.79 67.69 57.32 40.00 50.00 42.67 61.76 55.36 40.71 44.23 44.68 48.57 49.09 58.82 52.00 47.37 38.84 34.38 46.30 51.28 50.98 46.51 46.88 31.21 46.81 62.67 41.67 42.86 56.76 39.73 38.71 57.50 51.06 K jcn_only_AA CG10600,I_chr2L_18836445_18836522,RI_chr2L_18838793_18838882 chr2L - chr2L_18838793_18838882 chr2L_18838796_18838882 chr2L_18838883_18838982;chr2L_18838693_18838792 98.36 100.00 98.33 98.75 100.00 98.15 98.63 100.00 99.19 100.00 97.92 97.52 97.62 97.73 93.18 98.51 100.00 97.62 100.00 100.00 100.00 97.12 96.47 100.00 100.00 100.00 100.00 100.00 97.30 98.61 97.44 96.77 98.98 100.00 100.00 98.48 98.90 96.15 97.18 98.26 97.50 98.28 100.00 98.44 100.00 97.96 100.00 100.00 98.36 93.48 97.33 96.97 97.44 91.43 96.72 96.88 92.86 95.74 K intron_retention Orc1,I_chr2R_3415482_3418090 chr2R - chr2R_3410779_3410841 chr2R_3410778_3410779;chr2R_3410841_3410842 chr2R_3409905_3410778;chr2R_3410842_3411720 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 4.35 0.00 NA 7.41 NA NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11009,I_chr3L_12844823_12845526,I_chr3L_12845441_12845526 chr3L + chr3L_12844823_12845331 chr3L_12844822_12844823;chr3L_12845331_12845332 chr3L_12844723_12844822;chr3L_12845332_12845377 0.00 0.00 5.13 0.00 0.00 0.00 12.50 4.17 6.35 0.00 0.00 0.00 3.03 0.00 2.38 2.33 0.00 0.00 3.70 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.64 1.92 0.00 0.00 0.00 0.00 0.00 2.00 1.85 3.12 0.00 0.00 0.00 0.00 0.00 2.17 8.70 0.00 0.00 2.86 NA 0.00 4.65 0.00 0.00 0.00 K intron_retention scu,RhoGAP16F chrX + chrX_17988788_17989117 chrX_17988787_17988788;chrX_17989117_17989118 chrX_17988615_17988787;chrX_17989118_17990486 57.73 63.64 NA NA 35.71 41.67 53.85 57.14 41.18 NA NA 33.33 NA 50.00 80.00 70.59 NA 90.00 NA 65.00 NA 63.64 50.00 54.55 NA NA 64.29 NA NA 50.00 47.37 NA NA NA NA NA 70.00 NA 58.33 64.71 NA 47.62 NA NA NA 60.00 NA 58.33 50.00 NA 66.67 NA NA NA 46.15 NA 58.33 NA K intron_retention CG8636 chrX - chrX_2504216_2504278 chrX_2504215_2504216;chrX_2504278_2504279 chrX_2503175_2504215;chrX_2504279_2504526 0.41 0.62 0.00 0.90 0.00 0.48 0.37 0.58 0.32 0.00 0.00 0.23 0.00 0.49 0.53 0.30 0.00 0.56 0.24 0.17 0.40 1.62 0.44 0.58 0.91 0.39 1.07 2.24 6.77 0.00 0.47 0.00 0.00 0.78 0.25 0.39 0.45 0.33 0.27 0.55 0.83 0.42 0.29 0.25 0.20 0.30 0.56 0.95 0.48 0.62 0.41 0.82 0.31 0.61 0.17 0.32 0.71 5.26 K jcn_only_AD scu,RhoGAP16F chrX + chrX_17988131_17989117;chrX_17987638_17989117;chrX_17988127_17989117 chrX_17987656_17989117 chrX_17989118_17990486;chrX_17987544_17987637 1.41 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 2.82 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 4.55 NA NA NA NA NA NA NA NA NA N alternative_donor CG17255,I_chrX_10366177_10366615,RI_chrX_10366177_10367270 chrX - chrX_10366177_10367360;chrX_10366177_10367201;chrX_10366177_10367458;chrX_10366177_10368085;chrX_10366177_10366615 chrX_10366177_10367270 chrX_10366077_10366176;chrX_10368086_10368118 5.41 7.69 2.60 6.84 3.85 6.25 8.51 6.61 8.57 6.56 5.08 6.62 4.17 7.06 6.06 5.88 2.70 3.28 7.07 5.65 3.70 3.28 9.33 7.06 4.44 3.30 8.22 6.78 2.94 8.33 2.35 1.69 4.86 9.84 4.41 3.12 5.41 5.36 4.76 4.69 4.41 8.72 7.58 5.56 3.64 3.61 3.12 3.12 8.57 4.44 7.32 10.53 2.94 9.52 4.67 8.33 6.06 2.56 K intron_retention hkl chr2L + chr2L_19047048_19047151 chr2L_19047047_19047048;chr2L_19047151_19047152 chr2L_19046215_19047047;chr2L_19047152_19047361 0.00 0.00 0.00 1.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 N jcn_only_AD CG31156,F_chr3R_18435204_18436237,EFI_chr3R_18436373_18436443 chr3R - chr3R_18435204_18436443 chr3R_18435204_18435694 chr3R_18435104_18435203;chr3R_18436444_18436543 0.00 NA 0.00 0.00 NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA 32.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA 0.00 0.00 NA K alternative_acceptor gcl,I_chr2R_4611970_4612145,I_chr2R_4614277_4614332 chr2R + chr2R_4611970_4614119 chr2R_4611970_4612145 chr2R_4611870_4611969;chr2R_4614120_4614231 0.00 NA NA 0.00 NA NA 10.00 5.26 0.00 NA NA 4.76 0.00 NA NA 4.55 NA 0.00 0.00 0.00 NA 5.88 0.00 NA NA 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA NA NA 0.00 NA 0.00 0.00 K alternative_donor Mtor,I_chr2R_7747557_7747819 chr2R + chr2R_7747557_7747819 chr2R_7747569_7747819 chr2R_7747820_7747919;chr2R_7747457_7747556 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.11 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.40 98.68 100.00 100.00 100.00 98.18 100.00 97.30 100.00 100.00 100.00 100.00 98.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.91 100.00 100.00 100.00 100.00 98.55 100.00 100.00 100.00 100.00 100.00 100.00 98.55 98.68 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2816013;chr2R_2816342_2816577;chr2R_2816779_2817459;chr2R_2817604_2817753 chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817460_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 50.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG2310,I_chr3R_25318474_25319142 chr3R - chr3R_25318474_25319136;chr3R_25318474_25319163;chr3R_25318474_25319142;chr3R_25318474_25318925;chr3R_25318474_25318971;chr3R_25318474_25319004;chr3R_25318474_25319167 chr3R_25318474_25319093 chr3R_25318374_25318473;chr3R_25319168_25319224 12.81 7.66 22.46 18.83 9.38 15.90 15.87 1.90 9.52 6.12 21.84 18.38 13.61 21.36 13.18 19.31 12.81 15.15 12.78 15.96 27.59 9.56 9.25 7.54 12.07 20.50 6.53 10.14 17.43 9.03 19.18 15.74 30.33 14.81 14.13 10.09 4.57 9.60 8.43 15.49 38.46 12.80 18.18 9.97 24.21 19.28 7.96 37.06 11.06 8.42 8.91 10.19 11.99 12.77 14.78 9.52 10.35 24.55 K intron_retention I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545615_17545850 chr2R_17545614_17545615;chr2R_17545850_17545851 chr2R_17545613_17545614;chr2R_17545851_17545985 0.00 0.00 0.00 4.17 0.00 0.00 2.63 0.00 2.17 NA 3.12 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA NA 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 NA NA NA NA NA NA NA 1.85 5.26 NA 0.00 NA NA NA 3.23 NA NA NA 0.00 NA 3.39 NA 0.00 0.00 K jcn_only_AD CG33558,I_chr2R_2813804_2817753,I_chr2R_2814327_2817753,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2816779_2817459;chr2R_2816779_2817327 chr2R_2816779_2817354 chr2R_2816679_2816778;chr2R_2817460_2817510 2.63 3.57 0.00 1.79 NA 0.00 2.04 14.89 3.57 1.82 0.00 3.92 7.41 5.88 3.39 6.98 0.00 0.00 2.33 2.20 2.63 1.28 0.00 3.12 0.00 4.00 9.76 NA 0.00 5.32 2.00 3.85 3.03 1.32 1.56 3.12 4.05 0.00 2.42 10.00 6.38 0.00 5.26 1.69 2.13 3.92 2.00 3.80 5.88 3.23 0.00 3.23 4.00 4.00 5.41 0.00 0.00 2.53 K intron_retention CG5594,CG2812 chr2R + chr2R_19795771_19795996 chr2R_19795770_19795771;chr2R_19795996_19795997 chr2R_19795677_19795770;chr2R_19795997_19796154 100.00 100.00 100.00 98.04 100.00 95.24 100.00 100.00 98.61 88.89 100.00 100.00 100.00 100.00 96.43 98.18 100.00 100.00 100.00 100.00 96.15 92.31 100.00 93.33 91.67 100.00 100.00 100.00 100.00 92.31 91.43 100.00 100.00 96.15 93.75 100.00 100.00 100.00 100.00 96.77 NA 98.00 100.00 100.00 100.00 94.44 100.00 100.00 98.04 100.00 96.43 100.00 100.00 90.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG17838,I_chr3R_16625404_16631668 chr3R + chr3R_16628274_16631671 chr3R_16628274_16631668 chr3R_16628255_16628273;chr3R_16631672_16631768 95.72 100.00 95.00 97.50 NA NA NA NA 97.06 95.45 NA 91.30 NA NA NA NA NA NA NA 93.33 NA NA 93.55 NA NA NA 86.96 NA 100.00 NA NA NA 94.44 84.62 NA 100.00 86.67 NA 100.00 100.00 NA 100.00 NA 85.71 NA NA NA 96.00 100.00 NA NA 86.36 NA NA NA NA NA 100.00 K intron_retention RpS9,E_chr3L_9503090_9504155,E_chr3L_9503259_9504163,I_chr3L_9504402_9504516 chr3L - chr3L_9503259_9503564 chr3L_9503258_9503259;chr3L_9503564_9503565 chr3L_9503159_9503258;chr3L_9503565_9503751 0.73 0.61 0.36 0.55 0.41 0.29 0.54 0.50 0.43 1.01 0.44 0.39 0.57 0.42 0.27 0.40 0.41 0.34 0.46 0.38 0.42 2.46 1.21 0.99 1.09 0.41 1.34 2.49 0.66 1.10 2.87 0.85 0.73 0.41 1.01 0.96 0.92 0.92 1.02 0.78 0.76 0.50 0.47 1.31 0.63 0.90 0.90 0.83 0.92 1.04 1.57 1.05 0.50 0.90 0.49 1.11 1.36 0.36 K alternative_acceptor CG6912 chr3R - chr3R_10962499_10962563 chr3R_10962502_10962563 chr3R_10962564_10962631;chr3R_10962433_10962498 87.21 87.76 83.82 88.14 89.66 83.10 84.75 88.31 84.51 83.33 92.00 85.19 87.37 88.33 84.42 94.23 87.50 88.73 81.54 84.15 90.38 76.47 87.18 79.63 94.44 91.67 87.23 84.38 89.47 85.37 90.91 87.76 84.31 90.70 97.06 90.00 88.64 90.32 87.80 88.41 84.62 84.17 82.93 85.42 75.00 89.09 86.67 77.27 90.07 NA 80.56 95.65 90.48 83.64 83.53 85.71 81.32 70.97 K alternative_donor CG32666 chrX + chrX_11387231_11387740 chrX_11387419_11387740 chrX_11387741_11388032;chrX_11387203_11387230 80.00 NA NA NA NA NA 80.00 NA 77.78 NA NA 75.00 NA NA NA 85.71 NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA 77.78 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 88.89 NA NA NA NA NA NA NA NA NA K alternative_acceptor RI_chrX_8468338_8469380,I_chrX_8468338_8477573,CG12065,CE_chrX_8469528_8477573 chrX + chrX_8468441_8469386;chrX_8468441_8469383 chrX_8468441_8469380 chrX_8468351_8468440;chrX_8469387_8469480 40.85 41.46 37.21 43.64 31.58 39.47 40.54 36.49 42.98 42.42 50.00 43.06 28.21 38.10 46.34 38.64 48.84 48.39 40.43 40.00 43.24 36.45 42.86 39.06 37.93 47.50 38.71 42.31 48.57 35.19 42.37 40.74 34.21 40.85 39.02 33.33 38.89 40.48 34.15 42.31 50.00 39.53 43.90 48.33 42.31 39.58 39.68 47.50 45.83 40.82 41.94 41.51 44.44 45.83 40.00 46.81 42.19 39.13 K jcn_only_AA Cbp80,I_chrX_4545969_4549703,I_chrX_4551105_4551157 chrX + chrX_4551105_4551173 chrX_4551105_4551157 chrX_4551005_4551104;chrX_4551174_4551257 1.05 2.15 1.43 1.56 0.00 3.39 0.00 0.78 1.50 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 1.35 1.18 0.00 1.72 1.54 1.89 0.00 0.00 0.00 2.48 1.67 0.00 0.00 9.09 0.00 1.18 1.83 2.00 1.43 1.15 3.06 1.82 1.16 1.59 1.85 0.00 0.00 0.00 1.05 0.00 1.82 0.72 0.85 1.39 0.00 1.10 0.00 1.08 0.95 0.76 1.35 K alternative_acceptor Pld,I_chr2R_2130639_2136916,RI_chr2R_2138358_2141112 chr2R + chr2R_2129606_2130126 chr2R_2129606_2130035 chr2R_2129572_2129605;chr2R_2130127_2130224 100.00 NA 100.00 NA NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA NA 88.89 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA K alternative_acceptor mRpL20,RI_chr3L_13010445_13010503,RI_chr3L_13010729_13010775 chr3L - chr3L_13010445_13010503 chr3L_13010450_13010503 chr3L_13010504_13010570;chr3L_13010382_13010444 97.65 100.00 100.00 100.00 100.00 100.00 94.12 96.77 97.30 100.00 93.33 96.88 100.00 100.00 96.77 95.65 100.00 95.00 95.00 97.56 100.00 NA 91.30 100.00 100.00 95.45 93.75 100.00 93.33 92.86 100.00 100.00 95.45 96.43 100.00 94.74 93.75 94.12 95.24 95.65 96.97 97.73 100.00 100.00 100.00 92.16 95.45 100.00 100.00 100.00 100.00 93.75 100.00 100.00 95.83 100.00 93.94 98.25 K alternative_donor CG4119 chrX + chrX_5560355_5560409;chrX_5560347_5560409 chrX_5560351_5560409 chrX_5560410_5560501;chrX_5560114_5560346 20.75 13.73 30.43 31.82 22.22 26.09 34.78 28.00 12.28 18.52 17.39 20.37 34.78 20.83 36.84 36.00 19.05 16.67 29.17 20.93 19.05 19.23 25.33 18.87 21.95 33.33 18.75 23.40 16.67 18.52 17.39 21.62 20.75 29.73 3.12 29.27 22.33 21.13 18.75 18.18 24.14 27.12 26.32 10.87 20.51 21.88 19.44 10.42 27.50 21.74 18.84 12.90 15.15 21.88 15.15 14.29 17.65 11.54 K alternative_acceptor MESK2,I_chr2R_17401067_17401713 chr2R + chr2R_17389985_17394826 chr2R_17389985_17394799 chr2R_17389891_17389984;chr2R_17394827_17394906 55.56 50.00 NA 52.63 NA NA 55.56 52.38 57.14 NA NA 50.00 NA 46.67 60.00 60.00 NA NA 66.67 62.50 NA 50.00 53.85 58.33 NA NA 75.00 NA NA 75.00 50.00 NA 40.00 60.00 61.54 NA 60.00 NA NA 46.15 63.64 53.33 75.00 50.00 NA 58.33 54.55 55.56 55.00 54.55 58.82 NA NA NA 54.55 NA 58.33 55.56 K jcn_only_AD CG4877 chr3L + chr3L_16380053_16380120 chr3L_16380057_16380120 chr3L_16380121_16382448;chr3L_16379773_16380052 100.00 100.00 92.31 97.92 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA 91.30 100.00 100.00 100.00 90.48 98.08 NA 96.67 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 96.15 90.00 100.00 100.00 100.00 100.00 100.00 91.67 97.14 100.00 95.83 100.00 90.91 100.00 100.00 NA NA 93.33 100.00 100.00 100.00 NA NA NA 100.00 NA NA 100.00 K intron_retention trbl,I_chr3L_20390576_20390678 chr3L - chr3L_20390576_20393525 chr3L_20390575_20390576;chr3L_20393525_20393526 chr3L_20390476_20390575;chr3L_20393526_20394677 10.47 0.00 10.00 14.81 12.50 NA 5.56 16.67 15.91 7.69 NA 5.71 25.00 21.43 8.33 11.11 NA 11.11 10.00 10.53 0.00 9.09 10.42 6.06 NA NA 13.33 27.78 37.50 7.14 4.35 10.00 12.50 8.57 12.50 17.24 7.69 6.90 8.11 7.27 11.76 12.50 10.53 7.50 12.50 9.52 16.67 3.85 10.81 9.52 14.29 19.05 10.53 0.00 10.53 6.67 22.22 5.56 K alternative_donor Nedd4,I_chr3L_17526753_17527450,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17526753_17527450;chr3L_17526950_17527450 chr3L_17526749_17527450 chr3L_17527451_17527550;chr3L_17526708_17526748 27.59 28.00 22.22 25.00 47.06 19.15 18.46 29.03 29.58 7.14 31.82 18.68 40.74 25.71 29.79 23.81 25.00 30.95 33.33 27.88 27.59 12.50 32.26 19.44 35.42 35.00 24.32 11.11 25.00 20.59 25.00 21.43 5.66 23.44 20.59 18.18 17.39 36.36 26.67 14.00 21.05 32.26 41.94 25.81 15.00 42.42 31.82 34.55 36.26 38.10 30.43 35.29 45.83 22.22 34.00 42.86 60.00 46.43 K alternative_acceptor CG31224,Cpsf73 chr3R - chr3R_14486963_14487033 chr3R_14486971_14487033 chr3R_14487034_14487476;chr3R_14486843_14486962 100.00 100.00 93.75 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 96.43 NA 100.00 100.00 97.62 90.91 94.74 100.00 100.00 100.00 92.86 100.00 95.00 96.67 100.00 95.24 100.00 95.83 100.00 95.83 95.65 100.00 100.00 96.97 100.00 96.67 100.00 100.00 94.44 100.00 100.00 96.15 100.00 100.00 97.30 96.88 92.31 100.00 100.00 100.00 100.00 97.30 100.00 K cassette Jupiter,I_chr3R_7418347_7445425,RE_chr3R_7419487_7429863,I_chr3R_7429934_7430307,I_chr3R_7429962_7445425,I_chr3R_7430006_7445425,RI_chr3R_7442793_7445425 chr3R - chr3R_7419489_7445425 chr3R_7419489_7429863;chr3R_7430006_7445425 chr3R_7429864_7430005 chr3R_7419355_7419488;chr3R_7445426_7445525 0.18 0.12 0.18 0.35 0.19 0.00 0.61 0.55 0.14 0.00 0.18 0.20 0.00 0.20 0.00 0.36 0.36 0.00 0.17 0.16 0.17 0.74 0.24 0.28 0.17 0.31 0.00 1.02 0.17 0.23 0.34 0.00 0.10 0.11 0.54 0.48 0.09 0.09 0.24 0.09 0.18 0.27 0.44 0.18 0.20 0.11 0.12 0.23 0.27 0.18 0.10 0.00 0.16 0.17 0.27 0.12 0.35 0.00 K alternative_acceptor pita,Rrp4 chr2R - chr2R_19437411_19437470 chr2R_19437415_19437470 chr2R_19437471_19438559;chr2R_19436488_19437410 100.00 100.00 100.00 97.87 100.00 100.00 96.67 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 96.43 100.00 100.00 100.00 100.00 97.37 100.00 97.30 97.30 96.77 100.00 100.00 100.00 100.00 100.00 97.87 96.67 100.00 100.00 95.65 97.92 98.57 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.70 98.00 98.39 94.87 96.43 100.00 100.00 100.00 95.24 95.65 98.39 K intron_retention RpL32,I_chr3R_25871509_25871807 chr3R - chr3R_25871509_25871708 chr3R_25871508_25871509;chr3R_25871708_25871709 chr3R_25871409_25871508;chr3R_25871709_25871727 85.11 NA 60.00 47.37 NA NA 92.86 83.33 76.92 83.33 NA 81.25 NA NA 100.00 82.35 NA NA 87.50 66.67 NA 97.14 81.82 83.33 78.57 72.73 82.76 100.00 85.11 76.47 95.00 72.00 91.30 NA 93.75 95.24 93.75 91.67 88.00 78.79 87.10 72.22 NA 90.00 96.00 85.71 94.44 76.67 94.12 94.44 91.30 NA 84.62 83.33 88.89 94.12 80.00 80.95 K intron_retention alph,I_chr3R_25417890_25422962 chr3R + chr3R_25417890_25422962 chr3R_25417889_25417890;chr3R_25422962_25422963 chr3R_25417790_25417889;chr3R_25422963_25423062 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG17019,I_chr2R_8821104_8821171 chr2R - chr2R_8819247_8819306 chr2R_8819246_8819247;chr2R_8819306_8819307 chr2R_8819107_8819246;chr2R_8819307_8820867 0.00 0.00 0.00 0.00 NA 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 K intron_retention CG33936,snoRNA:Me18S-G1358b,CG33937,RI_chr3R_5183458_5183705 chr3R + chr3R_5180806_5183705 chr3R_5180805_5180806;chr3R_5183705_5183706 chr3R_5180647_5180805;chr3R_5183706_5183805 0.00 0.00 0.00 0.00 0.00 0.00 0.91 1.01 0.51 0.00 0.00 0.50 0.00 0.00 0.74 1.32 0.56 1.06 0.50 0.50 0.00 0.00 0.00 0.35 0.00 0.00 0.80 0.84 0.35 0.25 0.00 0.00 0.18 0.55 0.45 0.00 0.00 0.81 0.65 0.14 0.00 0.40 0.53 0.23 0.00 0.00 0.70 0.44 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Dsp1,I_chrX_16228447_16229355,I_chrX_16231287_16231413 chrX + chrX_16228447_16230320;chrX_16228447_16230323 chrX_16228447_16230299 chrX_16228347_16228446;chrX_16230324_16230776 14.75 17.65 12.87 11.45 23.08 20.00 14.75 14.56 19.91 25.81 10.14 19.07 13.33 15.24 18.48 19.77 19.48 24.75 8.85 14.11 11.25 38.20 23.58 16.30 14.71 17.57 27.37 28.26 12.50 15.28 12.77 11.63 11.11 16.23 12.70 9.41 8.70 6.90 17.53 12.30 9.38 14.29 12.26 14.29 18.75 17.81 11.76 14.49 15.87 14.12 10.69 17.07 3.92 10.00 17.20 17.14 19.72 14.89 K intron_retention Scamp,I_chrX_15342614_15342891,I_chrX_15343542_15343655 chrX - chrX_15340868_15340936 chrX_15340867_15340868;chrX_15340936_15340937 chrX_15340237_15340867;chrX_15340937_15341863 100.00 100.00 99.32 100.00 100.00 99.07 99.55 100.00 100.00 100.00 98.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.02 100.00 100.00 100.00 98.92 100.00 100.00 100.00 100.00 100.00 99.50 100.00 99.38 99.63 99.09 100.00 100.00 98.94 100.00 99.61 100.00 100.00 100.00 100.00 100.00 99.59 100.00 100.00 100.00 99.29 100.00 100.00 100.00 100.00 100.00 99.30 100.00 100.00 N jcn_only_AD mei-9 chrX - chrX_4208761_4208856 chrX_4208761_4208849 chrX_4208622_4208760;chrX_4208857_4209826 42.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 40.00 42.86 NA NA NA NA NA NA NA NA 43.48 NA NA 27.27 28.57 NA 42.86 NA 56.52 NA NA NA NA NA NA 52.38 51.85 K jcn_only_AA Psi,RI_chr2R_12752536_12752596,I_chr2R_12753387_12753659 chr2R - chr2R_12752536_12752596;chr2R_12752542_12752596 chr2R_12752539_12752596 chr2R_12752597_12752696;chr2R_12752436_12752535 64.71 54.29 51.28 57.38 45.16 74.29 73.53 57.14 70.77 60.00 53.85 65.33 81.82 65.38 73.81 57.58 58.97 58.33 66.67 68.42 58.33 53.70 55.00 56.67 NA 68.29 60.00 65.00 74.42 71.43 58.33 59.26 69.57 59.32 NA 66.67 63.93 69.23 54.29 65.93 64.71 60.92 68.97 66.67 73.91 61.70 64.71 61.96 60.61 62.50 67.74 NA 70.45 66.67 67.31 68.75 73.33 63.64 K cassette yrt chr3R - chr3R_9257076_9257390 chr3R_9257076_9257136;chr3R_9257257_9257390 chr3R_9257137_9257256 chr3R_9256921_9257075;chr3R_9257391_9257525 100.00 100.00 100.00 98.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 K intron_retention Tak1,I_chrX_20388150_20389255 chrX - chrX_20388150_20388725 chrX_20388149_20388150;chrX_20388725_20388726 chrX_20388050_20388149;chrX_20388726_20388923 2.13 6.82 5.56 0.00 2.94 11.11 1.82 8.82 2.68 0.00 7.89 3.57 7.41 0.00 5.56 4.88 0.00 0.00 0.00 2.47 9.09 1.37 2.13 2.70 5.71 0.00 2.44 9.80 0.00 0.00 5.00 0.00 2.13 4.26 0.00 0.00 1.69 0.00 0.00 4.17 0.00 2.78 0.00 4.44 4.00 0.00 1.61 0.00 7.14 5.77 4.35 0.00 0.00 3.85 2.13 0.00 1.18 0.00 K intron_retention Cyp28a5 chr2L + chr2L_13977939_13978002 chr2L_13977938_13977939;chr2L_13978002_13978003 chr2L_13977696_13977938;chr2L_13978003_13978107 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.76 0.00 0.00 0.00 0.00 K alternative_acceptor Glycogenin,noncoding_8326 chr2R + chr2R_17096177_17097687 chr2R_17096177_17097476 chr2R_17095975_17096176;chr2R_17097688_17098249 83.33 NA NA NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA 83.33 NA 60.00 NA NA NA 83.33 80.00 NA NA NA NA NA NA NA K intron_retention ALiX,I_chr3R_23531574_23532266 chr3R - chr3R_23525090_23525156 chr3R_23525089_23525090;chr3R_23525156_23525157 chr3R_23524808_23525089;chr3R_23525157_23525275 0.00 1.27 0.00 1.19 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.65 0.00 0.84 1.39 0.00 1.68 1.01 5.11 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.87 1.31 0.00 0.00 0.00 0.87 0.00 0.00 0.00 2.56 1.28 0.00 0.71 0.72 0.00 0.00 0.00 0.00 0.00 0.74 K intron_retention Acox57D-p,Acox57D-d chr2R + chr2R_17274329_17274419 chr2R_17274328_17274329;chr2R_17274419_17274420 chr2R_17274238_17274328;chr2R_17274420_17274582 0.00 0.00 0.00 2.27 0.00 0.00 0.00 4.35 0.00 NA 0.00 0.00 0.00 0.00 3.03 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 9.09 2.44 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG15221 chrX + chrX_11629474_11629534 chrX_11629473_11629474;chrX_11629534_11629535 chrX_11628817_11629473;chrX_11629535_11630650 0.00 1.37 0.00 1.55 0.00 3.45 0.00 1.83 0.56 0.00 0.00 0.88 0.00 0.00 0.00 0.00 1.67 0.00 0.00 1.26 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 2.56 3.70 0.00 0.00 0.00 0.91 0.00 1.54 0.00 2.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 1.37 0.00 1.08 0.00 K intron_retention l(2)s5379,I_chr2L_2227282_2227349,RI_chr2L_2228057_2229265,I_chr2L_2229012_2229265,I_chr2L_2229179_2229265 chr2L + chr2L_2227282_2229265 chr2L_2227281_2227282;chr2L_2229265_2229266 chr2L_2227182_2227281;chr2L_2229266_2229365 0.64 0.00 0.00 1.74 3.51 0.00 1.90 0.68 1.75 0.00 1.83 0.00 1.71 2.86 1.60 2.05 0.86 0.00 1.72 1.26 0.00 0.73 0.00 0.99 0.00 0.00 0.00 3.03 1.64 1.32 0.00 0.53 0.78 0.73 0.00 0.00 0.00 1.23 0.00 0.63 0.00 0.76 0.00 0.74 0.00 0.64 0.00 0.00 1.37 1.12 4.24 3.85 0.00 0.00 1.10 0.00 0.00 0.00 K jcn_only_AA woc,I_chr3R_23089174_23089695,I_chr3R_23096096_23096561 chr3R - chr3R_23087663_23087837 chr3R_23087666_23087837 chr3R_23087838_23087882;chr3R_23086219_23087662 60.00 58.33 58.33 75.00 NA 71.43 NA 65.00 63.64 NA NA 53.33 NA NA NA NA NA NA NA 63.89 NA 55.00 70.00 68.42 NA NA 58.33 NA NA 60.71 NA 43.48 67.19 48.15 64.00 NA 56.52 46.67 60.94 55.56 NA 58.82 NA 60.00 NA 60.00 53.57 66.67 75.00 63.64 51.22 NA NA 52.38 60.00 53.85 NA 46.15 K intron_retention CG17454 chr3L + chr3L_23709421_23709472 chr3L_23709420_23709421;chr3L_23709472_23709473 chr3L_23709002_23709420;chr3L_23709473_23710467 0.00 0.00 7.69 7.69 0.00 0.00 3.03 2.70 7.58 0.00 0.00 6.82 6.25 8.82 2.63 5.66 0.00 0.00 0.00 4.55 0.00 0.00 7.27 0.00 0.00 6.25 5.56 6.90 0.00 0.00 0.00 4.44 8.89 3.12 0.00 26.09 0.00 0.00 0.00 1.82 4.65 0.00 5.26 9.09 0.00 0.00 2.38 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 2.56 K alternative_last_exon CG17343 chr2L + chr2L_19065270_19070982 chr2L_19065270_19069443 chr2L_19070983_19071033 chr2L_19069444_19069681 chr2L_19065183_19065269 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 88.89 100.00 88.89 100.00 100.00 100.00 NA 85.71 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 95.65 100.00 NA 100.00 100.00 87.50 100.00 100.00 92.86 100.00 NA 100.00 100.00 100.00 100.00 92.86 100.00 K intron_retention mRpS25 chrX - chrX_14476727_14476789 chrX_14476726_14476727;chrX_14476789_14476790 chrX_14476532_14476726;chrX_14476790_14477016 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 1.54 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD RpL28,RI_chr3L_3221710_3221877,I_chr3L_3221982_3222744,snoRNA:Or-CD11c,snoRNA:Or-CD11b,snoRNA:Or-CD11a,I_chr3L_3222575_3222787 chr3L - chr3L_3221982_3222152;chr3L_3221982_3222574;chr3L_3221982_3222926;chr3L_3221982_3222365;chr3L_3221982_3222847 chr3L_3221982_3222787 chr3L_3221882_3221981;chr3L_3222927_3222958 8.98 10.53 2.92 1.24 1.26 1.46 4.73 0.88 3.23 12.03 1.49 6.30 2.42 6.53 1.45 4.72 1.94 3.65 2.41 3.89 3.78 4.84 32.64 32.52 27.50 1.49 19.83 8.56 16.76 19.32 11.15 9.15 8.42 0.89 21.92 26.37 23.39 28.71 42.86 17.66 9.38 2.46 1.95 19.74 8.56 20.58 29.75 17.91 2.79 28.91 41.46 19.64 10.07 47.71 2.30 29.89 13.04 8.98 K intron_retention CG9646 chr2R + chr2R_12940650_12940773 chr2R_12940649_12940650;chr2R_12940773_12940774 chr2R_12939327_12940649;chr2R_12940774_12940923 0.00 7.41 0.00 0.00 0.00 0.00 3.28 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.41 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 6.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 7.69 0.00 0.00 0.00 0.00 K intron_retention CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_245066_246387 chr4_245065_245066;chr4_246387_246388 chr4_244571_245065;chr4_246388_246398 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.64 0.00 NA NA 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.12 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA K intron_retention CG6490,F_chr3R_22303527_22303741 chr3R - chr3R_22303527_22357834 chr3R_22303526_22303527;chr3R_22357834_22357835 chr3R_22303427_22303526;chr3R_22357835_22358144 1.17 0.00 0.00 4.29 0.00 0.00 1.43 5.19 2.33 0.00 0.00 6.67 4.76 10.00 6.12 8.51 7.69 11.54 5.88 5.31 9.52 2.70 3.12 0.00 0.00 4.17 3.64 11.76 0.00 0.00 0.00 0.00 0.83 4.48 5.00 0.00 0.00 0.00 1.64 0.91 0.00 2.06 0.00 0.00 0.00 7.69 0.00 0.72 2.60 NA 0.00 0.00 4.17 NA 3.92 0.00 NA 0.00 K jcn_only_AA Sap-r,E_chr3R_26711286_26714646,I_chr3R_26712266_26712343,I_chr3R_26712627_26714606,RI_chr3R_26713323_26714382 chr3R - chr3R_26712266_26712343 chr3R_26712270_26712343 chr3R_26712344_26712443;chr3R_26712166_26712265 99.89 99.72 99.87 99.92 99.95 99.80 99.76 99.95 99.96 99.91 99.95 99.95 99.95 99.88 99.96 99.82 99.83 99.95 99.95 99.87 99.90 99.86 99.92 99.91 99.93 99.75 99.84 99.83 99.95 99.89 98.96 99.89 99.87 99.94 99.75 99.82 99.87 99.74 100.00 99.77 100.00 99.86 99.93 99.73 99.80 100.00 99.92 99.76 99.86 99.92 99.70 100.00 100.00 100.00 100.00 99.21 100.00 99.86 K jcn_only_AD CG9705,I_chr3L_16774043_16774562 chr3L + chr3L_16773891_16774562 chr3L_16774043_16774562 chr3L_16774563_16774662;chr3L_16773605_16773890 3.68 4.11 3.68 5.56 1.72 4.62 5.63 7.19 5.71 2.21 10.20 28.18 6.54 4.39 3.47 5.30 7.38 2.46 5.31 3.51 5.49 2.26 3.26 2.13 1.66 4.80 5.05 9.38 7.20 3.41 10.00 3.93 4.10 1.90 1.15 2.15 3.27 2.15 1.47 1.57 2.22 3.70 2.52 6.12 2.79 3.17 2.07 1.85 3.96 3.69 1.91 1.34 3.72 0.67 7.01 2.71 4.12 3.25 K alternative_donor eIF-2beta,RI_chr3L_12519486_12519541 chr3L - chr3L_12519486_12519596;chr3L_12519486_12519541;chr3L_12519486_12519590 chr3L_12519486_12519688 chr3L_12519386_12519485;chr3L_12519689_12519829 99.30 99.55 100.00 98.95 100.00 98.76 98.88 100.00 98.86 98.67 100.00 98.57 100.00 99.24 99.51 99.05 99.24 98.49 100.00 99.02 99.48 99.52 98.77 100.00 97.96 99.49 98.58 98.12 97.40 99.52 98.08 100.00 99.25 99.62 99.43 100.00 99.30 100.00 97.67 99.09 98.32 99.03 99.33 99.68 100.00 98.90 99.61 99.36 99.01 98.60 98.88 100.00 99.23 99.60 99.06 100.00 100.00 99.52 K jcn_only_AD I_chr2R_13460029_13460240,Dcr-2,I_chr2R_13466001_13466061,I_chr2R_13466001_13466072 chr2R - chr2R_13466001_13466058;chr2R_13466001_13466061 chr2R_13466001_13466072 chr2R_13465901_13466000;chr2R_13466073_13466161 2.57 0.00 2.82 8.06 0.00 3.77 6.60 1.69 1.26 2.70 1.96 1.48 1.45 1.89 0.00 6.74 3.75 4.35 3.70 3.64 0.00 4.35 0.00 6.15 2.33 5.88 5.26 5.26 2.13 5.36 8.14 4.76 3.57 0.00 2.38 0.00 0.00 1.96 1.85 4.17 NA 5.19 5.00 1.43 0.00 9.09 4.76 2.17 1.60 4.00 0.00 1.61 0.00 4.00 4.82 3.85 0.00 2.44 K intron_retention unk,I_chr3R_18980963_18981530 chr3R - chr3R_18980690_18981530 chr3R_18980689_18980690;chr3R_18981530_18981531 chr3R_18980567_18980689;chr3R_18981531_18981630 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 2.50 0.00 8.33 0.00 0.00 0.00 4.00 0.00 5.26 0.00 0.00 15.38 0.00 4.17 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.52 0.00 3.45 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA K jcn_only_AA CG11148,I_chr4_886499_886547,RI_chr4_886921_887162 chr4 - chr4_886478_886556 chr4_886499_886556 chr4_886557_886647;chr4_886399_886477 87.30 85.96 95.45 99.13 76.47 81.33 95.10 91.35 85.21 80.56 85.48 87.42 90.00 90.91 83.50 84.17 96.83 85.11 87.10 90.72 87.93 85.29 81.25 83.61 92.54 93.10 87.50 84.51 87.50 78.72 86.42 NA 83.33 89.78 88.73 97.47 86.99 82.89 90.22 87.18 100.00 88.65 85.94 81.05 87.10 90.62 81.08 83.33 82.42 84.31 93.33 91.53 94.12 94.12 88.89 82.05 88.24 100.00 K jcn_only_AD nonA,I_chrX_16265109_16265346 chrX + chrX_16259676_16265346 chrX_16265109_16265346 chrX_16265347_16265446;chrX_16259620_16259675 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 9.52 NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 K alternative_acceptor CG1815,I_chr3R_27501104_27501167,I_chr3R_27501104_27501176 chr3R + chr3R_27501104_27501176;chr3R_27501104_27501167 chr3R_27501104_27501179 chr3R_27501004_27501103;chr3R_27501180_27501267 5.41 10.00 5.41 1.69 3.57 3.33 10.00 5.17 2.94 7.32 6.06 6.25 10.00 3.23 2.33 2.13 15.15 7.14 2.86 5.41 5.26 7.41 6.25 12.24 3.12 3.03 6.25 6.67 3.77 5.77 8.00 2.38 9.78 10.14 9.09 2.63 1.69 9.38 4.26 3.61 2.27 3.80 3.33 0.00 10.34 8.70 5.26 4.42 10.29 6.82 8.70 11.76 4.35 5.56 5.88 3.70 12.50 4.17 K alternative_donor Mms19,I_chr3R_1059416_1059514 chr3R + chr3R_1059416_1059514 chr3R_1059457_1059514 chr3R_1059515_1059614;chr3R_1059316_1059415 100.00 100.00 100.00 100.00 93.75 94.44 100.00 100.00 97.73 88.89 100.00 100.00 94.44 100.00 96.30 96.77 100.00 100.00 100.00 97.92 100.00 100.00 100.00 97.22 94.74 100.00 95.24 93.75 95.24 100.00 91.30 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 97.50 93.75 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 K jcn_only_AA CG14446 chrX + chrX_6123824_6123881 chrX_6123824_6123878 chrX_6123404_6123823;chrX_6123882_6124017 9.38 6.90 7.50 14.29 3.85 6.25 6.67 1.67 13.89 14.58 4.55 10.91 9.76 9.38 6.67 7.41 18.18 8.57 11.54 6.10 9.09 4.69 16.07 8.93 9.38 6.06 8.11 12.00 10.53 10.42 6.45 17.39 9.09 13.33 5.13 13.16 9.09 12.20 9.68 12.05 0.00 10.00 2.78 10.00 0.00 4.17 8.70 8.70 10.47 19.05 13.64 22.22 18.18 NA 12.24 NA NA 13.79 K intron_retention Med,CG1792 chr3R + chr3R_27439940_27440000 chr3R_27439939_27439940;chr3R_27440000_27440001 chr3R_27439657_27439939;chr3R_27440001_27440169 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 K cassette Gug,R_chr3L_8444636_8444874,I_chr3L_8455244_8456103 chr3L + chr3L_8445229_8456103 chr3L_8445229_8455071;chr3L_8455189_8456103 chr3L_8455072_8455188 chr3L_8445200_8445228;chr3L_8456104_8456203 100.00 100.00 100.00 95.00 NA 100.00 87.50 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 88.89 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 NA NA NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA NA K intron_retention LanA,I_chr3L_6208090_6208194 chr3L - chr3L_6202269_6202335 chr3L_6202268_6202269;chr3L_6202335_6202336 chr3L_6199077_6202268;chr3L_6202336_6204236 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.31 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor E(Pc) chr2R + chr2R_7339818_7340897;chr2R_7339807_7340897 chr2R_7339889_7340897 chr2R_7340898_7340908;chr2R_7339722_7339806 25.00 NA NA 33.33 NA NA 22.22 22.22 28.57 44.44 NA 28.57 NA NA NA 12.50 NA NA NA 25.00 NA 25.00 25.00 50.00 NA NA NA 11.11 38.46 28.57 NA NA 25.00 NA 42.86 27.27 14.29 NA NA 22.73 NA 42.86 NA 16.67 NA 33.33 NA 32.00 14.29 NA 14.29 NA 14.29 NA NA NA NA 33.33 K alternative_donor gish chr3R + chr3R_12098804_12100306 chr3R_12098835_12100306 chr3R_12100307_12100597;chr3R_12098798_12098803 100.00 100.00 100.00 97.37 94.74 100.00 100.00 98.04 95.24 100.00 100.00 97.50 100.00 96.77 100.00 98.04 100.00 95.24 100.00 97.37 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 88.89 100.00 97.67 100.00 100.00 95.45 100.00 92.31 100.00 95.83 97.87 96.43 100.00 100.00 100.00 90.00 97.22 98.04 100.00 100.00 100.00 NA NA 97.56 100.00 90.91 95.00 K intron_retention CG34234,RI_chr2R_8394261_8394315 chr2R - chr2R_8374771_8374827 chr2R_8374770_8374771;chr2R_8374827_8374828 chr2R_8374320_8374770;chr2R_8374828_8374896 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N alternative_donor myoglianin,RI_chr4_712986_714006,RI_chr4_716066_716482,RI_chr4_716153_716613 chr4 - chr4_715043_716322;chr4_715043_716708;chr4_715043_716482;chr4_715043_716613 chr4_715043_715839 chr4_714007_715042;chr4_716709_716712 80.00 77.78 100.00 72.00 75.00 87.50 73.08 55.17 70.73 100.00 100.00 58.33 35.00 66.67 87.50 60.53 75.00 77.78 78.57 63.64 100.00 100.00 60.00 100.00 80.00 100.00 83.33 100.00 100.00 60.00 63.64 NA 100.00 65.52 83.33 100.00 80.00 100.00 100.00 88.89 50.00 76.19 66.67 77.78 NA 100.00 100.00 100.00 70.37 66.67 81.82 66.67 75.00 100.00 80.00 66.67 100.00 100.00 K cassette CG42388,F_chrX_8932173_8934103 chrX + chrX_8924930_8945069 chrX_8924930_8934070;chrX_8934350_8945069 chrX_8934071_8934349 chrX_8924896_8924929;chrX_8945070_8945118 100.00 NA NA 80.00 NA NA 100.00 100.00 88.89 100.00 NA 100.00 NA 100.00 NA 100.00 NA NA NA 100.00 NA 87.50 85.71 100.00 NA NA 100.00 100.00 80.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 85.71 100.00 NA 100.00 NA 100.00 NA NA NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA NA K intron_retention Hrb98DE,I_chr3R_24425722_24426084,I_chr3R_24425722_24428493,I_chr3R_24426291_24426781,I_chr3R_24426737_24426805,snoRNA:Psi28S-3405a,snoRNA:Psi28S-3305a,snoRNA:Psi28S-3405b,snoRNA:Psi28S-3405c,snoRNA:Psi28S-3305b,snoRNA:Psi28S-3405d,RI_chr3R_24429041_24431183 chr3R + chr3R_24425722_24426439 chr3R_24425721_24425722;chr3R_24426439_24426440 chr3R_24425622_24425721;chr3R_24426440_24426915 8.89 8.45 5.48 9.09 6.25 8.89 8.45 12.50 10.64 29.17 NA 10.34 5.00 8.20 6.06 6.57 2.50 3.92 6.90 5.74 NA 9.09 18.42 14.04 25.49 9.52 12.73 8.82 11.86 10.87 6.38 6.06 8.11 8.33 18.87 17.74 9.76 7.50 7.89 7.76 11.63 9.47 7.32 13.33 8.77 11.63 12.28 5.61 8.18 10.53 15.66 12.12 9.52 23.73 8.00 7.81 12.73 3.45 K jcn_only_AA CG7843,I_chr2R_1972736_1972822 chr2R - chr2R_1971896_1972012;chr2R_1971883_1972012 chr2R_1971513_1972012 chr2R_1972013_1972292 90.78 90.91 93.94 85.15 90.00 93.44 92.73 90.78 93.29 72.97 87.04 95.80 93.42 92.06 91.46 91.59 93.33 93.33 88.37 91.87 94.55 92.94 91.67 84.52 86.96 91.74 83.12 88.00 90.91 91.49 55.64 90.62 86.30 90.98 89.86 80.85 90.32 96.55 93.75 85.05 90.70 89.87 81.36 92.73 88.24 90.77 89.29 91.14 90.77 90.54 87.95 83.67 93.75 97.44 91.21 85.25 97.67 86.30 K intron_retention CG10737 chr2R + chr2R_15062754_15063770 chr2R_15062753_15062754;chr2R_15063770_15063771 chr2R_15062592_15062753;chr2R_15063771_15063852 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Rab1,I_chr3R_17094214_17094492,I_chr3R_17099005_17099062 chr3R - chr3R_17093176_17093231 chr3R_17093175_17093176;chr3R_17093231_17093232 chr3R_17092948_17093175;chr3R_17093232_17093279 0.00 0.00 0.52 0.32 0.00 0.00 0.33 0.33 0.40 0.00 0.56 0.00 0.00 0.00 0.47 0.44 0.00 0.00 0.24 0.14 0.00 0.32 0.00 0.00 0.87 0.47 0.78 1.30 0.91 0.00 0.48 0.00 0.00 0.34 0.00 0.00 0.56 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.19 0.54 0.27 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention cnn,I_chr2R_9333096_9336723,I_chr2R_9333096_9336812,RI_chr2R_9334834_9336719,I_chr2R_9347031_9370659 chr2R - chr2R_9334834_9336723 chr2R_9334833_9334834;chr2R_9336723_9336724 chr2R_9334744_9334833;chr2R_9336724_9336792 90.91 92.31 90.91 94.12 NA NA 82.61 81.82 100.00 100.00 NA 89.47 87.50 NA 77.78 94.74 87.50 NA 91.67 84.62 77.78 92.31 90.91 91.67 100.00 100.00 95.45 95.24 100.00 86.36 81.82 NA 94.74 100.00 NA 84.62 88.24 NA 90.91 86.36 NA 85.71 70.00 93.33 NA 90.00 NA 93.33 81.82 88.89 93.33 NA NA NA 90.00 NA NA NA K intron_retention Unc-76,RI_chrX_1983640_1985001,I_chrX_2002576_2003165 chrX + chrX_1985484_1985550 chrX_1985483_1985484;chrX_1985550_1985551 chrX_1985002_1985483;chrX_1985551_1985766 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Nhe2,I_chr2L_21122390_21122912 chr2L + chr2L_21124522_21125346 chr2L_21124615_21125346 chr2L_21125347_21125439;chr2L_21124443_21124521 1.64 0.00 3.33 14.04 5.56 2.04 3.03 5.06 1.23 5.56 0.00 0.00 0.00 2.56 0.00 4.88 0.00 0.00 4.35 0.00 5.08 5.00 0.00 0.00 2.86 0.00 6.06 3.12 0.00 2.94 3.92 NA 0.00 3.70 0.00 0.00 0.00 4.88 0.00 0.00 NA 3.70 2.56 4.26 0.00 0.00 0.00 0.00 2.48 3.23 3.51 2.94 0.00 NA 0.00 0.00 0.00 3.12 K cassette HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13162296_13163860 chrX_13162296_13162726;chrX_13162874_13163860 chrX_13162727_13162873 chrX_13161355_13162295;chrX_13163861_13163991 99.06 96.10 99.33 93.12 100.00 100.00 98.55 99.07 100.00 97.06 100.00 99.18 33.09 99.06 99.38 99.29 100.00 99.13 99.14 98.54 99.06 91.21 97.87 98.51 99.31 96.21 97.91 99.15 96.55 97.27 98.50 97.94 98.23 99.52 98.73 99.39 98.53 99.44 98.41 99.13 99.13 99.28 100.00 99.44 98.41 99.29 99.02 97.97 98.81 100.00 98.20 97.46 98.94 100.00 99.36 99.08 98.02 99.11 K jcn_only_AD CG18317,RI_chr2L_1718492_1723881 chr2L - chr2L_1718492_1718739;chr2L_1718492_1718695 chr2L_1718492_1718674 chr2L_1718421_1718491;chr2L_1718740_1718903 62.20 51.85 57.38 59.02 70.45 69.57 69.51 59.34 62.20 73.87 69.70 65.89 68.00 83.78 62.26 60.00 71.79 88.64 68.97 52.38 56.82 45.74 60.78 60.00 69.77 68.29 64.52 55.56 56.15 54.29 64.62 48.81 53.33 62.89 49.37 50.70 69.70 65.00 67.20 15.32 60.24 63.25 71.43 56.07 63.37 62.14 62.79 61.03 57.80 47.95 57.14 60.61 65.75 63.49 65.67 54.17 63.93 60.81 K jcn_only_AA E_chr2L_20647810_20648188,CG2614 chr2L + chr2L_20658156_20658223 chr2L_20658156_20658211 chr2L_20657537_20658155;chr2L_20658224_20658404 96.67 97.73 95.12 100.00 100.00 100.00 95.83 100.00 95.24 NA 96.67 96.23 96.67 100.00 100.00 97.06 95.24 96.00 100.00 98.78 90.91 97.83 100.00 97.78 92.59 95.24 96.23 96.67 96.15 100.00 87.76 90.48 96.15 94.87 94.12 100.00 94.23 100.00 93.02 97.56 93.10 96.77 100.00 96.43 100.00 95.35 100.00 96.88 94.74 95.00 91.38 95.65 100.00 97.56 97.87 96.97 96.43 96.88 K intron_retention CG2691,noncoding_23539 chrX - chrX_13514306_13514376 chrX_13514305_13514306;chrX_13514376_13514377 chrX_13513771_13514305;chrX_13514377_13514567 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.95 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.82 K intron_retention RpS11,I_chr2R_8087545_8087625,I_chr2R_8087545_8087698,I_chr2R_8087747_8088193 chr2R - chr2R_8087545_8087620 chr2R_8087544_8087545;chr2R_8087620_8087621 chr2R_8087476_8087544;chr2R_8087621_8087689 0.07 0.08 0.09 0.07 0.15 0.05 0.08 0.08 0.10 0.12 0.07 0.05 0.06 0.09 0.07 0.08 0.05 0.07 0.07 0.06 0.04 0.13 0.10 0.06 0.04 0.10 0.13 0.45 0.10 0.15 0.07 0.07 0.10 0.07 0.09 0.00 0.07 0.09 0.07 0.10 0.10 0.08 0.04 0.06 0.06 0.07 0.05 0.15 0.15 0.09 0.09 0.00 0.06 0.02 0.06 0.04 0.05 0.10 K intron_retention MB8.chr3R.pasa.66,CG1091,I_chr3R_2909743_2909904,I_chr3R_2910029_2910096,RI_chr3R_2910490_2910686,RI_chr3R_2911041_2911135,RI_chr3R_2946518_2946663 chr3R - chr3R_2909614_2909669 chr3R_2909613_2909614;chr3R_2909669_2909670 chr3R_2909597_2909613;chr3R_2909670_2909714 23.81 14.89 16.13 34.21 20.83 24.14 34.78 28.00 21.74 31.82 27.27 21.62 21.88 27.27 20.00 24.32 21.21 24.44 23.33 28.77 24.14 56.25 32.05 16.25 45.83 38.10 31.82 48.15 29.03 27.59 19.74 31.25 32.00 26.32 23.08 48.48 26.42 18.64 17.91 23.21 47.62 16.95 24.14 21.88 22.58 19.57 15.66 16.67 24.14 17.19 20.59 23.81 15.00 21.54 15.56 25.00 16.90 20.69 K jcn_only_AA Sin3A,RI_chr2R_8468118_8468706,I_chr2R_8473578_8480185,RI_chr2R_8479951_8480233 chr2R - chr2R_8468118_8468706 chr2R_8468136_8468706 chr2R_8468707_8468806;chr2R_8468018_8468117 87.18 88.78 92.65 87.16 83.82 93.24 56.63 91.87 91.88 90.28 80.65 88.00 91.67 82.81 88.51 81.19 88.52 93.06 87.06 82.61 80.28 92.21 81.19 88.03 93.40 82.28 91.03 89.11 65.33 75.28 86.49 90.57 80.26 90.91 86.67 94.51 90.07 78.35 94.97 90.67 84.21 87.18 87.88 83.90 68.18 81.08 84.38 72.48 90.73 90.85 90.61 78.79 88.64 80.56 83.87 89.05 86.59 75.71 K intron_retention CG4210 chr3R + chr3R_11039830_11039891 chr3R_11039829_11039830;chr3R_11039891_11039892 chr3R_11039694_11039829;chr3R_11039892_11039943 0.00 0.00 0.00 0.00 NA 4.35 2.70 5.00 6.82 NA NA 0.00 NA 0.00 8.70 5.66 0.00 0.00 6.67 1.79 0.00 0.00 2.70 0.00 0.00 8.70 0.00 10.53 3.23 0.00 0.00 0.00 0.00 8.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.52 5.26 2.38 3.12 3.57 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 2.60 0.00 K intron_retention cher,I_chr3R_12927155_12927241,I_chr3R_12927155_12927867,I_chr3R_12927155_12927890,I_chr3R_12927279_12927890,I_chr3R_12943024_12948119 chr3R - chr3R_12926801_12927073 chr3R_12926800_12926801;chr3R_12927073_12927074 chr3R_12926714_12926800;chr3R_12927074_12927117 0.00 0.00 0.14 0.17 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.13 0.52 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.42 0.00 0.00 0.39 0.00 0.00 0.21 0.00 0.00 0.12 0.09 0.00 0.48 0.37 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.13 0.00 0.00 0.00 K multi_cassette DCAP,I_chr2R_6178643_6181126,RI_chr2R_6183553_6192101,I_chr2R_6188094_6192101 chr2R + chr2R_6180945_6182116 chr2R_6180945_6181126;chr2R_6181267_6181365;chr2R_6181439_6182116 chr2R_6181127_6181266;chr2R_6181366_6181438 chr2R_6180937_6180944;chr2R_6182117_6182270 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Spase25,I_chrX_11379530_11379593 chrX + chrX_11380199_11380268 chrX_11380198_11380199;chrX_11380268_11380269 chrX_11379594_11380198;chrX_11380269_11380509 70.09 70.83 69.70 71.74 55.00 68.00 54.17 70.18 69.74 NA 59.09 49.21 38.30 75.00 69.23 71.67 77.42 21.88 66.67 52.63 67.86 90.00 81.82 73.08 92.31 87.88 73.91 81.25 80.00 NA 79.41 78.57 70.00 70.37 55.56 NA 61.11 69.23 78.95 78.95 55.00 63.08 66.67 93.33 50.00 42.86 61.11 72.22 60.78 79.41 66.67 85.71 75.00 73.33 73.33 77.27 62.16 58.82 K intron_retention CG10904 chr2R - chr2R_19857056_19857118 chr2R_19857055_19857056;chr2R_19857118_19857119 chr2R_19856455_19857055;chr2R_19857119_19857763 8.22 8.33 0.00 47.06 NA 14.29 3.45 8.70 9.76 NA NA 6.25 0.00 0.00 15.00 7.14 NA 9.09 0.00 6.56 0.00 NA 7.14 11.11 NA 0.00 12.50 NA 20.00 17.65 17.78 0.00 11.11 3.33 NA 0.00 14.29 NA 0.00 8.82 16.67 7.89 15.79 10.53 3.45 2.27 12.50 0.00 10.00 9.09 0.00 NA 0.00 10.53 12.90 NA 8.11 1.47 K intron_retention smo chr2L + chr2L_278324_278642 chr2L_278323_278324;chr2L_278642_278643 chr2L_277930_278323;chr2L_278643_279124 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.23 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 3.85 NA NA NA 0.00 NA NA 3.12 NA NA NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K cassette RhoGAP19D,EI_chrX_20347839_20348139,DMG4-MB6.chrX.37.001,RI_chrX_20380495_20381649 chrX - chrX_20358550_20361573 chrX_20358550_20359356;chrX_20359675_20361573 chrX_20359357_20359674 chrX_20358035_20358549;chrX_20361574_20362133 98.08 98.57 100.00 90.57 97.83 100.00 94.12 95.16 99.08 97.92 97.50 98.92 93.10 100.00 98.00 100.00 100.00 97.56 100.00 97.98 100.00 95.37 98.98 98.67 98.51 97.22 98.73 95.24 89.66 97.10 96.77 97.56 94.62 98.53 100.00 97.22 99.33 97.59 99.14 98.94 91.30 97.27 93.94 98.41 98.39 98.04 98.08 94.59 98.86 100.00 98.81 97.06 98.31 98.15 97.73 96.00 100.00 100.00 K jcn_only_AD CG12384,I_chr2R_7245925_7246462,RI_chr2R_7245930_7246231,RI_chr2R_7245930_7246259 chr2R - chr2R_7245930_7246462 chr2R_7245930_7246231 chr2R_7245841_7245929;chr2R_7246463_7246526 1.03 0.52 0.48 2.05 1.46 1.30 1.98 1.14 1.54 1.71 1.40 0.52 0.00 0.60 1.29 1.46 0.74 0.85 0.58 1.65 1.90 2.21 0.25 0.58 0.93 0.00 1.04 1.95 2.93 0.34 8.04 1.08 0.36 1.14 1.33 1.95 1.39 0.62 0.50 0.44 0.00 1.02 0.00 0.00 0.27 0.52 0.65 0.99 1.56 1.47 1.03 1.65 1.67 0.85 1.48 0.66 1.35 0.00 K alternative_acceptor aux chr3R + chr3R_52414_52485 chr3R_52414_52472 chr3R_52252_52413;chr3R_52486_53244 100.00 100.00 100.00 100.00 100.00 100.00 98.31 100.00 100.00 100.00 100.00 98.44 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 98.31 97.22 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Gbeta13F,I_chrX_15754284_15755167,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15754284_15755256 chrX_15754283_15754284;chrX_15755256_15755257 chrX_15754256_15754283;chrX_15755257_15755267 90.00 90.91 90.00 88.24 66.67 80.00 83.33 88.89 90.91 NA 100.00 90.48 96.43 86.36 100.00 81.08 100.00 90.91 91.67 91.18 NA 78.57 83.33 83.33 84.62 77.78 93.33 NA 100.00 76.92 81.82 NA 93.75 88.89 90.00 81.25 94.12 91.67 NA 100.00 NA 95.24 90.00 73.33 NA 82.35 75.00 100.00 82.61 88.89 92.86 90.00 NA NA 91.67 NA 80.00 NA K alternative_donor Cam,I_chr2R_8161049_8161270 chr2R + chr2R_8146964_8147544 chr2R_8146971_8147544 chr2R_8147545_8147693;chr2R_8146944_8146963 0.26 0.00 0.00 0.29 0.23 0.60 1.72 0.25 0.50 0.00 0.70 0.76 0.00 0.41 1.19 0.93 0.21 0.00 0.37 0.91 0.77 1.21 0.26 0.32 1.26 0.00 0.71 0.46 0.49 0.79 0.51 0.00 0.00 0.26 0.73 0.00 0.00 0.00 0.00 0.19 0.89 0.21 0.72 0.24 0.00 0.00 0.54 0.65 0.66 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.39 K jcn_only_AA NijA chr3L - chr3L_10688468_10688728 chr3L_10688516_10688728 chr3L_10688729_10688804;chr3L_10688432_10688467 66.67 76.79 59.09 58.46 57.14 61.76 75.00 78.26 59.72 NA NA 59.09 NA 67.74 66.67 81.01 63.41 58.54 66.67 66.15 75.00 47.17 85.53 61.67 64.10 66.67 65.15 58.06 69.39 61.36 63.08 61.54 73.03 65.38 65.17 73.91 49.02 62.22 71.21 61.86 61.76 76.71 62.50 72.22 66.67 75.18 75.76 65.85 74.49 50.98 67.24 67.35 87.50 81.82 69.77 68.63 70.00 80.98 K alternative_donor CG12567,I_chr2LHet_21570_31347,I_chr2LHet_21570_31874 chr2LHet - chr2LHet_21570_32923 chr2LHet_21570_32572 chr2LHet_21470_21569;chr2LHet_32924_32973 100.00 100.00 100.00 100.00 100.00 100.00 98.55 100.00 98.72 100.00 100.00 100.00 100.00 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 98.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 98.82 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 K alternative_acceptor CG7556,I_chrX_19072966_19073032 chrX - chrX_19072281_19073032 chrX_19072966_19073032 chrX_19073033_19073132;chrX_19072073_19072280 0.00 0.00 0.00 0.94 0.00 0.00 1.10 0.00 0.60 0.00 1.33 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.89 0.00 1.35 0.00 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor wun,I_chr2R_5291118_5291211,I_chr2R_5297151_5300729,I_chr2R_5297159_5300813 chr2R - chr2R_5290341_5291211 chr2R_5291118_5291211 chr2R_5291212_5291311;chr2R_5290161_5290340 3.33 2.33 3.23 5.26 3.85 3.33 10.81 3.33 3.03 2.38 13.33 4.44 5.00 5.26 6.67 7.69 4.17 11.11 8.33 3.61 11.11 18.46 1.19 1.49 1.47 14.29 1.67 6.25 2.00 2.22 7.41 4.00 3.85 4.65 1.61 15.62 2.30 1.79 0.93 3.85 5.13 3.12 4.76 1.79 1.72 2.60 1.49 3.51 6.82 1.75 2.94 2.17 1.82 1.72 2.94 1.85 0.00 3.39 K jcn_only_AD Aps,I_chr3L_10889978_10890059,I_chr3L_10889978_10890180,I_chr3L_10889978_10890782,I_chr3L_10889978_10890997,I_chr3L_10889978_10891195 chr3L - chr3L_10889978_10891077 chr3L_10889978_10890997 chr3L_10889879_10889977;chr3L_10891078_10891097 0.34 0.00 0.33 1.52 0.38 0.00 0.27 0.34 0.16 0.00 2.38 0.62 0.00 0.00 0.31 0.76 1.30 6.60 0.97 0.63 0.37 1.80 0.00 0.30 2.06 0.60 0.22 1.24 3.30 0.00 0.27 0.40 0.59 0.00 0.00 1.26 0.00 0.36 0.00 0.16 0.00 0.37 0.88 0.00 0.56 0.44 0.00 0.61 0.69 0.38 0.68 0.00 0.00 0.00 0.49 0.00 0.00 0.00 K cassette CG11009,I_chr3L_12844823_12845526,I_chr3L_12845441_12845526 chr3L + chr3L_12844823_12845526;chr3L_12844823_12845715 chr3L_12844823_12845331;chr3L_12845378_12845526,chr3L_12845378_12845715 chr3L_12845332_12845377 chr3L_12844723_12844822;chr3L_12845716_12845816 39.05 32.93 45.68 83.46 30.77 40.00 14.29 40.48 36.72 34.88 45.33 54.89 53.09 29.87 32.73 50.55 43.84 41.67 42.42 40.99 59.02 53.85 27.59 36.19 27.71 19.42 36.36 52.08 10.62 39.05 55.45 45.56 59.85 40.32 38.57 33.71 30.69 28.74 26.32 33.54 45.03 41.07 35.94 34.38 48.12 43.04 40.17 48.57 35.00 47.53 31.58 30.77 17.14 39.29 37.86 41.00 20.83 30.87 K jcn_only_AA CG17082,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_645254_645306;chr2R_645254_645316 chr2R_645254_645312 chr2R_645185_645253;chr2R_645317_645382 0.00 0.00 0.00 0.87 0.00 2.38 1.11 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 2.78 2.38 1.82 2.04 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention Nop60B,I_chr2R_20062491_20062553,I_chr2R_20063248_20063949,F_chr2R_20073291_20073744 chr2R + chr2R_20062491_20062550 chr2R_20062490_20062491;chr2R_20062550_20062551 chr2R_20062404_20062490;chr2R_20062551_20062919 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.62 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.75 0.60 0.00 0.57 0.00 0.00 0.00 0.00 0.89 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG3499,I_chr2R_18772777_18772819 chr2R - chr2R_18772185_18772242 chr2R_18772188_18772242 chr2R_18772243_18772316;chr2R_18771871_18772184 20.27 15.38 19.05 24.56 20.83 14.71 17.19 19.67 21.74 22.22 23.08 24.24 26.67 26.67 18.75 19.12 26.09 12.50 18.42 20.93 18.52 20.00 19.05 21.05 14.81 20.00 16.67 28.26 22.50 26.32 26.53 32.14 24.32 23.21 16.28 25.00 15.15 11.11 18.37 20.65 23.26 20.27 16.67 19.05 31.03 23.81 18.52 23.91 22.89 20.34 16.90 14.58 23.68 20.00 17.65 25.00 18.52 12.82 K jcn_only_AA FucTB chr2L - chr2L_9429289_9429411 chr2L_9429346_9429411 chr2L_9429412_9429589;chr2L_9428774_9429288 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG4901 chr2L + chr2L_10211283_10211450 chr2L_10211283_10211397 chr2L_10211183_10211282;chr2L_10211451_10212081 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 96.97 90.91 92.31 96.88 100.00 93.33 100.00 100.00 100.00 93.33 100.00 97.83 100.00 100.00 100.00 92.31 100.00 100.00 100.00 91.67 84.00 100.00 100.00 94.44 97.92 100.00 100.00 96.15 93.75 100.00 100.00 96.88 96.30 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 96.97 N alternative_acceptor CG12581,I_chr3R_9380_9438 chr3R + chr3R_272_369 chr3R_272_356 chr3R_203_271;chr3R_370_509 100.00 NA NA NA NA NA 50.00 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,RI_chr2R_20289332_20289739,I_chr2R_20289332_20289846,I_chr2R_20289332_20290093 chr2R - chr2R_20289332_20290083;chr2R_20289332_20289739;chr2R_20289332_20289846 chr2R_20289332_20290093 chr2R_20289232_20289331;chr2R_20290094_20290193 0.00 6.25 0.00 6.90 0.00 0.00 0.00 2.33 0.00 10.00 0.00 2.22 0.00 4.55 4.35 0.00 4.00 0.00 0.00 2.22 0.00 4.35 0.00 5.88 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22.22 0.00 2.94 0.00 0.00 5.26 4.76 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 12.50 11.11 5.26 K multi_cassette ssp4,I_chr2R_13409412_13410357,RI_chr2R_13409412_13411004,I_chr2R_13409412_13411328,I_chr2R_13409412_13411588,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13409406_13411588 chr2R_13409406_13411004;chr2R_13411077_13411328;chr2R_13411404_13411588 chr2R_13411005_13411076;chr2R_13411329_13411403 chr2R_13409337_13409405;chr2R_13411589_13411688 16.13 14.29 NA 36.36 7.14 NA NA 23.08 12.00 NA 18.18 16.13 NA 7.69 10.00 33.33 28.57 20.00 36.36 20.83 NA 5.00 11.11 13.04 14.29 15.38 36.36 5.26 NA 18.18 27.27 14.29 16.67 20.00 20.00 12.50 19.05 30.00 8.33 8.33 10.00 10.00 NA 22.22 10.00 19.05 NA NA 15.00 28.57 22.22 36.36 NA 14.29 14.29 12.50 NA 30.00 K jcn_only_AA CG4267,I_chr2L_2245495_2245550 chr2L + chr2L_2242592_2242696 chr2L_2242592_2242692 chr2L_2242390_2242591;chr2L_2242697_2242945 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 95.83 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 NA 100.00 NA 100.00 100.00 95.65 100.00 NA 96.88 97.30 97.92 100.00 100.00 100.00 100.00 95.45 NA NA 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor m-cup chr3R - chr3R_12971775_12971841 chr3R_12971778_12971841 chr3R_12971842_12972385;chr3R_12971649_12971774 100.00 100.00 100.00 100.00 100.00 90.91 100.00 92.31 100.00 NA NA 93.33 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 NA 90.00 100.00 92.31 100.00 NA 100.00 NA 91.67 92.86 100.00 100.00 100.00 100.00 94.74 NA 100.00 88.89 100.00 100.00 100.00 100.00 100.00 91.67 88.89 100.00 91.67 100.00 100.00 85.71 NA K intron_retention opa1-like,I_chr2R_10119470_10120234,I_chr2R_10121848_10121900,I_chr2R_10122128_10122197,I_chr2R_10122334_10122393 chr2R - chr2R_10121067_10121121 chr2R_10121066_10121067;chr2R_10121121_10121122 chr2R_10120693_10121066;chr2R_10121122_10121711 0.00 0.00 0.00 0.96 0.00 1.83 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RhoGAP71E,I_chr3L_15583097_15589765 chr3L + chr3L_15595616_15599758 chr3L_15595615_15595616;chr3L_15599758_15599759 chr3L_15594743_15595615;chr3L_15599759_15600439 15.79 16.18 11.27 16.33 12.24 12.79 20.55 20.29 13.33 8.73 10.00 11.95 48.15 17.86 14.93 17.11 18.00 8.47 17.39 13.64 16.28 17.57 23.96 25.76 17.39 14.63 25.76 25.77 15.69 6.82 18.46 11.49 5.77 16.85 14.74 9.89 11.81 12.99 27.03 11.74 7.58 14.29 16.95 11.88 8.65 13.01 16.33 8.56 15.79 28.57 23.46 23.33 15.49 22.22 16.25 23.40 29.03 10.34 K jcn_only_AD CG11984,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4839215_4839655;chr3R_4839215_4839561;chr3R_4839215_4839851;chr3R_4839215_4839728;chr3R_4839215_4839889 chr3R_4839215_4839799 chr3R_4839038_4839214;chr3R_4839890_4839901 2.33 4.76 4.55 3.33 NA NA NA 0.00 2.33 NA NA 0.00 NA NA NA NA NA NA 0.00 3.33 NA 0.00 0.00 NA NA 9.09 4.00 NA NA NA NA NA NA 4.55 NA NA NA NA NA 8.00 NA 0.00 NA 5.00 NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 4.55 N multi_cassette CG31619,I_chr2L_21725446_21728027 chr2L + chr2L_21719644_21728027 chr2L_21719644_21725067;chr2L_21725446_21727005;chr2L_21727363_21727422;chr2L_21727574_21728027 chr2L_21725068_21725445;chr2L_21727006_21727362;chr2L_21727423_21727573 chr2L_21719514_21719643;chr2L_21728028_21728127 100.00 100.00 100.00 86.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG6659 chrX - chrX_18548224_18548328 chrX_18548223_18548224;chrX_18548328_18548329 chrX_18547964_18548223;chrX_18548329_18548454 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.00 1.71 0.00 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.59 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 K intron_retention cup,I_chr2L_6668135_6668341,CG34310 chr2L + chr2L_6670514_6674300 chr2L_6670513_6670514;chr2L_6674300_6674301 chr2L_6669764_6670513;chr2L_6674301_6674741 0.00 0.00 0.00 2.56 0.00 0.00 0.00 4.88 6.52 NA 4.35 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 4.35 0.00 0.00 2.94 0.00 0.00 K cassette CG32699,I_chrX_9468866_9473514 chrX - chrX_9468866_9473514 chrX_9468866_9468933;chrX_9469080_9473514 chrX_9468934_9469079 chrX_9468766_9468865;chrX_9473515_9473614 100.00 100.00 100.00 95.88 100.00 100.00 98.96 100.00 100.00 100.00 100.00 99.39 100.00 100.00 99.03 99.05 100.00 100.00 100.00 100.00 100.00 100.00 99.24 100.00 98.65 100.00 99.28 100.00 100.00 98.56 96.04 100.00 99.32 100.00 98.85 100.00 99.42 100.00 100.00 99.39 100.00 99.42 100.00 99.08 100.00 98.28 100.00 98.90 100.00 100.00 100.00 100.00 100.00 98.36 99.17 100.00 100.00 100.00 K alternative_acceptor I_chr2R_19695638_19696332,Nxt1,RI_chr2R_19699261_19699317,CG4797 chr2R - chr2R_19699248_19699317 chr2R_19699261_19699317 chr2R_19699318_19699386;chr2R_19699179_19699247 6.50 5.94 6.02 7.53 5.26 4.26 11.11 8.24 4.04 2.80 4.17 5.59 3.64 6.35 3.16 4.55 0.00 3.92 4.05 5.96 7.84 6.93 6.70 8.63 5.68 10.53 7.09 6.33 11.76 7.07 17.48 8.47 5.80 5.71 7.63 8.87 5.08 6.72 8.80 5.29 5.30 6.50 6.52 4.61 8.46 6.83 7.64 5.98 5.30 6.94 8.59 5.88 8.03 6.49 6.59 7.56 7.86 8.12 K intron_retention l(1)G0196,I_chrX_21900456_21903880,RI_chrX_21900456_21904036,I_chrX_21900456_21904601,noncoding_25159,I_chrX_21903160_21903227 chrX + chrX_21900456_21904030 chrX_21900455_21900456;chrX_21904030_21904031 chrX_21900356_21900455;chrX_21904031_21904141 12.90 7.41 11.32 24.00 13.89 13.64 10.13 11.39 14.00 15.79 17.24 24.59 14.29 12.77 11.36 11.84 15.38 4.26 6.90 17.53 9.30 19.15 13.10 14.29 7.32 5.71 21.57 8.70 0.00 19.51 7.25 25.00 18.52 20.83 14.63 21.88 9.09 11.11 6.25 13.64 7.41 13.33 22.58 7.58 12.90 15.52 10.17 26.47 12.96 11.76 9.88 6.98 16.67 7.50 2.99 12.77 8.16 13.79 K alternative_acceptor CG17471,RI_chr4_1213397_1214333,RI_chr4_1213397_1216053,RI_chr4_1214248_1214333,I_chr4_1214293_1214333,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1214248_1214333;chr4_1214293_1214333 chr4_1214281_1214333 chr4_1214334_1214402;chr4_1214193_1214247 100.00 96.30 100.00 90.91 100.00 100.00 98.04 98.04 96.34 100.00 100.00 95.24 96.55 96.43 100.00 93.02 100.00 96.30 97.06 96.30 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 97.96 94.74 91.67 100.00 94.74 100.00 100.00 91.18 98.04 100.00 96.97 100.00 97.56 97.06 96.88 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 97.73 K alternative_donor CG10417,RI_chr2R_1248452_1248523 chr2R - chr2R_1250261_1250567 chr2R_1250261_1250334 chr2R_1250133_1250260;chr2R_1250568_1250611 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 98.04 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 96.97 90.91 100.00 100.00 100.00 100.00 92.31 100.00 100.00 83.33 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 96.67 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Trxr-1 chrX + chrX_8136765_8140126 chrX_8136764_8136765;chrX_8140126_8140127 chrX_8136556_8136764;chrX_8140127_8140472 0.00 0.00 0.00 0.30 0.00 0.00 0.38 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.71 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 K alternative_donor Pk61C,I_chr3L_143454_143514 chr3L + chr3L_143218_143514 chr3L_143454_143514 chr3L_143515_143614;chr3L_142943_143217 4.55 2.44 6.82 4.82 2.17 2.94 10.34 3.41 0.81 6.67 2.13 6.74 3.57 3.92 5.77 4.21 2.70 10.42 5.77 3.19 0.00 6.52 4.65 6.25 4.00 4.08 6.82 16.67 31.25 5.00 4.44 7.69 16.67 4.44 3.23 4.00 2.78 12.50 8.33 5.66 4.55 5.49 5.00 3.57 6.25 2.94 3.45 12.50 5.81 5.88 3.28 2.70 4.55 5.26 3.57 3.33 4.00 6.90 K intron_retention I_chr3L_18892015_18892405,RpL26,I_chr3L_18892244_18892405,I_chr3L_18892340_18892405,I_chr3L_18892434_18892499 chr3L + chr3L_18892340_18892405 chr3L_18892339_18892340;chr3L_18892405_18892406 chr3L_18892334_18892339;chr3L_18892406_18892433 89.18 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 100.00 74.19 NA NA NA 100.00 NA NA NA NA NA NA 87.50 87.50 NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA NA NA 89.47 K intron_retention CG30105 chr2R - chr2R_13479769_13479897 chr2R_13479768_13479769;chr2R_13479897_13479898 chr2R_13479533_13479768;chr2R_13479898_13479911 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 96.55 94.44 100.00 95.83 100.00 100.00 100.00 95.45 100.00 NA 100.00 94.12 100.00 NA 100.00 95.45 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 95.00 100.00 97.14 100.00 100.00 100.00 100.00 95.24 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19562989_19563061 chr2R_19562988_19562989;chr2R_19563061_19563062 chr2R_19562878_19562988;chr2R_19563062_19563231 1.89 0.88 1.77 3.70 2.23 1.43 1.68 1.08 1.81 3.91 0.78 1.54 1.48 1.09 1.33 0.84 1.11 12.11 0.00 0.66 2.05 11.52 2.25 1.27 5.38 6.45 3.06 4.21 6.61 1.89 2.24 5.74 3.28 1.84 3.87 3.68 1.97 1.53 2.00 1.50 9.64 0.88 0.68 1.21 2.62 2.27 1.01 5.84 1.41 1.90 1.97 2.58 1.91 1.26 1.17 1.60 0.44 1.94 K intron_retention Gga chrX + chrX_9495210_9495286 chrX_9495209_9495210;chrX_9495286_9495287 chrX_9495093_9495209;chrX_9495287_9495402 0.00 3.23 0.00 0.00 0.00 4.76 5.71 6.25 2.78 0.00 0.00 0.00 0.00 0.00 7.41 3.57 0.00 7.41 3.85 3.39 7.41 15.00 3.85 0.00 9.52 8.70 14.29 14.29 40.00 3.45 4.35 0.00 0.00 2.27 0.00 0.00 0.00 0.00 4.17 0.00 NA 4.44 NA 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 6.90 0.00 5.56 0.00 K intron_retention zpg chr3L - chr3L_6598677_6598732 chr3L_6598676_6598677;chr3L_6598732_6598733 chr3L_6598375_6598676;chr3L_6598733_6599142 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.15 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 3.70 0.00 1.89 0.00 0.00 8.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG8889 chr2R - chr2R_7914657_7914727 chr2R_7914663_7914727 chr2R_7914728_7914987;chr2R_7914547_7914656 12.50 NA NA NA NA NA 7.69 NA 11.11 NA NA 12.50 NA NA NA NA NA NA NA 9.09 NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 6.25 NA NA NA NA NA NA NA NA 13.33 NA NA 14.29 NA NA NA NA NA NA K intron_retention bdg,I_chr2R_11824086_11824186,CEI_chr2R_11826763_11827279 chr2R - chr2R_11815130_11819241 chr2R_11815129_11815130;chr2R_11819241_11819242 chr2R_11814250_11815129;chr2R_11819242_11819419 5.88 0.00 3.12 11.11 0.00 9.09 0.00 8.93 6.85 0.00 0.00 11.94 5.26 5.71 6.82 7.14 5.88 7.14 5.41 6.52 0.00 5.00 3.57 7.55 9.09 11.76 10.34 8.33 0.00 6.90 5.88 7.14 0.00 8.47 6.52 7.89 2.50 5.00 5.41 8.06 0.00 7.35 6.25 0.00 6.25 3.23 6.67 4.76 7.69 0.00 5.71 6.67 NA NA 5.41 7.41 0.00 0.00 K intron_retention CG11523 chr3L - chr3L_22259087_22259175 chr3L_22259086_22259087;chr3L_22259175_22259176 chr3L_22258906_22259086;chr3L_22259176_22259747 94.12 93.33 93.33 96.00 100.00 100.00 95.24 92.68 100.00 NA 92.86 96.77 80.00 94.44 100.00 96.97 100.00 100.00 90.00 87.10 100.00 84.62 88.89 100.00 NA 94.12 100.00 NA 93.75 92.31 95.00 84.62 96.00 96.88 88.89 84.62 90.00 NA 83.33 84.00 86.67 97.14 100.00 NA 95.83 91.67 100.00 88.57 100.00 100.00 90.91 90.91 88.89 90.00 94.12 93.75 100.00 98.33 K alternative_acceptor CG32138 chr3L + chr3L_14062497_14063021 chr3L_14062497_14062991 chr3L_14062186_14062496;chr3L_14063022_14063741 98.11 98.73 96.08 98.28 97.96 97.73 98.59 98.73 98.55 91.07 100.00 99.21 98.11 98.00 96.30 98.53 100.00 88.89 98.18 97.74 98.28 98.67 99.17 96.08 96.77 98.18 98.63 100.00 95.74 98.28 96.49 97.37 97.78 98.72 98.33 100.00 97.76 97.70 98.99 96.15 89.80 95.49 91.49 98.81 90.57 98.53 97.85 90.32 99.00 96.67 96.61 98.33 98.59 100.00 95.16 98.85 96.21 92.31 K intron_retention CG12567,I_chr2LHet_21570_31874 chr2LHet - chr2LHet_21374_21435 chr2LHet_21373_21374;chr2LHet_21435_21436 chr2LHet_21308_21373;chr2LHet_21436_21569 41.38 NA 46.67 39.29 46.15 40.00 28.21 41.38 45.16 NA 30.77 39.29 63.64 46.15 56.25 45.45 38.46 41.67 43.48 40.91 NA NA 53.85 41.67 30.77 23.53 58.82 NA NA NA 29.17 NA NA 44.12 NA 30.77 NA 30.77 33.33 42.11 NA 47.83 42.11 33.33 NA 25.00 NA NA 50.00 NA 50.00 35.71 NA NA 22.73 35.71 NA NA K intron_retention CG33558,I_chr2R_2813804_2817753,I_chr2R_2814327_2817753,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2816342_2816577 chr2R_2816341_2816342;chr2R_2816577_2816578 chr2R_2816242_2816341;chr2R_2816578_2816778 5.71 4.88 0.00 5.26 10.00 NA 17.65 3.70 7.04 4.00 0.00 6.52 NA 9.52 12.90 NA 16.67 12.50 9.09 8.70 0.00 1.85 2.80 5.41 0.00 NA 4.76 0.00 0.00 6.82 11.11 7.41 0.00 7.89 4.65 7.69 6.52 4.55 7.41 6.56 0.00 11.11 10.53 5.77 1.04 3.51 5.56 3.03 7.84 3.81 6.38 7.41 5.88 3.17 8.70 5.26 5.71 0.00 K intron_retention CG1753,noncoding_25029 chrX + chrX_20918440_20918583 chrX_20918439_20918440;chrX_20918583_20918584 chrX_20918217_20918439;chrX_20918584_20919625 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.42 0.27 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.17 0.59 0.00 0.00 0.00 0.38 0.65 0.98 0.40 0.00 0.00 0.00 0.42 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 1.31 K cassette Mmp2,I_chr2R_5503009_5545098,noncoding_5512,F_chr2R_5529263_5530709,F_chr2R_5530982_5545098,F_chr2R_5549824_5554869 chr2R - chr2R_5503009_5554869 chr2R_5503009_5530709;chr2R_5530982_5554869 chr2R_5530710_5530981 chr2R_5502983_5503008;chr2R_5554870_5554963 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.65 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 5.00 0.00 2.15 1.67 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.94 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 K alternative_acceptor CG2478,I_chr2L_20653491_20653552 chr2L - chr2L_20653491_20653552 chr2L_20653499_20653552 chr2L_20653553_20653652;chr2L_20653391_20653490 92.86 100.00 88.24 87.50 93.33 91.67 90.00 97.06 97.67 80.00 100.00 95.65 92.31 90.91 94.12 94.74 92.86 90.00 100.00 100.00 100.00 96.43 92.86 81.82 87.50 100.00 100.00 100.00 90.91 90.00 93.75 88.89 95.45 100.00 92.31 88.89 93.75 87.50 NA 90.00 91.67 100.00 92.31 100.00 91.67 91.67 NA 80.00 100.00 100.00 90.91 90.91 NA NA 94.12 NA 100.00 91.67 K jcn_only_AD LSm7 chr2L - chr2L_16742443_16742634;chr2L_16742443_16742662 chr2L_16742443_16742625 chr2L_16742326_16742442;chr2L_16742663_16742986 95.12 93.18 93.51 92.03 93.55 92.54 96.88 93.20 99.44 94.87 93.22 96.77 98.16 96.23 94.81 96.04 91.84 97.70 94.95 95.28 90.32 97.96 93.24 96.59 97.92 93.94 97.53 90.91 93.75 95.92 98.72 97.78 89.66 95.62 98.18 NA 93.07 96.25 95.80 92.59 93.65 95.65 96.88 94.12 92.00 90.43 96.72 91.67 96.25 97.89 98.98 98.04 94.87 98.36 88.29 98.08 93.99 91.04 K alternative_donor CG10359,CG10357 chr3L + chr3L_3613883_3614069 chr3L_3613961_3614069 chr3L_3614070_3614253;chr3L_3613749_3613882 0.00 0.00 0.00 1.72 5.00 0.00 0.00 2.27 2.00 6.67 14.29 0.00 0.00 0.00 0.00 2.86 0.00 4.76 0.00 5.88 10.53 0.00 0.00 0.00 7.14 0.00 0.00 NA 4.35 NA 2.00 0.00 0.00 2.38 0.00 NA 0.00 0.00 0.00 0.00 5.00 4.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 NA NA 3.85 5.88 2.50 0.00 K alternative_last_exon sina chr3L + chr3L_16847053_16849396 chr3L_16847053_16847119 chr3L_16849397_16852050 chr3L_16847120_16847625 chr3L_16846848_16847052 94.74 95.24 95.24 97.44 93.33 94.12 97.22 97.87 98.21 92.86 94.74 95.74 95.65 96.00 96.30 95.45 94.74 94.12 96.55 94.44 93.33 94.74 96.88 95.65 88.89 94.74 91.30 91.67 93.75 95.65 95.00 91.67 96.15 98.04 93.75 95.24 92.00 94.12 91.67 96.97 93.33 97.50 91.67 95.83 84.62 95.45 94.12 96.55 97.96 88.24 96.55 94.44 93.75 91.67 96.55 93.33 81.25 100.00 K cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27784850_27805244;chr3R_27795508_27801169;chr3R_27784850_27801169;chr3R_27795508_27805244 chr3R_27795508_27798223,chr3R_27784850_27798223;chr3R_27798276_27805244,chr3R_27798276_27801169 chr3R_27798224_27798275 chr3R_27784757_27784849;chr3R_27805245_27805341 4.30 NA NA 5.88 NA NA NA 0.00 7.69 NA NA 0.00 6.67 NA 0.00 0.00 NA NA 0.00 4.76 NA NA NA NA NA 0.00 6.25 NA NA NA 0.00 NA NA 5.56 NA NA 7.69 NA NA 0.00 NA 3.45 7.69 NA NA NA NA 14.29 3.85 0.00 7.14 NA NA NA 12.50 NA NA NA K intron_retention CG32982,I_chr2L_9127467_9148754,EF_chr2L_9135385_9148841,F_chr2L_9149162_9154658 chr2L + chr2L_9162709_9163140 chr2L_9162708_9162709;chr2L_9163140_9163141 chr2L_9162363_9162708;chr2L_9163141_9163660 0.00 0.00 0.00 11.11 0.00 5.00 0.00 0.00 4.84 0.00 0.00 4.08 NA 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 2.06 4.00 0.00 3.45 0.00 5.08 3.77 4.69 0.00 6.45 0.00 2.56 2.70 2.94 5.00 0.00 0.00 3.33 0.00 0.00 0.00 NA 0.00 0.00 1.67 3.28 2.13 2.22 0.00 3.03 2.70 4.76 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor Nos,I_chr2L_10826086_10826539 chr2L - chr2L_10812355_10812463 chr2L_10812415_10812463 chr2L_10812464_10812494;chr2L_10812311_10812354 42.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 42.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor bgm,RI_chr2L_14017027_14018034 chr2L + chr2L_14017027_14018034 chr2L_14017038_14018034 chr2L_14018035_14018134;chr2L_14016927_14017026 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA K intron_retention CG11779,CG5835,I_chr3R_14982295_14982380 chr3R - chr3R_14977336_14979117 chr3R_14977335_14977336;chr3R_14979117_14979118 chr3R_14977211_14977335;chr3R_14979118_14979355 0.00 NA NA NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 6.45 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 K intron_retention YL-1,CG16743 chr2L + chr2L_10971258_10971316 chr2L_10971257_10971258;chr2L_10971316_10971317 chr2L_10970957_10971257;chr2L_10971317_10971978 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.88 0.00 0.00 3.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 3.92 2.94 0.00 0.00 2.70 5.26 5.26 8.93 0.00 0.00 0.00 4.17 0.00 0.00 0.00 2.50 0.00 0.00 0.98 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Pli,I_chr3R_19691378_19715415 chr3R - chr3R_19714842_19715415 chr3R_19714914_19715415 chr3R_19715416_19715515;chr3R_19714779_19714841 100.00 NA 100.00 100.00 NA NA 100.00 100.00 96.97 NA NA 100.00 NA NA 100.00 96.30 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 94.29 96.88 NA 96.30 NA NA NA 100.00 100.00 NA NA NA NA NA 95.65 NA NA 100.00 K mutually_exclusive babo chr2R + chr2R_4842357_4842463,chr2R_4842673_4846611;chr2R_4842357_4844533,chr2R_4844662_4846611 chr2R_4842357_4843217,chr2R_4843364_4846611 chr2R_4842464_4842672;chr2R_4844534_4844661 chr2R_4843218_4843363 chr2R_4842239_4842356;chr2R_4846612_4846839 48.09 54.55 40.00 56.25 50.00 36.36 31.71 50.00 45.24 55.56 57.14 45.31 66.67 52.94 42.86 53.12 13.33 45.45 45.00 66.67 50.00 14.29 46.43 47.62 40.00 40.00 52.17 NA 40.00 42.86 54.17 60.00 45.45 57.58 50.00 62.50 54.55 41.18 54.55 31.82 NA 48.57 46.67 52.17 0.00 40.00 50.00 53.33 42.86 50.00 52.17 60.00 28.57 NA 42.11 40.00 12.50 62.50 K alternative_donor CG15347,I_chrX_8353371_8353552,I_chrX_8353371_8354203,I_chrX_8353497_8353552 chrX - chrX_8353371_8354798 chrX_8353371_8353552 chrX_8353271_8353370;chrX_8354799_8354949 0.00 0.00 0.00 0.77 0.00 0.00 1.06 0.43 0.29 0.00 0.00 0.43 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.07 0.29 0.00 0.00 0.00 0.32 0.71 0.47 0.00 0.00 0.00 0.00 0.34 0.47 0.93 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.27 0.23 0.00 0.00 0.00 0.47 0.00 0.00 0.00 K intron_retention tra2,REFI_chr2R_10491644_10491701 chr2R - chr2R_10491634_10491701 chr2R_10491633_10491634;chr2R_10491701_10491702 chr2R_10491620_10491633;chr2R_10491702_10491801 19.62 NA 21.43 30.77 NA NA 4.17 27.78 0.00 NA NA 19.23 NA NA NA 6.67 NA NA 15.38 17.24 NA 28.57 28.57 45.45 NA 36.36 75.00 NA NA NA 33.33 NA NA NA 25.00 15.38 13.33 10.53 NA 20.00 NA 30.77 NA NA NA 11.76 20.00 NA 17.86 NA 7.69 NA NA NA NA 7.14 19.05 23.53 N intron_retention CG2765,RI_chr2R_20849027_20852094,E_chr2R_20849271_20852090,E_chr2R_20851190_20852094 chr2R - chr2R_20851994_20852094 chr2R_20851993_20851994;chr2R_20852094_20852095 chr2R_20851933_20851993;chr2R_20852095_20852190 79.70 72.97 83.10 100.00 74.19 85.11 69.23 69.44 71.43 100.00 100.00 65.12 100.00 81.58 73.68 100.00 71.11 100.00 80.00 67.53 81.25 100.00 81.63 69.44 100.00 100.00 81.48 100.00 54.84 67.65 80.43 100.00 79.41 79.41 82.50 66.67 71.88 75.68 73.68 71.43 100.00 78.02 71.43 75.00 NA 100.00 100.00 68.29 74.07 100.00 77.08 100.00 NA NA 75.00 NA NA 100.00 K jcn_only_AD sick chr2L + chr2L_19929355_19954552 chr2L_19946703_19954552 chr2L_19954553_19956399 24.00 NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA NA NA NA 23.08 NA 12.24 27.27 30.00 NA NA NA NA 14.29 NA NA NA 13.51 NA NA NA 33.33 NA NA NA NA 24.00 NA NA NA NA NA 41.67 20.83 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG6623,I_chr3R_11040813_11040964,I_chr3R_11042070_11042139 chr3R - chr3R_11042070_11042139 chr3R_11042081_11042139 chr3R_11042140_11042239;chr3R_11041970_11042069 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 95.24 NA 100.00 93.75 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 NA 93.33 100.00 90.00 100.00 91.67 92.31 NA 100.00 100.00 80.00 100.00 100.00 100.00 100.00 91.67 88.89 88.89 92.31 95.65 100.00 100.00 100.00 92.86 100.00 100.00 88.89 88.89 100.00 88.89 92.86 NA 87.50 100.00 100.00 100.00 94.44 100.00 K intron_retention shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9754809_9757364 chr2R_9754808_9754809;chr2R_9757364_9757365 chr2R_9754798_9754808;chr2R_9757365_9757464 5.26 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.26 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette Eps-15,I_chr2R_20660319_20660496 chr2R - chr2R_20660319_20660734 chr2R_20660319_20660496;chr2R_20660527_20660734 chr2R_20660497_20660526 chr2R_20660219_20660318;chr2R_20660735_20660822 74.29 69.57 77.50 46.25 68.18 78.79 32.43 74.00 72.00 78.26 75.00 85.00 91.30 70.83 82.35 71.11 78.95 67.86 78.26 85.88 82.61 74.29 65.00 80.28 78.57 37.84 77.55 100.00 51.22 73.81 60.00 90.00 67.11 74.58 80.00 47.92 82.19 84.44 79.10 79.49 63.16 77.78 65.38 73.91 66.67 72.41 75.00 66.67 73.85 78.12 76.27 82.35 62.79 80.00 60.00 72.22 62.26 63.16 K intron_retention TBPH,I_chr2R_19748981_19749882,I_chr2R_19748981_19749921,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19748981_19750012 chr2R_19748980_19748981;chr2R_19750012_19750013 chr2R_19748884_19748980;chr2R_19750013_19750013 84.62 86.36 82.61 85.37 81.82 83.33 91.67 76.92 93.51 77.78 89.47 82.35 89.66 83.33 75.86 81.63 86.21 85.19 80.65 81.25 88.89 85.00 91.67 80.95 90.48 84.38 94.74 91.67 77.27 88.24 57.14 65.00 80.65 86.79 100.00 95.00 93.33 85.71 73.53 83.33 86.96 84.62 80.95 93.75 90.00 80.00 76.47 80.00 88.52 84.00 77.78 68.75 90.00 92.86 88.57 72.00 85.71 77.27 K jcn_only_AD CG31301,I_chr3R_11172776_11172930,RI_chr3R_11173123_11173185 chr3R + chr3R_11173123_11173185 chr3R_11173128_11173185 chr3R_11173186_11173254;chr3R_11173059_11173122 100.00 100.00 97.73 98.94 100.00 97.37 100.00 99.05 99.04 100.00 100.00 98.90 95.00 95.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.68 100.00 100.00 98.08 100.00 100.00 100.00 100.00 100.00 96.95 100.00 100.00 100.00 100.00 100.00 98.48 100.00 98.82 98.96 100.00 100.00 100.00 97.97 100.00 100.00 98.23 100.00 97.14 95.74 97.96 98.18 98.68 100.00 100.00 99.62 K cassette RI_chr2R_12912984_12913058,RhoGEF2 chr2R + chr2R_12922514_12924321 chr2R_12922514_12923159;chr2R_12923913_12924321 chr2R_12923160_12923912 chr2R_12922340_12922513;chr2R_12924322_12924406 98.94 98.33 100.00 98.99 97.92 96.43 97.70 98.90 99.32 97.92 97.06 100.00 96.36 98.28 98.33 100.00 98.08 100.00 100.00 99.21 100.00 98.61 99.16 100.00 98.33 96.49 100.00 100.00 100.00 100.00 100.00 100.00 98.10 97.00 96.83 100.00 98.36 98.44 98.94 99.19 100.00 100.00 100.00 96.84 100.00 100.00 97.56 99.05 98.23 98.11 97.85 98.21 100.00 100.00 98.57 100.00 96.97 98.04 K multi_cassette CG32521,CREF_chrX_21082827_21152068,EF_chrX_21094675_21152068,CG1722 chrX - chrX_21082827_21152072 chrX_21082827_21094606;chrX_21094675_21150208;chrX_21150214_21152072 chrX_21094607_21094674;chrX_21150209_21150213 chrX_21082727_21082826;chrX_21152073_21152168 8.39 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA K intron_retention CG3744,I_chr3R_20701248_20701968 chr3R - chr3R_20698134_20698375 chr3R_20698133_20698134;chr3R_20698375_20698376 chr3R_20697941_20698133;chr3R_20698376_20698598 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 5.26 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.26 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette cp309,I_chr3L_15074145_15074432 chr3L - chr3L_15066431_15067783;chr3L_15066295_15067783 chr3L_15066295_15067424,chr3L_15066431_15067424;chr3L_15067593_15067783 chr3L_15067425_15067592 chr3L_15066244_15066294;chr3L_15067784_15068947 22.66 21.43 41.67 19.05 NA 30.00 19.05 12.50 24.14 15.00 13.33 36.36 NA 16.67 30.77 33.33 18.18 0.00 16.67 22.73 30.77 25.00 43.75 28.57 37.50 12.50 17.65 NA NA 46.15 37.50 NA 33.33 43.75 20.00 18.75 33.33 36.36 NA 17.65 NA 29.17 18.18 22.22 NA NA 42.86 NA 22.58 NA 18.75 NA NA NA 18.75 NA NA NA K alternative_donor CG9932,I_chr2L_13025498_13027193,I_chr2L_13031395_13035824 chr2L - chr2L_13025498_13026528;chr2L_13025498_13027344 chr2L_13025498_13027065 chr2L_13025398_13025497;chr2L_13027345_13027744 22.69 13.79 35.48 28.57 16.67 35.71 27.78 41.94 22.06 12.24 40.48 35.11 55.81 24.53 26.79 28.21 35.42 22.92 39.29 25.44 29.55 17.39 19.19 15.94 15.69 21.95 22.08 18.42 24.07 24.36 30.19 25.64 22.69 25.53 24.62 16.67 15.00 8.47 16.04 4.59 24.44 27.87 16.22 21.79 23.21 20.31 16.67 22.00 27.78 19.35 18.75 16.67 17.02 18.92 30.65 19.15 16.67 28.00 K intron_retention I_chr3R_8822346_8822403,CG7518 chr3R + chr3R_8832937_8833113 chr3R_8832936_8832937;chr3R_8833113_8833114 chr3R_8832068_8832936;chr3R_8833114_8833120 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 95.83 100.00 100.00 100.00 96.55 K jcn_only_AD Mtch,RI_chr3L_184729_185366,E_chr3L_185249_186012,EI_chr3L_185308_185366,I_chr3L_185367_185925 chr3L + chr3L_185304_185366;chr3L_184729_185366 chr3L_185308_185366 chr3L_185367_185441;chr3L_184713_184728 0.41 0.00 0.00 0.00 0.00 0.62 0.46 0.74 0.31 2.56 0.75 0.00 0.71 0.70 0.00 0.81 1.43 0.00 0.51 0.00 0.00 0.61 0.00 0.44 0.00 0.00 0.53 1.37 1.92 0.00 2.13 0.00 0.41 0.40 0.00 0.00 0.47 0.00 0.53 0.34 0.44 0.32 1.39 0.00 0.00 0.71 0.00 0.00 0.99 1.19 0.00 1.44 0.00 1.12 0.49 0.00 1.63 1.01 K intron_retention CtBP chr3R + chr3R_8837881_8845063 chr3R_8837880_8837881;chr3R_8845063_8845064 chr3R_8837730_8837880;chr3R_8845064_8845536 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 K jcn_only_AA CG12582 chr3R + chr3R_29885_29987;chr3R_29885_29934 chr3R_29885_29940 chr3R_29816_29884;chr3R_29988_30053 3.02 3.02 4.15 4.51 2.09 4.27 3.30 4.51 2.99 3.23 2.76 2.24 3.02 2.31 3.62 4.70 4.04 3.59 3.93 3.17 3.04 2.38 2.16 2.54 3.23 2.79 2.61 3.93 2.95 3.84 6.34 4.10 2.57 1.34 3.36 10.69 2.43 1.91 2.50 3.33 2.51 3.02 2.00 2.59 1.61 2.22 1.86 2.80 3.89 3.17 2.78 2.52 3.91 2.96 3.26 3.50 1.22 3.69 K alternative_donor CG17508,RI_chr2R_1496995_1497120 chr2R + chr2R_1496337_1496517;chr2R_1496341_1496517;chr2R_1496303_1496517 chr2R_1496288_1496517 chr2R_1496518_1496994;chr2R_1496153_1496287 0.00 0.00 0.00 0.00 0.00 0.00 1.96 1.22 0.00 0.00 0.00 1.14 0.00 0.00 0.00 1.10 3.85 5.88 1.64 1.22 0.00 0.00 0.00 2.70 3.70 2.17 2.56 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 2.33 0.00 3.57 0.00 0.00 0.00 1.96 0.00 2.08 0.00 0.00 0.00 2.08 0.00 0.00 0.00 K jcn_only_AD Dek chr2R + chr2R_12743809_12744310 chr2R_12743821_12744310 chr2R_12744311_12744557;chr2R_12743780_12743808 7.27 7.07 6.06 10.76 6.59 8.51 7.37 4.40 8.42 5.15 16.67 5.49 7.48 10.10 6.56 8.76 7.27 13.83 6.41 5.89 12.50 5.07 4.83 8.03 4.10 6.45 8.60 4.17 7.74 7.98 12.24 4.15 5.87 5.16 2.70 12.22 3.94 7.69 8.23 7.56 5.05 7.34 6.25 7.27 4.45 10.07 11.11 6.31 5.95 15.09 10.06 6.25 2.60 9.52 9.92 11.76 13.33 5.24 K intron_retention Dpit47 chr2R - chr2R_2548747_2548803 chr2R_2548746_2548747;chr2R_2548803_2548804 chr2R_2548142_2548746;chr2R_2548804_2549667 4.41 2.53 4.92 3.37 7.55 10.45 3.90 7.23 4.72 5.00 0.00 3.23 3.77 6.15 5.49 6.06 5.56 5.06 3.51 4.65 3.77 5.88 5.10 6.09 7.14 14.49 5.06 3.39 14.63 2.82 7.14 1.00 3.41 4.00 8.96 3.39 3.77 2.90 3.48 2.96 4.60 5.44 3.64 8.22 2.94 5.13 4.00 4.41 3.51 2.70 5.32 2.94 3.45 2.83 4.76 6.96 1.14 3.23 K intron_retention scaf6,EI_chr3L_17037760_17037808 chr3L - chr3L_17035141_17035202 chr3L_17035140_17035141;chr3L_17035202_17035203 chr3L_17034794_17035140;chr3L_17035203_17035373 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 K intron_retention I_chr2R_2754447_2755071,Spn4,CG9454 chr2R - chr2R_2764032_2764725 chr2R_2764031_2764032;chr2R_2764725_2764726 chr2R_2763778_2764031;chr2R_2764726_2764867 75.00 86.67 75.00 65.22 90.00 83.33 66.67 88.89 78.95 NA 75.00 78.95 76.92 61.54 75.00 90.91 88.89 NA 84.62 77.78 NA NA 63.16 70.59 66.67 90.00 83.33 87.50 NA 90.00 89.47 58.33 NA 72.00 75.00 57.14 88.89 NA 68.75 75.00 83.33 84.00 75.00 90.91 60.00 70.00 52.63 NA 79.17 66.67 78.57 NA 63.64 75.00 71.43 92.31 61.11 55.56 K jcn_only_AD lin chr2R + chr2R_4802513_4802569;chr2R_4802505_4802569 chr2R_4802509_4802569 chr2R_4802570_4805741;chr2R_4802033_4802504 3.70 0.00 2.33 4.55 7.41 0.00 2.94 5.77 2.17 9.52 5.71 5.62 2.70 8.11 3.92 2.17 13.33 6.25 3.12 3.88 13.04 0.00 1.16 4.11 4.00 4.44 4.00 2.22 0.00 4.55 2.22 3.70 5.56 2.99 3.85 8.82 3.37 5.33 5.93 8.16 2.38 6.67 2.86 5.56 2.00 16.67 0.00 5.15 7.04 2.38 2.74 0.00 0.00 0.00 0.00 0.00 3.03 1.72 K intron_retention CG6904,I_chr3R_10970962_10971422,I_chr3R_10970962_10972151,I_chr3R_10970962_10972185,I_chr3R_10970962_10972512,I_chr3R_10970962_10972522 chr3R - chr3R_10970962_10973196 chr3R_10970961_10970962;chr3R_10973196_10973197 chr3R_10970862_10970961;chr3R_10973197_10973329 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 K jcn_only_AA Gprk2 chr3R + chr3R_27231679_27259180 chr3R_27231679_27236075 chr3R_27230999_27231678 56.60 60.00 76.32 64.15 52.50 73.53 38.58 54.26 62.50 NA 41.03 45.68 56.60 68.75 58.82 64.77 63.83 56.25 75.00 68.85 47.06 51.11 71.11 61.36 36.00 54.55 44.44 42.31 44.74 46.88 63.89 NA 35.90 55.67 72.73 29.03 61.11 56.00 68.00 62.50 43.75 51.92 69.77 65.91 NA 47.73 NA 61.67 66.67 NA 62.50 50.00 NA NA 63.01 NA 52.38 33.33 K alternative_last_exon Snx6,RI_chr2L_8218680_8218853,I_chr2L_8230332_8238998 chr2L - chr2L_8218680_8219115 chr2L_8218872_8219115 chr2L_8218570_8218679 chr2L_8218803_8218871 chr2L_8219116_8219215 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Asx chr2R + chr2R_10391643_10392672 chr2R_10391875_10392672 chr2R_10392673_10392987;chr2R_10391514_10391642 98.36 96.30 100.00 100.00 NA 95.45 98.00 98.25 98.41 NA 100.00 97.96 84.62 100.00 93.75 97.10 100.00 95.65 96.15 98.59 100.00 100.00 97.67 100.00 95.45 95.24 96.67 100.00 100.00 100.00 96.77 NA 100.00 98.36 100.00 94.59 NA NA 100.00 96.30 NA 100.00 NA 100.00 NA NA 91.30 100.00 100.00 NA 97.87 NA NA NA 95.00 NA NA NA K alternative_donor cact,RI_chr2L_16314859_16315116,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16325055_16325577;chr2L_16325055_16325493 chr2L_16325055_16325587 chr2L_16324333_16325054;chr2L_16325588_16325598 0.00 0.00 0.00 1.54 0.00 0.00 2.44 0.00 1.22 0.00 3.03 1.56 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 2.44 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 2.94 0.00 0.00 0.00 0.00 1.49 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N cassette JhI-21,I_chr2L_12055360_12055714 chr2L - chr2L_12053925_12054302 chr2L_12053925_12053981;chr2L_12054085_12054302 chr2L_12053982_12054084 chr2L_12053657_12053924;chr2L_12054303_12054498 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 100.00 100.00 98.17 100.00 91.39 100.00 100.00 100.00 100.00 100.00 100.00 92.92 100.00 100.00 98.48 99.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG30187,F_chr2R_18804786_18805198,F_chr2R_18805721_18805778,I_chr2R_18820842_18820922 chr2R - chr2R_18804993_18805056 chr2R_18804992_18804993;chr2R_18805056_18805057 chr2R_18804874_18804992;chr2R_18805057_18805072 9.41 8.96 8.96 8.82 12.50 10.42 14.55 8.59 7.01 6.25 9.80 7.46 9.46 12.70 11.76 10.11 3.28 6.67 12.33 7.65 10.00 13.79 13.79 7.59 21.88 25.00 17.65 26.83 31.03 8.00 20.19 0.00 9.76 7.94 9.09 16.28 7.81 7.81 8.47 11.86 15.79 6.40 8.93 7.07 13.95 7.46 5.56 11.11 11.40 9.41 9.09 12.20 6.67 11.63 9.52 6.78 8.70 9.09 K alternative_donor CG3635,I_chr2L_22179420_22179486 chr2L + chr2L_22175603_22179486 chr2L_22179420_22179486 chr2L_22179487_22179566;chr2L_22175591_22175602 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette f-cup,I_chr3R_9523147_9523556,EI_chr3R_9523187_9523556,I_chr3R_9524004_9524059,EI_chr3R_9524613_9524789 chr3R - chr3R_9523187_9523556 chr3R_9523187_9523244;chr3R_9523369_9523556 chr3R_9523245_9523368 chr3R_9523087_9523186;chr3R_9523557_9523656 100.00 100.00 100.00 95.65 100.00 100.00 95.24 100.00 100.00 100.00 94.44 97.14 100.00 100.00 100.00 94.74 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention RpL31,CG1827 chr2R + chr2R_5474734_5474951 chr2R_5474733_5474734;chr2R_5474951_5474952 chr2R_5474727_5474733;chr2R_5474952_5475211 0.00 1.10 0.50 0.00 0.00 0.00 0.00 0.42 1.12 0.00 0.00 1.08 0.00 0.00 0.00 1.34 0.00 1.26 0.00 0.49 0.00 0.69 1.35 0.00 0.00 0.00 8.47 0.98 2.29 0.00 1.51 0.00 0.00 0.00 0.00 1.90 0.81 2.78 0.61 0.00 0.83 0.25 0.00 0.00 0.00 1.21 1.10 0.30 0.48 0.00 0.87 0.00 0.41 0.00 0.00 0.56 1.30 0.00 K intron_retention CG6045,I_chr3R_11373181_11373245 chr3R - chr3R_11369392_11369450 chr3R_11369391_11369392;chr3R_11369450_11369451 chr3R_11368495_11369391;chr3R_11369451_11370159 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG7611,I_chr3L_21516702_21517821 chr3L + chr3L_21516706_21517821;chr3L_21516330_21517821;chr3L_21517168_21517821;chr3L_21516722_21517821;chr3L_21516501_21517821;chr3L_21516918_21517821;chr3L_21516343_21517821;chr3L_21516728_21517821 chr3L_21516399_21517821 chr3L_21517822_21517920;chr3L_21516311_21516329 7.69 12.50 9.09 11.76 10.00 7.14 4.35 9.09 5.00 33.33 0.00 11.76 16.67 0.00 11.11 7.69 16.67 7.14 0.00 4.17 0.00 33.33 8.33 0.00 25.00 0.00 12.50 0.00 7.69 0.00 5.00 0.00 0.00 5.56 20.00 0.00 20.00 11.11 14.29 9.52 0.00 7.41 12.50 15.38 0.00 16.67 40.00 0.00 4.55 25.00 10.00 0.00 0.00 50.00 9.09 20.00 0.00 0.00 K jcn_only_AA CG17471,RI_chr4_1213397_1214333,RI_chr4_1213397_1216053,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1213275_1213331;chr4_1213279_1213331 chr4_1213289_1213331 chr4_1213332_1213341;chr4_1213122_1213274 0.00 2.13 0.00 3.23 NA 0.00 0.00 3.12 1.90 NA NA 6.76 2.04 0.00 0.00 3.28 0.00 3.33 0.00 0.00 NA NA 0.00 3.64 0.00 NA 4.55 NA NA 0.00 2.38 4.35 0.00 3.19 2.22 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 4.88 0.00 3.12 6.85 0.00 0.94 0.00 1.37 0.00 0.00 0.00 2.94 3.08 3.17 2.56 K alternative_donor cul-2,I_chr2L_21659273_21659705,I_chr2L_21659761_21659839,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21659273_21659839 chr2L_21659761_21659839 chr2L_21659840_21659939;chr2L_21659173_21659272 4.59 3.49 2.78 10.77 1.72 2.86 7.11 8.82 5.62 1.52 4.84 5.06 11.94 8.47 2.15 10.11 3.45 1.67 5.41 5.16 2.99 4.46 2.78 3.17 4.59 1.19 5.37 6.71 9.64 7.22 5.00 5.41 11.11 5.22 5.33 4.59 2.44 3.15 3.94 5.31 8.00 3.50 6.12 3.15 5.26 6.25 2.94 24.44 3.76 2.60 3.57 4.49 4.44 1.82 2.47 2.60 3.49 16.67 K alternative_donor CG5793,I_chr3R_16953555_16953842 chr3R + chr3R_16953555_16953842 chr3R_16953777_16953842 chr3R_16953843_16953939;chr3R_16953466_16953554 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 NA NA 100.00 100.00 NA 100.00 NA 100.00 NA NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG9987,Rab9 chr2L + chr2L_19432064_19432123 chr2L_19432063_19432064;chr2L_19432123_19432124 chr2L_19430653_19432063;chr2L_19432124_19432451 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.35 0.00 0.79 0.88 1.33 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.64 2.34 7.07 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.33 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Adgf-A,Msi,F_chr3L_17749926_17757161 chr3L - chr3L_17747522_17757161 chr3L_17747521_17747522;chr3L_17757161_17757162 chr3L_17746567_17747521;chr3L_17757162_17757241 5.26 6.00 3.70 5.88 10.20 5.41 5.88 2.94 5.43 1.75 7.27 4.58 5.00 6.33 4.94 4.00 5.56 2.50 3.92 6.22 7.14 3.62 10.26 6.38 7.04 3.28 11.36 10.14 1.14 1.89 6.38 0.00 2.52 5.31 2.70 8.82 5.26 6.25 8.20 2.86 1.91 5.07 3.17 4.03 3.70 2.87 2.94 2.82 11.45 7.69 6.38 4.05 5.63 8.00 8.86 6.25 0.00 0.99 K jcn_only_AD CG3860,I_chr2R_19880382_19880479,I_chr2R_19880577_19880631,RI_chr2R_19882285_19882350 chr2R - chr2R_19880577_19880637 chr2R_19880577_19880631 chr2R_19880480_19880576;chr2R_19880638_19880731 3.51 10.34 0.00 0.00 8.70 NA 2.22 5.56 4.08 NA NA 4.65 4.76 NA 3.23 3.33 4.35 4.76 4.76 0.00 NA 10.00 2.70 0.00 9.52 13.64 8.57 5.00 0.00 5.00 6.06 NA NA 4.44 NA 0.00 3.45 5.00 0.00 0.00 3.57 10.00 4.76 0.00 0.00 0.00 0.00 NA 9.30 2.63 0.00 0.00 5.00 3.33 10.71 2.78 0.00 0.00 K intron_retention CG10321,I_chr2R_17522487_17522896 chr2R + chr2R_17522487_17522885 chr2R_17522486_17522487;chr2R_17522885_17522886 chr2R_17522387_17522486;chr2R_17522886_17526194 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 6.06 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.23 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K jcn_only_AA Hrb87F chr3R - chr3R_9482848_9484183 chr3R_9484020_9484183 chr3R_9484184_9484235;chr3R_9482571_9482847 99.64 100.00 100.00 99.62 99.62 100.00 100.00 99.44 99.70 100.00 100.00 99.60 100.00 99.56 99.14 99.74 100.00 99.10 99.28 99.89 100.00 100.00 99.78 99.33 99.60 99.06 99.72 99.68 99.64 99.89 99.61 99.64 99.90 99.21 99.64 99.37 99.75 99.65 99.60 99.51 99.90 99.57 98.64 99.28 99.78 99.60 99.56 99.82 99.87 100.00 100.00 99.52 98.96 99.28 99.40 99.64 99.70 98.89 K intron_retention CG8858,I_chr2R_8087747_8088193 chr2R - chr2R_8086183_8086307 chr2R_8086182_8086183;chr2R_8086307_8086308 chr2R_8086052_8086182;chr2R_8086308_8086385 0.00 NA 0.00 7.14 0.00 NA 7.14 6.25 2.13 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K alternative_donor CG31278,noncoding_15893,RI_chr3R_6533509_6533568 chr3R - chr3R_6533509_6533568;chr3R_6533509_6533579 chr3R_6533509_6533960 chr3R_6533409_6533508;chr3R_6533961_6534040 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 6.25 0.00 0.00 7.14 0.00 7.14 0.00 0.00 0.00 3.57 7.69 0.00 4.76 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 5.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 4.76 3.85 0.00 5.00 5.88 0.00 0.00 0.00 0.00 K jcn_only_AA Gel,I_chr3R_63540_64006,I_chr3R_63962_64024,I_chr3R_66533_66599 chr3R + chr3R_63540_64024;chr3R_63540_64006 chr3R_63540_63897 chr3R_63440_63539;chr3R_64025_64099 0.49 0.00 0.50 0.00 0.78 0.21 1.40 0.30 0.16 0.00 0.00 0.19 0.87 0.18 0.13 0.90 0.39 0.17 0.49 0.49 0.19 0.58 0.82 0.87 2.94 3.23 0.71 0.00 0.00 0.67 1.26 0.00 0.80 0.33 0.75 1.39 0.63 0.00 0.22 0.64 2.14 0.28 0.66 0.48 0.68 1.29 1.34 0.49 0.35 0.86 0.65 1.56 0.25 0.80 0.13 0.55 0.21 0.38 K intron_retention wol chr2L - chr2L_8302699_8302757 chr2L_8302698_8302699;chr2L_8302757_8302758 chr2L_8302524_8302698;chr2L_8302758_8302984 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.71 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA Smr,I_chrX_12625852_12636351,REI_chrX_12635675_12636351 chrX - chrX_12625938_12636351;chrX_12625852_12636351;chrX_12635693_12636351 chrX_12635675_12636351 chrX_12636352_12636441 92.59 94.44 100.00 89.71 88.46 97.92 86.96 96.63 91.53 100.00 95.65 90.54 100.00 96.55 96.55 87.21 96.43 96.30 92.59 90.41 95.83 NA 91.67 NA NA 91.67 NA 100.00 NA 92.31 88.89 NA 100.00 94.03 100.00 NA NA NA NA 97.87 NA 90.48 88.89 81.82 NA 92.00 NA 88.89 89.74 NA 95.24 87.50 NA NA 94.59 NA NA 86.11 K cassette Parp chr3RHet + chr3RHet_1964749_2025472 chr3RHet_1964749_2018687;chr3RHet_2019258_2025472 chr3RHet_2018688_2019257 chr3RHet_1964716_1964748;chr3RHet_2025473_2025629 100.00 92.86 100.00 95.45 90.00 93.33 95.83 98.65 96.08 NA 100.00 96.77 95.45 100.00 100.00 96.08 95.24 100.00 95.65 96.15 100.00 100.00 87.50 100.00 100.00 90.91 100.00 NA 85.71 100.00 96.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 NA 100.00 88.89 100.00 96.97 80.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG7766,I_chrX_8993495_8994545,I_chrX_8991338_8991387 chrX - chrX_8991547_8991788 chrX_8991546_8991547;chrX_8991788_8991789 chrX_8991388_8991546;chrX_8991789_8992040 0.00 NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA 4.17 NA 9.09 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA 5.56 NA NA NA NA NA 0.00 NA NA NA 0.00 7.14 NA NA NA NA NA 0.00 NA K intron_retention Cg25C chr2L + chr2L_5033951_5034012 chr2L_5033950_5033951;chr2L_5034012_5034013 chr2L_5032500_5033950;chr2L_5034013_5034981 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Adk1,I_chr3L_12194597_12195884,I_chr3L_12194963_12195884,I_chr3L_12197507_12197558 chr3L - chr3L_12194597_12196818 chr3L_12194596_12194597;chr3L_12196818_12196819 chr3L_12194497_12194596;chr3L_12196819_12197320 0.00 0.00 NA NA NA NA NA 0.00 8.70 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 0.00 4.17 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 5.88 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 K jcn_only_AD E_chr4_592469_594231,Ephrin,I_chr4_595055_597604,RI_chr4_596272_596341 chr4 + chr4_592737_594238;chr4_592646_594238;chr4_592490_594238;chr4_592593_594238;chr4_592410_594238;chr4_592798_594238 chr4_592469_594238 chr4_594239_594331;chr4_592404_592409 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention PpV chrX - chrX_6266597_6266684 chrX_6266596_6266597;chrX_6266684_6266685 chrX_6266309_6266596;chrX_6266685_6266861 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 1.34 0.00 0.00 0.00 0.00 0.00 5.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Vha55 chr3R - chr3R_8453298_8453399 chr3R_8453298_8453361 chr3R_8453171_8453297;chr3R_8453400_8453468 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.72 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.47 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.40 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.52 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD kuz,E_chr2L_13550294_13551106,CE_chr2L_13558833_13594255,F_chr2L_13635998_13637287,RI_chr2L_13636519_13636577,I_chr2L_13636762_13637287 chr2L + chr2L_13636762_13637287;chr2L_13636844_13637287 chr2L_13636002_13637287 chr2L_13637288_13637387 68.49 75.00 46.46 22.58 85.19 81.94 40.86 73.17 63.31 60.49 33.82 19.05 79.66 54.55 56.58 41.59 63.49 32.22 64.29 58.24 31.18 74.51 76.19 73.98 60.87 31.63 69.07 68.49 63.37 77.08 56.34 67.80 42.01 75.97 75.82 51.82 71.19 75.68 78.53 76.19 58.44 72.02 62.32 81.51 52.69 60.56 76.06 59.00 75.15 73.81 77.45 77.78 78.16 83.08 68.66 85.19 74.77 66.67 N jcn_only_AA HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13164676_13165514;chrX_13164646_13165514 chrX_13164727_13165514 chrX_13165515_13165622;chrX_13164424_13164645 0.00 0.00 0.00 0.00 0.00 0.00 5.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG14995,I_chr3L_4095875_4097205,I_chr3L_4096047_4096903 chr3L - chr3L_4095123_4095199 chr3L_4095147_4095199 chr3L_4095200_4095293;chr3L_4094504_4095122 3.70 0.00 NA NA NA NA 0.00 0.00 5.56 NA NA 0.00 0.00 NA 14.29 0.00 NA NA NA 9.68 NA 3.70 0.00 5.00 NA NA 0.00 NA 5.26 0.00 0.00 13.33 0.00 12.50 NA NA 0.00 NA NA 6.45 3.33 4.76 NA 4.00 6.67 2.86 5.00 3.70 4.76 5.56 0.00 0.00 NA 5.88 5.56 4.76 11.76 3.45 K intron_retention CG9581,E_chrX_20063603_20063826,RE_chrX_20065682_20066069 chrX - chrX_20063450_20063506 chrX_20063449_20063450;chrX_20063506_20063507 chrX_20062075_20063449;chrX_20063507_20063602 0.00 0.00 0.00 21.74 0.00 0.00 3.45 0.00 8.51 0.00 0.00 5.77 0.00 0.00 0.00 0.00 0.00 0.00 4.55 8.89 4.55 16.67 0.00 0.00 0.00 0.00 8.82 0.00 13.04 0.00 5.26 0.00 0.00 2.78 5.56 3.45 1.72 1.82 0.00 4.55 4.35 0.00 NA 0.00 2.94 0.00 0.00 5.71 0.00 0.00 2.56 0.00 0.00 5.13 0.00 0.00 0.00 0.00 K cassette gus,I_chr2R_1009158_1009345,RI_chr2R_1009158_1011540,I_chr2R_1009346_1015730 chr2R - chr2R_1009158_1015730;chr2R_1009158_1009487 chr2R_1009158_1009277;chr2R_1009346_1015730,chr2R_1009346_1009487 chr2R_1009278_1009345 chr2R_1009058_1009157;chr2R_1015731_1015742 8.62 9.68 11.11 16.67 9.52 8.00 2.08 6.06 13.04 NA 5.00 10.87 12.50 6.45 6.45 5.97 6.67 10.53 11.90 7.55 6.67 NA 10.34 12.00 12.50 3.45 9.52 7.69 0.00 17.65 8.11 21.43 NA 8.00 4.55 NA 10.00 13.33 NA 3.70 6.67 10.00 10.71 10.53 6.67 11.11 10.71 15.79 8.16 9.09 6.67 7.69 5.56 5.56 4.65 11.54 4.76 13.64 K intron_retention B4,I_chr2L_13513474_13549131,I_chr2L_13547133_13549131,I_chr2L_13547162_13547692,I_chr2L_13547304_13549131 chr2L - chr2L_13547133_13549131 chr2L_13547132_13547133;chr2L_13549131_13549132 chr2L_13547062_13547132;chr2L_13549132_13549231 94.12 87.50 81.25 95.00 NA 91.67 94.74 100.00 95.65 100.00 100.00 87.50 88.89 100.00 92.31 100.00 91.67 100.00 92.86 93.75 91.67 100.00 91.67 85.71 100.00 88.89 92.31 94.44 93.75 94.44 94.12 100.00 92.00 94.74 100.00 100.00 92.86 NA 92.86 100.00 91.67 100.00 100.00 100.00 90.91 92.86 70.00 95.65 100.00 93.33 100.00 100.00 NA NA 93.33 81.82 92.86 100.00 K cassette ben chrX + chrX_13890557_13892127 chrX_13890557_13890648;chrX_13890768_13892127 chrX_13890649_13890767 chrX_13890387_13890556;chrX_13892128_13892800 1.23 0.00 1.69 2.19 0.00 0.00 2.21 0.00 1.42 0.00 0.00 1.23 1.25 0.79 0.67 0.75 0.00 0.83 1.48 1.46 2.22 0.00 0.78 0.90 0.00 1.71 1.12 1.56 1.34 1.37 0.69 1.90 2.22 1.55 2.20 1.12 1.82 0.00 1.12 2.45 1.41 0.83 2.04 0.00 1.26 1.22 2.20 1.48 0.85 0.00 1.75 1.15 2.38 1.06 0.00 1.75 1.32 1.64 K intron_retention CG17370,RI_chr3R_21707998_21709823,RI_chr3R_21707998_21710705,RI_chr3R_21714780_21715376 chr3R + chr3R_21707998_21711103 chr3R_21707997_21707998;chr3R_21711103_21711104 chr3R_21707898_21707997;chr3R_21711104_21711551 0.00 0.00 0.00 5.66 3.45 0.00 7.69 8.00 2.86 2.86 0.00 2.22 0.00 0.00 0.00 7.27 0.00 9.52 3.45 5.45 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.17 7.69 0.00 0.00 0.00 NA 0.00 2.17 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 K intron_retention RhoGAP71E,I_chr3L_15583097_15589765 chr3L + chr3L_15594396_15594734 chr3L_15594395_15594396;chr3L_15594734_15594735 chr3L_15594333_15594395;chr3L_15594735_15595615 12.70 12.70 7.55 21.54 8.06 7.27 18.18 20.73 16.16 7.25 13.21 12.60 24.24 20.93 16.67 12.28 13.04 10.34 14.89 16.50 14.00 38.71 11.54 10.67 19.57 13.04 18.99 32.00 9.43 7.69 15.00 9.09 11.11 14.14 16.00 15.38 11.22 8.33 7.41 17.50 19.44 12.50 18.92 10.14 8.11 8.70 5.56 11.21 12.00 5.56 13.51 13.51 5.26 13.33 13.70 11.76 10.53 6.85 K intron_retention trio,I_chr3L_999683_1009321 chr3L - chr3L_1003654_1003727 chr3L_1003653_1003654;chr3L_1003727_1003728 chr3L_1003396_1003653;chr3L_1003728_1003821 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.37 0.00 0.74 1.03 0.00 0.00 0.78 0.00 2.68 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.68 0.00 0.00 0.61 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.62 0.80 0.00 0.44 0.90 0.00 0.00 0.00 0.00 0.61 0.00 K jcn_only_AA mle chr2R - chr2R_1867143_1867547 chr2R_1867426_1867547 chr2R_1867548_1867556 6.90 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 23.81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.90 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor E_chr4_592469_594231,Ephrin,I_chr4_595055_597604,RI_chr4_596272_596341 chr4 + chr4_592737_594238;chr4_592646_594238;chr4_592490_594238;chr4_592593_594238;chr4_592469_594238;chr4_592798_594238 chr4_592410_594238 chr4_594239_594331;chr4_592404_592409 0.00 0.00 0.00 0.00 0.00 16.67 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 4.55 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 5.26 NA 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention CG12945,I_chr3R_5615604_5615859,I_chr3R_5615807_5615858,RI_chr3R_5616467_5616560 chr3R - chr3R_5615988_5616041 chr3R_5615987_5615988;chr3R_5616041_5616042 chr3R_5615860_5615987;chr3R_5616042_5616182 0.00 0.00 0.00 10.10 0.00 0.00 4.00 0.00 0.00 0.00 0.00 1.16 0.00 2.13 0.00 3.80 0.00 0.00 1.82 2.61 0.00 1.59 3.92 0.00 0.00 15.38 4.65 5.00 16.13 0.00 4.62 0.00 1.54 3.03 0.00 5.56 NA 0.00 0.00 0.00 3.28 5.26 2.70 0.00 0.00 4.35 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14425,Sxl,CG14425_Sxl,CEFI_chrX_6981717_6984166,CEF_chrX_6984538_6992033 chrX - chrX_6982783_6985706 chrX_6982782_6982783;chrX_6985706_6985707 chrX_6982611_6982782;chrX_6985707_6985745 39.05 NA NA 40.00 NA NA 33.33 46.67 38.10 NA NA 50.00 NA 54.55 NA 46.15 NA NA NA 17.65 NA NA NA NA NA NA NA NA NA NA 20.00 NA NA 36.84 NA NA NA NA NA 25.00 NA 25.00 NA NA NA NA NA 55.00 43.75 NA NA NA NA NA NA NA NA NA K intron_retention tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_561069_561129 chr3R_561068_561069;chr3R_561129_561130 chr3R_560887_561068;chr3R_561130_561279 0.00 0.00 0.72 1.63 2.50 0.00 1.83 2.05 0.33 0.00 0.00 0.45 0.00 0.76 0.00 0.00 0.90 1.43 0.00 1.09 0.00 0.00 0.00 1.35 0.00 0.00 1.59 2.67 2.53 0.00 0.00 2.27 0.00 0.44 1.94 0.00 0.00 0.00 0.00 0.00 2.86 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.85 0.00 1.16 1.06 0.91 1.31 0.81 K jcn_only_AD CG1718 chrX - chrX_21163958_21164368;chrX_21163958_21164390 chrX_21163958_21164182 chrX_21163741_21163957;chrX_21164391_21164557 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA 0.00 NA K jcn_only_AD exba,RI_chr3R_1425087_1425302,I_chr3R_1425087_1425925,I_chr3R_1425813_1426009,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1425087_1426209;chr3R_1425087_1425759;chr3R_1425087_1426009 chr3R_1425087_1426125 chr3R_1424987_1425086;chr3R_1426210_1426225 1.56 3.45 1.92 3.45 0.00 0.00 0.00 2.15 2.42 2.70 0.00 0.00 2.50 0.00 1.56 2.35 0.00 0.00 1.56 1.67 0.00 1.79 4.35 3.70 2.94 0.00 0.00 0.00 0.00 1.75 2.67 0.00 1.23 0.96 2.33 0.00 0.00 0.00 0.00 1.87 3.45 3.88 2.00 0.00 0.00 3.30 2.13 5.45 2.44 0.00 3.23 2.50 0.00 2.78 0.00 0.00 0.00 2.70 K alternative_donor Sep4,I_chrX_16588453_16588650,I_chrX_16588453_16588983 chrX - chrX_16588405_16588650;chrX_16588405_16588983 chrX_16588405_16589150 chrX_16588353_16588404;chrX_16589151_16589177 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG2065 chr2R + chr2R_3551440_3551537 chr2R_3551439_3551440;chr2R_3551537_3551538 chr2R_3551288_3551439;chr2R_3551538_3551801 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 4.65 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2388671_2392054 chrX_2388671_2389073;chrX_2389272_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2392054 chrX_2389074_2389271;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2388641_2388670;chrX_2392055_2392148 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Moca-cyp chr3R + chr3R_24167182_24167348 chr3R_24167181_24167182;chr3R_24167348_24167349 chr3R_24167094_24167181;chr3R_24167349_24167903 57.14 60.87 68.42 80.95 80.00 65.00 68.42 73.33 68.97 45.45 70.00 62.50 62.50 61.11 62.96 62.50 69.23 57.14 75.00 71.88 54.55 62.50 50.00 60.87 38.89 NA 44.12 52.63 36.36 70.00 19.35 50.00 50.00 82.14 39.13 33.33 34.48 52.63 44.12 53.49 38.46 72.73 76.92 47.83 43.48 43.33 57.14 55.81 70.97 40.00 48.57 52.63 62.50 40.91 77.78 44.44 63.16 50.00 K intron_retention CG1703,Met chrX + chrX_11506138_11506208 chrX_11506137_11506138;chrX_11506208_11506209 chrX_11505974_11506137;chrX_11506209_11507297 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.21 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 1.58 0.00 0.00 0.00 0.81 0.00 0.00 0.00 1.90 4.04 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 1.37 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG6923 chr3R - chr3R_7574682_7575419 chr3R_7574682_7574963 chr3R_7574512_7574681;chr3R_7575420_7575455 100.00 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 NA 100.00 90.00 100.00 85.71 100.00 91.67 83.33 100.00 100.00 88.89 100.00 NA 100.00 100.00 75.00 83.33 100.00 100.00 100.00 100.00 100.00 NA NA 81.82 100.00 100.00 100.00 100.00 83.33 85.71 NA 90.91 100.00 100.00 NA 75.00 NA 100.00 90.91 80.00 85.71 100.00 NA NA 100.00 100.00 100.00 NA K intron_retention cni,RI_chr2L_16309575_16309999,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16310641_16310690 chr2L_16310640_16310641;chr2L_16310690_16310691 chr2L_16310441_16310640;chr2L_16310691_16310700 87.50 86.36 75.86 86.08 90.32 87.88 92.00 86.30 88.46 90.91 88.46 85.48 82.14 82.86 82.22 86.21 87.88 87.50 84.62 86.05 83.33 83.33 88.89 85.19 83.33 97.73 90.00 87.50 100.00 NA 91.43 91.67 100.00 86.96 88.89 NA 80.95 95.45 82.14 96.15 93.33 76.67 87.50 91.67 100.00 93.33 83.33 94.12 87.84 66.67 73.08 84.00 NA NA 83.33 87.88 81.25 83.33 K intron_retention Vps13,I_chr2R_3464510_3464571 chr2R + chr2R_3463431_3463491 chr2R_3463430_3463431;chr2R_3463491_3463492 chr2R_3462870_3463430;chr2R_3463492_3463650 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.41 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 5.88 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K alternative_acceptor CG1265,I_chr3L_4255296_4255550 chr3L + chr3L_4255296_4255353;chr3L_4255296_4255609;chr3L_4255296_4255457 chr3L_4255296_4255550 chr3L_4255196_4255295;chr3L_4255610_4255650 3.12 1.69 3.33 4.35 2.56 2.22 5.56 2.60 3.92 6.06 2.70 2.35 12.12 2.70 6.82 5.63 2.38 3.92 4.35 3.01 2.27 3.39 3.12 1.30 0.00 7.32 3.03 0.00 6.90 2.70 5.88 0.00 8.00 4.00 8.33 0.00 3.90 3.39 2.60 2.86 3.03 1.98 0.00 2.82 3.70 2.60 3.33 5.71 4.88 3.33 3.23 3.92 0.00 0.00 4.92 0.00 4.71 2.13 K jcn_only_AD Amun,I_chrX_11607839_11608272,I_chrX_11607842_11608105,I_chrX_11607842_11608125,RI_chrX_11607842_11608272 chrX - chrX_11607839_11608590 chrX_11607839_11608507 chrX_11607788_11607838;chrX_11608591_11608810 47.62 NA 47.62 NA NA NA NA NA 51.06 NA NA 37.50 NA NA 42.86 NA NA NA NA 40.74 NA 27.27 70.00 NA NA 47.62 NA NA 61.90 30.30 NA 24.00 21.31 60.87 NA 47.62 66.67 NA NA 25.00 53.33 66.67 NA NA 47.62 50.00 NA 24.07 62.50 NA NA NA NA NA NA NA NA 14.86 K intron_retention CG9186 chr3L - chr3L_1312661_1312719 chr3L_1312660_1312661;chr3L_1312719_1312720 chr3L_1311719_1312660;chr3L_1312720_1313121 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CaMKII,I_chr4_1059085_1065781,RI_chr4_1061742_1064093,RI_chr4_1061742_1065781,I_chr4_1061989_1065781,RI_chr4_1063745_1065781,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,RI_chr4_1071489_1071968,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1064151_1065781 chr4_1064150_1064151;chr4_1065781_1065782 chr4_1064098_1064150;chr4_1065782_1065874 0.00 0.00 0.00 0.00 NA 0.00 11.11 0.00 0.00 NA NA 0.00 NA 0.00 NA 7.32 0.00 NA 0.00 0.00 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA 5.26 NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 5.26 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 K jcn_only_AD nuf,RI_chr3L_14222180_14223121,RI_chr3L_14209985_14223275,I_chr3L_14222054_14222918,I_chr3L_14224426_14225035 chr3L + chr3L_14206304_14223275;chr3L_14223207_14223275 chr3L_14219504_14223275 chr3L_14223276_14223369 90.00 97.22 NA NA NA NA NA 92.31 92.31 86.36 NA 84.00 NA NA 90.48 NA NA NA NA 90.91 NA 86.67 88.68 86.36 80.95 NA 92.11 78.26 93.02 100.00 84.00 NA 80.00 NA NA NA 85.71 91.43 92.31 74.42 95.83 96.77 NA 92.50 NA 90.62 90.91 90.00 77.78 76.74 90.32 90.62 75.00 76.19 NA 88.89 90.00 76.19 K intron_retention Snx6,RI_chr2L_8218680_8218853,I_chr2L_8230332_8238998 chr2L - chr2L_8220435_8220622 chr2L_8220434_8220435;chr2L_8220622_8220623 chr2L_8220045_8220434;chr2L_8220623_8220737 0.57 1.14 0.00 0.00 0.00 1.48 0.42 0.48 0.56 0.00 1.54 0.83 0.00 1.65 0.00 0.00 0.00 0.91 0.00 1.28 0.93 0.57 0.47 1.23 1.79 0.00 0.50 0.74 0.67 1.29 1.77 0.00 1.18 1.02 1.43 0.00 1.18 0.00 0.60 1.77 1.11 0.74 1.87 0.57 0.00 3.01 0.00 1.94 0.82 0.00 1.88 0.00 0.00 0.00 0.00 1.26 0.00 0.00 K alternative_acceptor Ect4,C_chr3L_8091754_8101552,I_chr3L_8091826_8092243,I_chr3L_8098397_8101385,I_chr3L_8098758_8101738,I_chr3L_8100030_8101385 chr3L + chr3L_8100050_8101738 chr3L_8100050_8101385 chr3L_8099116_8100049;chr3L_8101739_8101745 90.45 88.89 90.00 NA 83.33 85.71 80.00 92.31 93.75 91.67 NA 100.00 NA 100.00 100.00 71.43 87.50 80.00 88.89 86.96 100.00 100.00 89.47 87.50 100.00 100.00 88.89 87.50 84.00 80.00 80.00 100.00 85.00 92.31 92.31 73.33 100.00 100.00 100.00 94.12 100.00 93.33 100.00 92.86 75.00 95.83 90.91 90.00 100.00 88.89 94.12 85.71 90.91 91.67 90.00 89.47 85.71 70.00 K cassette Nedd4,I_chr3L_17535485_17536604,I_chr3L_17536186_17536604,I_chr3L_17536713_17536777,I_chr3L_17536813_17536863 chr3L + chr3L_17534504_17536863 chr3L_17534504_17536604;chr3L_17536713_17536863 chr3L_17536605_17536712 chr3L_17534419_17534503;chr3L_17536864_17536877 99.56 98.92 98.97 94.55 98.80 98.78 92.24 99.34 100.00 98.92 100.00 100.00 100.00 98.77 98.88 100.00 100.00 98.72 97.56 99.56 98.63 100.00 100.00 99.14 98.88 100.00 99.31 100.00 99.12 99.08 100.00 100.00 100.00 99.32 100.00 100.00 99.47 100.00 98.34 100.00 98.53 99.54 100.00 100.00 100.00 100.00 98.80 100.00 98.99 100.00 100.00 98.95 100.00 98.46 100.00 100.00 100.00 98.84 K intron_retention sec23,I_chr3R_1474873_1475080,I_chr3R_1477727_1478102 chr3R + chr3R_1477525_1477702 chr3R_1477524_1477525;chr3R_1477702_1477703 chr3R_1476976_1477524;chr3R_1477703_1477723 35.29 NA NA 75.00 NA NA NA 46.15 34.78 NA NA 21.05 30.77 60.00 37.50 NA NA 26.67 NA 26.47 NA 33.33 47.06 26.32 NA NA 46.15 47.06 54.55 36.36 NA 14.29 28.57 40.00 NA NA 38.89 NA 31.58 NA 25.00 41.67 NA NA 12.00 26.67 46.67 45.45 42.86 16.13 42.11 NA NA 35.00 NA 35.29 26.09 NA K alternative_acceptor CG3967,RI_chr3L_9408567_9410728,RI_chr3L_9412100_9412179 chr3L - chr3L_9407866_9408507 chr3L_9408397_9408507 chr3L_9408508_9408566;chr3L_9407481_9407865 100.00 100.00 100.00 95.24 85.71 100.00 93.33 94.44 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 85.71 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 88.89 75.00 100.00 94.74 85.71 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 90.00 100.00 100.00 100.00 88.89 94.12 90.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 K intron_retention CG8298 chr2R + chr2R_7877016_7877071 chr2R_7877015_7877016;chr2R_7877071_7877072 chr2R_7876887_7877015;chr2R_7877072_7878437 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA N intron_retention spir,I_chr2L_20334199_20334626,I_chr2L_20336550_20339058 chr2L + chr2L_20334731_20339244 chr2L_20334730_20334731;chr2L_20339244_20339245 chr2L_20334627_20334730;chr2L_20339245_20339375 65.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 42.86 NA NA NA NA NA 100.00 65.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor frtz chr2L - chr2L_1712543_1712611 chr2L_1712543_1712596 chr2L_1712145_1712542;chr2L_1712612_1713108 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA 87.50 NA NA 100.00 NA NA NA NA 100.00 NA 100.00 90.91 100.00 NA NA 100.00 NA 100.00 100.00 NA 85.71 NA 100.00 100.00 100.00 100.00 100.00 100.00 93.33 NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 92.86 90.91 100.00 100.00 100.00 NA NA 100.00 NA K intron_retention Spc105R chr3L + chr3L_20799475_20799533 chr3L_20799474_20799475;chr3L_20799533_20799534 chr3L_20799025_20799474;chr3L_20799534_20799958 0.00 NA 0.00 4.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 3.03 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG33558,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,EI_chr2R_2820947_2821570,CREI_chr2R_2832933_2850384 chr2R - chr2R_2817876_2818978;chr2R_2817876_2818567 chr2R_2817876_2819347 chr2R_2817851_2817875;chr2R_2819348_2819447 21.13 45.00 NA 45.45 NA NA NA NA 12.50 NA NA 26.83 NA NA NA NA NA NA NA 25.00 NA NA 23.19 36.17 20.00 NA NA NA 25.00 NA NA 20.83 7.89 27.27 NA 5.00 22.73 26.09 24.32 19.15 4.35 32.35 NA 9.09 11.11 4.44 26.67 3.03 NA 31.25 21.43 17.39 13.04 29.63 NA 17.14 11.11 9.09 K alternative_acceptor ced-6,I_chr2R_5322831_5322898,I_chr2R_5324717_5324924,I_chr2R_5328640_5328696 chr2R - chr2R_5322831_5322898 chr2R_5322840_5322898 chr2R_5322899_5322998;chr2R_5322765_5322830 98.96 97.44 98.05 97.37 98.11 98.10 98.76 98.33 99.06 98.11 98.13 99.39 97.85 100.00 99.54 98.87 98.75 99.40 99.54 99.68 100.00 98.08 99.08 99.51 96.72 99.56 98.09 96.47 98.23 99.04 98.27 99.03 98.80 96.81 99.35 99.33 99.04 98.69 98.92 99.33 99.30 99.45 99.36 99.22 100.00 99.49 99.51 98.54 99.18 99.52 98.70 99.11 98.18 98.75 98.47 99.50 98.96 98.55 K intron_retention CG31812 chr2L + chr2L_16730217_16730270 chr2L_16730216_16730217;chr2L_16730270_16730271 chr2L_16729780_16730216;chr2L_16730271_16730855 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA Prat chr3R - chr3R_3737336_3737415 chr3R_3737339_3737415 chr3R_3737416_3737540;chr3R_3735310_3737335 80.70 79.31 84.93 80.49 75.71 78.21 88.31 77.78 82.32 80.00 80.00 77.04 79.07 78.18 85.87 81.11 79.25 81.16 80.00 77.63 88.57 87.21 80.70 78.90 76.74 79.55 86.44 94.29 78.02 88.89 79.03 89.06 83.33 87.38 74.29 86.21 77.69 81.19 85.12 74.59 73.58 78.12 81.25 80.00 81.55 86.76 85.92 73.20 84.96 75.41 80.52 90.14 83.17 82.46 85.44 83.70 80.53 81.10 K intron_retention E(z) chr3L - chr3L_10628148_10628215 chr3L_10628147_10628148;chr3L_10628215_10628216 chr3L_10627675_10628147;chr3L_10628216_10628785 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.02 3.08 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention br,I_chrX_1517022_1518170 chrX + chrX_1530054_1530128 chrX_1530053_1530054;chrX_1530128_1530129 chrX_1529865_1530053;chrX_1530129_1530582 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.77 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 2.86 2.38 0.00 6.67 1.33 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG17471,RI_chr4_1213397_1214333,RI_chr4_1213397_1216053,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1213275_1213331;chr4_1213279_1213331 chr4_1213289_1213331 chr4_1213332_1213341;chr4_1213122_1213274 0.00 0.00 0.00 7.69 NA 0.00 5.26 5.41 2.38 NA NA 6.67 0.00 0.00 0.00 4.26 0.00 0.00 0.00 0.00 NA NA 7.69 0.00 9.09 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 2.94 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 4.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 K alternative_acceptor rhea,I_chr3L_8563622_8564067 chr3L + chr3L_8549072_8554458 chr3L_8549072_8554434 chr3L_8548854_8549071;chr3L_8554459_8554717 0.00 0.00 0.00 1.02 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K alternative_last_exon cryptocephal,noncoding_4181,I_chr2L_21312209_21314626 chr2L + chr2L_21311033_21311913,chr2L_21311033_21311752 chr2L_21311033_21311192 chr2L_21311914_21312043 chr2L_21311193_21311487 chr2L_21310948_21311032 5.23 7.54 5.63 1.20 4.44 5.53 2.76 2.85 4.67 4.44 4.63 3.66 3.37 4.09 4.09 11.76 4.44 7.73 3.46 5.07 4.94 3.89 4.26 7.83 4.04 1.68 3.80 7.61 13.04 7.63 5.23 13.22 4.62 2.93 6.43 12.66 6.13 8.43 7.27 11.66 3.12 4.02 4.92 5.43 11.19 8.43 11.63 5.84 3.52 7.99 7.53 6.78 9.45 11.73 3.94 10.53 5.90 3.81 K alternative_acceptor CG6569,RI_chr3R_17693077_17693126,I_chr3R_17694702_17694760 chr3R - chr3R_17692987_17693126 chr3R_17693049_17693126 chr3R_17693127_17693226;chr3R_17692977_17692986 1.00 0.00 NA NA NA NA 13.79 0.00 6.25 NA NA NA NA NA NA 5.88 NA 0.00 0.00 0.00 NA 7.41 6.67 0.00 NA NA NA 6.45 NA NA 2.00 NA NA NA NA NA 0.00 NA 6.25 NA NA 4.17 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA K intron_retention T-cp1 chr3R - chr3R_18315581_18315643 chr3R_18315580_18315581;chr3R_18315643_18315644 chr3R_18315186_18315580;chr3R_18315644_18316534 0.00 0.00 0.00 0.18 0.36 0.00 0.00 0.19 0.32 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.21 0.00 0.00 1.04 1.33 0.32 0.00 0.00 0.00 0.00 0.60 0.00 0.25 0.00 0.00 0.26 0.00 0.00 0.29 0.00 0.00 0.36 0.17 0.00 0.00 0.17 0.67 0.36 0.00 0.26 0.00 0.25 0.20 0.00 0.00 K intron_retention CG12054 chr3R + chr3R_27051799_27051862 chr3R_27051798_27051799;chr3R_27051862_27051863 chr3R_27051535_27051798;chr3R_27051863_27051971 0.00 1.89 0.00 0.00 0.00 0.00 0.00 1.54 1.74 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 6.45 0.85 0.00 6.56 1.08 0.00 3.12 0.00 4.17 4.05 35.00 0.00 0.00 3.12 0.00 1.18 0.00 0.00 0.00 1.33 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Arc-p34 chr2L + chr2L_20422237_20422301 chr2L_20422237_20422298 chr2L_20422145_20422236;chr2L_20422302_20422411 0.23 0.29 0.23 0.30 0.00 0.00 0.41 0.27 0.15 0.33 0.45 0.00 0.00 0.26 0.00 0.44 0.00 0.35 0.47 0.17 0.38 0.00 0.00 0.89 0.00 0.00 0.41 0.00 1.02 0.00 0.17 0.20 0.38 0.52 0.00 0.22 0.23 0.00 0.23 0.31 0.00 0.00 0.69 0.24 0.33 0.56 0.19 0.13 0.61 0.25 0.20 0.60 0.00 0.20 0.59 0.39 0.27 0.29 K intron_retention CG17746,I_chr3L_3238983_3250343 chr3L - chr3L_3237665_3237741 chr3L_3237664_3237665;chr3L_3237741_3237742 chr3L_3236805_3237664;chr3L_3237742_3238072 1.61 0.00 2.00 1.83 0.00 0.00 1.89 0.81 1.26 0.00 2.90 1.52 0.00 2.99 2.94 4.08 0.00 0.00 2.11 2.30 0.00 3.92 0.00 2.30 2.70 0.00 6.80 12.50 4.00 2.22 0.00 0.00 0.00 2.19 3.45 0.00 1.89 0.00 1.92 4.10 0.00 0.70 0.00 2.50 1.68 2.46 0.00 1.61 3.25 4.76 1.08 3.57 0.00 0.00 0.00 0.00 2.56 0.64 K intron_retention CG7546 chr3L + chr3L_7509151_7509215 chr3L_7509150_7509151;chr3L_7509215_7509216 chr3L_7508971_7509150;chr3L_7509216_7509646 0.00 1.03 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 1.64 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention ns3,CG32808 chrX - chrX_1356346_1356405 chrX_1356345_1356346;chrX_1356405_1356406 chrX_1356002_1356345;chrX_1356406_1356489 1.49 2.04 4.17 5.26 0.00 0.00 3.77 0.00 2.78 1.82 0.00 4.24 0.00 6.06 0.00 0.00 0.00 4.35 2.70 1.89 0.00 2.74 5.41 2.44 4.17 0.00 4.35 4.88 25.76 1.41 3.85 0.00 0.00 1.49 0.00 1.27 4.35 2.38 0.97 0.00 3.61 2.56 0.00 0.00 0.00 2.44 2.50 1.96 3.66 0.88 1.35 0.00 0.00 1.30 1.54 1.41 0.00 1.24 K intron_retention SNF1A chrX + chrX_1269789_1269894 chrX_1269788_1269789;chrX_1269894_1269895 chrX_1269580_1269788;chrX_1269895_1270220 21.74 32.14 15.79 48.00 17.14 20.00 31.25 16.36 16.90 25.00 16.13 17.57 20.00 9.09 19.23 21.74 15.38 13.33 11.76 27.94 15.38 32.43 30.56 27.03 42.31 37.50 43.33 63.64 43.48 16.33 13.95 22.58 33.33 20.34 39.13 16.00 43.14 27.78 21.43 30.51 42.86 21.69 17.39 21.88 21.43 23.68 20.69 29.51 15.62 17.39 27.27 12.50 15.38 20.69 23.26 21.88 24.14 30.23 K alternative_donor Cep97 chr2L + chr2L_3870555_3870621 chr2L_3870559_3870621 chr2L_3870622_3871425;chr2L_3870127_3870554 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG14939,RI_chr2L_11812683_11813150 chr2L - chr2L_11812683_11813633;chr2L_11812683_11813150 chr2L_11812683_11813724 chr2L_11812583_11812682;chr2L_11813725_11813792 94.12 91.30 93.48 95.83 100.00 93.33 94.12 94.83 96.49 100.00 96.08 95.95 100.00 96.00 97.62 97.96 93.94 97.22 95.45 95.51 98.00 86.67 88.89 83.33 70.00 97.14 92.31 72.73 87.50 90.00 97.73 90.00 86.96 94.94 NA 80.00 93.33 87.50 88.89 93.33 87.50 96.15 97.22 91.67 96.67 87.50 81.82 90.91 97.22 81.82 83.33 94.44 NA NA 95.24 NA 100.00 94.74 K intron_retention lok,RI_chr2L_20063248_20063377 chr2L + chr2L_20061721_20061781 chr2L_20061720_20061721;chr2L_20061781_20061782 chr2L_20061530_20061720;chr2L_20061782_20062012 26.67 21.21 38.89 48.98 26.09 23.08 41.07 19.67 26.67 25.00 36.84 25.45 28.21 33.33 31.03 17.31 17.24 25.00 20.51 30.77 40.00 35.29 31.11 25.81 47.83 45.45 35.00 40.00 44.44 21.74 22.22 25.00 36.36 29.31 30.43 50.00 15.15 24.00 35.29 28.26 60.00 23.81 30.00 26.47 25.00 19.23 21.43 26.67 25.81 24.14 34.88 25.93 NA 40.00 18.00 20.00 40.00 21.05 K intron_retention Tob,RI_chrX_15977009_15983293 chrX - chrX_15974991_15975074 chrX_15974990_15974991;chrX_15975074_15975075 chrX_15974837_15974990;chrX_15975075_15975315 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 88.89 NA NA 100.00 100.00 NA NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 NA NA 100.00 NA 100.00 NA 100.00 90.91 NA NA 100.00 NA NA NA K alternative_donor eIF2B-delta chr2R + chr2R_19274141_19274529 chr2R_19274146_19274529 chr2R_19274530_19274619;chr2R_19274016_19274140 94.44 92.31 100.00 95.45 NA 100.00 96.88 96.15 97.37 NA 90.00 97.44 100.00 93.33 92.86 100.00 100.00 91.67 88.89 92.31 88.89 90.48 86.36 93.75 100.00 92.31 94.44 88.24 92.86 66.67 100.00 63.64 NA 95.83 90.00 91.67 90.91 100.00 94.44 76.47 NA 96.15 100.00 100.00 NA 88.24 96.00 90.91 100.00 94.44 100.00 100.00 100.00 100.00 93.33 100.00 100.00 94.12 K alternative_donor CG10277,I_chr3R_2208983_2210253,I_chr3R_2211939_2212057 chr3R + chr3R_2209240_2210702;chr3R_2209244_2210702 chr3R_2208983_2210702 chr3R_2210703_2210980;chr3R_2208883_2208982 95.58 86.67 97.33 95.33 95.00 98.44 94.57 96.45 95.58 98.82 95.31 94.48 95.52 94.29 94.74 97.54 93.48 92.31 96.15 95.95 95.38 94.30 95.93 96.26 95.16 93.98 96.12 92.65 88.97 98.26 94.90 100.00 96.82 94.06 96.00 95.80 97.40 71.43 98.03 96.49 98.26 95.21 95.00 94.95 94.68 97.01 97.01 96.95 94.49 98.04 95.14 95.35 97.10 100.00 94.87 100.00 100.00 99.00 K intron_retention CG31278,noncoding_15893,RI_chr3R_6533509_6533568 chr3R - chr3R_6533509_6533579 chr3R_6533508_6533509;chr3R_6533579_6533580 chr3R_6533409_6533508;chr3R_6533580_6533668 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA 14.29 NA NA NA 4.17 NA 0.00 0.00 NA NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 8.57 K alternative_acceptor PR2,I_chr2R_9032197_9036175 chr2R - chr2R_9032194_9036175 chr2R_9035960_9036175 chr2R_9036176_9036275;chr2R_9032097_9032193 19.23 16.00 18.18 45.00 17.14 15.56 35.29 22.22 18.75 24.14 15.38 21.43 17.50 15.56 20.00 33.33 21.62 15.15 20.00 34.95 16.22 15.56 27.12 29.55 30.00 19.23 28.26 44.12 22.22 22.50 17.95 16.67 35.48 21.74 16.67 28.26 23.08 32.00 18.18 18.18 26.32 17.58 22.22 15.56 26.19 16.98 13.95 17.33 19.05 27.50 17.54 26.92 14.00 14.29 17.39 20.69 17.39 14.49 K intron_retention I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,cg,I_chr2R_10064197_10068715,I_chr2R_10067437_10068984,I_chr2R_10068194_10068715 chr2R + chr2R_10067437_10068715 chr2R_10067436_10067437;chr2R_10068715_10068716 chr2R_10067337_10067436;chr2R_10068716_10068805 16.18 12.79 15.87 18.57 16.07 18.18 38.10 19.28 10.62 5.97 28.57 24.71 27.27 27.27 16.67 18.18 10.91 20.59 19.15 14.02 16.67 6.36 12.81 12.25 25.00 15.56 21.43 18.42 35.14 10.71 20.69 25.00 14.56 15.79 14.08 17.86 10.81 8.13 14.69 18.31 45.95 14.05 20.51 18.45 10.29 23.33 14.56 16.18 14.00 22.22 16.18 16.46 9.30 16.67 15.69 15.74 13.51 13.58 K intron_retention jog,I_chrX_19730788_19739571 chrX - chrX_19730788_19744895 chrX_19730787_19730788;chrX_19744895_19744896 chrX_19730688_19730787;chrX_19744896_19745186 0.00 1.45 1.18 3.30 0.00 0.00 2.86 1.20 1.80 0.00 0.00 3.97 4.17 3.85 1.19 1.27 0.00 0.00 0.00 1.04 0.00 0.00 0.63 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.87 0.00 0.00 0.38 0.00 0.00 1.16 0.00 1.97 4.08 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Rpn5 chr3R + chr3R_1615433_1615491;chr3R_1615437_1615491 chr3R_1615416_1615491 chr3R_1615492_1616546;chr3R_1615400_1615415 0.00 1.14 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.69 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 1.64 0.00 0.92 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 3.70 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention E_chr4_592469_594231,Ephrin,I_chr4_595055_597604,RI_chr4_596272_596341 chr4 + chr4_592490_594238 chr4_592489_592490;chr4_594238_594239 chr4_592471_592489;chr4_594239_594331 48.81 NA NA 47.62 NA NA 53.33 52.38 50.00 NA NA 44.44 29.41 NA NA 42.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 58.82 NA NA NA NA NA NA NA 56.25 NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG15609,I_chr2R_12898038_12898391,C_chr2R_12899322_12900789,I_chr2R_12902708_12903184 chr2R - chr2R_12898038_12898391 chr2R_12898041_12898391 chr2R_12898392_12898481;chr2R_12897938_12898037 99.21 100.00 100.00 100.00 100.00 98.68 98.67 96.97 97.73 98.11 97.73 99.21 98.28 98.04 100.00 100.00 98.39 98.31 100.00 99.25 100.00 100.00 98.70 98.78 100.00 98.04 98.72 96.55 100.00 100.00 97.40 100.00 100.00 99.13 97.06 100.00 97.37 100.00 99.03 98.90 95.35 99.23 97.96 100.00 97.73 97.10 100.00 100.00 98.89 100.00 100.00 100.00 100.00 94.74 100.00 100.00 96.67 100.00 K intron_retention CG1418 chr2R - chr2R_5851827_5851879 chr2R_5851826_5851827;chr2R_5851879_5851880 chr2R_5851342_5851826;chr2R_5851880_5852086 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 1.89 0.00 1.72 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 1.69 0.00 2.52 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 2.78 0.00 0.00 0.00 0.00 0.00 0.78 0.00 K alternative_last_exon Haspin chr2RHet + chr2RHet_3215563_3252681 chr2RHet_3215563_3234342 chr2RHet_3252682_3252944 chr2RHet_3234343_3234814 chr2RHet_3215287_3215562 100.00 100.00 100.00 100.00 NA 100.00 94.44 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG31431 chr3R + chr3R_17696702_17697703 chr3R_17696701_17696702;chr3R_17697703_17697704 chr3R_17696406_17696701;chr3R_17697704_17697862 94.12 93.75 95.00 96.77 100.00 94.44 93.55 97.30 93.75 NA 78.57 96.67 95.24 86.67 85.19 100.00 92.31 93.33 94.12 97.87 92.31 NA 95.83 100.00 93.75 95.83 87.10 100.00 88.89 100.00 93.75 87.50 93.75 88.00 100.00 100.00 92.86 NA 100.00 90.48 94.12 93.62 94.12 100.00 NA 86.96 94.44 90.91 97.22 88.24 96.88 100.00 90.91 100.00 100.00 NA 93.75 91.67 K alternative_donor loco,I_chr3R_18448629_18449211,I_chr3R_18456329_18462522 chr3R - chr3R_18456329_18462522 chr3R_18456329_18461366 chr3R_18456229_18456328;chr3R_18462523_18462622 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 75.00 80.00 100.00 100.00 100.00 100.00 75.00 75.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 K jcn_only_AA CG31678,I_chr2L_20661149_20674994,I_chr2L_20664450_20667865,RI_chr2L_20671102_20674994 chr2L - chr2L_20661149_20674994 chr2L_20664210_20674994 chr2L_20674995_20675094 100.00 100.00 100.00 100.00 100.00 100.00 98.82 100.00 99.30 97.06 95.74 100.00 100.00 100.00 98.75 100.00 100.00 100.00 100.00 100.00 96.43 98.63 100.00 98.61 96.08 100.00 98.59 98.44 97.37 98.97 98.72 100.00 98.12 99.15 100.00 98.73 95.00 100.00 100.00 97.12 98.85 100.00 100.00 98.78 100.00 100.00 100.00 96.85 100.00 100.00 98.95 100.00 100.00 100.00 98.81 100.00 100.00 99.21 K intron_retention mRpS9 chr3R - chr3R_3715161_3715230 chr3R_3715160_3715161;chr3R_3715230_3715231 chr3R_3714983_3715160;chr3R_3715231_3715393 4.94 2.04 4.11 8.05 5.71 2.47 2.99 6.67 6.90 8.00 8.89 4.76 5.13 3.85 5.13 5.56 5.71 5.00 4.00 4.19 1.56 8.33 5.88 2.54 5.48 2.44 4.94 5.26 0.88 5.75 7.23 5.88 7.41 6.25 5.63 6.67 7.06 6.25 4.51 4.27 2.44 5.69 0.00 4.88 2.34 3.37 3.52 1.64 3.45 7.87 3.42 4.44 2.36 4.03 6.41 5.17 4.02 1.64 K intron_retention CG31150,Hmt-1 chr3R - chr3R_11671610_11674153 chr3R_11671609_11671610;chr3R_11674153_11674154 chr3R_11671466_11671609;chr3R_11674154_11674158 0.35 1.13 1.02 1.19 0.00 1.10 1.68 0.00 0.41 0.00 0.00 0.82 0.00 0.00 0.44 1.17 0.00 0.00 0.85 0.94 0.00 0.00 0.61 0.34 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.39 0.62 0.64 0.00 0.33 0.95 0.00 0.49 0.69 0.97 0.00 0.00 0.75 0.70 0.00 2.41 1.13 0.64 0.00 0.00 0.35 0.00 0.41 0.96 0.00 0.34 K jcn_only_AD CG14767,RI_chr2R_4607538_4607606,CG30357,RI_chr2R_4610372_4610761 chr2R - chr2R_4607538_4610761 chr2R_4607538_4607606 chr2R_4607438_4607537;chr2R_4610762_4610861 0.40 0.16 0.69 0.15 0.00 0.23 1.98 0.17 1.02 2.49 1.64 0.23 0.84 0.85 0.40 0.18 0.95 0.56 0.28 0.62 0.00 0.64 0.10 0.25 1.02 1.08 0.70 0.29 0.00 0.91 0.64 0.72 0.00 0.83 0.48 0.18 0.30 0.30 0.21 0.24 0.83 0.60 1.06 0.27 1.55 0.38 0.31 0.77 0.27 0.56 0.91 0.43 0.18 0.19 0.22 0.64 0.14 0.00 K alternative_donor CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908142_9908424,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907784_9908424;chr2L_9907784_9908307;chr2L_9907784_9908405 chr2L_9907784_9908531 chr2L_9907756_9907783;chr2L_9908532_9908619 11.84 9.43 9.09 9.38 19.23 12.50 12.86 7.89 18.40 13.64 16.00 10.75 17.95 18.18 9.09 6.17 11.36 12.00 7.14 12.86 13.33 20.47 11.11 13.85 7.41 9.09 18.06 11.11 12.50 10.71 16.67 2.94 8.70 9.78 15.15 13.59 19.72 16.28 11.48 12.37 9.09 9.89 7.32 17.95 13.16 11.84 17.91 9.52 8.43 15.91 9.88 10.26 15.38 10.87 12.90 12.00 10.34 9.09 K jcn_only_AD CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20824725_20825271;chr2L_20824494_20825271;chr2L_20824631_20825271 chr2L_20824602_20825271 chr2L_20825272_20825366;chr2L_20824482_20824493 0.00 NA NA NA NA NA 0.00 0.00 0.00 NA 0.00 NA NA NA NA 0.00 NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA NA 0.00 0.00 2.27 NA NA NA NA NA NA 2.74 NA 0.00 NA NA 2.63 2.70 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K intron_retention RpL29,I_chr2R_17184688_17191389 chr2R + chr2R_17181380_17181555 chr2R_17181379_17181380;chr2R_17181555_17181556 chr2R_17181355_17181379;chr2R_17181556_17181666 35.83 NA NA 33.33 NA NA 19.05 6.67 19.35 NA 13.33 29.41 NA NA NA 37.50 25.00 NA 41.67 26.92 NA NA 50.00 NA NA NA 54.55 NA NA NA 35.29 NA NA 43.75 NA NA 19.23 NA NA 50.00 NA 40.00 NA NA NA 60.00 NA NA 53.33 NA NA NA NA NA 36.36 NA 25.00 75.86 K intron_retention babo chr2R + chr2R_4846840_4846904 chr2R_4846839_4846840;chr2R_4846904_4846905 chr2R_4846612_4846839;chr2R_4846905_4847138 0.00 0.00 2.33 0.00 0.00 0.00 5.77 2.27 2.90 0.00 0.00 2.70 4.35 0.00 5.56 0.00 0.00 0.00 4.17 2.92 0.00 0.00 0.00 4.55 6.25 4.35 12.96 NA 8.70 0.00 3.70 0.00 0.00 2.13 0.00 0.00 3.57 0.00 3.12 3.23 7.69 1.82 0.00 2.04 0.00 0.00 0.00 9.09 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention psq,RI_chr2R_6449696_6467831 chr2R + chr2R_6501632_6502037 chr2R_6501631_6501632;chr2R_6502037_6502038 chr2R_6501448_6501631;chr2R_6502038_6503753 1.59 1.67 2.82 2.35 0.00 3.33 0.00 2.41 0.00 0.00 0.00 2.53 3.12 1.39 1.09 1.59 1.64 1.39 0.00 2.73 0.00 1.12 2.82 1.57 2.35 5.41 2.17 4.17 1.04 0.00 1.69 3.92 2.56 3.42 0.00 1.67 0.76 1.33 0.00 1.62 4.44 1.10 0.00 0.00 0.00 2.70 1.22 1.80 3.17 0.00 2.10 2.41 1.79 0.00 0.00 1.23 0.00 2.60 N jcn_only_AA C3G chrX - chrX_6676710_6676802 chrX_6676726_6676802 chrX_6676803_6676928;chrX_6676644_6676709 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG1553 chr2R - chr2R_3692444_3692926 chr2R_3692444_3692605 chr2R_3691017_3692443;chr2R_3692927_3693071 17.43 NA NA 13.33 NA NA 25.00 10.00 25.00 NA NA 16.67 NA NA NA 23.08 NA NA 15.38 16.67 NA NA NA NA NA NA 37.50 66.67 18.18 NA NA NA NA 10.53 NA NA NA NA NA 20.00 NA 20.00 NA NA NA NA NA 0.00 10.53 NA NA NA NA NA NA NA NA NA K alternative_donor CG14442,I_chrX_6586147_6586435 chrX - chrX_6586898_6587143 chrX_6586898_6587125 chrX_6586436_6586897;chrX_6587144_6589034 67.86 57.14 83.33 92.59 57.14 75.00 80.00 66.67 70.27 65.00 72.00 70.97 91.67 86.36 67.86 82.61 66.67 60.00 78.57 74.47 76.47 60.00 68.42 58.82 88.89 88.00 66.67 60.00 70.97 50.00 93.10 60.00 57.75 78.12 58.82 81.82 66.67 54.17 64.00 59.26 75.86 60.00 70.59 75.00 41.30 69.05 56.25 52.50 72.34 62.50 46.67 75.00 53.33 60.00 74.19 53.33 69.23 64.71 K alternative_acceptor RI_chr2L_8218680_8218853,Pvr,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8221968_8222225 chr2L_8222115_8222225 chr2L_8222226_8222376;chr2L_8221488_8221967 89.17 86.06 89.17 91.33 92.59 94.26 94.44 96.82 91.30 83.76 91.04 91.87 94.21 93.08 92.26 91.41 90.91 93.02 94.57 87.47 90.44 86.60 75.74 84.31 84.29 92.50 81.86 82.09 89.53 85.47 87.77 89.57 89.47 96.55 91.85 93.48 81.67 85.33 88.16 90.04 88.14 91.88 92.17 86.03 85.87 87.70 86.08 90.65 88.85 81.68 87.28 88.68 85.63 84.44 93.96 82.35 83.67 87.72 K intron_retention scrib,I_chr3R_22362324_22363015,I_chr3R_22381374_22399575,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22362324_22363092 chr3R_22362323_22362324;chr3R_22363092_22363093 chr3R_22362316_22362323;chr3R_22363093_22363115 6.00 0.00 NA 20.00 NA NA NA 12.50 7.14 0.00 NA 10.53 12.50 NA NA 12.50 NA NA 0.00 0.00 NA 41.18 6.45 8.70 0.00 NA 9.52 8.00 13.79 3.85 NA NA 0.00 10.53 0.00 0.00 0.00 0.00 0.00 8.51 7.14 8.00 NA 11.54 NA 0.00 NA 4.17 9.09 NA 0.00 0.00 NA NA 5.56 NA NA 0.00 K alternative_acceptor Gprk1,R_chr2R_238724_265876,RI_chr2R_357455_358274 chr2R - chr2R_210444_223881 chr2R_210463_223881 chr2R_223882_223902;chr2R_210281_210443 0.00 NA NA NA NA NA 0.00 4.35 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 0.00 0.00 NA NA 0.00 NA 3.03 NA 0.00 NA NA NA NA 0.00 NA 0.00 K alternative_last_exon br,I_chrX_1517022_1518170,chrX_1531825_1532171.0,chrX_1532359_1533289.0,chrX_1533577_1534629.0,chrX_1535554_1536485.0 chrX + chrX_1531368_1548424;chrX_1531368_1552820;chrX_1531368_1541397 chrX_1531368_1537100,chrX_1531368_1536917 chrX_1548425_1550023;chrX_1552821_1559444;chrX_1541398_1544171 chrX_1537101_1539195 chrX_1531317_1531367 23.00 21.82 17.02 33.00 19.05 17.07 22.22 17.07 16.42 33.33 15.22 19.44 21.62 18.00 17.31 14.93 28.12 13.89 17.78 27.93 16.28 32.81 24.53 25.64 26.83 17.95 21.31 36.17 32.08 18.81 19.23 32.43 25.56 16.13 23.44 30.19 23.00 16.07 23.46 29.13 39.02 17.14 20.45 23.08 32.61 31.82 25.53 30.70 14.55 35.21 23.38 21.43 20.31 28.57 17.74 27.27 25.00 23.62 K alternative_donor nmo,I_chr3L_8010749_8032974 chr3L + chr3L_7972274_7973499 chr3L_7972781_7973499 chr3L_7973500_7974082;chr3L_7972181_7972273 89.44 87.50 100.00 90.00 80.00 83.33 100.00 90.91 92.86 87.50 100.00 100.00 85.71 88.89 87.50 90.00 87.50 100.00 100.00 100.00 100.00 55.56 88.89 100.00 75.00 62.50 85.71 83.33 85.71 71.43 87.50 NA 87.50 91.67 60.00 100.00 85.71 100.00 80.00 90.91 75.00 84.62 100.00 87.50 100.00 88.89 100.00 91.67 92.31 100.00 100.00 83.33 100.00 NA 88.89 100.00 NA 100.00 K intron_retention RI_chr2R_9104206_9104265,Fsn,E_chr2R_9109153_9109638,CG4663 chr2R - chr2R_9109310_9109366 chr2R_9109309_9109310;chr2R_9109366_9109367 chr2R_9108945_9109309;chr2R_9109367_9109734 0.00 0.00 0.00 0.00 0.00 0.00 5.00 1.92 1.47 0.00 2.86 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 4.12 0.00 0.00 0.00 0.00 5.00 5.71 1.89 0.00 7.27 0.00 0.00 0.00 0.00 5.45 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 5.06 0.00 0.00 6.45 0.00 5.77 4.08 0.00 0.00 0.00 0.00 4.65 0.00 1.82 K alternative_donor ps,I_chr3R_5243723_5265067,I_chr3R_5243723_5270765,noncoding_15575,I_chr3R_5245770_5265067,I_chr3R_5245770_5269732,I_chr3R_5269733_5270765 chr3R + chr3R_5243723_5257750 chr3R_5245770_5257750 chr3R_5257751_5258205;chr3R_5243705_5243722 60.00 70.00 68.75 55.56 50.00 56.25 64.52 50.00 54.39 31.25 88.89 60.00 42.86 56.52 63.16 71.43 61.11 52.63 57.14 44.26 50.00 60.00 72.22 46.15 69.23 55.00 83.33 87.50 77.78 63.16 58.82 66.67 48.00 53.49 81.82 83.33 56.25 50.00 60.00 83.33 75.00 53.12 55.00 58.82 33.33 75.00 50.00 76.92 52.50 80.00 76.92 58.33 60.00 33.33 52.17 66.67 100.00 80.00 K alternative_acceptor RpL12,I_chr2R_19948517_19948655,RI_chr2R_19948517_19948677,I_chr2R_19948517_19948682 chr2R + chr2R_19948517_19948672;chr2R_19948517_19948682;chr2R_19948517_19948655 chr2R_19948517_19948677 chr2R_19948417_19948516;chr2R_19948683_19948755 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.05 0.00 0.04 0.05 K intron_retention n-syb,I_chr3L_1637270_1637558,metl chr3L - chr3L_1638855_1639041 chr3L_1638854_1638855;chr3L_1639041_1639042 chr3L_1637903_1638854;chr3L_1639042_1639220 26.00 15.00 22.22 36.00 40.91 31.91 30.61 25.86 30.99 8.70 29.41 29.76 30.00 25.58 26.00 20.83 25.00 44.83 24.44 27.62 19.44 20.51 15.91 24.56 16.67 26.83 40.00 35.14 41.38 25.00 50.72 26.67 22.54 17.33 27.59 28.00 32.43 20.00 21.13 33.33 18.75 26.19 25.71 42.00 32.79 20.43 19.40 38.24 28.89 19.30 23.91 26.32 20.24 14.77 30.36 28.57 20.24 18.99 K intron_retention ND42,RI_chr3R_17861471_17861539 chr3R + chr3R_17853503_17853741 chr3R_17853502_17853503;chr3R_17853741_17853742 chr3R_17853498_17853502;chr3R_17853742_17854870 0.00 0.00 0.00 0.00 0.00 1.82 1.27 2.06 1.60 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 5.71 K jcn_only_AD CG18011 chr2R + chr2R_6030854_6030913 chr2R_6030858_6030913 chr2R_6030914_6031175;chr2R_6030698_6030853 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG10069,I_chr2R_17169897_17170495,I_chr2R_17170432_17170491,I_chr2R_17171765_17171886 chr2R + chr2R_17171617_17171886 chr2R_17171617_17171728;chr2R_17171765_17171886 chr2R_17171729_17171764 chr2R_17171048_17171616;chr2R_17171887_17171986 17.14 24.00 19.18 11.11 13.11 16.92 11.43 26.60 16.10 5.88 8.47 9.84 18.52 10.00 15.85 18.52 16.36 18.84 18.31 19.84 11.76 31.08 17.14 18.67 16.28 11.76 25.86 9.80 26.58 12.68 19.75 18.52 22.08 12.24 14.58 25.00 12.07 19.15 18.06 10.77 16.88 19.61 16.95 11.27 23.47 29.47 26.67 23.53 13.33 12.28 20.31 19.51 13.33 32.35 12.24 19.61 18.18 11.21 K intron_retention CG3760,CG3770,CG12851 chr2R + chr2R_20826366_20826496 chr2R_20826365_20826366;chr2R_20826496_20826497 chr2R_20826283_20826365;chr2R_20826497_20826740 5.63 4.46 4.96 6.41 3.70 4.46 10.61 3.12 5.49 5.88 5.95 8.59 3.45 4.12 4.51 3.90 5.56 3.85 6.17 4.00 5.63 6.25 11.57 8.91 14.89 7.79 4.46 11.59 7.78 5.31 4.88 5.30 2.94 4.35 5.68 23.26 4.97 10.28 6.11 5.98 8.47 4.86 6.49 3.91 4.97 5.83 8.57 5.31 5.26 7.14 10.20 10.29 6.67 9.43 4.17 6.82 4.38 3.45 K alternative_acceptor CG17352,I_chr3L_8351006_8351949,I_chr3L_8351036_8351655 chr3L - chr3L_8346513_8346578 chr3L_8346527_8346578 chr3L_8346579_8347283;chr3L_8345596_8346512 77.27 NA NA 77.78 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 77.27 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 87.50 66.67 NA NA NA NA NA 60.00 NA NA NA NA 55.56 NA NA NA NA NA NA NA K intron_retention Iap2,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CEI_chr2R_11826763_11827279 chr2R - chr2R_11821325_11821603 chr2R_11821324_11821325;chr2R_11821603_11821604 chr2R_11821304_11821324;chr2R_11821604_11821670 19.05 NA NA 6.67 NA NA 26.67 20.00 36.36 NA NA 28.57 NA NA 20.00 20.00 NA NA NA 10.71 NA NA 19.05 25.00 NA NA 16.67 11.76 NA NA 0.00 NA 29.41 23.08 NA 6.67 NA NA 12.50 8.70 NA 18.52 NA NA NA 35.29 NA NA 11.76 NA 33.33 NA NA 15.38 NA NA NA NA K jcn_only_AD eIF5,noncoding_24049,EI_chrX_15885411_15885854,RI_chrX_15885416_15885611 chrX - chrX_15885416_15885611;chrX_15885416_15885925;chrX_15885416_15885783 chrX_15885416_15885854 chrX_15885316_15885415;chrX_15885926_15885954 86.25 NA 81.48 77.27 NA NA 88.24 82.35 75.00 NA NA 83.33 NA 100.00 NA 91.67 NA NA NA 92.59 NA NA NA NA NA NA NA NA NA NA 84.21 NA NA 87.50 95.00 NA NA NA NA NA NA 85.00 NA NA NA 90.91 NA NA 81.48 NA NA NA NA NA NA NA NA 88.00 K cassette sda,I_chr3R_22742285_22742350,RI_chr3R_22750984_22752737 chr3R + chr3R_22741631_22750355 chr3R_22741631_22742224;chr3R_22742285_22750355 chr3R_22742225_22742284 chr3R_22741498_22741630;chr3R_22750356_22750983 93.33 90.91 93.75 91.67 100.00 93.33 91.67 93.75 96.43 94.44 NA 88.89 62.50 86.67 92.31 93.75 88.89 90.00 93.75 95.00 100.00 100.00 97.22 100.00 100.00 90.00 89.47 85.00 88.89 95.83 94.12 100.00 86.96 87.50 95.24 93.75 90.48 94.44 100.00 85.19 93.33 91.30 100.00 93.55 100.00 94.74 88.24 86.36 86.96 78.57 87.50 83.33 87.50 NA 100.00 86.67 100.00 77.78 K multi_cassette sol chrX + chrX_21221878_21225120 chrX_21221878_21222886;chrX_21223513_21223779;chrX_21224091_21225120 chrX_21222887_21223512;chrX_21223780_21224090 chrX_21221327_21221877;chrX_21225121_21225440 96.92 95.77 97.92 98.11 94.59 97.50 97.78 94.44 98.17 97.83 93.10 98.85 96.77 96.88 91.84 100.00 96.77 94.87 97.06 96.46 96.55 81.31 97.52 98.10 97.01 90.00 100.00 100.00 96.05 93.94 100.00 85.37 89.19 97.22 94.12 86.05 97.32 98.86 96.30 96.40 96.08 97.46 96.43 96.92 98.46 96.77 98.31 93.81 96.97 97.73 96.88 98.11 97.83 97.78 97.96 96.08 100.00 92.16 K intron_retention Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16108931_16109131 chr3L_16108930_16108931;chr3L_16109131_16109132 chr3L_16108769_16108930;chr3L_16109132_16109341 0.00 0.00 0.00 1.25 0.00 0.00 7.25 0.00 1.27 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 2.38 3.70 2.35 0.00 2.33 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 1.18 0.00 0.00 0.00 1.06 0.00 0.00 0.00 K jcn_only_AA Pi4KIIalpha chr3R - chr3R_1389068_1389263 chr3R_1389095_1389263 chr3R_1389264_1389309;chr3R_1388687_1389067 34.34 28.95 28.00 36.11 48.00 30.43 45.83 43.24 36.05 60.00 26.47 27.27 37.50 24.00 16.22 36.84 34.38 33.33 23.33 32.73 16.13 35.21 42.86 40.00 25.00 45.00 20.59 37.04 39.47 51.52 35.29 NA NA 26.42 38.71 66.67 47.14 35.00 28.57 35.19 NA 30.51 NA 48.48 NA 30.77 19.57 NA 31.71 43.55 36.67 31.71 16.67 28.12 19.35 34.29 17.54 NA N jcn_only_AA I_chrX_16309561_16309689,hang,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16323441_16323548;chrX_16323441_16324653 chrX_16323441_16323563 chrX_16323093_16323440;chrX_16324654_16324797 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Bruce chr3R - chr3R_6151379_6151982 chr3R_6151379_6151453;chr3R_6151754_6151982 chr3R_6151454_6151753 chr3R_6150964_6151378;chr3R_6151983_6152204 3.11 0.00 4.41 0.88 4.44 4.17 2.04 1.72 2.70 6.25 7.27 3.10 0.00 3.17 2.63 4.82 3.51 4.17 3.28 0.92 3.77 2.44 1.37 8.00 3.23 0.00 3.77 8.33 3.92 3.39 3.28 NA 2.78 1.75 6.06 0.00 3.12 0.00 3.39 3.57 0.00 1.69 1.82 1.92 NA NA 0.00 2.53 3.30 NA 2.70 3.85 0.00 NA 2.90 NA NA 5.56 K alternative_donor CG3631 chr3R + chr3R_10705801_10705885;chr3R_10705766_10705885 chr3R_10705805_10705885 chr3R_10705886_10706516;chr3R_10705554_10705765 0.00 NA NA NA NA NA 7.69 NA 7.69 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 20.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K alternative_donor Dyrk3,I_chr4_1233845_1234170 chr4 - chr4_1234147_1234374 chr4_1234147_1234223 chr4_1234032_1234146;chr4_1234375_1234398 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 83.33 100.00 NA 95.65 NA NA NA 100.00 NA NA 87.50 NA NA NA 100.00 100.00 NA NA NA NA NA 90.00 100.00 100.00 NA NA NA 83.33 NA 100.00 NA 100.00 NA NA NA NA 100.00 NA 100.00 100.00 NA NA 100.00 NA NA NA K cassette smi35A,I_chr2L_14197587_14197656,E_chr2L_14222082_14233893,RI_chr2L_14233579_14233647 chr2L - chr2L_14197868_14222016 chr2L_14197868_14217026;chr2L_14217070_14222016 chr2L_14217027_14217069 chr2L_14197657_14197867;chr2L_14222017_14222059 96.30 100.00 100.00 82.61 100.00 87.50 55.00 95.65 96.15 NA NA 91.67 100.00 100.00 100.00 77.78 100.00 87.50 91.67 94.12 NA 90.00 100.00 87.50 NA 88.89 NA NA NA NA 100.00 NA NA 100.00 NA 100.00 NA NA 100.00 91.67 NA 100.00 100.00 NA NA NA NA NA 96.30 90.91 100.00 87.50 NA NA 100.00 NA NA NA N jcn_only_AD tai,I_chr2L_9191814_9206231 chr2L + chr2L_9241270_9241375 chr2L_9241282_9241375 chr2L_9241376_9241549;chr2L_9239822_9241269 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 5.45 0.00 0.00 0.00 4.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.20 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette app,RI_chr3L_12201038_12201989,I_chr3L_12259361_12259754 chr3L - chr3L_12214383_12257720 chr3L_12214383_12233752;chr3L_12233775_12257720 chr3L_12233753_12233774 chr3L_12213078_12214382;chr3L_12257721_12257909 20.00 NA NA 9.09 NA 36.36 10.00 NA 26.67 NA NA 29.41 NA NA 15.79 16.67 NA NA 33.33 25.00 NA NA 26.32 NA NA NA NA NA NA NA NA NA NA 21.05 NA NA NA NA NA 31.25 NA 26.67 NA 20.00 NA NA NA 17.65 14.29 NA 7.69 NA NA NA 17.65 NA NA 17.65 K intron_retention Pink1,F_chrX_6578108_6578160,F_chrX_6578108_6578165,I_chrX_6578115_6578251 chrX + chrX_6581063_6581125 chrX_6581062_6581063;chrX_6581125_6581126 chrX_6580996_6581062;chrX_6581126_6581253 93.09 88.89 90.00 100.00 NA NA 94.12 92.86 87.50 90.00 90.91 93.33 84.62 100.00 91.67 89.47 90.91 90.00 87.50 75.00 100.00 NA 90.00 100.00 NA 100.00 87.50 90.00 100.00 NA 93.33 NA NA 93.33 88.89 NA 100.00 NA 100.00 90.48 100.00 82.35 NA 91.67 93.75 94.44 NA 100.00 93.75 100.00 100.00 91.67 NA NA 100.00 90.91 93.33 95.24 K intron_retention Aldh chr2L + chr2L_9389978_9390039 chr2L_9389977_9389978;chr2L_9390039_9390040 chr2L_9389829_9389977;chr2L_9390040_9390136 0.00 0.34 0.39 0.26 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.00 1.03 0.58 0.00 0.00 0.00 1.68 5.93 0.75 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.71 0.00 0.20 0.00 0.54 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 K intron_retention CG3016 chrX - chrX_5773356_5773409 chrX_5773355_5773356;chrX_5773409_5773410 chrX_5772079_5773355;chrX_5773410_5773866 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 K intron_retention CG31716,I_chr2L_10397648_10398034 chr2L + chr2L_10398220_10398278 chr2L_10398219_10398220;chr2L_10398278_10398279 chr2L_10398035_10398219;chr2L_10398279_10398392 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD betaggt-II,RI_chr2L_2879966_2880043 chr2L + chr2L_2879880_2880043 chr2L_2879966_2880043 chr2L_2880044_2880143;chr2L_2879866_2879879 0.00 0.00 0.00 3.39 0.00 0.00 1.89 0.00 0.99 0.00 0.00 0.00 3.12 2.33 1.67 0.00 0.00 0.00 0.00 1.64 0.00 6.17 0.00 0.00 0.00 0.00 0.00 0.00 4.76 1.28 7.50 0.00 1.46 0.00 0.00 0.00 0.00 2.41 0.00 1.05 0.00 1.01 1.89 2.44 0.00 4.55 0.00 0.00 1.11 2.56 0.00 0.00 0.00 0.00 1.92 0.00 0.71 0.00 K alternative_donor CG7224 chr2L + chr2L_7999168_7999248;chr2L_7999170_7999248;chr2L_7999174_7999248 chr2L_7999176_7999248 chr2L_7999249_7999714;chr2L_7998934_7999167 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention spin,I_chr2R_12013288_12013847 chr2R + chr2R_12020141_12020926 chr2R_12020140_12020141;chr2R_12020926_12020927 chr2R_12020064_12020140;chr2R_12020927_12020988 4.67 3.83 3.80 15.25 4.49 4.44 4.66 8.57 4.17 1.29 5.26 5.69 5.06 6.02 4.23 7.59 4.79 3.42 5.56 3.76 5.00 9.43 3.83 4.51 6.43 5.19 4.65 18.07 4.40 5.24 6.54 7.41 6.90 5.24 3.80 5.92 5.25 3.77 2.48 4.67 5.36 3.77 8.82 7.10 3.30 3.12 1.73 9.77 4.26 6.11 3.91 5.30 2.90 2.82 5.31 2.55 3.41 1.85 K alternative_donor pr-set7 chr3R + chr3R_10142132_10142198;chr3R_10142103_10142198 chr3R_10142094_10142198 chr3R_10142199_10142589;chr3R_10142068_10142093 8.34 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 0.00 NA NA NA NA NA NA NA NA NA K alternative_last_exon endos,I_chr3L_14024099_14024488,I_chr3L_14024103_14024546,noncoding_12505,I_chr3L_14024496_14024546 chr3L - chr3L_14024099_14024488;chr3L_14024103_14024488,chr3L_14024158_14024488 chr3L_14024331_14024488 chr3L_14023907_14024102 chr3L_14024237_14024330 chr3L_14024489_14024495 0.00 0.00 0.00 0.50 0.00 1.33 1.53 0.00 0.40 0.00 0.00 0.81 0.00 0.00 0.00 0.67 0.00 0.00 0.67 0.37 0.00 0.00 0.67 0.00 0.00 0.58 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.65 0.33 0.00 0.72 1.53 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.66 0.00 K intron_retention CG42271,RI_chrX_14127297_14127804 chrX - chrX_14127593_14127804 chrX_14127592_14127593;chrX_14127804_14127805 chrX_14127454_14127592;chrX_14127805_14127904 8.57 0.00 NA 25.71 NA 7.14 22.22 17.65 16.67 0.00 0.00 14.81 NA 15.38 4.00 0.00 NA NA NA 20.69 NA 9.68 15.00 4.35 NA 15.00 22.22 22.73 17.39 3.57 0.00 3.85 15.00 0.00 5.00 42.86 17.65 9.09 16.67 6.35 8.57 11.76 14.29 10.81 5.26 0.00 NA 8.00 6.25 7.14 11.76 0.00 NA NA 0.00 NA 0.00 4.35 K intron_retention Nup358,I_chr3R_21078958_21079044 chr3R + chr3R_21075425_21075944 chr3R_21075424_21075425;chr3R_21075944_21075945 chr3R_21075151_21075424;chr3R_21075945_21078957 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 1.34 0.00 0.00 0.00 0.00 2.38 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.85 0.00 0.00 0.00 K jcn_only_AA EDTP chr2R - chr2R_13320840_13320924;chr2R_13320873_13320924 chr2R_13320861_13320924 chr2R_13320925_13321563;chr2R_13320696_13320839 0.00 0.00 0.00 0.00 4.35 NA 0.00 2.38 5.88 NA NA 3.70 0.00 NA 8.70 0.00 NA 3.23 0.00 0.00 NA 5.88 2.38 0.00 NA NA 0.00 0.00 5.00 0.00 0.00 NA 4.00 0.00 NA 4.17 2.94 0.00 0.00 0.00 7.69 3.23 0.00 8.70 0.00 0.00 5.00 0.00 0.00 4.08 0.00 7.69 NA NA 4.17 2.94 0.00 0.00 K cassette Asx chr2R + chr2R_10394855_10395044 chr2R_10394855_10394920;chr2R_10394987_10395044 chr2R_10394921_10394986 chr2R_10394762_10394854;chr2R_10395045_10395817 35.50 40.00 33.33 59.38 17.65 16.67 39.13 42.86 31.25 35.00 20.00 28.21 41.67 44.44 40.74 25.00 30.00 29.41 30.43 36.00 NA 59.09 20.00 23.53 25.00 18.18 33.33 45.45 20.00 40.00 40.00 41.67 42.86 27.03 29.41 40.00 31.03 45.45 33.33 38.89 38.46 30.23 36.36 40.00 NA 40.00 36.36 59.09 39.39 30.00 38.10 31.25 NA NA 43.33 18.18 NA 33.33 K jcn_only_AA CG3635 chr2L + chr2L_22183467_22183599;chr2L_22183467_22183527 chr2L_22183467_22183607 chr2L_22183394_22183466;chr2L_22183608_22183915 51.92 60.24 62.72 63.19 60.87 60.75 43.12 58.93 56.48 51.85 57.14 50.00 50.67 46.72 62.29 55.83 55.38 58.27 55.03 51.69 52.82 55.30 64.29 50.94 38.40 52.83 68.02 63.64 34.62 53.01 46.54 39.39 56.61 50.44 51.92 30.16 45.03 53.38 53.73 41.59 36.62 55.17 62.11 39.48 46.91 38.65 44.23 33.68 48.66 59.22 46.01 38.10 48.84 45.86 51.95 48.90 60.36 40.83 K intron_retention CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1526399_1526659 chr3L_1526398_1526399;chr3L_1526659_1526660 chr3L_1526334_1526398;chr3L_1526660_1526731 90.00 NA 80.00 100.00 NA 90.91 100.00 94.12 95.65 NA 78.57 31.25 100.00 100.00 90.91 92.86 88.89 NA 100.00 76.47 60.00 NA 91.67 90.00 NA NA 88.89 NA NA NA 77.78 NA NA 93.75 NA NA 66.67 NA NA 88.00 75.00 90.48 NA 90.91 NA 90.00 NA 92.31 80.00 77.78 90.00 NA 63.64 NA 80.00 84.62 70.00 100.00 K intron_retention CG14741 chr3R - chr3R_7897042_7897103 chr3R_7897041_7897042;chr3R_7897103_7897104 chr3R_7896890_7897041;chr3R_7897104_7897250 0.88 1.28 1.51 5.64 0.56 0.39 3.19 0.60 1.05 0.00 0.96 0.77 0.97 0.00 1.60 1.06 0.47 0.38 1.06 0.67 3.07 0.00 0.72 0.68 4.53 3.01 3.10 7.14 4.01 0.88 0.88 2.76 1.96 0.00 1.65 11.33 0.52 1.56 0.70 0.90 8.96 0.59 0.00 0.84 0.00 2.39 0.00 0.86 0.86 1.13 0.50 0.00 0.88 0.00 0.67 0.52 0.88 1.49 K intron_retention RpL15 chr3LHet + chr3LHet_2397859_2398127 chr3LHet_2397858_2397859;chr3LHet_2398127_2398128 chr3LHet_2397802_2397858;chr3LHet_2398128_2398454 98.69 99.13 96.27 99.25 99.32 99.18 98.53 98.08 98.27 98.84 99.41 98.19 97.33 98.00 95.98 98.69 99.43 98.21 97.40 98.82 98.24 99.51 100.00 98.95 99.12 97.33 100.00 97.22 98.99 98.91 99.83 96.91 99.38 99.30 100.00 98.41 99.17 98.31 99.09 98.57 98.88 97.33 98.67 100.00 97.37 95.61 99.06 98.26 97.29 99.17 98.65 96.77 96.97 100.00 96.47 99.17 98.88 96.10 K jcn_only_AA CG16952,RI_chrX_15764587_15765393,I_chrX_15766003_15766047 chrX + chrX_15766003_15766068;chrX_15766003_15766047 chrX_15766003_15766062 chrX_15765903_15766002;chrX_15766069_15766147 91.89 93.75 92.59 90.91 91.30 NA 91.23 84.62 97.18 NA 87.50 89.09 96.77 92.00 93.94 95.35 87.50 NA 87.50 97.87 NA NA 100.00 NA NA 85.71 NA NA NA NA 91.89 NA NA 87.04 NA NA NA NA NA 88.24 NA 96.77 96.97 92.59 NA NA NA NA 90.00 NA 87.10 NA NA NA 95.92 NA NA NA K jcn_only_AD CG30015,I_chr2R_6743814_6744285,HL05382 chr2R - chr2R_6750461_6762075 chr2R_6750461_6761358 chr2R_6750328_6750460;chr2R_6762076_6762097 55.98 80.00 44.44 58.73 66.67 56.52 64.71 46.58 62.07 46.43 74.07 87.72 37.93 53.33 58.70 52.24 60.00 42.31 66.67 66.67 79.41 59.46 65.22 54.84 50.00 72.41 81.58 NA NA 40.43 56.41 NA 23.53 46.75 38.78 61.29 59.38 NA 55.56 75.38 41.94 51.92 66.67 80.43 48.28 19.15 30.77 36.67 66.13 NA 50.00 NA NA 50.00 54.39 NA NA 43.33 K intron_retention CG15237 chr2R - chr2R_2696862_2696928 chr2R_2696861_2696862;chr2R_2696928_2696929 chr2R_2696480_2696861;chr2R_2696929_2697016 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 14.71 0.00 1.06 0.00 0.00 2.56 6.35 32.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 2.73 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor arr,I_chr2R_9343426_9343486,I_chr2R_9347031_9370659 chr2R - chr2R_9369590_9370659 chr2R_9369590_9370634 chr2R_9369281_9369589;chr2R_9370660_9370692 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG2258,I_chrX_7993650_7995126,I_chrX_7994188_7995101 chrX - chrX_7991107_7991194 chrX_7991106_7991107;chrX_7991194_7991195 chrX_7990988_7991106;chrX_7991195_7991399 0.00 NA NA NA NA NA NA 5.88 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention Rnp4F,I_chrX_5214525_5214591 chrX - chrX_5215771_5215851 chrX_5215770_5215771;chrX_5215851_5215852 chrX_5215595_5215770;chrX_5215852_5216360 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.00 0.00 NA 0.00 0.00 1.69 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention scramb2 chr3L - chr3L_3045132_3045722 chr3L_3045131_3045132;chr3L_3045722_3045723 chr3L_3044973_3045131;chr3L_3045723_3046216 0.53 0.00 1.44 1.00 0.00 0.00 3.03 1.14 0.00 0.00 1.15 1.27 0.00 0.00 1.35 1.46 0.00 0.00 0.00 0.00 2.15 2.46 0.00 0.59 0.00 1.47 3.09 4.23 1.31 0.00 1.22 0.00 0.61 0.00 2.00 1.57 0.69 0.00 0.53 1.29 0.00 0.48 0.00 0.00 0.00 0.00 0.74 0.55 1.15 0.00 1.48 0.00 0.00 1.67 1.26 0.74 0.00 0.00 K intron_retention CG14414,I_chrX_14474880_14474927 chrX + chrX_14474880_14474997 chrX_14474879_14474880;chrX_14474997_14474998 chrX_14474780_14474879;chrX_14474998_14475027 55.20 66.67 78.57 64.29 88.89 69.23 75.00 42.86 55.56 50.00 54.55 53.85 NA 66.67 73.33 85.71 87.50 NA 87.50 64.29 NA 50.00 54.84 38.71 46.15 100.00 59.09 28.57 47.62 50.00 37.50 37.04 41.94 75.00 56.25 61.90 44.00 33.33 56.25 44.83 50.00 56.00 NA 50.00 43.59 47.73 53.85 42.55 57.14 58.82 69.57 NA 51.72 60.71 83.33 44.83 72.41 35.71 K intron_retention CG6199 chr3L - chr3L_11192493_11195314 chr3L_11192492_11192493;chr3L_11195314_11195315 chr3L_11192366_11192492;chr3L_11195315_11195440 3.28 0.00 0.00 0.88 3.28 5.77 5.68 1.49 2.17 0.00 7.69 1.74 5.80 4.69 1.37 2.11 2.86 3.03 5.19 4.00 4.41 6.38 3.12 2.70 7.89 1.41 3.28 0.00 0.00 3.70 6.33 6.56 0.00 3.79 0.00 4.44 2.94 6.98 4.00 1.81 4.17 2.27 0.00 1.25 0.00 4.00 8.00 0.00 3.31 2.70 4.11 4.65 2.90 5.71 3.49 3.28 6.78 2.38 K intron_retention Cdc42,I_chrX_19591186_19591967,I_chrX_19591567_19591967,I_chrX_19591671_19591967 chrX + chrX_19591186_19591967 chrX_19591185_19591186;chrX_19591967_19591968 chrX_19591086_19591185;chrX_19591968_19592067 98.69 99.22 97.73 98.63 97.28 97.74 98.08 98.10 98.53 98.59 100.00 98.37 97.67 98.74 99.07 98.96 98.22 98.51 99.51 98.51 99.49 100.00 97.67 99.23 98.68 99.08 97.59 98.41 95.12 96.81 97.70 98.46 99.45 98.95 100.00 98.41 98.65 98.82 98.23 99.26 98.85 98.96 98.69 98.96 98.23 98.90 98.51 99.09 98.92 100.00 100.00 98.86 98.33 100.00 98.36 98.81 99.12 100.00 K jcn_only_AA I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_927771_929704,CG32021,RI_chr4_928180_928245,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_928180_928245;chr4_928193_928245 chr4_928177_928245 chr4_928246_928314;chr4_928109_928176 65.22 46.43 68.89 63.89 70.73 66.67 61.49 63.27 70.00 59.32 73.17 62.35 72.41 54.84 80.00 67.21 61.76 69.39 85.37 59.21 70.83 63.71 63.37 63.95 64.62 72.73 61.33 69.09 68.92 61.54 63.79 63.64 46.94 65.52 69.70 57.33 63.83 53.03 56.31 70.55 53.85 65.22 66.00 67.12 75.47 65.85 64.71 65.38 66.23 68.18 74.44 67.69 57.69 67.50 64.58 60.00 61.70 65.22 K intron_retention Df31,RE_chr2L_21628206_21629662,I_chr2L_21628206_21629666,I_chr2L_21628210_21628515,I_chr2L_21628210_21628944,I_chr2L_21628210_21629216,EI_chr2L_21628210_21629715,REI_chr2L_21628210_21629884,I_chr2L_21628224_21629666,I_chr2L_21628734_21629666 chr2L - chr2L_21628210_21629715 chr2L_21628209_21628210;chr2L_21629715_21629716 chr2L_21628124_21628209;chr2L_21629716_21629762 99.88 100.00 100.00 99.66 99.73 100.00 99.86 99.88 100.00 99.77 99.72 99.85 100.00 100.00 100.00 99.86 99.78 100.00 99.83 99.88 100.00 99.64 99.88 99.84 100.00 99.30 99.71 99.55 99.48 99.56 99.69 99.55 99.68 100.00 100.00 99.68 99.84 100.00 100.00 100.00 99.60 100.00 99.79 100.00 100.00 100.00 99.81 100.00 100.00 100.00 100.00 99.81 99.72 100.00 100.00 100.00 100.00 100.00 K intron_retention CG42550 chr3R - chr3R_3826595_3826641 chr3R_3826594_3826595;chr3R_3826641_3826642 chr3R_3826527_3826594;chr3R_3826642_3826710 81.80 69.23 81.25 75.00 60.00 93.33 80.95 83.33 74.29 87.50 64.29 84.62 66.67 73.33 85.00 88.89 80.00 93.33 88.24 80.00 NA NA 92.31 69.23 63.64 61.54 73.33 NA NA NA 85.00 69.23 NA 77.42 88.89 91.67 NA 66.67 NA 78.95 60.00 85.19 82.35 90.00 80.00 80.95 88.89 NA 86.67 88.24 84.21 53.33 100.00 90.91 95.65 63.64 95.65 88.24 K intron_retention Tfb4,I_chr2L_1156009_1158078,I_chr2L_1153732_1157370,I_chr2L_1163632_1163759 chr2L - chr2L_1150327_1150378 chr2L_1150326_1150327;chr2L_1150378_1150379 chr2L_1150131_1150326;chr2L_1150379_1150559 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 2.20 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9003728_9004854;chrX_9004021_9004854;chrX_9003790_9004854 chrX_9003918_9004854 chrX_9004855_9004862;chrX_9003721_9003727 0.00 NA NA 0.00 NA NA 3.33 0.00 2.56 NA NA 3.85 NA 3.57 0.00 2.33 NA NA 0.00 0.00 NA NA 0.00 NA NA 4.17 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 2.94 NA NA NA K alternative_donor CG9821,I_chr3R_4644986_4645248,I_chr3R_4644986_4645577,I_chr3R_4644986_4645648,I_chr3R_4644986_4646263,RI_chr3R_4644986_4646264,RI_chr3R_4645903_4646033 chr3R - chr3R_4644986_4645248;chr3R_4644986_4645577;chr3R_4644986_4645649 chr3R_4644986_4646033 chr3R_4644886_4644985;chr3R_4646034_4646133 23.43 24.09 23.43 24.04 28.04 28.22 21.76 24.69 23.79 31.34 27.94 20.73 28.40 25.00 22.92 21.82 27.84 21.15 24.81 21.53 20.34 20.39 17.95 16.50 18.39 23.98 23.24 23.53 50.00 29.17 26.16 29.17 28.83 25.12 21.88 21.77 15.22 25.37 19.54 23.41 38.60 23.94 18.75 15.38 35.29 21.98 18.99 31.51 22.63 23.61 23.40 25.81 14.63 13.89 22.65 20.69 19.23 27.78 K cassette CG9171,RI_chr2L_5792418_5799117,I_chr2L_5799412_5800043 chr2L - chr2L_5787985_5800043 chr2L_5787985_5799117;chr2L_5799273_5800043 chr2L_5799118_5799272 chr2L_5787965_5787984;chr2L_5800044_5800143 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 66.67 NA NA 100.00 92.31 90.00 100.00 94.12 91.67 100.00 100.00 91.67 NA NA 100.00 85.71 NA 100.00 NA NA NA NA 87.50 NA NA 100.00 NA NA 87.50 NA NA NA NA 86.67 100.00 100.00 NA NA NA 100.00 93.75 NA NA 100.00 NA NA 90.00 NA NA 100.00 K alternative_acceptor Pur-alpha,I_chr4_581447_585166 chr4 + chr4_581038_581099 chr4_581038_581096 chr4_580998_581037;chr4_581100_581209 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA 87.50 NA 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K cassette CG10260 chrX + chrX_2520959_2521895 chrX_2520959_2521456;chrX_2521517_2521895 chrX_2521457_2521516 chrX_2519897_2520958;chrX_2521896_2522397 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908142_9908424,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907848_9908424;chr2L_9908142_9908424 chr2L_9907784_9908424 chr2L_9908425_9908505;chr2L_9907756_9907783 78.67 80.43 74.29 78.85 76.92 71.43 73.47 82.28 76.58 64.29 80.00 74.32 73.33 76.60 77.78 78.87 81.63 83.72 84.21 79.12 78.57 67.50 83.54 85.71 78.05 82.93 80.95 76.92 78.95 68.97 77.14 76.00 63.24 82.35 78.57 84.62 78.85 81.40 80.85 77.03 73.08 78.95 81.48 85.42 68.18 85.00 77.14 60.71 78.67 77.78 76.06 76.92 84.38 81.82 83.05 77.14 84.00 78.95 K intron_retention gw,I_chr4_678308_678527,I_chr4_679135_681671 chr4 - chr4_678311_678527 chr4_678310_678311;chr4_678527_678528 chr4_676842_678310;chr4_678528_678627 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Npc2b,I_chr3R_9916602_9917530 chr3R + chr3R_9916599_9917019 chr3R_9916602_9917019 chr3R_9917020_9917123;chr3R_9916502_9916598 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG11880,I_chr3R_24949827_24951052,CE_chr3R_24962426_24962797 chr3R + chr3R_24949827_24951052;chr3R_24949827_24951126 chr3R_24949827_24951129 chr3R_24949727_24949826;chr3R_24951130_24951152 5.43 1.00 9.65 4.55 6.03 3.74 4.49 5.88 3.27 5.43 7.61 5.49 3.37 11.82 5.11 6.43 4.00 7.77 4.31 5.80 4.88 3.03 7.56 8.99 9.88 7.19 5.30 8.44 4.02 4.32 5.66 4.86 7.49 3.59 3.70 8.00 2.67 5.26 2.70 5.22 6.06 5.86 0.00 4.92 7.64 3.33 7.45 5.86 4.17 4.92 8.11 9.20 2.00 0.00 6.71 7.14 6.33 8.77 K alternative_donor CG2924,I_chrX_2161327_2161790,REI_chrX_2161327_2162919,I_chrX_2163738_2164560,I_chrX_2168373_2168893 chrX - chrX_2161327_2162970 chrX_2161327_2161790 chrX_2161227_2161326;chrX_2162971_2163019 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Bet3,Nf-YA chr3L - chr3L_9435067_9435223 chr3L_9435066_9435067;chr3L_9435223_9435224 chr3L_9433670_9435066;chr3L_9435224_9435352 5.71 0.00 3.85 6.38 0.00 NA 12.00 11.11 5.17 0.00 19.05 8.51 NA 0.00 12.12 8.33 0.00 8.33 0.00 10.42 4.76 0.00 6.06 5.71 NA NA 9.30 15.00 4.76 0.00 5.00 0.00 4.35 9.68 0.00 7.14 2.27 0.00 6.56 5.88 14.29 7.32 NA 0.00 0.00 11.43 6.67 0.00 7.14 9.52 0.00 0.00 5.88 6.67 0.00 8.33 5.71 0.00 K jcn_only_AD ced-6,I_chr2R_5324717_5324924,I_chr2R_5328640_5328696 chr2R - chr2R_5325238_5329011;chr2R_5325238_5329037 chr2R_5325238_5328696 chr2R_5324931_5325237;chr2R_5329038_5329082 98.06 99.01 97.62 97.96 96.67 98.23 98.78 96.68 98.26 94.74 99.20 96.43 99.28 100.00 95.03 99.31 99.21 96.43 98.48 98.92 100.00 89.47 97.66 95.92 100.00 97.74 98.53 97.62 97.37 98.00 98.51 95.24 94.12 99.00 100.00 100.00 97.81 96.58 100.00 94.89 98.46 97.95 98.11 98.65 97.87 99.01 100.00 96.77 97.68 96.71 97.74 97.96 100.00 100.00 97.08 98.06 100.00 98.59 K alternative_acceptor CG11523 chr3L - chr3L_22259084_22259175 chr3L_22259087_22259175 chr3L_22259176_22259747;chr3L_22258906_22259083 92.86 NA NA 91.67 NA NA 90.91 95.24 92.86 NA NA 92.86 77.78 100.00 100.00 95.00 NA NA 100.00 92.86 NA NA NA NA NA NA NA NA 87.50 NA 100.00 84.62 85.71 93.75 100.00 NA NA NA NA 87.50 85.00 94.12 NA NA 83.33 96.15 100.00 80.00 93.33 87.50 87.50 NA NA 75.00 90.00 80.00 NA 96.77 K jcn_only_AA Idh,I_chr3L_8351006_8351949,I_chr3L_8351036_8351655 chr3L - chr3L_8351006_8353892 chr3L_8351036_8353892 chr3L_8353893_8353937;chr3L_8350936_8351005 1.90 0.00 1.92 0.00 2.94 3.57 4.90 2.20 3.97 16.46 0.00 3.30 0.00 3.45 1.89 1.09 0.00 0.00 0.00 0.00 4.35 9.72 3.95 3.05 1.52 NA 2.04 5.43 2.78 0.00 2.00 0.00 2.88 1.37 2.74 1.47 0.69 3.45 0.00 5.26 2.90 3.70 2.94 1.52 3.17 0.63 1.12 1.28 1.00 2.02 0.80 2.24 1.33 4.29 0.00 1.23 1.27 0.00 K cassette sdt,E_chrX_8118081_8119115,C_chrX_8118081_8119117,I_chrX_8131684_8131842 chrX + chrX_8118081_8121903 chrX_8118081_8119111;chrX_8120117_8121903 chrX_8119112_8120116 chrX_8117989_8118080;chrX_8121904_8122131 60.42 61.33 54.72 87.93 65.22 59.57 70.00 72.55 69.83 60.00 39.13 67.27 60.00 65.71 64.29 84.44 17.39 48.65 73.68 76.52 47.83 67.74 61.63 51.90 56.60 66.67 60.61 46.15 53.70 58.21 68.42 51.43 72.83 75.81 50.94 57.97 63.27 54.55 63.87 39.58 65.52 67.57 72.41 57.29 53.70 48.98 60.42 56.57 67.42 52.54 53.09 58.33 69.23 47.50 68.75 60.00 55.17 75.00 K intron_retention osa chr3R - chr3R_13519636_13519857 chr3R_13519635_13519636;chr3R_13519857_13519858 chr3R_13519437_13519635;chr3R_13519858_13520017 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 0.55 1.32 0.00 0.00 0.00 0.00 1.54 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 1.20 0.76 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD SNF4Agamma,I_chr3R_16982134_16982890 chr3R + chr3R_17033390_17036510 chr3R_17036428_17036510 chr3R_17036511_17036801 4.17 2.08 7.14 2.17 2.44 6.82 5.10 3.37 4.62 0.00 9.80 3.45 1.89 1.52 6.67 6.59 4.55 1.72 3.12 4.05 3.08 4.44 4.17 4.17 4.88 2.44 4.05 3.28 1.72 8.33 3.80 6.06 4.08 3.03 4.65 21.74 7.14 4.44 3.23 2.90 7.81 3.23 10.87 7.35 9.38 15.38 5.56 3.45 6.82 6.41 4.94 3.85 0.00 0.00 6.15 4.17 6.82 6.41 K jcn_only_AD Zyx102EF,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1080463_1081118 chr4_1080463_1081038 chr4_1080446_1080462;chr4_1081119_1081180 97.50 95.45 96.77 98.48 NA NA 97.44 96.43 98.31 NA 100.00 90.32 100.00 100.00 82.14 100.00 95.24 100.00 100.00 97.56 NA NA 96.77 95.65 86.36 100.00 100.00 NA NA 100.00 92.86 NA 100.00 93.33 NA NA NA 95.45 NA 100.00 100.00 100.00 NA NA NA 100.00 NA NA 96.77 82.61 94.59 NA NA NA 96.43 NA 100.00 94.44 K intron_retention Pkn,I_chr2R_5171635_5172166 chr2R - chr2R_5141921_5141985 chr2R_5141920_5141921;chr2R_5141985_5141986 chr2R_5141780_5141920;chr2R_5141986_5142093 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 K jcn_only_AD F_chr2L_15260838_15261717,cul-3 chr2L - chr2L_15271144_15271833;chr2L_15271144_15271322 chr2L_15271144_15271202 chr2L_15270905_15271143;chr2L_15271834_15271894 8.82 9.09 5.00 8.39 5.77 11.54 7.46 8.66 7.69 NA 11.63 12.77 8.82 8.20 10.53 6.73 11.59 6.67 7.95 9.17 9.52 31.15 10.34 9.09 17.39 8.05 8.75 12.12 11.63 14.52 13.85 4.35 15.00 7.63 10.17 4.65 16.67 10.42 4.08 9.46 NA 6.87 5.26 12.16 8.00 8.82 8.82 12.50 5.19 8.00 8.45 7.69 3.85 10.34 10.59 2.78 8.11 15.62 K intron_retention CG8412,I_chr3R_5583152_5583200 chr3R + chr3R_5583152_5583217 chr3R_5583151_5583152;chr3R_5583217_5583218 chr3R_5583052_5583151;chr3R_5583218_5583300 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 4.55 0.00 0.00 5.26 0.00 0.00 0.00 3.85 0.00 0.00 0.00 1.59 0.00 21.74 9.38 0.00 10.53 0.00 4.55 NA 7.41 4.17 3.39 0.00 0.00 5.56 0.00 0.00 2.56 0.00 3.23 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.88 3.33 6.06 0.00 NA 0.00 0.00 0.00 0.00 NA K cassette Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16107821_16108768 chr3L_16107821_16107893;chr3L_16107944_16108768 chr3L_16107894_16107943 chr3L_16107721_16107820;chr3L_16108769_16108930 4.32 5.21 6.67 2.00 4.26 4.88 4.48 2.74 6.29 11.32 25.64 8.13 2.27 4.65 6.12 5.26 2.38 4.65 2.70 2.43 14.63 7.75 3.92 2.05 2.38 12.50 5.26 5.93 9.90 3.23 6.25 5.00 3.23 3.88 2.60 2.73 3.35 4.14 4.52 4.32 5.26 2.44 2.94 4.69 4.55 3.75 2.27 4.76 4.31 1.22 3.97 1.72 8.97 5.88 2.22 2.63 1.59 8.82 K intron_retention RI_chr3L_20370940_20371530,I_chr3L_20374844_20374891,fbl chr3L + chr3L_20379955_20381768 chr3L_20379954_20379955;chr3L_20381768_20381769 chr3L_20379894_20379954;chr3L_20381769_20381947 8.61 0.00 NA 50.00 NA NA NA 15.00 20.00 NA NA 5.00 NA NA NA 20.00 NA NA NA 17.39 NA NA 33.33 5.56 NA 7.69 23.53 NA NA NA NA NA NA 21.43 NA NA 10.00 NA 0.00 7.14 NA 9.52 NA 4.76 NA NA 0.00 0.00 16.67 0.00 6.67 NA NA NA NA NA NA NA N cassette I_chrX_19573364_19573474,Mer,E_chrX_19584965_19587100,CG14229 chrX - chrX_19585968_19586333 chrX_19585968_19586064;chrX_19586275_19586333 chrX_19586065_19586274 chrX_19585731_19585967;chrX_19586334_19587282 79.55 83.67 75.00 73.68 100.00 70.00 83.56 81.25 83.96 100.00 73.17 74.12 74.00 100.00 83.64 83.33 79.07 66.67 79.59 73.00 83.33 85.07 81.82 80.65 100.00 79.17 82.61 83.33 69.44 63.93 75.64 69.81 63.11 79.76 79.25 100.00 85.00 80.95 82.93 83.17 100.00 75.79 79.55 85.00 69.84 73.26 74.36 57.89 80.61 91.46 79.22 82.93 72.73 75.56 77.19 78.12 78.95 57.66 K jcn_only_AD CG5284,I_chr3L_16086347_16086804 chr3L + chr3L_16086347_16086804 chr3L_16086749_16086804 chr3L_16086805_16086904;chr3L_16086247_16086346 100.00 100.00 100.00 100.00 100.00 99.02 100.00 100.00 100.00 100.00 99.28 99.45 100.00 98.89 100.00 100.00 99.26 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.12 99.26 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.11 100.00 98.67 100.00 100.00 100.00 100.00 100.00 100.00 99.38 100.00 100.00 100.00 100.00 100.00 100.00 98.84 K jcn_only_AD inaE chrX + chrX_13678310_13679739;chrX_13678223_13679739 chrX_13678262_13679739 chrX_13679740_13679985;chrX_13677782_13678222 1.90 2.27 0.00 0.00 0.00 5.26 0.00 2.30 0.74 0.00 3.57 1.35 0.00 1.67 1.92 2.97 2.22 0.00 0.00 0.93 0.00 10.53 3.85 4.44 2.94 0.00 0.00 3.85 3.03 4.17 4.55 3.33 1.89 1.01 4.26 5.00 1.45 0.00 0.00 1.79 5.77 2.53 1.82 2.17 NA 6.25 0.00 7.02 1.89 0.00 2.90 5.56 0.00 0.00 0.00 4.35 2.78 2.94 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2388671_2395659 chrX_2388671_2390808;chrX_2390959_2391350;chrX_2391522_2393243;chrX_2393712_2395659 chrX_2390809_2390958;chrX_2391351_2391521;chrX_2393244_2393711 chrX_2388641_2388670;chrX_2395660_2395759 25.00 NA NA NA NA NA NA NA 0.00 NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG17082,I_chr2R_632143_635290,R_chr2R_642176_644740,I_chr2R_644094_644145,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_632400_636726 chr2R_632399_632400;chr2R_636726_636727 chr2R_632352_632399;chr2R_636727_636891 45.45 NA NA NA NA NA 35.29 NA NA NA NA NA NA NA NA 45.45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 45.45 NA NA NA NA NA NA NA NA NA K cassette Pur-alpha,I_chr4_581447_585166 chr4 + chr4_578795_580720 chr4_578795_578850;chr4_578906_580720 chr4_578851_578905 chr4_578726_578794;chr4_580721_580926 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor Mgat2,I_chr3R_25845406_25845472,I_chr3R_25845406_25846373 chr3R - chr3R_25845406_25845472;chr3R_25845406_25847371;chr3R_25845406_25846373 chr3R_25845406_25847670 chr3R_25845317_25845405;chr3R_25847671_25847898 0.00 5.88 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 3.45 0.00 4.55 4.17 0.00 0.00 0.00 0.00 6.67 13.04 5.88 0.00 0.00 0.00 4.76 0.00 4.76 5.88 7.69 5.00 0.00 5.56 3.57 0.00 0.00 5.56 0.00 0.00 10.34 3.85 0.00 4.35 0.00 0.00 0.00 5.26 7.69 10.00 0.00 K alternative_donor endos,I_chr3L_14024099_14024488,I_chr3L_14024103_14024158,I_chr3L_14024103_14024546,noncoding_12505,I_chr3L_14024496_14024546 chr3L - chr3L_14024103_14024488;chr3L_14024103_14024158;chr3L_14024103_14024407 chr3L_14024103_14024546 chr3L_14024003_14024102;chr3L_14024547_14024588 3.91 5.00 3.53 0.77 4.55 1.41 5.21 0.78 3.91 5.97 2.60 0.79 4.65 2.63 0.93 3.77 2.78 1.22 2.00 3.80 1.32 10.91 12.36 9.40 3.92 0.00 1.01 5.26 3.23 4.84 0.00 3.70 19.54 4.20 3.03 1.82 6.41 9.84 6.25 5.84 1.52 4.40 4.11 1.45 4.08 4.42 4.05 4.40 2.61 9.18 2.56 0.00 3.33 8.45 1.04 4.88 6.12 5.97 K jcn_only_AA CG7987,RI_chr3R_10400799_10401492 chr3R - chr3R_10400608_10401492;chr3R_10400799_10401492 chr3R_10400782_10401492 chr3R_10401493_10401559;chr3R_10400270_10400607 43.17 29.79 41.86 32.14 40.74 31.58 66.23 52.86 51.22 NA 37.04 48.54 88.46 54.00 40.82 35.80 47.83 25.71 60.38 40.74 31.82 44.07 30.51 26.09 40.00 57.89 32.65 23.53 50.00 45.00 42.42 43.48 47.83 41.07 54.05 41.18 36.36 26.67 39.02 57.32 NA 45.31 47.06 48.39 23.81 50.00 48.48 53.70 44.33 NA 43.55 51.52 47.83 42.86 41.07 20.69 33.33 45.16 K intron_retention Mt2,I_chr2L_12099367_12099435 chr2L + chr2L_12096647_12096695 chr2L_12096646_12096647;chr2L_12096695_12096696 chr2L_12096635_12096646;chr2L_12096696_12097675 15.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA 0.00 NA K intron_retention Vps45,CG16789 chr3R + chr3R_5390103_5390153 chr3R_5390102_5390103;chr3R_5390153_5390154 chr3R_5389904_5390102;chr3R_5390154_5391814 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 N cassette spri,I_chrX_10404621_10469422,I_chrX_10413811_10440661,I_chrX_10417598_10440661 chrX - chrX_10417598_10440661;chrX_10413811_10440661 chrX_10413811_10438418,chrX_10417598_10438418;chrX_10438538_10440661 chrX_10438419_10438537 chrX_10413711_10413810;chrX_10440662_10440749 88.89 NA 100.00 87.50 85.71 NA 90.91 91.67 100.00 100.00 85.71 90.00 83.33 NA 90.00 71.43 NA NA 88.89 94.74 87.50 80.95 87.50 100.00 100.00 100.00 100.00 85.71 71.43 100.00 100.00 83.33 66.67 93.33 85.71 90.91 100.00 100.00 78.57 94.12 83.33 91.67 85.71 84.62 100.00 87.50 87.50 88.89 93.75 83.33 85.71 87.50 85.71 NA 100.00 80.00 NA NA K intron_retention cm chrX - chrX_6904878_6904932 chrX_6904877_6904878;chrX_6904932_6904933 chrX_6904552_6904877;chrX_6904933_6905020 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 2.27 0.00 0.00 0.00 0.00 0.00 0.00 2.63 2.56 3.33 0.00 4.08 0.00 3.77 NA 0.00 3.45 0.00 3.12 2.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA RhoGAP71E,I_chr3L_15583097_15589765 chr3L + chr3L_15582377_15582458 chr3L_15582377_15582436 chr3L_15581999_15582376;chr3L_15582459_15583096 4.17 NA NA NA NA NA 8.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3.57 NA NA NA NA NA NA NA 0.00 NA NA 7.14 0.00 NA NA NA NA NA 4.17 4.76 NA NA NA NA 0.00 NA 4.88 NA NA NA NA NA NA NA NA NA NA K intron_retention scra,EI_chr2R_3480349_3480405 chr2R + chr2R_3480039_3480199 chr2R_3480038_3480039;chr2R_3480199_3480200 chr2R_3479867_3480038;chr2R_3480200_3480313 1.26 0.97 0.93 0.77 0.00 2.34 1.26 1.26 1.10 0.00 0.00 1.50 0.00 1.61 0.00 2.15 0.00 1.52 1.43 0.83 0.00 1.01 1.63 0.91 1.23 2.16 3.51 1.80 0.84 0.80 1.38 0.84 0.52 0.76 1.73 1.26 0.71 2.44 0.65 1.30 1.05 1.36 2.72 1.35 1.37 2.07 1.89 0.00 1.27 3.57 1.85 0.00 3.03 1.91 1.06 3.52 1.87 1.09 K intron_retention Ca-P60A,I_chr2R_19817636_19817680,I_chr2R_19820338_19823289 chr2R - chr2R_19816955_19817022 chr2R_19816954_19816955;chr2R_19817022_19817023 chr2R_19816837_19816954;chr2R_19817023_19817140 0.00 0.00 0.00 0.45 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 2.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA eIF-1A chr3R + chr3R_14100864_14107415 chr3R_14100864_14101131 chr3R_14100759_14100863;chr3R_14107416_14107515 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA tou,I_chr2R_7468394_7468453,RI_chr2R_7474644_7475275,I_chr2R_7479681_7491857,I_chr2R_7504956_7505020 chr2R - chr2R_7469255_7470519 chr2R_7469651_7470519 chr2R_7470520_7474530;chr2R_7469133_7469254 7.41 7.03 2.27 7.41 4.94 1.43 7.87 9.24 5.38 7.62 5.80 4.95 15.94 8.79 4.27 10.74 4.82 8.41 10.71 8.89 4.11 5.96 8.29 9.43 4.39 2.38 7.46 14.42 9.00 7.96 10.17 6.93 7.69 2.76 8.55 14.55 5.95 7.56 4.70 7.52 8.74 7.33 3.85 6.75 4.86 8.39 6.61 7.57 7.61 13.86 7.95 4.17 6.32 4.94 5.36 5.60 7.69 5.53 K alternative_acceptor I_chr2L_114992_156735,RI_chr2L_114992_155545,RI_chr2L_114992_155566,I_chr2L_114992_155637,I_chr2L_114992_156175,RI_chr2L_155430_155637,CG11455,CG3436 chr2L + chr2L_155430_155493;chr2L_155430_155566 chr2L_155430_155637 chr2L_155424_155429;chr2L_155638_155645 1.52 1.52 1.64 4.55 3.64 1.72 1.20 2.15 1.57 0.00 2.04 1.79 0.00 1.72 4.00 2.06 0.00 1.45 1.52 2.10 0.00 5.26 1.25 2.27 0.00 0.00 1.49 3.03 2.56 0.00 0.00 2.13 2.33 1.08 0.00 0.00 1.23 1.79 0.00 1.08 3.03 1.83 4.76 3.80 3.12 1.09 4.30 0.00 3.09 0.00 1.39 0.00 0.00 1.12 1.23 0.00 1.96 0.00 K alternative_donor CG14767,RI_chr2R_4607538_4607606,CG30357,RI_chr2R_4610372_4610761 chr2R - chr2R_4607538_4610761 chr2R_4607538_4607606 chr2R_4607438_4607537;chr2R_4610762_4610861 1.09 0.68 0.95 0.61 1.00 0.95 4.65 1.38 1.27 4.05 1.14 0.95 1.91 1.55 1.09 0.99 1.72 1.91 1.92 2.35 1.25 1.47 0.57 0.85 1.40 2.94 1.60 1.19 0.84 0.76 2.87 1.00 0.82 1.59 1.32 1.46 0.68 0.61 0.72 1.00 1.14 1.15 1.93 0.56 1.08 1.05 0.65 2.62 1.47 0.78 0.90 0.89 0.49 0.53 1.47 0.59 0.57 1.24 K cassette HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13165623_13176198 chrX_13165623_13170467;chrX_13170581_13176198 chrX_13170468_13170580 chrX_13165515_13165622;chrX_13176199_13176262 93.52 97.47 98.88 81.48 95.00 97.50 76.38 96.89 93.65 93.10 87.32 91.84 89.33 95.18 95.10 92.45 94.12 93.75 94.81 92.50 95.45 84.95 94.57 93.52 81.33 81.32 87.61 94.87 84.42 93.39 91.40 96.23 95.08 94.57 98.75 77.91 95.83 89.69 97.09 94.61 84.72 94.29 96.61 95.74 93.18 94.81 90.16 93.29 92.12 97.06 90.70 95.71 93.02 88.10 92.11 96.83 91.30 92.75 K intron_retention E_chr3R_6935653_7037028,nocturnin,RI_chr3R_7026291_7032627,I_chr3R_7029508_7030286 chr3R + chr3R_7032978_7033081 chr3R_7032977_7032978;chr3R_7033081_7033082 chr3R_7032915_7032977;chr3R_7033082_7033203 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 4.65 0.00 NA 9.38 0.00 0.00 0.00 6.90 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 4.76 0.00 3.85 7.69 NA 0.00 0.00 NA NA 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.03 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 3.85 3.51 0.00 K intron_retention C3G chrX - chrX_6681282_6681383 chrX_6681281_6681282;chrX_6681383_6681384 chrX_6681129_6681281;chrX_6681384_6681553 27.31 25.55 19.32 26.74 27.78 21.53 45.35 23.96 24.44 28.21 29.91 27.31 24.56 29.06 25.95 21.39 31.25 22.88 33.33 25.51 33.61 44.44 26.94 30.43 57.02 47.79 27.33 32.14 27.52 21.74 27.78 36.00 27.37 28.02 25.71 59.85 25.60 36.75 23.38 27.75 53.57 26.90 25.60 24.24 24.27 34.56 19.61 34.33 25.69 27.94 25.84 23.47 18.52 19.12 27.10 33.33 22.52 30.89 K alternative_acceptor noncoding_7373,REI_chr2R_12706037_12706094 chr2R - chr2R_12706006_12706094 chr2R_12706037_12706094 chr2R_12706095_12706194;chr2R_12705937_12706005 18.82 NA NA NA NA NA 14.29 16.67 21.43 NA NA 22.73 30.77 36.36 NA NA NA 17.39 NA 35.71 NA NA NA NA NA NA NA NA NA NA 9.09 NA NA NA NA NA NA NA NA 15.79 NA 17.65 NA 20.00 6.67 NA NA NA 35.71 NA 25.00 NA NA NA NA NA NA 4.76 K intron_retention RpL17,I_chrX_6637182_6638207,snoRNA:Psi28S-3436b,snoRNA:Psi28S-3436a,snoRNA:Psi28S-1060,RI_chrX_6637182_6637528,I_chrX_6637182_6637973 chrX - chrX_6636290_6637090 chrX_6636289_6636290;chrX_6637090_6637091 chrX_6636192_6636289;chrX_6637091_6637181 0.05 0.02 0.06 0.05 0.06 0.10 0.14 0.04 0.08 0.06 0.11 0.07 0.09 0.06 0.02 0.05 0.00 0.04 0.09 0.03 0.05 0.06 0.05 0.06 0.03 0.05 0.09 0.41 0.05 0.07 0.07 0.07 0.00 0.08 0.05 0.06 0.04 0.04 0.05 0.05 0.00 0.03 0.03 0.03 0.05 0.05 0.02 0.07 0.12 0.04 0.07 0.04 0.06 0.03 0.05 0.02 0.05 0.08 K jcn_only_AD Fs(2)Ket,I_chr2L_20734991_20735252,I_chr2L_20735091_20735305,I_chr2L_20735170_20735252,I_chr2L_20738976_20749527 chr2L + chr2L_20735170_20735252;chr2L_20734991_20735252 chr2L_20735091_20735252 chr2L_20735253_20735352;chr2L_20734943_20734990 95.84 98.21 97.30 93.41 94.83 98.21 94.17 95.54 94.89 NA 94.87 91.67 92.98 95.95 96.10 96.12 96.30 92.31 93.75 95.15 95.74 97.62 97.56 97.37 100.00 100.00 94.59 90.32 NA 95.24 95.35 NA 97.50 96.99 97.06 100.00 91.30 100.00 92.86 91.94 NA 96.43 95.08 95.65 NA 96.30 95.24 96.43 95.27 90.91 97.14 95.24 100.00 100.00 97.65 100.00 100.00 81.82 K alternative_acceptor CG9855,RI_chr3R_222522_222581,RI_chr3R_222525_222604,I_chr3R_223384_223429 chr3R - chr3R_222528_222581;chr3R_222525_222581 chr3R_222522_222581 chr3R_222582_222650;chr3R_222457_222521 3.45 7.14 13.64 2.44 5.88 0.00 9.38 2.78 2.13 4.17 5.26 2.86 5.88 0.00 6.67 3.70 0.00 0.00 4.35 2.33 5.26 3.92 3.03 3.12 4.55 8.33 0.00 4.76 2.08 3.12 0.00 2.86 2.33 6.45 5.26 3.57 3.12 3.70 2.94 7.14 2.17 0.00 5.00 3.45 4.55 1.96 0.00 6.67 2.17 6.25 0.00 4.35 3.12 3.70 0.00 5.71 0.00 6.41 K intron_retention betaCop chrX - chrX_18276347_18276414 chrX_18276346_18276347;chrX_18276414_18276415 chrX_18276073_18276346;chrX_18276415_18276576 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.54 0.00 0.00 0.00 0.00 0.38 1.15 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.74 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.46 0.00 K intron_retention CG3305,CREI_chr2L_21573959_21574786,E_chr2L_21574285_21574462 chr2L + chr2L_21573562_21574786 chr2L_21573561_21573562;chr2L_21574786_21574787 chr2L_21573425_21573561;chr2L_21574787_21574886 0.20 0.97 0.97 0.81 0.00 1.03 0.83 0.52 0.58 0.00 0.00 0.87 0.44 0.95 0.60 1.09 0.76 0.76 0.68 0.91 1.00 0.00 0.20 0.00 0.00 0.67 0.48 0.00 0.00 0.00 0.54 0.00 1.06 0.45 0.00 0.60 0.00 0.00 0.00 0.74 0.00 0.35 1.44 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 K alternative_acceptor Aats-phe chr2R + chr2R_9857108_9857181 chr2R_9857108_9857176 chr2R_9855852_9857107;chr2R_9857182_9857407 100.00 97.06 96.88 100.00 100.00 95.45 100.00 100.00 98.31 100.00 95.83 97.78 94.12 95.24 100.00 96.97 100.00 100.00 96.43 100.00 95.00 100.00 97.30 100.00 94.44 100.00 100.00 100.00 95.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 98.11 100.00 100.00 100.00 96.88 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 100.00 K alternative_donor I_chr2R_4783150_4783708,Ggamma1,noncoding_5300 chr2R + chr2R_4788937_4789641 chr2R_4789028_4789641 chr2R_4789642_4789782;chr2R_4788908_4788936 100.00 100.00 100.00 90.91 100.00 NA 92.31 100.00 95.45 88.89 90.91 100.00 91.67 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 91.67 100.00 100.00 100.00 93.75 91.67 91.67 100.00 100.00 100.00 85.71 100.00 100.00 NA NA 81.82 100.00 100.00 91.67 K alternative_donor vig chr2L - chr2L_15067690_15067952;chr2L_15067690_15067995;chr2L_15067690_15067868;chr2L_15067690_15068029;chr2L_15067690_15067999 chr2L_15067690_15067915 chr2L_15066937_15067689;chr2L_15068030_15068031 90.00 82.35 95.65 93.10 88.89 82.35 93.10 87.50 89.09 89.47 95.24 87.50 88.89 85.71 95.24 93.55 93.75 87.50 95.83 91.07 95.83 85.29 94.74 86.67 100.00 95.24 88.89 78.38 82.14 93.33 95.45 88.24 80.00 94.44 100.00 88.89 83.33 84.62 90.91 80.00 78.95 92.31 94.12 90.00 83.33 85.19 90.00 81.40 95.56 100.00 93.33 76.92 100.00 100.00 92.31 90.00 92.31 83.72 K intron_retention lva,CG6428 chrX - chrX_3858985_3859304 chrX_3858984_3858985;chrX_3859304_3859305 chrX_3858734_3858984;chrX_3859305_3859357 79.31 88.89 91.67 76.19 NA 62.50 77.78 84.00 76.00 NA 80.00 95.00 77.78 91.67 63.64 86.67 66.67 90.91 76.47 92.86 63.64 100.00 66.67 NA 88.89 91.67 90.91 70.00 100.00 NA 72.00 NA 100.00 75.00 87.50 100.00 80.00 NA NA 64.29 NA 70.83 NA 72.73 NA NA NA 89.47 79.31 NA 77.78 66.67 NA NA 78.26 NA NA NA K intron_retention CG14273 chr2L + chr2L_8343842_8344071 chr2L_8343841_8343842;chr2L_8344071_8344072 chr2L_8343383_8343841;chr2L_8344072_8344939 4.26 4.55 5.96 15.83 4.26 4.65 5.19 7.45 4.71 7.89 5.10 3.16 5.88 5.98 4.96 4.52 8.33 6.49 7.00 3.42 2.88 1.49 5.62 5.10 3.30 3.09 6.47 11.95 2.70 2.24 5.52 3.27 1.79 5.76 4.12 3.17 4.48 4.76 1.09 3.79 2.18 2.71 4.90 2.82 3.23 2.52 3.50 3.49 3.43 3.11 4.69 4.29 2.85 3.91 3.14 4.46 3.02 2.69 K intron_retention RI_chr2R_13458667_13458738,Rab4,I_chr2R_13461027_13461136 chr2R + chr2R_13461027_13461125 chr2R_13461026_13461027;chr2R_13461125_13461126 chr2R_13461020_13461026;chr2R_13461126_13461179 92.86 100.00 97.30 96.61 91.89 80.65 91.18 94.59 89.41 90.00 90.32 89.39 88.89 95.24 92.86 90.62 81.08 96.67 87.76 92.39 90.91 98.08 97.37 90.91 100.00 93.33 96.43 95.24 95.24 95.45 90.48 88.89 83.33 91.30 92.31 96.30 91.89 87.50 86.67 93.88 100.00 89.06 92.86 100.00 95.83 89.66 96.30 92.86 90.54 94.59 93.10 92.86 96.30 94.44 88.46 96.30 92.50 96.15 K jcn_only_AA CG17233,RI_chr3L_20232898_20232962 chr3L - chr3L_20228778_20229533 chr3L_20229429_20229533 chr3L_20229534_20231010;chr3L_20228602_20228777 33.69 12.50 NA 46.67 NA 14.29 NA NA 12.77 NA 20.00 11.11 NA NA 18.75 NA NA 16.67 12.50 15.87 NA NA 27.08 22.58 NA NA 9.09 25.81 38.10 35.29 NA 65.00 65.22 25.00 NA 34.48 17.07 31.03 34.04 40.00 NA 32.00 NA 33.33 50.00 34.38 42.42 54.29 35.56 39.13 28.12 40.00 46.67 44.44 33.33 43.75 52.00 47.50 K alternative_donor vig chr2L - chr2L_15067690_15067915;chr2L_15067690_15067952;chr2L_15067690_15067868;chr2L_15067690_15068029;chr2L_15067690_15067999 chr2L_15067690_15067995 chr2L_15066937_15067689;chr2L_15068030_15068031 6.25 11.76 4.35 3.45 5.56 11.76 3.45 3.12 7.27 5.26 0.00 7.50 5.56 9.52 4.76 3.23 6.25 6.25 4.17 5.36 0.00 11.76 5.26 13.33 0.00 4.76 11.11 16.22 7.14 6.67 4.55 0.00 10.00 2.78 0.00 0.00 11.11 7.69 9.09 10.00 15.79 5.13 0.00 6.67 11.11 14.81 10.00 13.95 2.22 0.00 6.67 15.38 0.00 0.00 3.85 10.00 7.69 11.63 K intron_retention CG9663,I_chr2L_3296691_3296743 chr2L - chr2L_3296486_3296543 chr2L_3296485_3296486;chr2L_3296543_3296544 chr2L_3295994_3296485;chr2L_3296544_3296690 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.11 3.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD alph,I_chr3R_25417890_25422962 chr3R + chr3R_25417890_25418993 chr3R_25417944_25418993 chr3R_25418994_25419629;chr3R_25417790_25417889 1.34 0.72 1.12 1.27 1.34 0.00 0.85 0.76 2.12 0.00 3.52 0.34 2.05 1.40 2.16 0.88 0.55 2.50 2.65 0.98 2.21 2.86 0.00 1.90 4.11 2.40 1.05 1.16 7.46 0.86 0.50 3.28 2.69 0.00 1.08 2.15 0.76 4.95 1.63 2.34 0.81 1.52 0.76 1.32 5.74 1.38 4.82 1.40 2.12 5.06 1.67 1.19 0.00 0.00 0.00 2.56 1.15 0.00 K intron_retention CG18170,CG33230,ABCB7 chr3L + chr3L_1621258_1621316 chr3L_1621257_1621258;chr3L_1621316_1621317 chr3L_1621103_1621257;chr3L_1621317_1622665 3.12 4.76 2.63 15.71 6.56 0.00 4.12 6.06 2.60 0.00 5.71 2.56 0.00 3.85 0.00 0.00 2.00 0.00 2.17 4.32 3.45 11.29 5.36 4.95 13.24 9.52 4.32 6.19 5.63 0.00 8.20 0.00 0.00 1.20 0.00 12.66 2.34 0.00 0.87 0.76 12.24 4.03 2.50 3.12 0.00 3.85 3.39 1.72 3.60 4.60 2.99 7.41 2.60 3.33 3.17 0.00 0.00 0.00 K intron_retention CG12945,I_chr3R_5615604_5615859,I_chr3R_5615807_5615858,RI_chr3R_5616467_5616560 chr3R - chr3R_5616183_5616247 chr3R_5616182_5616183;chr3R_5616247_5616248 chr3R_5616042_5616182;chr3R_5616248_5616418 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 1.92 0.00 0.00 0.00 0.00 6.67 7.32 5.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 K alternative_last_exon CG33232,I_chr3L_2484838_2495010,CG1146,noncoding_10153 chr3L + chr3L_2489010_2490979 chr3L_2489010_2489122 chr3L_2490980_2492659 chr3L_2489123_2489442 chr3L_2488983_2489009 10.34 10.00 13.64 12.86 10.00 10.64 18.18 18.18 20.24 9.43 13.64 11.43 13.64 18.92 10.17 17.54 18.42 10.81 14.00 10.34 11.11 8.57 8.43 13.56 11.43 10.34 8.20 12.96 4.76 6.67 10.71 4.94 5.98 15.29 8.89 16.22 4.88 10.34 4.55 6.50 2.41 7.69 12.12 8.75 3.17 4.44 15.38 5.66 12.87 7.69 13.79 21.88 6.82 10.71 13.73 8.70 7.79 1.69 K intron_retention Indy chr3L - chr3L_18824528_18824594 chr3L_18824527_18824528;chr3L_18824594_18824595 chr3L_18824411_18824527;chr3L_18824595_18824721 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette I_chr2L_8029734_8029787,Cka,CG7429 chr2L + chr2L_8036577_8037089 chr2L_8036577_8036836;chr2L_8036894_8037089 chr2L_8036837_8036893 chr2L_8036382_8036576;chr2L_8037090_8038517 0.40 0.00 0.00 1.20 0.86 0.00 0.00 0.58 0.32 0.87 0.00 0.81 1.83 0.00 0.63 0.00 0.00 0.90 0.87 0.35 0.00 1.41 0.39 0.53 0.00 0.82 0.56 0.74 0.75 0.67 0.00 1.15 1.05 0.00 0.90 0.67 0.00 0.65 0.40 0.00 1.06 0.00 0.00 0.78 0.88 0.00 0.00 0.90 0.49 0.00 0.00 1.06 0.00 0.00 0.00 0.86 0.00 0.00 K alternative_acceptor Axs,RI_chrX_16575605_16575790,RI_chrX_16575870_16575942 chrX - chrX_16575605_16575942 chrX_16575870_16575942 chrX_16575943_16576042;chrX_16575505_16575604 0.00 0.00 0.00 7.14 0.00 0.00 2.56 0.00 0.00 NA 0.00 0.00 11.11 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 NA 0.00 5.56 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 4.76 3.85 0.00 0.00 0.00 0.00 0.00 NA 3.23 0.00 4.35 0.00 NA 5.13 0.00 0.00 5.88 0.00 6.67 0.00 0.00 5.26 NA K cassette CG5174,F_chr2R_14309059_14311473,CE_chr2R_14309063_14311473 chr2R + chr2R_14309059_14311631 chr2R_14309059_14311473;chr2R_14311513_14311631 chr2R_14311474_14311512 chr2R_14308963_14309058;chr2R_14311632_14311756 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG31301,I_chr3R_11172776_11172930,RI_chr3R_11173123_11173185 chr3R + chr3R_11173128_11173198 chr3R_11173128_11173185 chr3R_11173059_11173127;chr3R_11173199_11173254 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor Pka-R2,I_chr2R_5911755_5913333,I_chr2R_5911755_5913354,I_chr2R_5911803_5913333 chr2R - chr2R_5911803_5913354 chr2R_5911803_5913333 chr2R_5911703_5911802;chr2R_5913355_5913433 41.67 NA 35.71 41.67 NA NA NA 38.89 41.67 NA NA 26.32 NA 44.44 45.45 50.00 36.36 45.45 25.00 55.00 25.00 NA 36.36 NA NA 66.67 NA NA NA NA 40.00 NA NA 50.00 NA NA NA NA NA 36.36 NA 50.00 55.56 NA NA NA NA NA 40.00 NA 36.36 NA NA NA 52.94 NA NA NA K alternative_donor CG7611,I_chr3L_21516702_21517821 chr3L + chr3L_21516706_21517821;chr3L_21516330_21517821;chr3L_21516399_21517821;chr3L_21517168_21517821;chr3L_21516501_21517821;chr3L_21516918_21517821;chr3L_21516343_21517821;chr3L_21516728_21517821 chr3L_21516722_21517821 chr3L_21517822_21517920;chr3L_21516311_21516329 0.00 0.00 9.09 0.00 0.00 0.00 4.35 4.55 10.00 0.00 14.29 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 12.50 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor RpL9,I_chr2L_11003236_11003510 chr2L - chr2L_11003236_11003510 chr2L_11003239_11003510 chr2L_11003511_11003610;chr2L_11003136_11003235 100.00 99.98 100.00 100.00 100.00 100.00 99.98 100.00 99.99 100.00 100.00 99.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.98 100.00 100.00 100.00 99.98 100.00 100.00 99.98 99.97 99.97 99.96 99.96 99.96 100.00 100.00 100.00 100.00 99.98 100.00 99.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.95 99.97 100.00 99.98 100.00 100.00 100.00 100.00 99.98 100.00 99.97 K alternative_donor ben chrX + chrX_13890789_13892127;chrX_13890791_13892127;chrX_13890793_13892127;chrX_13890762_13892127;chrX_13890795_13892127;chrX_13890990_13892127;chrX_13890831_13892127;chrX_13890768_13892127;chrX_13890648_13892127 chrX_13891016_13892127 chrX_13892128_13892800;chrX_13890644_13890647 0.00 NA NA 16.67 NA NA 0.00 50.00 20.00 NA NA 50.00 0.00 0.00 0.00 20.00 NA NA 100.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA 0.00 33.33 NA NA NA NA NA 50.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 16.67 0.00 NA NA NA NA 25.00 NA 0.00 0.00 K alternative_donor ras chrX + chrX_10638695_10638811 chrX_10638741_10638811 chrX_10638812_10638943;chrX_10638539_10638694 100.00 100.00 85.71 100.00 NA 88.89 100.00 93.75 95.24 100.00 NA 100.00 90.91 90.00 100.00 94.12 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 91.67 91.67 100.00 92.31 NA 88.89 100.00 90.91 88.89 100.00 91.67 100.00 100.00 92.31 100.00 100.00 93.75 NA 90.91 NA 100.00 94.44 90.91 100.00 100.00 NA NA 100.00 NA NA 100.00 K alternative_acceptor CG17002 chr2R + chr2R_2875194_2875291 chr2R_2875194_2875285 chr2R_2875175_2875193;chr2R_2875292_2875770 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 93.75 NA NA NA NA NA NA 100.00 NA NA NA 91.67 NA NA NA NA NA 100.00 100.00 NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA K jcn_only_AD NaCP60E,I_chr2R_20805053_20805170 chr2R + chr2R_20805101_20805170;chr2R_20805053_20805170 chr2R_20805005_20805170 chr2R_20805171_20805270;chr2R_20804953_20805004 0.00 NA NA NA NA NA NA NA 7.14 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA K alternative_donor Edem1,I_chrX_1798310_1798525,I_chrX_1798315_1798577 chrX - chrX_1798315_1798577 chrX_1798315_1798525 chrX_1798215_1798314;chrX_1798578_1798625 96.67 91.43 100.00 100.00 96.30 96.15 97.67 97.78 94.03 95.24 100.00 98.31 96.43 96.00 97.22 97.22 96.43 96.97 96.88 97.01 96.55 94.74 92.16 95.35 91.67 100.00 89.29 95.24 90.62 96.67 97.87 88.57 92.86 97.78 95.24 96.88 97.92 100.00 97.37 98.41 96.77 98.39 92.86 97.78 94.87 98.18 98.21 98.08 100.00 92.45 94.87 96.55 94.74 97.56 97.62 90.70 93.48 92.86 K jcn_only_AA Rm62,RI_chr3R_1834029_1834277 chr3R - chr3R_1834029_1834272 chr3R_1834032_1834272 chr3R_1834273_1834276;chr3R_1833929_1834028 7.49 NA NA 8.57 NA NA NA 12.50 3.85 6.67 NA NA NA NA 5.00 3.03 NA NA NA 9.09 NA NA NA NA NA NA NA 8.61 1.56 4.00 4.55 8.00 12.16 9.76 10.00 8.82 NA NA NA 8.76 6.98 6.98 NA 10.05 2.90 3.92 NA 10.83 12.20 NA NA NA 3.80 NA NA NA NA 4.44 K alternative_donor CG10277,I_chr3R_2208983_2210253,I_chr3R_2211939_2212057 chr3R + chr3R_2209240_2210702;chr3R_2208983_2210702 chr3R_2209244_2210702 chr3R_2210703_2210980;chr3R_2208883_2208982 1.28 3.33 1.33 0.67 2.50 0.00 0.78 1.18 1.66 0.00 3.12 1.38 1.49 4.29 2.63 0.82 4.35 3.85 1.28 1.56 1.54 0.63 2.33 0.00 1.61 2.41 0.00 5.88 2.21 0.87 3.06 0.00 1.27 1.98 1.00 0.84 0.65 14.29 0.66 1.17 0.00 2.40 1.67 1.01 1.06 0.75 1.49 0.61 1.57 0.00 2.78 2.33 0.00 0.00 2.56 0.00 0.00 0.00 K alternative_donor CG4699 chr3R + chr3R_11624200_11624442;chr3R_11624190_11624442;chr3R_11624127_11624442 chr3R_11624133_11624442 chr3R_11624443_11624758;chr3R_11623809_11624126 10.84 9.26 14.81 17.58 24.53 18.75 7.69 13.41 15.74 5.56 12.50 13.83 11.90 16.00 15.49 9.80 12.00 7.50 15.79 10.74 23.26 9.29 5.94 4.94 5.66 10.20 12.94 10.71 15.89 11.11 14.29 7.69 16.94 10.84 12.35 7.79 10.28 8.57 7.83 2.01 6.82 11.97 9.30 7.41 16.52 13.19 5.56 13.07 12.84 12.50 6.58 4.17 9.09 8.00 17.54 4.76 4.26 15.04 K intron_retention cmet chr2L - chr2L_11262752_11262818 chr2L_11262751_11262752;chr2L_11262818_11262819 chr2L_11262617_11262751;chr2L_11262819_11266557 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor fry,I_chr3L_9636648_9656042 chr3L - chr3L_9625271_9625332 chr3L_9625274_9625332 chr3L_9625333_9625699;chr3L_9624985_9625270 42.86 42.86 39.39 43.86 47.37 47.62 32.65 44.44 37.10 38.10 55.00 36.36 39.13 50.00 34.21 34.21 44.00 57.69 42.11 48.33 41.18 37.04 45.16 36.36 43.75 46.43 39.29 46.15 40.00 41.86 47.06 40.00 39.02 53.49 47.37 41.67 59.26 53.33 33.33 43.75 32.65 43.28 36.67 41.38 46.51 45.90 42.86 44.90 37.70 41.67 51.11 40.91 50.00 47.83 50.00 43.59 40.98 41.82 K jcn_only_AA I_chrX_5796578_5796722,CG4020,CG3726 chrX + chrX_5835305_5835381 chrX_5835305_5835358 chrX_5835198_5835304;chrX_5835382_5835509 10.00 NA NA 25.64 NA NA NA NA NA NA NA NA NA NA NA NA NA 17.86 NA NA NA NA 13.04 NA NA NA NA NA NA NA NA NA NA 13.64 NA NA 9.52 4.76 NA NA NA NA NA 15.56 NA NA 5.00 NA NA 10.00 9.09 NA NA NA NA 6.06 NA NA K intron_retention CG3004 chrX - chrX_9499739_9499794 chrX_9499738_9499739;chrX_9499794_9499795 chrX_9498140_9499738;chrX_9499795_9500104 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 3.17 0.00 1.18 2.17 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 K jcn_only_AD CG40485 chrX - chrX_22363297_22363599 chrX_22363297_22363595 chrX_22363005_22363296;chrX_22363600_22364196 5.00 8.33 3.12 NA NA 0.00 0.00 9.52 9.38 NA 0.00 2.50 NA NA 8.33 7.14 NA 5.88 7.14 2.08 NA 9.38 2.78 7.89 NA 9.09 0.00 5.00 16.00 3.12 7.32 0.00 7.84 5.00 0.00 NA 1.85 2.08 3.70 1.79 0.00 16.67 NA 6.38 2.86 0.00 6.25 11.11 2.38 12.50 7.14 6.25 2.38 0.00 6.06 8.00 4.92 15.00 K intron_retention msk,I_chr3L_8109906_8110404,E_chr3L_8113475_8114438 chr3L + chr3L_8113323_8113377 chr3L_8113322_8113323;chr3L_8113377_8113378 chr3L_8113012_8113322;chr3L_8113378_8113474 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG40178,I_chr3LHet_1194286_1226423,I_chr3LHet_1281030_1306994,RI_chr3LHet_1390877_1390952 chr3LHet - chr3LHet_1344240_1360665 chr3LHet_1352327_1360665 chr3LHet_1360666_1360681 93.50 NA NA 71.88 NA NA 71.43 89.74 85.71 NA NA NA NA 92.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 96.43 NA NA 100.00 NA NA NA NA NA NA NA 95.00 NA NA NA NA NA NA 96.30 NA NA NA NA NA NA NA NA NA K intron_retention MED15 chr2L + chr2L_475179_475232 chr2L_475178_475179;chr2L_475232_475233 chr2L_475036_475178;chr2L_475233_475851 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 K cassette RI_chrX_8468338_8469380,I_chrX_8468338_8477573,CG12065,I_chrX_8469524_8477579,CE_chrX_8469528_8477573 chrX + chrX_8468441_8477573 chrX_8468441_8469386;chrX_8469524_8477573 chrX_8469387_8469523 chrX_8468351_8468440;chrX_8477574_8477673 88.77 87.28 93.40 94.51 93.92 90.50 95.26 95.29 94.31 82.61 96.76 91.99 82.95 88.89 93.46 93.20 92.78 88.48 97.10 91.01 94.92 72.60 82.86 86.14 84.82 94.41 88.77 87.29 64.50 87.10 92.23 87.02 89.47 94.60 84.51 94.87 87.56 83.67 78.07 83.90 91.18 94.20 93.79 86.49 90.62 87.38 80.10 89.70 92.91 85.71 83.94 81.74 82.22 80.95 90.00 86.11 85.78 86.92 K intron_retention ps,I_chr3R_5243723_5265067,I_chr3R_5243723_5270765,I_chr3R_5245770_5265067,I_chr3R_5245770_5269732,I_chr3R_5258562_5264836,I_chr3R_5262841_5265067,RI_chr3R_5262841_5266402,I_chr3R_5265428_5266402,I_chr3R_5265428_5269732,I_chr3R_5265428_5270765,CG16777,I_chr3R_5269733_5270765 chr3R + chr3R_5258562_5269732 chr3R_5258561_5258562;chr3R_5269732_5269733 chr3R_5258462_5258561;chr3R_5269733_5269798 0.00 0.00 0.00 0.00 0.00 2.86 3.45 0.00 0.00 0.00 0.00 0.00 2.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 3.41 0.00 0.00 0.00 0.00 1.64 14.29 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA K alternative_donor ben chrX + chrX_13890789_13892127;chrX_13890791_13892127;chrX_13891016_13892127;chrX_13890793_13892127;chrX_13890762_13892127;chrX_13890795_13892127;chrX_13890990_13892127;chrX_13890768_13892127;chrX_13890648_13892127 chrX_13890831_13892127 chrX_13892128_13892800;chrX_13890644_13890647 0.00 NA NA 16.67 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA 33.33 0.00 NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 33.33 0.00 NA NA NA NA 0.00 NA 0.00 0.00 N multi_cassette Pvr,I_chr2L_8226604_8228082,I_chr2L_8229001_8230124,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8226607_8230124 chr2L_8226607_8228082;chr2L_8228258_8228493;chr2L_8229012_8230124 chr2L_8228083_8228257;chr2L_8228494_8229011 chr2L_8226458_8226606;chr2L_8230125_8230224 100.00 100.00 100.00 94.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083458_8089184;chr2L_8083522_8089184;chr2L_8083588_8089184;chr2L_8083687_8089184 chr2L_8083637_8089184 chr2L_8089185_8089284;chr2L_8083444_8083457 13.45 NA 21.15 8.33 NA 16.67 13.25 13.64 11.96 45.00 NA 10.00 10.64 14.29 19.35 8.33 14.29 12.12 11.86 9.09 NA 6.67 7.69 NA NA 6.67 NA NA 25.81 NA 8.89 NA 33.33 9.21 NA 25.00 NA NA NA 30.30 13.16 14.81 20.00 22.73 NA 22.58 NA 21.13 12.66 NA NA NA NA NA 10.42 NA NA 24.44 K alternative_donor eIF4E-6,RI_chr3R_24852741_24852800,I_chr3R_24852751_24852800 chr3R - chr3R_24852751_24852809 chr3R_24852751_24852800 chr3R_24852651_24852750;chr3R_24852810_24852896 27.92 NA NA NA NA NA NA 16.67 27.27 NA NA NA NA NA NA 36.36 NA NA NA 28.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor REFI_chr2R_10491644_10491701,CG12868 chr2R - chr2R_10492608_10492671 chr2R_10492611_10492671 chr2R_10492672_10492842;chr2R_10491973_10492607 100.00 NA NA NA NA NA 94.44 100.00 100.00 NA NA 100.00 NA NA NA 93.33 NA NA NA NA NA 100.00 100.00 NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA NA 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA NA NA NA NA NA NA N jcn_only_AA CG32138 chr3L + chr3L_14058259_14058688;chr3L_14058259_14059498 chr3L_14058259_14058715 chr3L_14058172_14058258;chr3L_14059499_14060368 94.39 96.58 98.48 93.56 96.76 95.58 96.54 94.03 93.76 94.39 98.43 94.93 90.60 96.50 97.89 95.09 96.00 97.08 94.47 97.19 95.06 74.79 92.31 94.35 92.13 94.35 89.41 88.89 88.89 91.73 95.36 94.87 90.76 97.05 92.04 80.35 92.08 92.23 92.07 93.45 94.39 95.14 95.10 94.95 93.33 93.87 91.98 94.40 97.38 86.93 92.40 89.59 98.82 96.40 95.97 90.12 96.24 96.34 K cassette how chr3R + chr3R_17897764_17903005 chr3R_17897764_17900173;chr3R_17900667_17903005 chr3R_17900174_17900666 chr3R_17897461_17897763;chr3R_17903006_17903074 100.00 100.00 100.00 98.44 100.00 97.14 100.00 98.55 98.90 96.00 96.00 98.65 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 97.96 100.00 100.00 96.30 100.00 100.00 100.00 86.96 100.00 100.00 94.44 100.00 100.00 96.55 97.14 97.67 100.00 97.14 98.41 95.00 100.00 100.00 100.00 95.24 100.00 96.88 100.00 98.55 97.44 100.00 100.00 100.00 100.00 97.83 100.00 100.00 97.30 K alternative_acceptor CG1427,RI_chr3R_1427548_1427635 chr3R + chr3R_1427585_1427681 chr3R_1427585_1427635 chr3R_1427482_1427584;chr3R_1427682_1427704 96.67 100.00 92.86 100.00 100.00 100.00 92.86 100.00 96.55 100.00 100.00 93.10 88.89 100.00 87.50 93.75 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 93.75 93.33 100.00 100.00 100.00 92.31 95.65 100.00 100.00 95.00 100.00 92.31 95.00 95.00 96.00 97.50 90.00 96.88 92.31 100.00 95.65 90.91 100.00 94.12 96.67 94.12 95.00 100.00 100.00 100.00 90.00 94.74 95.00 95.65 K intron_retention CG18317,RI_chr2L_1718492_1723881,I_chr2L_1718904_1718995,RI_chr2L_1718904_1724234 chr2L - chr2L_1718492_1718674 chr2L_1718491_1718492;chr2L_1718674_1718675 chr2L_1718421_1718491;chr2L_1718675_1718903 0.00 6.25 3.85 0.00 0.00 0.00 2.38 4.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 3.03 0.00 6.06 6.25 0.00 0.00 9.09 8.51 13.16 3.64 6.67 0.00 0.00 4.17 2.22 0.00 7.14 3.85 3.45 3.17 9.68 0.00 3.57 0.00 2.27 0.00 4.17 2.50 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 9.52 3.45 0.00 K intron_retention CG9911 chrX - chrX_16190518_16190892 chrX_16190517_16190518;chrX_16190892_16190893 chrX_16190343_16190517;chrX_16190893_16190916 100.00 97.83 100.00 100.00 98.18 100.00 100.00 99.02 99.26 100.00 98.44 100.00 100.00 100.00 100.00 100.00 98.39 100.00 100.00 99.19 100.00 100.00 97.37 100.00 100.00 98.39 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 98.06 100.00 97.92 100.00 100.00 100.00 97.14 99.14 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG14299 chr3R - chr3R_14580934_14581062 chr3R_14580999_14581062 chr3R_14581063_14581206;chr3R_14580821_14580933 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 95.65 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA 100.00 K intron_retention sxc,I_chr2R_1203985_1205289,I_chr2R_1208121_1213310,I_chr2R_1213177_1213308 chr2R + chr2R_1194858_1194977 chr2R_1194857_1194858;chr2R_1194977_1194978 chr2R_1194848_1194857;chr2R_1194978_1195157 100.00 100.00 94.74 100.00 100.00 100.00 100.00 97.67 97.37 100.00 92.31 100.00 95.00 100.00 100.00 98.21 100.00 90.91 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 NA 100.00 97.73 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 93.75 100.00 NA NA 100.00 100.00 97.92 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 K jcn_only_AD Dad,I_chr3R_12893363_12894192,I_chr3R_12898717_12898778 chr3R + chr3R_12880085_12880773 chr3R_12880112_12880773 chr3R_12880774_12880896;chr3R_12879745_12880084 11.82 NA NA NA NA NA NA NA 13.64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention PNGase,I_chr2R_1906759_1906817,I_chr2R_1906899_1906977 chr2R + chr2R_1905861_1905911 chr2R_1905860_1905861;chr2R_1905911_1905912 chr2R_1905769_1905860;chr2R_1905912_1906758 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16106466_16106995 chr3L_16106465_16106466;chr3L_16106995_16106996 chr3L_16106332_16106465;chr3L_16106996_16107241 60.00 50.00 60.00 66.67 68.42 61.11 62.96 57.58 54.72 73.08 35.71 50.00 61.11 57.14 66.67 51.43 58.82 68.75 56.25 60.00 45.45 87.88 66.67 61.11 46.15 39.13 64.52 76.19 56.52 66.67 63.64 46.15 54.05 55.56 80.00 66.67 59.26 50.00 40.00 52.17 69.23 53.49 53.33 55.88 46.67 60.00 60.00 55.26 66.67 55.00 47.06 62.07 61.11 53.33 65.00 65.00 64.29 68.00 K intron_retention Nipsnap,RI_chrX_15965934_15967435 chrX - chrX_15967175_15967435 chrX_15967174_15967175;chrX_15967435_15967436 chrX_15967060_15967174;chrX_15967436_15967464 10.53 NA NA 0.00 NA NA 20.00 10.53 5.71 NA NA 8.33 11.11 17.65 NA 5.56 NA 46.15 8.33 15.38 NA 0.00 30.77 NA NA NA NA NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA 27.78 NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA 26.67 K cassette Vha100-1,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24956994_24957847 chr3R_24956994_24957407;chr3R_24957548_24957847 chr3R_24957408_24957547 chr3R_24956989_24956993;chr3R_24957848_24958024 100.00 100.00 100.00 98.92 100.00 100.00 98.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.37 100.00 100.00 98.48 100.00 100.00 100.00 100.00 100.00 98.00 100.00 99.15 100.00 100.00 100.00 100.00 100.00 100.00 98.68 99.40 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.28 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Utx chr2L - chr2L_10274106_10274164 chr2L_10274105_10274106;chr2L_10274164_10274165 chr2L_10273966_10274105;chr2L_10274165_10274868 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 10.00 NA NA NA 5.88 NA NA 0.00 30.77 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 NA NA NA K intron_retention robo chr2R - chr2R_18586590_18586700 chr2R_18586589_18586590;chr2R_18586700_18586701 chr2R_18586471_18586589;chr2R_18586701_18586881 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.05 0.00 0.00 0.00 0.00 0.00 17.65 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K alternative_donor l(2)s5379,I_chr2L_2227282_2227349,RI_chr2L_2228057_2229265,I_chr2L_2229012_2229265,I_chr2L_2229179_2229265 chr2L + chr2L_2228057_2229265;chr2L_2229012_2229265 chr2L_2227282_2229265 chr2L_2229266_2229365;chr2L_2227182_2227281 98.96 99.17 98.73 99.30 99.10 98.35 97.48 98.99 96.98 98.92 98.17 98.74 98.29 98.08 98.92 98.45 99.14 97.74 98.84 97.81 99.13 99.27 99.21 99.01 98.33 98.96 98.00 94.12 98.90 99.34 99.41 99.47 99.61 98.19 98.86 99.24 98.95 98.77 99.15 99.37 99.54 99.24 99.12 99.26 99.51 99.36 99.12 99.75 98.97 97.78 98.26 98.04 99.04 99.02 98.90 98.96 98.29 99.77 K intron_retention CG5840 chr3R + chr3R_13362421_13362492 chr3R_13362420_13362421;chr3R_13362492_13362493 chr3R_13361755_13362420;chr3R_13362493_13362636 10.53 0.00 8.33 10.53 NA 0.00 17.65 0.00 5.00 25.00 NA 17.24 12.50 0.00 3.85 40.00 6.67 4.00 NA 8.62 NA 11.43 18.33 8.00 12.50 0.00 12.00 29.79 24.32 8.33 14.29 15.15 11.76 7.41 14.81 12.00 8.33 13.79 15.79 8.93 16.13 7.89 11.76 9.68 11.54 7.69 9.09 5.56 11.76 18.42 12.07 3.33 7.89 7.50 0.00 9.52 17.07 17.24 K alternative_last_exon SelR,I_chr3R_6691367_6692250,I_chr3R_6692461_6692530,I_chr3R_6694098_6694160 chr3R - chr3R_6689548_6692250,chr3R_6689581_6692250 chr3R_6691349_6692250,chr3R_6691370_6692250 chr3R_6688210_6689547 chr3R_6690144_6691348 chr3R_6692251_6692350 5.56 5.88 8.70 9.68 5.56 5.00 14.81 9.38 7.84 5.26 9.09 9.30 12.50 5.56 7.14 9.38 5.00 4.55 8.33 11.76 6.67 4.55 7.69 5.13 5.00 5.26 5.26 5.00 10.53 4.17 3.70 5.56 3.33 11.43 8.70 12.50 2.17 3.23 2.17 2.50 5.00 6.12 10.53 4.76 3.33 4.88 3.23 8.00 6.38 4.17 5.71 5.88 6.67 2.94 7.69 2.63 4.48 6.98 K intron_retention MED1 chr3L - chr3L_21627297_21627361 chr3L_21627296_21627297;chr3L_21627361_21627362 chr3L_21626016_21627296;chr3L_21627362_21627549 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 16.67 19.05 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K alternative_acceptor I_chr2L_10264634_10264770,Mob3,RI_chr2L_10265562_10265628 chr2L + chr2L_10265562_10265628 chr2L_10265562_10265620 chr2L_10265462_10265561;chr2L_10265629_10265728 100.00 NA 100.00 100.00 NA 91.67 92.59 100.00 95.45 NA NA 100.00 100.00 100.00 100.00 96.30 100.00 100.00 94.12 100.00 90.91 NA 87.50 NA 87.50 94.12 88.89 NA NA NA 90.91 NA NA 100.00 NA 100.00 NA NA 100.00 100.00 NA 94.74 100.00 NA NA 87.50 100.00 NA 94.44 100.00 100.00 NA NA NA 100.00 100.00 100.00 NA K intron_retention pita,Rrp4 chr2R - chr2R_19437415_19437470 chr2R_19437414_19437415;chr2R_19437470_19437471 chr2R_19436480_19437414;chr2R_19437471_19438559 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 2.27 2.38 0.00 3.64 1.89 0.00 0.00 0.00 0.85 0.00 1.82 0.00 0.00 0.00 1.54 2.94 5.56 3.57 0.00 0.00 0.00 2.86 3.70 3.77 1.96 0.00 0.00 3.70 2.26 0.00 2.04 0.00 0.00 0.00 0.00 0.00 1.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 K alternative_acceptor CG34213,RI_chr2R_19854960_19855038 chr2R - chr2R_19854960_19855038 chr2R_19854986_19855038 chr2R_19855039_19855104;chr2R_19854905_19854959 90.84 NA 87.50 90.00 NA NA 91.67 100.00 100.00 NA NA NA NA NA NA NA NA NA 87.50 90.00 NA NA NA NA NA NA NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA NA 91.67 NA NA NA 100.00 NA 88.89 90.00 NA NA NA NA NA 87.50 NA NA 75.00 K intron_retention Ca-P60A,I_chr2R_19817636_19817680,I_chr2R_19820338_19823289 chr2R - chr2R_19819853_19819928 chr2R_19819852_19819853;chr2R_19819928_19819929 chr2R_19817681_19819852;chr2R_19819929_19820011 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG13384 chr2L + chr2L_8384896_8385002 chr2L_8384895_8384896;chr2L_8385002_8385003 chr2L_8384754_8384895;chr2L_8385003_8385091 73.70 87.50 61.11 68.42 80.95 62.50 63.89 81.08 80.49 63.64 84.62 75.68 64.29 69.57 76.47 85.37 63.16 76.19 76.00 79.17 73.33 60.00 74.07 90.91 78.57 69.23 70.73 54.17 90.00 64.29 57.14 71.43 92.31 66.67 61.11 66.67 78.26 56.25 77.78 77.27 60.00 66.67 78.57 66.67 75.00 70.00 75.00 68.00 77.78 90.91 79.17 58.33 NA 84.62 60.87 84.21 61.29 81.25 K jcn_only_AD CG8289 chrX - chrX_17528387_17528606 chrX_17528387_17528575 chrX_17527710_17528386;chrX_17528607_17529007 1.34 0.00 0.00 1.23 4.00 6.52 1.54 0.00 0.00 0.00 0.00 3.77 4.76 2.17 1.92 3.85 0.00 3.03 0.00 0.00 7.14 NA 0.00 1.41 2.44 0.00 0.00 0.00 3.70 3.57 1.75 3.70 0.00 1.61 0.00 0.00 0.00 1.61 1.64 0.00 0.00 0.00 0.00 0.00 5.41 7.14 2.70 0.00 0.00 1.27 1.89 3.51 0.00 2.38 2.13 3.23 0.00 3.45 K intron_retention del chr2L - chr2L_21148137_21148200 chr2L_21148136_21148137;chr2L_21148200_21148201 chr2L_21147904_21148136;chr2L_21148201_21148373 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention Ppn,F_chr3R_24347009_24347078 chr3R - chr3R_24351310_24351592 chr3R_24351309_24351310;chr3R_24351592_24351593 chr3R_24351139_24351309;chr3R_24351593_24351772 5.71 4.76 5.88 10.11 4.00 3.57 13.21 7.53 8.24 5.56 12.00 5.88 5.00 8.11 2.00 6.25 0.00 9.52 8.11 6.61 0.00 0.00 7.89 8.33 3.45 5.71 0.00 NA NA 0.00 5.26 NA 14.29 12.24 NA 0.00 3.12 0.00 5.71 3.64 0.00 7.14 0.00 0.00 NA 7.41 0.00 12.50 6.48 NA 2.94 0.00 0.00 6.67 9.09 13.33 0.00 9.09 K intron_retention CG30492,C_chr2R_3522706_3523025,CG30494,RI_chr2R_3536203_3536977,I_chr2R_3543397_3543455 chr2R + chr2R_3528123_3535801 chr2R_3528122_3528123;chr2R_3535801_3535802 chr2R_3527622_3528122;chr2R_3535802_3535913 3.70 0.00 6.25 10.00 5.41 7.41 11.11 5.56 9.33 0.00 23.53 13.79 11.54 9.09 8.00 2.63 2.94 4.88 0.00 13.56 8.33 2.22 9.09 3.45 0.00 0.00 3.23 NA 16.67 0.00 3.70 0.00 16.67 14.29 0.00 13.33 0.00 4.76 12.50 6.06 0.00 7.14 2.70 0.00 0.00 3.12 0.00 6.25 8.00 3.70 7.69 NA 0.00 0.00 2.17 0.00 0.00 3.45 K intron_retention CG14722 chr3R + chr3R_7567884_7567958 chr3R_7567883_7567884;chr3R_7567958_7567959 chr3R_7567645_7567883;chr3R_7567959_7569480 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.82 6.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG16734,F_chr3R_5081035_5081083 chr3R + chr3R_5081738_5081793 chr3R_5081737_5081738;chr3R_5081793_5081794 chr3R_5081582_5081737;chr3R_5081794_5082249 0.00 NA NA 4.76 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA NA 7.14 NA NA 0.00 NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 K cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27784850_27805244;chr3R_27784850_27798223;chr3R_27784850_27801169 chr3R_27784850_27795477;chr3R_27795508_27798223,chr3R_27795508_27801169,chr3R_27795508_27805244 chr3R_27795478_27795507 chr3R_27784757_27784849;chr3R_27805245_27805341 30.77 NA NA 37.50 36.36 NA 25.00 47.06 20.59 NA NA 38.10 23.08 NA 26.67 29.17 NA NA 23.08 33.33 NA NA NA NA NA 26.67 28.57 NA NA NA 33.33 NA 25.00 40.00 NA NA 25.00 NA NA 35.71 NA 23.08 30.77 NA NA NA NA 36.36 29.17 33.33 46.15 NA NA NA 35.71 NA NA 30.77 K jcn_only_AA eIF2B-delta chr2R + chr2R_19274146_19274464;chr2R_19274146_19274529 chr2R_19274146_19274312 chr2R_19274016_19274145 12.50 2.86 10.81 18.57 NA 16.13 8.89 12.86 10.38 NA 29.41 7.45 52.94 15.91 10.81 13.11 11.76 6.06 19.61 4.23 20.69 11.48 11.11 11.36 28.57 11.11 17.78 14.89 14.29 8.00 11.36 NA NA 18.31 23.08 6.67 12.50 3.12 2.17 17.50 30.00 6.06 28.21 11.76 NA 10.87 7.81 12.00 19.15 13.73 16.67 12.50 14.29 12.00 23.40 20.69 15.00 0.00 K intron_retention CG30389,I_chr2R_17044803_17047935 chr2R - chr2R_17038429_17038487 chr2R_17038428_17038429;chr2R_17038487_17038488 chr2R_17037770_17038428;chr2R_17038488_17038589 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 1.15 0.00 0.00 4.39 12.27 0.84 0.00 0.00 0.00 0.95 0.47 0.00 0.49 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG33087,EI_chr2R_4062337_4074409 chr2R + chr2R_4112449_4112505 chr2R_4112448_4112449;chr2R_4112505_4112506 chr2R_4111116_4112448;chr2R_4112506_4112632 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_150069_150307;chr4_150069_150378;chr4_150069_150353;chr4_150069_150295;chr4_150069_150205 chr4_150069_150180 chr4_149969_150068;chr4_150379_150379 15.48 NA 0.00 20.00 0.00 33.33 30.00 11.76 25.00 NA 0.00 20.00 20.00 40.00 0.00 18.18 14.29 0.00 20.00 22.22 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA 13.33 NA NA NA NA NA NA NA 16.67 0.00 NA NA NA NA NA 20.00 NA NA NA NA NA 0.00 NA NA NA K intron_retention ubl chr2R - chr2R_2697845_2697903 chr2R_2697844_2697845;chr2R_2697903_2697904 chr2R_2697706_2697844;chr2R_2697904_2698066 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 1.98 0.00 0.00 0.00 0.00 0.66 0.00 NA 0.00 0.00 0.00 0.00 3.75 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG13252 chr3L + chr3L_20723911_20730238 chr3L_20723971_20730238 chr3L_20730239_20730570;chr3L_20723692_20723910 100.00 NA 100.00 NA NA NA NA 100.00 100.00 NA NA NA NA 100.00 NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention su(f),I_chrXHet_77570_78035 chrXHet + chrXHet_77736_78035 chrXHet_77735_77736;chrXHet_78035_78036 chrXHet_77432_77735;chrXHet_78036_78135 7.50 6.67 5.94 11.43 8.57 6.06 4.95 10.74 11.89 6.25 4.48 7.79 9.38 9.84 8.00 6.74 8.20 11.11 10.47 11.43 6.25 18.60 7.34 5.88 1.43 4.76 8.70 5.13 10.81 7.25 8.97 8.00 5.00 8.18 8.57 5.56 5.62 4.48 6.25 11.39 5.56 7.48 10.17 6.33 8.45 7.89 8.33 2.99 9.23 4.44 6.96 10.71 7.50 7.41 6.52 7.59 6.48 10.00 K intron_retention Spp,Ets21C,rempA chr2L - chr2L_544267_544332 chr2L_544266_544267;chr2L_544332_544333 chr2L_543427_544266;chr2L_544333_544635 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.63 0.00 0.00 0.00 0.35 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD RnrL,I_chr2L_10327455_10327630 chr2L - chr2L_10327455_10327686 chr2L_10327455_10327630 chr2L_10327355_10327454;chr2L_10327687_10327730 1.35 0.47 0.48 1.57 2.80 1.68 0.60 0.23 1.43 2.86 0.81 1.02 1.48 1.09 0.43 1.17 1.34 0.00 0.87 1.35 1.85 0.00 1.45 1.50 2.96 0.91 1.84 3.85 9.09 1.65 6.54 1.97 1.51 1.11 0.53 4.41 1.11 0.00 2.20 1.82 1.52 1.07 0.97 1.25 1.29 3.40 0.99 1.54 2.67 1.33 1.79 1.27 4.88 1.35 0.40 1.28 3.57 2.27 K intron_retention CG5674 chr2L + chr2L_17969519_17971871 chr2L_17969518_17969519;chr2L_17971871_17971872 chr2L_17969372_17969518;chr2L_17971872_17972003 15.00 NA NA 35.71 NA NA NA NA 12.00 NA NA 23.08 NA NA NA NA NA NA 33.33 10.53 NA 17.24 9.09 11.11 NA NA 5.56 23.53 33.33 15.00 5.88 23.08 16.13 20.00 5.26 11.11 12.50 6.25 5.26 12.50 30.77 15.00 18.75 9.09 7.69 19.05 NA 16.22 20.00 13.33 NA NA NA NA NA 10.53 NA 16.67 K jcn_only_AD CG33298 chr2L + chr2L_9495657_9496144 chr2L_9495712_9496144 chr2L_9496145_9496255;chr2L_9495488_9495656 39.73 NA NA 36.36 NA NA 60.00 44.44 39.02 NA NA 31.03 NA 40.00 NA 55.26 NA NA 31.82 26.92 NA NA NA NA NA 30.00 NA NA NA NA NA NA NA 39.47 NA NA NA NA NA NA NA 52.27 45.83 NA NA NA NA NA 48.48 NA NA NA NA NA NA NA NA NA K intron_retention CG5168 chr2L + chr2L_10424484_10424543 chr2L_10424483_10424484;chr2L_10424543_10424544 chr2L_10424371_10424483;chr2L_10424544_10424670 0.00 0.00 0.61 0.00 0.00 0.00 0.25 0.20 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.33 0.00 0.00 0.66 0.99 0.40 0.72 0.00 0.00 0.00 0.90 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.18 0.41 0.00 0.29 0.00 0.00 0.00 0.39 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Kdm4B,seq chr2R - chr2R_9073661_9073777 chr2R_9073660_9073661;chr2R_9073777_9073778 chr2R_9073650_9073660;chr2R_9073778_9073902 0.00 4.00 0.00 10.00 0.00 0.00 4.17 9.09 3.51 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.03 0.00 NA 3.85 5.56 NA 0.00 0.00 0.00 0.00 6.25 0.00 NA 0.00 0.00 0.00 0.00 NA 5.56 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 K alternative_donor RhoGAPp190,I_chrX_17544272_17544863,I_chrX_17546225_17546531 chrX - chrX_17544272_17546531;chrX_17544272_17546421 chrX_17544272_17546123 chrX_17544172_17544271;chrX_17546532_17546535 34.43 34.78 31.03 36.00 22.22 34.48 30.91 44.44 33.33 10.53 25.93 38.71 31.03 30.77 31.58 34.38 33.33 40.74 59.09 42.62 33.33 25.00 54.55 87.50 55.56 37.50 57.14 12.50 20.00 33.33 29.41 50.00 20.51 28.85 37.50 56.25 50.00 58.33 66.67 24.44 30.00 32.79 36.00 34.62 22.22 30.77 75.00 14.29 32.73 50.00 56.25 53.33 30.00 100.00 40.00 57.14 NA 15.79 K alternative_donor I_chr2R_17169674_17170491,CG10069,I_chr2R_17169897_17170495,I_chr2R_17170432_17170491,I_chr2R_17171765_17171886 chr2R + chr2R_17170432_17170491;chr2R_17169885_17170491;chr2R_17170070_17170491;chr2R_17169897_17170491 chr2R_17170336_17170491 chr2R_17170492_17170591;chr2R_17169869_17169884 5.56 8.33 6.06 11.90 4.55 6.25 13.51 11.36 9.80 3.33 5.00 3.85 7.41 3.85 6.67 14.29 3.85 4.35 9.52 7.81 8.70 9.43 5.56 5.71 4.17 6.25 6.06 5.00 10.26 3.45 8.33 4.17 5.00 9.26 4.17 4.55 4.44 0.00 2.22 7.04 10.34 7.14 4.35 7.69 8.33 3.45 0.00 5.00 10.91 4.76 0.00 0.00 4.55 0.00 11.76 0.00 4.35 7.69 K jcn_only_AD chrw,RI_chr2R_19408490_19409650,RI_chr2R_19408490_19410750 chr2R - chr2R_19409716_19410750 chr2R_19409716_19409778 chr2R_19409651_19409715;chr2R_19410751_19410850 4.04 4.65 2.08 0.00 7.69 2.56 5.77 1.75 3.61 0.00 NA 4.55 6.45 0.00 4.65 3.85 4.17 5.88 3.33 4.21 2.78 3.03 3.23 5.00 8.33 5.41 0.00 0.00 0.00 9.76 1.92 0.00 0.00 4.08 3.23 0.00 7.69 5.00 4.17 4.94 2.63 4.92 5.56 7.69 6.12 0.00 0.00 4.00 5.13 31.25 4.92 3.03 5.71 3.85 1.92 5.56 5.66 2.38 K intron_retention l(2)k05819,I_chr2L_4396173_4396266 chr2L + chr2L_4395951_4396009 chr2L_4395950_4395951;chr2L_4396009_4396010 chr2L_4395236_4395950;chr2L_4396010_4396127 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.90 0.00 0.00 1.00 0.00 0.00 1.89 1.48 0.00 2.27 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 2.07 0.00 0.00 1.87 0.00 0.00 0.00 0.00 1.43 2.06 1.81 2.06 0.00 1.32 0.00 1.65 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.63 0.00 0.00 0.00 K jcn_only_AD CG10194,RI_chr2L_19489213_19489295 chr2L - chr2L_19489213_19489299 chr2L_19489213_19489295 chr2L_19489113_19489212;chr2L_19489300_19489395 10.00 NA NA 18.75 NA NA 3.57 NA 10.00 NA 9.52 3.57 NA NA 15.00 10.00 NA NA NA 8.70 NA 14.29 10.71 3.70 NA 8.00 10.00 NA NA NA 25.00 NA NA 9.52 NA NA 3.12 19.05 8.70 15.38 NA 12.50 NA 7.41 NA 5.00 16.00 NA 8.57 7.41 22.73 NA NA 13.64 NA 9.09 13.16 NA K jcn_only_AD dorsal,RI_chr2L_17438018_17439189,FI_chr2L_17449369_17450215,noncoding_3500,RI_chr2L_17450002_17450219 chr2L - chr2L_17449369_17450325;chr2L_17449369_17449875;chr2L_17449369_17450219;chr2L_17449369_17450310 chr2L_17449369_17450215 chr2L_17449296_17449368;chr2L_17450326_17450359 1.57 2.00 0.00 0.97 0.00 0.00 1.06 2.61 0.73 2.27 0.00 0.68 8.93 1.54 3.75 1.21 0.00 1.82 2.60 1.31 0.00 3.03 5.00 3.70 0.00 10.00 2.08 0.00 2.68 0.00 0.75 2.08 4.17 0.74 3.00 5.41 0.00 0.00 2.27 2.19 3.31 1.57 2.17 0.00 3.17 2.08 1.43 2.82 1.34 0.00 1.11 2.82 0.00 3.45 3.12 1.49 0.00 2.08 K intron_retention CG6454,I_chr3R_20175958_20178905 chr3R + chr3R_20175958_20177774 chr3R_20175957_20175958;chr3R_20177774_20177775 chr3R_20175858_20175957;chr3R_20177775_20178073 2.62 3.85 0.00 6.67 0.00 8.33 8.00 4.44 9.09 5.56 3.03 11.11 0.00 0.00 6.25 0.00 0.00 0.00 6.45 2.60 7.41 7.69 2.27 0.00 0.00 0.00 8.33 10.71 0.00 7.14 0.00 0.00 5.33 1.92 0.00 3.45 0.00 3.33 0.00 3.57 5.71 7.27 0.00 1.89 0.00 6.25 0.00 3.12 4.00 3.85 6.98 0.00 0.00 NA 0.00 0.00 0.00 2.63 K intron_retention Psi,RI_chr2R_12752536_12752596,I_chr2R_12753387_12753659 chr2R - chr2R_12752542_12752596 chr2R_12752541_12752542;chr2R_12752596_12752597 chr2R_12752074_12752541;chr2R_12752597_12752696 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 13.64 NA NA NA NA NA NA NA NA NA 0.00 7.69 NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA 12.50 NA NA 6.06 NA 8.33 NA 13.33 NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA K intron_retention dlg1,I_chrX_11298230_11299306 chrX + chrX_11288280_11289272 chrX_11288279_11288280;chrX_11289272_11289273 chrX_11288271_11288279;chrX_11289273_11289824 6.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA K intron_retention rtGEF,I_chr2L_20359856_20360012 chr2L + chr2L_20360813_20361968 chr2L_20360812_20360813;chr2L_20361968_20361969 chr2L_20360564_20360812;chr2L_20361969_20361994 73.33 NA NA 96.00 NA NA 92.86 NA 69.23 NA NA 52.63 NA NA NA NA NA NA NA 26.67 NA 57.14 63.64 NA NA NA NA 87.50 66.67 77.78 NA NA 68.18 NA NA NA NA NA NA 81.82 100.00 80.00 NA NA 70.00 69.23 NA 58.82 NA 100.00 81.82 NA NA NA NA 77.78 NA 73.33 K jcn_only_AD CG42507,Trl,EI_chr3L_14750431_14750893,I_chr3L_14750431_14750985,CI_chr3L_14750431_14753667,I_chr3L_14754175_14754238 chr3L - chr3L_14750431_14750762;chr3L_14750431_14751007;chr3L_14750431_14750893;chr3L_14750431_14750583 chr3L_14750431_14750941 chr3L_14750331_14750430;chr3L_14751008_14751008 72.53 85.29 65.00 68.00 66.67 69.23 66.67 50.00 65.82 85.19 66.67 68.18 58.54 68.75 66.67 80.70 66.67 61.11 60.53 73.03 59.62 76.74 85.71 77.94 86.49 53.85 89.13 NA 72.34 73.91 86.49 64.52 74.47 60.29 88.89 75.51 90.24 93.55 87.18 76.84 64.00 68.42 50.00 77.78 61.36 71.76 94.29 64.04 68.57 72.73 82.43 84.09 81.82 82.00 68.89 81.82 87.50 73.08 K jcn_only_AD Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8107426_8107747 chr2L_8107439_8107747 chr2L_8107748_8107847;chr2L_8107326_8107425 100.00 100.00 100.00 100.00 99.82 99.84 99.91 100.00 99.89 99.80 100.00 99.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.86 99.82 100.00 100.00 100.00 100.00 100.00 99.72 99.86 100.00 99.80 99.83 100.00 100.00 99.91 100.00 100.00 100.00 100.00 99.83 100.00 100.00 99.93 100.00 100.00 100.00 99.83 100.00 100.00 99.92 99.70 99.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CCS,I_chr2R_6009946_6010014 chr2R - chr2R_6009946_6010014;chr2R_6009964_6010014 chr2R_6009951_6010014 chr2R_6010015_6010040;chr2R_6009884_6009945 0.00 0.00 14.29 15.38 NA 0.00 0.00 0.00 0.00 0.00 NA 13.33 NA 10.00 NA 16.67 0.00 0.00 0.00 4.76 0.00 20.00 8.33 14.29 0.00 0.00 21.43 15.00 28.57 NA 9.09 14.29 0.00 0.00 0.00 25.00 7.14 12.50 23.08 0.00 NA 0.00 NA 16.67 0.00 0.00 0.00 0.00 0.00 8.33 9.09 0.00 0.00 0.00 18.18 0.00 0.00 0.00 K jcn_only_AA CG17471,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1216219_1216285 chr4_1216223_1216285 chr4_1216286_1216354;chr4_1216212_1216218 97.53 92.31 100.00 96.39 97.06 94.12 99.19 96.82 97.81 NA 100.00 97.64 96.15 97.30 96.92 98.14 98.51 100.00 100.00 96.40 93.02 95.45 97.56 100.00 100.00 97.87 100.00 NA NA 87.50 92.45 95.83 90.00 98.63 100.00 88.46 NA NA 96.30 97.83 100.00 98.46 96.26 95.12 NA 95.74 100.00 97.06 96.82 100.00 100.00 97.56 NA 97.50 98.86 97.67 95.83 92.31 K cassette Top1 chrX + chrX_15219559_15219848 chrX_15219559_15219619;chrX_15219772_15219848 chrX_15219620_15219771 chrX_15219308_15219558;chrX_15219849_15219992 100.00 100.00 100.00 99.05 100.00 100.00 100.00 100.00 99.36 100.00 100.00 100.00 100.00 100.00 100.00 99.08 100.00 100.00 100.00 100.00 100.00 99.09 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.81 100.00 99.40 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor B4,I_chr2L_13513474_13549131,I_chr2L_13547133_13549131,I_chr2L_13547162_13547692,I_chr2L_13547304_13549131 chr2L - chr2L_13547304_13549131;chr2L_13547162_13549131 chr2L_13547133_13549131 chr2L_13549132_13549231;chr2L_13547062_13547132 5.13 9.09 18.75 5.56 8.33 8.33 4.76 0.00 4.35 0.00 0.00 9.09 11.11 0.00 10.00 0.00 9.09 0.00 6.25 3.85 10.00 0.00 4.55 9.09 0.00 9.09 5.26 5.88 6.25 4.35 5.88 0.00 8.70 5.56 0.00 0.00 5.00 7.69 5.00 0.00 6.25 0.00 0.00 0.00 6.25 4.55 17.65 4.76 0.00 5.88 0.00 0.00 NA 10.00 5.56 14.29 7.14 0.00 K alternative_donor None chrU + chrU_1182323_1183262;chrU_1179335_1183262 chrU_1178980_1183262 1.52 0.80 0.69 1.52 1.10 3.94 1.71 0.00 1.26 1.67 1.41 1.14 0.72 2.07 2.04 1.66 2.78 1.01 2.22 2.34 1.09 1.64 2.13 3.17 0.00 1.79 0.00 0.00 1.16 1.11 0.48 4.23 14.49 2.76 5.88 1.08 1.05 1.22 0.95 0.50 2.74 2.15 0.00 0.51 1.43 0.00 0.81 0.79 1.92 4.65 2.04 3.51 2.50 3.53 0.56 2.68 2.67 4.08 K cassette CG18659,E_chr2R_5011363_5019110,RI_chr2R_5013572_5014531,I_chr2R_5016147_5016997 chr2R - chr2R_5011651_5013055;chr2R_5011645_5013055 chr2R_5011645_5012248,chr2R_5011651_5012248;chr2R_5012726_5013055 chr2R_5012249_5012725 chr2R_5011194_5011644;chr2R_5013056_5013571 91.46 93.08 93.10 91.51 92.41 93.83 91.51 88.24 92.18 90.91 88.52 93.65 89.09 86.76 92.55 93.85 88.57 89.19 92.65 89.69 90.79 79.40 91.58 91.38 94.57 97.14 89.63 83.04 88.69 94.85 94.38 94.21 95.21 94.17 90.00 96.21 87.15 88.97 91.46 91.36 93.84 90.78 88.33 88.19 93.91 92.35 86.31 95.68 89.57 93.33 85.80 90.36 86.73 92.86 92.55 87.22 89.93 92.86 K alternative_donor CG10365,I_chr3R_19549381_19554106,I_chr3R_19554176_19554388 chr3R + chr3R_19549452_19554388;chr3R_19549381_19554388 chr3R_19549425_19554388 chr3R_19554389_19554488;chr3R_19549281_19549380 4.39 9.09 0.00 3.23 6.25 0.00 6.06 4.35 4.65 0.00 6.25 9.62 6.67 5.56 0.00 3.12 5.26 0.00 10.34 10.00 0.00 NA 5.71 3.57 5.56 0.00 4.55 NA 12.50 3.33 4.35 12.50 3.33 11.11 0.00 NA 4.35 4.35 3.57 4.44 3.33 6.25 11.11 8.33 7.41 5.26 0.00 3.85 6.98 10.53 0.00 0.00 NA 0.00 3.57 0.00 NA 5.88 K alternative_donor RI_chr3L_17480321_17481164,Oatp74D,chr3L_17480319_17480976.0,I_chr3L_17480594_17481164,I_chr3L_17500359_17500724 chr3L + chr3L_17480321_17481164;chr3L_17480290_17481164;chr3L_17480594_17481164 chr3L_17480301_17481164 chr3L_17481165_17481264;chr3L_17480274_17480289 12.50 NA NA 16.67 NA NA 7.69 20.00 21.74 NA NA 8.33 NA NA NA 0.00 NA 10.00 NA 30.00 NA 9.09 14.29 NA 20.00 NA 0.00 33.33 0.00 NA NA NA 10.00 33.33 NA NA 11.11 NA 0.00 22.22 NA 28.57 NA 12.50 NA 25.00 NA 18.18 15.38 NA NA NA NA NA 0.00 0.00 NA 0.00 K alternative_acceptor egr,I_chr2R_5970832_5970930,I_chr2R_5970999_5971058 chr2R + chr2R_5970832_5970908;chr2R_5970832_5970926 chr2R_5970832_5970930 chr2R_5970767_5970831;chr2R_5970931_5970998 0.47 0.66 0.85 0.76 0.88 0.00 0.00 0.00 0.42 0.00 0.96 0.53 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.46 0.91 0.62 0.50 0.45 0.00 0.93 1.11 0.00 0.92 0.89 1.71 1.27 1.11 0.62 0.00 0.85 0.54 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.49 0.00 1.03 0.48 0.49 0.54 0.89 0.00 0.00 0.68 0.65 0.31 0.00 K alternative_donor Ucp4A chrX + chrX_17739432_17739522;chrX_17739458_17739522;chrX_17739454_17739522 chrX_17739394_17739522 chrX_17739523_17739558;chrX_17739094_17739393 36.36 45.45 54.55 NA NA NA 20.00 55.56 27.27 NA NA 35.71 NA NA 55.56 77.78 NA 50.00 57.14 18.18 NA NA 26.32 42.86 60.00 NA 30.77 44.44 NA 42.86 61.90 25.00 36.36 30.77 40.00 60.00 36.36 53.85 31.25 37.50 14.29 43.75 16.67 16.67 30.00 30.77 33.33 36.36 33.33 40.00 31.58 44.44 28.57 27.27 44.44 50.00 33.33 NA K intron_retention Hr78,I_chr3L_21490089_21490390 chr3L - chr3L_21489842_21489919 chr3L_21489841_21489842;chr3L_21489919_21489920 chr3L_21489527_21489841;chr3L_21489920_21489977 4.76 NA 5.26 4.35 5.88 NA 16.00 8.00 7.14 NA NA 9.68 NA 0.00 NA 0.00 NA 20.00 0.00 8.33 11.11 NA 15.15 3.23 17.65 14.29 3.85 0.00 57.89 0.00 0.00 0.00 NA 11.11 0.00 14.29 9.09 9.09 2.56 7.41 NA 8.33 0.00 0.00 NA 0.00 3.70 0.00 10.00 NA 0.00 NA 0.00 0.00 10.53 4.76 0.00 NA K alternative_donor CG16833,I_chr2L_10994022_10994325,I_chr2L_10994919_10997334 chr2L + chr2L_10989871_10990095 chr2L_10989875_10990095 chr2L_10990096_10990783;chr2L_10989656_10989870 80.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG12177 chrX - chrX_13572787_13572887 chrX_13572786_13572787;chrX_13572887_13572888 chrX_13571932_13572786;chrX_13572888_13573334 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.26 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG13822 chr3R + chr3R_19503887_19503959 chr3R_19503886_19503887;chr3R_19503959_19503960 chr3R_19503578_19503886;chr3R_19503960_19504152 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 2.44 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 1.09 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.75 0.00 K cassette unc-13,RI_chr4_892852_895828,RI_chr4_894198_895828,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_892852_895828 chr4_892852_893839;chr4_894198_895828 chr4_893840_894197 chr4_892753_892851;chr4_895829_895928 94.87 97.14 97.44 77.61 96.55 93.02 97.87 90.22 92.93 96.55 96.00 95.24 91.43 91.49 91.67 98.39 94.44 97.06 93.33 98.88 96.55 93.66 92.59 100.00 92.31 88.24 95.59 96.43 72.55 89.36 94.32 94.87 91.30 98.77 91.11 94.03 93.33 95.00 96.88 96.67 93.44 95.18 95.00 92.77 97.44 96.72 94.74 95.89 98.65 91.11 96.49 100.00 85.00 100.00 93.88 85.71 95.56 91.07 K alternative_acceptor Taf6 chr3L + chr3L_19594248_19594309 chr3L_19594248_19594296 chr3L_19594013_19594247;chr3L_19594310_19594484 74.34 55.00 80.00 85.00 90.00 70.00 86.67 76.47 72.00 90.00 90.00 75.86 87.50 NA 76.92 71.43 55.56 75.00 71.43 75.00 76.92 48.48 75.76 70.83 77.78 91.67 66.67 73.68 80.00 76.47 88.89 73.08 73.08 73.33 66.67 100.00 77.42 68.18 68.97 80.56 80.95 68.97 66.67 80.00 47.06 68.00 60.61 93.33 83.87 71.43 63.33 90.91 66.67 70.37 92.86 67.86 70.27 71.43 N alternative_acceptor CG18854,RI_chr2L_9789598_9789790,I_chr2L_9789694_9789790,REI_chr2L_9789718_9789790,I_chr2L_9790307_9790615,I_chr2L_9790310_9790556 chr2L - chr2L_9789740_9789790;chr2L_9789694_9789790;chr2L_9789718_9789790;chr2L_9789751_9789790;chr2L_9789598_9789790 chr2L_9789733_9789790 chr2L_9789791_9789832;chr2L_9789594_9789597 57.14 53.33 57.14 58.14 57.14 65.22 61.54 64.41 56.16 68.42 56.25 66.67 59.09 54.84 50.00 63.33 58.33 58.33 65.52 56.92 60.00 62.07 52.94 55.56 48.39 55.56 50.98 43.48 51.72 57.69 62.22 52.38 63.33 52.94 57.69 27.59 57.14 54.17 62.16 59.02 67.86 64.15 50.00 60.61 55.00 63.64 48.00 57.45 52.38 56.52 60.53 65.52 42.11 50.00 56.76 63.64 40.91 64.00 K intron_retention RpL13,I_chr2L_9967475_9967616,E_chr2L_9967706_9968364 chr2L + chr2L_9967359_9967616 chr2L_9967358_9967359;chr2L_9967616_9967617 chr2L_9967293_9967358;chr2L_9967617_9967705 0.90 0.90 0.34 0.32 0.19 0.22 1.75 0.16 0.31 1.04 0.23 1.13 0.00 0.56 0.19 0.73 0.00 0.39 0.27 0.37 0.54 5.14 2.90 1.73 1.11 0.17 12.77 2.49 2.65 2.19 0.44 1.29 1.20 0.34 2.63 1.66 4.67 2.56 5.88 0.66 1.88 0.30 0.00 0.36 0.66 2.01 2.83 1.09 0.63 4.24 4.11 3.75 0.41 13.79 0.00 2.80 1.33 0.75 K intron_retention CG3689,I_chr3L_9405436_9406302 chr3L + chr3L_9405083_9406302 chr3L_9405082_9405083;chr3L_9406302_9406303 chr3L_9404917_9405082;chr3L_9406303_9406402 7.44 7.89 5.33 5.00 7.79 4.29 13.85 8.94 9.63 4.84 6.52 11.19 12.90 7.35 6.02 12.12 8.47 5.63 7.78 10.49 10.81 6.58 9.88 5.93 7.14 8.82 7.55 8.33 5.26 3.85 6.74 3.31 3.10 8.27 7.79 7.69 15.22 7.14 6.84 4.58 2.34 10.00 10.94 10.14 6.20 6.36 7.44 3.00 8.27 4.81 4.35 7.29 8.97 7.96 4.40 9.60 7.69 2.87 K intron_retention CG11071 chrX - chrX_13750793_13751014 chrX_13750792_13750793;chrX_13751014_13751015 chrX_13749268_13750792;chrX_13751015_13751252 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.15 1.18 0.00 0.00 1.31 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 1.22 0.00 0.00 0.00 0.00 0.00 1.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.17 3.92 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention shi,RI_chrX_15786633_15786860,RE_chrX_15793108_15795563 chrX + chrX_15786451_15786860 chrX_15786450_15786451;chrX_15786860_15786861 chrX_15786428_15786450;chrX_15786861_15786960 69.57 NA 72.73 60.87 NA NA 60.87 74.07 68.00 NA NA 77.78 58.33 75.00 66.67 68.97 90.00 77.78 62.50 75.00 NA NA 50.00 NA NA 66.67 NA NA NA NA 73.33 NA 87.50 67.86 72.73 NA NA NA NA 88.89 NA 69.57 60.00 NA NA NA NA NA 73.91 NA NA NA NA NA 46.15 NA NA NA K multi_cassette Ect4,I_chr3L_8075556_8086158,C_chr3L_8091754_8101552,I_chr3L_8091826_8092243,I_chr3L_8098397_8101385,I_chr3L_8098758_8101738,I_chr3L_8100030_8101385 chr3L + chr3L_8098397_8101385 chr3L_8098397_8098539;chr3L_8098758_8099115;chr3L_8100050_8101385 chr3L_8098540_8098757;chr3L_8099116_8100049 chr3L_8098297_8098396;chr3L_8101386_8101485 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 97.37 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.51 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.55 95.45 100.00 100.00 100.00 K intron_retention msk,I_chr3L_8109906_8110404 chr3L + chr3L_8111793_8111844 chr3L_8111792_8111793;chr3L_8111844_8111845 chr3L_8111647_8111792;chr3L_8111845_8112642 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 1.49 0.00 0.00 0.00 0.00 0.00 0.44 0.00 1.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG17734,I_chr3R_7068286_7069503 chr3R - chr3R_7068286_7069503 chr3R_7068736_7069503 chr3R_7069504_7069603;chr3R_7068186_7068285 98.91 98.88 100.00 97.00 100.00 98.68 97.85 99.05 100.00 97.06 98.36 98.57 97.87 100.00 98.89 98.63 98.04 100.00 100.00 100.00 100.00 98.85 99.05 99.20 98.57 93.42 98.91 98.55 98.78 98.84 98.65 97.92 100.00 99.11 98.53 96.43 99.14 98.91 100.00 98.28 94.66 99.32 98.36 98.80 99.33 99.42 100.00 100.00 100.00 97.44 100.00 98.46 100.00 100.00 98.89 99.14 99.21 99.38 K alternative_acceptor eIF5,RI_chrX_15883163_15883424,I_chrX_15883297_15883424,EI_chrX_15885411_15885854,RI_chrX_15885416_15885611 chrX - chrX_15883360_15883424;chrX_15883163_15883424;chrX_15883143_15883424 chrX_15883302_15883424 chrX_15883425_15883509;chrX_15883079_15883142 69.86 61.54 75.00 76.19 58.82 65.22 83.64 74.63 70.49 50.00 57.14 73.91 63.33 70.27 53.33 64.20 70.37 76.19 55.81 64.44 58.82 70.37 55.00 53.33 NA 58.33 63.16 69.57 73.68 81.82 70.15 52.94 75.68 85.71 79.31 78.26 64.71 60.00 76.92 81.40 79.31 75.00 67.65 73.53 57.14 83.72 62.96 75.76 76.14 64.00 75.76 33.33 46.15 52.94 65.91 77.78 53.12 84.09 K alternative_last_exon CG17233,I_chr3L_20232803_20232962,RI_chr3L_20232898_20232962 chr3L - chr3L_20232803_20232962;chr3L_20231011_20232962 chr3L_20232645_20232962,chr3L_20232711_20232962,chr3L_20232648_20232962,chr3L_20232714_20232962 chr3L_20229120_20231010 chr3L_20231838_20232644 chr3L_20232963_20233016 97.96 96.30 97.87 98.21 97.37 100.00 97.73 96.49 97.85 96.67 100.00 97.56 93.55 97.06 100.00 97.62 100.00 100.00 100.00 98.20 100.00 94.12 98.85 97.47 97.96 100.00 95.24 92.86 93.62 98.21 100.00 97.62 97.10 96.88 97.96 98.15 99.08 98.51 98.94 96.25 97.50 97.80 100.00 95.92 98.44 96.15 98.25 97.18 98.68 98.36 98.68 97.50 98.21 98.04 96.15 98.04 98.18 97.06 K intron_retention CG14967 chr3L - chr3L_3218489_3218544 chr3L_3218488_3218489;chr3L_3218544_3218545 chr3L_3217946_3218488;chr3L_3218545_3218671 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA NA K intron_retention fws,CG6453 chr2L - chr2L_17479114_17479171 chr2L_17479113_17479114;chr2L_17479171_17479172 chr2L_17478444_17479113;chr2L_17479172_17480242 4.17 3.57 8.16 6.10 8.89 0.00 3.61 3.57 2.94 2.38 4.17 2.92 4.17 4.00 1.82 0.00 0.00 3.92 0.00 2.99 5.77 4.17 8.33 2.90 0.00 5.77 10.29 8.33 16.33 2.04 8.33 4.44 8.05 5.06 0.00 5.26 2.44 0.00 2.15 4.82 10.61 3.70 2.50 0.00 5.00 7.46 4.55 4.17 6.12 5.41 3.85 5.13 5.00 0.00 5.08 2.56 2.65 6.25 K jcn_only_AA Mat89Ba,RI_chr3R_12096350_12096418 chr3R - chr3R_12096350_12096418 chr3R_12096363_12096418 chr3R_12096419_12096518;chr3R_12096250_12096349 97.44 95.65 100.00 97.92 100.00 NA 100.00 96.72 97.73 NA 91.67 95.35 97.22 100.00 100.00 94.44 100.00 100.00 91.89 97.62 NA 93.55 96.00 95.35 100.00 100.00 100.00 97.62 90.91 96.15 86.67 NA NA 98.36 92.59 96.30 100.00 NA NA 97.14 NA 94.92 100.00 94.29 NA NA 100.00 97.44 98.33 100.00 97.22 90.91 95.24 NA 100.00 NA 100.00 93.10 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2813977;chr2R_2814097_2814174;chr2R_2814327_2814894;chr2R_2815657_2816013;chr2R_2816342_2817753 chr2R_2813978_2814096;chr2R_2814175_2814326;chr2R_2814895_2815656;chr2R_2816014_2816341 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG31689,I_chr2L_2730373_2736310,I_chr2L_2736431_2737036 chr2L + chr2L_2736431_2737036 chr2L_2736431_2737031 chr2L_2736331_2736430;chr2L_2737037_2737136 100.00 95.45 95.00 100.00 93.33 93.75 100.00 100.00 100.00 NA 100.00 97.06 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.18 100.00 100.00 97.87 95.24 94.74 95.65 93.33 91.67 90.00 96.67 100.00 95.83 96.55 100.00 97.44 97.14 100.00 97.78 87.50 100.00 100.00 100.00 89.47 100.00 97.50 100.00 100.00 100.00 100.00 100.00 96.00 96.15 100.00 100.00 K intron_retention CG7685 chr3R + chr3R_14230769_14230821 chr3R_14230768_14230769;chr3R_14230821_14230822 chr3R_14230748_14230768;chr3R_14230822_14230881 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 92.86 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 96.67 100.00 K intron_retention Cap-G chr2R + chr2R_9021312_9021387 chr2R_9021311_9021312;chr2R_9021387_9021388 chr2R_9021135_9021311;chr2R_9021388_9022202 0.00 0.00 0.00 3.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 K intron_retention eIF-4a,I_chr2L_5981836_5984010,I_chr2L_5985221_5985289 chr2L + chr2L_5982822_5983009 chr2L_5982821_5982822;chr2L_5983009_5983010 chr2L_5982753_5982821;chr2L_5983010_5983236 0.59 0.59 0.00 1.06 0.34 0.77 0.48 0.43 0.61 0.00 1.10 0.38 0.92 0.77 0.60 0.24 0.00 0.00 0.00 0.65 0.00 1.53 0.43 0.90 0.87 0.53 2.11 2.72 1.79 1.56 0.00 0.52 1.14 0.43 0.34 0.00 0.53 0.00 0.85 0.85 0.00 0.64 0.00 0.88 0.00 0.64 0.00 2.92 0.22 0.88 0.41 0.34 0.58 0.81 0.92 1.01 0.68 4.00 K jcn_only_AA Bj1 chr3L - chr3L_5925418_5925624 chr3L_5925565_5925624 chr3L_5925625_5925725 96.55 NA NA 80.00 NA NA NA 100.00 96.88 NA NA 100.00 NA NA NA NA NA NA NA 96.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA NA 92.86 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 90.00 NA K alternative_donor CG4239,I_chrX_16279725_16280317 chrX + chrX_16279721_16281003;chrX_16279372_16281003 chrX_16279725_16281003 chrX_16281004_16281322;chrX_16279353_16279371 5.41 0.00 0.00 4.44 11.11 8.33 10.34 4.44 10.00 NA 40.00 4.26 8.33 0.00 5.26 7.69 0.00 7.69 4.76 7.32 33.33 0.00 5.00 3.33 4.55 10.53 4.35 4.35 6.67 15.38 9.09 7.14 15.38 4.65 4.76 5.56 9.38 3.12 4.55 3.39 NA 6.52 7.14 9.09 NA 4.76 0.00 9.09 4.23 0.00 6.25 0.00 5.88 7.69 5.26 3.85 10.00 25.00 K intron_retention Aldh-III,RI_chr2R_3357578_3357636,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3357019_3357229 chr2R_3357018_3357019;chr2R_3357229_3357230 chr2R_3356865_3357018;chr2R_3357230_3357350 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.46 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor stck,I_chr3R_4184313_4184380,I_chr3R_4184660_4184730 chr3R + chr3R_4182818_4184192;chr3R_4183179_4184192 chr3R_4182496_4184192 chr3R_4184193_4184312;chr3R_4182427_4182495 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Dscam,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3249373_3250528 chr2R_3249372_3249373;chr2R_3250528_3250529 chr2R_3249273_3249372;chr2R_3250529_3250559 35.71 NA NA 46.15 NA NA NA 35.71 13.33 NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA RpS18,CG8908,EI_chr2R_16151918_16151997,I_chr2R_16151918_16152036,I_chr2R_16151938_16152065,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16151938_16152065;chr2R_16151938_16152036;chr2R_16151938_16151997 chr2R_16151938_16152006 chr2R_16151852_16151937;chr2R_16152066_16152066 0.01 0.00 0.00 0.02 0.00 0.04 0.02 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.02 0.04 0.01 0.01 0.01 0.01 0.00 0.00 0.01 0.01 0.03 0.03 0.01 0.33 0.01 0.03 0.02 0.00 0.04 0.01 0.00 0.01 0.00 0.00 0.00 0.03 0.00 0.01 0.02 0.00 0.02 0.00 0.01 0.02 0.01 0.00 0.02 0.02 0.00 0.00 0.01 0.01 0.01 0.00 K alternative_acceptor Cap-H2 chr3R + chr3R_6589674_6589832;chr3R_6589674_6589835 chr3R_6589674_6589871 chr3R_6588751_6589673;chr3R_6589872_6590095 0.00 16.67 0.00 9.09 NA 0.00 11.11 7.14 8.33 NA NA 0.00 0.00 0.00 14.29 0.00 11.11 NA 0.00 6.67 0.00 NA 0.00 0.00 NA 0.00 10.00 14.29 NA NA 0.00 NA NA 0.00 NA NA NA NA 12.50 14.29 NA 17.65 NA NA NA NA NA NA 11.11 NA 0.00 NA NA NA 0.00 NA NA NA K intron_retention Fer1HCH,I_chr3R_26212319_26213496,I_chr3R_26212834_26213185,I_chr3R_26213132_26213185 chr3R - chr3R_26213273_26213496 chr3R_26213272_26213273;chr3R_26213496_26213497 chr3R_26213186_26213272;chr3R_26213497_26213534 46.12 38.57 43.35 46.12 44.76 51.17 64.25 51.30 44.85 38.65 46.88 47.21 62.40 49.07 46.12 49.77 45.16 41.10 48.20 43.61 42.95 40.14 44.42 50.43 60.35 56.45 61.38 58.92 61.71 43.66 46.86 57.69 47.47 44.53 56.65 39.03 37.01 36.63 41.61 60.69 73.57 41.52 48.51 45.19 53.50 56.71 38.92 67.59 38.06 35.54 55.00 40.00 35.95 42.19 49.06 36.47 37.29 57.61 K intron_retention RpL35A chr3R - chr3R_1291750_1291874 chr3R_1291749_1291750;chr3R_1291874_1291875 chr3R_1291662_1291749;chr3R_1291875_1291974 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.06 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.03 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5850,I_chr2L_9963013_9963451 chr2L - chr2L_9961618_9961728 chr2L_9961617_9961618;chr2L_9961728_9961729 chr2L_9961359_9961617;chr2L_9961729_9961775 12.20 14.49 8.70 24.68 15.79 17.54 9.09 24.00 12.28 9.09 9.80 9.48 7.32 17.31 10.77 15.62 10.00 10.94 16.28 6.84 9.09 50.78 24.00 14.29 11.32 13.64 15.71 25.00 11.11 10.14 10.34 16.98 20.00 11.11 16.33 14.81 15.93 13.85 14.58 12.09 10.42 11.90 12.20 16.07 8.04 11.76 17.86 12.50 8.57 8.57 15.79 17.65 8.62 11.43 11.29 15.56 11.43 11.49 K intron_retention l(1)G0136 chrX + chrX_15629208_15629279 chrX_15629207_15629208;chrX_15629279_15629280 chrX_15629132_15629207;chrX_15629280_15629354 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD mthl3 chr2R - chr2R_13338538_13340067;chr2R_13338538_13340031;chr2R_13338538_13339957;chr2R_13338538_13340007 chr2R_13338538_13338593 chr2R_13338407_13338537;chr2R_13340068_13340078 8.70 14.29 0.00 14.71 NA NA 16.13 16.00 6.12 NA 4.76 6.25 4.26 10.00 5.00 13.95 12.90 12.50 3.70 5.56 10.00 35.00 NA NA NA NA 4.00 NA NA NA 2.94 NA NA 12.00 3.85 NA NA NA NA NA NA 5.13 12.00 NA NA 8.70 NA 9.52 2.63 NA 20.00 NA NA NA 4.35 NA NA NA K intron_retention CG12734,I_chr3L_3183812_3183932,CG42494,I_chr3L_3184645_3185360 chr3L + chr3L_3184645_3185228 chr3L_3184644_3184645;chr3L_3185228_3185229 chr3L_3184545_3184644;chr3L_3185229_3185272 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.46 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042888_5042960;chr2L_5042888_5043077 chr2L_5042888_5042983 chr2L_5042835_5042887;chr2L_5043078_5043083 17.24 26.67 14.29 23.81 26.32 15.00 30.00 19.57 16.42 0.00 34.78 26.98 41.67 25.00 21.88 14.55 26.09 23.81 9.68 12.00 28.00 14.29 19.35 15.38 11.11 14.81 16.67 25.00 16.67 9.52 25.00 14.29 16.67 15.69 36.84 11.11 41.94 10.53 13.64 21.21 18.75 14.58 30.43 12.12 17.65 10.34 14.81 21.05 23.64 22.22 14.81 23.81 25.00 10.53 35.14 8.70 17.24 9.09 K jcn_only_AD vir-1,I_chr2L_12404178_12407208,RE_chr2L_12409622_12421640,noncoding_2764,I_chr2L_12421830_12423260 chr2L - chr2L_12421830_12423260;chr2L_12421830_12423333;chr2L_12421830_12423278 chr2L_12421830_12423322 chr2L_12421816_12421829;chr2L_12423334_12423360 93.81 93.15 93.10 93.78 93.26 91.73 92.20 89.14 91.88 95.28 90.99 94.60 91.59 89.40 91.42 95.01 88.42 92.90 90.50 95.53 87.50 93.81 94.33 96.31 93.18 92.48 94.39 94.04 92.49 94.78 95.10 95.30 92.96 90.99 95.63 89.92 93.52 96.12 96.35 93.39 93.88 93.23 91.49 94.85 92.05 96.26 96.38 96.08 93.87 94.46 96.06 94.13 95.65 95.23 93.41 94.00 95.40 95.40 N jcn_only_AA CG42490,noncoding_3620,I_chr2L_18665287_18666474,RI_chr2L_18666413_18666474,CREI_chr2L_18666629_18666680 chr2L + chr2L_18665915_18666474 chr2L_18665915_18666352 chr2L_18665676_18665914;chr2L_18666475_18666511 44.72 NA NA NA NA NA NA NA 58.33 NA NA 38.71 NA NA NA NA 35.00 NA NA 55.56 NA NA NA 41.67 NA NA NA NA NA NA 42.50 NA NA 45.00 NA NA 45.45 NA NA 48.28 NA 44.44 60.00 NA NA 53.12 NA NA 43.48 NA NA NA NA NA 38.46 NA NA NA K alternative_donor skpA chrX + chrX_550433_551131;chrX_550498_551131;chrX_550818_551131;chrX_550638_551131;chrX_550523_551131;chrX_550654_551131 chrX_550774_551131 chrX_551132_551937;chrX_550426_550432 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 K intron_retention CG4133 chr2L + chr2L_457563_457614 chr2L_457562_457563;chr2L_457614_457615 chr2L_457400_457562;chr2L_457615_458727 4.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 4.55 8.33 7.69 NA NA 35.00 35.29 0.00 NA 0.00 7.69 4.55 NA NA NA 10.53 NA 5.88 0.00 NA NA NA 0.00 14.29 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 K jcn_only_AD CG17019,I_chr2R_8821104_8821171 chr2R - chr2R_8821104_8821175 chr2R_8821104_8821171 chr2R_8821004_8821103;chr2R_8821176_8821271 0.00 0.00 0.00 0.00 0.00 1.80 0.00 0.00 0.00 0.00 1.16 0.95 0.00 0.00 0.79 0.60 0.00 1.00 0.00 0.32 0.89 0.00 0.00 0.00 0.00 0.99 0.70 0.83 0.70 0.00 0.00 0.00 0.00 1.06 0.00 0.61 0.69 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.52 0.00 0.00 1.03 0.00 0.81 0.70 0.00 0.00 0.61 N jcn_only_AD Aldolase,I_chr3R_22083764_22086684 chr3R - chr3R_22082030_22082195;chr3R_22082030_22082575 chr3R_22082030_22082256 chr3R_22081992_22082029 34.62 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 34.62 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG14741 chr3R - chr3R_7901435_7901500 chr3R_7901434_7901435;chr3R_7901500_7901501 chr3R_7901213_7901434;chr3R_7901501_7902013 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19563512_19564570 chr2R_19563512_19564543 chr2R_19563412_19563511;chr2R_19564571_19564665 100.00 100.00 100.00 99.33 100.00 100.00 98.44 100.00 100.00 100.00 98.72 99.38 100.00 98.97 100.00 100.00 100.00 100.00 100.00 99.43 100.00 100.00 100.00 100.00 100.00 100.00 98.85 NA 100.00 100.00 99.21 100.00 100.00 100.00 98.21 100.00 100.00 97.22 100.00 98.58 100.00 98.97 98.67 100.00 98.10 100.00 100.00 100.00 99.40 100.00 99.11 96.97 98.48 97.96 100.00 97.33 100.00 100.00 K intron_retention l(2)k01209,I_chr2R_13308079_13310771,I_chr2R_13309452_13310771,RI_chr2R_13310877_13311160 chr2R + chr2R_13308079_13308952 chr2R_13308078_13308079;chr2R_13308952_13308953 chr2R_13307979_13308078;chr2R_13308953_13309416 94.12 100.00 95.45 89.29 100.00 91.67 84.62 95.65 96.55 NA 90.91 96.00 90.91 100.00 100.00 92.59 100.00 94.12 94.12 91.43 100.00 100.00 96.00 96.30 100.00 77.27 88.57 100.00 96.15 93.75 86.96 100.00 88.89 96.43 100.00 83.33 100.00 92.86 90.00 100.00 83.33 88.89 87.50 93.33 NA 94.44 94.12 94.12 93.94 100.00 90.00 95.00 76.92 NA 91.30 91.67 83.33 85.71 K jcn_only_AA gwl chr3R + chr3R_14572444_14572973 chr3R_14572444_14572958 chr3R_14572389_14572443;chr3R_14572974_14573114 100.00 100.00 NA 100.00 NA NA 100.00 96.67 97.73 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 NA NA NA NA 97.50 NA 100.00 100.00 NA NA 100.00 NA NA NA K alternative_donor CG13865,I_chrX_22415456_22415654,RI_chrX_22415518_22416288 chrX + chrX_22415456_22415654 chrX_22415518_22415654 chrX_22415655_22415754;chrX_22415418_22415455 100.00 100.00 100.00 97.73 100.00 100.00 100.00 100.00 98.72 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 97.06 100.00 97.06 98.25 97.96 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 97.50 96.67 98.11 98.21 100.00 100.00 100.00 100.00 100.00 97.62 100.00 97.56 100.00 K intron_retention noncoding_14427,F_chr3R_20600_20670,F_chr3R_21535_21590 chr3R + chr3R_20596_20670 chr3R_20595_20596;chr3R_20670_20671 chr3R_20500_20595;chr3R_20671_20770 10.53 NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette Rheb,RI_chr3R_1395455_1395563,CRMP chr3R + chr3R_1395194_1395563 chr3R_1395194_1395296;chr3R_1395505_1395563 chr3R_1395297_1395504 chr3R_1395122_1395193;chr3R_1395564_1395663 89.13 88.00 86.27 77.22 83.58 88.89 87.02 86.34 86.67 95.35 89.71 88.75 93.06 90.00 86.54 90.70 87.67 89.66 86.02 87.38 90.24 62.16 86.73 86.90 81.82 82.28 88.78 96.77 89.36 86.11 89.29 94.12 91.11 92.91 90.48 80.56 92.31 85.51 90.20 89.83 85.48 88.70 90.62 96.51 89.42 93.58 87.30 95.89 92.18 77.32 85.88 84.48 89.23 94.83 89.81 89.13 92.55 95.96 K jcn_only_AD mei-P26 chrX + chrX_9057324_9059714 chrX_9057432_9059714 chrX_9059715_9060492;chrX_9057300_9057323 82.84 NA 85.00 NA NA NA NA 78.26 NA NA NA 81.82 NA NA 95.45 84.62 NA NA NA 96.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 83.87 NA NA NA NA NA NA NA 75.00 NA NA NA NA NA 46.88 75.00 NA NA NA NA NA NA NA NA NA K intron_retention CtBP chr3R + chr3R_8850767_8851110 chr3R_8850766_8850767;chr3R_8851110_8851111 chr3R_8850546_8850766;chr3R_8851111_8851987 29.59 21.74 NA 66.67 33.33 NA 33.33 37.50 34.62 NA 28.57 35.29 NA 25.00 25.00 35.29 NA NA NA 30.77 NA 29.17 NA 25.00 33.33 NA NA 61.54 NA 30.00 NA 41.67 28.57 31.25 NA 15.38 19.23 23.08 42.11 29.17 NA 34.78 NA 31.82 6.25 30.77 12.50 NA 26.32 12.00 25.00 NA NA 28.57 NA NA 17.65 38.46 K intron_retention Aldh-III,I_chr2R_3356541_3356614,RI_chr2R_3357578_3357636,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3356043_3356864 chr2R_3356042_3356043;chr2R_3356864_3356865 chr2R_3355927_3356042;chr2R_3356865_3357018 24.69 30.26 24.14 31.78 27.85 27.85 28.09 39.50 19.57 42.86 21.95 25.87 40.00 29.41 24.18 23.08 22.09 34.00 27.10 24.02 21.92 58.33 22.89 20.00 42.86 33.33 32.18 35.00 23.08 25.00 30.93 16.28 13.16 27.12 25.00 21.74 18.09 17.28 23.58 24.71 26.67 24.69 27.94 19.48 11.63 22.09 16.30 26.92 24.65 16.44 21.88 26.92 16.67 27.12 27.55 17.82 15.62 24.32 K intron_retention CG3893,CSN1b chr3L - chr3L_18894352_18894419 chr3L_18894351_18894352;chr3L_18894419_18894420 chr3L_18893716_18894351;chr3L_18894420_18894673 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD osa chr3R - chr3R_13522309_13523386 chr3R_13522309_13523377 chr3R_13522092_13522308;chr3R_13523387_13523635 20.18 17.12 15.79 25.10 23.58 18.35 21.17 19.91 14.07 20.75 21.49 21.55 23.93 12.71 21.74 14.53 21.17 23.85 23.08 21.24 24.72 18.84 23.12 15.11 11.11 21.19 19.88 30.19 34.10 17.59 20.18 19.75 19.84 16.22 16.67 19.63 16.57 15.84 25.00 6.91 21.30 20.47 21.70 21.32 18.89 20.00 25.33 28.57 14.68 19.51 22.86 14.77 31.25 14.81 18.67 25.35 25.93 13.79 K intron_retention I_chr2L_100704_100835,CG11377 chr2L + chr2L_103435_103515 chr2L_103434_103435;chr2L_103515_103516 chr2L_103006_103434;chr2L_103516_104142 1.80 0.00 1.04 6.42 3.03 1.32 1.92 3.05 3.07 0.00 1.52 3.97 1.43 3.26 2.20 4.80 0.00 0.00 2.78 0.99 1.72 2.56 7.27 2.99 0.00 1.80 8.00 7.25 2.53 0.00 3.08 1.82 2.53 3.33 0.00 10.53 0.95 0.00 1.98 0.81 1.22 3.61 1.27 0.00 0.00 2.34 0.00 1.37 2.21 2.56 3.23 0.00 1.10 0.00 1.68 4.35 0.00 1.31 K jcn_only_AA PGRP-LA chr3L + chr3L_9330034_9330097 chr3L_9330034_9330085 chr3L_9329812_9330033;chr3L_9330098_9330321 54.59 48.15 NA 43.48 NA NA NA 57.14 58.97 NA NA NA NA NA NA 55.00 NA NA NA NA NA 57.50 NA 53.85 NA NA NA 55.00 NA NA NA NA NA 63.64 NA NA 42.31 NA 50.00 44.00 NA 46.43 NA NA NA NA 53.85 NA 57.14 NA NA NA 54.17 NA NA 55.00 60.00 NA K multi_cassette unc-13,RI_chr4_892852_895828,RI_chr4_894198_895828,E_chr4_894796_894871,I_chr4_895008_895828,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_894198_895828 chr4_894198_894260;chr4_894553_894619;chr4_894787_894871;chr4_895094_895828 chr4_894261_894552;chr4_894620_894786;chr4_894872_895093 chr4_894098_894197;chr4_895829_895928 97.62 100.00 96.00 100.00 94.74 100.00 95.40 95.56 98.31 100.00 100.00 98.04 96.00 96.00 96.77 100.00 95.83 100.00 100.00 97.87 100.00 97.26 100.00 96.55 96.67 96.15 96.23 94.74 94.12 95.65 97.83 95.00 84.21 98.00 100.00 97.37 100.00 94.12 96.15 100.00 95.83 92.00 95.83 93.48 100.00 100.00 100.00 96.67 97.78 100.00 97.62 100.00 100.00 100.00 87.50 100.00 96.67 100.00 K jcn_only_AA Zyx102EF,I_chr4_1078380_1078835,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1078644_1078835;chr4_1078778_1078835;chr4_1078782_1078835 chr4_1078666_1078835 chr4_1078836_1078848;chr4_1078433_1078643 48.00 NA NA 54.17 NA NA 35.00 57.89 48.00 NA NA 57.14 NA NA NA 54.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 40.91 NA NA 31.03 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 45.71 NA NA NA NA NA NA NA NA NA N alternative_donor sxc,I_chr2R_1203985_1205289,I_chr2R_1208121_1213310,I_chr2R_1213177_1213308 chr2R + chr2R_1194785_1194977;chr2R_1194858_1194977 chr2R_1194919_1194977 chr2R_1194978_1195157;chr2R_1194775_1194784 87.50 NA NA 100.00 NA NA NA 77.78 87.50 NA NA 100.00 NA NA NA 83.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA K intron_retention Mocs1,I_chr3L_11064230_11064309 chr3L + chr3L_11064230_11064658 chr3L_11064229_11064230;chr3L_11064658_11064659 chr3L_11064151_11064229;chr3L_11064659_11065510 0.00 0.00 NA 10.53 NA NA 2.70 0.00 0.00 0.00 NA 0.00 NA NA 0.00 13.33 NA NA NA 0.00 NA 3.23 0.00 0.00 0.00 NA 0.00 0.00 4.44 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 NA 0.00 0.00 0.00 K cassette B52,F_chr3R_9488762_9491174,E_chr3R_9488770_9491174,RI_chr3R_9489655_9489713 chr3R + chr3R_9488774_9489733 chr3R_9488774_9489176;chr3R_9489655_9489733 chr3R_9489177_9489654 chr3R_9488692_9488773;chr3R_9489734_9489796 92.50 95.83 92.00 100.00 80.95 89.47 77.42 100.00 92.73 81.08 95.65 91.84 82.76 92.31 85.71 97.14 95.45 95.00 92.59 86.00 95.65 97.44 88.33 92.50 86.67 78.26 93.75 96.55 72.34 97.56 59.00 97.30 98.11 90.24 96.67 97.56 92.00 87.10 91.89 92.75 89.74 95.74 95.83 90.91 90.62 92.86 96.15 93.65 93.48 90.62 91.84 89.29 80.77 84.00 96.55 92.68 86.96 95.31 K alternative_acceptor RI_chr3L_19787260_19787323,Ir76a,RI_chr3L_19799338_19799408,Kap-alpha1 chr3L + chr3L_19795029_19795090;chr3L_19795029_19795086 chr3L_19795029_19795077 chr3L_19795020_19795028;chr3L_19795091_19795214 2.94 NA NA NA NA NA NA 12.50 0.00 NA NA NA NA NA NA 14.29 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 5.88 NA NA NA NA NA NA NA NA NA K intron_retention oaf chr2L + chr2L_2495889_2496398 chr2L_2495888_2495889;chr2L_2496398_2496399 chr2L_2495570_2495888;chr2L_2496399_2497357 0.00 0.00 11.11 0.00 NA NA NA 11.76 0.00 3.03 0.00 12.90 NA NA 11.76 NA NA 0.00 NA 8.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 15.00 0.00 NA NA 0.00 5.26 NA 0.00 0.00 3.45 5.88 0.00 NA 8.00 NA 3.70 0.00 0.00 0.00 2.70 6.90 NA 4.76 NA NA 0.00 0.00 NA NA 0.00 K intron_retention Cip4,I_chr3L_4363128_4363769,I_chr3L_4363386_4363987 chr3L - chr3L_4327703_4327772 chr3L_4327702_4327703;chr3L_4327772_4327773 chr3L_4327233_4327702;chr3L_4327773_4327917 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.95 0.00 2.89 1.98 0.00 0.52 0.88 0.00 0.20 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG8001 chr3L + chr3L_1757204_1757321 chr3L_1757204_1757306 chr3L_1756612_1757203;chr3L_1757322_1758146 2.01 1.96 1.47 3.23 2.70 2.82 0.00 2.67 1.87 7.14 5.13 2.06 0.00 4.76 1.61 0.00 6.06 5.08 1.67 1.35 2.44 1.20 2.63 0.00 0.00 3.70 3.57 0.00 2.17 2.82 0.00 2.33 3.17 2.41 1.96 0.00 4.17 0.00 3.85 1.22 4.11 0.98 2.17 1.72 1.33 2.11 2.33 2.01 3.51 0.00 2.60 0.00 2.17 0.00 1.37 0.00 0.00 1.38 K alternative_donor Amun,I_chrX_11607839_11608272,I_chrX_11607842_11608105,I_chrX_11607842_11608125,RI_chrX_11607842_11608272 chrX - chrX_11607839_11608590 chrX_11607839_11608507 chrX_11607788_11607838;chrX_11608591_11608810 64.29 88.89 55.56 66.67 70.00 64.29 56.25 65.22 51.43 NA 75.00 62.07 44.44 64.29 57.14 75.00 71.43 64.71 50.00 62.50 81.82 52.00 71.43 83.33 77.78 61.90 90.91 60.00 68.42 39.29 75.00 46.15 39.66 70.83 66.67 60.00 60.00 62.50 83.33 58.33 64.29 75.00 72.73 50.00 55.56 63.33 60.00 45.45 68.97 60.00 72.73 83.33 61.54 55.56 64.29 90.00 77.78 37.84 K intron_retention I_chr2R_19932706_19933121,gammaSnap chr2R - chr2R_19935974_19936161 chr2R_19935973_19935974;chr2R_19936161_19936162 chr2R_19935858_19935973;chr2R_19936162_19936229 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG5961,RI_chr3R_8285626_8285694,I_chr3R_8285631_8285980 chr3R - chr3R_8285626_8285694 chr3R_8285631_8285694 chr3R_8285695_8285734;chr3R_8285531_8285625 93.75 100.00 NA NA NA NA 90.91 90.91 88.24 NA NA NA NA NA 87.50 75.00 NA NA 100.00 93.75 NA NA 100.00 100.00 NA NA 90.00 100.00 NA NA 100.00 NA NA 92.86 NA NA 90.00 100.00 NA 92.31 NA 100.00 NA 88.89 NA 90.00 NA 90.00 100.00 NA 100.00 100.00 88.89 100.00 NA 100.00 92.86 100.00 N jcn_only_AD Lag1,RI_chrX_6153758_6153930,I_chrX_6153758_6155077,RI_chrX_6153758_6161036,I_chrX_6160907_6161036 chrX - chrX_6153758_6155077;chrX_6153758_6154631;chrX_6153758_6161036;chrX_6153758_6154193;chrX_6153758_6154358;chrX_6153758_6160439 chrX_6153758_6153930 chrX_6153658_6153757;chrX_6161037_6161136 0.28 0.26 0.00 0.46 0.00 0.97 0.64 0.00 0.47 0.75 0.47 0.30 0.34 1.08 0.75 0.69 0.66 0.49 0.00 0.11 0.24 0.00 0.26 0.28 0.00 0.00 0.00 0.27 0.35 0.64 0.50 0.95 0.86 0.18 0.62 0.00 0.13 0.00 0.00 0.61 0.94 1.21 0.34 0.22 0.33 0.54 0.21 0.36 0.33 0.00 0.00 0.00 0.00 0.00 0.23 0.60 0.00 0.00 K intron_retention CG8677 chr2L + chr2L_21223128_21223191 chr2L_21223127_21223128;chr2L_21223191_21223192 chr2L_21222678_21223127;chr2L_21223192_21224563 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 NA 5.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.77 0.00 NA 0.00 0.00 0.00 0.00 NA 2.56 0.00 0.00 NA 0.00 NA 2.94 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K alternative_donor CG17549,R_chr2L_19388305_19388473,RI_chr2L_19388570_19389427,I_chr2L_19388570_19389922 chr2L - chr2L_19388570_19389427;chr2L_19388570_19389764;chr2L_19388570_19389935 chr2L_19388570_19389926 chr2L_19388474_19388569;chr2L_19389936_19390022 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA 20.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 0.00 0.00 NA NA NA NA NA NA NA 0.00 NA N jcn_only_AA HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13164646_13165514;chrX_13164727_13165514 chrX_13164676_13165514 chrX_13165515_13165622;chrX_13164424_13164645 91.94 89.23 93.75 81.74 87.32 88.24 78.46 90.22 92.80 92.68 89.81 91.78 93.33 92.75 88.71 91.05 94.94 90.24 93.08 80.69 88.79 91.94 88.21 94.62 89.17 95.03 90.55 94.87 84.30 90.31 93.63 92.22 93.04 94.19 91.54 80.00 89.27 92.02 85.79 92.03 91.43 94.51 89.12 92.90 93.83 90.07 92.00 92.27 90.68 94.16 92.31 93.62 95.71 95.89 92.95 93.14 87.06 88.70 K jcn_only_AD CG5018,PDCD-5 chr3L - chr3L_16219459_16219686 chr3L_16219459_16219677 chr3L_16219222_16219458;chr3L_16219687_16221520 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD RpL10Ab chr3L + chr3L_11816530_11816757;chr3L_11816666_11816757 chr3L_11816456_11816757 chr3L_11816758_11817314;chr3L_11816300_11816455 98.71 98.77 99.14 99.10 99.03 99.17 98.61 98.99 98.90 98.21 98.59 98.71 98.75 98.63 98.99 98.96 98.94 98.98 98.84 99.01 98.89 96.14 98.09 98.39 98.22 98.99 98.44 96.20 98.56 98.06 95.28 98.67 98.82 98.95 98.42 98.58 98.37 98.37 98.83 98.85 98.04 98.72 99.03 98.28 98.87 98.78 98.12 98.97 97.96 97.93 97.51 97.66 98.87 98.34 99.08 98.21 98.61 99.32 K intron_retention CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8188878_8188931 chr2L_8188877_8188878;chr2L_8188931_8188932 chr2L_8188736_8188877;chr2L_8188932_8189129 1.37 0.00 1.38 1.10 1.32 2.73 1.34 1.79 1.36 1.82 0.00 2.03 0.71 1.37 0.62 0.00 1.19 0.00 2.09 0.72 1.32 1.40 0.72 0.49 3.52 2.65 3.79 11.57 1.91 1.72 2.13 0.00 0.49 2.20 0.85 0.00 1.04 2.68 0.93 2.52 0.00 2.12 1.39 0.99 2.80 1.91 1.16 0.66 2.50 2.75 2.98 0.00 1.39 0.00 2.30 1.59 2.35 0.00 K intron_retention Hsc70Cb chr3L + chr3L_14034623_14035258 chr3L_14034622_14034623;chr3L_14035258_14035259 chr3L_14034527_14034622;chr3L_14035259_14035459 0.00 0.00 NA NA NA NA NA NA 4.00 NA NA NA NA NA NA NA NA 0.00 NA 6.25 NA NA NA NA NA NA 0.00 9.09 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA 0.00 K alternative_donor CG5284,I_chr3L_16086347_16086804 chr3L + chr3L_16083622_16084615 chr3L_16084019_16084615 chr3L_16084616_16084958;chr3L_16083606_16083621 96.99 96.77 92.97 95.03 97.67 95.92 98.73 97.66 95.04 92.42 95.65 96.52 95.40 95.54 99.23 99.40 98.85 97.06 96.99 95.80 98.97 95.62 99.36 95.58 97.67 99.08 97.48 92.77 99.05 96.15 99.24 93.75 95.35 95.48 96.67 98.95 88.97 97.03 96.90 95.92 97.92 94.84 94.38 98.92 92.59 97.30 98.81 96.94 98.91 96.88 97.66 98.73 97.73 97.78 99.18 98.33 97.62 95.65 K jcn_only_AD Pi3K92E,I_chr3R_16459436_16459551,I_chr3R_16459436_16459848 chr3R - chr3R_16459436_16459848;chr3R_16459436_16460267;chr3R_16459436_16460340;chr3R_16459436_16460287 chr3R_16459436_16459551 chr3R_16459336_16459435;chr3R_16460341_16460435 2.78 5.41 0.00 4.23 0.00 6.90 4.92 1.47 1.23 0.00 0.00 5.95 3.12 1.69 1.82 2.67 2.50 2.78 2.27 1.59 0.00 3.45 0.00 4.35 9.68 2.22 4.35 3.57 4.76 4.17 4.08 NA 0.00 3.45 11.43 0.00 0.00 0.00 2.78 0.00 5.00 2.82 3.23 0.00 NA 3.85 0.00 8.82 4.76 NA 1.96 3.03 NA NA 3.92 0.00 4.00 NA K intron_retention CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1525393_1526659 chr3L_1525392_1525393;chr3L_1526659_1526660 chr3L_1525293_1525392;chr3L_1526660_1526731 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 NA 90.91 NA 100.00 NA 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 K jcn_only_AD shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9770053_9781634 chr2R_9770053_9771599 chr2R_9769906_9770052;chr2R_9781635_9782097 88.89 88.37 95.00 87.08 90.59 89.90 96.91 80.62 90.76 73.24 86.30 94.67 88.03 96.43 89.83 90.44 95.35 95.83 87.07 86.60 85.96 80.15 85.29 92.31 87.04 94.95 91.89 95.00 72.73 89.55 82.76 NA 75.00 91.86 92.54 84.38 92.86 93.62 87.36 83.17 70.00 88.44 90.72 86.02 NA NA 88.10 77.78 93.75 NA 88.89 90.74 100.00 NA 88.05 NA NA NA K intron_retention CG3609,I_chr2L_2372744_2372829,RI_chr2L_2373723_2374295 chr2L - chr2L_2372771_2372829 chr2L_2372770_2372771;chr2L_2372829_2372830 chr2L_2372455_2372770;chr2L_2372830_2372898 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 2.63 1.38 1.12 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 1.31 0.00 1.35 0.00 1.58 0.00 1.33 0.97 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 1.72 K alternative_donor slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,RI_chr2R_20289332_20289739,I_chr2R_20289332_20289846,I_chr2R_20289332_20290093 chr2R - chr2R_20289332_20290083;chr2R_20289332_20290093;chr2R_20289332_20289846 chr2R_20289332_20289739 chr2R_20289232_20289331;chr2R_20290094_20290193 42.11 37.50 52.63 55.17 42.86 40.00 47.37 46.51 43.64 60.00 50.00 40.00 50.00 36.36 43.48 46.81 40.00 45.00 45.83 48.89 42.11 39.13 33.33 41.18 46.67 42.11 36.00 42.11 50.00 33.33 37.04 50.00 57.89 43.90 33.33 31.82 43.75 33.33 58.33 35.29 40.00 53.66 36.84 28.57 40.00 31.25 16.67 38.46 39.02 50.00 32.00 31.58 30.00 33.33 44.00 50.00 44.44 36.84 K jcn_only_AD CG2924,I_chrX_2163288_2163676,I_chrX_2163738_2163863,I_chrX_2163738_2164440,I_chrX_2163738_2164560,I_chrX_2168373_2168893 chrX - chrX_2163738_2164731;chrX_2163738_2164670 chrX_2163738_2164440 chrX_2163677_2163737;chrX_2164732_2164736 22.73 NA NA 15.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 22.73 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention sol chrX + chrX_21224091_21225120 chrX_21224090_21224091;chrX_21225120_21225121 chrX_21223780_21224090;chrX_21225121_21225440 61.90 61.54 51.22 79.41 50.00 56.67 62.86 51.28 56.82 61.90 52.38 42.11 41.38 52.17 66.67 78.57 59.09 65.38 83.33 44.19 62.50 84.13 66.67 59.65 57.89 76.00 58.70 54.55 69.77 64.58 47.17 89.47 86.27 64.81 59.38 71.43 59.72 60.78 57.35 72.50 82.61 67.19 70.83 83.78 62.50 74.29 60.00 71.43 57.38 60.87 50.91 61.11 65.38 48.00 70.00 56.67 70.83 86.96 K intron_retention WASp,I_chr3R_24656400_24657416 chr3R - chr3R_24652597_24652668 chr3R_24652596_24652597;chr3R_24652668_24652669 chr3R_24651964_24652596;chr3R_24652669_24652896 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.53 3.92 2.60 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.80 0.00 0.00 2.35 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.76 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG7546 chr3L + chr3L_7508878_7508970;chr3L_7508878_7508967 chr3L_7508878_7508925 chr3L_7508741_7508877;chr3L_7508971_7509150 13.41 12.82 13.51 21.59 12.28 24.24 10.39 16.25 13.44 16.42 7.55 13.79 10.00 17.31 14.47 15.25 5.66 11.11 21.43 20.27 22.22 14.00 8.26 11.49 9.76 16.36 11.11 10.87 13.64 12.05 9.09 13.85 26.88 20.00 13.41 5.15 10.58 10.90 7.33 11.02 14.06 20.31 12.50 6.15 18.29 7.77 14.39 14.29 16.67 10.94 13.33 14.81 7.77 13.22 20.63 8.16 7.86 27.87 K intron_retention dmondo,I_chr2L_21286573_21287203,I_chr2L_21301528_21308287,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579 chr2L - chr2L_21286619_21287203 chr2L_21286618_21286619;chr2L_21287203_21287204 chr2L_21286489_21286618;chr2L_21287204_21287303 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention fdl,RI_chr2R_8394261_8394315 chr2R - chr2R_8394261_8394315 chr2R_8394260_8394261;chr2R_8394315_8394316 chr2R_8394223_8394260;chr2R_8394316_8394415 88.89 NA NA 93.75 NA NA NA NA 91.67 NA NA 71.43 NA NA NA NA NA 73.33 NA 93.33 88.89 NA 90.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 77.78 NA NA NA NA NA NA NA NA 77.78 NA 70.00 80.00 NA NA NA NA NA 88.89 NA NA NA N intron_retention 14-3-3zeta,I_chr2R_5987356_5991764,I_chr2R_5993610_5993957,I_chr2R_5993331_5994971 chr2R + chr2R_5993610_5993828 chr2R_5993609_5993610;chr2R_5993828_5993829 chr2R_5993510_5993609;chr2R_5993829_5993921 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.91 100.00 100.00 100.00 87.60 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG11163,I_chr2R_1666219_1669711 chr2R - chr2R_1666133_1670281 chr2R_1666219_1670281 chr2R_1670282_1670304;chr2R_1666119_1666132 85.71 NA NA 72.41 NA NA 80.95 85.71 80.49 NA NA 88.89 86.21 85.00 NA 88.89 72.73 NA NA 89.19 NA NA NA NA NA NA NA NA NA 65.00 NA NA 90.00 87.88 NA NA NA NA NA 92.31 NA 100.00 NA 92.86 NA 89.66 NA 78.05 85.42 NA NA NA NA NA 84.00 NA NA 80.39 K intron_retention Mlf,noncoding_7111,CEI_chr2R_11826763_11827279 chr2R - chr2R_11825385_11825951 chr2R_11825384_11825385;chr2R_11825951_11825952 chr2R_11825316_11825384;chr2R_11825952_11826483 7.29 6.12 7.50 9.95 4.59 4.96 12.68 7.34 4.86 14.29 15.91 13.53 38.98 7.78 10.09 5.69 8.08 11.25 7.34 8.35 10.75 5.64 6.88 7.41 7.76 7.37 9.71 14.89 13.13 4.39 6.93 4.71 4.71 5.64 6.98 7.29 5.43 4.52 5.80 8.00 7.09 7.04 7.41 4.49 7.81 8.61 9.33 5.91 7.56 5.00 8.72 6.82 3.72 7.14 4.88 5.70 3.77 3.64 K jcn_only_AA asrij,MED23 chr2R + chr2R_18774772_18774832 chr2R_18774772_18774829 chr2R_18774708_18774771;chr2R_18774833_18774897 52.83 59.60 58.49 62.50 52.00 72.41 57.75 45.00 50.79 49.67 52.27 66.33 66.67 40.00 56.90 67.74 66.67 50.00 50.00 52.83 54.76 54.55 49.83 51.26 52.21 53.57 60.29 48.65 51.85 52.10 62.71 52.55 53.38 42.59 60.18 55.73 55.59 52.17 57.28 54.35 59.24 55.14 62.07 48.13 48.70 52.05 49.06 47.33 45.76 54.13 52.38 47.83 59.29 49.53 63.04 58.85 47.98 37.50 K jcn_only_AD chico chr2L - chr2L_10246040_10247024;chr2L_10246040_10246755;chr2L_10246040_10246867;chr2L_10246040_10246899 chr2L_10246040_10246184 chr2L_10245878_10246039;chr2L_10247025_10247051 3.45 0.00 0.00 5.00 12.50 0.00 6.25 4.76 5.62 NA 12.12 6.49 5.13 2.94 0.00 3.85 3.12 0.00 7.69 3.37 9.68 13.95 2.86 2.17 3.33 5.00 2.04 2.44 0.00 2.27 2.08 0.00 2.63 8.47 6.45 8.51 0.00 5.66 7.02 3.70 NA 6.15 5.56 3.28 4.17 2.94 9.38 0.00 6.10 4.88 5.17 3.03 0.00 4.55 0.00 3.33 3.45 0.00 K jcn_only_AD CG4853,CG4866 chr2R + chr2R_13401922_13402084 chr2R_13401924_13402084 chr2R_13402085_13403034;chr2R_13401783_13401921 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.21 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6891,RI_chrX_18670889_18674713,I_chrX_18673576_18674713,RI_chrX_18674227_18674713 chrX + chrX_18670682_18674713 chrX_18670681_18670682;chrX_18674713_18674714 chrX_18670530_18670681;chrX_18674714_18674813 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 100.00 NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA K intron_retention Su(z)12 chr3L - chr3L_19912391_19913253 chr3L_19912390_19912391;chr3L_19913253_19913254 chr3L_19911385_19912390;chr3L_19913254_19914086 28.21 36.00 33.33 0.00 30.00 31.25 21.43 32.00 21.28 9.09 18.75 28.21 14.29 60.00 28.57 38.10 37.50 33.33 50.00 21.13 14.29 10.53 31.25 20.00 21.74 26.32 20.00 4.35 27.27 41.67 28.57 33.33 29.41 21.88 17.86 28.00 24.14 27.27 22.73 39.29 20.00 22.00 36.36 33.33 24.44 40.62 33.33 32.35 32.43 26.47 18.92 31.58 31.82 16.67 44.44 21.43 41.67 39.22 K intron_retention eIF3-S10,I_chr3R_259324_259488 chr3R - chr3R_259324_259420 chr3R_259323_259324;chr3R_259420_259421 chr3R_259224_259323;chr3R_259421_259577 0.38 1.08 0.00 1.27 0.00 0.00 0.00 0.29 0.68 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.54 0.55 0.90 0.27 0.49 0.89 0.82 0.85 0.57 0.00 1.58 0.82 2.36 0.00 0.50 0.00 0.00 0.55 0.56 2.84 0.00 0.00 0.82 0.76 1.83 0.45 0.00 0.00 0.00 0.00 0.00 1.43 0.38 0.57 0.00 1.69 0.00 0.95 0.38 0.66 0.00 0.00 K intron_retention C3G chrX - chrX_6677812_6677922 chrX_6677811_6677812;chrX_6677922_6677923 chrX_6677643_6677811;chrX_6677923_6678587 2.96 2.35 2.94 4.59 4.00 4.86 22.75 2.97 3.63 1.82 6.74 2.92 3.03 1.89 2.48 2.96 1.43 2.45 0.85 2.05 3.70 4.27 3.72 3.94 3.41 2.29 7.84 5.22 9.15 2.67 1.22 4.00 2.66 3.45 2.30 1.15 2.28 2.42 3.05 2.07 5.62 1.95 5.00 1.31 3.23 3.05 0.72 4.05 2.59 3.68 3.15 3.23 2.42 1.94 1.25 2.63 0.00 3.57 K alternative_acceptor bol,I_chr3L_9095908_9105733,RI_chr3L_9117011_9118271 chr3L - chr3L_9100796_9101055 chr3L_9100811_9101055 chr3L_9101056_9101135;chr3L_9100749_9100795 100.00 NA NA NA NA NA NA NA 88.89 NA NA 100.00 NA NA NA NA NA NA NA 90.00 NA 100.00 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA 88.89 NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG14711,CG18764,CG14712 chr3R + chr3R_7450383_7450439 chr3R_7450382_7450383;chr3R_7450439_7450440 chr3R_7450272_7450382;chr3R_7450440_7450550 0.00 NA 0.00 0.00 NA 0.00 0.00 2.94 5.71 NA 0.00 3.23 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 8.70 0.00 0.00 0.00 3.85 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.29 2.86 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 K jcn_only_AA eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20344831_20346544 chr3L_20344831_20345906 chr3L_20344683_20344830;chr3L_20346545_20346686 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K multi_cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27761114_27762991,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27707594_27801169 chr3R_27707594_27771343;chr3R_27771381_27784756;chr3R_27784850_27798223;chr3R_27798276_27801169 chr3R_27771344_27771380;chr3R_27784757_27784849;chr3R_27798224_27798275 chr3R_27707494_27707593;chr3R_27801170_27801219 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 80.00 100.00 100.00 100.00 NA 100.00 100.00 87.50 100.00 83.33 100.00 100.00 NA 80.00 100.00 NA NA 100.00 100.00 NA 80.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 87.50 NA 85.71 NA 100.00 100.00 100.00 77.78 100.00 100.00 100.00 100.00 NA 83.33 NA 100.00 83.33 K cassette east,CR_chrX_1912038_1912737 chrX + chrX_1912038_1912737 chrX_1912038_1912112;chrX_1912243_1912737 chrX_1912113_1912242 chrX_1911938_1912037;chrX_1912738_1912837 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.18 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention qkr58E-1,I_chr2R_18300846_18301656 chr2R - chr2R_18300846_18301605 chr2R_18300845_18300846;chr2R_18301605_18301606 chr2R_18300746_18300845;chr2R_18301606_18301787 6.78 12.12 4.35 10.00 0.00 10.34 15.00 6.90 12.31 12.50 7.41 11.32 22.22 5.56 9.76 31.58 5.26 6.67 7.69 6.56 0.00 6.45 3.57 7.55 0.00 10.53 0.00 4.17 0.00 17.14 5.00 9.09 8.00 4.17 4.65 0.00 2.27 0.00 1.82 6.78 0.00 11.54 9.52 0.00 4.55 7.27 7.69 8.82 8.33 4.26 7.55 0.00 0.00 0.00 12.90 6.25 9.76 10.00 K intron_retention CG7598 chr3R + chr3R_25563240_25563297 chr3R_25563239_25563240;chr3R_25563297_25563298 chr3R_25562570_25563239;chr3R_25563298_25563846 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.80 0.00 0.00 1.12 0.00 0.00 1.06 1.28 0.63 K jcn_only_AA PRL-1,RI_chr2L_16249092_16250080,I_chr2L_16250028_16250080 chr2L - chr2L_16250028_16250080;chr2L_16249707_16250080;chr2L_16249092_16250080 chr2L_16249722_16250080 chr2L_16250081_16250158;chr2L_16248992_16249091 0.00 0.35 0.00 0.60 0.00 0.47 0.00 0.51 0.12 0.00 0.34 0.00 0.00 0.32 0.34 0.00 0.00 0.36 0.00 0.00 0.32 0.00 0.00 0.28 0.00 0.00 0.26 0.85 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.44 0.00 0.38 0.42 0.00 0.00 0.17 0.35 0.00 0.00 0.00 0.47 0.85 0.54 0.00 0.27 0.00 0.00 0.90 0.28 0.00 0.00 0.00 K alternative_last_exon shep,I_chr3L_5177084_5177314,I_chr3L_5193467_5212049 chr3L - chr3L_5154702_5155555 chr3L_5154909_5155555 chr3L_5148960_5154701 chr3L_5154823_5154908 chr3L_5155556_5155643 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RI_chrX_502548_513324,CG13366,I_chrX_505719_505889,I_chrX_508729_508806,I_chrX_509727_511477,I_chrX_510004_511407,I_chrX_513176_513324,I_chrX_513519_513631 chrX - chrX_506067_506124 chrX_506066_506067;chrX_506124_506125 chrX_505890_506066;chrX_506125_506241 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Vha68-2 chr2L + chr2L_12974444_12975613 chr2L_12974443_12974444;chr2L_12975613_12975614 chr2L_12974270_12974443;chr2L_12975614_12975712 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG18659,E_chr2R_5011363_5019110,RI_chr2R_5013572_5014531,I_chr2R_5016147_5016997 chr2R - chr2R_5011651_5014531 chr2R_5011650_5011651;chr2R_5014531_5014532 chr2R_5011194_5011650;chr2R_5014532_5014631 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 NA 96.55 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA NA NA 100.00 NA 100.00 94.12 NA NA 100.00 100.00 100.00 NA 88.89 NA 100.00 100.00 100.00 100.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16106466_16106984;chr3L_16106466_16107411 chr3L_16106466_16106995 chr3L_16106332_16106465 20.97 24.44 14.10 18.67 18.60 21.28 18.67 22.09 25.78 18.00 37.88 19.51 20.41 20.97 18.64 22.64 27.03 13.21 13.89 17.09 39.02 9.09 19.23 24.05 18.75 32.79 18.99 14.00 27.45 14.86 15.94 22.50 22.33 20.99 6.90 16.67 25.21 27.42 25.00 13.76 15.00 24.78 16.67 27.63 22.45 18.33 19.51 23.47 19.09 22.41 23.36 26.79 27.27 21.74 14.93 23.81 23.33 20.37 N intron_retention sax,CG1882 chr2R + chr2R_3700498_3700802 chr2R_3700497_3700498;chr2R_3700802_3700803 chr2R_3699932_3700497;chr2R_3700803_3702250 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 75.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor Uba1,I_chr2R_5579209_5579407 chr2R - chr2R_5579209_5579786 chr2R_5579209_5579407 chr2R_5579109_5579208;chr2R_5579787_5580879 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.20 0.00 0.00 0.00 0.48 1.06 0.27 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.21 0.00 0.00 0.00 0.26 0.00 0.44 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.00 K intron_retention sut1,I_chr2R_3970908_3972035,sut2 chr2R + chr2R_3973590_3973831 chr2R_3973589_3973590;chr2R_3973831_3973832 chr2R_3973487_3973589;chr2R_3973832_3974552 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 1.35 0.00 1.54 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 1.14 K intron_retention Tsp42Ea,CG30159 chr2R + chr2R_2880566_2880625 chr2R_2880565_2880566;chr2R_2880625_2880626 chr2R_2880191_2880565;chr2R_2880626_2881652 51.47 35.71 45.45 60.00 60.00 75.00 66.67 53.33 47.06 46.15 NA 52.94 NA NA NA 35.71 36.36 NA NA 57.14 NA 78.57 53.33 46.15 76.92 75.00 72.22 82.14 61.54 NA 46.67 NA 47.37 50.00 NA 75.00 29.41 28.57 40.00 57.14 92.86 36.84 NA 40.00 50.00 50.00 NA 44.44 47.37 NA 53.85 60.00 60.00 NA 53.33 NA 50.00 50.00 K intron_retention CG15881,RI_chr3L_19799338_19799408,Kap-alpha1 chr3L + chr3L_19799553_19799609 chr3L_19799552_19799553;chr3L_19799609_19799610 chr3L_19799406_19799552;chr3L_19799610_19799732 11.90 6.25 0.00 26.92 0.00 8.33 15.38 15.79 11.29 NA 22.22 16.22 0.00 16.00 11.43 15.56 8.70 5.41 13.79 8.51 10.53 0.00 8.33 16.28 27.78 23.81 15.38 NA 14.29 12.00 22.22 11.90 8.89 8.51 6.90 41.67 17.07 6.25 2.27 12.12 33.33 10.94 10.53 0.00 10.42 12.50 2.44 13.51 12.24 10.81 16.67 13.33 8.00 14.29 15.79 12.07 8.89 7.69 K jcn_only_AA CG31313,REI_chr3R_10392729_10393060,I_chr3R_10394322_10394381,RI_chr3R_10400799_10401492 chr3R - chr3R_10392729_10392886 chr3R_10392747_10392886 chr3R_10392887_10392898;chr3R_10392629_10392728 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA K alternative_donor Dredd,RI_chrX_529342_529426 chrX - chrX_528521_528596 chrX_528521_528578 chrX_528452_528520;chrX_528597_528617 97.06 NA 87.50 100.00 NA NA 90.00 100.00 90.91 NA NA 100.00 NA 85.71 NA 100.00 NA NA NA 90.91 NA 100.00 NA NA NA NA NA NA 100.00 85.71 92.86 100.00 100.00 100.00 NA NA NA NA NA 94.12 90.91 100.00 NA 92.31 100.00 91.67 NA 92.86 94.12 77.78 100.00 NA 100.00 NA 88.89 NA 100.00 100.00 K intron_retention CG3209,I_chr2R_19957751_19959513,RI_chr2R_19957766_19960227,I_chr2R_19959163_19959513 chr2R + chr2R_19957766_19959517 chr2R_19957765_19957766;chr2R_19959517_19959518 chr2R_19957666_19957765;chr2R_19959518_19959528 100.00 100.00 100.00 90.91 NA NA 100.00 100.00 94.44 NA 90.91 94.12 NA 100.00 100.00 100.00 NA NA 100.00 92.00 100.00 100.00 100.00 91.67 100.00 88.89 100.00 100.00 NA NA 76.92 NA 100.00 100.00 NA 88.89 91.67 100.00 92.31 100.00 NA 93.75 NA 90.91 NA NA 88.89 100.00 92.86 100.00 92.31 NA NA NA 100.00 80.00 NA NA K alternative_last_exon CG17490,RI_chr2L_22433057_22433102 chr2L + chr2L_22433057_22433102;chr2L_22433057_22440271 chr2L_22433057_22433109 chr2L_22440272_22441190 chr2L_22433110_22434093 chr2L_22432957_22433056 64.29 73.33 68.42 75.86 62.50 66.67 72.50 72.34 72.92 20.00 60.00 74.19 64.29 75.00 64.29 84.29 75.00 56.25 66.67 78.12 77.78 58.33 50.00 57.89 55.56 30.00 61.54 57.14 28.57 55.56 60.00 63.64 58.33 75.00 73.33 71.43 50.00 62.50 54.55 62.50 60.00 63.33 66.67 54.17 62.50 68.75 64.00 54.55 75.51 83.33 69.57 64.29 61.11 64.29 68.42 64.71 83.33 55.56 K alternative_acceptor CG30122,I_chr2R_14526123_14526189 chr2R - chr2R_14520489_14520558 chr2R_14520492_14520558 chr2R_14520559_14520629;chr2R_14519851_14520488 77.08 78.22 89.19 80.00 73.77 78.26 76.67 78.67 80.43 77.19 74.29 78.07 72.22 75.56 73.58 90.00 79.55 63.93 74.29 78.03 80.00 75.96 80.95 83.64 85.00 84.62 77.34 79.78 73.63 75.23 71.70 74.42 73.33 81.11 76.56 72.97 79.08 72.93 77.39 73.43 81.25 77.08 72.73 76.07 74.53 82.76 75.65 76.81 80.95 77.87 76.16 73.24 73.81 79.82 78.57 77.12 74.82 74.42 K alternative_acceptor CG2698,I_chr3R_3828169_3828941,I_chr3R_3828880_3828941,I_chr3R_3829483_3829715,I_chr3R_3830586_3830981 chr3R + chr3R_3829483_3829555;chr3R_3829483_3829709;chr3R_3829483_3829721 chr3R_3829483_3829697 chr3R_3829383_3829482;chr3R_3829722_3829815 34.15 34.15 40.48 36.51 34.62 35.71 42.86 38.24 32.39 50.00 46.43 39.13 44.12 29.73 45.10 38.33 36.00 47.83 49.02 29.63 39.39 26.19 34.38 26.32 22.73 33.33 43.06 40.74 32.26 33.33 23.19 35.90 10.53 33.85 28.95 31.91 30.00 34.09 35.71 27.85 28.57 38.64 35.00 36.21 23.08 36.51 42.42 29.23 39.19 22.03 30.16 32.50 21.43 28.95 34.62 30.77 28.00 31.91 K intron_retention simj,I_chr3L_10680263_10680313 chr3L + chr3L_10680263_10680337 chr3L_10680262_10680263;chr3L_10680337_10680338 chr3L_10680176_10680262;chr3L_10680338_10680413 0.00 0.00 0.00 2.15 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 1.49 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG4572,FI_chr3R_15689914_15690042 chr3R - chr3R_15689914_15689997;chr3R_15689914_15690046 chr3R_15689914_15690042 chr3R_15689814_15689913;chr3R_15690047_15690114 1.15 0.00 0.00 1.52 0.00 2.47 2.91 0.64 0.77 0.00 2.47 3.76 0.00 5.13 0.85 3.81 1.04 0.00 3.88 1.64 0.00 2.70 2.11 2.56 0.00 1.49 1.33 4.00 0.00 0.00 1.22 0.00 0.00 0.69 3.03 NA 2.82 1.28 1.15 0.00 NA 1.63 0.00 0.00 0.00 0.00 1.52 0.00 1.63 0.00 0.00 0.00 2.78 0.00 2.63 3.70 4.42 2.50 K intron_retention Hr39,I_chr2L_21256047_21256260 chr2L + chr2L_21257258_21257745 chr2L_21257257_21257258;chr2L_21257745_21257746 chr2L_21257112_21257257;chr2L_21257746_21258163 0.00 0.00 0.00 9.09 NA NA NA 0.00 0.00 NA NA 3.70 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA NA 3.33 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA NA N alternative_acceptor Doa,I_chr3R_24715823_24718923,I_chr3R_24747391_24747896 chr3R + chr3R_24747272_24747896 chr3R_24747272_24747336 chr3R_24747081_24747271;chr3R_24747897_24747996 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor Nedd4,I_chr3L_17532828_17532882,I_chr3L_17532828_17533787,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17532837_17533790 chr3L_17532837_17533787 chr3L_17532667_17532836;chr3L_17533791_17533887 6.67 6.25 6.00 14.39 5.06 6.25 11.96 5.13 6.04 6.98 7.41 7.24 5.66 7.25 7.14 1.41 7.81 4.42 6.94 4.19 7.46 20.88 6.38 7.26 4.72 6.59 5.56 4.84 9.57 10.10 6.42 5.77 5.94 4.90 8.43 3.19 8.07 5.00 6.09 7.79 10.20 8.57 3.12 7.69 9.09 8.57 5.17 9.93 4.64 7.50 4.55 7.87 7.27 9.52 6.67 6.45 7.02 4.62 K jcn_only_AD wol chr2L - chr2L_8302333_8302523 chr2L_8302333_8302496 chr2L_8301936_8302332;chr2L_8302524_8302698 0.00 0.00 1.26 0.00 0.00 0.00 0.49 0.00 0.34 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.56 0.00 0.00 0.00 1.08 0.00 0.00 0.00 1.06 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.36 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.41 0.00 K jcn_only_AD lqfR,I_chr3R_18243588_18243830 chr3R + chr3R_18239002_18239082 chr3R_18239006_18239082 chr3R_18239083_18239179;chr3R_18238632_18239001 0.99 1.27 0.00 1.25 0.00 0.00 0.00 1.35 0.76 0.00 0.00 1.82 0.00 0.00 2.00 1.49 0.00 0.00 0.00 1.20 0.00 0.00 1.27 1.09 4.23 0.00 2.15 3.30 1.67 0.87 5.45 1.05 1.72 0.00 1.82 1.23 0.00 2.33 0.83 1.55 2.86 0.93 0.00 0.00 1.92 0.00 2.30 1.20 0.00 0.00 2.68 1.33 1.92 0.00 0.00 0.00 1.33 0.99 K jcn_only_AD CG6695 chr3R + chr3R_20483336_20484042;chr3R_20483291_20484042 chr3R_20483332_20484042 chr3R_20484043_20484133;chr3R_20483238_20483290 80.70 80.70 88.89 90.24 79.17 81.82 91.30 83.87 82.09 85.19 NA 79.49 NA 82.61 NA NA 82.61 80.00 NA 90.16 NA 73.26 87.65 68.33 65.38 NA 83.93 74.19 85.71 82.05 45.00 74.36 79.76 85.29 86.49 86.84 85.06 87.23 72.00 79.45 78.95 77.59 NA 69.01 75.76 73.02 78.57 77.19 86.96 81.16 79.31 78.57 84.62 73.13 86.67 76.56 82.76 79.66 K alternative_acceptor rdgA chrX + chrX_8910362_8911876;chrX_8910362_8911894 chrX_8910362_8911891 chrX_8910158_8910361;chrX_8911895_8912021 0.00 NA NA NA NA 0.00 NA NA 2.94 NA NA 6.67 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA 4.35 NA NA 12.50 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K jcn_only_AA CG2126,RI_chr3R_27601238_27601280,RI_chr3R_27602105_27602308 chr3R - chr3R_27601225_27601280 chr3R_27601238_27601280 chr3R_27601281_27601380;chr3R_27601138_27601224 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 1.33 0.00 0.00 2.08 0.00 0.00 0.00 0.00 NA 0.00 0.00 2.44 NA 0.00 2.94 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 NA 0.00 2.56 0.00 1.82 4.00 0.00 0.00 NA 0.00 2.50 0.00 4.17 0.00 1.56 2.38 3.45 0.00 8.33 0.00 5.00 0.00 1.67 0.00 N cassette Ac76E,I_chr3L_19966672_19966735 chr3L + chr3L_19959557_19962181 chr3L_19959557_19959833;chr3L_19959962_19962181 chr3L_19959834_19959961 chr3L_19959464_19959556;chr3L_19962182_19962311 100.00 NA NA 78.12 NA NA NA 100.00 100.00 100.00 NA 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA NA NA NA NA 100.00 100.00 NA NA 100.00 NA 100.00 NA NA 100.00 NA 100.00 NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 N alternative_acceptor CG18854,RI_chr2L_9789598_9789790,I_chr2L_9789694_9789790,REI_chr2L_9789718_9789790,I_chr2L_9790307_9790615,I_chr2L_9790310_9790556 chr2L - chr2L_9789733_9789790;chr2L_9789694_9789790;chr2L_9789718_9789790;chr2L_9789751_9789790;chr2L_9789598_9789790 chr2L_9789740_9789790 chr2L_9789791_9789832;chr2L_9789594_9789597 8.00 6.67 8.57 8.14 9.52 8.70 5.77 10.17 8.22 10.53 12.50 9.80 9.09 6.45 8.82 10.00 8.33 4.17 6.90 6.15 6.67 13.79 7.84 8.33 12.90 5.56 5.88 8.70 6.90 7.69 8.89 9.52 6.67 7.84 7.69 0.00 5.71 12.50 8.11 6.56 10.71 5.66 7.69 12.12 5.00 6.06 8.00 6.38 12.70 4.35 5.26 6.90 10.53 0.00 10.81 9.09 13.64 8.00 N jcn_only_AD CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4987241_4987906;chr2L_4987298_4987906 chr2L_4987319_4987906 chr2L_4987907_4988048;chr2L_4987159_4987240 0.00 0.00 3.85 0.00 0.00 0.00 1.92 0.00 1.14 0.00 0.00 3.70 0.00 3.70 0.00 0.00 0.00 4.35 0.00 0.00 0.00 2.33 1.69 0.00 0.00 0.00 0.00 NA 0.00 0.00 1.89 3.03 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 3.64 3.23 3.51 0.00 5.36 2.22 0.00 0.00 0.00 4.55 0.00 2.33 3.85 0.00 0.00 K jcn_only_AD l(2)gl,I_chr2L_12929_13559,I_chr2L_12929_13682,I_chr2L_15712_16650,I_chr2L_17208_18260,I_chr2L_17213_21135,RI_chr2L_20021_20830,I_chr2L_20974_21065 chr2L - chr2L_12929_13559 chr2L_12929_13519 chr2L_12829_12928;chr2L_13560_13625 100.00 98.82 99.64 100.00 100.00 98.70 100.00 100.00 100.00 100.00 99.12 99.79 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.78 99.42 100.00 100.00 99.52 100.00 98.18 100.00 100.00 99.49 99.70 97.96 100.00 99.34 99.47 100.00 100.00 100.00 99.48 99.68 98.84 100.00 99.79 100.00 99.09 100.00 99.59 100.00 99.80 99.76 100.00 100.00 100.00 99.24 100.00 100.00 100.00 100.00 99.48 K intron_retention I_chr2L_9944682_9947179,CG13126,I_chr2L_9956225_9956299 chr2L - chr2L_9953048_9953109 chr2L_9953047_9953048;chr2L_9953109_9953110 chr2L_9952758_9953047;chr2L_9953110_9954223 0.00 0.00 0.00 3.85 NA 0.00 0.00 0.00 5.71 NA 0.00 0.00 0.00 NA 0.00 6.45 NA 0.00 0.00 5.00 NA 3.03 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 9.09 0.00 8.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.41 6.25 6.45 NA 2.86 0.00 4.35 0.00 0.00 0.00 N alternative_last_exon FI_chr3R_217971_221193,CG34112,I_chr3R_223384_223429 chr3R - chr3R_217971_219549 chr3R_219491_219549 chr3R_217902_217970 chr3R_219263_219490 chr3R_219550_220119 80.00 NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA NA 50.00 100.00 NA NA NA NA NA NA NA NA 100.00 NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 55.56 NA NA 58.33 NA NA NA NA NA NA NA NA 36.36 K intron_retention Spargel,RI_chr3R_252723_254271,noncoding_14534 chr3R - chr3R_251487_251552 chr3R_251486_251487;chr3R_251552_251553 chr3R_249655_251486;chr3R_251553_252347 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Rox8,I_chr3R_19872211_19872659,I_chr3R_19876189_19876240 chr3R - chr3R_19869868_19869918 chr3R_19869867_19869868;chr3R_19869918_19869919 chr3R_19869258_19869867;chr3R_19869919_19870012 0.00 4.35 0.00 20.00 NA 0.00 16.67 0.00 4.65 NA NA 7.69 NA NA 20.00 NA NA 0.00 NA 2.44 0.00 5.56 0.00 6.90 0.00 0.00 17.65 20.83 NA 0.00 13.33 NA 0.00 0.00 0.00 NA 4.88 0.00 5.71 NA NA 3.85 NA 0.00 0.00 0.00 2.78 0.00 0.00 4.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 K intron_retention Fps85D,I_chr3R_5194729_5194776,I_chr3R_5216796_5218450 chr3R - chr3R_5199598_5216607 chr3R_5199597_5199598;chr3R_5216607_5216608 chr3R_5199501_5199597;chr3R_5216608_5216795 0.00 1.54 0.00 0.00 0.00 0.00 0.00 1.23 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 1.92 0.87 0.00 0.00 0.00 0.00 0.00 0.00 6.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 3.57 0.00 1.04 0.00 0.00 0.00 2.38 0.00 0.00 2.63 0.00 0.00 0.00 0.00 2.56 0.00 0.00 K intron_retention BtbVII,I_chr3L_3150858_3150927,I_chr3L_3151185_3151263 chr3L + chr3L_3150154_3150214 chr3L_3150153_3150154;chr3L_3150214_3150215 chr3L_3149748_3150153;chr3L_3150215_3150842 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.59 2.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,RI_chr3R_27801288_27801517,I_chr3R_27801288_27801596 chr3R - chr3R_27784850_27798223,chr3R_27798276_27805244 chr3R_27784850_27795477,chr3R_27795508_27805244 chr3R_27798224_27798275 chr3R_27795478_27795507 chr3R_27784757_27784849;chr3R_27805245_27805341 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention raw,I_chr2L_8712599_8712673,I_chr2L_8735201_8735693 chr2L - chr2L_8735201_8735721 chr2L_8735200_8735201;chr2L_8735721_8735722 chr2L_8735101_8735200;chr2L_8735722_8735747 65.22 50.00 66.67 65.22 NA 88.89 92.31 63.64 61.90 NA NA NA NA 88.89 70.00 62.50 66.67 NA 71.43 60.87 NA 53.33 62.50 66.67 76.92 NA 50.00 60.00 NA NA 58.33 NA NA 86.67 72.73 NA 47.62 72.73 54.55 NA NA 62.50 NA 54.55 NA NA 60.00 60.00 66.67 73.33 72.22 69.23 NA NA 46.15 77.78 NA NA K intron_retention CG11177 chrX + chrX_13506747_13506808 chrX_13506746_13506747;chrX_13506808_13506809 chrX_13506294_13506746;chrX_13506809_13507262 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG17838,I_chr3R_16623576_16628011 chr3R + chr3R_16623576_16624036 chr3R_16623576_16624012 chr3R_16623476_16623575;chr3R_16624037_16624131 51.02 63.64 43.75 50.88 61.29 44.44 30.00 58.33 45.33 65.00 54.17 63.04 100.00 30.00 46.34 54.05 59.09 36.11 46.67 37.31 37.84 57.14 51.02 76.47 54.17 42.86 60.00 43.75 47.83 42.42 47.83 33.33 50.88 52.94 68.18 78.12 51.11 51.72 45.45 57.14 47.06 48.39 50.00 54.84 33.33 55.56 37.50 65.52 40.91 NA 54.55 57.89 53.33 NA 47.73 25.00 55.56 62.07 K jcn_only_AA TfIIA-L chr3R + chr3R_23080451_23080811 chr3R_23080451_23080737 chr3R_23080351_23080450 2.76 1.56 1.01 4.55 0.00 3.45 4.71 1.75 3.12 2.31 0.00 2.76 3.70 1.52 2.86 0.00 3.64 3.70 1.59 1.79 1.72 8.73 2.65 3.74 2.07 4.62 2.82 12.32 3.70 1.84 0.00 6.48 3.76 1.57 3.57 3.27 7.02 3.30 1.87 3.80 0.00 1.39 1.27 12.08 4.27 1.18 1.97 3.16 2.24 2.44 3.77 4.00 1.66 2.83 3.41 1.29 1.46 0.81 K alternative_donor nrv2,I_chr2L_6791842_6794492,I_chr2L_6793397_6794492,I_chr2L_6793405_6793916,I_chr2L_6793405_6794499,I_chr2L_6793684_6794492 chr2L - chr2L_6793405_6794328;chr2L_6793405_6794316;chr2L_6793405_6794551 chr2L_6793405_6794492 chr2L_6793305_6793404;chr2L_6794552_6794592 100.00 100.00 96.77 97.14 100.00 100.00 90.91 94.44 95.65 100.00 100.00 97.83 100.00 100.00 95.24 97.73 100.00 100.00 96.55 98.48 100.00 100.00 100.00 95.24 100.00 100.00 100.00 NA 100.00 100.00 100.00 96.97 95.89 91.89 100.00 100.00 100.00 100.00 100.00 98.59 94.12 95.83 100.00 100.00 100.00 97.14 100.00 96.40 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 95.58 K intron_retention drongo,I_chr2L_837379_847733 chr2L - chr2L_835106_835214 chr2L_835105_835106;chr2L_835214_835215 chr2L_834974_835105;chr2L_835215_835290 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.84 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention noncoding_5243,l(2)44DEa,I_chr2R_4553577_4562151,I_chr2R_4553817_4565934,I_chr2R_4554300_4563976,I_chr2R_4565692_4565934 chr2R + chr2R_4568227_4568289 chr2R_4568226_4568227;chr2R_4568289_4568290 chr2R_4568054_4568226;chr2R_4568290_4568553 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention mfas,I_chr3R_7811954_7812017,I_chr3R_7818597_7818853,I_chr3R_7818607_7818853,RI_chr3R_7818607_7818970 chr3R - chr3R_7818597_7818970 chr3R_7818596_7818597;chr3R_7818970_7818971 chr3R_7818507_7818596;chr3R_7818971_7818995 46.55 28.57 30.77 25.64 28.00 51.85 83.08 45.16 42.75 44.00 55.10 50.00 47.62 36.36 46.67 43.28 42.65 31.71 41.07 56.63 45.00 15.91 48.39 56.52 61.11 25.00 61.36 63.33 57.89 41.67 39.13 60.00 28.57 46.99 61.11 71.43 43.59 55.56 53.57 36.62 58.33 40.78 45.61 42.86 50.00 44.12 57.14 33.33 42.72 55.88 48.84 50.00 60.00 38.46 46.55 51.85 50.00 33.33 K intron_retention CG31211 chr3R + chr3R_7776507_7776579 chr3R_7776506_7776507;chr3R_7776579_7776580 chr3R_7776149_7776506;chr3R_7776580_7776733 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 1.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9008 chr2L - chr2L_13775186_13775254 chr2L_13775185_13775186;chr2L_13775254_13775255 chr2L_13775152_13775185;chr2L_13775255_13775406 93.78 NA NA NA NA NA NA 88.89 90.00 NA NA 88.89 NA NA NA NA NA NA 90.91 100.00 NA 92.31 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 88.89 100.00 NA NA NA 100.00 90.00 100.00 NA 95.24 NA NA NA NA NA NA NA NA NA 100.00 K alternative_acceptor I_chr3L_3223943_3224313,CG11505 chr3L + chr3L_3232240_3232300 chr3L_3232240_3232297 chr3L_3231909_3232239;chr3L_3232301_3232406 78.26 84.62 88.89 81.03 75.86 81.82 92.00 78.21 85.00 75.00 77.78 75.00 82.05 73.68 85.71 82.35 77.50 87.10 77.78 67.21 78.26 82.93 83.72 87.50 95.00 77.50 82.05 91.30 81.82 73.08 77.50 66.67 76.09 76.81 67.86 88.00 84.62 86.67 79.31 79.55 76.92 73.42 84.00 83.33 72.73 75.00 73.68 65.00 81.25 76.92 83.78 76.00 70.00 77.78 86.36 75.00 78.57 66.67 K intron_retention smt3,I_chr2L_6967327_6967507 chr2L - chr2L_6967386_6967507 chr2L_6967385_6967386;chr2L_6967507_6967508 chr2L_6966677_6967385;chr2L_6967508_6967593 0.00 0.00 0.14 0.12 0.00 0.00 0.38 0.41 0.15 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.41 1.90 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.64 0.00 0.36 0.00 0.00 0.16 0.00 0.00 0.00 0.43 0.00 0.27 0.00 0.00 0.00 K intron_retention CG14646 chr3R + chr3R_216781_216832 chr3R_216780_216781;chr3R_216832_216833 chr3R_216400_216780;chr3R_216833_217833 0.00 0.00 3.12 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.41 3.33 0.00 8.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention AGO1,I_chr2R_9844856_9845327 chr2R - chr2R_9844856_9845466 chr2R_9844855_9844856;chr2R_9845466_9845467 chr2R_9844756_9844855;chr2R_9845467_9845645 7.41 NA 10.00 6.67 NA 7.41 8.70 2.78 15.38 NA NA 5.45 13.04 17.39 5.71 6.67 NA 10.71 0.00 11.29 0.00 19.05 12.50 NA 7.14 7.69 7.69 NA 6.90 3.33 7.41 NA 4.65 15.38 10.53 5.00 NA NA NA 22.58 NA 6.82 15.79 NA NA 10.53 NA 6.25 5.56 NA 14.29 5.56 NA NA 3.12 NA NA 6.67 K intron_retention CG4822,I_chr2L_120081_120199,I_chr2L_120266_120420,I_chr2L_125267_128799,RI_chr2L_126228_126309 chr2L - chr2L_119236_119287 chr2L_119235_119236;chr2L_119287_119288 chr2L_119227_119235;chr2L_119288_119375 10.91 5.36 17.54 15.22 9.43 14.29 26.25 10.83 15.70 NA 17.14 15.79 19.70 8.57 10.26 10.24 10.53 20.00 14.93 13.91 5.88 15.71 30.00 11.67 20.00 15.22 14.67 20.00 30.30 10.87 10.91 6.67 5.71 11.58 6.38 35.82 10.61 7.81 10.91 8.79 26.32 15.53 13.73 7.14 6.67 9.43 6.56 2.70 15.83 12.73 10.23 7.14 9.52 8.33 11.90 8.89 9.26 5.71 K jcn_only_AA CG17683,I_chr2R_18774_18869 chr2R + chr2R_18774_18826;chr2R_18774_18851 chr2R_18774_18869 chr2R_18768_18773;chr2R_18870_18969 3.45 NA NA 4.00 NA NA 0.00 3.45 3.45 NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA 4.17 NA NA NA NA 5.00 NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2629585_2629921 chr3L_2629585_2629913 chr3L_2629141_2629584;chr3L_2629922_2630021 97.08 93.75 98.15 98.04 100.00 93.62 94.83 96.49 96.15 NA 100.00 93.75 93.94 96.36 100.00 99.23 100.00 NA 98.00 97.52 96.43 NA 100.00 NA NA 96.23 92.59 NA NA NA 97.06 100.00 100.00 100.00 91.30 NA 100.00 NA 100.00 96.00 NA 97.73 95.74 95.65 NA 93.94 NA 96.74 97.09 NA 100.00 NA NA NA 95.71 NA NA 100.00 K intron_retention Cam,I_chr2R_8161049_8161270 chr2R + chr2R_8147196_8147544 chr2R_8147195_8147196;chr2R_8147544_8147545 chr2R_8147127_8147195;chr2R_8147545_8147693 97.22 NA NA 88.89 NA NA 100.00 100.00 90.91 NA NA 91.67 NA NA 100.00 83.33 NA NA NA 100.00 NA 100.00 NA NA NA NA NA 100.00 92.86 NA NA 100.00 100.00 90.00 NA NA NA NA NA NA 94.44 90.91 NA NA NA 100.00 NA 100.00 90.91 NA NA NA NA NA NA NA NA 90.00 K intron_retention CG8142 chrX - chrX_17737540_17737601 chrX_17737539_17737540;chrX_17737601_17737602 chrX_17737373_17737539;chrX_17737602_17738469 3.60 2.67 3.90 6.25 3.57 2.50 5.26 3.26 4.76 0.00 11.43 2.36 2.22 3.51 3.33 5.21 0.00 5.56 1.56 3.65 0.00 4.26 2.06 1.06 4.17 5.21 6.86 5.26 12.50 0.00 6.10 3.61 3.45 3.60 4.55 1.41 0.00 2.35 1.72 5.07 5.56 3.48 3.77 0.00 9.41 3.87 6.72 4.30 3.60 3.81 4.17 0.00 3.60 2.52 5.88 2.70 4.35 3.36 K intron_retention Mct1 chrX + chrX_2098743_2098797 chrX_2098742_2098743;chrX_2098797_2098798 chrX_2098542_2098742;chrX_2098798_2099408 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 15.38 0.00 0.00 NA NA 0.00 3.57 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 K alternative_acceptor dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21308996_21310000;chr2L_21309092_21310000 chr2L_21309084_21310000 chr2L_21310001_21310009;chr2L_21308992_21308995 11.76 NA NA 12.50 NA NA 15.38 18.18 11.76 NA NA 15.38 NA NA NA 6.25 33.33 NA 12.50 0.00 NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA 0.00 15.38 NA NA NA NA NA NA NA 6.67 NA NA NA 0.00 NA 13.33 7.14 NA NA NA NA NA 14.29 NA NA 0.00 K intron_retention Adgf-A,Msi,F_chr3L_17749926_17757161 chr3L - chr3L_17747526_17757161 chr3L_17747525_17747526;chr3L_17757161_17757162 chr3L_17746567_17747525;chr3L_17757162_17757241 0.69 1.67 1.06 1.90 1.82 0.00 1.29 0.00 0.60 0.00 1.50 1.18 1.82 0.92 0.00 0.97 0.00 0.00 0.00 0.93 1.30 0.63 2.06 0.69 1.99 0.59 1.57 2.06 0.23 0.00 0.00 0.00 0.81 1.15 0.00 1.56 0.72 1.68 1.23 0.00 0.48 0.54 0.00 0.97 0.31 0.44 0.00 0.89 1.86 0.00 1.49 0.56 0.47 0.00 0.83 1.59 0.00 0.10 K alternative_donor Cdk4,RI_chr2R_12471503_12471656 chr2R + chr2R_12467202_12468346;chr2R_12467432_12468346;chr2R_12467241_12468346;chr2R_12467275_12468346;chr2R_12467225_12468346;chr2R_12467227_12468346;chr2R_12467261_12468346;chr2R_12467039_12468346 chr2R_12467474_12468346 chr2R_12468347_12468520;chr2R_12467030_12467038 3.85 0.00 0.00 3.85 0.00 7.69 6.25 3.33 2.17 0.00 6.67 7.69 0.00 6.25 0.00 3.12 0.00 12.50 4.55 4.08 7.14 7.14 6.67 0.00 12.50 6.67 4.76 0.00 8.33 11.11 5.56 0.00 7.14 2.94 10.00 8.33 0.00 9.09 0.00 5.88 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 4.76 6.67 6.25 0.00 0.00 0.00 5.56 0.00 0.00 8.00 K intron_retention CG31122,CG10864 chr3R - chr3R_14235594_14238483 chr3R_14235593_14235594;chr3R_14238483_14238484 chr3R_14235220_14235593;chr3R_14238484_14238602 0.00 0.00 4.17 3.92 0.00 1.92 5.00 0.00 3.28 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 4.88 0.00 3.06 0.00 0.00 1.59 0.00 2.04 0.00 0.00 6.15 1.83 3.70 0.00 0.00 1.37 0.00 0.00 1.92 2.27 0.00 0.00 2.36 0.00 2.53 3.23 0.00 0.00 1.18 2.70 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG18432,CG34194,cyp33,I_chr2R_13433672_13433749 chr2R + chr2R_13432126_13432326 chr2R_13432125_13432126;chr2R_13432326_13432327 chr2R_13431697_13432125;chr2R_13432327_13432552 12.90 8.33 2.38 19.51 3.12 6.25 17.74 8.51 8.06 14.29 7.41 13.21 NA 10.00 8.11 27.50 4.55 9.09 8.33 11.48 12.00 NA 35.48 6.82 20.00 5.71 16.67 19.05 23.08 NA 6.56 26.32 25.00 7.27 10.53 38.46 15.15 15.00 11.63 15.38 11.76 12.90 0.00 21.74 13.04 14.29 15.15 24.00 3.70 13.64 19.35 13.79 NA 11.54 12.82 15.15 6.67 25.00 K jcn_only_AA CG11739,REI_chr3R_205547_205633,RI_chr3R_205772_205830,I_chr3R_207254_207600 chr3R + chr3R_205547_205649 chr3R_205547_205633 chr3R_205447_205546;chr3R_205650_205733 0.00 1.02 0.00 0.00 1.08 0.00 0.00 0.00 0.47 0.00 0.00 0.00 1.33 0.00 0.64 0.00 0.00 0.92 1.43 0.81 2.13 0.00 0.00 0.91 0.00 1.82 0.00 0.00 1.05 1.49 2.44 0.00 1.32 1.30 1.28 3.33 0.00 0.00 0.00 1.05 1.33 0.50 0.00 0.00 0.00 0.54 0.00 1.20 1.88 0.00 0.00 0.00 0.00 1.28 2.14 0.93 0.00 0.49 K jcn_only_AA wun,RI_chr2R_5291964_5300729,I_chr2R_5297151_5300729,I_chr2R_5297159_5300813 chr2R - chr2R_5291964_5300729 chr2R_5297159_5300729 chr2R_5300730_5300829 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor RpS3A,I_chr4_87364_87465,I_chr4_87533_87717,I_chr4_87549_87717,I_chr4_87549_87769 chr4 - chr4_87533_87673;chr4_87533_87769;chr4_87533_87757 chr4_87533_87717 chr4_87466_87532;chr4_87770_87817 35.98 40.26 36.50 33.61 41.14 35.77 30.79 16.46 43.94 42.16 36.34 26.35 36.33 30.27 26.76 22.23 NA 30.97 27.55 20.20 37.20 32.05 24.89 32.75 41.51 34.78 39.30 31.86 42.54 37.15 56.39 47.80 70.00 38.26 40.32 NA NA 21.93 42.55 43.91 57.34 28.67 20.89 NA 56.53 50.61 40.15 37.22 25.92 48.75 28.52 NA 35.07 36.19 34.33 25.43 31.33 30.97 K alternative_donor Axs,RI_chrX_16575605_16575790,RI_chrX_16575870_16575942 chrX - chrX_16575605_16575942 chrX_16575605_16575790 chrX_16575505_16575604;chrX_16575943_16576042 0.00 0.00 0.00 0.00 0.00 6.67 0.00 2.78 1.92 NA 0.00 3.23 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 2.94 0.00 NA 0.00 5.56 0.00 4.55 0.00 0.00 8.33 NA 0.00 6.67 4.76 0.00 0.00 0.00 0.00 7.14 0.00 NA 0.00 5.56 4.35 0.00 NA 2.63 3.85 3.12 0.00 0.00 6.67 0.00 0.00 0.00 NA N multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2813977;chr2R_2814097_2814174;chr2R_2814327_2816013;chr2R_2816342_2816577;chr2R_2816779_2817753 chr2R_2813978_2814096;chr2R_2814175_2814326;chr2R_2816014_2816341;chr2R_2816578_2816778 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CSN3 chr3L - chr3L_20832441_20832497 chr3L_20832440_20832441;chr3L_20832497_20832498 chr3L_20831949_20832440;chr3L_20832498_20832565 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Hrb98DE,RI_chr3R_24429041_24431183 chr3R + chr3R_24428670_24428733 chr3R_24428669_24428670;chr3R_24428733_24428734 chr3R_24428494_24428669;chr3R_24428734_24429040 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 2.93 1.43 0.48 0.00 0.00 0.19 0.21 0.00 0.00 0.00 0.34 0.00 0.00 0.35 0.21 0.00 0.00 0.00 0.00 0.00 0.82 0.16 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.27 0.00 0.46 K intron_retention shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9787955_9788941 chr2R_9787954_9787955;chr2R_9788941_9788942 chr2R_9787871_9787954;chr2R_9788942_9789041 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 NA 0.00 3.45 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K intron_retention Gel,I_chr3R_63962_64024,I_chr3R_66533_66599 chr3R + chr3R_61871_62274 chr3R_61870_61871;chr3R_62274_62275 chr3R_61844_61870;chr3R_62275_62526 26.86 NA 25.00 NA NA NA NA NA 35.71 NA NA 28.57 NA 14.29 NA 34.62 NA NA NA 20.51 30.77 NA NA NA NA NA NA NA NA NA NA NA NA 27.78 NA NA NA NA NA NA NA 30.43 NA NA NA 14.29 NA NA 25.93 NA NA NA NA NA NA NA NA 25.00 K intron_retention Aldolase,I_chr3R_22083764_22086684 chr3R - chr3R_22081154_22082654 chr3R_22081153_22081154;chr3R_22082654_22082655 chr3R_22080805_22081153;chr3R_22082655_22082854 1.26 0.83 1.49 1.26 0.69 0.91 2.47 1.93 1.53 1.44 0.39 1.66 1.43 1.15 1.33 2.23 1.03 0.83 1.93 1.31 0.99 1.54 0.99 0.84 0.86 1.75 1.03 1.87 8.17 1.05 0.87 2.37 2.23 0.79 1.13 1.37 0.92 0.65 1.00 1.80 2.39 1.11 2.48 1.38 0.82 1.15 0.92 2.30 1.46 0.70 1.36 1.44 0.78 0.96 1.04 1.11 1.30 1.74 K intron_retention CG5522 chr2R + chr2R_12677772_12678243 chr2R_12677771_12677772;chr2R_12678243_12678244 chr2R_12677716_12677771;chr2R_12678244_12679955 17.77 NA NA NA NA NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD exd chrX + chrX_15888639_15888717 chrX_15888648_15888717 chrX_15888718_15890040;chrX_15888380_15888638 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.30 0.00 0.00 0.00 0.94 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 K intron_retention debcl,I_chr2R_2539027_2539493 chr2R + chr2R_2537084_2539493 chr2R_2537083_2537084;chr2R_2539493_2539494 chr2R_2536177_2537083;chr2R_2539494_2539593 0.00 0.89 0.00 3.10 0.00 0.00 0.98 0.00 3.02 0.00 0.00 1.76 0.00 0.00 0.87 0.00 0.00 0.00 0.91 0.00 1.06 1.77 0.00 0.00 0.00 0.00 3.77 2.63 1.98 0.80 0.00 0.00 1.43 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 2.30 0.00 0.00 0.00 0.00 0.00 0.83 0.00 1.15 0.00 K intron_retention Rm62 chr3R - chr3R_1827083_1827279 chr3R_1827082_1827083;chr3R_1827279_1827280 chr3R_1826149_1827082;chr3R_1827280_1827458 0.17 0.00 0.44 0.00 0.26 0.64 0.65 0.47 0.58 0.00 0.62 0.38 0.93 0.51 0.17 0.45 0.51 0.46 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.41 0.41 0.43 0.00 0.00 0.45 0.00 0.00 0.57 0.00 0.28 0.00 0.00 0.00 0.17 0.00 0.37 0.00 0.00 0.31 0.00 0.20 0.00 0.41 0.36 0.16 0.00 0.00 0.00 0.35 1.01 0.00 0.00 K alternative_acceptor bwa,I_chr2L_20069515_20073377,I_chr2L_20073310_20073377 chr2L + chr2L_20069515_20073377 chr2L_20069515_20072353 chr2L_20069415_20069514;chr2L_20073378_20073477 97.44 100.00 96.77 79.31 100.00 100.00 97.96 92.06 98.84 95.45 96.00 93.85 100.00 94.29 92.11 100.00 96.30 90.91 91.43 98.59 95.65 96.59 98.36 96.15 100.00 96.30 97.67 97.44 97.50 100.00 96.77 96.30 96.43 98.18 96.88 88.10 97.96 97.44 97.92 98.15 96.67 98.63 96.00 97.78 97.50 94.23 98.08 93.94 98.25 98.51 100.00 96.67 100.00 97.30 95.24 97.50 98.00 100.00 K intron_retention l(2)s5379,I_chr2L_2229179_2229265 chr2L + chr2L_2229394_2229456 chr2L_2229393_2229394;chr2L_2229456_2229457 chr2L_2229266_2229393;chr2L_2229457_2229575 1.96 2.31 0.00 3.05 3.12 4.04 2.59 0.85 2.61 0.00 3.45 2.27 6.90 3.19 2.07 2.56 2.83 3.17 4.41 2.66 1.53 1.37 0.00 0.00 0.00 3.70 3.00 2.02 0.00 0.00 1.57 1.64 0.00 1.03 0.00 0.00 0.00 2.27 2.56 1.60 0.00 2.95 2.02 0.00 1.44 2.12 1.60 0.88 4.11 0.00 0.75 1.96 0.85 2.15 2.78 0.00 3.85 0.33 K intron_retention Ddip2,I_chr3L_252498_252538,I_chr3L_252776_253313 chr3L - chr3L_252482_252538 chr3L_252481_252482;chr3L_252538_252539 chr3L_252398_252481;chr3L_252539_252638 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 11.11 0.00 0.00 1.59 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 3.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Cp110,I_chrX_21890195_21895316,I_chrX_21900456_21904601 chrX + chrX_21884587_21884677 chrX_21884587_21884674 chrX_21884512_21884586;chrX_21884678_21884730 22.73 22.73 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 21.74 NA NA NA NA NA NA NA NA NA NA 46.43 NA NA NA NA NA NA NA NA NA K alternative_donor sax,CG1882 chr2R + chr2R_3700498_3700785;chr2R_3700197_3700785 chr2R_3700238_3700785 chr2R_3700786_3702250;chr2R_3700011_3700196 0.71 0.00 0.00 1.14 0.00 1.79 0.00 1.08 0.89 1.39 2.17 0.85 2.56 0.00 0.00 1.39 0.00 1.96 1.75 0.66 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.63 0.00 0.99 1.43 0.00 1.28 0.00 0.00 0.00 0.00 0.70 0.71 0.00 0.89 2.44 0.69 0.96 0.82 0.00 0.93 0.92 2.00 0.89 1.41 0.00 0.00 1.54 1.19 1.04 1.27 K intron_retention ZnT63C chr3L + chr3L_3303837_3304601 chr3L_3303836_3303837;chr3L_3304601_3304602 chr3L_3303742_3303836;chr3L_3304602_3304665 82.50 84.21 81.40 90.00 72.00 91.89 82.50 80.43 74.55 83.33 84.00 87.10 81.82 86.21 92.31 92.98 84.00 72.73 94.44 83.33 85.19 57.14 62.07 50.00 80.00 89.29 58.82 75.00 97.50 96.43 80.00 81.82 96.97 83.33 78.12 93.10 47.83 70.59 72.22 88.14 82.76 86.96 83.87 75.00 69.70 82.93 62.50 95.77 87.78 64.29 73.53 62.50 76.47 75.00 90.24 62.50 52.94 96.08 K intron_retention hppy,I_chr2R_15105700_15106080,I_chr2R_15106144_15108248 chr2R + chr2R_15113292_15113351 chr2R_15113291_15113292;chr2R_15113351_15113352 chr2R_15113070_15113291;chr2R_15113352_15113478 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 1.54 0.00 1.53 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.65 0.00 0.00 0.00 0.88 2.27 0.00 2.14 2.88 3.57 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.95 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.15 0.00 0.00 0.00 0.00 K intron_retention Trf4-1,I_chrX_8459198_8459266 chrX + chrX_8460090_8460329 chrX_8460089_8460090;chrX_8460329_8460330 chrX_8459410_8460089;chrX_8460330_8461303 19.61 18.57 15.94 18.99 12.99 19.61 22.06 18.42 20.23 6.56 22.03 16.78 5.17 20.00 16.87 28.30 12.12 20.00 19.72 25.68 19.30 35.44 17.86 19.48 30.77 21.43 30.00 32.79 35.59 24.64 19.67 30.61 24.27 15.79 19.30 34.78 13.60 12.20 14.29 18.67 33.33 17.16 21.74 11.69 20.00 21.88 20.93 28.71 21.70 18.03 17.86 14.00 18.87 27.59 19.23 19.30 14.81 25.76 K cassette CG6767,CREI_chr3L_9679564_9687332,I_chr3L_9682549_9689638,I_chr3L_9682607_9687332 chr3L - chr3L_9682549_9689638 chr3L_9682549_9687332;chr3L_9687559_9689638 chr3L_9687333_9687558 chr3L_9682507_9682548;chr3L_9689639_9689685 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.55 97.06 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 K alternative_donor Stim chrX - chrX_15833274_15834432 chrX_15833274_15834256 chrX_15833070_15833273;chrX_15834433_15834462 4.17 NA 7.69 5.71 NA 5.00 2.00 2.27 4.17 NA NA 8.11 5.71 0.00 0.00 6.00 0.00 NA 2.50 6.82 NA 0.00 0.00 NA NA 3.70 NA NA 6.67 NA 7.32 NA NA 4.17 NA NA NA NA NA NA NA 2.22 4.00 NA 0.00 9.09 NA 6.25 5.41 NA NA 9.09 NA NA 6.90 NA NA 3.23 K intron_retention Lasp,I_chr3L_16671761_16673911,I_chr3L_16671780_16671907,R_chr3L_16672970_16673911,RI_chr3L_16674471_16704042 chr3L - chr3L_16671761_16671907 chr3L_16671760_16671761;chr3L_16671907_16671908 chr3L_16671680_16671760;chr3L_16671908_16672007 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 1.01 0.00 0.72 1.40 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.53 0.00 0.81 1.16 0.40 0.57 0.00 0.00 0.00 0.71 0.00 0.00 0.00 K intron_retention MB8.chr3R.pasa.66,CG1091,I_chr3R_2909743_2909904,I_chr3R_2910029_2910096,RI_chr3R_2910490_2910686,RI_chr3R_2911041_2911135,RI_chr3R_2946518_2946663 chr3R - chr3R_2909743_2909904 chr3R_2909742_2909743;chr3R_2909904_2909905 chr3R_2909729_2909742;chr3R_2909905_2910004 100.00 96.30 100.00 100.00 100.00 95.83 95.83 100.00 98.33 100.00 100.00 100.00 100.00 95.83 100.00 96.88 100.00 100.00 100.00 100.00 100.00 94.74 97.30 97.44 95.65 100.00 97.78 93.75 100.00 93.33 100.00 90.91 94.12 97.22 100.00 100.00 100.00 100.00 97.44 97.37 100.00 97.30 95.83 100.00 100.00 96.43 100.00 94.12 100.00 97.50 97.22 100.00 96.67 100.00 100.00 100.00 97.96 100.00 K intron_retention CG14235,noncoding_24847,CG18809,noncoding_24848 chrX - chrX_19635199_19638294 chrX_19635198_19635199;chrX_19638294_19638295 chrX_19634765_19635198;chrX_19638295_19638317 5.31 5.75 5.98 6.98 5.41 2.58 5.10 4.76 4.56 2.90 3.47 6.20 4.35 5.30 5.79 7.22 5.26 5.75 5.59 7.74 3.51 6.99 6.15 4.65 2.33 4.35 2.72 4.65 11.36 7.14 4.81 5.77 16.67 6.10 7.41 7.35 4.08 2.86 4.98 3.09 8.89 4.60 5.31 3.50 6.00 8.87 4.22 10.45 4.66 8.65 6.67 3.81 5.95 7.87 3.31 4.89 3.11 5.71 K cassette KCNQ,I_chr2R_6034329_6034563,I_chr2R_6039928_6040408 chr2R - chr2R_6033949_6034563 chr2R_6033949_6034212;chr2R_6034329_6034563 chr2R_6034213_6034328 chr2R_6033734_6033948;chr2R_6034564_6034663 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA 85.71 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA 88.89 85.71 NA NA NA NA NA NA NA 100.00 K intron_retention CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1527382_1527438 chr3L_1527381_1527382;chr3L_1527438_1527439 chr3L_1527228_1527381;chr3L_1527439_1527584 0.00 0.00 0.00 5.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 3.70 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention exo84 chr3R - chr3R_21875838_21875892 chr3R_21875837_21875838;chr3R_21875892_21875893 chr3R_21875451_21875837;chr3R_21875893_21876422 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7332,I_chrX_18779996_18780073,RI_chrX_18780777_18780878 chrX + chrX_18781029_18781085 chrX_18781028_18781029;chrX_18781085_18781086 chrX_18780879_18781028;chrX_18781086_18781245 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 NA 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 1.27 2.38 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 K intron_retention CG33558,I_chr2R_2813804_2817753,I_chr2R_2814327_2817753,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2816779_2817327 chr2R_2816778_2816779;chr2R_2817327_2817328 chr2R_2816679_2816778;chr2R_2817328_2817427 3.99 5.00 7.14 6.98 25.00 13.04 12.50 17.65 6.02 0.00 0.00 6.67 0.00 4.17 8.89 6.45 5.71 15.00 6.25 10.00 0.00 3.45 7.81 6.25 5.26 0.00 13.33 NA 0.00 3.03 0.00 2.70 2.82 3.57 6.25 2.22 3.81 0.00 4.35 3.70 0.00 2.56 7.14 4.65 0.00 2.78 0.00 6.78 6.12 2.25 4.88 0.00 2.78 1.92 16.67 0.00 0.00 3.45 K jcn_only_AD RpL31,CG1827 chr2R + chr2R_5474789_5474951;chr2R_5474734_5474951 chr2R_5474844_5474951 chr2R_5474952_5475211;chr2R_5474727_5474733 1.98 1.55 4.10 0.89 2.42 1.25 6.17 1.18 2.13 2.94 1.72 3.35 4.03 5.65 0.92 4.15 1.76 2.20 2.09 1.55 1.40 0.50 3.26 1.98 0.46 1.72 12.24 0.35 6.98 1.06 5.43 0.33 0.48 1.90 1.84 4.43 5.79 5.16 5.71 0.45 2.64 0.82 1.21 1.53 0.49 3.11 5.84 2.12 2.50 1.56 5.68 1.50 1.72 15.94 1.27 5.90 3.56 1.63 K intron_retention Moe,I_chrX_8774434_8791759 chrX - chrX_8768933_8769126 chrX_8768932_8768933;chrX_8769126_8769127 chrX_8768545_8768932;chrX_8769127_8769770 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.44 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.11 0.00 0.00 0.11 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Smg5,I_chr2L_13903932_13904208 chr2L - chr2L_13903932_13904397 chr2L_13903932_13904379 chr2L_13903832_13903931;chr2L_13904398_13904515 0.00 0.00 1.54 0.96 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.82 3.85 0.00 1.82 0.00 0.43 0.00 1.96 0.00 0.00 2.94 2.22 NA 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 K intron_retention CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1525393_1526333 chr3L_1525392_1525393;chr3L_1526333_1526334 chr3L_1525293_1525392;chr3L_1526334_1526398 91.67 91.67 92.31 100.00 100.00 93.75 83.33 93.33 96.67 NA 68.75 36.00 100.00 100.00 92.86 95.00 91.67 92.31 100.00 77.42 87.50 73.33 100.00 91.67 81.82 NA 88.89 NA 90.91 90.00 100.00 NA 90.00 90.91 87.50 80.00 92.31 NA 90.00 88.46 81.82 90.32 100.00 94.74 NA 90.00 92.31 94.12 92.59 83.33 89.47 90.00 100.00 NA 95.24 87.50 90.91 92.31 K jcn_only_AA Nhe2,I_chr2L_21122390_21122912 chr2L + chr2L_21124522_21125346 chr2L_21124522_21125316 chr2L_21124443_21124521;chr2L_21125347_21125439 35.22 46.03 28.40 47.31 45.16 23.81 17.95 28.57 40.74 32.00 29.31 62.88 40.62 44.12 29.33 24.27 33.93 26.98 46.34 36.30 18.84 44.12 36.78 32.39 40.35 48.57 30.34 46.55 45.45 45.00 28.99 NA 34.48 27.10 30.61 49.28 33.73 47.30 39.36 35.96 41.94 38.58 28.30 45.78 41.67 29.82 46.67 44.12 25.79 23.08 41.49 32.65 16.67 54.17 29.33 13.79 26.32 20.51 K intron_retention CG16908,Rpt3R chr3R - chr3R_5578353_5578401 chr3R_5578352_5578353;chr3R_5578401_5578402 chr3R_5577277_5578352;chr3R_5578402_5579502 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 7.69 NA NA NA NA NA 0.00 NA NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 K alternative_donor CG17385,I_chr2R_10298790_10298843 chr2R - chr2R_10298790_10298843;chr2R_10298790_10298847 chr2R_10298790_10298841 chr2R_10298690_10298789;chr2R_10298848_10298916 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 K intron_retention Mlf,noncoding_7111,CE_chr2R_11826384_11826741,CEI_chr2R_11826763_11827279 chr2R - chr2R_11826484_11826541 chr2R_11826483_11826484;chr2R_11826541_11826542 chr2R_11825952_11826483;chr2R_11826542_11826762 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 1.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 3.24 4.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.56 0.00 0.41 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.50 0.00 0.00 K jcn_only_AD l(2)k05819,I_chr2L_4396173_4396266 chr2L + chr2L_4396173_4396809;chr2L_4396407_4396809 chr2L_4396128_4396809 chr2L_4396810_4396906;chr2L_4396073_4396127 47.62 44.79 45.45 31.03 41.80 46.46 35.60 45.22 47.30 51.72 25.00 64.80 53.12 33.00 36.89 40.34 48.65 32.29 25.23 43.35 38.68 53.66 50.00 41.59 53.06 12.93 42.06 14.77 55.14 54.93 49.53 27.45 61.11 43.01 51.52 48.15 51.49 64.76 56.02 47.83 56.76 47.62 34.41 56.76 47.73 48.33 45.83 55.38 42.27 33.33 53.10 44.83 67.39 62.50 36.84 63.46 60.00 68.75 K intron_retention Sap47 chr3R + chr3R_11779978_11780304 chr3R_11779977_11779978;chr3R_11780304_11780305 chr3R_11779880_11779977;chr3R_11780305_11780405 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 3.23 0.00 3.45 1.89 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 5.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA 11.76 0.00 N jcn_only_AD unc-5,E_chr2R_11238100_11240757,I_chr2R_11252444_11252570 chr2R + chr2R_11238100_11244325 chr2R_11243996_11244325 chr2R_11244326_11244514;chr2R_11238000_11238099 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 23.53 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 31.75 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 N alternative_donor RpS27A chr2L + chr2L_10410052_10410240;chr2L_10410157_10410240 chr2L_10410169_10410240 chr2L_10410241_10410467;chr2L_10409711_10410051 0.17 0.14 0.15 0.40 0.10 0.11 0.27 0.32 0.14 0.38 0.08 0.23 0.17 0.18 0.14 0.28 0.18 0.11 0.22 0.15 0.09 0.08 0.13 0.16 0.12 0.07 0.41 0.79 0.24 0.23 0.23 0.20 0.24 0.27 0.16 0.19 0.14 0.14 0.08 0.22 0.16 0.16 0.20 0.15 0.14 0.21 0.10 0.25 0.41 0.24 0.18 0.17 0.23 0.16 0.15 0.17 0.28 0.34 K intron_retention CG2310,I_chr3R_25318474_25319142 chr3R - chr3R_25318474_25318971 chr3R_25318473_25318474;chr3R_25318971_25318972 chr3R_25318374_25318473;chr3R_25318972_25319100 22.73 NA 31.25 21.43 NA 35.71 13.64 20.83 24.14 NA NA 29.03 NA NA 10.53 22.73 25.00 NA 25.00 26.47 NA 14.29 22.73 13.33 NA 41.67 9.52 NA 7.69 NA 11.11 18.75 26.67 23.81 22.73 21.05 27.27 NA 26.32 28.12 NA 21.88 NA NA 16.67 10.53 14.29 28.57 28.57 NA 41.67 NA NA 30.77 22.22 NA 20.00 NA K intron_retention mRpS26 chr3L + chr3L_18099971_18100066 chr3L_18099970_18099971;chr3L_18100066_18100067 chr3L_18099672_18099970;chr3L_18100067_18100527 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 K intron_retention I_chr3L_212783_212843,Kaz1-ORFB,Kaz1-ORFA_Kaz1-ORFB,CG13877 chr3L + chr3L_218196_218279 chr3L_218195_218196;chr3L_218279_218280 chr3L_218127_218195;chr3L_218280_218658 3.45 0.00 NA NA NA NA 5.26 6.90 0.00 NA NA 6.67 NA 0.00 0.00 13.33 0.00 0.00 11.11 6.25 NA NA NA 0.00 NA 0.00 6.67 NA NA 16.67 0.00 NA NA 0.00 NA NA NA NA NA 11.11 NA 7.41 0.00 NA NA 6.67 6.25 NA 5.00 0.00 0.00 NA NA 0.00 NA 11.11 3.45 NA K intron_retention CG11347,I_chr3L_4412551_4417819 chr3L + chr3L_4419263_4419428 chr3L_4419262_4419263;chr3L_4419428_4419429 chr3L_4419184_4419262;chr3L_4419429_4419663 5.00 NA NA NA NA NA NA NA 10.53 NA NA 0.00 NA NA NA 0.00 NA NA NA 5.00 NA NA NA NA NA NA 13.33 0.00 NA NA NA NA NA NA NA NA NA NA 13.33 NA NA NA NA NA NA NA 0.00 NA 6.67 NA NA NA NA NA NA NA NA NA K intron_retention CPTI,I_chr2R_6360956_6365128 chr2R - chr2R_6357391_6357450 chr2R_6357390_6357391;chr2R_6357450_6357451 chr2R_6356978_6357390;chr2R_6357451_6357810 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 1.61 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG2926,I_chr3R_1410401_1410501,I_chr3R_1410558_1410893,I_chr3R_1410841_1410893 chr3R - chr3R_1410401_1410893 chr3R_1410401_1410501 chr3R_1410301_1410400;chr3R_1410894_1410993 1.54 2.78 0.00 7.58 0.00 0.00 1.75 1.56 2.68 10.00 0.00 0.00 2.70 0.00 0.00 0.00 2.78 0.00 0.00 4.00 0.00 3.96 2.47 1.54 0.00 0.00 0.00 3.70 3.92 1.54 0.00 0.00 7.32 0.00 3.45 1.82 2.82 0.00 2.17 0.00 7.32 1.28 3.12 0.00 8.82 3.45 NA 7.27 0.00 NA 5.45 5.41 0.00 NA 0.00 0.00 NA 0.00 K intron_retention CG3008,CG15625 chr2L + chr2L_4883588_4883645 chr2L_4883587_4883588;chr2L_4883645_4883646 chr2L_4883520_4883587;chr2L_4883646_4884339 2.18 0.00 3.61 6.38 9.46 0.00 1.65 3.15 2.07 0.00 0.00 3.64 0.00 1.59 2.33 1.79 3.03 6.41 1.45 2.50 2.70 3.69 2.66 1.75 5.16 8.00 4.62 3.34 6.28 2.19 0.00 2.11 2.03 1.96 0.00 4.00 1.95 1.10 2.06 0.00 2.06 3.80 3.57 2.18 3.85 0.00 0.94 0.77 3.57 2.92 1.85 2.54 2.60 1.01 5.21 0.00 1.48 4.92 K intron_retention Nop60B,RI_chr2R_20063248_20063455,I_chr2R_20063248_20063949,snoRNA:Psi18S-1820,F_chr2R_20073291_20073744 chr2R + chr2R_20063248_20063439 chr2R_20063247_20063248;chr2R_20063439_20063440 chr2R_20063148_20063247;chr2R_20063440_20063714 0.96 0.96 1.20 1.30 0.47 0.87 2.65 0.66 1.15 1.15 2.63 1.19 0.50 0.00 1.82 0.76 1.43 0.82 0.95 0.97 1.05 0.00 1.71 0.99 1.50 0.00 0.81 0.98 0.00 0.00 1.05 1.30 0.00 1.56 1.26 0.77 0.19 0.82 1.11 1.03 1.06 1.03 1.08 0.70 0.67 0.28 0.66 0.00 1.38 1.41 0.93 1.18 0.66 0.63 1.15 0.00 0.66 0.40 K intron_retention Vps20 chr2R + chr2R_18496124_18496188 chr2R_18496123_18496124;chr2R_18496188_18496189 chr2R_18496038_18496123;chr2R_18496189_18496298 0.79 0.00 0.00 0.00 0.00 0.00 0.00 1.26 0.62 0.00 3.39 1.00 1.69 1.47 0.00 0.00 0.00 0.00 2.94 0.75 0.00 2.20 0.82 1.05 1.32 2.13 3.45 0.00 9.09 0.00 4.35 0.82 0.00 0.72 0.00 0.66 0.88 0.00 1.35 2.05 4.21 1.61 0.00 0.00 0.00 1.41 0.79 0.00 1.55 1.45 1.40 0.00 0.87 0.00 2.27 0.00 0.96 1.57 K alternative_donor CG3632,RI_chrX_16195880_16196242 chrX + chrX_16190824_16191682;chrX_16190941_16191682 chrX_16190917_16191682 chrX_16191683_16191751;chrX_16190763_16190823 37.50 37.50 36.36 38.46 40.00 37.50 31.58 40.91 21.74 NA 33.33 47.37 37.50 37.50 58.33 35.00 40.00 33.33 50.00 35.00 22.22 22.22 25.00 37.50 28.57 50.00 37.50 28.57 57.14 28.57 22.22 NA 40.00 47.37 42.86 33.33 14.29 50.00 50.00 42.86 NA 41.18 57.14 25.00 NA 28.57 25.00 22.22 40.00 50.00 45.45 37.50 40.00 NA 33.33 40.00 NA NA K alternative_acceptor Nop60B,AT25722,F_chr2R_20073291_20073744,snoRNA:Or-CD9a,snmRNA:60Ca chr2R + chr2R_20073291_20073744 chr2R_20073291_20073510 chr2R_20073238_20073290;chr2R_20073745_20073751 100.00 NA NA 100.00 NA NA 100.00 80.00 100.00 NA NA 88.89 NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 100.00 K alternative_acceptor Pka-R2,I_chr2R_5911755_5913333,I_chr2R_5911755_5913354,I_chr2R_5911803_5913333 chr2R - chr2R_5911865_5913354;chr2R_5911803_5913354;chr2R_5911755_5913354 chr2R_5911708_5913354 chr2R_5913355_5913433;chr2R_5911703_5911707 53.33 NA 50.00 36.36 69.23 54.55 40.00 58.62 46.15 60.00 45.45 42.11 33.33 58.33 40.00 50.00 55.56 30.00 60.00 48.00 50.00 70.00 58.82 76.92 33.33 14.29 37.50 NA NA 69.23 36.84 NA 81.82 54.84 50.00 44.44 75.00 NA 78.57 63.16 NA 56.67 45.45 63.64 NA 66.67 NA 53.33 43.33 NA 50.00 42.86 NA NA 63.64 62.50 77.78 NA K intron_retention noncoding_22436,RpS6 chrX - chrX_7794323_7794835 chrX_7794322_7794323;chrX_7794835_7794836 chrX_7793889_7794322;chrX_7794836_7795040 0.06 0.02 0.09 0.07 0.04 0.07 0.08 0.13 0.07 0.10 0.08 0.09 0.07 0.07 0.06 0.10 0.13 0.06 0.07 0.06 0.08 0.02 0.02 0.05 0.00 0.09 0.13 0.20 0.02 0.00 0.07 0.04 0.01 0.03 0.02 0.00 0.04 0.03 0.04 0.07 0.03 0.08 0.08 0.04 0.00 0.05 0.03 0.05 0.13 0.09 0.05 0.05 0.06 0.04 0.11 0.06 0.08 0.04 K intron_retention fl(2)d,I_chr2R_9709063_9711788 chr2R - chr2R_9708475_9708540 chr2R_9708474_9708475;chr2R_9708540_9708541 chr2R_9707341_9708474;chr2R_9708541_9708874 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 4.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention dos,I_chr3L_2589746_2592161 chr3L + chr3L_2593802_2593864 chr3L_2593801_2593802;chr3L_2593864_2593865 chr3L_2593561_2593801;chr3L_2593865_2594465 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 5.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor I_chr2L_8029734_8029787,Cka,CG7429 chr2L + chr2L_8030840_8032059;chr2L_8031338_8032059;chr2L_8031036_8032059;chr2L_8031309_8032059 chr2L_8031163_8032059 chr2L_8032060_8032641;chr2L_8030749_8030839 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 1.61 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 K intron_retention CG12065,CE_chrX_8469528_8477573 chrX + chrX_8481559_8481620 chrX_8481558_8481559;chrX_8481620_8481621 chrX_8481291_8481558;chrX_8481621_8482529 0.47 0.21 0.76 0.24 0.00 0.28 0.44 0.85 0.46 0.52 0.52 1.06 0.00 0.70 1.02 0.25 0.32 0.00 0.63 0.47 0.26 0.68 0.72 0.23 0.71 0.00 1.33 2.18 0.00 0.00 0.00 0.34 0.00 0.59 0.00 0.00 0.50 0.50 0.73 0.63 0.71 0.67 0.77 0.23 1.10 1.45 0.66 1.16 0.46 0.90 0.40 0.00 0.42 0.24 0.00 1.06 0.00 1.11 K intron_retention CG2310,I_chr3R_25318474_25319142 chr3R - chr3R_25318474_25319167 chr3R_25318473_25318474;chr3R_25319167_25319168 chr3R_25318374_25318473;chr3R_25319168_25319224 10.04 13.92 16.22 12.35 9.09 13.28 19.59 7.01 8.97 10.71 22.11 12.64 8.54 9.62 11.32 10.34 11.97 8.53 10.48 15.00 19.01 5.92 10.53 9.48 13.14 18.57 10.88 11.11 14.29 8.93 10.00 10.66 19.51 10.33 8.28 7.96 7.19 11.92 7.39 8.64 17.14 9.58 9.92 6.63 9.24 8.90 6.91 20.27 10.04 8.88 10.33 8.55 9.88 8.74 9.80 10.90 5.19 9.59 K intron_retention CG33156 chr2R - chr2R_9439524_9439612 chr2R_9439523_9439524;chr2R_9439612_9439613 chr2R_9439457_9439523;chr2R_9439613_9439932 75.00 NA NA NA NA NA NA 70.00 75.00 NA 88.89 66.67 NA NA 88.89 88.89 NA NA NA 81.25 NA 66.67 81.25 73.33 NA NA 81.82 72.73 72.73 76.92 73.33 NA 40.00 90.00 66.67 50.00 77.78 66.67 68.18 76.92 NA 75.00 NA 88.89 77.78 69.23 66.67 80.00 75.00 73.33 72.73 NA NA 77.78 88.89 77.78 NA NA K intron_retention fwd,I_chr3L_310787_310918,RI_chr3L_319514_319746 chr3L - chr3L_310179_310276 chr3L_310178_310179;chr3L_310276_310277 chr3L_307695_310178;chr3L_310277_310465 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.25 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 K alternative_donor Ilp6,RI_chrX_2226173_2226308,I_chrX_2226173_2226571 chrX - chrX_2226173_2227352;chrX_2226173_2226571;chrX_2226173_2226308 chrX_2226173_2226376 chrX_2226073_2226172;chrX_2227353_2227719 0.00 0.00 2.70 0.00 0.00 0.00 1.37 0.98 0.68 0.00 2.56 1.22 0.00 0.00 0.00 0.00 0.00 2.13 0.00 1.04 0.00 3.12 0.00 0.00 0.00 2.22 0.00 5.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.90 1.59 0.00 0.00 0.00 0.00 1.49 0.00 1.25 0.00 K intron_retention gro chr3R + chr3R_21868626_21868716 chr3R_21868625_21868626;chr3R_21868716_21868717 chr3R_21868588_21868625;chr3R_21868717_21869101 71.43 88.89 NA 93.33 81.82 NA 63.16 93.33 74.07 NA NA 73.91 90.91 66.67 61.54 68.42 NA 50.00 63.64 76.47 NA 50.00 72.22 69.23 88.89 NA 71.43 60.00 72.73 50.00 69.23 NA 54.55 78.95 60.00 73.33 53.85 75.00 71.43 54.17 NA 73.68 NA 83.33 NA 60.00 NA 90.00 61.11 63.64 73.33 91.67 NA NA 80.00 66.67 66.67 55.56 K cassette beta-Spec chrX + chrX_17561772_17562308 chrX_17561772_17562139;chrX_17562191_17562308 chrX_17562140_17562190 chrX_17561603_17561771;chrX_17562309_17562415 1.68 2.67 0.87 1.68 0.95 1.53 1.00 1.40 1.54 1.50 1.00 1.36 2.33 1.05 0.62 0.00 1.16 0.79 1.01 0.74 0.00 23.29 2.06 2.22 2.27 0.81 2.25 9.86 7.30 1.61 0.00 1.31 2.79 1.26 2.59 2.47 2.60 4.35 2.60 2.77 1.80 0.81 1.19 3.31 3.91 1.98 3.08 2.46 0.87 2.52 2.94 2.73 2.14 2.29 0.65 2.44 0.90 1.26 K intron_retention CG7033,I_chrX_8985376_8985442,mir-13b-2 chrX + chrX_8985211_8985442 chrX_8985210_8985211;chrX_8985442_8985443 chrX_8984521_8985210;chrX_8985443_8985542 0.87 1.07 0.89 1.17 0.48 0.25 1.06 1.17 0.65 0.42 0.47 0.53 0.67 0.87 0.86 1.20 0.96 0.41 0.91 1.12 0.95 0.72 1.14 0.53 0.70 1.06 1.62 1.89 0.64 0.58 1.24 0.88 0.13 0.97 0.85 1.42 0.76 0.72 0.60 1.20 0.48 0.67 1.74 0.91 0.43 0.73 1.19 0.42 0.76 1.14 1.18 1.06 1.02 1.06 0.65 1.08 0.65 0.29 K jcn_only_AA Ipk1 chr2R + chr2R_16766404_16766475 chr2R_16766404_16766472 chr2R_16766183_16766403;chr2R_16766476_16766616 69.78 NA 57.14 NA NA NA NA 66.67 NA NA NA 72.73 NA NA 69.57 61.90 NA NA NA 79.31 NA NA NA 64.00 NA NA 73.08 NA 80.00 NA 73.33 NA NA 52.17 NA 70.97 70.00 NA 56.00 62.50 63.64 73.91 NA NA 74.07 77.14 77.78 73.91 NA 65.52 75.00 NA 75.00 66.67 NA 64.00 65.71 69.23 K intron_retention sbr,RI_chrX_10731248_10731484 chrX - chrX_10727642_10727707 chrX_10727641_10727642;chrX_10727707_10727708 chrX_10726848_10727641;chrX_10727708_10728204 0.00 0.00 0.00 0.00 0.00 0.00 3.08 4.49 1.32 0.00 0.00 2.27 0.00 0.00 1.85 2.25 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 1.94 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon CG14235,noncoding_24847,CG18809,noncoding_24848 chrX - chrX_19635199_19638294,chrX_19635236_19638294,chrX_19635202_19638294 chrX_19637712_19638294,chrX_19637740_19638294 chrX_19634608_19635198 chrX_19637634_19637711 chrX_19638295_19638317 2.22 1.97 2.05 3.34 2.38 2.00 3.25 2.64 3.70 1.55 2.08 2.33 3.54 3.04 2.22 2.28 3.60 3.07 3.98 2.76 2.79 6.35 2.61 2.09 1.58 3.09 0.66 1.56 3.45 1.94 2.51 1.53 1.79 3.86 1.86 1.26 2.22 2.38 1.49 2.00 0.97 2.39 2.82 2.28 0.93 1.14 1.79 0.53 4.09 2.65 2.07 3.25 1.69 1.38 2.35 1.77 0.90 0.56 K alternative_donor Aats-pro chr3L - chr3L_2651281_2651341 chr3L_2651281_2651333 chr3L_2651213_2651280;chr3L_2651342_2651593 6.46 0.00 0.00 0.00 0.00 0.00 10.53 0.00 4.65 NA NA 2.86 NA 6.67 3.57 NA 6.25 NA NA 3.23 NA 0.00 12.50 10.00 5.88 NA 6.67 3.70 25.00 16.67 38.46 0.00 3.70 6.67 6.67 0.00 16.00 5.56 7.69 10.00 14.29 7.14 NA 0.00 4.35 13.04 10.53 6.67 5.56 7.14 9.09 7.69 4.55 28.57 7.14 5.26 0.00 15.00 K alternative_acceptor CG7145,I_chr3L_21832928_21833150,I_chr3L_21832932_21833106 chr3L - chr3L_21832928_21834330 chr3L_21832932_21834330 chr3L_21834331_21834464;chr3L_21832832_21832927 100.00 NA 100.00 100.00 NA NA 100.00 100.00 92.31 NA NA 92.31 NA NA 100.00 100.00 NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA 100.00 92.31 NA 100.00 NA 100.00 NA NA 88.89 NA NA NA 93.33 NA 100.00 NA 100.00 NA NA NA 100.00 100.00 NA 100.00 NA NA NA 100.00 87.50 NA 100.00 K jcn_only_AD CG15445,REI_chrX_20988432_20988485,RI_chrX_20988432_20988489,REI_chrX_20988439_20988489,I_chrX_20988439_20988552 chrX + chrX_20988432_20988485 chrX_20988439_20988485 chrX_20988486_20988585;chrX_20988339_20988431 40.74 NA NA 48.00 NA NA 23.81 NA 24.24 NA NA 34.48 NA 40.00 NA 54.55 NA NA NA 42.31 NA 35.71 NA NA NA NA NA NA 57.14 NA NA 35.00 55.00 NA NA NA NA NA NA 20.83 39.13 NA NA NA NA 51.43 35.71 47.37 40.00 40.74 61.90 NA NA NA 40.91 26.09 54.55 41.79 K jcn_only_AA I_chr2L_19644636_19644695,REI_chr2L_19702035_19702145,Nf-YB chr2L + chr2L_19736209_19736289 chr2L_19736209_19736272 chr2L_19736042_19736208;chr2L_19736290_19736580 100.00 100.00 98.57 98.82 97.14 100.00 97.92 100.00 100.00 94.87 94.74 98.89 97.22 97.87 100.00 100.00 100.00 100.00 98.44 97.18 93.33 100.00 98.65 100.00 94.29 98.15 100.00 82.22 97.06 95.45 100.00 100.00 96.88 97.78 100.00 100.00 100.00 98.04 100.00 100.00 100.00 100.00 100.00 98.41 100.00 100.00 100.00 100.00 97.35 98.36 98.65 100.00 100.00 100.00 98.21 95.52 100.00 100.00 K alternative_donor CG34348 chrX + chrX_11234531_11234639 chrX_11234581_11234639 chrX_11234640_11234778;chrX_11234462_11234530 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 3.85 NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 5.56 0.00 5.00 3.45 0.00 0.00 NA NA NA 2.13 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 3.12 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 K alternative_acceptor CycA chr3L - chr3L_11821782_11824826 chr3L_11821785_11824826 chr3L_11824827_11825082;chr3L_11821561_11821781 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 98.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 95.65 100.00 100.00 K alternative_donor CG9795,I_chr3R_151216_151418 chr3R + chr3R_151184_151418;chr3R_151216_151418;chr3R_151180_151418 chr3R_151212_151418 chr3R_151419_151518;chr3R_151116_151179 88.89 90.91 75.00 80.95 100.00 80.00 77.78 93.75 92.59 100.00 80.00 88.24 100.00 83.33 84.62 88.89 81.82 88.89 88.89 90.00 100.00 100.00 94.44 88.89 85.71 87.50 100.00 100.00 71.43 100.00 86.67 88.89 75.00 93.33 90.91 91.67 73.33 90.00 86.67 83.33 100.00 88.89 100.00 85.71 80.00 83.33 93.75 88.89 83.33 77.42 84.62 91.67 91.67 100.00 83.33 84.62 93.33 92.31 K jcn_only_AA CG40042 chr2LHet - chr2LHet_168746_168843 chr2LHet_168796_168843 chr2LHet_168844_169120;chr2LHet_168463_168745 3.66 5.16 2.73 4.68 2.26 5.06 4.09 3.82 4.06 6.08 3.86 3.23 4.33 3.53 2.50 3.30 4.71 3.50 2.84 2.61 1.06 4.43 2.99 4.49 7.04 4.07 3.62 6.05 3.95 3.16 8.42 2.70 3.07 4.55 3.66 2.37 4.17 4.24 3.17 3.01 4.19 3.45 4.29 3.35 1.41 4.46 3.14 3.70 3.66 5.16 4.20 3.95 0.32 2.67 3.01 3.16 3.01 1.76 K intron_retention Sucb chr3L - chr3L_5556496_5556592 chr3L_5556495_5556496;chr3L_5556592_5556593 chr3L_5556366_5556495;chr3L_5556593_5556767 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG1161 chr3R + chr3R_1181665_1182146 chr3R_1181665_1181724;chr3R_1181851_1182146 chr3R_1181725_1181850 chr3R_1181556_1181664;chr3R_1182147_1182246 98.29 97.29 98.37 96.71 98.39 99.51 98.09 98.36 99.12 98.29 98.17 97.87 98.88 98.88 98.53 98.48 99.48 97.20 98.22 97.25 98.58 94.64 98.78 97.11 99.24 98.68 99.10 95.65 100.00 96.14 98.83 96.73 80.42 98.77 99.39 97.73 97.73 98.04 99.09 95.91 98.89 98.09 99.40 99.54 97.59 97.93 100.00 96.67 97.89 97.65 99.52 97.84 97.97 97.01 99.28 98.58 98.70 97.16 K alternative_donor CG8468 chr2R + chr2R_10107548_10114915 chr2R_10108271_10114915 chr2R_10114916_10116800;chr2R_10107405_10107547 100.00 100.00 100.00 92.31 100.00 97.44 100.00 100.00 98.77 100.00 100.00 100.00 100.00 97.06 97.67 98.21 100.00 95.00 100.00 100.00 100.00 97.37 100.00 98.18 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 98.00 100.00 98.73 100.00 98.33 96.67 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Ate1 chr2R - chr2R_16143541_16143940 chr2R_16143540_16143541;chr2R_16143940_16143941 chr2R_16143391_16143540;chr2R_16143941_16144113 14.67 13.79 11.63 15.87 15.15 21.43 6.12 5.26 25.93 15.00 3.12 15.52 15.62 15.38 16.28 26.47 18.52 9.68 3.45 14.67 7.41 26.83 14.58 17.07 17.86 19.51 24.39 12.50 9.80 9.68 18.92 18.18 5.26 16.95 13.33 8.51 11.11 16.67 11.54 15.56 13.79 14.67 7.69 19.57 5.88 13.95 16.13 12.50 15.52 13.56 12.50 16.67 13.04 17.65 17.50 15.38 8.51 13.51 K intron_retention msps,I_chr3R_11877071_11877796 chr3R + chr3R_11885098_11885206 chr3R_11885097_11885098;chr3R_11885206_11885207 chr3R_11884965_11885097;chr3R_11885207_11885406 58.95 63.16 72.73 66.67 50.00 54.55 57.89 59.09 59.09 71.43 75.00 65.38 NA 66.67 46.15 62.50 NA 58.82 50.00 50.00 53.33 65.38 42.42 65.62 68.75 54.55 47.83 54.55 62.50 55.00 NA 57.14 61.11 57.14 58.33 68.18 56.52 50.00 48.00 65.71 62.50 62.96 60.00 58.62 61.54 66.67 46.43 74.07 61.29 50.00 52.00 65.00 50.00 42.86 63.64 55.56 40.74 70.83 K intron_retention Tao-1,I_chrX_19471628_19472934 chrX - chrX_19471628_19473430 chrX_19471627_19471628;chrX_19473430_19473431 chrX_19471528_19471627;chrX_19473431_19473780 6.19 5.71 5.21 2.46 9.26 5.68 3.70 7.02 7.53 6.94 3.39 6.72 2.90 8.70 7.53 4.27 8.00 3.88 6.19 3.54 5.56 23.81 7.45 3.12 8.33 8.64 7.58 10.53 6.86 5.43 7.84 9.09 3.41 4.44 7.48 4.21 7.25 6.45 4.88 12.21 5.26 7.41 4.41 6.94 6.25 4.12 8.89 4.55 5.33 10.26 5.83 8.89 4.26 2.50 6.14 6.67 4.17 2.58 K intron_retention CG2249,RI_chr2R_5937150_5937205 chr2R + chr2R_5937150_5937257 chr2R_5937149_5937150;chr2R_5937257_5937258 chr2R_5937050_5937149;chr2R_5937258_5937305 0.51 0.00 0.51 1.09 0.00 0.28 1.23 0.87 0.96 0.95 1.01 0.60 0.81 0.00 0.51 0.00 0.00 1.47 0.00 0.23 0.00 0.00 0.84 0.72 0.00 0.58 1.06 0.00 0.47 1.26 1.12 0.89 0.00 0.65 0.00 0.95 1.26 1.14 0.67 0.27 0.57 0.47 1.25 0.00 0.36 0.93 0.72 0.38 0.46 0.59 0.42 0.00 0.00 0.00 0.51 0.96 0.78 0.34 K intron_retention CtBP chr3R + chr3R_8837742_8845063 chr3R_8837741_8837742;chr3R_8845063_8845064 chr3R_8837730_8837741;chr3R_8845064_8845536 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 87.50 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA 100.00 K jcn_only_AD Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2629527_2629921 chr3L_2629527_2629913 chr3L_2629427_2629526;chr3L_2629922_2630021 97.03 99.11 96.71 96.56 94.90 95.58 96.36 97.27 96.57 95.92 100.00 97.18 98.27 98.42 95.81 96.63 97.77 98.17 96.99 96.19 99.17 97.06 97.19 95.54 97.35 96.96 97.67 100.00 94.15 97.29 96.12 96.53 98.88 97.03 94.92 97.16 97.22 97.19 98.56 98.39 96.24 96.85 98.77 95.40 96.61 97.64 96.23 96.50 96.87 95.97 97.54 96.25 97.58 97.78 96.95 98.39 98.15 96.90 K intron_retention mRpL27,CG15443 chr2L - chr2L_4459208_4459265 chr2L_4459207_4459208;chr2L_4459265_4459266 chr2L_4458662_4459207;chr2L_4459266_4459429 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 2.70 0.00 14.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11876,CG11877 chr3R + chr3R_24941228_24941288 chr3R_24941227_24941228;chr3R_24941288_24941289 chr3R_24940816_24941227;chr3R_24941289_24941408 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1968 chr2R + chr2R_5175409_5175467 chr2R_5175408_5175409;chr2R_5175467_5175468 chr2R_5175188_5175408;chr2R_5175468_5176531 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 5.56 0.00 2.70 0.00 4.17 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 6.67 9.52 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 8.33 0.00 4.35 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA K intron_retention CG6854,E_chr3L_15091621_15103920 chr3L + chr3L_15099169_15101715 chr3L_15099168_15099169;chr3L_15101715_15101716 chr3L_15099134_15099168;chr3L_15101716_15101745 81.82 NA 66.67 90.91 NA NA 100.00 87.50 78.57 NA NA 88.24 88.89 NA NA 91.67 NA NA NA 61.11 NA NA 81.82 81.82 NA NA 90.91 88.89 85.71 77.78 NA 88.89 77.78 90.00 70.00 72.73 NA 77.78 60.00 90.91 72.22 87.50 NA 81.82 63.64 61.11 87.50 66.67 57.14 73.33 58.82 88.89 NA NA 66.67 81.82 88.89 81.82 K alternative_donor rut,I_chrX_14718760_14718821 chrX - chrX_14718961_14719994 chrX_14718961_14719778 chrX_14718822_14718960;chrX_14719995_14720063 71.43 80.00 NA 75.00 NA NA NA 85.71 50.00 NA NA 66.67 NA 83.33 71.43 88.89 80.00 80.00 NA 55.56 NA NA 62.50 NA NA NA NA NA NA NA NA NA 42.86 72.73 66.67 NA NA NA NA 66.67 NA 77.78 NA 100.00 NA 50.00 NA 60.00 62.50 NA 57.14 NA NA NA 80.00 NA NA NA K jcn_only_AD Syx4,I_chrX_2635555_2635621,I_chrX_2636831_2636971 chrX - chrX_2633579_2633652;chrX_2633579_2633742 chrX_2633579_2635455 chrX_2633330_2633578;chrX_2635456_2635529 82.03 80.00 84.04 88.10 83.87 75.64 84.09 85.11 81.65 40.91 83.33 87.40 72.09 84.29 79.80 84.35 78.87 81.01 82.00 81.82 77.46 90.91 86.15 80.30 82.05 75.00 85.37 88.46 NA 92.00 87.27 79.03 73.79 85.56 80.28 83.33 83.93 78.85 84.42 81.48 86.89 81.87 86.49 94.87 84.30 79.21 77.27 82.02 78.21 89.66 82.09 82.93 65.62 75.00 83.19 75.64 77.78 69.00 K alternative_donor CG32016,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_978516_978914;chr4_978516_978631 chr4_978516_978612 chr4_978478_978515;chr4_978915_978920 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG2371 chrX - chrX_11572383_11572435 chrX_11572382_11572383;chrX_11572435_11572436 chrX_11571619_11572382;chrX_11572436_11572509 8.34 NA NA 14.29 NA NA NA NA 10.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 6.67 NA K intron_retention Karybeta3,I_chr3R_476219_476306 chr3R + chr3R_476457_476520 chr3R_476456_476457;chr3R_476520_476521 chr3R_476307_476456;chr3R_476521_477615 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention akirin,I_chr3L_7363173_7364806,I_chr3L_7363177_7364806,I_chr3L_7363177_7364831,I_chr3L_7363211_7364831,I_chr3L_7363731_7364806,I_chr3L_7364126_7364806,RI_chr3L_7364737_7364806 chr3L + chr3L_7363285_7364806 chr3L_7363284_7363285;chr3L_7364806_7364807 chr3L_7362837_7363284;chr3L_7364807_7364906 0.00 0.00 0.00 1.38 0.00 0.94 0.00 0.00 0.66 0.00 0.90 1.79 2.16 0.00 0.77 0.00 1.72 0.00 0.00 0.94 0.00 1.32 1.76 0.00 0.00 0.00 3.05 2.80 0.00 0.00 0.00 1.15 1.64 1.48 0.00 1.87 0.00 1.80 0.00 1.12 0.00 0.94 0.00 0.00 1.33 0.00 4.88 0.51 0.00 0.83 2.22 0.00 3.03 4.00 1.40 0.00 0.00 0.00 K intron_retention par-1,I_chr2R_15365210_15370456 chr2R + chr2R_15366371_15370456 chr2R_15366370_15366371;chr2R_15370456_15370457 chr2R_15366257_15366370;chr2R_15370457_15370556 0.64 0.00 0.00 4.84 0.00 0.00 2.70 4.17 1.77 5.56 22.22 4.29 0.00 0.00 0.00 0.00 3.23 0.00 0.00 2.25 5.71 3.95 2.60 4.48 0.00 0.00 0.00 2.63 NA 2.17 0.00 0.00 0.00 1.54 2.94 0.00 3.33 2.63 3.45 0.00 NA 1.54 6.06 0.00 0.00 0.00 0.00 NA 1.27 1.92 0.00 5.00 0.00 3.45 0.00 2.94 0.00 0.00 K intron_retention eIF2B-delta chr2R + chr2R_19274141_19274529 chr2R_19274140_19274141;chr2R_19274529_19274530 chr2R_19274016_19274140;chr2R_19274530_19274619 92.86 NA 100.00 93.75 NA 100.00 91.67 92.86 93.75 81.82 90.00 94.74 100.00 88.89 NA 100.00 NA NA 80.00 86.67 NA 83.33 81.25 92.31 100.00 NA 92.31 88.24 94.12 63.64 100.00 69.23 75.00 93.33 NA NA 92.86 100.00 90.00 75.00 100.00 93.75 NA NA NA 81.82 92.86 93.33 100.00 93.33 100.00 100.00 100.00 NA 88.89 100.00 NA 87.50 K multi_cassette CG11299,noncoding_8970,I_chr2R_19602423_19609308,I_chr2R_19619053_19619186 chr2R + chr2R_19601642_19616571 chr2R_19601642_19602203;chr2R_19602423_19609732;chr2R_19610399_19616571 chr2R_19602204_19602422;chr2R_19609733_19610398 chr2R_19601628_19601641;chr2R_19616572_19616757 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 88.89 100.00 100.00 100.00 100.00 K intron_retention Rbp2,I_chrX_16343528_16343906 chrX + chrX_16344634_16345307 chrX_16344633_16344634;chrX_16345307_16345308 chrX_16344568_16344633;chrX_16345308_16345592 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA 7.41 0.00 0.00 NA NA 7.69 NA 2.56 0.00 NA 0.00 4.04 7.69 0.00 0.00 0.00 NA 0.00 NA NA 9.09 NA 0.00 0.00 0.00 0.00 2.90 9.09 NA NA NA 0.00 NA NA NA NA 2.27 K jcn_only_AA None chrU + chrU_1178980_1183262;chrU_1178980_1179142 chrU_1178980_1179256 55.56 NA NA NA NA NA NA NA 65.62 NA NA 63.64 NA NA NA 57.14 NA NA 47.62 61.54 NA NA NA NA NA NA NA NA NA NA 60.00 NA NA 30.77 NA NA NA NA NA 45.00 NA 55.56 NA NA NA NA NA NA 55.56 50.00 NA NA NA NA NA NA NA NA K alternative_acceptor Mnt chrX + chrX_3587966_3592372;chrX_3587966_3592774;chrX_3587966_3592150 chrX_3587966_3592777 chrX_3587244_3587965;chrX_3592778_3593060 5.00 0.00 6.45 5.71 13.04 13.79 9.30 2.63 6.67 12.50 5.00 0.00 5.26 7.69 6.25 0.00 0.00 5.00 0.00 2.00 5.26 3.70 3.45 0.00 5.88 0.00 0.00 0.00 6.25 7.14 7.41 12.50 3.57 4.88 6.25 4.76 7.69 5.88 8.82 5.56 0.00 1.85 4.76 3.70 10.00 0.00 11.11 3.70 7.84 0.00 4.35 6.25 10.00 0.00 6.67 0.00 0.00 14.29 K cassette Prosap,I_chr2R_9956417_9957219,I_chr2R_9963748_9979497 chr2R - chr2R_9954080_9956349 chr2R_9954080_9954751;chr2R_9955190_9956349 chr2R_9954752_9955189 chr2R_9953869_9954079;chr2R_9956350_9956416 99.03 100.00 97.83 98.80 100.00 100.00 100.00 94.74 99.35 96.30 100.00 99.29 95.12 100.00 100.00 97.56 100.00 100.00 100.00 99.29 97.56 99.26 98.87 99.03 97.83 97.50 96.51 100.00 92.19 99.26 96.00 100.00 100.00 96.30 98.80 100.00 99.04 99.14 99.31 97.50 97.83 99.30 97.14 98.94 100.00 98.04 97.78 98.95 100.00 100.00 96.94 100.00 98.84 100.00 98.11 97.73 97.56 96.23 K alternative_donor Lnk,RI_chr3R_21714780_21715376 chr3R + chr3R_21714419_21715376;chr3R_21714788_21715376 chr3R_21714614_21715376 chr3R_21715377_21715476;chr3R_21714271_21714418 72.41 70.59 73.81 78.85 72.41 75.86 68.75 80.60 71.11 47.06 84.00 76.39 81.25 75.00 65.79 77.61 79.41 64.86 73.91 61.86 84.00 67.86 61.82 72.73 70.83 75.68 53.70 57.14 53.57 66.67 63.77 65.22 78.79 77.46 82.14 77.42 50.00 54.05 50.00 71.43 82.61 77.46 77.78 58.97 61.11 85.37 52.38 75.51 76.54 74.07 64.62 72.73 50.00 62.50 81.63 57.14 64.00 79.49 K intron_retention Sirt2 chr3R + chr3R_16154696_16154750 chr3R_16154695_16154696;chr3R_16154750_16154751 chr3R_16154599_16154695;chr3R_16154751_16156637 0.00 0.00 0.00 3.77 0.00 0.00 3.03 1.82 2.56 0.00 0.00 1.37 0.00 0.00 0.00 4.00 0.00 0.00 0.00 2.60 0.00 0.00 9.09 1.54 10.81 0.00 6.35 17.24 14.89 0.00 0.00 0.00 0.00 0.00 0.00 9.76 4.84 0.00 0.00 1.27 11.36 1.35 0.00 0.00 0.00 4.41 3.92 0.00 0.00 0.00 1.92 0.00 2.44 4.00 2.56 2.44 0.00 4.76 K intron_retention ari-1,I_chrX_18026911_18026975 chrX - chrX_18026911_18026992 chrX_18026910_18026911;chrX_18026992_18026993 chrX_18026811_18026910;chrX_18026993_18027075 0.00 0.00 2.27 0.00 2.22 0.00 0.00 2.94 0.00 0.00 3.23 5.88 0.00 2.44 9.30 0.00 0.00 0.00 0.00 1.96 0.00 0.00 4.35 2.56 0.00 5.00 5.26 8.70 16.67 0.00 0.00 7.14 0.00 3.70 0.00 0.00 4.55 3.57 2.56 3.57 0.00 0.00 5.71 0.00 3.33 0.00 0.00 4.88 2.90 0.00 4.44 0.00 4.17 0.00 1.92 0.00 2.63 0.00 K intron_retention CPTI,I_chr2R_6358255_6358734,I_chr2R_6358255_6359122,RI_chr2R_6358779_6358944,I_chr2R_6360956_6365128 chr2R - chr2R_6358779_6359122 chr2R_6358778_6358779;chr2R_6359122_6359123 chr2R_6358735_6358778;chr2R_6359123_6359222 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 2.70 2.70 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 3.92 1.56 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 1.82 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor tws,I_chr3R_5960899_5960978,CG6241 chr3R - chr3R_5959310_5960163;chr3R_5959310_5960101;chr3R_5959310_5959789;chr3R_5959310_5960049;chr3R_5959310_5960182;chr3R_5959310_5960026;chr3R_5959310_5960158;chr3R_5959310_5959679 chr3R_5959310_5960041 chr3R_5958937_5959309;chr3R_5960183_5960224 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.29 0.00 0.00 0.00 7.14 6.67 0.00 10.00 5.88 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 12.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 6.25 0.00 10.00 0.00 0.00 0.00 6.25 0.00 0.00 7.69 K alternative_acceptor CG17514 chr2RHet + chr2RHet_2775916_2775978 chr2RHet_2775916_2775968 chr2RHet_2775909_2775915;chr2RHet_2775979_2776071 88.46 NA 93.75 85.71 NA 90.00 85.29 87.50 80.65 NA 87.50 88.46 88.24 94.74 100.00 92.59 90.91 70.00 84.21 85.71 NA NA NA NA NA 88.89 NA NA NA NA 93.75 NA 100.00 88.46 NA NA NA NA NA 88.89 NA 84.62 90.91 NA NA NA NA 90.91 85.19 NA NA NA NA NA 85.71 NA NA 100.00 K intron_retention fl(2)d,I_chr2R_9709063_9711788 chr2R - chr2R_9709063_9711296 chr2R_9709062_9709063;chr2R_9711296_9711297 chr2R_9708963_9709062;chr2R_9711297_9711975 11.54 13.21 8.70 11.63 17.65 3.85 11.76 25.00 14.29 3.57 7.69 11.29 24.00 17.65 10.71 24.00 10.53 6.67 14.81 12.82 15.00 13.56 17.54 7.46 17.65 25.00 20.00 10.87 10.81 8.47 13.64 13.64 16.67 15.00 7.41 17.07 10.07 5.88 8.64 18.75 NA 10.94 0.00 8.33 9.38 0.00 13.33 22.22 20.41 6.67 11.67 10.00 8.70 10.34 11.54 5.63 6.45 NA K intron_retention Klc,I_chr3L_12741058_12741155,I_chr3L_12741783_12742943,I_chr3L_12741838_12743062 chr3L - chr3L_12741042_12741155 chr3L_12741041_12741042;chr3L_12741155_12741156 chr3L_12740958_12741041;chr3L_12741156_12741255 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA sgg,I_chrX_2528059_2528637,I_chrX_2528131_2535622,RI_chrX_2528212_2535830,I_chrX_2528367_2535622,I_chrX_2528472_2535622,I_chrX_2529065_2563945,I_chrX_2536127_2563666,I_chrX_2563342_2563666,I_chrX_2565856_2566099,I_chrX_2566157_2566946 chrX + chrX_2528059_2528859;chrX_2528059_2528868;chrX_2528059_2535830 chrX_2528059_2535622 chrX_2528052_2528058 77.42 63.64 75.00 76.09 NA NA 59.18 93.75 81.82 NA NA 82.14 86.21 77.42 77.78 82.35 NA 50.00 80.56 79.17 NA NA 67.74 59.09 NA 80.00 NA NA NA 70.00 76.47 NA 50.00 88.10 NA NA 60.00 NA NA 60.87 NA 79.55 89.29 NA NA NA NA NA 81.25 NA 75.00 72.73 NA NA 90.91 NA NA NA K mutually_exclusive Nopp140,I_chr3L_21828330_21828566,I_chr3L_21828986_21829082 chr3L + chr3L_21827930_21828566,chr3L_21828986_21829082 chr3L_21827930_21828170,chr3L_21828330_21829082 chr3L_21828567_21828985 chr3L_21828171_21828329 chr3L_21827465_21827929;chr3L_21829083_21829182 24.49 27.70 26.42 29.38 19.35 25.47 34.07 31.33 23.95 18.52 29.87 21.57 30.00 31.71 20.77 31.87 23.17 25.00 23.91 33.82 21.11 6.15 28.33 24.17 30.60 26.67 38.64 28.84 19.51 19.14 25.77 17.73 14.68 26.19 20.00 27.81 26.73 21.62 24.49 19.88 20.15 21.88 24.49 22.10 21.31 23.08 30.30 14.81 27.94 24.22 27.75 27.84 24.41 30.16 24.43 27.10 36.79 20.77 K alternative_donor ena chr2R + chr2R_15029330_15029711;chr2R_15029276_15029711 chr2R_15029352_15029711 chr2R_15029712_15029859;chr2R_15029150_15029275 34.15 40.74 45.71 37.29 30.56 34.38 46.27 59.02 37.78 20.00 34.78 37.36 37.84 34.78 34.15 28.17 41.46 48.00 48.98 30.77 36.67 26.67 34.15 28.12 50.00 50.00 28.89 16.67 40.00 13.79 31.91 33.33 23.81 40.54 25.00 32.43 33.33 33.33 40.91 32.50 46.15 41.18 46.51 32.26 25.00 23.81 22.22 36.36 34.07 38.89 21.28 24.14 21.05 23.08 45.28 34.78 20.00 17.65 K jcn_only_AA Eph,I_chr4_631523_634240,I_chr4_632065_634240,I_chr4_632433_632707,I_chr4_632433_632988,I_chr4_639690_640473,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_632433_634240 chr4_632433_632707 chr4_632353_632432;chr4_634241_634340 1.64 0.00 0.00 3.75 0.00 2.08 1.32 0.00 0.77 0.00 0.00 1.80 6.15 3.57 3.17 0.99 1.64 0.00 0.00 4.35 0.00 NA 2.67 0.00 0.00 1.64 2.50 NA NA 11.11 0.00 NA NA 3.57 8.00 8.00 0.00 0.00 0.00 2.63 NA 4.08 1.92 0.00 NA 0.00 NA NA 2.70 NA 1.72 2.78 NA NA 1.82 13.33 NA NA K intron_retention drongo,I_chr2L_837379_847733 chr2L - chr2L_834584_834973 chr2L_834583_834584;chr2L_834973_834974 chr2L_833661_834583;chr2L_834974_835105 2.27 1.28 3.12 1.80 2.08 2.00 4.20 3.94 1.80 4.85 5.48 2.15 6.49 2.67 4.95 2.27 3.45 0.00 1.20 2.10 0.00 1.10 1.99 1.59 3.48 4.88 3.55 3.61 13.39 1.53 0.00 3.81 1.03 1.28 1.35 2.16 2.24 1.45 1.81 2.54 2.04 2.56 2.70 2.99 2.55 0.00 2.76 0.00 3.01 3.02 2.29 1.94 1.25 2.91 2.54 2.88 3.38 2.08 K cassette CG9171,I_chr2L_5771210_5773014,RI_chr2L_5792418_5799117,I_chr2L_5799412_5800043 chr2L - chr2L_5771210_5799117 chr2L_5771210_5787964;chr2L_5787985_5799117 chr2L_5787965_5787984 chr2L_5771110_5771209;chr2L_5799118_5799211 45.45 NA NA NA NA NA NA NA 45.45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 45.45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention vari,I_chr2L_20792267_20794059 chr2L - chr2L_20790053_20790124 chr2L_20790052_20790053;chr2L_20790124_20790125 chr2L_20789721_20790052;chr2L_20790125_20790335 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG7609,I_chr3R_25574492_25574541 chr3R - chr3R_25569455_25569510 chr3R_25569458_25569510 chr3R_25569511_25569843;chr3R_25569446_25569454 89.56 89.66 80.00 94.29 NA NA 73.08 86.67 97.87 NA NA 89.47 95.65 90.91 90.32 85.11 70.83 95.00 82.86 94.64 91.67 90.91 84.21 88.57 90.48 93.55 89.66 NA 75.00 89.29 84.00 95.00 83.33 94.59 95.83 NA NA 85.19 95.83 88.64 90.48 85.71 80.00 92.68 NA 95.45 90.00 87.88 90.70 93.10 93.75 85.71 85.00 NA 76.92 82.61 82.76 85.19 K multi_cassette Nipped-B,I_chr2R_583116_587893,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_583116_587893 chr2R_583116_586007;chr2R_586502_586563;chr2R_586657_587893 chr2R_586008_586501;chr2R_586564_586656 chr2R_583016_583115;chr2R_587894_587993 98.51 98.33 98.72 83.58 100.00 100.00 98.25 99.41 97.42 97.50 100.00 95.10 100.00 96.39 98.59 99.32 98.67 96.43 97.03 99.34 100.00 97.30 98.02 98.51 100.00 94.23 98.88 96.72 96.00 100.00 96.67 100.00 100.00 99.40 98.51 96.97 100.00 97.67 100.00 99.06 97.50 96.15 97.53 97.75 84.62 98.31 97.56 100.00 99.40 97.62 100.00 100.00 96.55 100.00 98.72 100.00 97.83 98.33 K alternative_donor CG7611,I_chr3L_21516702_21517821 chr3L + chr3L_21516330_21517821;chr3L_21516399_21517821;chr3L_21517168_21517821;chr3L_21516722_21517821;chr3L_21516501_21517821;chr3L_21516918_21517821;chr3L_21516343_21517821;chr3L_21516728_21517821 chr3L_21516706_21517821 chr3L_21517822_21517920;chr3L_21516311_21516329 20.00 25.00 18.18 0.00 0.00 14.29 30.43 9.09 20.00 0.00 0.00 11.76 0.00 18.18 22.22 15.38 16.67 7.14 22.22 29.17 18.18 16.67 25.00 37.50 50.00 40.00 50.00 22.22 23.08 33.33 25.00 0.00 15.38 16.67 20.00 25.00 40.00 33.33 28.57 19.05 50.00 18.52 12.50 15.38 25.00 16.67 20.00 22.22 18.18 25.00 20.00 20.00 0.00 0.00 18.18 60.00 33.33 0.00 K intron_retention RpS3A,I_chr4_87364_87465,I_chr4_87533_87717,I_chr4_87549_87717,I_chr4_87549_87769 chr4 - chr4_87533_87673 chr4_87532_87533;chr4_87673_87674 chr4_87466_87532;chr4_87674_87863 100.00 100.00 99.98 99.99 100.00 100.00 100.00 99.98 100.00 100.00 100.00 99.99 100.00 100.00 99.98 99.99 100.00 100.00 100.00 99.99 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.96 99.96 99.95 99.98 100.00 100.00 99.99 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.99 99.98 100.00 100.00 100.00 100.00 99.98 100.00 100.00 99.97 100.00 99.97 100.00 100.00 100.00 100.00 100.00 K intron_retention MEP-1,CG42245,noncoding_10195,CG1143 chr3L + chr3L_2640272_2640336 chr3L_2640271_2640272;chr3L_2640336_2640337 chr3L_2640026_2640271;chr3L_2640337_2640516 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 K jcn_only_AA CG7081,I_chr3L_8332291_8332360,DNApol-alpha50 chr3L + chr3L_8332291_8332360 chr3L_8332291_8332356 chr3L_8332275_8332290;chr3L_8332361_8332424 98.00 NA 100.00 94.87 NA NA 97.87 94.74 100.00 NA NA 96.97 NA 95.24 96.55 96.23 NA NA 97.44 98.00 NA 95.24 NA NA NA 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA NA NA 100.00 100.00 100.00 100.00 NA 100.00 NA 95.83 NA 96.67 100.00 NA 100.00 NA NA NA 100.00 NA 95.12 97.67 K jcn_only_AA l(2)tid chr2R + chr2R_19596011_19596157 chr2R_19596011_19596152 chr2R_19594625_19596010;chr2R_19596158_19596758 90.83 89.02 91.38 92.31 87.76 90.70 87.18 88.24 90.43 88.00 96.36 94.00 100.00 88.57 76.81 92.11 86.84 90.74 91.49 89.22 95.83 92.31 90.70 84.85 91.23 93.02 98.11 90.28 96.94 86.21 85.29 86.67 89.54 93.10 94.12 88.89 93.18 91.55 87.88 88.19 91.51 89.83 93.02 91.11 88.80 88.07 90.83 91.07 92.41 93.15 94.52 92.68 89.47 95.08 91.30 96.04 89.61 81.98 K alternative_acceptor CG32016,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_974433_974645 chr4_974526_974645 chr4_974646_974852;chr4_974139_974432 97.56 91.49 95.12 95.45 100.00 96.67 98.61 98.00 96.30 94.74 100.00 97.53 100.00 97.50 100.00 98.75 98.00 96.97 100.00 98.91 100.00 97.50 96.77 100.00 96.67 100.00 93.75 95.65 96.15 100.00 98.11 95.24 95.65 98.85 100.00 93.18 96.88 96.88 97.56 98.67 100.00 97.83 100.00 100.00 92.00 97.56 97.50 97.56 99.04 95.16 98.21 95.24 100.00 100.00 98.25 97.37 98.04 97.50 K alternative_donor CG31301,I_chr3R_11172776_11172930,RI_chr3R_11173123_11173185 chr3R + chr3R_11173123_11173185 chr3R_11173128_11173185 chr3R_11173186_11173254;chr3R_11173059_11173122 100.00 100.00 93.75 97.06 100.00 92.86 100.00 97.37 97.44 100.00 100.00 97.14 93.33 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 93.65 100.00 100.00 100.00 100.00 100.00 95.83 100.00 96.77 97.14 100.00 100.00 100.00 96.30 100.00 100.00 97.62 100.00 96.00 94.12 94.44 95.24 96.43 100.00 100.00 98.94 K cassette Arf51F,I_chr2R_11210733_11210953 chr2R + chr2R_11210247_11210953;chr2R_11210218_11210953;chr2R_11210536_11210953 chr2R_11210218_11210628,chr2R_11210536_11210628,chr2R_11210247_11210628;chr2R_11210647_11210953 chr2R_11210629_11210646 chr2R_11209979_11210217;chr2R_11210954_11211053 10.91 13.01 9.21 12.43 10.00 10.91 13.51 11.28 11.76 10.71 10.19 28.76 15.53 10.00 10.53 10.84 14.85 6.85 10.42 11.82 7.38 8.86 13.74 12.30 17.07 16.10 16.35 8.00 9.17 10.40 9.23 9.42 8.54 13.59 8.27 28.21 12.05 11.11 8.62 12.45 13.33 11.74 12.62 12.17 14.38 8.80 10.89 7.66 10.26 8.33 8.97 12.63 8.55 9.90 13.71 13.18 11.36 5.48 K intron_retention CG5098 chr2R + chr2R_13987111_13987179 chr2R_13987110_13987111;chr2R_13987179_13987180 chr2R_13984553_13987110;chr2R_13987180_13988546 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 8.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA CG40467,RI_chr3LHet_770101_770152,I_chr3LHet_771023_771113,RI_chr3LHet_771455_771626 chr3LHet - chr3LHet_787757_789080;chr3LHet_787974_789080 chr3LHet_722704_789080 chr3LHet_789081_789255;chr3LHet_722418_722703 0.00 0.00 0.00 0.00 NA 4.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 K jcn_only_AD CG12163,CG33293,I_chr3R_1068862_1077145,RI_chr3R_1069977_1077139 chr3R - chr3R_1065342_1077145 chr3R_1065342_1077139 chr3R_1065214_1065341;chr3R_1077146_1077239 1.24 1.26 1.94 1.08 1.69 1.08 2.17 1.91 1.88 0.42 0.00 1.25 1.42 1.07 0.63 1.24 0.70 2.02 1.69 1.37 0.29 1.88 1.25 1.51 1.10 1.04 2.87 1.97 2.41 1.29 0.75 0.45 0.56 1.59 1.24 1.91 1.01 1.71 0.43 0.45 1.74 1.77 1.55 1.36 1.03 1.36 0.53 0.55 0.77 0.00 0.93 0.82 1.19 1.26 0.21 0.35 1.12 0.99 K alternative_last_exon Idh,I_chr3L_8351006_8351949,I_chr3L_8351036_8351655 chr3L - chr3L_8351006_8351949 chr3L_8351816_8351949 chr3L_8348244_8351005 chr3L_8351656_8351815 chr3L_8351950_8351962 57.14 60.00 28.57 28.57 66.67 25.00 57.14 58.33 63.64 55.56 50.00 87.50 33.33 50.00 50.00 66.67 50.00 40.00 28.57 77.27 42.86 44.44 80.00 69.23 75.00 25.00 85.71 57.14 44.44 66.67 40.00 60.00 44.44 50.00 66.67 58.33 75.00 50.00 57.14 75.00 50.00 87.50 50.00 66.67 33.33 42.86 66.67 54.55 77.78 50.00 70.00 75.00 50.00 33.33 60.00 55.56 71.43 70.00 K intron_retention CG31619,I_chr2L_21725446_21728027 chr2L + chr2L_21727574_21728027 chr2L_21727573_21727574;chr2L_21728027_21728028 chr2L_21727423_21727573;chr2L_21728028_21728127 3.85 4.05 4.17 13.85 0.00 5.88 7.32 8.11 5.37 6.25 NA 4.59 NA 8.47 8.33 6.67 7.55 5.26 0.00 7.69 0.00 3.70 2.35 0.00 0.00 4.11 1.82 0.00 0.00 3.85 8.22 0.00 3.36 5.45 4.17 4.44 1.02 0.00 2.78 4.21 0.00 4.24 6.82 1.02 0.93 3.12 1.23 4.76 5.15 1.79 3.85 6.98 0.98 1.22 3.90 1.49 2.15 0.72 K jcn_only_AD Vap-33-1 chrX + chrX_3843406_3845447 chrX_3843747_3845447 chrX_3845448_3845600;chrX_3843337_3843405 100.00 100.00 100.00 100.00 100.00 100.00 99.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG1647 chr3R + chr3R_24646228_24646293 chr3R_24646240_24646293 chr3R_24646294_24646440;chr3R_24645947_24646227 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N alternative_donor spir,I_chr2L_20334199_20334626,I_chr2L_20336550_20339058 chr2L + chr2L_20334731_20336286 chr2L_20334851_20336286 chr2L_20336287_20336404;chr2L_20334627_20334730 1.63 1.37 1.27 0.85 0.00 0.00 1.63 0.76 1.15 1.27 1.59 0.00 1.79 4.29 3.08 1.12 0.00 0.00 2.60 0.66 2.13 1.26 2.27 3.80 2.50 1.30 5.41 3.65 9.15 1.80 2.42 1.79 0.81 0.88 4.48 3.61 1.94 1.92 4.84 0.42 1.85 0.68 0.00 0.78 1.64 2.44 3.57 1.51 1.35 3.19 1.32 3.77 2.22 4.65 1.12 1.61 3.53 1.38 K intron_retention Stat92E,I_chr3R_16367780_16376442,I_chr3R_16367780_16377802,I_chr3R_16367815_16368548,att-ORFB chr3R - chr3R_16367276_16376442 chr3R_16367275_16367276;chr3R_16376442_16376443 chr3R_16366245_16367275;chr3R_16376443_16376542 0.00 0.00 0.00 0.00 0.00 0.00 1.77 0.79 1.37 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 6.82 0.00 0.45 0.00 9.09 0.74 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Lasp,I_chr3L_16671761_16673911,R_chr3L_16672970_16673911,RI_chr3L_16674471_16704042 chr3L - chr3L_16673033_16673911;chr3L_16672970_16673911 chr3L_16672574_16673911 chr3L_16673912_16674011;chr3L_16671908_16672573 0.00 0.00 0.00 0.00 0.50 0.58 0.00 0.00 0.16 0.29 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.16 0.61 0.00 0.10 0.00 0.32 0.00 0.11 0.24 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.24 0.38 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 K jcn_only_AD CG2789 chr2L + chr2L_560306_560369 chr2L_560311_560369 chr2L_560370_560522;chr2L_560097_560305 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor alpha-Man-II chr3R + chr3R_5238530_5238585 chr3R_5238530_5238582 chr3R_5238326_5238529;chr3R_5238586_5239112 37.50 38.46 NA 33.33 33.33 NA 33.33 33.33 37.50 NA NA 41.18 NA NA 30.77 NA 41.67 NA NA 27.78 NA 55.56 31.58 50.00 NA 38.46 35.00 42.11 45.45 35.71 NA NA 36.36 52.94 36.36 25.00 46.67 36.36 45.45 36.84 NA 45.83 NA 41.67 NA NA NA 43.75 42.86 NA 35.71 41.67 NA NA 33.33 NA NA NA K intron_retention CG17002 chr2R + chr2R_2874282_2874338 chr2R_2874281_2874282;chr2R_2874338_2874339 chr2R_2873564_2874281;chr2R_2874339_2874438 3.75 1.67 0.00 7.14 0.00 8.70 3.45 5.56 5.66 7.41 0.00 0.00 NA 0.00 16.67 NA 11.76 7.41 14.29 3.92 0.00 1.16 4.71 4.71 3.85 20.00 5.00 21.43 3.64 6.52 4.35 4.88 0.00 0.00 0.00 12.50 5.43 1.59 3.45 9.59 9.52 7.46 NA 0.00 3.23 7.94 1.59 0.00 0.00 3.12 0.00 0.00 3.95 3.61 9.09 0.00 2.22 2.04 K cassette Gga chrX + chrX_9495210_9496113 chrX_9495210_9495286;chrX_9495445_9496113 chrX_9495287_9495444 chrX_9495093_9495209;chrX_9496114_9496708 100.00 100.00 100.00 100.00 97.22 97.62 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 98.08 100.00 100.00 100.00 100.00 98.82 100.00 100.00 98.59 100.00 100.00 100.00 97.96 100.00 97.14 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 98.00 97.78 100.00 100.00 100.00 100.00 100.00 98.63 100.00 100.00 96.67 100.00 100.00 100.00 100.00 K jcn_only_AA Mnn1 chr2L + chr2L_7057157_7057347 chr2L_7057157_7057223 chr2L_7056561_7057156;chr2L_7057348_7057674 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K alternative_donor Atet,chr2L_4334987_4335394.0,chr2L_4335788_4336447.0 chr2L + chr2L_4334440_4336449;chr2L_4334105_4336449;chr2L_4334111_4336449 chr2L_4334031_4336449 chr2L_4336450_4336957;chr2L_4333936_4334030 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 5.56 0.00 3.03 0.00 0.00 8.33 0.00 0.00 0.00 0.00 2.13 3.33 0.00 2.78 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 2.50 3.51 0.00 0.00 0.00 10.26 0.00 0.00 8.00 2.27 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 K intron_retention CG18324,I_chr2R_10068194_10068715 chr2R + chr2R_10056609_10056891 chr2R_10056608_10056609;chr2R_10056891_10056892 chr2R_10056291_10056608;chr2R_10056892_10057027 33.33 41.18 33.33 56.67 40.00 35.00 30.56 32.50 36.36 NA NA 38.89 63.64 33.33 38.89 35.90 29.41 38.10 40.00 31.11 16.67 35.29 28.57 31.03 42.86 34.78 36.00 40.00 22.22 13.79 38.64 11.76 41.67 35.29 43.75 43.75 23.08 19.05 30.77 16.67 41.18 34.88 31.82 20.69 10.53 24.14 31.43 31.25 32.43 30.30 42.86 33.33 35.71 24.14 33.33 34.62 25.00 33.33 K intron_retention sec23,I_chr3R_1474873_1475080,I_chr3R_1477727_1478102 chr3R + chr3R_1476692_1476753 chr3R_1476691_1476692;chr3R_1476753_1476754 chr3R_1475442_1476691;chr3R_1476754_1476907 0.66 0.76 0.00 1.62 1.38 0.00 0.00 0.00 1.04 1.46 0.41 0.82 0.61 0.00 1.29 1.10 0.00 1.59 1.29 0.46 1.06 0.00 0.70 2.53 0.00 0.00 2.36 2.61 0.00 0.99 0.58 0.00 0.00 1.56 1.57 0.66 0.81 0.83 0.26 1.77 0.88 0.95 0.00 0.00 0.00 0.55 1.34 0.00 1.54 0.58 0.82 0.00 0.82 1.47 0.00 0.00 0.00 0.00 K intron_retention Df31,RE_chr2L_21628206_21629662,I_chr2L_21628206_21629666,I_chr2L_21628210_21628515,I_chr2L_21628210_21628944,I_chr2L_21628210_21629216,EI_chr2L_21628210_21629715,REI_chr2L_21628210_21629884,I_chr2L_21628224_21629666,I_chr2L_21628734_21629666 chr2L - chr2L_21628210_21629216 chr2L_21628209_21628210;chr2L_21629216_21629217 chr2L_21628124_21628209;chr2L_21629217_21629264 90.91 NA 87.50 85.71 NA NA 93.33 95.00 94.44 NA NA 83.33 88.89 100.00 92.86 94.12 88.89 91.67 92.86 80.95 90.91 87.50 92.31 83.33 100.00 90.00 94.74 NA 100.00 100.00 90.91 87.50 88.89 94.74 100.00 100.00 92.86 80.00 90.91 72.00 90.91 86.36 84.62 NA 71.43 93.75 91.67 93.33 95.00 90.91 92.86 90.00 NA 84.62 88.89 66.67 NA 92.31 K intron_retention CtBP chr3R + chr3R_8845924_8846575 chr3R_8845923_8845924;chr3R_8846575_8846576 chr3R_8845618_8845923;chr3R_8846576_8846836 2.19 3.12 2.68 3.24 3.05 3.12 6.21 3.53 3.07 0.97 4.08 2.97 5.50 5.88 4.38 5.88 4.72 2.40 6.59 1.87 1.98 1.25 0.98 1.85 3.45 1.98 3.05 3.31 2.63 1.49 3.97 0.00 2.17 3.24 3.85 0.74 1.75 0.97 2.10 1.57 1.89 2.61 2.00 0.71 1.56 1.33 1.37 0.00 3.80 1.51 2.13 3.26 0.00 0.95 2.19 2.44 0.00 1.44 K intron_retention ScpX chr2L + chr2L_18831387_18831722 chr2L_18831386_18831387;chr2L_18831722_18831723 chr2L_18831240_18831386;chr2L_18831723_18832046 0.00 0.00 0.00 0.00 0.00 0.00 12.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 10.20 3.39 1.45 0.00 12.90 0.00 1.82 5.00 0.00 0.00 0.00 0.00 1.33 2.65 0.00 0.00 NA 0.00 0.00 1.33 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Pitslre,I_chr3L_20764965_20765781,I_chr3L_20764965_20766192,I_chr3L_20764965_20766212,I_chr3L_20766064_20766192,I_chr3L_20766064_20766215,RI_chr3L_20766064_20766893,I_chr3L_20766311_20766664,I_chr3L_20766311_20766893,I_chr3L_20766773_20766893 chr3L + chr3L_20764709_20766893 chr3L_20764965_20766893 chr3L_20766894_20766993;chr3L_20764640_20764708 100.00 100.00 100.00 100.00 94.12 95.24 100.00 96.88 97.56 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 95.00 95.83 97.37 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 94.74 100.00 K jcn_only_AD CG2201,I_chr2L_21618111_21618314 chr2L - chr2L_21618111_21618708 chr2L_21618111_21618495 chr2L_21618011_21618110;chr2L_21618709_21618749 84.00 NA NA NA NA NA NA 95.65 84.00 NA NA NA NA NA NA NA NA NA NA 82.61 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 84.00 NA NA NA NA NA NA 89.29 NA NA NA NA NA NA NA NA NA K alternative_donor CG12655,I_chrX_19852934_19853195 chrX - chrX_19852934_19853333 chrX_19852934_19853195 chrX_19852834_19852933;chrX_19853334_19853626 0.49 0.37 0.00 1.22 0.00 0.00 0.49 0.87 0.69 0.00 0.00 0.98 1.22 0.00 0.49 3.37 0.55 0.76 0.73 0.80 0.00 0.51 0.00 0.33 1.34 0.59 0.81 0.00 2.14 0.00 0.92 0.00 0.53 0.98 1.27 0.77 0.18 0.32 0.25 0.00 0.00 1.06 0.00 0.24 0.94 0.00 1.02 0.57 0.00 0.00 0.65 0.00 0.00 0.00 1.01 0.28 0.31 0.75 K jcn_only_AD Tak1,I_chrX_20388150_20389255 chrX - chrX_20388150_20392250;chrX_20388150_20389255 chrX_20388150_20388725 chrX_20388050_20388149;chrX_20392251_20392299 36.96 36.31 41.59 30.30 39.47 34.74 41.67 32.33 43.48 40.78 42.48 32.89 36.96 44.23 43.12 47.37 39.42 45.96 37.93 36.33 32.54 38.08 38.41 32.68 44.23 44.34 33.95 44.68 32.45 34.04 38.52 31.96 28.25 35.84 34.95 44.44 27.78 30.12 33.90 34.97 35.05 38.34 30.48 41.96 22.60 39.74 46.67 35.42 33.49 36.96 51.41 45.45 43.75 34.69 42.38 31.61 50.22 29.51 K jcn_only_AA Flo-2 chrX + chrX_14818447_14820768;chrX_14818447_14820798;chrX_14818447_14819678 chrX_14818447_14824779 chrX_14818259_14818446 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.00 3.77 0.00 NA 11.11 1.92 1.79 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 3.33 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 K alternative_acceptor CG4078,I_chrX_5645012_5645067,F_chrX_5650884_5651894 chrX + chrX_5645012_5645096 chrX_5645012_5645067 chrX_5644912_5645011;chrX_5645097_5645167 5.96 NA NA NA NA NA NA NA 14.29 NA NA 6.67 NA NA NA NA NA NA NA NA NA NA 5.26 0.00 NA NA 25.00 NA NA NA NA NA NA 27.27 NA NA 6.67 NA NA 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA NA 7.69 0.00 NA NA NA NA NA NA 6.67 N alternative_donor Lag1,RI_chrX_6153758_6153930,I_chrX_6153758_6155077,RI_chrX_6153758_6161036,I_chrX_6160751_6160887,I_chrX_6160907_6161036 chrX - chrX_6153758_6155077;chrX_6153758_6154631;chrX_6153758_6153930;chrX_6153758_6154193;chrX_6153758_6154358;chrX_6153758_6160439 chrX_6153758_6161036 chrX_6153658_6153757;chrX_6161037_6161136 0.43 0.41 0.00 1.16 0.56 0.52 0.00 0.27 0.19 0.64 2.43 0.25 0.46 0.48 0.00 1.00 0.51 0.46 1.27 0.19 0.46 0.37 0.29 0.00 0.52 0.52 0.37 0.99 0.53 0.00 0.46 1.05 0.27 0.53 0.93 0.00 0.32 0.44 0.36 0.99 0.43 0.89 0.51 0.00 0.49 0.00 0.41 0.31 0.23 0.84 0.32 0.00 0.00 1.69 0.00 0.96 0.00 0.00 K intron_retention pds5,RI_chr2R_7915738_7915799,I_chr2R_7922306_7922992 chr2R + chr2R_7915738_7916057 chr2R_7915737_7915738;chr2R_7916057_7916058 chr2R_7915638_7915737;chr2R_7916058_7916160 13.38 15.38 11.54 23.53 12.50 NA 17.50 4.17 11.11 13.04 14.29 12.20 29.41 NA 10.71 0.00 NA 29.41 NA 7.35 10.00 12.82 6.45 9.52 24.24 16.67 25.00 33.33 19.05 20.00 11.76 NA 16.39 13.64 12.50 28.21 15.56 8.33 15.38 12.73 28.57 13.11 23.08 9.52 20.00 15.38 17.65 5.56 9.30 NA 12.50 7.14 13.04 20.00 10.71 NA 14.29 16.67 K jcn_only_AD vsg,I_chr3L_9707724_9708265 chr3L + chr3L_9707496_9707605 chr3L_9707500_9707605 chr3L_9707606_9707723;chr3L_9707406_9707495 96.32 96.34 96.70 97.19 95.44 96.57 96.97 96.06 96.89 96.32 97.40 95.93 96.68 94.66 95.08 96.64 96.32 97.05 96.04 95.79 97.55 96.17 95.19 96.77 96.20 94.83 97.71 95.28 94.74 95.42 96.66 95.42 95.51 96.77 94.84 94.66 97.20 98.10 97.06 95.21 96.13 96.17 95.83 97.17 96.62 96.28 96.32 94.18 97.01 97.50 96.53 98.41 95.77 98.86 95.47 96.62 97.69 96.78 K alternative_acceptor CG10737 chr2R + chr2R_15062754_15063770;chr2R_15062754_15063692 chr2R_15062754_15063752 chr2R_15062592_15062753;chr2R_15063771_15063852 5.88 8.08 8.49 10.34 7.69 2.30 13.00 3.18 7.48 2.56 4.76 6.47 4.26 4.60 2.06 13.89 3.12 5.31 3.06 7.80 13.21 15.31 5.08 3.85 3.12 5.61 4.00 10.00 1.72 6.02 5.04 1.67 32.23 12.08 9.21 3.33 5.74 7.45 4.90 6.38 1.61 8.37 13.58 2.70 14.29 1.64 2.94 9.72 8.43 5.49 6.03 8.22 8.05 5.88 4.31 10.71 5.00 6.96 K alternative_donor exo84 chr3R - chr3R_21877640_21877695 chr3R_21877640_21877692 chr3R_21877309_21877639;chr3R_21877696_21877851 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 1.08 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Crk,RI_chr4_231302_233315,I_chr4_231307_232253 chr4 + chr4_233356_233449 chr4_233356_233416 chr4_233316_233355;chr4_233450_233734 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 95.83 100.00 100.00 94.12 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 K intron_retention CG15611,I_chr2R_12996782_13000822 chr2R + chr2R_12996467_12996573 chr2R_12996466_12996467;chr2R_12996573_12996574 chr2R_12996353_12996466;chr2R_12996574_12996781 100.00 94.44 100.00 100.00 100.00 100.00 95.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 NA 100.00 94.74 100.00 100.00 100.00 100.00 100.00 NA 100.00 94.74 100.00 95.00 100.00 100.00 100.00 94.74 88.89 100.00 93.33 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 97.22 100.00 94.12 100.00 100.00 NA 100.00 100.00 92.31 100.00 K intron_retention Hrb98DE,I_chr3R_24425722_24426084,I_chr3R_24425722_24428493,I_chr3R_24426291_24426781,I_chr3R_24426737_24426805,snoRNA:Psi28S-3405a,snoRNA:Psi28S-3305a,snoRNA:Psi28S-3405b,snoRNA:Psi28S-3405c,snoRNA:Psi28S-3305b,snoRNA:Psi28S-3405d,RI_chr3R_24429041_24431183 chr3R + chr3R_24425722_24426427 chr3R_24425721_24425722;chr3R_24426427_24426428 chr3R_24425622_24425721;chr3R_24426428_24426917 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 4.08 0.00 0.00 0.00 1.92 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 2.94 0.00 0.00 8.70 NA NA 0.00 0.00 0.00 NA 0.00 K jcn_only_AD M(2)21AB,I_chr2L_107839_110405,I_chr2L_107957_108587,I_chr2L_110878_111037,I_chr2L_112022_112689,RI_chr2L_132256_132482 chr2L + chr2L_108347_108587;chr2L_108227_108587;chr2L_107839_108587 chr2L_108102_108587 chr2L_108588_108687;chr2L_107833_107838 2.54 3.55 2.02 2.93 1.56 1.34 3.33 4.91 1.62 2.54 4.47 4.82 1.35 3.90 2.70 4.82 1.37 3.37 2.63 3.44 2.27 1.81 1.91 2.95 3.56 1.32 1.04 2.93 2.38 2.94 2.30 4.27 9.68 2.30 1.55 2.26 2.06 0.65 1.47 4.17 13.83 3.49 2.65 1.58 2.44 8.12 1.65 7.73 2.76 2.29 1.31 1.75 2.14 2.60 4.55 2.17 1.66 2.70 K alternative_donor I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17183481_17200781,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,I_chr3R_17197790_17197863 chr3R - chr3R_17197790_17200781 chr3R_17197790_17197863 chr3R_17197765_17197789;chr3R_17200782_17200881 75.00 65.00 92.31 78.95 66.67 73.33 72.22 65.00 75.00 77.78 90.00 75.86 88.89 69.23 72.22 82.35 72.73 90.91 73.33 87.88 75.00 86.67 72.00 69.57 76.92 75.00 81.25 66.67 71.43 77.78 100.00 93.33 74.19 72.73 69.23 92.86 82.14 66.67 74.07 79.41 70.59 80.77 66.67 66.67 75.00 77.78 77.78 70.00 87.50 81.25 68.18 76.92 92.86 70.00 80.00 69.57 81.25 68.97 K intron_retention CG33691_CG33692,CG33691 chrX + chrX_6772517_6772578 chrX_6772516_6772517;chrX_6772578_6772579 chrX_6771947_6772516;chrX_6772579_6774300 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor HP5 chrX + chrX_11350521_11350687 chrX_11350521_11350617 chrX_11349315_11350520;chrX_11350688_11350915 17.09 24.00 4.55 54.55 21.43 9.52 27.27 18.52 20.00 9.09 25.00 19.51 35.29 15.38 10.00 15.38 20.00 18.75 17.65 19.51 25.00 18.52 9.09 21.43 22.22 46.15 19.05 4.76 8.33 8.33 18.52 NA 12.50 28.57 20.00 23.53 8.82 11.54 16.67 11.11 30.77 12.20 5.56 4.76 23.08 12.50 20.00 17.50 20.00 5.88 16.00 8.70 0.00 10.00 14.29 5.00 16.67 7.14 K intron_retention Myb,RI_chrX_15752571_15753225 chrX - chrX_15751579_15751709 chrX_15751578_15751579;chrX_15751709_15751710 chrX_15749823_15751578;chrX_15751710_15751876 98.55 95.83 100.00 98.18 95.00 96.30 97.78 98.70 100.00 100.00 94.44 100.00 100.00 96.67 96.67 98.53 96.67 96.00 100.00 95.52 87.50 100.00 100.00 100.00 100.00 96.15 100.00 93.75 95.83 94.44 100.00 92.86 96.55 98.57 94.44 100.00 94.74 93.75 100.00 100.00 93.33 98.25 100.00 100.00 93.75 100.00 100.00 100.00 98.55 100.00 100.00 100.00 94.74 92.86 100.00 100.00 100.00 97.14 K intron_retention Acf1,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27623461_27623517 chr3R_27623460_27623461;chr3R_27623517_27623518 chr3R_27621993_27623460;chr3R_27623518_27624355 100.00 100.00 98.33 98.57 100.00 100.00 100.00 98.88 100.00 100.00 97.62 99.18 100.00 100.00 100.00 100.00 100.00 100.00 97.01 100.00 100.00 100.00 98.78 100.00 100.00 98.39 98.59 100.00 100.00 100.00 100.00 100.00 98.70 98.98 100.00 100.00 100.00 100.00 100.00 98.47 98.41 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,I_chr2R_20289332_20290093 chr2R - chr2R_20288968_20289185 chr2R_20289009_20289185 chr2R_20289186_20289285;chr2R_20288868_20288967 94.64 100.00 94.55 88.80 96.00 94.92 97.12 96.18 89.83 93.48 96.23 92.79 94.81 100.00 94.44 94.44 91.30 100.00 93.81 97.14 84.31 86.96 95.83 96.00 100.00 90.54 95.52 91.11 93.10 97.87 95.88 NA 91.03 97.32 94.55 95.56 95.08 94.87 100.00 94.68 94.59 92.00 98.39 91.94 91.67 87.80 NA 95.40 94.44 94.23 93.75 95.45 85.19 NA 90.35 97.22 80.00 95.45 K intron_retention AP-1sigma,I_chr3R_19786283_19787772 chr3R + chr3R_19785316_19787772 chr3R_19785315_19785316;chr3R_19787772_19787773 chr3R_19785178_19785315;chr3R_19787773_19787872 37.14 30.77 42.86 38.46 29.27 30.77 55.88 40.00 35.16 12.00 63.16 40.00 71.43 40.48 50.00 39.68 31.25 37.14 41.67 36.92 52.63 26.47 33.96 20.69 50.00 47.50 46.34 50.00 38.71 50.00 35.56 14.81 12.12 37.66 43.33 42.31 46.88 44.00 29.03 42.50 25.93 37.21 44.44 22.22 21.88 17.31 25.64 24.14 39.51 23.08 35.71 34.78 15.15 17.65 40.00 21.21 15.91 8.00 K intron_retention F_chr2L_15260838_15261717,cul-3 chr2L - chr2L_15266527_15266595 chr2L_15266526_15266527;chr2L_15266595_15266596 chr2L_15266029_15266526;chr2L_15266596_15266734 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 1.35 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette klett chrX - chrX_21499782_21501000 chrX_21499782_21499946;chrX_21500820_21501000 chrX_21499947_21500819 chrX_21499389_21499781;chrX_21501001_21501058 92.93 97.96 92.98 77.94 93.18 91.84 87.25 90.43 94.17 86.67 91.67 92.71 79.66 93.44 92.98 88.51 88.24 95.24 92.06 93.75 90.24 75.00 93.26 94.92 92.59 86.79 96.15 88.64 84.44 91.43 94.26 93.55 93.18 89.32 90.38 93.85 98.25 97.30 95.52 92.93 86.84 93.33 89.80 97.40 91.43 93.85 95.56 89.86 92.86 96.23 98.72 94.74 94.12 91.67 96.83 88.10 97.50 89.83 K alternative_donor Tak1,I_chrX_20388150_20389255 chrX - chrX_20388150_20388725;chrX_20388150_20389255 chrX_20388150_20392250 chrX_20388050_20388149;chrX_20392251_20392299 82.00 87.50 82.14 88.64 87.04 80.77 80.22 80.77 84.57 82.69 79.31 86.99 77.55 82.00 81.13 75.00 84.31 81.69 79.03 84.38 84.72 80.95 86.08 86.05 82.00 79.25 86.21 70.42 81.13 83.33 80.28 78.95 85.25 81.82 83.33 79.69 92.76 89.66 89.17 79.05 74.58 83.59 85.00 81.94 85.71 72.84 80.52 65.52 83.19 82.76 79.45 82.22 82.22 87.76 81.94 87.80 81.63 73.42 K alternative_donor CG31673,RI_chr2L_20830210_20830280 chr2L + chr2L_20830794_20830860 chr2L_20830797_20830860 chr2L_20830861_20830928;chr2L_20830728_20830793 98.31 97.87 99.09 97.30 97.67 100.00 97.25 98.56 99.40 100.00 98.39 97.50 100.00 97.85 98.95 98.53 100.00 98.65 96.84 99.19 98.78 96.77 95.00 96.61 98.53 98.80 97.80 98.67 98.31 98.44 97.41 98.67 95.70 97.37 98.72 98.68 98.28 100.00 98.06 95.30 98.91 98.82 94.12 98.39 95.79 100.00 99.14 95.60 96.48 97.81 99.01 94.87 96.59 100.00 98.15 97.95 98.29 96.82 K jcn_only_AD RpL15 chr3LHet + chr3LHet_2397859_2398049;chr3LHet_2397820_2398049 chr3LHet_2397992_2398049 chr3LHet_2398050_2398052;chr3LHet_2397802_2397819 91.29 100.00 100.00 79.63 NA NA 98.16 85.71 98.46 NA NA 94.74 100.00 96.88 NA 87.32 92.00 95.00 87.10 91.84 NA 87.23 95.83 100.00 100.00 91.67 NA 40.00 72.50 NA 62.71 64.10 70.00 84.21 95.24 NA NA NA NA 44.93 60.87 78.57 90.91 68.00 72.73 80.00 96.55 52.50 84.06 100.00 100.00 NA NA 95.65 NA 94.59 100.00 47.37 K intron_retention CG1814,Updo chr2R + chr2R_5467872_5467956 chr2R_5467871_5467872;chr2R_5467956_5467957 chr2R_5467468_5467871;chr2R_5467957_5468252 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.13 3.77 0.00 4.55 0.00 0.00 0.00 0.00 5.00 NA 8.00 0.00 4.94 0.00 0.00 0.00 4.65 4.17 0.00 5.26 0.00 0.00 0.00 0.00 0.00 3.39 5.71 0.00 0.00 6.12 0.00 1.92 3.12 4.76 3.39 0.00 8.33 6.82 0.00 2.78 7.55 1.69 7.50 3.77 0.00 0.00 2.94 3.23 9.52 0.00 0.00 K alternative_acceptor Lasp,I_chr3L_16671761_16673911,R_chr3L_16672970_16673911,RI_chr3L_16674471_16704042 chr3L - chr3L_16672970_16673911;chr3L_16672574_16673911 chr3L_16673033_16673911 chr3L_16673912_16674011;chr3L_16671908_16672573 94.77 94.40 94.86 85.71 96.98 94.77 91.32 94.84 94.85 96.21 88.94 90.34 100.00 95.65 95.67 94.14 97.48 91.21 98.45 94.51 89.89 85.76 93.76 96.30 95.18 93.48 95.29 95.22 89.45 93.85 95.15 96.30 94.86 94.13 94.48 98.48 93.78 93.22 96.12 93.94 93.97 95.07 96.21 95.15 85.59 96.91 92.23 95.51 95.20 93.87 94.24 93.87 96.75 93.18 94.33 96.00 90.94 96.89 K intron_retention CG32521,I_chrX_21077138_21082106,I_chrX_21077612_21082713,EI_chrX_21080561_21082106,I_chrX_21080906_21082713,CREF_chrX_21082827_21152068,EF_chrX_21094675_21152068 chrX - chrX_21080906_21082106 chrX_21080905_21080906;chrX_21082106_21082107 chrX_21080838_21080905;chrX_21082107_21082206 53.85 53.85 53.85 NA NA 90.00 81.25 NA 57.69 66.67 NA 65.00 NA 46.15 66.67 41.67 90.00 40.00 69.23 81.25 63.64 28.99 50.00 58.82 81.82 NA 60.00 21.05 40.91 46.15 70.00 NA 39.39 47.37 46.15 NA 50.00 42.86 42.86 63.64 63.64 65.00 NA 52.17 36.00 58.33 NA 66.67 70.59 40.00 63.64 25.00 NA NA 52.63 46.15 46.15 55.56 K alternative_donor CG15601 chrX + chrX_15605352_15605541 chrX_15605490_15605541 chrX_15605542_15606219;chrX_15605050_15605351 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 93.75 100.00 100.00 100.00 100.00 100.00 100.00 81.82 100.00 100.00 100.00 92.31 85.71 100.00 100.00 100.00 NA 100.00 85.71 83.33 100.00 87.50 100.00 85.71 100.00 100.00 83.33 NA 84.62 100.00 100.00 90.91 100.00 100.00 83.33 100.00 100.00 100.00 100.00 100.00 93.33 100.00 87.50 100.00 80.00 100.00 90.91 87.50 100.00 90.91 K multi_cassette lig,I_chr2R_3960977_3961116,I_chr2R_3960977_3961119,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3960284_3961104 chr2R_3960284_3960631;chr2R_3960740_3960871;chr2R_3960977_3961104 chr2R_3960632_3960739;chr2R_3960872_3960976 chr2R_3959868_3960283;chr2R_3961105_3961205 98.22 98.58 98.48 99.65 98.48 97.87 95.69 99.60 97.44 92.59 97.02 100.00 99.30 99.34 98.16 99.48 97.52 99.35 100.00 98.56 97.96 98.22 98.78 97.65 96.86 94.58 98.49 99.41 98.02 98.70 95.11 97.25 96.07 98.59 99.54 98.34 97.92 99.68 98.79 97.35 92.44 97.03 98.68 98.51 93.33 95.39 98.60 94.72 97.43 98.96 98.93 98.89 97.47 97.42 98.49 97.08 98.03 97.46 K intron_retention CG1319,RI_chr3L_4292594_4292646,I_chr3L_4292741_4292830,F_chr3L_4292778_4292830 chr3L + chr3L_4292743_4292830 chr3L_4292742_4292743;chr3L_4292830_4292831 chr3L_4292678_4292742;chr3L_4292831_4292930 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention Karl,I_chrX_11687161_11687475,I_chrX_11689220_11690898 chrX + chrX_11682370_11682812 chrX_11682369_11682370;chrX_11682812_11682813 chrX_11682363_11682369;chrX_11682813_11683136 50.00 46.15 NA NA NA NA 50.00 50.00 100.00 NA 26.67 100.00 14.29 57.14 50.00 58.82 NA NA 100.00 45.45 30.77 NA NA NA NA 46.15 NA NA NA NA 100.00 NA NA 64.71 100.00 NA NA NA NA NA NA 42.86 41.67 NA NA NA NA NA 60.00 NA 42.11 NA NA NA 41.67 NA 100.00 NA K intron_retention didum,I_chr2R_3393005_3393348 chr2R + chr2R_3392221_3392279 chr2R_3392220_3392221;chr2R_3392279_3392280 chr2R_3391334_3392220;chr2R_3392280_3392806 0.00 0.00 0.00 12.50 0.00 0.00 3.12 4.08 2.27 NA 0.00 0.00 0.00 0.00 0.00 2.00 NA 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 2.94 NA 0.00 0.00 3.45 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 NA 0.00 0.00 0.00 0.00 K cassette ham chr2L - chr2L_18776375_18779804 chr2L_18776375_18776471;chr2L_18776604_18779804 chr2L_18776472_18776603 chr2L_18776149_18776374;chr2L_18779805_18780331 54.74 47.37 52.83 13.16 58.82 51.22 34.92 60.56 50.93 69.23 96.97 50.00 68.75 59.52 45.00 66.10 63.41 50.00 55.00 54.62 97.06 65.71 44.90 51.61 47.83 43.90 65.52 47.06 35.71 65.38 58.06 61.54 57.58 60.23 50.00 17.24 54.55 50.00 50.00 59.18 66.67 50.46 50.00 68.18 39.13 61.90 68.18 50.00 54.74 63.16 58.70 57.14 53.33 43.75 62.26 41.67 59.09 72.73 K multi_cassette dlg1,I_chrX_11298230_11299306 chrX + chrX_11292856_11299306 chrX_11292856_11293774;chrX_11293850_11294820;chrX_11294866_11299306 chrX_11293775_11293849;chrX_11294821_11294865 chrX_11292753_11292855;chrX_11299307_11299406 100.00 100.00 100.00 100.00 100.00 100.00 88.89 97.73 100.00 94.12 83.33 100.00 93.33 100.00 96.43 100.00 100.00 96.77 96.30 100.00 100.00 97.83 97.22 100.00 100.00 100.00 92.59 97.22 94.44 100.00 100.00 100.00 98.00 98.18 100.00 91.67 97.14 100.00 100.00 97.22 100.00 100.00 93.75 97.22 95.00 93.75 100.00 96.43 100.00 100.00 100.00 96.15 100.00 93.33 100.00 94.44 88.89 100.00 K jcn_only_AD CG17912,I_chr2L_16748617_16749055,I_chr2L_16749189_16749266 chr2L + chr2L_16746617_16749055 chr2L_16748617_16749055 chr2L_16749056_16749155;chr2L_16746227_16746616 4.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 3.70 7.14 NA NA NA 4.55 0.00 NA NA NA NA NA NA NA 9.09 12.00 3.23 NA NA NA NA 23.81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG7394,I_chr3L_11556335_11556402 chr3L + chr3L_11556201_11556402 chr3L_11556335_11556402 chr3L_11556403_11556502;chr3L_11555961_11556200 0.00 0.00 0.00 0.43 0.00 1.95 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.88 0.00 0.00 0.84 0.00 0.00 0.54 0.00 0.00 0.43 0.39 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.57 0.00 0.00 0.00 0.57 0.50 0.00 0.00 K jcn_only_AA CG31122 chr3R - chr3R_14233936_14233996 chr3R_14233939_14233996 chr3R_14233997_14234162;chr3R_14233613_14233935 23.53 28.85 17.00 25.93 18.48 23.29 23.60 18.69 16.27 30.77 28.77 24.46 19.12 14.63 18.09 26.74 36.07 16.67 19.40 18.75 23.94 21.32 27.72 36.70 23.53 16.22 26.28 28.32 18.40 20.13 28.05 27.03 22.91 21.74 26.73 23.85 27.84 23.14 26.46 26.51 26.19 15.43 19.70 22.58 30.40 17.43 19.83 26.61 18.44 30.53 17.61 27.00 20.83 26.13 22.47 19.72 24.10 28.16 K intron_retention CG1622,REI_chrX_13191277_13191339,I_chrX_13191916_13192167,I_chrX_13192409_13192738,EI_chrX_13192857_13192928 chrX + chrX_13191916_13192167 chrX_13191915_13191916;chrX_13192167_13192168 chrX_13191816_13191915;chrX_13192168_13192202 93.09 94.12 90.00 88.89 NA NA 95.00 91.67 93.75 NA NA 96.00 NA 88.89 91.67 NA NA 92.86 100.00 100.00 100.00 78.95 84.00 95.00 93.75 92.31 89.47 84.62 96.88 72.22 94.44 85.71 84.62 100.00 93.33 100.00 92.31 85.71 96.00 95.45 95.45 93.75 NA 94.12 90.91 96.30 88.24 92.00 92.86 94.44 95.45 90.00 91.67 85.71 100.00 87.50 NA 93.33 K intron_retention Pglym78,Rpn2 chr3R + chr3R_24975229_24975290 chr3R_24975228_24975229;chr3R_24975290_24975291 chr3R_24974731_24975228;chr3R_24975291_24975977 0.58 0.00 0.63 1.26 0.00 0.00 0.38 0.00 0.00 0.53 0.00 1.09 0.00 0.00 0.00 0.00 0.00 2.34 0.00 0.00 0.00 2.52 1.25 0.00 0.58 0.00 1.60 2.78 1.78 2.08 0.53 1.23 2.35 0.39 0.00 0.56 1.64 0.83 1.14 0.00 1.22 0.95 0.00 0.76 0.00 1.66 1.58 1.64 1.28 1.01 1.19 1.30 0.00 0.00 1.31 1.85 0.00 0.81 K cassette Amph,I_chr2R_8498227_8498492 chr2R + chr2R_8495684_8498083 chr2R_8495684_8496733;chr2R_8497142_8498083 chr2R_8496734_8497141 chr2R_8495584_8495683;chr2R_8498084_8498226 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 97.67 100.00 100.00 100.00 100.00 97.78 100.00 99.24 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG42348,I_chr3L_20147245_20147306,I_chr3L_20149990_20151579 chr3L - chr3L_20147245_20147303 chr3L_20147244_20147245;chr3L_20147303_20147304 chr3L_20147177_20147244;chr3L_20147304_20147366 0.00 1.65 0.00 1.94 0.00 0.00 2.44 1.24 0.82 0.00 0.00 1.29 0.00 0.00 1.75 0.88 0.00 0.00 0.00 1.08 0.00 0.00 2.86 0.75 0.00 0.00 3.25 1.82 0.00 0.00 0.00 0.50 0.76 1.01 0.00 0.00 1.44 0.00 0.00 0.48 1.59 0.85 1.27 0.00 0.00 1.10 0.00 0.85 1.46 0.00 0.74 0.00 0.00 2.73 0.71 0.00 0.00 0.32 K alternative_donor skd chr3L - chr3L_21018649_21020395;chr3L_21018649_21019229;chr3L_21018649_21020239 chr3L_21018649_21020285 chr3L_21018052_21018648;chr3L_21020396_21020501 9.16 NA NA 25.00 NA NA 27.27 0.00 0.00 NA NA 0.00 0.00 14.29 NA 11.76 NA NA NA 0.00 NA 0.00 37.50 NA NA NA 25.00 NA 20.00 0.00 NA NA 0.00 0.00 NA 0.00 NA NA NA 40.00 NA 8.33 0.00 25.00 NA NA NA 14.29 10.00 NA NA NA NA NA 50.00 NA NA NA K intron_retention CG3191,CG3091,I_chrX_2147635_2147990 chrX - chrX_2145128_2145227 chrX_2145127_2145128;chrX_2145227_2145228 chrX_2145046_2145127;chrX_2145228_2145383 36.22 NA NA 43.75 NA NA NA NA 30.77 NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA 54.55 NA NA NA NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA K alternative_donor CG13384 chr2L + chr2L_8384517_8384699 chr2L_8384541_8384699 chr2L_8384700_8384895;chr2L_8384486_8384516 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA 100.00 K alternative_donor CG17737,I_chr3L_3223527_3224313,I_chr3L_3223943_3224313 chr3L + chr3L_3223415_3223474 chr3L_3223422_3223474 chr3L_3223475_3223526;chr3L_3223400_3223414 92.86 91.67 85.29 91.87 92.68 88.37 94.74 93.10 94.54 100.00 88.89 88.30 81.16 94.74 88.33 92.90 93.55 86.54 92.05 83.33 84.62 100.00 100.00 97.06 100.00 98.41 100.00 90.91 100.00 100.00 86.15 92.31 NA 92.05 92.86 NA 100.00 93.75 100.00 95.00 100.00 89.31 87.14 100.00 92.31 90.91 84.00 60.00 89.08 95.83 94.74 95.45 88.89 100.00 90.14 100.00 97.18 73.33 K intron_retention CG34159,I_chr2L_10203661_10204065 chr2L - chr2L_10203661_10204171 chr2L_10203660_10203661;chr2L_10204171_10204172 chr2L_10203561_10203660;chr2L_10204172_10204359 0.00 0.00 4.55 1.85 0.00 0.00 0.00 5.17 1.10 0.00 0.00 2.50 0.00 2.27 3.39 3.57 0.00 0.00 0.00 0.00 0.00 2.34 0.00 1.27 2.63 6.90 0.00 1.47 3.12 0.00 0.00 2.47 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 2.08 2.38 0.00 0.00 0.00 0.00 2.04 0.00 2.94 0.00 1.02 0.00 0.00 0.00 0.00 2.27 0.00 0.00 K alternative_donor mys,I_chrX_7958795_7961094 chrX + chrX_7955904_7957872;chrX_7955908_7957872;chrX_7955914_7957872;chrX_7955759_7957872;chrX_7956114_7957872;chrX_7955901_7957872;chrX_7955967_7957872 chrX_7956125_7957872 chrX_7957873_7958492;chrX_7955741_7955758 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive gish,RI_chr3R_12118557_12122383 chr3R + chr3R_12118557_12121393,chr3R_12121543_12122383 chr3R_12118557_12119708,chr3R_12119876_12122383 chr3R_12121394_12121542 chr3R_12119709_12119875 chr3R_12118496_12118556;chr3R_12122384_12122483 53.62 46.34 48.94 60.27 57.14 50.00 60.81 56.52 53.85 38.10 56.00 45.56 54.55 60.47 57.78 51.81 57.50 61.29 53.57 38.37 63.33 53.85 57.75 52.17 51.52 54.29 52.00 58.06 53.12 41.67 45.83 50.00 52.78 57.14 45.16 42.50 50.00 53.85 54.55 53.62 50.00 53.33 50.00 50.88 53.85 52.17 48.65 46.34 53.76 54.55 58.46 54.76 45.45 55.56 58.70 62.07 55.88 47.37 K intron_retention bbc,REI_chr2R_9379401_9381986 chr2R - chr2R_9375415_9375478 chr2R_9375414_9375415;chr2R_9375478_9375479 chr2R_9374144_9375414;chr2R_9375479_9375637 0.00 0.00 0.26 0.77 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.74 0.52 0.00 0.00 0.00 0.00 0.25 0.00 0.29 0.00 0.17 0.00 0.00 1.09 1.96 0.15 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.21 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.22 K intron_retention CG2219,I_chr4_199813_199889,RI_chr4_202143_202194 chr4 - chr4_199507_199562 chr4_199506_199507;chr4_199562_199563 chr4_199463_199506;chr4_199563_199629 8.97 11.54 0.00 14.63 13.79 19.44 10.78 13.95 12.00 12.50 13.95 10.34 12.50 19.44 13.16 20.27 18.00 15.62 17.65 9.30 7.69 0.00 7.69 9.43 4.00 0.00 7.55 10.34 0.00 0.00 9.52 9.09 4.65 20.25 8.33 0.00 4.17 0.00 5.41 6.90 5.88 8.97 8.82 3.95 0.00 12.07 5.56 0.00 14.85 1.89 9.72 11.90 6.25 6.82 9.09 4.17 8.93 5.26 K intron_retention CG17660 chr2L - chr2L_1709105_1709173 chr2L_1709104_1709105;chr2L_1709173_1709174 chr2L_1708821_1709104;chr2L_1709174_1709332 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 1.39 4.88 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 2.13 N jcn_only_AA CG17119,sav chr3R - chr3R_18880054_18880450 chr3R_18880351_18880450 chr3R_18880451_18880553;chr3R_18880008_18880053 100.00 100.00 100.00 94.35 88.39 100.00 91.39 95.96 96.30 100.00 87.00 100.00 100.00 100.00 100.00 93.55 88.98 100.00 100.00 100.00 100.00 100.00 91.63 95.72 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.26 100.00 95.53 100.00 100.00 100.00 95.19 100.00 100.00 92.98 95.56 100.00 100.00 100.00 100.00 94.59 90.09 91.64 93.70 N alternative_donor CG14253,E_chr3R_22806425_22807258 chr3R + chr3R_22806425_22807254;chr3R_22806725_22807254;chr3R_22806454_22807254 chr3R_22806824_22807254 chr3R_22807255_22807473;chr3R_22806325_22806424 33.33 39.80 31.25 34.58 36.76 25.68 29.93 31.07 36.75 43.48 37.29 40.00 31.95 26.46 32.96 29.95 39.55 27.74 33.01 27.09 32.84 34.85 33.03 35.44 30.65 24.67 50.88 47.06 40.00 40.00 31.82 26.87 41.30 30.70 29.67 35.56 36.11 27.91 36.73 43.93 25.42 28.97 28.49 41.27 22.73 44.05 32.31 40.86 34.78 42.22 35.25 36.51 22.41 34.00 29.27 33.33 39.47 24.77 N jcn_only_AA CG1416,I_chr2L_21758100_21758179,I_chr2L_21758143_21758183,I_chr2L_21758143_21758209 chr2L + chr2L_21758143_21758201;chr2L_21758143_21758209;chr2L_21758143_21758205 chr2L_21758143_21758183 chr2L_21758116_21758142;chr2L_21758210_21758279 0.00 0.00 0.00 2.04 0.00 1.61 1.61 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 2.12 0.00 2.35 2.08 1.05 0.00 0.00 2.50 1.85 0.00 0.00 0.00 1.30 0.00 0.96 0.00 NA 0.00 0.00 0.00 0.56 0.00 1.92 0.00 0.00 0.00 0.00 0.00 2.99 1.42 0.00 0.00 1.59 0.00 0.00 0.00 1.05 0.91 1.01 K alternative_acceptor CG32176,RI_chr3L_17427238_17427301 chr3L + chr3L_17427238_17427351 chr3L_17427238_17427288 chr3L_17427138_17427237;chr3L_17427352_17427401 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG15098,I_chr2R_14721290_14721355 chr2R - chr2R_14721290_14721469 chr2R_14721290_14721355 chr2R_14721190_14721289;chr2R_14721470_14721623 0.44 0.43 0.57 0.52 0.35 0.30 0.96 0.72 0.60 0.73 0.54 0.31 0.26 0.46 0.68 0.68 0.62 0.46 0.38 0.28 0.66 0.52 0.37 0.55 0.36 0.55 0.96 0.94 1.23 0.43 0.57 0.43 0.37 0.55 0.38 0.75 0.42 0.35 0.43 0.56 0.54 0.33 0.54 0.37 0.46 0.37 0.27 0.62 0.35 0.45 0.44 0.33 0.20 0.37 0.43 0.21 0.21 0.34 K jcn_only_AD smi35A,I_chr2L_14197587_14197656,E_chr2L_14222082_14233893,RI_chr2L_14233579_14233647 chr2L - chr2L_14197294_14197656 chr2L_14197294_14197362 chr2L_14196927_14197293;chr2L_14197657_14197756 2.78 2.13 0.00 0.00 2.94 3.12 5.26 1.89 2.80 0.00 17.39 1.43 10.91 0.00 2.56 1.79 2.63 17.14 2.70 3.41 2.86 8.33 3.61 1.79 3.03 0.00 1.54 2.78 11.11 5.36 0.00 0.00 1.41 2.78 3.92 1.54 4.29 3.39 0.00 5.56 NA 6.49 3.03 8.33 4.35 0.00 3.33 0.00 1.45 5.26 9.68 2.63 4.76 3.70 0.00 0.00 0.00 0.00 K jcn_only_AD Rab23,I_chr3R_1508710_1508882 chr3R - chr3R_1508710_1510597;chr3R_1508710_1511119 chr3R_1508710_1508882 chr3R_1508610_1508709;chr3R_1511120_1511186 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Trc8 chr3R - chr3R_25325981_25326038 chr3R_25325980_25325981;chr3R_25326038_25326039 chr3R_25325780_25325980;chr3R_25326039_25326220 0.00 0.00 0.00 0.00 0.00 0.00 1.39 1.33 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.05 0.00 1.48 0.78 0.00 0.00 0.00 1.49 0.00 2.82 1.27 1.33 0.00 1.49 0.00 0.00 0.00 2.00 2.02 1.22 0.00 0.00 0.79 0.00 0.00 0.00 1.92 0.95 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 1.30 0.00 K jcn_only_AD CG10462 chr2L - chr2L_19733070_19733162 chr2L_19733070_19733154 chr2L_19733001_19733069;chr2L_19733163_19733336 3.85 2.99 0.00 4.13 2.38 1.56 5.77 4.65 4.05 3.23 1.72 1.46 4.92 5.97 8.33 6.67 4.41 1.54 3.57 2.78 1.59 4.08 5.43 6.82 5.88 3.57 3.36 2.50 8.89 2.63 9.20 11.11 6.82 5.65 0.00 8.20 3.39 7.69 2.15 5.94 0.00 1.34 0.00 1.49 5.97 3.17 6.25 3.51 5.00 0.88 10.00 3.92 1.37 5.17 5.88 2.86 3.28 3.85 K intron_retention bigmax,E_chr3R_23113334_23113889 chr3R - chr3R_23113570_23113617 chr3R_23113569_23113570;chr3R_23113617_23113618 chr3R_23113507_23113569;chr3R_23113618_23113907 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.73 100.00 96.43 100.00 98.96 100.00 100.00 100.00 100.00 100.00 98.00 100.00 99.28 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.53 100.00 100.00 99.05 100.00 97.96 97.44 100.00 100.00 100.00 100.00 100.00 100.00 N intron_retention Aldolase,I_chr3R_22083764_22086684 chr3R - chr3R_22082030_22082256 chr3R_22082029_22082030;chr3R_22082256_22082257 chr3R_22081992_22082029;chr3R_22082257_22082345 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 84.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.95 73.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.23 100.00 100.00 100.00 100.00 61.54 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 69.23 100.00 62.50 K jcn_only_AA Cap-G,CG34439 chr2R + chr2R_9046609_9047235 chr2R_9046609_9047038 chr2R_9046522_9046608;chr2R_9047236_9047380 58.82 48.72 60.28 93.13 61.11 70.15 47.86 79.41 53.79 26.98 72.62 67.26 79.35 64.96 60.67 64.09 61.54 62.86 60.90 84.54 70.37 15.56 42.02 50.00 53.23 57.84 49.54 50.88 50.75 37.04 55.19 66.25 38.46 69.15 63.93 50.00 51.46 64.41 59.12 52.45 57.45 66.02 79.73 43.97 63.79 50.00 60.65 58.82 70.62 44.07 58.18 40.82 50.86 61.83 55.94 61.08 47.08 49.47 N intron_retention vir-1,I_chr2L_12404178_12407208,RE_chr2L_12409622_12421640,I_chr2L_12421830_12423260 chr2L - chr2L_12421862_12423322 chr2L_12421861_12421862;chr2L_12423322_12423323 chr2L_12421641_12421861;chr2L_12423323_12423328 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA 50.00 NA NA NA 57.14 NA 100.00 68.42 100.00 100.00 100.00 100.00 NA NA NA 100.00 NA NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA K alternative_acceptor F_chr3RHet_1879085_1900358,Alg-2 chr3RHet - chr3RHet_1898928_1898983;chr3RHet_1898930_1898983;chr3RHet_1898895_1898983 chr3RHet_1898919_1898983 chr3RHet_1898984_1899090;chr3RHet_1898558_1898894 0.00 0.00 4.76 0.00 0.00 6.06 0.00 2.74 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 4.00 0.00 0.00 0.00 12.50 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Usp7,I_chrX_11919055_11919146,I_chrX_11922059_11922456 chrX - chrX_11919079_11919146;chrX_11919055_11919146 chrX_11919091_11919146 chrX_11919147_11919211;chrX_11918989_11919054 72.41 86.05 74.07 76.19 72.97 70.00 62.50 73.40 75.22 71.43 73.53 70.45 71.74 72.22 75.93 71.62 71.15 70.21 70.31 67.68 74.36 62.26 91.67 69.39 61.54 68.00 81.58 85.71 59.26 75.68 71.15 70.83 72.88 80.90 68.75 58.33 76.60 72.97 79.55 73.21 56.25 74.77 74.36 79.59 68.97 72.92 74.47 62.50 70.10 81.82 75.00 72.41 68.42 70.00 75.38 71.88 74.47 64.58 K intron_retention Rheb,I_chr3R_1395050_1395121,RI_chr3R_1395455_1395563,CRMP chr3R + chr3R_1395194_1395563 chr3R_1395193_1395194;chr3R_1395563_1395564 chr3R_1395122_1395193;chr3R_1395564_1395663 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 7.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA K intron_retention Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045251_16046104 chr3L_16045250_16045251;chr3L_16046104_16046105 chr3L_16045216_16045250;chr3L_16046105_16046204 27.20 34.48 25.00 23.53 29.41 22.50 33.33 27.14 29.85 10.00 29.17 25.37 33.33 31.11 17.78 33.33 27.27 40.00 26.42 21.92 18.52 36.67 35.19 31.03 26.09 28.00 22.50 39.13 20.00 18.00 25.49 16.67 25.42 25.00 31.43 51.28 32.00 31.03 34.62 19.67 23.08 25.33 25.64 25.00 16.67 21.88 33.33 17.57 29.03 35.71 34.21 28.57 31.58 NA 34.00 22.73 35.71 8.93 N jcn_only_AA CG1416,I_chr2L_21758100_21758179,I_chr2L_21758143_21758183,I_chr2L_21758143_21758209 chr2L + chr2L_21758143_21758201;chr2L_21758143_21758209;chr2L_21758143_21758183 chr2L_21758143_21758205 chr2L_21758116_21758142;chr2L_21758210_21758279 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.30 13.89 25.00 0.00 8.53 0.00 17.91 23.73 17.76 0.00 13.98 0.00 8.47 0.00 0.00 0.00 10.53 0.00 0.00 0.00 0.00 0.00 0.00 14.47 0.00 0.00 13.46 0.00 NA 0.00 0.00 15.73 13.48 0.00 14.42 0.00 0.00 0.00 0.00 15.48 0.00 13.48 0.00 0.00 14.29 0.00 0.00 10.00 0.00 11.82 10.10 K jcn_only_AD Csk,I_chr3R_7463337_7463512,I_chr3R_7468917_7472437,I_chr3R_7468917_7472509,I_chr3R_7468928_7472509 chr3R - chr3R_7468928_7472509 chr3R_7468928_7472437 chr3R_7468892_7468927;chr3R_7472510_7472537 42.86 NA NA NA NA NA NA NA 37.14 NA NA 42.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 44.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor SelR,I_chr3R_6691367_6692250,I_chr3R_6692461_6692530,I_chr3R_6694098_6694160 chr3R - chr3R_6689548_6692250 chr3R_6689581_6692250 chr3R_6692251_6692350;chr3R_6689071_6689547 14.04 10.47 11.11 29.79 6.52 6.82 9.52 12.31 11.43 18.87 9.52 9.30 17.65 13.79 12.68 17.07 0.00 18.75 10.53 14.04 9.68 15.38 20.00 15.07 16.67 18.18 19.35 14.29 16.00 16.42 17.50 17.39 19.23 12.86 22.92 35.71 15.75 17.86 8.40 17.70 14.04 13.79 12.20 12.20 16.87 13.68 8.45 17.95 9.64 10.00 10.67 14.29 7.27 14.67 11.32 15.19 10.98 18.75 K jcn_only_AD spi,I_chr2L_19569183_19577185,I_chr2L_19569227_19572142,I_chr2L_19569227_19577173 chr2L - chr2L_19571768_19577185 chr2L_19571768_19577173 chr2L_19571572_19571767;chr2L_19577186_19577273 2.94 3.75 3.19 1.93 2.78 1.42 3.21 4.67 2.56 0.00 5.47 4.29 2.10 4.07 3.85 3.19 2.50 4.55 2.99 2.90 6.18 0.00 4.13 5.66 1.71 2.04 4.68 8.51 7.35 4.15 2.08 3.23 2.94 3.51 1.67 2.91 1.92 3.37 2.77 2.33 2.27 1.77 4.29 2.56 3.30 4.87 2.66 4.00 1.92 2.43 2.47 1.81 2.35 1.90 1.41 3.90 4.53 5.17 K cassette Ect4,C_chr3L_8091754_8101552,I_chr3L_8091826_8092243,I_chr3L_8098397_8101385,I_chr3L_8098758_8101738,I_chr3L_8100030_8101385 chr3L + chr3L_8098758_8101385 chr3L_8098758_8099115;chr3L_8100030_8101385 chr3L_8099116_8100029 chr3L_8098658_8098757;chr3L_8101386_8101485 99.48 98.51 99.55 100.00 100.00 100.00 100.00 99.64 99.70 93.28 99.25 99.37 100.00 99.28 100.00 100.00 99.35 100.00 99.46 99.24 100.00 99.59 99.74 99.64 99.49 99.37 99.61 98.63 97.85 97.82 100.00 97.42 98.81 99.63 99.49 100.00 99.39 99.47 99.32 98.33 97.00 99.72 100.00 98.56 99.65 98.42 99.42 98.18 100.00 99.51 99.29 98.62 99.47 99.48 100.00 98.75 99.49 99.00 K multi_cassette CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2436229_2459590 chr3L_2436229_2439576;chr3L_2439831_2443389;chr3L_2443839_2443987;chr3L_2444088_2444498;chr3L_2446102_2459590 chr3L_2439577_2439830;chr3L_2443390_2443838;chr3L_2443988_2444087;chr3L_2444499_2446101 chr3L_2436209_2436228;chr3L_2459591_2459690 100.00 100.00 83.33 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 90.00 80.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 87.50 100.00 100.00 95.00 100.00 88.89 100.00 100.00 100.00 100.00 87.50 90.00 91.67 87.50 92.86 92.31 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 90.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 K intron_retention l(3)82Fd,I_chr3R_1147660_1148709 chr3R - chr3R_1120602_1121362 chr3R_1120601_1120602;chr3R_1121362_1121363 chr3R_1120028_1120601;chr3R_1121363_1121517 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 2.82 0.00 1.56 0.00 0.00 0.00 0.00 4.26 6.25 7.41 0.00 4.55 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 K alternative_donor RpL23A,E_chr3L_1667550_1667808,I_chr3L_1667736_1667806 chr3L - chr3L_1667736_1667808 chr3L_1667736_1667806 chr3L_1667636_1667735;chr3L_1667809_1667906 0.01 0.00 0.02 0.01 0.00 0.01 0.05 0.01 0.02 0.00 0.00 0.01 0.01 0.02 0.01 0.00 0.00 0.00 0.03 0.01 0.00 0.01 0.03 0.00 0.05 0.03 0.10 0.11 0.01 0.00 0.03 0.00 0.02 0.01 0.03 0.00 0.02 0.00 0.02 0.01 0.03 0.01 0.00 0.00 0.01 0.01 0.00 0.01 0.03 0.00 0.03 0.02 0.00 0.01 0.01 0.01 0.01 0.01 K intron_retention f-cup,RI_chr3R_9522069_9522165,I_chr3R_9524004_9524059,EI_chr3R_9524613_9524789 chr3R - chr3R_9522069_9522548 chr3R_9522068_9522069;chr3R_9522548_9522549 chr3R_9521969_9522068;chr3R_9522549_9522949 0.00 0.00 4.76 18.18 NA 0.00 0.00 0.00 2.44 NA 0.00 0.00 4.76 NA 0.00 5.56 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.35 0.00 NA 0.00 5.88 0.00 0.00 7.14 0.00 NA NA 0.00 0.00 0.00 0.00 4.76 5.26 0.00 0.00 0.00 3.33 0.00 5.71 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Aats-val chr2R + chr2R_9086429_9086478;chr2R_9086421_9086478 chr2R_9086425_9086478 chr2R_9086479_9086689;chr2R_9086375_9086420 95.83 NA 100.00 100.00 NA NA NA NA 90.62 NA NA NA NA NA 95.83 76.19 NA NA NA 88.00 NA NA NA NA NA 95.45 NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 93.10 NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA K intron_retention VhaPPA1-1,I_chr3R_10728476_10728933,RI_chr3R_10728613_10728929,I_chr3R_10728645_10728933 chr3R - chr3R_10728613_10728933 chr3R_10728612_10728613;chr3R_10728933_10728934 chr3R_10728545_10728612;chr3R_10728934_10729029 0.00 0.00 0.25 0.15 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.46 0.23 0.23 0.00 0.63 0.99 0.69 0.00 0.00 0.00 0.32 0.00 0.37 0.00 0.00 0.00 0.31 0.33 0.35 0.43 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7927,I_chr3L_8109906_8110404 chr3L + chr3L_8105539_8105593 chr3L_8105538_8105539;chr3L_8105593_8105594 chr3L_8105212_8105538;chr3L_8105594_8105814 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 4.55 1.67 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 1.79 0.00 0.00 0.00 0.00 K cassette CG14425,Sxl,CG14425_Sxl,CEFI_chrX_6981717_6984166,CEF_chrX_6984538_6992033 chrX - chrX_6981693_6985706 chrX_6981693_6982610;chrX_6982801_6985706 chrX_6982611_6982800 chrX_6981647_6981692;chrX_6985707_6985745 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor I_chr2L_13965397_13965694,nimB3,RI_chr2L_13967695_13967746 chr2L - chr2L_13967668_13967750 chr2L_13967695_13967750 chr2L_13967751_13967841;chr2L_13967595_13967667 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.46 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 98.65 98.39 98.48 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG14613,I_chrX_21882735_21883714 chrX - chrX_21872815_21872977 chrX_21872814_21872815;chrX_21872977_21872978 chrX_21872350_21872814;chrX_21872978_21873123 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 1.30 0.00 0.00 3.90 5.26 3.70 5.26 5.00 0.00 0.00 0.00 0.00 2.86 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 3.45 0.00 0.00 0.00 K jcn_only_AA RpS7,E_chr3R_26032339_26034298,I_chr3R_26034115_26034211,I_chr3R_26034118_26034211 chr3R - chr3R_26034118_26034211 chr3R_26034148_26034211 chr3R_26034212_26034311;chr3R_26034018_26034117 99.99 99.99 99.99 99.99 99.98 99.99 99.99 99.96 99.99 100.00 100.00 99.98 100.00 99.98 99.99 100.00 99.97 99.95 100.00 99.99 99.99 99.99 100.00 100.00 99.96 99.96 100.00 99.97 99.97 99.98 100.00 99.97 99.99 100.00 100.00 99.98 100.00 100.00 99.99 99.99 99.97 99.97 99.99 99.97 99.99 99.97 99.99 99.99 100.00 100.00 99.98 100.00 100.00 99.99 99.98 99.99 99.99 99.99 K intron_retention aPKC,I_chr2R_10833552_10833654,RI_chr2R_10849347_10850391 chr2R - chr2R_10834109_10834208 chr2R_10834108_10834109;chr2R_10834208_10834209 chr2R_10833982_10834108;chr2R_10834209_10834324 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 2.63 3.37 0.00 2.27 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Top3beta chrX - chrX_6178924_6179006 chrX_6178923_6178924;chrX_6179006_6179007 chrX_6178455_6178923;chrX_6179007_6179400 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 2.33 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 2.94 3.03 0.00 3.57 0.00 0.00 1.92 0.00 0.00 1.67 0.00 0.00 0.00 0.00 3.03 2.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 K intron_retention CG10337 chr2L - chr2L_19546137_19546202 chr2L_19546136_19546137;chr2L_19546202_19546203 chr2L_19545376_19546136;chr2L_19546203_19546403 4.17 0.00 0.00 4.17 0.00 0.00 6.45 1.61 9.84 NA 4.35 4.17 7.41 0.00 6.90 0.00 0.00 10.00 0.00 6.06 NA 0.00 0.00 0.00 9.52 0.00 8.33 8.33 12.50 NA 8.70 6.25 10.53 2.63 23.53 NA 0.00 0.00 4.76 4.00 8.33 6.06 4.76 0.00 6.67 12.50 4.55 NA 4.44 0.00 3.12 0.00 NA 0.00 0.00 0.00 NA NA N cassette Rip11,E_chrX_18532733_18533695,RI_chrX_18530353_18530870,RI_chrX_18530742_18530870,RI_chrX_18544139_18544185 chrX - chrX_18530353_18531445;chrX_18530353_18531363 chrX_18530353_18530646;chrX_18530907_18531445,chrX_18530907_18531363 chrX_18530647_18530906 chrX_18530253_18530352;chrX_18531446_18531606 79.29 73.06 90.84 91.07 59.70 58.16 70.38 80.80 79.29 83.52 75.83 91.90 90.57 84.50 80.95 95.16 71.14 82.50 78.39 85.60 80.46 86.25 80.30 73.71 69.84 84.30 77.68 77.34 78.67 88.74 86.19 89.48 87.99 79.94 74.87 76.20 78.78 75.82 70.02 87.46 85.89 77.49 81.96 76.72 72.44 83.22 75.91 89.58 78.46 79.23 74.85 79.40 77.03 73.93 82.17 72.94 77.84 89.97 K jcn_only_AA casp,EI_chr2R_11914764_11914841 chr2R - chr2R_11914769_11914841;chr2R_11914764_11914841 chr2R_11914784_11914841 chr2R_11914842_11914941;chr2R_11914664_11914763 79.66 85.25 73.86 76.47 88.71 87.50 71.57 75.96 82.64 75.86 66.67 79.82 82.76 86.49 85.53 82.98 75.00 84.21 85.00 82.50 87.04 85.14 72.12 77.94 77.78 79.41 83.95 93.33 67.12 74.70 79.31 76.36 87.80 78.41 79.66 77.42 77.63 74.32 82.09 81.33 72.83 83.45 80.85 76.04 91.53 84.69 82.54 71.09 77.12 87.88 79.31 76.36 79.41 76.74 82.95 79.31 80.95 83.19 N jcn_only_AA pan chr4 + chr4_106560_107642 chr4_106560_106634 chr4_106479_106559;chr4_107643_107792 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 K intron_retention Xrp1,I_chr3R_14741648_14750799,I_chr3R_14750298_14750799 chr3R + chr3R_14747042_14750799 chr3R_14747041_14747042;chr3R_14750799_14750800 chr3R_14746135_14747041;chr3R_14750800_14750899 1.36 0.62 2.39 2.69 0.95 1.83 4.12 2.30 2.10 0.37 4.41 1.44 3.47 2.31 1.15 1.69 1.19 1.42 1.95 2.73 2.47 1.29 1.27 1.07 0.70 1.40 2.11 3.05 0.84 2.42 0.25 0.00 0.60 1.62 1.90 1.79 0.83 1.13 0.72 1.41 1.21 1.96 1.03 1.36 0.66 1.37 0.75 2.28 1.95 0.65 1.73 1.14 0.00 0.57 1.32 0.47 0.47 0.53 K jcn_only_AD aralar1,CG15535,I_chr3R_26249362_26249414 chr3R - chr3R_26249362_26249431 chr3R_26249362_26249414 chr3R_26249262_26249361;chr3R_26249432_26249514 0.00 0.00 8.00 2.13 NA 0.00 0.00 0.00 2.00 NA 0.00 0.00 0.00 0.00 4.55 2.38 NA NA 0.00 0.00 3.45 NA 0.00 0.00 NA 0.00 NA NA NA NA 2.70 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 4.00 NA 0.00 0.00 NA 4.76 0.00 0.00 0.00 0.00 NA 0.00 3.57 5.00 NA 0.00 0.00 0.00 2.63 K alternative_donor I_chr3R_23749027_23749091,CG5508,E_chr3R_23755071_23758533 chr3R + chr3R_23751064_23751390;chr3R_23751068_23751390 chr3R_23751130_23751390 chr3R_23751391_23751715;chr3R_23750915_23751063 56.25 42.86 50.00 55.56 57.14 55.56 NA 60.00 56.25 33.33 NA 58.82 50.00 46.67 44.44 NA NA 57.14 62.50 73.33 NA 58.33 NA 57.14 NA 50.00 NA NA NA NA 58.33 NA 40.00 61.11 57.14 NA 80.00 NA NA 55.56 NA 60.00 NA NA NA 45.45 50.00 NA 68.75 NA NA NA NA 50.00 50.00 NA 58.33 NA K alternative_donor Abi,RI_chr3R_9946195_9946332 chr3R - chr3R_9947835_9948084 chr3R_9947835_9947999 chr3R_9947468_9947834;chr3R_9948085_9948101 98.91 98.00 98.36 100.00 100.00 100.00 100.00 98.94 99.21 100.00 100.00 97.96 100.00 100.00 94.37 98.90 98.08 97.92 98.21 99.31 100.00 100.00 98.84 98.53 100.00 96.08 100.00 96.43 95.65 100.00 98.44 100.00 99.18 98.91 97.96 100.00 98.73 98.33 96.83 99.15 100.00 98.13 97.73 100.00 98.92 100.00 94.34 99.32 99.01 94.87 98.65 93.62 98.04 100.00 98.31 97.78 98.59 99.38 K alternative_donor CG33298 chr2L + chr2L_9495712_9503592;chr2L_9495657_9503592 chr2L_9496256_9503592 chr2L_9503593_9504813;chr2L_9495488_9495656 89.28 87.50 81.82 95.24 75.00 80.00 95.65 92.31 90.00 NA 83.33 100.00 75.00 92.86 90.00 89.66 91.67 100.00 88.89 93.75 63.64 70.00 85.71 100.00 100.00 100.00 100.00 100.00 75.00 80.00 100.00 NA 83.33 78.57 100.00 100.00 60.00 66.67 50.00 70.00 75.00 84.62 90.91 100.00 NA 75.00 NA 83.33 91.67 100.00 85.71 80.00 NA NA 84.62 NA 100.00 100.00 K intron_retention Trf4-1,I_chrX_8459198_8459266 chrX + chrX_8457581_8457692 chrX_8457580_8457581;chrX_8457692_8457693 chrX_8457186_8457580;chrX_8457693_8458408 78.95 74.47 80.00 82.35 72.73 58.54 75.00 86.15 80.18 76.19 73.17 65.00 72.73 82.93 79.59 81.63 75.76 80.95 81.58 81.82 77.78 74.63 86.84 75.47 86.67 77.78 92.00 82.61 68.89 76.19 87.88 82.76 80.00 76.67 78.95 69.44 85.71 70.83 79.63 73.33 89.29 72.92 90.91 75.44 65.62 72.73 75.00 83.33 79.73 90.91 77.05 93.10 78.12 72.73 84.78 75.00 89.66 92.45 K intron_retention Tcp-1zeta,CG8239 chrX + chrX_15640941_15641340 chrX_15640940_15640941;chrX_15641340_15641341 chrX_15640687_15640940;chrX_15641341_15643119 0.00 0.00 0.00 0.22 0.29 0.00 0.00 0.20 0.27 0.00 0.00 0.16 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.26 0.00 0.00 0.26 0.62 0.29 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.40 0.00 0.00 0.33 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.50 K jcn_only_AA sd,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15717261_15717340 chrX_15717261_15717325 chrX_15717220_15717260;chrX_15717341_15717515 42.42 25.00 33.33 41.67 31.03 42.42 42.11 46.97 43.04 NA 54.05 36.84 31.03 37.14 41.03 46.81 38.89 50.00 32.56 35.71 48.15 66.67 46.15 33.33 66.67 46.88 57.14 29.17 NA 65.22 38.00 NA 69.57 32.35 62.07 47.06 NA NA 34.38 62.07 60.00 48.53 34.15 32.00 55.00 31.82 40.00 53.66 46.48 40.91 25.64 NA NA NA 45.83 NA NA 55.17 K jcn_only_AA brm,I_chr3L_15968197_15968325 chr3L - chr3L_15975664_15975902 chr3L_15975669_15975902 chr3L_15975903_15975928;chr3L_15975368_15975663 92.81 93.33 100.00 94.03 95.12 87.88 92.86 98.11 92.71 100.00 86.05 94.59 95.45 89.19 95.12 90.57 84.09 89.19 94.34 99.01 95.00 94.74 94.44 90.16 97.37 90.48 88.00 97.14 NA 92.31 98.04 NA 91.55 92.77 84.38 100.00 92.31 94.74 95.45 90.00 93.55 92.93 91.30 100.00 85.29 96.43 84.85 89.58 91.89 91.43 90.48 92.11 95.24 NA 94.44 88.46 92.00 86.67 K alternative_donor CG5484 chr3R + chr3R_22543749_22544049;chr3R_22543734_22544049 chr3R_22543722_22544049 chr3R_22544050_22544588;chr3R_22543570_22543721 94.83 96.70 92.31 95.96 97.01 94.92 96.91 98.26 97.45 97.92 98.90 90.99 97.18 92.45 96.59 87.01 97.10 100.00 96.88 96.48 98.28 82.09 92.52 95.56 92.98 91.53 87.93 92.31 90.48 96.61 84.29 97.30 91.11 97.00 93.62 94.74 95.97 95.45 93.42 89.77 89.29 94.85 93.44 93.02 89.66 92.59 94.05 94.83 92.98 92.75 88.76 95.71 94.12 95.56 92.54 95.65 98.86 98.25 K jcn_only_AA CG3651,I_chr2L_22124217_22124661,I_chr2L_22124698_22124781 chr2L + chr2L_22124217_22124786;chr2L_22124217_22124661 chr2L_22124217_22124781 chr2L_22124117_22124216;chr2L_22124787_22124881 96.76 98.21 98.04 95.60 95.62 94.40 94.20 97.62 98.25 95.58 96.61 95.49 95.24 96.45 96.95 96.14 95.38 96.81 96.20 97.22 97.27 98.00 95.79 98.67 95.35 96.84 96.57 97.46 96.36 95.52 97.73 98.51 97.67 95.71 95.16 97.46 96.88 96.79 96.92 95.34 97.13 96.31 94.95 96.69 97.78 97.70 96.51 98.12 96.71 95.48 94.74 98.62 95.18 98.11 97.45 96.76 99.41 97.05 K intron_retention CG17184 chr3R - chr3R_7059047_7059123 chr3R_7059046_7059047;chr3R_7059123_7059124 chr3R_7058939_7059046;chr3R_7059124_7059292 1.04 0.00 1.77 3.03 0.00 0.00 0.58 1.08 1.21 3.45 0.00 1.35 0.00 1.52 0.00 1.61 2.35 1.90 2.17 1.04 2.27 1.45 0.00 2.08 6.52 3.95 2.22 0.00 8.70 0.00 3.36 0.00 0.00 0.00 0.00 0.00 0.81 0.00 2.56 1.33 0.00 0.49 2.30 0.00 0.00 1.16 0.00 0.00 2.55 0.00 1.98 0.00 0.00 1.49 3.70 1.03 2.52 0.00 K intron_retention RI_chr2R_17599884_17602910,HmgD,RI_chr2R_17600940_17602910,I_chr2R_17600947_17602910,I_chr2R_17601672_17603325,I_chr2R_17602490_17602910 chr2R + chr2R_17601672_17602910 chr2R_17601671_17601672;chr2R_17602910_17602911 chr2R_17601645_17601671;chr2R_17602911_17603010 3.30 15.00 1.96 2.22 0.00 0.00 9.09 2.38 8.64 NA 0.00 10.42 3.23 11.11 3.17 2.27 4.76 0.00 2.38 1.83 0.00 NA NA NA NA 5.88 NA NA NA NA 4.88 4.76 4.55 3.30 NA NA NA NA NA 25.93 NA 6.96 0.00 NA 0.00 NA NA 17.65 4.55 NA NA NA 11.76 NA 2.00 NA NA 4.00 K intron_retention glo,I_chr3R_7643675_7643727,REI_chr3R_7644679_7644932,RI_chr3R_7644683_7644880,I_chr3R_7647556_7647628 chr3R - chr3R_7642480_7643727 chr3R_7642479_7642480;chr3R_7643727_7643728 chr3R_7642334_7642479;chr3R_7643728_7643827 30.77 41.18 NA 40.00 NA NA 38.89 57.14 50.00 15.38 NA 34.62 46.15 53.33 33.33 56.25 66.67 NA 46.15 48.00 NA NA 22.58 29.63 13.64 NA 24.24 NA 22.73 22.22 3.45 30.77 36.84 44.44 31.58 56.25 16.67 NA 16.67 27.78 NA 45.83 53.33 21.05 26.32 33.33 25.00 30.77 23.53 28.57 20.00 25.00 17.65 20.00 NA 19.05 22.73 30.77 K jcn_only_AA E(z),RI_chr3L_10629194_10629525,RI_chr3L_10629541_10629723 chr3L - chr3L_10629194_10629723 chr3L_10629541_10629723 chr3L_10629724_10629823;chr3L_10629096_10629193 0.00 1.79 0.00 0.00 2.22 1.39 1.33 1.19 1.60 0.00 0.00 0.00 1.47 1.89 0.00 0.00 2.13 0.00 0.00 1.86 0.00 0.00 0.63 0.83 6.25 1.82 0.00 0.00 1.61 4.29 5.77 0.00 0.00 0.00 3.12 8.70 0.95 2.50 0.00 0.00 1.69 0.00 1.79 0.00 0.00 0.00 0.88 0.00 0.00 0.87 1.42 0.00 0.00 0.00 0.00 0.00 0.82 0.00 K jcn_only_AA iPLA2-VIA chr3L - chr3L_9857200_9857292;chr3L_9857015_9857292 chr3L_9856717_9857292 chr3L_9857293_9857459 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 97.83 100.00 100.00 100.00 98.51 100.00 100.00 100.00 100.00 100.00 98.44 98.32 99.11 100.00 100.00 100.00 96.36 100.00 95.83 100.00 98.77 100.00 100.00 99.12 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 96.15 100.00 100.00 97.62 100.00 100.00 100.00 98.48 97.50 100.00 100.00 100.00 100.00 100.00 K intron_retention Dsp1,I_chrX_16228447_16229355,I_chrX_16231287_16231413 chrX + chrX_16228447_16230299 chrX_16228446_16228447;chrX_16230299_16230300 chrX_16228347_16228446;chrX_16230300_16230776 19.52 NA 25.00 15.38 NA 7.14 35.00 19.05 13.51 14.29 NA 6.90 NA 20.00 25.00 13.79 15.38 14.29 NA 21.88 NA 16.67 22.22 21.43 NA NA 24.00 25.00 NA NA NA NA NA 25.00 NA NA NA NA 14.29 15.38 NA 29.17 25.00 33.33 NA NA NA NA 18.52 NA NA NA NA NA 25.00 NA 16.67 NA K intron_retention Vap-33-1 chrX + chrX_3846075_3846140 chrX_3846074_3846075;chrX_3846140_3846141 chrX_3846036_3846074;chrX_3846141_3846254 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG31955,RI_chr2L_3712446_3712767 chr2L - chr2L_3712446_3712767 chr2L_3712445_3712446;chr2L_3712767_3712768 chr2L_3712346_3712445;chr2L_3712768_3712862 76.47 57.89 73.68 83.33 80.00 76.47 86.27 79.27 80.18 70.00 85.71 79.31 75.00 77.50 79.55 88.52 82.35 78.57 83.67 68.48 76.00 95.45 62.50 65.75 63.33 81.82 87.18 94.74 76.19 72.97 70.27 77.50 83.87 89.55 75.68 81.25 61.54 32.26 56.14 80.28 78.26 82.05 79.55 51.11 65.91 76.47 68.12 73.33 82.05 59.76 73.02 67.31 60.32 58.62 79.55 47.30 60.49 79.71 K jcn_only_AA CG34349,I_chr3R_20889373_20889414 chr3R + chr3R_20883627_20885930 chr3R_20883627_20885077 chr3R_20883558_20883626 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA 0.00 3.33 NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD Eno,EI_chr2L_1727403_1727645,I_chr2L_1728229_1728302 chr2L - chr2L_1728233_1728361 chr2L_1728233_1728302 chr2L_1728054_1728232;chr2L_1728362_1728402 95.24 91.30 95.24 72.73 NA NA 80.95 89.29 90.00 NA NA 98.36 NA NA NA 88.10 NA NA 100.00 89.29 NA NA 92.59 89.66 NA NA NA NA NA 100.00 94.74 NA 95.65 97.50 NA NA NA NA NA 89.66 NA 96.67 NA 86.96 95.24 100.00 86.21 95.65 95.35 NA 100.00 NA NA 95.24 95.45 NA NA 100.00 K alternative_acceptor Adam,I_chr2R_5856741_5856974,I_chr2R_5856741_5857245,I_chr2R_5857058_5857250,I_chr2R_5857078_5857245 chr2R + chr2R_5857058_5857250 chr2R_5857058_5857245 chr2R_5856978_5857057;chr2R_5857251_5857345 100.00 98.94 100.00 99.23 100.00 100.00 100.00 100.00 99.47 98.85 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.27 98.55 100.00 99.10 100.00 99.23 100.00 100.00 100.00 100.00 99.14 100.00 98.65 99.42 100.00 100.00 99.55 99.04 100.00 98.57 99.22 100.00 99.36 99.16 100.00 100.00 99.23 98.17 100.00 100.00 100.00 100.00 100.00 99.32 100.00 K intron_retention Vago chrX + chrX_10983693_10983758 chrX_10983692_10983693;chrX_10983758_10983759 chrX_10983559_10983692;chrX_10983759_10984138 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA 1.96 0.00 K jcn_only_AA Psi,RI_chr2R_12752536_12752596,I_chr2R_12753387_12753659 chr2R - chr2R_12752536_12752596;chr2R_12752539_12752596 chr2R_12752542_12752596 chr2R_12752597_12752696;chr2R_12752436_12752535 33.33 45.71 43.59 40.98 54.84 25.71 26.47 42.86 26.15 40.00 46.15 34.67 18.18 26.92 26.19 39.39 41.03 41.67 33.33 28.07 38.89 40.74 42.50 33.33 NA 29.27 37.50 35.00 23.26 27.14 41.67 40.74 28.26 38.98 NA 30.95 32.79 30.77 45.71 31.85 32.35 34.48 24.14 30.00 26.09 38.30 32.35 38.04 37.88 37.50 29.03 NA 20.45 33.33 28.85 28.12 26.67 34.55 N alternative_acceptor I_chrX_16309561_16309689,hang,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16323441_16323563;chrX_16323441_16324653 chrX_16323441_16323548 chrX_16323093_16323440;chrX_16324654_16324797 9.30 9.86 5.26 8.57 6.56 7.69 8.18 3.94 9.32 11.54 6.12 8.33 7.69 6.45 10.39 9.80 6.00 5.63 6.49 9.34 4.35 24.09 8.07 10.99 9.46 6.25 7.34 9.86 15.85 10.10 5.97 10.53 14.75 6.34 10.91 13.41 11.94 10.53 10.14 10.53 6.38 7.89 6.45 12.50 13.51 8.00 8.89 14.29 6.98 9.30 7.20 10.42 8.70 10.00 7.41 9.68 10.00 16.13 K intron_retention trio,I_chr3L_999683_1009321 chr3L - chr3L_1003822_1007216 chr3L_1003821_1003822;chr3L_1007216_1007217 chr3L_1003728_1003821;chr3L_1007217_1007645 1.02 0.80 3.54 2.03 0.00 0.00 1.75 0.00 1.67 1.02 0.00 1.83 0.00 0.00 0.72 1.39 0.00 0.00 1.02 1.33 4.05 2.04 3.68 0.00 5.88 0.00 4.14 4.55 2.21 0.00 5.21 0.00 1.23 1.09 0.72 1.45 1.59 0.00 0.85 1.00 1.12 1.83 2.38 0.58 0.00 0.62 0.97 0.70 0.91 2.56 1.59 3.09 1.98 0.00 1.61 0.00 2.14 0.67 K intron_retention I_chr2R_16518342_16520460,I_chr2R_16518620_16518916,RI_chr2R_16520388_16520855,rig chr2R - chr2R_16522194_16522251 chr2R_16522193_16522194;chr2R_16522251_16522252 chr2R_16521936_16522193;chr2R_16522252_16522402 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 2.56 0.00 4.26 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention sqd,I_chr3R_9462248_9471474,I_chr3R_9468150_9468236,I_chr3R_9470417_9471474 chr3R - chr3R_9468150_9468233 chr3R_9468149_9468150;chr3R_9468233_9468234 chr3R_9468050_9468149;chr3R_9468234_9468301 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.23 1.05 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.21 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA Droj2,RI_chr3R_9207981_9208471,RI_chr3R_9208529_9209185 chr3R + chr3R_9207981_9209185;chr3R_9207981_9208471 chr3R_9207981_9209956 chr3R_9207926_9207980;chr3R_9209957_9210301 1.67 0.00 0.00 18.57 0.00 0.00 2.47 6.48 2.04 0.00 0.00 3.03 3.09 3.02 0.00 1.03 0.00 0.00 2.18 0.00 0.00 2.09 1.67 0.00 5.45 8.57 4.28 3.71 1.82 1.58 0.00 2.68 0.00 2.76 0.00 1.32 2.70 2.40 2.52 1.48 3.13 1.77 0.00 3.39 3.26 1.95 0.00 1.26 2.14 0.00 1.59 0.00 1.16 0.00 2.04 1.85 2.69 1.01 K alternative_donor CG3632,RI_chrX_16195880_16196242 chrX + chrX_16190941_16191682;chrX_16190917_16191682 chrX_16190824_16191682 chrX_16191683_16191751;chrX_16190763_16190823 12.50 12.50 9.09 23.08 20.00 25.00 5.26 9.09 8.70 NA 16.67 21.05 12.50 12.50 8.33 15.00 10.00 16.67 16.67 5.00 33.33 11.11 12.50 12.50 14.29 30.00 12.50 14.29 0.00 14.29 0.00 NA 20.00 10.53 14.29 16.67 57.14 12.50 0.00 14.29 NA 5.88 0.00 12.50 NA 0.00 0.00 11.11 15.00 16.67 9.09 25.00 20.00 NA 11.11 20.00 NA NA K alternative_donor ttk,I_chr3R_27554202_27554334,I_chr3R_27554601_27555353 chr3R + chr3R_27550933_27552853 chr3R_27551054_27552853 chr3R_27552854_27553156;chr3R_27550864_27550932 100.00 100.00 100.00 100.00 100.00 90.91 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 94.74 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 K intron_retention Cdc37,CG12020 chr3L + chr3L_1795733_1795792 chr3L_1795732_1795733;chr3L_1795792_1795793 chr3L_1795600_1795732;chr3L_1795793_1795996 0.00 0.00 0.00 0.73 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.89 1.69 2.24 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.47 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 K jcn_only_AA CG18604,I_chr2R_14589693_14590032 chr2R + chr2R_14589693_14590032 chr2R_14589693_14590023 chr2R_14589593_14589692;chr2R_14590033_14590132 85.00 83.33 90.00 77.78 90.91 80.00 NA 86.11 79.03 85.00 NA 87.23 NA 77.27 85.71 92.86 84.62 90.91 NA 87.93 76.19 83.56 89.80 80.43 93.10 NA 85.00 69.70 92.31 81.58 NA NA 94.74 90.62 87.50 89.29 74.58 91.43 77.55 77.78 NA 92.45 NA 80.00 80.00 97.14 80.00 85.71 92.68 87.50 88.89 NA 81.08 77.27 77.42 84.62 79.31 NA K intron_retention CG3815 chrX + chrX_6192265_6192335 chrX_6192264_6192265;chrX_6192335_6192336 chrX_6190742_6192264;chrX_6192336_6193020 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA 4.76 7.69 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.50 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Pgi,I_chr2R_4800674_4800937,I_chr2R_4800693_4800761 chr2R - chr2R_4800693_4800937 chr2R_4800693_4800761 chr2R_4800593_4800692;chr2R_4800938_4801037 1.71 3.88 0.97 0.60 1.12 3.41 1.23 0.71 1.71 4.40 0.00 2.02 1.22 0.00 0.00 0.00 1.41 0.00 0.00 1.38 1.01 4.85 3.10 6.09 3.08 0.00 1.83 5.05 5.61 2.30 1.59 0.00 5.76 0.61 1.41 3.16 2.75 0.89 5.37 2.15 0.00 0.47 0.00 3.23 1.72 1.90 2.44 2.36 1.35 2.42 1.91 0.00 1.67 3.37 1.96 0.00 2.70 2.17 K jcn_only_AA Psn,RI_chr3L_20430213_20430358 chr3L + chr3L_20425808_20425896 chr3L_20425808_20425866 chr3L_20425774_20425807;chr3L_20425897_20426106 95.95 97.44 85.54 88.10 93.40 88.46 96.72 95.65 96.11 91.94 96.00 92.42 92.75 96.20 94.02 97.56 92.86 92.31 97.10 96.35 90.00 98.44 91.92 96.74 94.92 91.01 92.93 93.88 98.88 94.29 98.46 91.38 96.43 96.03 97.56 93.18 96.55 95.95 96.46 97.94 100.00 94.15 88.46 100.00 96.55 96.05 91.30 100.00 97.60 93.20 93.65 98.33 97.83 90.62 91.95 93.24 96.59 98.39 K multi_cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27761114_27762991,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27707594_27801169 chr3R_27707594_27784756;chr3R_27784850_27795477;chr3R_27795508_27801169 chr3R_27784757_27784849;chr3R_27795478_27795507 chr3R_27707494_27707593;chr3R_27801170_27801219 80.00 NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8088454_8089184;chr2L_8088454_8088609;chr2L_8088454_8089356;chr2L_8088454_8089490;chr2L_8088454_8088664 chr2L_8088454_8089057 chr2L_8088448_8088453 0.00 NA 4.35 0.00 NA NA 0.00 1.79 0.00 NA NA 0.00 4.76 0.00 0.00 2.70 NA 0.00 0.00 1.03 0.00 NA 0.00 0.00 0.00 3.70 NA NA NA NA 2.78 NA 0.00 1.32 0.00 0.00 NA NA NA 0.00 0.00 0.00 3.23 0.00 NA 0.00 NA NA 1.03 NA 0.00 NA 0.00 NA 0.00 0.00 NA NA K alternative_acceptor moody chrX - chrX_1939981_1940048 chrX_1939983_1940048 chrX_1940049_1940544;chrX_1938363_1939980 30.77 28.57 46.15 47.62 25.00 35.71 22.22 31.82 37.84 26.67 11.76 33.33 NA 50.00 41.18 38.46 20.00 29.41 36.36 36.84 30.77 34.78 22.73 25.49 22.73 30.77 33.33 43.75 35.00 26.47 30.77 26.32 23.08 37.04 23.08 33.33 33.77 29.79 32.65 32.43 36.36 34.21 23.08 25.64 34.62 20.45 21.62 32.14 24.39 30.56 30.95 42.31 30.77 21.88 20.00 41.38 27.78 NA K alternative_acceptor Fps85D,I_chr3R_5194729_5194776,I_chr3R_5216796_5218450 chr3R - chr3R_5198991_5199052 chr3R_5199003_5199052 chr3R_5199053_5199389;chr3R_5198712_5198990 2.27 3.51 2.04 1.59 0.00 2.22 1.47 1.54 2.40 2.27 4.88 3.12 3.57 1.96 3.12 2.63 2.27 1.92 2.38 2.73 2.00 0.95 1.23 1.43 2.78 2.38 1.59 0.00 3.39 1.67 4.76 0.00 0.00 1.52 2.33 2.22 2.88 5.00 3.51 1.06 2.13 3.85 3.45 1.00 4.65 5.17 4.44 2.70 2.38 3.92 1.15 1.82 4.17 0.00 3.28 0.00 2.50 0.00 K intron_retention Rme-8 chr2R - chr2R_5056301_5056360 chr2R_5056300_5056301;chr2R_5056360_5056361 chr2R_5056178_5056300;chr2R_5056361_5056736 0.00 0.00 2.94 2.75 2.86 0.00 2.88 1.87 1.80 0.00 0.00 0.00 1.49 0.00 0.00 2.50 1.45 2.86 1.49 1.23 0.00 3.90 0.00 0.00 10.87 0.00 2.90 0.00 3.23 0.00 3.61 0.00 0.00 0.88 0.00 3.85 1.20 0.00 0.00 0.00 9.09 0.00 0.00 2.22 3.12 3.39 0.00 0.00 1.50 0.00 0.00 0.00 0.00 0.00 1.41 2.74 0.00 0.00 K jcn_only_AA I_chr3L_18664773_18665233,GNBP2,I_chr3L_18667579_18667644 chr3L - chr3L_18667579_18667644 chr3L_18667583_18667644 chr3L_18667645_18667712;chr3L_18667514_18667578 98.46 97.46 97.32 98.12 100.00 98.02 99.24 99.38 98.88 91.49 100.00 99.05 100.00 97.26 100.00 97.25 98.55 98.59 98.89 100.00 100.00 98.31 97.28 98.46 97.73 97.26 98.80 100.00 97.26 98.82 92.41 98.61 97.80 99.18 95.65 97.67 98.12 96.06 98.91 95.41 93.10 98.46 98.36 99.19 100.00 98.33 96.58 95.92 98.82 100.00 96.95 96.88 100.00 98.90 96.94 100.00 96.83 98.72 K intron_retention Pld,I_chr2R_2130639_2136916,RI_chr2R_2138358_2141112 chr2R + chr2R_2129606_2130035 chr2R_2129605_2129606;chr2R_2130035_2130036 chr2R_2129572_2129605;chr2R_2130036_2130224 100.00 NA 100.00 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 NA NA 100.00 100.00 NA NA 87.50 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD I_chrX_4000307_4003527,CG4857 chrX + chrX_4014458_4014534 chrX_4014474_4014534 chrX_4014535_4014601;chrX_4014329_4014457 2.95 0.00 1.92 0.79 6.52 3.64 7.89 0.78 5.41 NA 0.00 0.76 6.45 0.00 2.78 1.15 0.00 4.55 4.00 6.48 0.00 4.05 3.30 3.28 8.57 2.82 1.75 8.00 4.65 1.67 3.92 4.35 0.00 5.60 2.22 3.08 0.00 0.00 0.00 3.96 3.33 1.69 1.43 1.82 0.00 6.45 4.00 1.92 4.29 10.71 1.54 5.66 NA 0.00 0.00 5.41 NA 3.57 K cassette CG2698,I_chr3R_3828169_3828254,I_chr3R_3828169_3828941,I_chr3R_3828880_3828941,I_chr3R_3829483_3829715,I_chr3R_3830586_3830981 chr3R + chr3R_3828169_3828941 chr3R_3828169_3828275;chr3R_3828882_3828941 chr3R_3828276_3828881 chr3R_3828069_3828168;chr3R_3828942_3829007 100.00 100.00 100.00 98.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.78 100.00 100.00 100.00 100.00 100.00 98.41 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention eco chr3L - chr3L_7328976_7329037 chr3L_7328975_7328976;chr3L_7329037_7329038 chr3L_7328534_7328975;chr3L_7329038_7332092 0.00 0.00 2.08 0.00 0.00 0.00 2.22 0.00 2.38 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 3.19 1.15 0.00 0.00 5.17 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 1.79 1.49 0.00 0.00 N intron_retention Adgf-A,Msi,F_chr3L_17749926_17757161 chr3L - chr3L_17756677_17757161 chr3L_17756676_17756677;chr3L_17757161_17757162 chr3L_17755701_17756676;chr3L_17757162_17757241 9.09 NA NA 21.05 NA NA 38.46 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 9.09 0.00 NA NA NA 7.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 23.08 NA NA NA NA NA NA NA NA NA NA K alternative_acceptor I_chr3R_22696095_22697413,Rb97D chr3R - chr3R_22699278_22699581 chr3R_22699401_22699581 chr3R_22699582_22699720;chr3R_22698253_22699277 62.96 60.00 57.14 81.25 57.14 62.96 73.21 74.07 61.18 55.32 66.67 66.67 69.70 75.00 62.96 76.47 74.07 73.91 66.67 64.06 47.62 25.00 62.75 63.16 63.33 64.00 62.79 73.68 56.00 54.29 68.97 60.87 35.48 67.86 63.33 60.00 43.75 46.34 45.10 60.00 70.59 61.11 62.07 58.33 40.00 57.78 63.04 66.67 72.13 56.25 58.49 65.52 65.52 64.10 71.88 60.00 59.18 66.67 K jcn_only_AA CG31344,RI_chr3R_11050688_11050804,I_chr3R_11054902_11054955 chr3R - chr3R_11050657_11050804 chr3R_11050688_11050804 chr3R_11050805_11050904;chr3R_11050588_11050656 2.04 2.78 0.00 2.00 3.33 5.41 0.00 2.27 1.32 0.00 0.00 0.00 0.00 0.00 0.00 6.67 4.17 0.00 0.00 1.64 0.00 13.04 2.08 8.51 15.00 NA 0.00 NA 0.00 0.00 6.56 NA NA 2.44 NA NA 12.00 0.00 11.36 3.57 NA 0.00 0.00 15.00 NA 9.09 5.13 NA 1.23 9.09 0.00 4.00 NA 4.76 5.26 3.70 0.00 NA K cassette Stim chrX - chrX_15830468_15831623 chrX_15830468_15830831;chrX_15831065_15831623 chrX_15830832_15831064 chrX_15830352_15830467;chrX_15831624_15831787 99.28 100.00 99.22 99.08 100.00 99.14 97.96 99.53 99.60 100.00 97.73 99.56 98.04 100.00 99.29 99.45 99.07 100.00 99.24 98.62 98.41 99.36 98.64 99.28 98.91 99.32 99.26 100.00 98.51 99.17 96.53 100.00 98.10 98.00 100.00 97.64 99.18 99.12 99.31 99.49 97.74 99.60 99.03 100.00 99.32 99.45 99.13 99.40 99.24 99.05 99.28 100.00 100.00 98.73 100.00 99.15 99.40 99.67 K jcn_only_AD HSPC300,I_chr2R_19915648_19915744,I_chr2R_19915648_19915903,I_chr2R_19915648_19916060 chr2R - chr2R_19915648_19916136;chr2R_19915648_19915903 chr2R_19915648_19915744 chr2R_19915548_19915647;chr2R_19916137_19916160 0.60 0.89 0.00 0.00 0.00 1.15 0.00 0.35 0.61 1.98 3.33 0.72 0.75 1.39 0.53 0.00 0.00 1.37 0.00 0.84 2.13 0.00 0.00 2.08 1.85 0.53 1.33 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.86 0.00 4.00 2.04 1.22 0.60 0.00 0.96 0.86 0.00 0.71 0.24 0.68 0.00 1.03 2.86 1.60 0.00 0.53 1.36 0.45 0.70 0.50 0.38 K alternative_acceptor Tif-IA,RI_chr2L_22250854_22257652 chr2L + chr2L_22253333_22253424;chr2L_22253333_22253421 chr2L_22253333_22253386 chr2L_22253256_22253332;chr2L_22253425_22253685 39.06 43.04 40.00 44.79 45.71 39.34 31.30 37.50 37.31 40.91 37.14 37.23 38.57 38.46 38.27 40.61 43.08 38.64 42.27 38.32 38.64 37.50 38.71 41.76 41.30 43.94 38.62 42.86 42.31 41.30 33.90 37.84 46.34 36.48 39.13 40.74 38.89 39.06 38.57 39.09 45.61 38.17 38.16 38.03 39.29 37.21 41.30 39.62 38.93 38.03 41.23 37.70 45.45 38.64 41.38 40.58 38.46 49.25 K alternative_donor wdb,I_chr3R_23394314_23406731,I_chr3R_23394314_23406794,I_chr3R_23394314_23407159,RI_chr3R_23394314_23407186,I_chr3R_23394314_23407412,I_chr3R_23394314_23407715,I_chr3R_23394314_23407721,RI_chr3R_23406048_23406731,RI_chr3R_23406048_23406794,I_chr3R_23406048_23406928,RI_chr3R_23406048_23407402 chr3R - chr3R_23406048_23406928;chr3R_23406048_23406865;chr3R_23406048_23407723 chr3R_23406048_23407402 chr3R_23405948_23406047;chr3R_23407724_23407815 15.38 11.11 10.34 8.11 7.69 25.00 16.67 13.51 16.28 25.00 42.31 6.67 37.50 12.50 13.79 8.00 9.52 52.38 18.75 20.00 26.92 4.94 9.52 29.03 11.11 26.32 11.76 25.00 37.21 19.23 17.39 15.79 23.08 20.59 11.11 23.08 7.14 12.50 20.00 8.33 23.08 11.11 23.53 5.00 18.18 13.04 6.25 33.33 6.98 21.74 12.20 47.06 8.33 0.00 10.71 10.53 15.38 25.00 K alternative_acceptor CG17233,I_chr3L_20232803_20232962,RI_chr3L_20232898_20232962 chr3L - chr3L_20232648_20232962;chr3L_20232714_20232962;chr3L_20232711_20232962 chr3L_20232645_20232962 chr3L_20232963_20233016;chr3L_20232147_20232644 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 7.14 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 4.00 3.33 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 5.00 5.26 0.00 0.00 K intron_retention CG15094 chr2R - chr2R_14683912_14683981 chr2R_14683911_14683912;chr2R_14683981_14683982 chr2R_14683775_14683911;chr2R_14683982_14684238 4.81 4.72 3.30 8.59 4.44 3.21 6.82 3.51 5.06 11.11 6.19 3.45 3.42 4.58 4.57 1.97 1.25 3.77 2.82 2.68 3.08 8.11 7.38 4.58 15.15 10.26 4.85 9.80 10.38 6.52 8.20 4.49 5.10 3.72 4.20 17.44 11.02 6.62 3.36 6.67 5.71 4.81 2.97 3.70 3.12 4.94 3.48 11.48 3.61 5.65 4.83 6.67 3.30 6.49 4.82 5.34 0.72 1.79 K jcn_only_AA CG30122,I_chr2R_14526123_14526189 chr2R - chr2R_14521791_14523647 chr2R_14522447_14523647 chr2R_14523648_14523776 97.83 96.15 97.27 99.65 98.20 98.54 97.11 99.23 99.00 98.44 100.00 97.45 95.04 94.96 98.96 100.00 97.83 100.00 97.02 95.17 100.00 96.00 97.67 93.71 97.00 99.02 95.45 96.83 95.77 99.02 92.44 94.64 98.51 97.99 97.85 97.59 91.58 88.89 96.30 93.47 98.68 99.72 99.26 91.00 98.37 94.64 99.17 96.88 98.32 96.85 92.90 97.92 98.73 96.88 99.12 99.33 99.21 98.86 K intron_retention CG12024,REI_chr3L_1857404_1857509 chr3L + chr3L_1857404_1857509 chr3L_1857403_1857404;chr3L_1857509_1857510 chr3L_1857304_1857403;chr3L_1857510_1857609 28.18 25.00 25.00 25.00 28.57 NA NA 22.73 35.29 15.00 29.41 20.00 NA NA 35.29 NA NA NA NA 28.57 50.00 38.46 19.23 19.05 16.67 NA 24.14 33.33 50.00 21.74 NA NA 20.00 37.50 10.00 36.00 25.00 25.00 26.67 36.00 46.67 34.48 45.45 30.43 33.33 29.17 17.86 35.00 38.10 21.88 23.08 30.00 11.11 15.79 40.00 27.78 22.58 39.13 K alternative_donor Sans,RI_chr2R_8825985_8826072,I_chr2R_8826501_8826591 chr2R + chr2R_8824602_8825904;chr2R_8824493_8825904 chr2R_8824595_8825904 chr2R_8825905_8825980;chr2R_8824445_8824492 50.00 NA NA 57.14 NA NA NA NA 42.86 NA 100.00 40.00 NA NA NA NA NA NA 50.00 55.56 NA NA 40.00 60.00 NA NA NA NA NA NA 60.00 NA 62.50 50.00 60.00 50.00 50.00 50.00 NA NA NA 50.00 NA 40.00 40.00 44.44 50.00 33.33 44.44 NA 71.43 50.00 40.00 NA 60.00 28.57 33.33 46.15 K intron_retention CG7203,I_chr2L_7795654_7795717,Herp chr2L - chr2L_7797733_7798162 chr2L_7797732_7797733;chr2L_7798162_7798163 chr2L_7797397_7797732;chr2L_7798163_7798614 2.14 0.00 0.00 5.41 0.00 0.00 1.79 1.82 1.67 9.76 5.26 4.11 0.00 0.00 0.00 5.26 6.45 0.00 0.00 2.14 0.00 4.00 3.88 0.00 0.00 0.00 2.41 3.19 6.06 3.39 3.45 11.90 4.35 5.71 5.41 0.00 0.65 0.00 0.00 6.67 4.17 4.29 0.00 6.35 4.41 5.26 1.12 7.41 0.00 0.00 2.82 5.56 0.00 3.03 0.00 5.26 1.54 0.00 K intron_retention CG3757 chrX + chrX_250951_253649 chrX_250950_250951;chrX_253649_253650 chrX_250541_250950;chrX_253650_255278 0.00 NA NA 0.00 NA NA 0.00 0.00 17.65 NA NA 0.00 NA NA NA 0.00 NA NA NA 5.56 NA 0.00 2.00 0.00 0.00 NA 0.00 1.92 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA K intron_retention Ndc80,tth chrX - chrX_13505729_13505790 chrX_13505728_13505729;chrX_13505790_13505791 chrX_13505344_13505728;chrX_13505791_13505850 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Rap2l,I_chr2R_19951753_19952256,RI_chr2R_19952181_19952256 chr2R + chr2R_19951097_19952256;chr2R_19952181_19952256 chr2R_19951753_19952256 chr2R_19952257_19952356;chr2R_19950576_19951096 1.82 0.00 1.92 1.32 2.38 0.00 1.35 2.08 1.79 3.57 0.00 1.25 4.35 1.96 1.92 1.75 2.17 4.76 1.85 2.70 0.00 2.56 1.35 1.47 0.00 1.82 2.33 2.63 2.70 2.27 1.52 2.38 4.76 1.16 2.44 0.00 2.50 2.04 1.61 1.27 1.82 0.94 0.00 1.49 1.96 1.22 1.85 4.92 1.04 0.00 1.92 2.38 2.27 0.00 1.56 0.00 0.00 1.49 K intron_retention atms chr3R + chr3R_602527_602585 chr3R_602526_602527;chr3R_602585_602586 chr3R_601560_602526;chr3R_602586_603425 0.00 0.00 0.00 1.52 0.00 0.00 0.00 1.45 1.18 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 2.47 0.00 2.68 0.90 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 1.64 0.00 1.06 0.00 0.00 0.00 0.00 0.00 2.44 1.80 0.65 0.00 1.30 0.00 0.00 0.00 0.65 0.00 2.20 0.89 0.45 0.00 K intron_retention dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21309092_21309945 chr2L_21309091_21309092;chr2L_21309945_21309946 chr2L_21308992_21309091;chr2L_21309946_21309974 100.00 100.00 92.31 100.00 100.00 100.00 94.44 95.45 100.00 100.00 100.00 100.00 100.00 100.00 93.33 96.15 100.00 100.00 100.00 97.22 100.00 100.00 92.86 100.00 100.00 90.91 94.74 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 95.24 NA 100.00 100.00 100.00 93.55 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 K intron_retention l(1)G0196,I_chrX_21900456_21903880,RI_chrX_21900456_21904036,I_chrX_21900456_21904601,noncoding_25159 chrX + chrX_21903358_21903507 chrX_21903357_21903358;chrX_21903507_21903508 chrX_21903021_21903357;chrX_21903508_21904005 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 87.50 NA 95.45 NA 92.31 100.00 100.00 88.89 100.00 100.00 97.92 100.00 94.44 100.00 100.00 100.00 NA 91.67 100.00 NA 100.00 90.00 100.00 97.22 100.00 100.00 NA 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 95.24 K intron_retention CG12734,I_chr3L_3183812_3183932,I_chr3L_3184645_3185360 chr3L + chr3L_3184038_3184251 chr3L_3184037_3184038;chr3L_3184251_3184252 chr3L_3183933_3184037;chr3L_3184252_3184644 20.41 16.67 NA 42.86 NA NA NA 26.67 24.00 NA NA 31.25 NA NA 6.67 NA NA NA NA 15.79 NA 22.22 20.00 20.83 NA NA 20.83 25.00 NA NA NA NA 21.43 NA NA NA 19.23 4.55 11.76 56.25 NA 17.39 NA 4.76 NA 14.29 NA 30.77 42.86 30.00 17.39 NA NA 14.29 NA 11.76 NA NA K intron_retention CG5382,CG5380 chr3R - chr3R_18190943_18190997 chr3R_18190942_18190943;chr3R_18190997_18190998 chr3R_18190741_18190942;chr3R_18190998_18191191 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 K alternative_acceptor CG30428,RI_chr2R_21141343_21141399 chr2R + chr2R_21141285_21141342 chr2R_21141285_21141327 chr2R_21141243_21141284;chr2R_21141343_21141407 4.71 NA NA 3.85 NA NA 0.00 0.00 6.67 NA NA 12.50 NA NA NA NA 6.67 NA NA 10.53 NA NA 3.03 0.00 NA NA 6.67 NA NA NA NA NA 11.76 0.00 NA NA 7.69 6.25 NA 5.56 NA 3.45 NA 0.00 NA NA NA 6.67 3.85 NA NA NA NA NA 0.00 NA NA NA N intron_retention Cip4,I_chr3L_4363128_4363769,I_chr3L_4363386_4363987 chr3L - chr3L_4327918_4338066 chr3L_4327917_4327918;chr3L_4338066_4338067 chr3L_4327773_4327917;chr3L_4338067_4338182 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG6891,RI_chrX_18670889_18674713,I_chrX_18673576_18674713,RI_chrX_18674227_18674713 chrX + chrX_18674227_18674713 chrX_18674226_18674227;chrX_18674713_18674714 chrX_18674127_18674226;chrX_18674714_18674813 100.00 NA NA 92.86 NA NA 100.00 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA 93.75 100.00 NA NA NA 88.89 94.44 NA NA NA NA NA NA 90.00 NA NA NA 100.00 NA NA 100.00 NA 100.00 NA NA NA NA 100.00 100.00 NA NA NA NA NA NA 100.00 NA K alternative_donor R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083458_8089184;chr2L_8083588_8089184;chr2L_8083637_8089184;chr2L_8083687_8089184 chr2L_8083522_8089184 chr2L_8089185_8089284;chr2L_8083444_8083457 41.67 45.45 45.83 46.88 25.00 27.78 48.89 53.33 48.08 50.00 28.57 35.56 65.00 41.67 40.00 54.69 38.89 47.37 60.00 44.74 27.27 45.83 35.29 12.50 36.36 47.37 26.67 12.50 36.36 41.67 48.15 61.54 37.14 56.10 38.46 35.00 28.57 33.33 33.33 39.29 59.09 42.42 47.83 46.67 41.67 52.63 42.86 50.00 51.22 28.57 35.71 14.29 28.57 40.00 44.44 20.00 20.00 51.52 K intron_retention I_chr3L_20306985_20307177,CG6680 chr3L + chr3L_20310521_20310578 chr3L_20310520_20310521;chr3L_20310578_20310579 chr3L_20310328_20310520;chr3L_20310579_20310888 98.15 93.75 NA 93.75 NA 100.00 100.00 100.00 96.15 NA NA 100.00 NA 91.67 94.12 93.75 94.12 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 94.12 NA 100.00 NA NA NA 90.00 95.45 100.00 100.00 100.00 88.89 NA 86.67 NA 96.30 100.00 93.75 NA 93.33 NA 100.00 100.00 100.00 94.44 88.89 100.00 NA 100.00 90.00 94.12 93.33 K intron_retention CtBP chr3R + chr3R_8837471_8840829 chr3R_8837470_8837471;chr3R_8840829_8840830 chr3R_8837339_8837470;chr3R_8840830_8840914 100.00 100.00 100.00 100.00 100.00 100.00 98.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.36 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 96.67 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 K intron_retention CG30372,coilin,RI_chr2R_4012976_4013037 chr2R - chr2R_4014515_4014569 chr2R_4014514_4014515;chr2R_4014569_4014570 chr2R_4014429_4014514;chr2R_4014570_4014694 0.00 NA 0.00 3.03 NA 0.00 0.00 8.89 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 2.70 NA 0.00 NA NA NA 0.00 NA 0.00 NA K jcn_only_AA Itp-r83A,I_chr3R_1356147_1356224 chr3R + chr3R_1356147_1356271 chr3R_1356147_1356224 chr3R_1356136_1356146;chr3R_1356272_1356324 2.27 0.00 0.00 3.45 3.33 0.00 11.43 0.00 3.12 10.00 NA 3.28 0.00 7.41 6.90 2.27 0.00 3.85 0.00 1.69 5.00 0.00 1.69 1.92 0.00 NA 0.00 7.41 12.50 2.17 4.35 NA 4.17 4.44 3.85 0.00 2.38 2.33 1.41 6.85 NA 1.47 6.06 0.00 NA NA 0.00 0.00 3.64 4.55 0.00 4.76 NA NA 0.00 NA NA 0.00 K intron_retention CG16908,Rpt3R chr3R - chr3R_5580061_5580118 chr3R_5580060_5580061;chr3R_5580118_5580119 chr3R_5579562_5580060;chr3R_5580119_5580344 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 6.67 NA NA NA NA 6.67 NA NA NA 4.76 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K cassette blow,RI_chr2R_3470434_3470776 chr2R - chr2R_3470434_3474436 chr2R_3470434_3472560;chr2R_3472863_3474436 chr2R_3472561_3472862 chr2R_3470334_3470433;chr2R_3474437_3474581 95.34 92.65 98.28 91.84 93.88 93.33 94.74 95.83 97.33 88.52 97.87 95.00 97.44 95.00 94.12 96.59 100.00 98.25 98.59 90.48 97.87 91.18 91.51 95.51 86.21 98.44 97.53 94.92 93.91 96.47 86.14 94.67 93.37 96.49 98.75 95.06 93.68 94.44 96.59 94.23 92.11 95.35 98.15 98.94 91.60 96.23 93.90 95.34 96.69 98.75 96.30 98.36 97.92 94.29 98.78 91.04 94.69 96.12 K intron_retention B52,F_chr3R_9488762_9491174,E_chr3R_9488770_9491174,RI_chr3R_9489655_9489713 chr3R + chr3R_9488774_9490124 chr3R_9488773_9488774;chr3R_9490124_9490125 chr3R_9488692_9488773;chr3R_9490125_9490274 100.00 100.00 94.74 NA 100.00 100.00 95.24 95.00 97.37 96.43 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 94.23 100.00 96.30 100.00 100.00 100.00 100.00 96.15 98.04 95.24 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 91.30 97.62 96.77 95.24 98.00 95.65 97.83 100.00 96.55 100.00 100.00 96.77 100.00 92.59 K intron_retention CG7816,R_chr3R_25691122_25691551,RI_chr3R_25691122_25692883,RI_chr3R_25691122_25694436 chr3R - chr3R_25691122_25692883 chr3R_25691121_25691122;chr3R_25692883_25692884 chr3R_25691022_25691121;chr3R_25692884_25692958 3.54 2.34 3.28 8.33 1.83 4.60 4.17 4.60 2.61 3.19 5.32 5.00 1.52 3.92 2.83 3.51 3.19 4.08 5.26 3.38 3.67 2.63 5.59 3.36 1.47 3.57 3.60 13.79 5.13 6.82 4.35 8.20 6.25 3.54 4.94 0.00 1.68 4.17 1.77 9.24 0.00 3.49 5.00 4.48 0.00 4.46 0.00 16.33 1.79 1.20 4.14 2.41 2.06 1.35 3.31 2.22 2.61 10.77 K alternative_donor CG3077 chr2L - chr2L_2765428_2765504 chr2L_2765428_2765495 chr2L_2765284_2765427;chr2L_2765505_2765675 93.33 90.91 94.44 100.00 100.00 92.86 100.00 95.65 96.15 92.86 100.00 92.31 NA 92.31 76.47 93.75 90.91 92.31 84.62 89.66 100.00 95.24 97.30 92.86 78.57 92.31 93.33 84.62 100.00 100.00 100.00 93.75 87.50 94.74 100.00 92.86 93.10 94.12 80.95 81.48 85.71 96.97 92.31 93.75 94.12 86.96 86.67 85.00 95.24 94.44 95.65 94.12 93.33 100.00 93.33 90.91 90.91 89.47 K alternative_donor CG11984,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4839215_4839655;chr3R_4839215_4839851;chr3R_4839215_4839728;chr3R_4839215_4839889;chr3R_4839215_4839799 chr3R_4839215_4839561 chr3R_4839038_4839214;chr3R_4839890_4839901 50.00 66.67 50.00 45.45 40.00 44.44 50.00 54.55 42.86 33.33 25.00 45.45 42.86 50.00 44.44 66.67 50.00 66.67 57.14 26.67 66.67 83.33 50.00 66.67 100.00 42.86 80.00 100.00 50.00 66.67 50.00 50.00 66.67 40.00 75.00 100.00 75.00 75.00 75.00 62.50 75.00 41.18 36.36 60.00 100.00 55.56 40.00 44.44 44.44 44.44 83.33 50.00 100.00 60.00 44.44 50.00 57.14 100.00 K mutually_exclusive CG11009,I_chr3L_12844823_12845526,I_chr3L_12845441_12845526 chr3L + chr3L_12844823_12845526,chr3L_12845629_12845715 chr3L_12844823_12845331,chr3L_12845378_12845715 chr3L_12845527_12845628 chr3L_12845332_12845377 chr3L_12844723_12844822;chr3L_12845716_12845816 77.78 66.67 71.43 96.15 57.14 NA 83.33 84.62 90.00 71.43 63.64 91.67 NA NA 80.00 100.00 NA 77.78 62.50 100.00 100.00 NA 83.33 63.64 71.43 NA 62.50 100.00 NA NA 91.67 88.89 77.78 62.50 NA 30.00 75.00 NA NA NA 75.00 84.62 NA 66.67 85.71 92.31 70.00 100.00 75.00 75.00 61.54 77.78 NA 71.43 63.64 77.78 42.86 81.82 K intron_retention CG8594 chr2R + chr2R_8462126_8462183 chr2R_8462125_8462126;chr2R_8462183_8462184 chr2R_8461739_8462125;chr2R_8462184_8462342 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 2.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor mRpL20,I_chr3L_13010705_13010775,RI_chr3L_13010729_13010775 chr3L - chr3L_13010729_13010775;chr3L_13010705_13010775 chr3L_13010713_13010775 chr3L_13010776_13010875;chr3L_13010629_13010704 96.30 100.00 92.59 88.89 100.00 95.83 100.00 92.31 96.88 100.00 87.50 95.65 100.00 100.00 96.15 86.36 100.00 90.32 100.00 96.88 100.00 NA 96.55 91.30 85.71 95.65 95.24 100.00 92.86 100.00 80.77 100.00 91.30 93.33 92.86 100.00 94.12 100.00 100.00 100.00 100.00 93.75 100.00 85.71 96.15 93.10 96.30 100.00 95.12 92.86 96.43 100.00 92.59 96.67 96.15 96.30 100.00 96.67 K intron_retention CG1814,Updo chr2R + chr2R_5468712_5468770 chr2R_5468711_5468712;chr2R_5468770_5468771 chr2R_5468571_5468711;chr2R_5468771_5468922 13.18 16.67 8.33 21.88 6.67 10.53 40.48 5.00 22.22 NA 29.41 27.78 5.88 10.53 7.14 10.81 10.53 11.54 7.41 12.20 13.04 18.18 10.87 15.38 38.10 42.11 15.38 10.53 20.51 3.57 11.54 13.33 18.52 9.09 16.67 16.13 14.29 10.53 14.29 17.39 44.44 12.50 20.00 11.11 11.11 13.33 14.29 6.90 13.95 9.52 19.05 21.05 12.50 14.29 5.00 13.51 9.09 7.32 K jcn_only_AD CG8184,I_chrX_15620707_15620769 chrX + chrX_15608415_15608749 chrX_15608427_15608749 chrX_15608750_15608989;chrX_15607958_15608414 47.97 46.97 50.70 45.79 52.94 55.56 51.69 45.37 48.50 53.19 60.00 50.86 54.93 51.06 56.14 49.06 56.72 48.39 50.59 37.11 60.78 64.06 42.73 48.98 38.98 38.10 46.25 41.38 37.93 37.50 47.54 NA 45.45 41.96 55.56 40.28 51.64 50.00 57.39 43.02 NA 56.31 45.90 33.82 NA NA NA 41.07 42.57 NA 33.72 44.19 NA NA 37.50 NA NA NA K jcn_only_AA I_chr3R_1303481_1304607,CG31550 chr3R + chr3R_1312607_1312781 chr3R_1312607_1312772 chr3R_1312598_1312606;chr3R_1312782_1312899 93.65 84.62 88.46 100.00 100.00 NA 93.75 94.87 87.50 NA NA 96.30 NA NA 90.48 93.55 NA 92.31 95.00 91.67 NA NA 94.29 93.10 NA NA 90.00 NA NA NA 95.45 NA 93.10 95.83 NA NA 93.33 NA 78.79 96.88 NA 89.74 NA 88.00 89.29 89.29 100.00 NA 96.43 96.55 94.59 NA NA NA 95.45 95.45 100.00 82.61 K intron_retention Dlic chrX + chrX_11048699_11049081 chrX_11048698_11048699;chrX_11049081_11049082 chrX_11048472_11048698;chrX_11049082_11049261 100.00 90.00 NA 100.00 NA NA 87.50 100.00 95.24 100.00 100.00 94.44 NA 87.50 NA 100.00 NA 100.00 NA 94.74 NA 100.00 92.86 100.00 90.00 NA 100.00 NA 100.00 NA 90.00 NA 100.00 100.00 NA NA 94.74 90.91 100.00 94.44 100.00 100.00 NA NA NA 90.00 NA 100.00 92.31 NA 100.00 NA NA NA 100.00 NA NA NA K intron_retention Syb chr2R - chr2R_6137333_6138383 chr2R_6137332_6137333;chr2R_6138383_6138384 chr2R_6137005_6137332;chr2R_6138384_6138649 0.38 0.41 0.00 2.51 0.00 0.00 0.38 0.46 0.53 0.31 2.11 0.59 0.00 0.87 0.69 0.71 0.00 0.31 0.63 0.50 1.88 0.98 0.85 0.17 0.00 0.00 0.62 1.22 0.45 0.46 0.22 0.20 0.12 0.48 0.29 0.26 0.00 1.02 0.29 0.15 0.00 0.64 0.68 0.00 0.13 0.25 0.00 0.41 0.38 0.00 0.65 0.67 0.00 0.39 0.49 0.18 0.38 0.17 K alternative_donor NaCP60E,I_chr2R_20805053_20805170 chr2R + chr2R_20805005_20805170;chr2R_20805101_20805170 chr2R_20805053_20805170 chr2R_20805171_20805270;chr2R_20804953_20805004 0.00 20.00 NA 0.00 NA NA NA 0.00 18.18 NA NA 9.09 NA NA NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA NA NA 14.29 0.00 25.00 0.00 0.00 0.00 25.00 NA 0.00 0.00 NA 0.00 NA NA 25.00 0.00 NA 0.00 0.00 NA 0.00 NA 14.29 NA NA NA NA 0.00 K intron_retention Pect,I_chr2L_13207997_13208109,E_chr2L_13208285_13210076 chr2L + chr2L_13208778_13209435 chr2L_13208777_13208778;chr2L_13209435_13209436 chr2L_13208665_13208777;chr2L_13209436_13209452 13.33 18.00 15.52 8.38 9.43 12.73 30.61 15.45 14.17 8.33 13.51 15.13 11.84 16.39 12.99 18.18 10.71 15.38 21.92 10.34 7.69 13.64 11.25 16.39 21.28 10.94 17.81 17.65 5.71 8.00 15.87 16.13 13.33 16.67 9.80 16.67 19.51 16.67 8.00 14.29 17.39 13.68 8.33 6.38 9.68 12.77 17.31 10.81 17.43 9.76 6.82 11.86 13.04 0.00 16.95 4.88 10.26 13.16 K intron_retention CG1440 chrX + chrX_8331328_8332952 chrX_8331327_8331328;chrX_8332952_8332953 chrX_8331282_8331327;chrX_8332953_8333070 30.77 NA NA NA NA 33.33 18.18 NA 25.00 NA NA 35.71 NA NA NA NA NA NA NA 18.75 NA NA NA NA NA NA NA NA NA NA 33.33 NA NA 30.77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA jet chr2L - chr2L_4948560_4948897 chr2L_4948772_4948897 chr2L_4948898_4949817;chr2L_4948202_4948559 13.39 16.67 NA NA NA NA NA NA 0.00 NA NA 18.18 NA NA NA NA NA 27.27 NA 14.29 NA NA 12.50 10.81 NA NA NA 9.52 NA NA NA 30.00 NA NA NA NA 8.57 8.00 8.82 22.22 NA 16.00 NA 14.29 7.14 17.39 7.69 NA 4.00 14.81 8.00 NA NA 19.35 NA 25.00 6.25 NA K intron_retention CG6995 chr3R + chr3R_20644572_20646818 chr3R_20644571_20644572;chr3R_20646818_20646819 chr3R_20644527_20644571;chr3R_20646819_20646968 61.11 NA NA NA NA NA 81.25 61.54 71.43 NA NA 53.33 NA NA NA NA NA NA NA NA NA NA 69.23 NA NA NA 50.00 NA NA NA 40.00 NA NA 60.00 NA NA NA NA 33.33 NA NA 61.11 NA NA NA 70.00 NA 54.55 78.57 54.55 87.50 NA NA NA NA NA NA NA K intron_retention CG32016,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_978340_978914 chr4_978339_978340;chr4_978914_978915 chr4_977623_978339;chr4_978915_978920 100.00 90.91 100.00 95.65 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 93.33 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 NA K intron_retention noncoding_7369,CG15615 chr2R - chr2R_12678706_12678875 chr2R_12678705_12678706;chr2R_12678875_12678876 chr2R_12678596_12678705;chr2R_12678876_12678958 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.66 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG17082,I_chr2R_632143_635290,R_chr2R_642176_644740,I_chr2R_644094_644145,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_631984_636726;chr2R_632083_636726;chr2R_631907_636726;chr2R_631971_636726 chr2R_632143_636726 chr2R_636727_636891;chr2R_631902_631906 56.25 NA NA 68.09 NA NA 55.26 65.71 46.34 NA NA 52.38 NA 40.91 NA 58.33 52.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 64.52 NA NA NA NA NA NA NA 56.25 NA NA NA NA NA NA 62.07 NA NA NA NA NA NA NA NA NA K intron_retention CG13384 chr2L + chr2L_8385098_8386216 chr2L_8385097_8385098;chr2L_8386216_8386217 chr2L_8385003_8385097;chr2L_8386217_8386384 20.06 19.29 15.48 20.05 19.83 19.00 20.79 19.67 20.87 28.63 21.64 17.78 25.80 18.53 19.23 24.89 18.92 18.09 20.81 14.94 22.11 23.40 19.97 22.68 15.02 17.09 16.74 37.84 22.16 19.78 18.50 26.70 40.29 15.46 20.06 20.62 23.40 17.08 20.94 21.15 27.32 20.00 15.43 23.77 21.43 24.50 15.76 36.24 18.92 30.83 13.92 20.72 17.97 16.00 16.87 25.82 20.60 27.52 K intron_retention Pkc98E chr3R + chr3R_24865087_24866817 chr3R_24865086_24865087;chr3R_24866817_24866818 chr3R_24864919_24865086;chr3R_24866818_24867147 5.56 14.29 4.17 2.38 NA 5.56 14.29 2.70 10.87 NA 0.00 13.79 5.56 14.81 0.00 0.00 NA 5.56 0.00 6.90 NA 9.52 5.56 NA 23.08 0.00 14.29 NA 23.53 7.41 4.00 NA 5.26 2.86 5.00 11.76 16.67 NA 0.00 5.41 NA 11.11 4.76 NA NA 0.00 NA 0.00 11.76 NA 0.00 NA NA NA 9.09 NA NA 0.00 K alternative_acceptor Gbeta13F,I_chrX_15754284_15755167,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15754356_15755184;chrX_15754356_15755172;chrX_15754356_15755268;chrX_15754356_15755409 chrX_15754356_15755256 chrX_15754256_15754355;chrX_15755410_15755509 22.73 33.33 25.00 26.67 37.50 NA 18.18 24.00 19.51 NA NA 35.82 23.91 25.00 16.67 18.87 22.73 25.00 22.58 20.00 NA 16.67 28.00 20.00 33.33 NA 20.00 NA 27.27 23.53 22.73 NA 19.35 36.73 18.75 NA 21.74 NA NA 21.43 21.43 29.17 21.21 21.74 14.29 32.00 NA 21.05 20.00 NA 42.11 18.75 NA 25.00 28.00 NA 20.00 37.50 K alternative_donor Patj,CG12022 chr3L + chr3L_1798924_1799009 chr3L_1798954_1799009 chr3L_1799010_1800699;chr3L_1798831_1798923 77.35 81.82 81.25 76.19 60.00 75.00 93.33 77.78 75.86 63.64 53.33 91.67 NA 88.89 77.78 90.91 75.00 75.00 64.29 83.33 90.00 90.48 68.18 78.57 76.92 60.00 86.67 94.12 90.91 77.78 68.75 73.33 82.61 70.00 81.82 71.43 73.53 76.92 63.16 75.86 60.00 75.00 66.67 80.95 76.92 62.50 80.00 65.00 94.12 90.00 92.86 77.78 92.86 75.00 77.78 91.67 75.00 84.21 K jcn_only_AA Smc5,I_chr3L_21566234_21566275 chr3L + chr3L_21566234_21566289 chr3L_21566234_21566275 chr3L_21566134_21566233;chr3L_21566290_21566375 1.72 6.94 0.00 0.00 4.00 2.08 1.79 1.08 3.39 4.35 2.13 0.00 4.00 0.00 3.51 1.28 0.00 1.56 0.00 0.81 7.69 2.78 2.06 0.00 0.00 2.17 1.18 2.50 0.00 5.26 1.43 2.63 3.70 0.00 3.92 0.00 0.00 1.54 2.02 1.35 0.00 1.92 0.00 5.08 0.00 1.49 2.70 4.55 1.90 2.78 1.82 0.00 1.72 2.15 1.69 1.35 0.87 1.82 K intron_retention Gfr chr3R - chr3R_4129511_4129570 chr3R_4129510_4129511;chr3R_4129570_4129571 chr3R_4128787_4129510;chr3R_4129571_4129848 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA 0.00 6.25 NA NA NA 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 K alternative_acceptor Hrb98DE,I_chr3R_24425722_24426084,I_chr3R_24425722_24428493,I_chr3R_24426291_24426781,RI_chr3R_24429041_24431183 chr3R + chr3R_24425722_24426439 chr3R_24425722_24426427 chr3R_24425622_24425721;chr3R_24426440_24426915 22.55 15.58 21.59 29.58 18.92 22.64 16.67 29.21 23.64 34.62 23.08 21.80 15.56 17.65 16.22 18.99 18.75 15.52 20.59 21.77 NA 24.53 25.30 26.87 37.70 32.14 23.81 18.42 21.21 30.51 22.12 17.33 22.73 23.00 25.86 27.14 13.95 19.57 23.91 23.02 28.30 23.21 26.92 25.00 21.21 20.83 25.37 16.53 26.28 22.73 23.91 17.14 22.45 32.84 20.69 16.90 21.31 13.85 K alternative_donor LIMK1,I_chrX_12488942_12489000 chrX - chrX_12484518_12486000;chrX_12484518_12485963 chrX_12484518_12486079 chrX_12483874_12484517;chrX_12486080_12486162 4.00 5.56 0.00 3.03 0.00 10.53 4.00 2.86 9.09 0.00 4.76 2.56 6.25 8.70 4.17 2.94 0.00 4.55 5.00 6.52 9.52 25.00 0.00 0.00 8.33 0.00 4.76 0.00 2.86 0.00 3.45 0.00 4.08 2.56 0.00 3.70 6.06 4.17 4.55 2.44 6.67 14.58 13.33 3.85 0.00 5.88 8.33 6.67 5.41 8.33 3.33 0.00 9.09 0.00 3.70 7.69 0.00 0.00 K jcn_only_AA Su(dx),RE_chr2L_2038009_2039919,CG31672 chr2L + chr2L_2042570_2042665 chr2L_2042570_2042652 chr2L_2041647_2042569;chr2L_2042666_2042851 100.00 100.00 100.00 100.00 100.00 100.00 99.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.29 100.00 99.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.85 100.00 99.78 100.00 100.00 100.00 100.00 100.00 99.44 99.75 100.00 100.00 99.18 100.00 99.66 99.63 100.00 99.57 99.63 100.00 98.64 100.00 100.00 100.00 100.00 100.00 100.00 99.58 K cassette mbl,I_chr2R_13163569_13203579 chr2R + chr2R_13249603_13261322 chr2R_13249603_13260581;chr2R_13260667_13261322 chr2R_13260582_13260666 chr2R_13249485_13249602;chr2R_13261323_13261529 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Sans,RI_chr2R_8825985_8826072,I_chr2R_8826501_8826591 chr2R + chr2R_8824602_8825904;chr2R_8824493_8825904 chr2R_8824595_8825904 chr2R_8825905_8825980;chr2R_8824445_8824492 39.05 NA NA NA NA NA NA NA 30.00 NA NA NA NA NA NA NA NA NA NA 38.10 NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 40.00 K jcn_only_AA cnn,I_chr2R_9330634_9331165,I_chr2R_9331192_9331257,I_chr2R_9333096_9336812,RI_chr2R_9334834_9336719,I_chr2R_9347031_9370659 chr2R - chr2R_9331848_9331932;chr2R_9330634_9331932 chr2R_9330664_9331932 chr2R_9331933_9332199 0.00 0.00 0.00 6.58 1.49 0.00 3.16 0.00 0.00 4.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 3.12 1.54 1.16 0.91 2.44 0.00 1.37 0.00 1.64 1.18 1.79 8.93 0.00 0.00 1.25 0.00 1.85 0.72 0.00 1.75 0.00 0.00 0.00 2.63 0.00 0.00 0.00 2.94 0.00 0.00 1.35 0.00 0.00 0.00 K jcn_only_AA CG4829,I_chrX_16717240_16717547 chrX + chrX_16717240_16717619;chrX_16717240_16717889 chrX_16717240_16717547 chrX_16717140_16717239;chrX_16717890_16718151 1.65 1.92 0.78 0.83 0.90 0.36 0.36 2.03 1.49 3.23 2.25 1.11 3.91 1.54 2.54 1.59 1.69 1.35 1.39 0.77 1.24 3.76 1.95 1.42 2.28 6.44 1.64 3.12 2.83 1.74 5.51 1.50 3.19 0.93 3.32 1.08 1.62 1.20 1.33 2.55 3.23 1.65 2.50 1.09 4.09 1.21 2.36 1.72 1.21 2.50 2.01 3.26 0.97 1.48 1.75 1.75 1.12 0.61 K mutually_exclusive CG8671,I_chr2L_21275807_21277205 chr2L + chr2L_21275807_21279883,chr2L_21280448_21281131 chr2L_21275807_21277229,chr2L_21278430_21281131 chr2L_21279884_21280447 chr2L_21277230_21278429 chr2L_21275724_21275806;chr2L_21281132_21281337 66.67 66.67 50.00 50.00 60.00 66.67 66.67 66.67 70.00 66.67 50.00 62.50 66.67 75.00 40.00 66.67 75.00 66.67 80.00 66.67 50.00 71.43 72.73 60.00 83.33 66.67 62.50 50.00 50.00 66.67 57.14 66.67 71.43 66.67 66.67 85.71 70.00 66.67 66.67 63.64 66.67 50.00 80.00 57.14 60.00 75.00 66.67 80.00 63.64 80.00 70.00 80.00 75.00 83.33 60.00 66.67 83.33 80.00 K jcn_only_AD scrib,I_chr3R_22362324_22363015,I_chr3R_22381374_22399575,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22362244_22363092;chr3R_22362120_22363092;chr3R_22362315_22363092;chr3R_22362254_22363092;chr3R_22362224_22363092;chr3R_22362142_22363092 chr3R_22362324_22363092 chr3R_22363093_22363115;chr3R_22362112_22362119 19.01 34.62 14.29 9.52 17.50 19.70 15.00 11.73 24.00 54.72 18.29 15.38 26.67 10.11 13.27 17.43 14.77 18.89 22.22 11.95 16.28 5.88 32.26 29.29 37.50 22.50 33.33 43.24 25.18 16.59 16.67 14.86 17.07 16.67 16.03 21.09 38.10 37.31 35.96 37.11 18.18 18.18 18.29 31.37 14.93 18.52 30.77 25.20 17.09 35.42 25.41 40.00 27.91 29.63 19.01 36.73 35.56 16.13 K jcn_only_AA Abi,RI_chr3R_9946195_9946332 chr3R - chr3R_9946505_9946568 chr3R_9946508_9946568 chr3R_9946569_9946637;chr3R_9946417_9946504 90.68 90.70 90.58 90.71 91.02 94.54 91.04 90.68 87.66 89.55 93.29 90.75 87.16 88.97 92.11 90.26 93.38 96.57 90.57 89.64 88.95 88.67 90.93 93.58 92.56 87.98 89.04 88.24 89.22 91.30 88.89 92.22 89.10 93.80 92.42 94.09 87.23 87.50 88.56 88.36 91.94 90.68 91.78 91.23 87.59 93.45 86.31 91.11 88.38 91.50 87.23 89.55 90.84 93.36 90.53 88.78 93.15 93.53 K intron_retention Tsc1 chr3R + chr3R_19959171_19959227 chr3R_19959170_19959171;chr3R_19959227_19959228 chr3R_19957979_19959170;chr3R_19959228_19959385 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CoRest chrX + chrX_19417963_19418022 chrX_19417962_19417963;chrX_19418022_19418023 chrX_19417748_19417962;chrX_19418023_19418196 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG2003 chr3R + chr3R_27812832_27814973;chr3R_27812907_27814973 chr3R_27812850_27814973 chr3R_27814974_27815051;chr3R_27812763_27812831 90.99 90.91 88.46 93.75 92.86 87.50 92.86 90.74 92.96 100.00 95.24 91.30 92.50 86.67 88.89 91.07 96.00 92.31 93.33 87.50 86.67 87.50 94.12 93.75 88.89 90.48 85.71 NA 90.91 94.44 95.00 94.74 81.58 90.57 90.91 87.50 90.91 100.00 100.00 92.31 81.48 90.91 87.50 94.12 94.44 91.67 88.89 88.89 91.67 87.50 90.91 90.91 100.00 85.71 90.00 100.00 92.31 97.83 K alternative_donor CG11486,RE_chr3L_3084894_3085203 chr3L + chr3L_3071308_3073080;chr3L_3071190_3073080 chr3L_3071298_3073080 chr3L_3073081_3073149;chr3L_3071183_3071189 3.33 NA 0.00 0.00 NA NA 8.33 13.33 NA NA NA 0.00 0.00 NA 9.09 6.90 NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA 9.09 NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 6.90 NA NA NA NA NA NA NA NA NA K intron_retention Mocs1,I_chr3L_11064230_11064309 chr3L + chr3L_11064086_11064150 chr3L_11064085_11064086;chr3L_11064150_11064151 chr3L_11063683_11064085;chr3L_11064151_11064229 0.00 NA NA 10.00 NA NA 0.00 NA 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA 4.35 2.63 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 K jcn_only_AA I_chr3R_25875159_25875219,CG34317,CG7950,noncoding_20085,F_chr3R_25908044_25945850 chr3R + chr3R_25882757_25882861 chr3R_25882757_25882837 chr3R_25882665_25882756;chr3R_25882862_25882884 21.38 10.81 26.74 23.66 16.67 19.23 21.35 21.90 21.84 11.63 33.33 27.72 22.58 20.00 17.58 23.68 22.00 26.39 24.44 17.26 24.00 19.15 17.54 19.30 19.57 16.00 25.93 28.57 19.18 15.25 19.01 19.28 21.98 18.52 29.09 21.88 26.47 22.50 9.80 21.38 22.31 21.54 25.00 16.39 22.52 18.79 24.49 23.46 19.70 19.51 19.75 29.41 20.73 20.00 21.93 19.30 14.71 21.38 K intron_retention Marf,I_chrX_6263726_6263783 chrX + chrX_6264023_6264091 chrX_6264022_6264023;chrX_6264091_6264092 chrX_6263826_6264022;chrX_6264092_6264943 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 1.27 0.00 0.00 0.00 0.66 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG17683,I_chr2R_18774_18869 chr2R + chr2R_19470_19541 chr2R_19485_19541 chr2R_19542_19695;chr2R_19065_19469 100.00 94.12 94.44 100.00 100.00 100.00 96.55 100.00 94.29 92.86 100.00 96.55 94.44 100.00 100.00 100.00 100.00 94.74 100.00 98.04 94.74 100.00 100.00 100.00 96.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 95.83 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor RhoGDI chr3L + chr3L_19921875_19923920 chr3L_19921875_19923914 chr3L_19921868_19921874;chr3L_19923921_19924114 100.00 90.91 100.00 100.00 NA 100.00 92.31 100.00 100.00 100.00 100.00 100.00 NA 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 NA 95.65 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA K intron_retention B52,F_chr3R_9488762_9491174,E_chr3R_9488770_9491174,RI_chr3R_9489655_9489713 chr3R + chr3R_9488774_9489176 chr3R_9488773_9488774;chr3R_9489176_9489177 chr3R_9488692_9488773;chr3R_9489177_9489572 53.85 56.25 50.00 NA 53.85 70.00 71.43 86.67 69.57 61.90 69.23 60.00 75.00 61.54 63.16 52.00 64.29 NA 63.16 64.29 61.54 32.00 63.64 52.00 61.90 63.64 55.00 33.33 22.22 33.33 25.00 47.06 29.17 65.38 50.00 35.48 42.42 45.45 56.52 47.37 43.75 67.86 38.46 33.33 19.05 51.61 60.00 31.25 72.97 43.75 41.38 46.15 66.67 46.67 57.89 40.00 66.67 28.57 K intron_retention Pmi,PGRP-LD chr3L + chr3L_5774823_5775096 chr3L_5774822_5774823;chr3L_5775096_5775097 chr3L_5774787_5774822;chr3L_5775097_5775408 7.14 0.00 6.06 9.68 3.85 3.45 11.76 13.33 7.95 6.25 NA 5.63 4.76 0.00 9.38 19.05 18.18 NA 9.52 11.86 0.00 21.74 7.27 3.45 8.33 0.00 12.90 5.56 9.68 22.22 9.76 10.00 4.17 3.12 15.38 7.14 6.98 4.17 7.14 7.14 7.14 5.49 0.00 7.14 0.00 2.08 4.65 NA 9.23 9.09 20.00 0.00 8.89 3.33 13.79 0.00 4.20 4.55 K intron_retention Arp87C chr3R + chr3R_8518430_8518491 chr3R_8518429_8518430;chr3R_8518491_8518492 chr3R_8518365_8518429;chr3R_8518492_8518666 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.74 1.75 1.43 0.00 0.00 1.45 0.00 2.70 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette spin,I_chr2R_12013288_12013847 chr2R + chr2R_12020141_12023531 chr2R_12020141_12020926;chr2R_12021189_12023531 chr2R_12020927_12021188 chr2R_12020064_12020140;chr2R_12023532_12023630 98.64 99.56 99.46 98.64 100.00 99.35 99.45 99.50 99.72 97.60 99.34 98.64 98.70 99.27 99.43 100.00 100.00 99.26 99.34 99.68 99.42 93.71 98.57 97.01 95.65 97.90 97.64 90.82 95.41 95.24 99.39 97.48 95.91 99.57 97.62 97.85 98.80 96.48 98.18 97.12 99.32 99.44 99.15 98.75 97.25 97.97 97.77 96.73 98.88 94.08 96.68 99.28 99.33 98.64 98.97 97.42 97.92 97.34 K intron_retention bon chr3R + chr3R_16435123_16435685 chr3R_16435122_16435123;chr3R_16435685_16435686 chr3R_16434948_16435122;chr3R_16435686_16436022 1.27 0.00 2.00 4.76 0.00 0.00 2.04 0.00 0.00 0.00 0.00 3.85 15.00 0.00 4.08 2.13 0.00 2.50 5.56 1.19 0.00 5.41 1.27 2.27 0.00 0.00 3.95 5.71 0.00 3.70 6.25 0.00 1.82 5.17 5.00 4.00 0.00 0.00 2.35 9.52 0.00 2.06 0.00 0.00 4.55 0.00 0.00 5.66 6.56 0.00 2.38 3.45 0.00 0.00 0.00 0.00 0.00 3.45 K intron_retention ca,CG7802 chr3R + chr3R_25634729_25635010 chr3R_25634728_25634729;chr3R_25635010_25635011 chr3R_25634191_25634728;chr3R_25635011_25635543 0.00 3.45 0.00 22.73 0.00 0.00 3.70 8.33 4.08 0.00 0.00 4.44 0.00 0.00 0.00 0.00 10.34 0.00 0.00 4.88 0.00 0.00 3.92 2.94 0.00 0.00 4.44 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 4.65 0.00 0.00 3.33 0.00 5.13 4.55 0.00 NA 0.00 NA 3.45 2.27 0.00 3.03 0.00 0.00 NA 0.00 NA NA NA K alternative_donor CG2310,I_chr3R_25318474_25319142 chr3R - chr3R_25318474_25319136;chr3R_25318474_25319163;chr3R_25318474_25319142;chr3R_25318474_25318925;chr3R_25318474_25319093;chr3R_25318474_25318971;chr3R_25318474_25319004 chr3R_25318474_25319167 chr3R_25318374_25318473;chr3R_25319168_25319224 78.33 74.32 72.94 73.96 84.34 76.55 65.00 83.91 81.23 78.74 66.07 75.75 80.65 77.05 78.33 74.82 79.23 83.10 77.08 74.18 69.50 85.31 79.87 80.99 76.00 74.03 76.44 76.19 69.06 80.95 72.58 75.69 57.89 80.88 79.64 78.20 84.29 74.30 82.01 81.12 50.00 82.10 80.15 82.01 76.61 75.32 82.94 55.66 80.34 80.91 78.93 79.43 79.08 78.99 77.97 79.66 85.88 70.21 K intron_retention CG10737 chr2R + chr2R_15062814_15063692 chr2R_15062813_15062814;chr2R_15063692_15063693 chr2R_15062592_15062813;chr2R_15063693_15063852 1.54 0.00 0.87 1.80 2.20 0.00 1.94 1.75 1.61 0.00 0.00 1.52 3.37 2.30 0.00 1.34 0.00 0.00 0.00 0.00 0.00 1.89 0.00 1.67 2.67 1.94 0.00 11.11 4.29 1.67 1.12 3.96 3.76 1.35 0.00 0.00 1.75 2.02 1.54 3.68 0.00 1.83 0.00 1.29 1.83 1.97 0.69 3.52 2.05 2.60 0.65 0.00 0.88 0.00 1.61 3.33 0.00 1.66 K alternative_last_exon fru chr3R - chr3R_14248905_14256553;chr3R_14243023_14256553 chr3R_14252889_14256553 chr3R_14245340_14248904;chr3R_14241177_14243022 chr3R_14251658_14252888 chr3R_14256554_14256686 12.50 12.50 18.07 14.60 20.90 17.14 16.67 12.90 14.81 8.93 17.46 17.16 13.59 14.47 17.28 13.01 13.70 16.48 14.13 13.40 14.75 18.85 11.29 8.51 12.00 16.00 11.24 17.46 8.43 8.60 11.59 6.00 8.26 13.48 9.72 10.75 13.10 9.09 13.08 10.07 6.12 13.29 14.71 8.89 4.92 5.00 5.80 10.45 13.04 5.66 9.09 8.00 6.90 4.76 15.48 3.77 4.08 4.12 K intron_retention Tal chr2R + chr2R_19828704_19828762 chr2R_19828703_19828704;chr2R_19828762_19828763 chr2R_19828580_19828703;chr2R_19828763_19829736 0.30 0.00 0.52 1.30 0.00 0.00 0.00 0.00 0.85 0.00 0.69 0.70 0.00 0.79 0.50 0.73 0.00 1.52 0.00 1.10 0.00 0.00 0.00 0.00 0.56 1.19 0.98 3.27 4.88 0.00 1.46 0.00 0.93 0.88 0.00 0.62 0.27 0.00 0.88 0.39 0.00 0.30 0.00 0.33 1.87 1.06 0.40 0.00 0.39 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.78 0.00 K intron_retention Indy chr3L - chr3L_18823835_18823939 chr3L_18823834_18823835;chr3L_18823939_18823940 chr3L_18823376_18823834;chr3L_18823940_18824128 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Dif,I_chr2L_17414333_17414528,I_chr2L_17418395_17418487 chr2L - chr2L_17420114_17428007 chr2L_17420114_17427655 chr2L_17420066_17420113;chr2L_17428008_17428172 97.14 100.00 NA 97.14 NA NA 100.00 98.00 96.36 NA NA 96.00 94.29 100.00 100.00 98.39 100.00 100.00 97.14 96.08 100.00 86.49 96.36 92.00 NA 95.45 97.14 90.00 NA 95.83 100.00 NA 81.82 97.73 NA 93.10 NA NA 93.75 100.00 NA 98.00 100.00 95.45 NA NA NA 95.00 100.00 100.00 94.12 100.00 92.00 NA 92.11 NA 100.00 96.15 K intron_retention CG16817 chr3R + chr3R_5504387_5504441 chr3R_5504386_5504387;chr3R_5504441_5504442 chr3R_5504284_5504386;chr3R_5504442_5504698 100.00 NA NA 91.67 NA NA 88.89 100.00 94.12 NA NA 100.00 NA NA 100.00 100.00 NA NA NA 93.75 NA NA 90.91 NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA 100.00 100.00 100.00 K intron_retention Cap-H2 chr3R + chr3R_6591282_6591749 chr3R_6591281_6591282;chr3R_6591749_6591750 chr3R_6591236_6591281;chr3R_6591750_6591850 93.33 100.00 85.71 100.00 NA 90.00 93.75 100.00 90.48 100.00 100.00 90.48 84.62 100.00 100.00 100.00 100.00 92.31 90.91 88.46 NA 84.62 95.00 76.92 100.00 100.00 76.47 70.00 NA 92.86 NA 92.31 100.00 95.83 88.89 100.00 100.00 100.00 92.86 95.24 100.00 94.12 87.50 94.44 72.73 93.33 85.71 93.33 75.00 90.91 86.67 88.89 100.00 NA 92.86 80.00 NA 93.75 K intron_retention CG5805 chr3R - chr3R_20611637_20611694 chr3R_20611636_20611637;chr3R_20611694_20611695 chr3R_20611509_20611636;chr3R_20611695_20612624 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor RpL29,I_chr2R_17184688_17191389 chr2R + chr2R_17181384_17181558;chr2R_17181295_17181558 chr2R_17181380_17181558 chr2R_17181559_17181664;chr2R_17181294_17181294 98.17 98.21 98.24 98.95 98.10 97.91 98.99 98.77 98.70 98.18 98.01 98.05 97.90 98.90 98.67 98.78 98.56 98.34 98.21 98.33 98.44 100.00 98.01 98.24 96.97 98.20 94.81 98.06 97.97 97.53 97.87 95.91 97.39 98.40 95.45 97.37 97.87 97.95 96.77 98.83 94.93 98.77 98.30 97.95 98.31 96.11 98.06 97.20 98.38 98.19 98.76 98.17 97.88 95.00 98.25 97.37 98.49 96.01 K cassette lig,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3963954_3965235 chr2R_3963954_3964764;chr2R_3964798_3965235 chr2R_3964765_3964797 chr2R_3963798_3963953;chr2R_3965236_3966123 15.65 14.90 22.70 9.76 18.84 13.73 9.04 17.44 15.19 19.51 14.93 13.75 41.18 17.27 14.74 17.86 15.97 24.81 20.61 18.39 15.65 14.49 18.31 19.44 17.96 5.42 13.87 21.98 13.16 15.05 17.78 16.08 15.03 16.44 15.18 15.79 21.08 15.04 17.66 15.64 19.82 15.81 19.19 16.29 12.56 15.16 15.46 13.13 13.82 13.09 14.63 18.75 12.61 14.77 17.20 16.73 13.15 10.75 K jcn_only_AD Mtch,RI_chr3L_184729_185366,I_chr3L_185367_185925 chr3L + chr3L_184670_184774 chr3L_184682_184774 chr3L_184775_185000;chr3L_184665_184669 54.77 NA 61.54 47.62 NA 38.10 54.17 40.62 70.45 NA 59.09 61.29 60.00 51.72 64.71 56.52 NA NA 43.48 47.62 NA NA NA NA NA 48.00 NA NA NA NA 54.55 47.83 NA 69.44 NA NA NA NA NA 48.84 NA 58.00 NA NA 59.38 55.00 NA 50.00 61.54 NA NA NA NA NA 67.65 NA NA 48.48 K cassette kst,I_chr3L_3365752_3365816,I_chr3L_3367008_3367514 chr3L + chr3L_3366311_3367514 chr3L_3366311_3366443;chr3L_3367008_3367514 chr3L_3366444_3367007 chr3L_3366200_3366310;chr3L_3367515_3367614 66.32 66.24 66.88 94.58 65.33 68.23 47.62 52.96 62.49 68.75 47.12 67.04 37.40 56.31 56.15 94.27 53.87 49.16 56.92 56.43 59.47 82.87 74.28 68.48 72.17 54.07 66.82 78.75 77.80 86.46 60.41 71.57 72.28 56.95 66.38 69.47 74.35 73.56 68.83 64.36 64.94 60.06 54.96 63.67 66.85 69.16 63.66 69.56 52.62 69.73 65.00 74.06 66.32 66.30 50.40 66.79 65.01 69.53 K alternative_acceptor CG32344,RI_chr3L_321550_321914,I_chr3L_326540_326703,RI_chr3L_326725_326866 chr3L - chr3L_321361_321914;chr3L_321550_321914 chr3L_321364_321914 chr3L_321915_322014;chr3L_321242_321360 85.71 100.00 83.33 61.11 80.00 81.25 66.67 94.44 90.00 NA 88.89 80.00 76.92 84.62 94.74 78.26 NA 88.89 85.71 89.47 100.00 75.00 72.73 86.67 NA 83.33 92.31 75.00 71.43 85.71 84.62 90.91 88.24 80.00 75.00 100.00 77.78 100.00 60.00 78.57 84.21 85.71 100.00 NA 83.33 93.33 91.67 87.50 85.71 88.89 87.50 87.50 78.57 90.00 93.33 88.89 81.48 80.00 K alternative_acceptor CG31033,RI_chr3R_25658089_25658914 chr3R - chr3R_25658095_25658914;chr3R_25658071_25658914 chr3R_25658089_25658914 chr3R_25658915_25659003;chr3R_25657989_25658070 0.00 0.00 2.94 5.26 0.00 0.00 0.00 1.49 0.00 0.00 0.00 2.38 0.00 0.00 0.00 4.17 3.03 2.63 0.00 2.47 5.56 0.00 3.64 0.00 0.00 0.00 0.00 0.00 2.56 2.17 0.00 0.00 4.69 1.47 0.00 0.00 0.00 0.00 1.64 1.33 1.96 2.00 0.00 0.00 0.00 0.00 5.41 1.22 0.00 0.00 1.52 0.00 0.00 0.00 0.00 2.50 4.08 0.93 K intron_retention Rab-RP3,I_chr3L_8290720_8290792 chr3L + chr3L_8290573_8290634 chr3L_8290572_8290573;chr3L_8290634_8290635 chr3L_8290312_8290572;chr3L_8290635_8290719 12.50 10.53 10.53 15.15 15.38 17.65 13.04 12.00 17.95 NA 6.67 18.18 19.05 12.50 16.67 0.00 5.88 13.04 13.33 18.75 6.67 16.67 8.33 15.00 25.00 10.00 7.41 NA 8.00 0.00 10.00 5.00 20.00 9.68 30.77 13.33 20.00 NA 12.50 20.00 5.56 19.05 5.26 7.14 4.76 0.00 20.00 4.00 13.33 6.25 4.76 NA NA NA 10.53 8.33 14.29 13.04 K intron_retention Nc73EF,F_chr3L_16952838_16955936,CE_chr3L_16952842_16955936,I_chr3L_16952985_16955434,I_chr3L_16953768_16954599 chr3L + chr3L_16952985_16953637 chr3L_16952984_16952985;chr3L_16953637_16953638 chr3L_16952885_16952984;chr3L_16953638_16953767 5.00 4.17 4.76 14.29 3.12 8.11 25.00 6.90 7.89 NA 23.53 NA NA 0.00 11.43 8.00 6.67 0.00 7.14 5.48 3.12 0.00 4.05 2.44 5.56 9.09 7.84 3.85 7.14 4.65 6.06 NA 0.00 4.65 0.00 16.67 0.00 11.36 5.56 4.17 NA 5.17 5.00 10.00 NA 0.00 0.00 NA 4.92 6.67 6.56 6.45 0.00 0.00 0.00 0.00 2.56 NA K cassette Dscam,FI_chr2R_3236481_3242386,I_chr2R_3237222_3249222,I_chr2R_3238411_3249222,I_chr2R_3238587_3249222,CEF_chr2R_3238803_3249222,I_chr2R_3239090_3249222,FI_chr2R_3239545_3249222,F_chr2R_3240528_3249222,FI_chr2R_3241198_3249222,FI_chr2R_3242511_3249222,FI_chr2R_3242716_3249222,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3236481_3249222 chr2R_3236481_3243190;chr2R_3243315_3249222 chr2R_3243191_3243314 chr2R_3236381_3236480;chr2R_3249223_3249322 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention stj chr2R + chr2R_9703154_9703707 chr2R_9703153_9703154;chr2R_9703707_9703708 chr2R_9703060_9703153;chr2R_9703708_9703818 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Gprk1,RI_chr2R_357455_358274 chr2R - chr2R_345603_345658 chr2R_345603_345654 chr2R_345558_345602;chr2R_345659_345760 19.70 NA NA 16.67 NA NA 22.73 16.13 23.81 NA NA NA NA NA NA 30.30 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.33 NA NA NA NA NA 15.00 NA 0.00 NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA 31.82 K intron_retention Cep135,RI_chr3L_15119748_15119826,RI_chr3L_15120510_15120565 chr3L + chr3L_15119748_15119820 chr3L_15119747_15119748;chr3L_15119820_15119821 chr3L_15119648_15119747;chr3L_15119821_15119869 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 6.06 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 K intron_retention CREF_chr3R_5589662_5589762,CG8481 chr3R + chr3R_5594561_5594644 chr3R_5594560_5594561;chr3R_5594644_5594645 chr3R_5594544_5594560;chr3R_5594645_5594706 29.02 NA 30.77 NA NA NA NA NA 40.00 NA 42.86 NA NA NA 46.15 25.00 NA NA NA 26.09 NA 6.67 NA NA NA NA NA NA NA 14.29 NA NA NA 35.71 NA NA NA NA NA 43.75 NA 21.43 NA NA 14.29 35.29 NA NA 26.32 NA 41.67 NA NA NA NA 27.27 NA NA K jcn_only_AD sqh,I_chrX_6118043_6119039,I_chrX_6118150_6118725,I_chrX_6118150_6118729,I_chrX_6118150_6118790,I_chrX_6118150_6118800 chrX - chrX_6118150_6118729;chrX_6118150_6118725;chrX_6118150_6119039;chrX_6118150_6118949 chrX_6118150_6119035 chrX_6118050_6118149;chrX_6119040_6119139 1.08 1.04 0.99 0.57 0.63 0.80 0.85 0.61 1.12 0.41 0.62 1.00 1.08 0.88 16.18 0.94 1.42 0.70 0.72 0.84 1.33 1.04 1.52 0.65 0.21 0.55 0.92 1.60 2.79 1.24 1.19 1.91 1.75 1.00 1.65 0.00 1.53 1.51 0.71 1.46 1.29 1.08 1.83 1.23 1.58 0.93 0.70 2.03 1.33 1.15 1.21 0.91 1.39 1.14 1.47 0.81 2.20 1.40 K cassette CLIP-190,I_chr2L_17385896_17394432,RI_chr2L_17386394_17394432,I_chr2L_17394493_17404060,I_chr2L_17401291_17404060,I_chr2L_17401582_17402303 chr2L + chr2L_17385896_17400395;chr2L_17389531_17400395;chr2L_17386394_17400395 chr2L_17386394_17394429,chr2L_17389531_17394429,chr2L_17385896_17394429;chr2L_17394493_17400395 chr2L_17394430_17394492 chr2L_17385796_17385895;chr2L_17400396_17400464 96.88 94.12 100.00 100.00 100.00 100.00 100.00 96.88 98.08 90.00 91.67 97.22 94.74 95.45 100.00 96.88 100.00 93.75 94.74 97.87 86.67 90.91 96.67 95.83 92.86 95.83 96.30 100.00 71.43 100.00 95.00 100.00 94.74 97.14 100.00 93.33 96.00 100.00 92.00 88.24 100.00 97.50 100.00 89.47 90.91 100.00 90.00 95.65 97.73 92.86 100.00 100.00 100.00 100.00 100.00 92.86 100.00 93.33 K intron_retention I_chr3R_1303481_1304607,CG31550 chr3R + chr3R_1314996_1315088 chr3R_1314995_1314996;chr3R_1315088_1315089 chr3R_1314866_1314995;chr3R_1315089_1315211 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 1.43 2.94 0.00 0.48 K intron_retention psq,RI_chr2R_6449696_6467831 chr2R + chr2R_6501632_6502052 chr2R_6501631_6501632;chr2R_6502052_6502053 chr2R_6501448_6501631;chr2R_6502053_6503753 50.00 63.64 54.55 46.67 45.45 NA 28.57 54.55 33.33 45.45 NA 54.17 NA NA 50.00 NA NA NA NA 45.16 NA 54.55 47.06 40.00 41.67 NA NA 55.56 66.67 50.00 NA NA 47.83 63.64 NA 46.15 51.85 50.00 57.14 50.00 NA 40.00 NA 63.64 46.15 77.78 NA 84.62 60.00 36.36 47.06 NA 66.67 NA NA NA NA 45.45 K intron_retention Fcp1 chr2R - chr2R_20456126_20456182 chr2R_20456125_20456126;chr2R_20456182_20456183 chr2R_20455510_20456125;chr2R_20456183_20456392 0.00 0.00 0.00 3.33 0.00 0.00 0.00 2.94 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.41 NA 0.00 0.00 0.00 0.00 4.26 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 K jcn_only_AD glo,I_chr3R_7644679_7644739,REI_chr3R_7644679_7644932,RI_chr3R_7644683_7644880,I_chr3R_7647556_7647628 chr3R - chr3R_7644683_7644880;chr3R_7644683_7644739;chr3R_7644683_7644908;chr3R_7644683_7644743 chr3R_7644683_7644932 chr3R_7644583_7644682;chr3R_7644933_7644980 80.44 84.16 78.57 70.00 63.64 80.26 63.50 74.48 81.71 92.31 55.10 83.53 80.28 77.91 75.73 82.41 75.00 NA 75.51 81.89 80.00 80.90 80.66 75.29 75.90 60.71 82.28 91.27 72.50 88.96 76.38 89.08 82.95 78.88 85.26 93.81 85.06 76.32 76.64 82.27 76.40 80.59 77.42 92.14 77.65 83.59 81.44 87.79 75.35 86.21 78.45 75.71 91.06 81.32 70.00 85.60 85.19 89.20 K intron_retention CG17233,I_chr3L_20232803_20232962,RI_chr3L_20232898_20232962 chr3L - chr3L_20231011_20232962 chr3L_20231010_20231011;chr3L_20232962_20232963 chr3L_20229534_20231010;chr3L_20232963_20233016 25.00 NA NA NA NA NA NA 25.00 35.71 NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA 5.88 NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA Gbeta13F,I_chrX_15754284_15755167,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15754284_15755172;chrX_15754284_15755148;chrX_15754284_15755021;chrX_15754284_15755184;chrX_15754284_15755409;chrX_15754284_15755256;chrX_15754284_15754777;chrX_15754284_15755416 chrX_15754284_15755268 chrX_15754256_15754283 1.85 0.85 1.53 2.76 0.00 1.77 2.01 0.82 1.78 4.48 1.28 0.40 1.61 4.67 1.69 1.86 0.92 2.15 1.29 1.03 1.16 5.33 3.55 1.80 3.06 5.00 0.79 0.00 1.49 3.00 2.25 1.75 4.88 1.54 2.63 6.48 0.00 4.35 2.17 2.04 5.41 1.85 3.91 1.81 2.56 2.61 2.00 0.91 1.00 3.57 0.00 1.36 5.26 2.38 1.29 0.00 2.54 6.17 K jcn_only_AA Pros54 chr3L + chr3L_21530239_21530339 chr3L_21530239_21530310 chr3L_21530106_21530238;chr3L_21530340_21530480 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 K intron_retention CG8485 chr2R - chr2R_10126057_10126134 chr2R_10126056_10126057;chr2R_10126134_10126135 chr2R_10125881_10126056;chr2R_10126135_10126353 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 8.70 0.00 0.00 4.55 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 2.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention l(2)k09913 chr2R + chr2R_18954831_18955154 chr2R_18954830_18954831;chr2R_18955154_18955155 chr2R_18954762_18954830;chr2R_18955155_18955296 14.29 13.16 13.16 28.57 5.71 5.71 19.35 13.56 17.19 11.11 14.29 17.46 12.00 18.52 18.60 18.92 6.25 3.33 9.52 13.95 15.38 25.00 28.57 6.90 36.84 13.16 16.67 12.50 37.04 30.00 14.89 31.82 30.77 14.29 6.90 30.56 7.41 10.53 6.25 14.71 25.00 8.00 12.90 16.22 16.28 20.00 10.53 27.66 14.10 13.64 10.00 29.41 19.05 13.33 13.95 15.00 7.14 25.45 K alternative_donor Pegarn chr3L + chr3L_12783483_12784534;chr3L_12783350_12784534 chr3L_12783425_12784534 chr3L_12784535_12784733;chr3L_12783320_12783349 33.33 NA NA NA NA NA 16.67 33.33 25.00 NA NA NA NA NA NA 54.55 NA NA NA 37.50 NA NA NA NA NA NA NA NA NA NA 33.33 16.67 10.00 NA NA NA NA NA NA NA 37.50 30.00 NA NA NA 33.33 NA 35.71 50.00 NA NA NA NA NA NA NA NA 33.33 K intron_retention l(2)k09913 chr2R + chr2R_18954831_18958129 chr2R_18954830_18954831;chr2R_18958129_18958130 chr2R_18954762_18954830;chr2R_18958130_18958411 37.50 NA NA 17.65 NA NA NA 22.22 56.25 NA 41.67 NA NA NA NA NA NA NA NA NA NA 46.15 NA NA NA NA NA NA NA 33.33 NA NA 50.00 NA NA 70.00 NA NA NA 31.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 K intron_retention Gcn2,Gprk2 chr3R + chr3R_27223962_27224026 chr3R_27223961_27223962;chr3R_27224026_27224027 chr3R_27223389_27223961;chr3R_27224027_27224203 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K cassette CG14425,Sxl,CG14425_Sxl,CEF_chrX_6984538_6992033 chrX - chrX_6982783_6992033 chrX_6982783_6985706;chrX_6986156_6992033 chrX_6985707_6986155 chrX_6982611_6982782;chrX_6992034_6992068 100.00 100.00 100.00 98.33 100.00 100.00 98.31 100.00 98.75 100.00 95.24 100.00 100.00 100.00 97.06 100.00 100.00 96.88 100.00 100.00 100.00 100.00 97.73 96.88 100.00 96.43 100.00 100.00 95.24 100.00 100.00 94.12 100.00 98.63 96.77 100.00 100.00 100.00 100.00 97.92 100.00 98.51 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention kay,E_chr3R_25616137_25617114 chr3R + chr3R_25616533_25617114 chr3R_25616532_25616533;chr3R_25617114_25617115 chr3R_25616464_25616532;chr3R_25617115_25617214 100.00 88.89 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 95.00 92.31 88.89 96.15 97.06 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 NA 100.00 100.00 92.31 NA 100.00 100.00 K alternative_donor CG3194,CG17266 chr2R - chr2R_2560392_2560453 chr2R_2560392_2560447 chr2R_2559013_2560391;chr2R_2560454_2560850 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 42.86 NA 45.45 NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA 35.71 NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA NA K alternative_donor CG5001,I_chr2L_1191535_1191648 chr2L + chr2L_1186350_1191402 chr2L_1186453_1191402 chr2L_1191403_1191534;chr2L_1186256_1186349 100.00 100.00 94.44 100.00 100.00 100.00 100.00 96.43 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 93.10 100.00 92.86 100.00 100.00 100.00 91.67 100.00 100.00 92.31 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 94.12 100.00 100.00 100.00 K intron_retention RI_chr4_683177_684480,Slip1,RI_chr4_684369_684451,RI_chr4_684967_689045,I_chr4_685717_686576,RI_chr4_685717_689045,RI_chr4_687548_689045 chr4 + chr4_684369_684480 chr4_684368_684369;chr4_684480_684481 chr4_684313_684368;chr4_684481_684551 0.00 0.00 0.00 2.56 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 1.82 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 14.29 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 4.76 NA NA 0.00 0.00 0.00 NA K alternative_donor CG15072,RI_chr2R_14576128_14579545,I_chr2R_14589693_14590032 chr2R + chr2R_14575874_14579545;chr2R_14576017_14579545;chr2R_14576049_14579545;chr2R_14576056_14579545;chr2R_14576154_14579545 chr2R_14576247_14579545 chr2R_14579546_14579571;chr2R_14575805_14575873 22.22 33.33 40.00 23.08 33.33 16.67 29.41 22.22 20.00 12.50 11.11 20.00 11.76 8.33 12.50 27.78 11.11 14.29 6.67 20.00 25.00 28.57 44.44 20.00 50.00 12.50 14.29 66.67 42.86 14.29 11.11 50.00 45.45 26.67 16.67 12.50 12.50 50.00 20.00 17.65 100.00 35.71 22.22 18.18 0.00 25.00 33.33 55.56 31.25 33.33 50.00 20.00 25.00 0.00 25.00 0.00 25.00 33.33 K intron_retention CG30421 chr2R + chr2R_20640434_20640488 chr2R_20640433_20640434;chr2R_20640488_20640489 chr2R_20640194_20640433;chr2R_20640489_20640758 0.00 0.00 0.00 2.99 0.00 2.70 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 1.75 0.00 0.00 4.41 4.95 0.00 0.00 0.00 0.00 0.00 0.00 3.28 2.33 0.00 0.00 0.00 0.00 1.92 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 2.01 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 1.16 K alternative_acceptor CG14425,Sxl,CG14425_Sxl,CEFI_chrX_6981717_6984166,CEF_chrX_6984538_6992033 chrX - chrX_6979988_6981646 chrX_6980012_6981646 chrX_6981647_6981689;chrX_6979652_6979987 40.00 23.53 28.57 20.00 NA 42.11 21.05 53.33 35.71 NA NA 42.31 20.00 33.33 52.63 42.86 NA 25.00 35.71 28.12 66.67 73.91 35.48 41.67 36.36 53.85 48.28 50.00 35.29 42.86 53.85 NA 42.11 35.71 35.00 40.00 NA 40.00 35.48 56.76 NA 47.06 46.15 52.63 36.36 21.74 42.11 40.00 35.48 43.75 33.33 28.57 30.77 46.15 30.00 25.93 54.55 55.56 K intron_retention Rm62 chr3R - chr3R_1830849_1833758 chr3R_1830848_1830849;chr3R_1833758_1833759 chr3R_1829739_1830848;chr3R_1833759_1834028 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.10 0.00 0.00 0.00 0.18 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17754 chrX + chrX_9145063_9146560 chrX_9145062_9145063;chrX_9146560_9146561 chrX_9144661_9145062;chrX_9146561_9147604 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 8.70 0.00 0.00 0.00 0.00 0.00 3.80 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 8.33 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 K intron_retention CG16971,I_chr3L_225856_225909,I_chr3L_225919_225983,RI_chr3L_225919_226004,I_chr3L_229245_230186 chr3L + chr3L_225919_225983 chr3L_225918_225919;chr3L_225983_225984 chr3L_225910_225918;chr3L_225984_226009 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.87 100.00 100.00 99.87 100.00 100.00 99.71 100.00 100.00 99.66 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.61 100.00 100.00 100.00 100.00 100.00 99.66 100.00 100.00 100.00 100.00 100.00 99.32 100.00 100.00 99.79 100.00 100.00 100.00 100.00 100.00 100.00 99.79 99.60 100.00 100.00 100.00 100.00 100.00 99.62 K jcn_only_AA Pkc98E chr3R + chr3R_24870160_24870221 chr3R_24870160_24870218 chr3R_24870089_24870159;chr3R_24870222_24871440 77.16 77.78 75.47 89.47 67.35 75.61 72.22 77.19 82.14 75.00 77.14 78.46 91.89 93.18 80.65 85.00 85.00 61.29 75.76 76.85 91.43 72.73 82.50 81.48 74.29 61.54 81.82 73.58 68.29 72.58 74.68 NA 87.76 76.47 84.62 77.50 81.13 73.58 79.71 77.78 NA 79.57 70.00 73.68 80.00 78.57 68.00 76.47 75.76 71.43 74.32 84.44 85.00 NA 62.26 83.33 NA NA K intron_retention Sodh-2 chr3R + chr3R_6703092_6703150 chr3R_6703091_6703092;chr3R_6703150_6703151 chr3R_6702622_6703091;chr3R_6703151_6703246 21.54 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA 55.56 35.71 NA NA NA NA 50.00 23.08 NA NA NA 0.00 NA NA NA 19.05 NA NA 18.75 NA NA NA 20.00 14.29 NA NA NA NA 46.15 45.45 NA NA 33.33 NA NA 18.18 NA K intron_retention grp,I_chr2L_16697644_16698961,R_chr2L_16698072_16698138 chr2L + chr2L_16691193_16691900 chr2L_16691192_16691193;chr2L_16691900_16691901 chr2L_16690902_16691192;chr2L_16691901_16692123 0.00 1.39 0.00 0.00 3.39 0.00 0.00 0.00 1.54 0.00 0.00 1.71 0.00 0.00 0.00 0.00 0.00 0.00 1.85 2.21 0.00 2.60 0.00 2.20 0.00 0.00 0.00 0.00 4.35 1.15 0.00 0.00 0.00 0.00 0.00 1.27 2.04 3.12 0.00 2.63 0.00 1.57 0.00 0.00 0.00 2.00 0.00 0.65 0.00 3.70 0.00 0.00 0.00 0.00 2.60 0.00 3.39 0.97 K alternative_donor bur,I_chr2L_21177679_21177901,I_chr2L_21177679_21178250,I_chr2L_21177960_21179329 chr2L - chr2L_21177679_21179329 chr2L_21177679_21177901 chr2L_21177579_21177678;chr2L_21179330_21179429 2.27 1.54 1.08 4.14 2.04 1.27 2.29 1.15 2.33 0.00 1.75 5.26 2.99 2.60 2.02 2.40 1.52 2.11 2.04 8.00 1.92 25.32 2.73 1.98 2.50 1.09 4.81 4.55 8.06 2.74 2.25 1.64 2.86 2.17 1.41 4.05 2.56 1.47 2.15 3.49 2.38 2.01 1.37 4.17 2.08 3.66 2.00 1.63 1.90 3.51 2.46 2.50 2.27 2.56 2.97 2.27 1.72 0.81 K intron_retention E_chr3R_6935653_7037028,Ugt86Da chr3R + chr3R_6983216_6983799 chr3R_6983215_6983216;chr3R_6983799_6983800 chr3R_6982738_6983215;chr3R_6983800_6984059 0.00 1.33 0.00 1.38 0.00 0.00 2.14 0.61 0.00 0.00 0.00 0.00 0.00 2.82 0.00 0.00 0.00 2.00 0.00 1.43 0.00 0.48 0.00 0.78 0.00 0.00 0.68 1.64 0.00 0.00 0.00 0.00 1.39 0.70 1.33 1.35 1.52 0.00 0.76 2.17 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.69 2.13 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.00 K intron_retention CG14712 chr3R + chr3R_7455443_7455505 chr3R_7455442_7455443;chr3R_7455505_7455506 chr3R_7455040_7455442;chr3R_7455506_7459426 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 4.00 4.35 0.00 0.00 7.69 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 5.08 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 K intron_retention CG3847 chrX + chrX_6241277_6241333 chrX_6241276_6241277;chrX_6241333_6241334 chrX_6241252_6241276;chrX_6241334_6241442 90.70 98.04 89.47 97.06 96.55 89.47 85.29 97.50 89.69 81.58 86.67 96.55 90.70 92.86 88.71 91.95 96.97 90.91 87.50 92.66 89.47 72.34 98.57 85.94 94.74 92.98 88.89 97.30 96.43 87.69 84.85 86.79 85.45 92.21 94.00 98.04 87.76 90.91 85.94 84.78 86.27 93.07 88.24 89.29 79.63 92.68 80.70 90.72 92.17 91.67 94.67 93.48 89.55 87.72 93.67 93.33 85.33 88.35 K intron_retention AP-1sigma,I_chr3R_19786283_19787772 chr3R + chr3R_19785316_19786619 chr3R_19785315_19785316;chr3R_19786619_19786620 chr3R_19785178_19785315;chr3R_19786620_19787186 62.50 55.56 62.00 75.28 60.61 64.71 80.00 62.50 62.50 36.84 38.89 52.81 76.00 73.53 50.88 60.61 69.23 62.22 70.91 72.04 35.85 58.06 66.67 53.85 71.43 64.71 72.34 76.47 72.73 70.37 55.10 47.83 44.00 58.62 70.97 78.79 70.59 51.52 59.46 59.65 58.62 67.09 62.50 52.38 57.14 47.62 65.00 61.54 70.89 70.97 66.04 63.64 55.00 67.57 69.57 55.56 56.41 48.15 K jcn_only_AA CG34408,I_chrX_10120689_10121004 chrX + chrX_10120689_10121435;chrX_10120689_10121381 chrX_10120689_10121444 chrX_10120589_10120688;chrX_10121445_10121990 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 1.85 0.00 0.00 2.04 4.65 NA NA 3.23 0.00 3.03 0.00 0.00 0.00 1.92 0.00 0.00 0.00 1.61 0.00 2.22 1.45 0.00 0.00 NA 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA bon chr3R + chr3R_16436233_16436297 chr3R_16436233_16436294 chr3R_16436109_16436232;chr3R_16436298_16437346 97.92 97.30 91.67 92.86 100.00 100.00 97.37 93.15 99.08 92.31 96.67 100.00 91.89 100.00 97.67 98.28 100.00 97.92 98.21 98.11 100.00 97.22 98.25 93.94 100.00 100.00 94.44 NA 100.00 94.87 97.44 NA 93.22 94.74 100.00 100.00 96.67 100.00 100.00 100.00 86.96 96.51 100.00 100.00 91.30 97.37 100.00 100.00 97.30 100.00 100.00 100.00 NA NA 96.23 92.31 95.45 97.87 K alternative_donor CG18811,I_chr3L_18664773_18665233 chr3L - chr3L_18664773_18665730 chr3L_18664773_18665233 chr3L_18664673_18664772;chr3L_18665731_18666269 0.00 0.00 0.87 0.50 0.00 0.00 0.58 0.00 0.39 1.05 0.00 0.00 0.00 0.89 0.65 0.70 0.00 0.00 0.87 0.00 0.00 0.61 0.51 0.00 0.00 2.04 0.64 0.61 1.06 0.00 0.80 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.79 0.95 0.91 0.00 1.14 0.00 0.91 0.57 1.09 0.00 1.23 0.00 0.00 0.69 0.00 1.08 0.00 K intron_retention chic,I_chr2L_5976783_5978547,RI_chr2L_5976783_5980950,I_chr2L_5978244_5979411,I_chr2L_5979527_5979599,I_chr2L_5979705_5979818,I_chr2L_5979705_5979941,RI_chr2L_5979705_5979951,I_chr2L_5979705_5979953,I_chr2L_5979705_5980025,I_chr2L_5979705_5980213,I_chr2L_5979705_5980370,I_chr2L_5979705_5980558,I_chr2L_5979705_5980632,I_chr2L_5979705_5980639,RI_chr2L_5979705_5980734 chr2L - chr2L_5976783_5979411 chr2L_5976782_5976783;chr2L_5979411_5979412 chr2L_5976683_5976782;chr2L_5979412_5979511 0.04 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.06 0.00 0.00 0.00 0.10 0.00 0.16 0.05 0.15 0.00 0.19 0.03 0.00 0.00 0.05 0.22 0.30 0.48 0.00 0.00 0.00 0.22 0.07 0.06 0.21 0.03 0.04 0.07 0.00 0.06 0.07 0.00 0.00 0.08 0.08 0.00 0.05 0.05 0.04 0.00 0.00 0.00 0.00 0.08 0.12 0.06 0.08 K jcn_only_AA fdl,RI_chr2R_8394261_8394315 chr2R - chr2R_8378211_8394315 chr2R_8394261_8394315 chr2R_8394316_8394415;chr2R_8378028_8378210 0.85 1.92 1.54 0.78 0.00 0.00 0.00 0.00 0.36 2.30 1.75 2.06 0.00 0.00 0.00 0.84 1.09 4.17 0.00 0.45 2.00 0.00 1.61 0.86 2.60 0.85 0.00 0.00 2.41 0.00 1.35 0.00 1.85 0.60 0.00 0.00 1.60 0.00 1.15 1.42 2.78 0.45 1.22 0.00 3.75 2.75 5.06 2.40 1.66 0.00 0.78 0.00 0.00 3.64 0.87 7.95 3.75 0.00 K alternative_acceptor CE_chrX_20766225_20927825,CG1529,RI_chrX_20902550_20902613 chrX - chrX_20902550_20902613 chrX_20902561_20902613 chrX_20902614_20902713;chrX_20902450_20902549 16.33 4.76 8.33 24.00 26.09 12.00 17.24 21.43 16.28 13.04 4.76 17.65 25.00 18.75 10.53 11.11 12.50 19.35 10.53 10.71 4.00 18.87 20.00 12.50 19.05 12.50 9.68 17.65 21.43 15.79 56.67 21.05 13.46 27.27 13.04 16.67 15.52 15.15 17.65 16.33 11.54 14.71 33.33 14.29 8.82 33.33 18.75 21.43 16.28 26.47 18.52 10.53 12.00 19.05 16.67 20.00 9.09 18.18 K jcn_only_AD alpha-Cat,I_chr3L_23319053_23319787,I_chr3L_23319057_23319748,I_chr3L_23319861_23321813,I_chr3L_23327841_23328002 chr3L - chr3L_23319057_23319787 chr3L_23319057_23319748 chr3L_23318989_23319056;chr3L_23319788_23319848 0.53 0.00 0.00 0.53 0.00 2.74 1.63 0.00 0.84 0.00 0.00 0.53 0.00 1.11 0.00 0.94 1.90 0.00 0.00 0.94 3.33 2.33 0.00 0.00 3.03 2.44 2.27 0.00 8.33 0.00 0.68 5.08 0.00 0.96 0.00 2.86 0.00 0.00 0.00 0.00 5.48 0.60 0.00 1.56 2.13 1.00 1.59 0.00 1.04 0.00 0.00 1.02 0.00 1.12 0.70 0.00 0.65 0.00 K intron_retention CG11562 chr2L + chr2L_292661_292716 chr2L_292660_292661;chr2L_292716_292717 chr2L_292325_292660;chr2L_292717_293260 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 NA 2.35 0.00 0.00 0.00 0.00 3.33 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.35 0.00 0.00 0.00 0.00 0.00 K intron_retention KLHL18 chr3R - chr3R_7835866_7835963 chr3R_7835865_7835866;chr3R_7835963_7835964 chr3R_7835012_7835865;chr3R_7835964_7836152 4.04 3.45 0.00 8.00 0.00 3.23 4.35 10.00 4.17 NA 0.00 4.44 0.00 0.00 5.41 10.00 0.00 4.55 0.00 4.48 0.00 0.00 5.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 7.69 4.00 4.65 4.08 6.25 3.70 7.14 0.00 2.22 4.76 6.67 8.16 7.41 6.45 12.50 5.88 0.00 8.33 8.47 5.88 0.00 9.52 4.35 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Orc2 chr3R + chr3R_9790656_9790713 chr3R_9790656_9790704 chr3R_9790643_9790655;chr3R_9790714_9791303 100.00 NA NA 100.00 NA NA NA 100.00 93.33 NA NA 100.00 NA NA NA 100.00 100.00 NA NA 83.33 NA NA 88.89 NA NA NA NA NA NA NA NA NA NA 85.71 NA NA 90.00 NA NA NA NA 93.33 NA NA 100.00 NA 100.00 NA 100.00 NA NA NA NA NA 90.00 NA NA NA K intron_retention CG30122,I_chr2R_14526123_14526189 chr2R - chr2R_14520633_14520696 chr2R_14520632_14520633;chr2R_14520696_14520697 chr2R_14520559_14520632;chr2R_14520697_14520868 0.00 0.00 0.00 1.58 1.60 0.00 0.00 2.86 0.00 2.11 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 1.65 0.79 0.00 0.00 2.43 3.91 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.70 0.48 0.31 0.00 0.00 0.69 0.00 0.00 0.36 0.00 K intron_retention pcs,F_chr2R_10877121_10877189 chr2R + chr2R_10868885_10868994 chr2R_10868884_10868885;chr2R_10868994_10868995 chr2R_10868782_10868884;chr2R_10868995_10869328 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor E(bx),I_chr3L_246324_246699 chr3L - chr3L_241499_241563 chr3L_241502_241563 chr3L_241564_245475;chr3L_241118_241498 96.25 95.00 93.33 92.45 100.00 92.00 98.25 95.38 94.37 100.00 95.65 93.75 97.06 96.43 88.24 96.49 100.00 97.14 90.70 96.25 95.24 96.15 93.75 95.45 100.00 95.45 96.43 100.00 100.00 95.00 90.62 100.00 96.77 96.15 90.00 87.50 100.00 100.00 95.24 97.44 100.00 98.15 96.77 100.00 93.33 95.00 100.00 90.24 96.72 100.00 96.43 95.24 100.00 100.00 92.68 92.31 100.00 95.24 K jcn_only_AD ball chr3R - chr3R_22691957_22692048 chr3R_22691957_22692012 chr3R_22690327_22691956;chr3R_22692049_22692377 100.00 100.00 100.00 100.00 100.00 99.06 100.00 99.42 100.00 100.00 100.00 100.00 99.16 100.00 100.00 100.00 100.00 99.21 99.18 100.00 100.00 100.00 99.25 100.00 100.00 100.00 100.00 99.37 100.00 100.00 99.24 100.00 100.00 99.46 99.29 100.00 97.37 100.00 99.56 100.00 100.00 100.00 100.00 98.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG15445,REI_chrX_20988432_20988485,RI_chrX_20988432_20988489,REI_chrX_20988439_20988489,I_chrX_20988439_20988552 chrX + chrX_20988432_20988485 chrX_20988439_20988485 chrX_20988486_20988585;chrX_20988339_20988431 55.28 NA 41.67 60.87 50.00 38.46 33.33 65.00 37.93 NA 62.50 46.15 46.15 43.75 53.33 66.67 75.00 61.54 53.33 59.26 41.67 35.00 66.67 66.67 NA 66.67 60.00 50.00 73.08 61.54 63.16 52.63 66.67 59.09 46.15 77.78 54.55 NA 35.71 44.00 66.67 70.59 41.67 72.73 61.11 61.29 40.91 68.18 52.17 47.83 60.00 NA 50.00 55.56 55.00 40.00 56.25 48.15 K intron_retention puc,CG7878,I_chr3R_3952846_3953762 chr3R + chr3R_3934101_3936798 chr3R_3934100_3934101;chr3R_3936798_3936799 chr3R_3933962_3934100;chr3R_3936799_3937023 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.34 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RhoGEF3,I_chr3L_298140_298220 chr3L + chr3L_301109_301162 chr3L_301108_301109;chr3L_301162_301163 chr3L_300901_301108;chr3L_301163_301681 100.00 100.00 98.51 100.00 98.04 100.00 98.72 100.00 99.32 97.37 100.00 99.10 100.00 100.00 98.36 100.00 100.00 100.00 100.00 99.45 98.00 98.39 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 98.15 100.00 98.89 100.00 98.92 99.01 100.00 99.31 100.00 98.00 100.00 98.48 100.00 98.86 100.00 98.61 95.29 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA capu,I_chr2L_3884519_3902594,I_chr2L_3887800_3888648,I_chr2L_3887896_3888648 chr2L - chr2L_3887800_3893261;chr2L_3889785_3893261 chr2L_3887557_3893261 chr2L_3893262_3893604 95.59 92.65 94.29 97.78 98.25 100.00 91.01 95.33 95.40 97.50 97.18 95.61 96.23 95.59 94.25 95.95 100.00 98.86 95.59 96.49 98.36 90.65 92.78 94.25 85.48 86.79 93.67 91.11 92.06 95.80 97.18 96.36 95.00 98.06 89.83 72.55 100.00 98.00 95.10 96.60 90.70 95.87 100.00 92.00 89.02 97.14 95.59 93.43 95.92 100.00 96.40 100.00 93.85 89.19 95.92 96.77 94.29 95.27 K jcn_only_AA mnb chrX - chrX_17762200_17763014;chrX_17762203_17763014 chrX_17762403_17763014 chrX_17763015_17763849;chrX_17762180_17762199 90.00 NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA 85.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention MED6,CG9471,CG12946,I_chr3R_5599701_5600032,I_chr3R_5609682_5609889 chr3R - chr3R_5593601_5594085 chr3R_5593600_5593601;chr3R_5594085_5594086 chr3R_5593583_5593600;chr3R_5594086_5594178 85.71 NA 90.00 78.95 NA NA 66.67 85.00 78.57 NA NA 83.33 87.50 NA 100.00 NA 76.92 75.00 93.75 73.33 77.78 79.17 NA NA NA 100.00 NA 46.67 80.00 85.71 85.71 91.67 89.47 93.75 NA NA 66.67 NA NA 90.00 71.43 94.74 88.89 63.64 92.86 93.75 NA 95.24 91.30 NA NA NA NA NA 91.67 NA NA 75.00 K intron_retention Nhe3,I_chr2L_6680525_6680670 chr2L - chr2L_6680284_6680345 chr2L_6680283_6680284;chr2L_6680345_6680346 chr2L_6680175_6680283;chr2L_6680346_6680524 0.00 6.67 0.00 2.27 0.00 0.00 1.92 0.00 0.00 2.27 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 2.63 0.00 0.00 0.00 0.00 5.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 2.27 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 K alternative_acceptor RpL8,I_chr3L_2587513_2587750,I_chr3L_2587600_2587750,I_chr3L_2589746_2592161 chr3L + chr3L_2587514_2587717;chr3L_2587514_2587750 chr3L_2587514_2587575 chr3L_2587500_2587513;chr3L_2587751_2587850 0.13 0.12 0.09 0.07 0.03 0.00 0.16 0.12 0.08 0.08 0.03 0.06 0.20 0.10 0.02 0.07 0.06 0.06 0.08 0.07 0.07 0.36 0.19 0.16 0.09 0.11 0.15 0.15 0.22 0.15 0.25 0.13 0.23 0.15 0.29 0.30 0.13 0.13 0.08 0.09 0.30 0.11 0.15 0.22 0.14 0.24 0.20 0.15 0.19 0.19 0.44 0.15 0.16 0.62 0.09 0.11 0.13 0.20 K alternative_donor Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8107426_8107747 chr2L_8107439_8107747 chr2L_8107748_8107847;chr2L_8107326_8107425 100.00 100.00 100.00 100.00 99.56 99.60 99.77 100.00 99.85 99.53 100.00 99.23 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.82 99.55 100.00 100.00 100.00 100.00 100.00 99.53 99.70 100.00 99.51 99.56 100.00 100.00 99.77 100.00 100.00 100.00 100.00 99.78 100.00 100.00 99.82 100.00 100.00 100.00 99.58 100.00 100.00 99.80 99.63 99.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA NtR chr2R + chr2R_18016131_18016219 chr2R_18016131_18016198 chr2R_18015978_18016130;chr2R_18016220_18016386 99.59 100.00 100.00 98.75 96.36 98.31 98.31 98.18 97.41 97.14 100.00 95.45 100.00 100.00 98.61 100.00 97.87 100.00 98.18 100.00 96.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 96.55 97.78 100.00 98.67 98.96 100.00 100.00 100.00 NA 100.00 97.96 94.87 98.36 100.00 100.00 100.00 98.04 100.00 100.00 99.17 100.00 100.00 95.45 96.83 100.00 96.55 97.44 96.81 97.65 K jcn_only_AD CG1600,I_chr2R_3415482_3418090 chr2R - chr2R_3415482_3416695 chr2R_3415482_3416532 chr2R_3415382_3415481;chr2R_3416696_3416766 98.87 95.83 98.26 98.76 100.00 97.00 100.00 98.34 99.62 100.00 100.00 98.04 98.55 97.87 100.00 100.00 100.00 96.90 98.10 99.07 100.00 94.21 99.31 98.98 100.00 98.63 97.06 100.00 98.46 98.68 97.48 100.00 98.95 100.00 98.94 100.00 97.90 100.00 99.25 100.00 95.95 98.87 97.80 98.61 98.63 100.00 97.99 98.45 98.99 98.48 100.00 98.75 98.23 100.00 100.00 98.98 98.74 98.77 K intron_retention tan,R_chr3L_6048520_6048578,R_chr3L_6048608_6048676 chr3L + chr3L_6048764_6048816 chr3L_6048763_6048764;chr3L_6048816_6048817 chr3L_6048696_6048763;chr3L_6048817_6048925 0.00 0.00 0.00 0.00 11.11 NA 0.00 0.00 2.70 NA 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 7.69 8.82 0.00 0.00 0.00 3.45 5.88 NA NA 0.00 NA NA 3.23 NA NA 0.00 0.00 0.00 0.00 NA 6.82 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 N jcn_only_AA CG31431 chr3R + chr3R_17697863_17697938;chr3R_17697863_17698131 chr3R_17697863_17697989 chr3R_17697704_17697862;chr3R_17698132_17698247 0.00 0.00 0.00 0.00 0.00 0.00 21.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6674 chr3L - chr3L_9964703_9964763 chr3L_9964702_9964703;chr3L_9964763_9964764 chr3L_9964213_9964702;chr3L_9964764_9965180 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA 5.00 NA 5.56 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 K intron_retention I_chr2R_5999081_6000140,E_chr2R_6001157_6001630,CG11866 chr2R + chr2R_6006048_6006983 chr2R_6006047_6006048;chr2R_6006983_6006984 chr2R_6005537_6006047;chr2R_6006984_6007232 0.00 0.00 0.00 1.54 0.00 0.00 3.57 0.00 4.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Tor chr2L + chr2L_13005998_13006352 chr2L_13005998_13006349 chr2L_13005431_13005997;chr2L_13006353_13006363 19.38 NA 16.67 45.45 NA NA 15.38 18.75 20.00 NA NA 13.33 NA NA 7.14 7.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA 30.77 NA 23.08 NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA NA NA K alternative_acceptor Ipk1 chr2R + chr2R_16766404_16766475 chr2R_16766404_16766472 chr2R_16766183_16766403;chr2R_16766476_16766616 53.94 NA 36.36 NA NA NA NA 50.00 NA NA NA 60.00 NA NA 54.55 45.45 NA NA NA 66.67 NA NA NA 46.15 NA NA 58.33 NA 63.64 NA 57.14 NA NA 33.33 NA 53.33 55.56 NA 38.46 45.00 47.06 60.00 NA NA 58.33 62.50 66.67 60.00 NA 50.00 55.56 NA 55.56 50.00 NA 46.15 47.06 53.33 K jcn_only_AD CG7048,I_chr3R_18313003_18313231,R_chr3R_18313119_18313234,I_chr3R_18313402_18313502 chr3R + chr3R_18313003_18313231 chr3R_18313115_18313231 chr3R_18313232_18313331;chr3R_18312937_18313002 99.26 99.53 98.86 98.18 100.00 100.00 98.40 99.56 97.61 97.47 97.40 100.00 100.00 98.72 99.33 98.87 98.99 100.00 98.08 99.29 97.70 80.19 98.71 100.00 99.25 100.00 100.00 99.18 99.26 99.25 98.00 97.93 98.85 99.49 99.41 100.00 98.67 99.47 99.18 97.53 100.00 99.03 100.00 100.00 98.32 100.00 99.64 97.76 99.61 99.24 99.62 99.26 100.00 100.00 98.76 100.00 99.26 99.59 K jcn_only_AA CG4699 chr3R + chr3R_11624133_11624445 chr3R_11624133_11624442 chr3R_11623809_11624132;chr3R_11624446_11624758 77.78 NA NA NA 75.00 NA NA NA 77.78 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.48 NA 85.71 NA NA NA 76.74 NA NA NA 80.77 NA NA NA NA NA NA NA NA NA NA 75.76 NA 80.00 NA NA NA NA NA NA NA 66.67 K alternative_donor Pka-C1,I_chr2L_9685203_9685594 chr2L - chr2L_9685203_9696190 chr2L_9685203_9685594 chr2L_9685103_9685202;chr2L_9696191_9698233 0.69 1.92 1.23 1.61 0.00 1.20 1.75 1.50 0.69 0.00 1.82 1.44 1.43 1.12 1.19 0.58 1.45 0.00 0.91 0.32 0.00 1.64 1.37 2.27 0.00 1.33 1.59 6.25 0.00 0.00 0.66 0.00 0.00 1.11 0.00 2.13 0.00 0.00 0.00 0.94 0.00 0.61 1.59 1.72 0.00 0.00 0.00 1.28 1.18 0.00 1.54 0.00 0.00 0.00 0.91 0.00 0.00 0.00 K intron_retention CG10080 chr2R + chr2R_17518321_17518377 chr2R_17518320_17518321;chr2R_17518377_17518378 chr2R_17518123_17518320;chr2R_17518378_17518801 2.00 2.25 0.88 2.48 2.13 0.00 2.56 2.34 2.45 0.00 0.00 3.12 2.63 5.26 0.00 2.80 0.00 0.00 3.17 2.25 0.00 0.00 2.22 0.00 3.03 3.30 4.39 6.84 1.55 1.91 1.05 2.89 2.61 0.00 3.33 2.08 3.30 0.00 0.83 1.73 2.63 1.04 0.00 0.78 2.20 2.17 0.00 0.95 1.68 1.54 2.00 2.63 1.85 2.27 1.80 0.93 2.67 0.92 K intron_retention drosha chr2R + chr2R_3821543_3821600 chr2R_3821542_3821543;chr2R_3821600_3821601 chr2R_3819931_3821542;chr2R_3821601_3823925 0.00 NA NA 0.00 NA NA 6.67 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA tay,I_chrX_15779977_15780538,RI_chrX_15780874_15781045,I_chrX_15783766_15785978 chrX - chrX_15777398_15777465 chrX_15777401_15777465 chrX_15777466_15777513;chrX_15777227_15777397 83.74 NA 74.19 90.62 NA 80.95 78.57 87.50 86.67 NA 85.00 73.58 86.36 87.50 82.05 82.86 NA NA NA 82.50 NA 77.14 87.50 81.82 75.00 95.83 NA NA NA 80.00 84.62 NA 82.61 86.36 NA NA 76.19 NA NA 95.24 NA 93.33 NA NA NA NA NA NA 80.56 NA 95.83 NA NA NA 91.43 NA NA NA K jcn_only_AA CG1516,cbx,I_chr2R_5752557_5752628,RI_chr2R_5752988_5757801 chr2R - chr2R_5752557_5752628 chr2R_5752575_5752628 chr2R_5752629_5752728;chr2R_5752457_5752556 100.00 NA NA 95.56 NA 95.45 97.22 97.06 100.00 NA NA 96.43 NA NA 100.00 100.00 NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA 97.30 NA NA NA 96.15 NA NA 100.00 95.45 100.00 NA NA NA 100.00 NA 95.83 95.83 K alternative_acceptor Socs16D chrX - chrX_17717337_17717410 chrX_17717352_17717410 chrX_17717411_17719514;chrX_17717224_17717336 2.44 2.00 3.45 2.70 3.12 4.55 0.00 2.44 1.35 2.50 3.85 3.57 3.12 0.00 0.00 5.13 4.00 0.00 3.23 1.43 0.00 3.70 4.17 1.75 2.70 0.00 1.85 4.76 3.28 3.70 4.08 0.00 0.00 2.00 0.00 2.70 0.00 1.59 1.41 1.15 0.00 1.39 3.85 3.92 0.00 3.28 0.00 2.33 3.85 0.00 1.64 3.03 4.35 3.23 0.00 0.00 3.45 3.33 K jcn_only_AA Nhe2,I_chr2L_21122390_21122912 chr2L + chr2L_21124374_21124442 chr2L_21124374_21124439 chr2L_21124317_21124373;chr2L_21124443_21124521 72.97 73.85 67.61 69.85 78.12 72.73 69.81 71.32 71.43 76.00 88.24 71.56 78.46 70.59 70.37 71.57 77.61 82.43 72.29 77.07 79.03 81.18 67.06 69.01 79.69 76.25 72.22 83.67 78.26 73.53 72.73 77.78 70.00 75.00 73.81 75.29 72.00 72.88 71.57 78.30 73.33 70.34 66.67 77.22 70.00 80.00 83.33 72.97 72.48 80.49 81.40 58.70 72.73 78.05 78.12 72.34 68.89 65.52 K alternative_acceptor scramb1,I_chr3L_10217325_10217959 chr3L - chr3L_10217325_10217959 chr3L_10217338_10217959 chr3L_10217960_10218059;chr3L_10217225_10217324 100.00 100.00 100.00 100.00 97.22 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 97.37 100.00 96.30 95.45 100.00 97.06 94.59 95.35 95.83 98.04 97.78 100.00 96.15 100.00 96.43 93.62 97.78 100.00 100.00 94.44 100.00 100.00 96.43 96.15 100.00 100.00 96.15 95.65 100.00 100.00 100.00 100.00 95.24 97.78 100.00 K jcn_only_AD CG12734,I_chr3L_3183812_3183932,I_chr3L_3184645_3185360 chr3L + chr3L_3183998_3184251 chr3L_3184038_3184251 chr3L_3184252_3184644;chr3L_3183933_3183997 96.30 90.32 NA NA NA NA NA NA 96.30 NA NA NA NA NA NA NA NA NA NA 95.65 NA 86.96 93.33 100.00 NA NA 92.86 NA NA NA NA NA NA NA NA NA 87.88 96.67 97.67 NA NA 96.30 NA 100.00 NA NA NA NA NA 95.24 96.30 NA NA NA NA 100.00 NA NA K intron_retention Su(var)3-9,I_chr3R_11088444_11088789,I_chr3R_11088444_11088825 chr3R - chr3R_11088444_11089003 chr3R_11088443_11088444;chr3R_11089003_11089004 chr3R_11088344_11088443;chr3R_11089004_11089196 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.50 0.00 0.00 0.74 0.00 0.00 0.49 0.00 0.45 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 1.35 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14225,I_chrX_19569702_19569879,I_chrX_19573364_19573474 chrX - chrX_19569689_19569836 chrX_19569688_19569689;chrX_19569836_19569837 chrX_19569602_19569688;chrX_19569837_19569924 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA N alternative_last_exon Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2611234_2611315;chr3L_2608645_2611315 chr3L_2611160_2611315 chr3L_2608438_2608644 chr3L_2609737_2611159 chr3L_2611316_2611367 99.70 98.76 98.67 94.93 96.43 98.50 97.94 97.01 98.34 99.57 99.83 95.97 99.86 98.38 98.57 99.85 99.82 99.79 99.81 98.37 99.83 99.19 99.07 99.88 99.80 99.86 97.43 99.46 99.71 99.82 99.70 99.71 98.93 98.78 99.69 97.99 99.92 97.98 99.91 98.07 99.65 98.52 99.82 99.81 99.77 99.85 99.78 99.84 98.90 96.54 97.65 99.73 99.88 99.80 99.89 99.81 99.85 99.83 K intron_retention CG5525,E_chr2L_12690983_12691912,CG5780 chr2L - chr2L_12691304_12691362 chr2L_12691303_12691304;chr2L_12691362_12691363 chr2L_12690619_12691303;chr2L_12691363_12691502 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.47 0.10 0.00 0.29 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.58 0.00 0.00 0.00 0.46 0.56 0.91 0.00 0.00 0.21 0.00 0.00 0.17 0.00 0.70 0.00 0.00 0.00 0.45 0.00 0.24 0.00 0.00 0.00 0.52 0.00 0.00 0.37 0.23 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 K cassette Hsc70-4,EI_chr3R_11068693_11068772 chr3R + chr3R_11068522_11070081 chr3R_11068522_11068631;chr3R_11068693_11070081 chr3R_11068632_11068692 chr3R_11068453_11068521;chr3R_11070082_11072336 0.09 0.11 0.09 0.02 0.16 0.05 0.16 0.08 0.08 0.19 0.07 0.11 0.18 0.10 0.04 0.09 0.07 0.06 0.09 0.08 0.07 0.02 0.07 0.11 0.14 0.05 0.09 0.22 0.30 0.10 0.07 0.22 0.05 0.06 0.03 0.00 0.11 0.12 0.05 0.20 0.24 0.11 0.06 0.09 0.16 0.16 0.07 0.16 0.06 0.05 0.06 0.11 0.06 0.04 0.09 0.11 0.05 0.08 K alternative_donor CG31531,I_chr3R_485548_485960,I_chr3R_485608_485960,noncoding_14584,I_chr3R_486122_506500,I_chr3R_496573_505950,I_chr3R_523978_526879 chr3R + chr3R_485616_485960;chr3R_485399_485960 chr3R_485608_485960 chr3R_485961_486060;chr3R_485382_485398 42.86 42.86 42.86 26.67 27.78 40.00 50.00 32.35 37.50 56.25 54.55 51.16 38.89 42.86 60.87 34.38 47.62 NA 38.46 44.12 NA 42.86 53.12 39.13 42.86 44.44 62.07 26.32 42.11 40.00 44.44 22.22 28.57 39.29 35.00 26.32 60.00 57.14 62.96 60.61 25.00 27.03 41.18 62.07 NA 23.08 45.45 46.43 33.33 43.75 29.41 45.00 NA NA 44.44 NA 50.00 25.00 N alternative_acceptor CG11897 chr3R + chr3R_24989884_24989968 chr3R_24989884_24989946 chr3R_24989616_24989883;chr3R_24989969_24990652 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Rm62,RI_chr3R_1834029_1834277 chr3R - chr3R_1834032_1834272 chr3R_1834031_1834032;chr3R_1834272_1834273 chr3R_1833759_1834031;chr3R_1834273_1834276 90.91 93.33 NA 89.47 100.00 100.00 97.83 84.21 95.00 78.57 100.00 100.00 NA NA 90.00 90.00 NA 70.00 100.00 94.74 100.00 NA 100.00 92.86 100.00 97.06 94.74 62.86 97.06 91.67 90.00 NA 51.85 76.92 88.89 90.48 100.00 100.00 100.00 32.79 91.30 89.47 90.91 51.61 87.50 90.91 88.89 55.56 77.78 NA 100.00 87.50 84.62 100.00 90.91 88.89 90.00 72.73 K intron_retention CG15740 chrX - chrX_11739906_11740078 chrX_11739905_11739906;chrX_11740078_11740079 chrX_11739288_11739905;chrX_11740079_11740119 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG42271,RI_chrX_14127297_14127804 chrX - chrX_14124662_14124724 chrX_14124661_14124662;chrX_14124724_14124725 chrX_14123332_14124661;chrX_14124725_14125274 0.00 0.00 0.00 30.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 3.85 NA 2.86 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K jcn_only_AD CG14777,CG14778 chrX + chrX_1360963_1361835 chrX_1360967_1361835 chrX_1361836_1361997;chrX_1360741_1360962 1.42 3.85 5.13 0.00 0.00 2.27 3.57 6.12 1.18 0.00 NA 3.95 0.00 4.35 4.55 NA 0.00 3.85 0.00 1.45 0.00 NA 2.99 1.11 4.08 0.00 0.00 3.70 0.00 5.77 0.00 0.00 0.00 1.39 5.00 0.00 3.53 2.74 2.65 0.00 3.45 0.96 6.25 7.41 1.35 3.03 2.78 0.00 1.79 0.00 2.60 0.00 0.00 1.15 0.00 2.82 1.52 0.00 K jcn_only_AD Aats-pro chr3L - chr3L_2651281_2651341 chr3L_2651281_2651333 chr3L_2651213_2651280;chr3L_2651342_2651593 12.50 0.00 4.00 0.00 3.45 4.55 17.24 2.70 6.56 NA NA 6.00 NA 16.67 5.13 NA 12.50 NA NA 8.70 NA 0.00 22.45 17.78 8.33 NA 15.22 0.00 37.50 30.00 56.00 4.76 10.00 16.67 13.64 3.33 27.50 11.11 17.50 16.95 30.43 14.29 NA 0.00 11.76 12.50 20.00 15.56 7.84 18.18 16.00 15.00 12.12 NA 10.00 13.79 1.85 20.69 K jcn_only_AA Dgp-1,I_chr2R_14058825_14059758,I_chr2R_14058951_14059942,I_chr2R_14058954_14059942 chr2R - chr2R_14058954_14059942;chr2R_14058951_14059942 chr2R_14058825_14059942 chr2R_14059943_14060042 98.63 100.00 97.50 100.00 95.65 96.67 100.00 100.00 100.00 NA 95.45 98.48 96.15 100.00 94.59 96.61 100.00 96.88 100.00 97.62 96.30 93.94 96.67 96.00 95.24 96.77 95.00 100.00 98.63 100.00 100.00 100.00 96.77 100.00 100.00 93.75 100.00 100.00 100.00 100.00 93.88 100.00 96.67 100.00 100.00 100.00 96.77 97.67 100.00 96.43 100.00 NA 100.00 100.00 100.00 96.77 98.04 98.61 K intron_retention CG8671,I_chr2L_21275807_21277205 chr2L + chr2L_21281338_21281395 chr2L_21281337_21281338;chr2L_21281395_21281396 chr2L_21281132_21281337;chr2L_21281396_21281884 0.00 0.00 0.00 11.76 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA mip120,I_chr2R_9394299_9394351,RI_chr2R_9394299_9395019 chr2R + chr2R_9394299_9395019;chr2R_9394299_9397293 chr2R_9394299_9394351 chr2R_9394199_9394298 4.17 0.00 6.67 8.00 NA 4.55 NA 3.33 0.00 NA NA 10.00 NA 0.00 0.00 8.33 NA 4.17 0.00 7.69 0.00 NA 2.38 13.51 4.35 NA NA NA NA NA 0.00 NA 3.85 0.00 NA 8.70 0.00 8.00 2.08 12.24 NA 8.57 NA 0.00 14.29 4.55 NA 3.33 0.00 5.00 7.89 NA NA NA 4.17 0.00 NA NA K intron_retention Pi3K92E,I_chr3R_16459436_16459551,I_chr3R_16459436_16459848 chr3R - chr3R_16459436_16460267 chr3R_16459435_16459436;chr3R_16460267_16460268 chr3R_16459336_16459435;chr3R_16460268_16460435 0.00 0.00 0.00 5.41 NA 0.00 0.00 4.88 2.00 0.00 NA 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 3.12 0.00 6.25 0.00 10.00 13.33 0.00 6.67 NA 0.00 2.94 0.00 NA 3.33 4.76 0.00 3.39 NA 2.22 9.52 2.22 NA 0.00 NA 0.00 3.77 NA 6.25 0.00 NA NA 0.00 NA 0.00 14.29 K intron_retention CG9904 chrX + chrX_2513962_2514026 chrX_2513961_2513962;chrX_2514026_2514027 chrX_2513833_2513961;chrX_2514027_2514626 100.00 100.00 NA 100.00 NA NA NA 93.33 94.44 NA NA 100.00 NA NA 88.89 90.91 NA NA NA 100.00 NA NA 90.00 100.00 NA NA 100.00 NA NA NA 92.31 NA 100.00 100.00 NA NA NA 100.00 91.67 88.89 NA 100.00 NA NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA 100.00 NA NA NA K jcn_only_AA CG4230,I_chr2L_5096701_5097032,RI_chr2L_5097236_5097536 chr2L + chr2L_5096701_5097035 chr2L_5096701_5097032 chr2L_5096601_5096700;chr2L_5097036_5097132 4.00 NA 0.00 NA NA NA NA 4.00 0.00 NA NA 3.57 NA NA NA NA NA NA NA 3.12 NA NA 4.76 5.00 NA NA NA NA NA NA 3.57 NA NA NA NA NA 5.00 NA NA 0.00 NA 4.00 NA NA NA NA NA NA 4.35 NA 9.09 NA NA NA 4.35 NA 0.00 NA K alternative_donor alpha-Man-I,I_chrX_10218352_10219759,I_chrX_10218390_10219759 chrX - chrX_10218352_10219846;chrX_10218352_10219918;chrX_10218352_10219759;chrX_10218352_10219665;chrX_10218352_10219823;chrX_10218352_10219708 chrX_10218352_10219816 chrX_10218290_10218351;chrX_10219919_10219979 16.67 14.29 16.67 23.08 16.67 11.11 20.00 29.41 10.53 0.00 20.00 20.00 NA 22.22 25.00 14.29 16.67 16.67 12.50 21.43 16.67 0.00 12.50 14.29 14.29 14.29 12.50 NA NA 22.22 14.29 NA 14.29 50.00 NA 16.67 16.67 0.00 NA 25.00 16.67 15.38 12.50 16.67 NA 20.00 NA 22.22 20.00 33.33 20.00 12.50 20.00 NA 11.11 0.00 0.00 33.33 K intron_retention RhoGDI,noncoding_13630 chr3L + chr3L_19924478_19925081 chr3L_19924477_19924478;chr3L_19925081_19925082 chr3L_19924363_19924477;chr3L_19925082_19925432 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.32 0.44 0.00 0.00 0.18 0.00 0.31 0.28 0.00 0.00 0.00 0.26 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.77 0.00 0.00 0.57 0.00 0.00 0.38 0.00 0.00 0.27 0.00 0.32 0.48 0.00 0.16 0.00 0.00 0.00 0.00 0.41 0.00 0.16 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Mlc-c,C_chrX_5514320_5515557 chrX - chrX_5514320_5516284 chrX_5514319_5514320;chrX_5516284_5516285 chrX_5514220_5514319;chrX_5516285_5516312 3.17 3.17 1.45 4.07 4.92 5.88 4.73 2.89 4.35 6.25 7.81 3.57 2.86 3.92 3.68 0.67 2.99 5.22 1.83 2.46 8.18 6.25 5.38 3.25 4.62 3.60 4.65 14.00 4.08 0.00 1.55 8.93 1.89 4.00 2.80 1.03 2.60 0.00 0.00 2.17 9.09 2.75 3.85 3.39 2.47 1.38 3.60 4.88 2.53 2.41 2.48 2.30 1.80 0.79 3.33 1.89 3.10 0.00 K intron_retention CG17184 chr3R - chr3R_7059293_7059643 chr3R_7059292_7059293;chr3R_7059643_7059644 chr3R_7059124_7059292;chr3R_7059644_7060166 2.13 2.75 2.13 3.81 3.57 0.00 4.55 6.06 3.88 0.00 2.60 3.42 0.00 3.39 4.44 2.30 2.90 1.28 4.00 1.50 2.27 5.26 0.00 1.85 0.00 3.28 0.00 0.00 3.45 1.69 10.42 3.39 0.00 4.88 0.00 0.00 2.26 1.02 0.00 5.95 0.00 3.25 5.17 0.00 0.00 1.05 0.00 0.00 4.67 0.00 1.64 3.64 1.77 0.00 4.60 0.99 1.40 4.48 K alternative_donor AIF chr2L + chr2L_2152466_2152662;chr2L_2152271_2152662 chr2L_2152463_2152662 chr2L_2152663_2152944;chr2L_2152233_2152270 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 2.38 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG9302,I_chr2L_13377616_13377699 chr2L - chr2L_13376976_13377038 chr2L_13376991_13377038 chr2L_13377039_13377615;chr2L_13376485_13376975 0.43 0.00 0.81 0.27 0.55 0.93 1.17 0.57 0.42 0.64 1.05 0.43 0.00 0.42 0.62 0.32 0.63 0.00 1.16 0.84 0.00 0.50 0.40 0.66 1.52 0.75 0.39 0.00 0.36 1.23 0.37 0.50 1.68 0.54 0.00 0.00 0.00 0.00 0.68 0.00 1.89 0.44 0.00 0.35 0.00 0.26 0.00 0.00 0.76 0.31 0.73 0.55 0.00 0.48 0.38 0.35 0.99 0.72 K intron_retention l(3)82Fd,I_chr3R_1122358_1125191,I_chr3R_1131693_1133665,I_chr3R_1147660_1148709 chr3R - chr3R_1122358_1123923 chr3R_1122357_1122358;chr3R_1123923_1123924 chr3R_1122258_1122357;chr3R_1123924_1124211 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 NA 10.20 0.00 0.00 0.00 4.55 0.00 NA 9.09 3.57 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 4.44 0.00 1.85 0.00 0.00 0.00 2.94 0.00 0.00 1.47 0.00 2.27 NA 0.00 0.00 0.00 0.00 NA 0.00 K intron_retention CG17665 chr2R - chr2R_130205_130265 chr2R_130204_130205;chr2R_130265_130266 chr2R_129941_130204;chr2R_130266_130352 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 6.82 NA 0.00 3.64 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 5.88 NA NA NA 0.00 NA 3.85 3.85 NA NA NA 0.00 0.00 1.59 NA 0.00 NA NA NA 0.00 NA 0.00 0.00 K jcn_only_AA l(2)gd1,Gr32a chr2L + chr2L_11109508_11110158 chr2L_11109508_11110104 chr2L_11109356_11109507;chr2L_11110159_11110249 8.33 8.06 12.96 11.50 16.22 8.51 12.64 10.89 9.43 18.52 14.00 6.12 2.27 13.79 11.54 18.60 9.43 8.33 13.11 2.70 15.38 2.94 5.83 6.85 5.56 28.30 2.94 0.00 11.90 7.78 18.18 11.11 3.85 6.38 11.32 25.53 10.64 11.32 4.65 7.69 13.24 7.32 4.65 8.33 5.56 8.60 5.63 4.08 8.33 7.29 8.99 2.78 6.45 8.06 5.56 10.00 2.80 3.06 K intron_retention msk,I_chr3L_8109906_8110404 chr3L + chr3L_8112643_8112704 chr3L_8112642_8112643;chr3L_8112704_8112705 chr3L_8111845_8112642;chr3L_8112705_8112928 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG1667,RI_chr2R_5731409_5731653,I_chr2R_5732410_5732504 chr2R + chr2R_5731907_5731965 chr2R_5731914_5731965 chr2R_5731966_5732034;chr2R_5731846_5731906 98.56 96.55 98.70 98.57 100.00 99.13 100.00 98.84 99.15 97.92 96.84 98.95 100.00 100.00 100.00 98.70 100.00 99.01 98.28 98.56 98.85 94.85 96.84 98.96 100.00 98.97 98.20 100.00 93.94 98.00 91.72 100.00 97.14 99.37 96.61 95.24 100.00 93.44 98.23 100.00 100.00 97.97 100.00 99.11 96.83 97.78 96.51 97.62 99.45 95.12 98.37 100.00 97.87 97.10 98.29 97.92 96.94 97.78 K intron_retention CG7458 chr3L + chr3L_21948354_21948413 chr3L_21948353_21948354;chr3L_21948413_21948414 chr3L_21948244_21948353;chr3L_21948414_21948649 100.00 NA NA NA NA NA NA 100.00 100.00 100.00 NA 92.86 NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA NA NA NA NA 100.00 NA 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 100.00 96.15 K alternative_donor Aats-ala chr2L - chr2L_8381453_8381679 chr2L_8381453_8381510 chr2L_8380448_8381452;chr2L_8381680_8381706 2.38 3.61 1.89 3.15 2.80 1.20 6.80 2.29 2.38 2.00 1.87 3.68 2.31 2.88 1.46 1.74 5.05 4.05 1.01 1.78 1.63 3.05 7.27 7.69 3.26 2.76 2.90 2.79 2.30 1.60 2.35 2.26 1.43 2.13 8.70 4.21 2.46 5.00 2.80 1.54 1.20 2.32 2.26 4.39 0.56 1.73 4.08 1.24 2.31 3.92 6.82 2.35 1.41 3.57 2.43 4.00 5.00 0.93 K intron_retention CG12219 chrX - chrX_6193558_6193640 chrX_6193557_6193558;chrX_6193640_6193641 chrX_6193063_6193557;chrX_6193641_6193830 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 2.08 0.00 0.00 2.56 9.09 0.00 0.00 0.00 2.38 0.00 3.57 0.00 0.00 7.41 8.33 6.52 11.36 6.06 4.35 0.00 0.00 0.00 2.94 0.00 0.00 2.08 0.00 1.85 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 3.57 0.00 7.69 0.00 0.00 0.00 3.57 K jcn_only_AA Spred,I_chr2R_10655876_10656868 chr2R - chr2R_10650514_10651335 chr2R_10650580_10651335 chr2R_10651336_10651504;chr2R_10650450_10650513 90.14 89.69 98.08 86.42 94.34 95.00 98.48 90.14 88.97 93.22 92.45 88.54 94.12 90.91 97.06 85.11 82.14 93.10 85.71 89.34 97.83 88.31 87.50 94.87 90.14 90.00 91.30 42.86 88.68 95.16 92.54 89.36 87.72 96.34 88.00 71.43 92.94 89.02 94.94 84.85 80.00 96.61 95.83 90.00 80.00 93.02 83.82 88.73 97.70 68.97 92.47 78.79 91.38 85.29 92.65 95.95 90.91 88.89 K intron_retention CG7970 chr3L + chr3L_1653255_1653316 chr3L_1653254_1653255;chr3L_1653316_1653317 chr3L_1653142_1653254;chr3L_1653317_1653575 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.34 1.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.00 K intron_retention CG9911 chrX - chrX_16188347_16188420 chrX_16188346_16188347;chrX_16188420_16188421 chrX_16188148_16188346;chrX_16188421_16188687 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 N intron_retention alc,I_chr2R_5023501_5023700 chr2R - chr2R_5023501_5025265 chr2R_5023500_5023501;chr2R_5025265_5025266 chr2R_5023401_5023500;chr2R_5025266_5025455 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 69.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Qm,RI_chr3L_23084218_23087783,REI_chr3L_23086979_23087779,RE_chr3L_23086979_23087782,I_chr3L_23087712_23087783,E_chr3L_23087825_23087922,RI_chr3L_23087947_23088093 chr3L - chr3L_23086979_23087783 chr3L_23086978_23086979;chr3L_23087783_23087784 chr3L_23086879_23086978;chr3L_23087784_23087824 0.06 0.00 0.06 0.18 0.00 0.07 0.08 0.08 0.08 0.11 0.08 0.09 0.09 0.12 0.02 0.10 0.00 0.03 0.05 0.02 0.00 0.09 0.06 0.00 0.00 0.00 0.08 0.30 0.23 0.08 0.03 0.06 0.10 0.07 0.04 0.17 0.00 0.00 0.03 0.04 0.08 0.03 0.03 0.00 0.06 0.06 0.00 0.02 0.08 0.10 0.05 0.00 0.06 0.05 0.05 0.06 0.08 0.03 K jcn_only_AD CG33298 chr2L + chr2L_9495712_9503592;chr2L_9495657_9503592 chr2L_9496256_9503592 chr2L_9503593_9504813;chr2L_9495488_9495656 93.75 95.45 87.10 96.61 82.61 NA 97.96 95.95 93.33 NA 91.30 100.00 86.11 94.59 93.75 94.87 92.68 100.00 93.18 96.77 78.26 81.82 NA NA NA NA NA NA NA NA 100.00 NA NA 89.04 100.00 NA NA NA NA 85.71 NA 90.62 97.30 NA NA NA NA NA 95.52 NA NA NA NA NA 89.74 NA NA NA K cassette Rab11,I_chr3R_16937578_16940474,I_chr3R_16937759_16939667,RE_chr3R_16939259_16939667 chr3R + chr3R_16937578_16940474 chr3R_16937578_16939667;chr3R_16939790_16940474 chr3R_16939668_16939789 chr3R_16937478_16937577;chr3R_16940475_16940574 99.87 100.00 100.00 100.00 99.71 99.72 99.81 100.00 99.88 100.00 99.72 100.00 99.69 100.00 99.78 100.00 99.70 99.74 100.00 99.87 99.72 97.90 99.39 99.77 99.24 99.57 100.00 100.00 96.47 99.67 99.76 100.00 100.00 100.00 100.00 99.64 100.00 100.00 99.77 99.80 99.71 99.87 100.00 99.70 100.00 100.00 100.00 99.28 100.00 99.71 100.00 100.00 99.59 100.00 99.80 99.72 100.00 100.00 K alternative_acceptor stck,I_chr3R_4184313_4184380,I_chr3R_4184660_4184730 chr3R + chr3R_4184313_4184380 chr3R_4184313_4184370 chr3R_4184213_4184312;chr3R_4184381_4184446 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.57 99.06 100.00 100.00 99.05 96.88 100.00 98.08 100.00 97.37 100.00 100.00 100.00 100.00 98.41 100.00 98.63 100.00 100.00 98.68 100.00 97.96 100.00 98.15 97.06 100.00 100.00 100.00 100.00 98.97 100.00 100.00 100.00 100.00 99.02 97.22 100.00 100.00 98.61 100.00 100.00 98.97 98.33 100.00 97.30 100.00 100.00 100.00 98.36 99.12 100.00 K intron_retention c11_1 chrX - chrX_9170301_9170361 chrX_9170300_9170301;chrX_9170361_9170362 chrX_9169612_9170300;chrX_9170362_9170464 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.45 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention cora,I_chr2R_15125277_15130573,I_chr2R_15125940_15130208,I_chr2R_15129291_15129988 chr2R + chr2R_15129901_15130208 chr2R_15129900_15129901;chr2R_15130208_15130209 chr2R_15129679_15129900;chr2R_15130209_15130308 53.33 NA NA NA NA NA 20.00 NA 53.33 NA NA 50.00 35.71 NA NA NA NA NA NA NA NA NA NA NA NA 31.25 87.50 54.55 NA NA NA NA NA 70.00 NA NA NA NA NA 41.67 NA 63.64 NA NA 38.46 NA NA NA 63.64 NA 63.64 NA NA NA NA NA NA NA K alternative_acceptor CG16952,RI_chrX_15764587_15765393,I_chrX_15766003_15766047 chrX + chrX_15765557_15765895 chrX_15765557_15765891 chrX_15765408_15765556;chrX_15765896_15766002 90.91 90.00 NA 80.00 NA NA 90.91 92.31 91.67 NA NA 90.91 100.00 NA NA 75.00 NA NA 100.00 88.89 NA NA NA NA NA NA NA NA NA NA NA NA NA 91.67 NA NA NA NA NA NA NA 90.91 NA NA NA NA NA NA 93.75 NA 88.89 NA NA NA 90.91 NA NA NA K intron_retention CG4360 chr3R - chr3R_16152521_16152594 chr3R_16152520_16152521;chr3R_16152594_16152595 chr3R_16152038_16152520;chr3R_16152595_16153716 2.41 1.03 0.87 5.73 3.11 1.55 2.00 3.23 2.22 1.38 1.38 2.21 0.00 1.29 2.48 2.65 0.00 2.14 2.12 2.36 0.61 4.04 2.11 2.25 3.98 2.49 4.30 7.73 13.48 3.05 2.42 1.30 3.37 1.56 2.48 0.60 2.59 1.57 2.69 2.59 3.33 1.18 2.41 2.30 1.85 2.60 3.21 3.45 2.22 3.03 2.95 3.61 1.53 3.31 1.33 2.56 3.54 1.00 K jcn_only_AA CG2224 chr3R - chr3R_26283127_26283184 chr3R_26283140_26283184 chr3R_26283185_26283500;chr3R_26283014_26283126 0.00 0.00 0.00 1.85 0.00 0.00 1.92 0.00 3.45 NA 0.00 1.96 0.00 7.41 0.00 0.00 3.03 2.78 0.00 0.00 0.00 0.00 1.75 2.17 7.41 2.86 3.33 NA 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 2.56 0.00 3.85 0.00 0.00 0.00 0.00 0.00 5.13 0.00 0.00 0.00 0.00 2.70 8.57 0.00 0.00 K intron_retention PGRP-SA,CG11695 chrX + chrX_11456491_11456551 chrX_11456490_11456491;chrX_11456551_11456552 chrX_11456372_11456490;chrX_11456552_11456815 0.46 0.43 0.00 1.44 0.00 0.59 1.41 0.61 0.40 0.00 0.31 0.40 0.49 0.37 0.26 0.94 0.00 1.39 0.66 1.14 0.00 2.57 0.51 0.48 2.34 1.99 1.31 0.38 5.17 0.00 0.85 0.00 0.36 0.69 0.54 1.21 0.44 0.00 0.00 0.54 1.26 0.75 0.00 0.00 0.43 1.29 0.43 1.10 0.39 0.46 0.42 0.00 0.00 0.65 0.33 0.66 0.47 0.00 N jcn_only_AD Inos,I_chr2R_3344353_3345211,noncoding_4874 chr2R - chr2R_3344353_3345211;chr2R_3344353_3346212;chr2R_3344353_3344799 chr2R_3344353_3346113 chr2R_3344253_3344352;chr2R_3346213_3346215 99.20 99.22 99.84 99.26 99.49 99.61 98.93 99.81 98.90 99.94 98.51 98.33 99.72 100.00 98.78 98.43 99.89 98.45 100.00 99.14 98.88 96.06 99.26 99.02 99.28 99.85 99.64 99.08 98.09 98.66 98.14 98.53 96.75 98.78 99.74 99.76 99.83 99.32 99.02 98.75 99.71 99.20 98.16 99.78 99.07 98.90 99.66 99.95 98.81 99.44 98.98 99.81 99.73 99.10 98.64 99.02 99.43 99.48 K alternative_acceptor cmet chr2L - chr2L_11261449_11261510 chr2L_11261455_11261510 chr2L_11261511_11262004;chr2L_11260848_11261448 100.00 94.74 93.75 100.00 100.00 100.00 100.00 97.14 100.00 NA 93.75 96.55 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 92.86 NA 93.33 100.00 100.00 94.74 95.24 NA NA 88.89 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 92.86 95.83 NA 93.94 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 N intron_retention RI_chrX_22094836_22142377,noncoding_25169 chrX + chrX_22120111_22120222 chrX_22120110_22120111;chrX_22120222_22120223 chrX_22120097_22120110;chrX_22120223_22120518 8.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.11 K alternative_acceptor Trap1 chr2R - chr2R_2521435_2521515;chr2R_2521454_2521515 chr2R_2521438_2521515 chr2R_2521516_2521564;chr2R_2521152_2521434 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD CG8678,RI_chr2L_21213167_21213227 chr2L - chr2L_21214648_21220259 chr2L_21214648_21215016 chr2L_21213917_21214647;chr2L_21220260_21220516 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 40.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA K jcn_only_AA rdgA chrX + chrX_8910362_8911891;chrX_8910362_8911876 chrX_8910362_8911894 chrX_8910158_8910361;chrX_8911895_8912021 90.00 NA NA NA NA 90.00 NA NA 90.00 NA NA 86.96 NA NA NA NA NA NA NA 93.33 NA 95.24 95.00 NA NA NA NA NA NA NA NA NA NA 89.66 NA NA 96.43 NA 83.33 NA NA 73.08 NA NA NA NA NA NA 92.86 NA NA NA NA NA 90.00 NA NA NA K alternative_acceptor CG32582,I_chrX_15730402_15730457 chrX + chrX_15730431_15730557 chrX_15730431_15730489 chrX_15730315_15730430;chrX_15730558_15730707 29.70 NA 44.44 44.44 NA NA 54.55 46.67 45.00 NA 27.27 50.00 NA 36.36 27.27 45.45 33.33 27.27 35.71 35.71 NA NA 17.65 33.33 NA NA 20.00 NA NA NA 46.15 NA NA 37.50 NA 50.00 23.08 29.41 NA 21.05 30.00 29.17 44.44 13.64 25.00 14.29 27.27 NA 31.03 28.57 36.84 18.18 21.43 18.75 47.06 26.32 20.00 16.67 K intron_retention I_chrX_7993650_7995126,Gclc chrX - chrX_7999928_8009449 chrX_7999927_7999928;chrX_8009449_8009450 chrX_7999301_7999927;chrX_8009450_8009613 10.73 15.66 25.32 12.31 21.74 20.97 13.60 16.56 25.67 6.12 8.82 16.80 12.31 21.21 12.24 20.66 20.83 10.00 16.50 10.73 8.22 12.87 14.88 5.43 7.89 11.36 6.50 9.82 9.17 7.58 16.03 0.00 8.76 24.03 17.74 3.97 8.94 10.98 5.43 7.97 2.70 20.26 17.57 7.18 0.00 1.12 7.50 8.57 18.88 4.17 12.17 11.32 2.86 4.00 21.43 5.45 4.35 3.37 K alternative_acceptor cals,I_chr4_1136706_1138476,RI_chr4_1137077_1137140,I_chr4_1139644_1142084,RI_chr4_1141233_1142084 chr4 - chr4_1137077_1137140 chr4_1137083_1137140 chr4_1137141_1137224;chr4_1136977_1137076 100.00 100.00 100.00 97.37 90.00 100.00 100.00 97.87 96.23 NA 100.00 100.00 94.74 100.00 91.67 98.15 100.00 93.75 100.00 96.88 100.00 100.00 95.00 94.12 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA 97.50 94.44 NA 100.00 100.00 100.00 94.44 NA 100.00 100.00 96.00 NA 96.30 100.00 NA 100.00 95.65 96.67 100.00 87.50 100.00 93.33 94.12 100.00 90.91 K alternative_acceptor R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8088517_8089393 chr2L_8088517_8089184 chr2L_8088459_8088516;chr2L_8089394_8089493 82.57 69.23 91.67 70.00 NA 83.33 90.24 87.88 90.91 77.78 85.71 85.19 74.07 83.33 75.00 92.45 87.50 80.00 83.33 94.44 83.33 92.31 70.00 71.43 91.67 76.47 64.29 76.47 88.89 54.55 100.00 71.43 81.82 77.42 77.78 92.31 50.00 66.67 80.00 94.12 87.50 75.86 76.92 60.00 83.33 83.33 55.56 83.33 91.18 60.00 78.57 90.00 NA NA 65.00 83.33 50.00 92.31 K intron_retention Neb-cGP,CG2889 chrX + chrX_10354882_10354952 chrX_10354881_10354882;chrX_10354952_10354953 chrX_10354790_10354881;chrX_10354953_10355029 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.79 1.89 0.00 3.19 1.23 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 1.08 0.00 5.71 3.67 5.45 26.79 0.00 0.00 0.00 0.00 0.00 2.38 6.90 0.57 0.00 1.22 1.72 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 1.54 0.00 0.00 4.88 0.00 1.80 0.00 2.21 0.00 K jcn_only_AA CG32809,I_chrX_1576815_1577129,I_chrX_1577031_1577129,CEI_chrX_1579569_1579679,RI_chrX_1585391_1586471,I_chrX_1589508_1589564 chrX - chrX_1571099_1571167 chrX_1571112_1571167 chrX_1571168_1571350;chrX_1570956_1571098 4.55 2.50 4.55 6.90 NA 4.55 8.33 0.00 5.00 4.76 0.00 2.44 NA 10.00 0.00 NA 4.17 NA 7.41 1.47 NA 4.44 6.38 4.55 2.50 4.55 4.00 0.00 7.27 4.82 3.23 5.66 3.54 5.41 4.65 5.45 3.57 16.13 3.90 4.76 4.65 3.17 NA 2.94 2.90 1.54 5.56 3.55 4.88 NA 5.88 NA NA 7.14 7.69 5.88 NA 6.45 K jcn_only_AD CG17082,I_chr2R_632143_635290,R_chr2R_642176_644740,I_chr2R_644094_644145,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_631984_636726;chr2R_632083_636726;chr2R_631907_636726;chr2R_632143_636726 chr2R_631971_636726 chr2R_636727_636891;chr2R_631902_631906 2.44 NA NA 4.26 NA NA 7.89 0.00 2.44 NA NA 4.76 NA 0.00 NA 2.78 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 6.25 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD Rga,I_chr3R_1436346_1436552,I_chr3R_1436346_1437602,I_chr3R_1436346_1437897,I_chr3R_1437726_1437791,Spec2 chr3R - chr3R_1436346_1436552;chr3R_1436346_1437791 chr3R_1436346_1437897 chr3R_1436246_1436345;chr3R_1437898_1437963 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.95 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.94 0.00 1.11 1.08 0.93 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Anxb11,I_chrX_16314152_16314405,I_chrX_16314152_16315813 chrX - chrX_16313804_16314082 chrX_16313803_16313804;chrX_16314082_16314083 chrX_16313237_16313803;chrX_16314083_16314148 4.29 NA 0.00 14.29 NA NA NA 0.00 0.00 NA NA 0.00 NA 7.69 NA 15.38 NA 0.00 NA 8.33 NA 1.43 NA NA NA NA NA NA 15.38 0.00 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 12.50 NA 11.11 NA 12.50 NA 21.43 0.00 7.14 NA NA NA NA NA NA NA 8.33 K cassette scrib,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22416440_22424298 chr3R_22416440_22423368;chr3R_22423846_22424298 chr3R_22423369_22423845 chr3R_22416340_22416439;chr3R_22424299_22424434 55.91 46.67 62.50 44.44 41.67 57.14 56.25 47.62 55.00 60.00 NA 52.63 71.43 42.86 58.33 87.50 80.00 44.44 66.67 56.52 10.00 41.86 58.33 64.71 60.00 50.00 66.67 57.14 62.50 55.56 60.00 35.29 56.25 53.85 50.00 81.08 43.33 29.41 57.14 67.86 72.73 70.00 50.00 59.09 46.88 56.52 53.33 53.66 64.71 38.46 58.82 55.56 47.83 50.00 61.54 50.00 36.36 42.11 K alternative_donor akirin,I_chr3L_7363173_7364806,I_chr3L_7363177_7364806,I_chr3L_7363177_7364831,I_chr3L_7363211_7364831,I_chr3L_7363731_7364806,I_chr3L_7364126_7364806,RI_chr3L_7364737_7364806 chr3L + chr3L_7363177_7364831;chr3L_7363211_7364831 chr3L_7363169_7364831 chr3L_7364832_7364906;chr3L_7363111_7363168 13.04 12.63 6.58 3.62 10.13 8.20 4.79 8.33 10.63 19.15 5.80 12.88 13.86 19.51 9.57 21.19 9.38 13.64 11.76 9.30 11.25 23.44 17.28 16.67 14.29 7.23 10.43 16.09 10.00 30.49 17.17 30.00 57.33 8.82 14.29 8.22 13.04 14.86 18.75 19.83 12.82 12.50 9.86 5.92 12.20 18.92 13.89 26.67 16.86 28.57 12.96 12.20 17.24 14.08 8.26 15.19 15.38 24.00 K intron_retention pps chr3R + chr3R_8242311_8242369 chr3R_8242310_8242311;chr3R_8242369_8242370 chr3R_8240593_8242310;chr3R_8242370_8242851 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.51 0.00 0.00 0.00 6.67 0.87 0.00 1.32 0.00 0.00 0.00 0.00 2.17 1.23 2.88 0.00 0.00 0.00 2.29 0.00 0.00 0.00 0.67 2.56 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.57 1.25 0.00 1.15 0.00 0.00 0.00 0.00 0.00 2.38 0.00 K intron_retention CG7029,CG7023,F_chr3R_18601121_18601300 chr3R + chr3R_18592449_18600470 chr3R_18592448_18592449;chr3R_18600470_18600471 chr3R_18592333_18592448;chr3R_18600471_18602057 40.45 33.33 36.84 47.06 NA 43.75 82.35 47.83 58.62 NA 15.38 38.46 15.38 53.33 40.00 38.46 53.85 NA 40.91 52.00 NA NA 22.22 NA NA 80.00 NA NA NA NA 41.18 NA 41.67 43.33 77.78 NA NA NA NA 26.09 NA 42.31 35.29 NA NA 26.67 NA 25.00 48.15 NA 25.00 NA NA NA 25.00 NA 7.69 16.67 K jcn_only_AA spri,I_chrX_10404621_10469422,I_chrX_10413811_10440661,I_chrX_10417598_10440661 chrX - chrX_10438538_10440661 chrX_10438626_10440661 chrX_10440662_10440749;chrX_10438419_10438537 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention svr,RI_chrX_421417_421591 chrX + chrX_390582_390645 chrX_390581_390582;chrX_390645_390646 chrX_390575_390581;chrX_390646_391422 100.00 NA 100.00 100.00 NA 88.89 100.00 100.00 96.77 NA 88.89 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 91.67 NA 100.00 100.00 NA 100.00 100.00 NA NA NA 90.91 NA NA 96.30 NA 100.00 NA NA NA 94.12 NA 96.15 100.00 100.00 NA NA NA NA 96.43 NA 100.00 100.00 NA NA 90.91 NA 100.00 NA K alternative_acceptor Gpdh chr2L + chr2L_5947333_5948406 chr2L_5947333_5947856 chr2L_5947240_5947332;chr2L_5948407_5948574 100.00 100.00 100.00 100.00 100.00 100.00 80.00 95.24 100.00 100.00 NA 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 91.67 50.00 NA 88.89 100.00 NA 80.00 100.00 NA NA 100.00 100.00 100.00 83.33 100.00 100.00 NA NA 100.00 66.67 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 87.50 95.24 100.00 100.00 75.00 83.33 100.00 100.00 87.50 100.00 88.89 K intron_retention CG10365,I_chr3R_19554176_19554388 chr3R + chr3R_19556450_19556515 chr3R_19556449_19556450;chr3R_19556515_19556516 chr3R_19556371_19556449;chr3R_19556516_19557227 0.00 0.00 2.44 0.00 1.56 3.08 1.59 0.00 0.00 1.72 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 2.86 5.49 0.00 1.32 0.92 0.00 0.00 0.00 1.05 0.00 0.00 0.68 0.00 0.00 1.01 1.19 0.89 0.00 0.00 0.00 0.00 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 K intron_retention mth chr3L - chr3L_344040_344106 chr3L_344039_344040;chr3L_344106_344107 chr3L_344021_344039;chr3L_344107_344301 15.38 NA NA NA NA NA NA 30.77 NA NA 7.14 NA NA NA NA NA NA 0.00 NA 33.33 11.11 9.09 NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA 38.46 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.38 NA K intron_retention Axn,I_chr3R_25849563_25849626 chr3R + chr3R_25858750_25858806 chr3R_25858749_25858750;chr3R_25858806_25858807 chr3R_25858653_25858749;chr3R_25858807_25858938 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.99 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 6.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 K intron_retention tral,I_chr3L_12512171_12512251 chr3L + chr3L_12511768_12511829 chr3L_12511767_12511768;chr3L_12511829_12511830 chr3L_12511538_12511767;chr3L_12511830_12512170 0.00 0.00 0.00 0.00 NA 5.88 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA 0.00 6.67 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 13.79 13.79 10.81 6.25 0.00 0.00 0.00 0.00 3.57 0.00 1.96 0.00 2.17 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Jhebp29,RI_chr2R_20857941_20857992,RI_chr2R_20857941_20858127 chr2R + chr2R_20857941_20858127 chr2R_20857940_20857941;chr2R_20858127_20858128 chr2R_20857841_20857940;chr2R_20858128_20858227 91.23 96.43 92.86 98.25 93.94 94.29 86.79 86.57 91.14 94.12 93.94 93.44 87.10 88.57 95.00 92.31 96.55 89.47 89.47 90.70 90.91 61.90 88.89 97.44 83.33 91.11 92.11 95.00 56.76 95.24 93.02 92.59 86.05 92.16 87.50 80.77 96.97 78.95 81.25 92.73 89.74 94.03 96.00 93.33 97.14 90.91 92.86 87.50 91.23 75.68 87.50 100.00 86.67 84.38 91.49 87.50 91.07 95.31 N mutually_exclusive unc-13,I_chr4_897821_902468,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_897821_902468,chr4_902576_903586;chr4_897821_903242,chr4_903350_903586 chr4_897821_899476,chr4_899619_903586 chr4_902469_902575;chr4_903243_903349 chr4_899477_899618 chr4_897721_897820;chr4_903587_903686 53.85 42.86 36.36 57.89 66.67 50.00 18.75 36.36 40.62 83.33 NA 42.86 72.73 53.85 50.00 64.29 42.86 60.00 63.64 16.67 42.86 14.29 69.23 60.00 54.55 78.95 50.00 40.00 50.00 63.64 27.59 50.00 81.25 54.55 72.22 86.21 NA 57.14 75.00 50.00 63.64 76.19 60.00 53.85 50.00 60.00 50.00 46.67 72.97 33.33 73.33 50.00 50.00 NA 40.00 NA 42.86 76.92 K jcn_only_AD CG4365 chr3L + chr3L_20791960_20792242;chr3L_20792089_20792242;chr3L_20791819_20792242;chr3L_20792100_20792242 chr3L_20792077_20792242 chr3L_20792243_20793181;chr3L_20791802_20791818 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 1.72 0.00 K intron_retention Psi,I_chr2R_12751549_12752073,I_chr2R_12753387_12753659 chr2R - chr2R_12751557_12752073 chr2R_12751556_12751557;chr2R_12752073_12752074 chr2R_12750179_12751556;chr2R_12752074_12752173 66.67 NA 66.67 53.12 50.00 76.92 66.67 56.76 75.00 NA 43.75 62.50 75.00 68.42 65.00 73.53 56.25 66.67 63.64 64.58 53.85 NA 75.00 73.33 81.82 64.71 60.00 72.73 70.00 56.52 66.67 52.63 43.33 61.76 73.33 26.67 81.82 63.64 70.00 75.00 69.57 62.96 57.14 66.67 69.23 55.56 91.67 65.85 75.00 NA 70.00 77.78 66.67 66.67 57.14 52.38 75.00 56.76 K intron_retention CG3209,I_chr2R_19957751_19959513,RI_chr2R_19957766_19960227,I_chr2R_19959163_19959513 chr2R + chr2R_19957766_19960227 chr2R_19957765_19957766;chr2R_19960227_19960228 chr2R_19957666_19957765;chr2R_19960228_19960327 4.94 4.44 4.59 7.50 1.72 5.62 4.66 3.17 4.45 4.94 8.33 5.68 2.94 6.52 3.42 5.95 4.60 6.76 2.88 7.73 11.76 2.94 5.00 5.07 6.86 4.72 6.21 5.11 2.92 7.48 6.74 2.15 5.39 6.55 4.26 5.41 4.02 6.34 4.12 6.54 5.61 4.35 7.32 4.10 3.20 5.47 3.05 10.20 5.70 3.88 4.49 4.82 3.96 2.08 5.52 1.65 2.22 5.88 K cassette CG10353,I_chrX_11775936_11778830,I_chrX_11778617_11778830,RI_chrX_11780885_11780988 chrX - chrX_11777655_11780988;chrX_11775936_11780988 chrX_11777655_11778830,chrX_11775936_11778830;chrX_11779315_11780988 chrX_11778831_11779314 chrX_11775836_11775935;chrX_11780989_11781085 14.81 12.31 19.44 12.50 10.64 22.22 21.15 16.28 13.27 15.91 13.79 15.71 6.67 22.58 15.00 23.21 16.67 32.35 15.38 29.87 9.52 25.00 8.25 16.00 14.29 14.29 11.11 9.76 8.82 9.86 14.81 10.71 10.24 15.25 13.95 15.62 10.14 11.11 11.90 10.45 12.68 18.28 21.05 5.88 17.54 14.77 21.28 13.77 19.67 17.31 13.70 11.54 20.31 12.50 16.28 15.69 25.35 26.19 K alternative_acceptor eIF-1A chr3R + chr3R_14100479_14100547;chr3R_14100479_14100566 chr3R_14100479_14100588 chr3R_14100417_14100478;chr3R_14100589_14100702 98.91 98.90 99.33 99.20 98.76 99.01 99.26 99.07 99.38 98.15 99.04 99.13 98.78 100.00 99.45 99.33 99.28 99.15 99.26 99.35 99.01 97.18 98.64 98.60 97.92 97.40 98.91 97.06 96.13 97.78 99.53 98.08 100.00 98.75 100.00 99.02 97.64 98.74 99.45 98.43 98.55 99.20 98.83 96.38 99.40 97.47 99.30 96.49 99.29 98.89 98.99 97.79 98.67 98.25 98.89 99.26 98.94 93.94 K jcn_only_AD l(1)G0289,I_chrX_10254197_10254506,I_chrX_10254197_10259575 chrX - chrX_10254197_10260156 chrX_10254197_10254506 chrX_10254097_10254196;chrX_10260157_10260387 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.38 0.21 0.00 0.00 0.44 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.46 0.27 0.39 0.29 0.85 0.00 0.78 0.84 0.56 0.29 0.82 0.00 0.00 0.00 0.00 0.24 0.23 0.34 0.00 0.00 0.63 0.20 0.00 0.54 0.43 0.00 0.32 0.19 0.00 0.00 0.00 0.41 0.27 0.00 0.32 0.00 0.00 0.29 K intron_retention CG13933,I_chr3L_1773911_1773984 chr3L - chr3L_1772319_1772487 chr3L_1772318_1772319;chr3L_1772487_1772488 chr3L_1772022_1772318;chr3L_1772488_1773369 90.91 83.33 93.33 96.88 100.00 72.73 78.26 100.00 88.89 NA NA 78.26 80.00 100.00 90.91 85.71 91.67 88.24 90.00 96.55 60.00 90.91 90.91 100.00 93.33 90.91 87.50 61.54 90.91 86.67 85.71 88.89 85.71 91.67 81.82 90.91 91.67 NA 92.31 94.12 92.31 96.00 100.00 70.00 100.00 87.50 93.75 91.67 93.10 81.25 91.67 NA NA 93.33 88.24 87.50 100.00 71.43 K multi_cassette CG11266,RI_chr2L_7033019_7033182,RI_chr2L_7033019_7034180,RI_chr2L_7033019_7034764,I_chr2L_7034274_7034764,I_chr2L_7034274_7035406,RI_chr2L_7034911_7035074,I_chr2L_7051093_7051366 chr2L + chr2L_7033019_7035406 chr2L_7033019_7034483;chr2L_7034694_7034764;chr2L_7034913_7035406 chr2L_7034484_7034693;chr2L_7034765_7034912 chr2L_7032919_7033018;chr2L_7035407_7035506 8.45 4.88 14.81 4.65 8.33 15.00 14.29 23.08 10.00 4.44 10.53 20.63 28.00 26.67 10.00 28.57 21.05 3.57 20.83 8.11 10.53 5.63 9.76 6.82 2.22 6.06 12.82 0.00 1.33 2.63 22.58 6.12 1.22 13.51 9.52 NA 3.92 6.25 8.89 7.00 2.44 10.00 21.05 10.81 1.00 3.75 4.65 3.20 15.69 5.56 10.81 8.57 2.22 6.25 20.00 12.82 5.71 3.08 K intron_retention CG8920 chr2R + chr2R_16208194_16209182 chr2R_16208193_16208194;chr2R_16209182_16209183 chr2R_16208052_16208193;chr2R_16209183_16209405 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 6.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention Rpn6,I_chr2R_10639546_10639733 chr2R - chr2R_10638222_10638287 chr2R_10638221_10638222;chr2R_10638287_10638288 chr2R_10637656_10638221;chr2R_10638288_10638500 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.66 0.00 0.00 0.00 0.00 0.42 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.39 K intron_retention RpS13,RI_chr2L_8364316_8364396,I_chr2L_8364316_8364541 chr2L - chr2L_8364316_8364540 chr2L_8364315_8364316;chr2L_8364540_8364541 chr2L_8364216_8364315;chr2L_8364541_8364766 0.08 0.08 0.08 0.06 0.00 0.05 0.06 0.05 0.05 0.00 0.02 0.06 0.03 0.07 0.04 0.06 0.06 0.06 0.07 0.02 0.09 0.41 0.00 0.74 1.08 0.03 2.41 0.51 0.24 0.25 0.12 0.03 0.08 0.06 0.54 0.37 0.54 0.00 0.40 0.10 0.10 0.06 0.02 0.13 0.12 0.14 0.00 0.07 0.11 0.96 1.19 0.50 0.09 1.35 0.06 0.65 0.54 0.04 K alternative_donor su(f),I_chrXHet_77570_78035 chrXHet + chrXHet_77736_78035;chrXHet_77832_78035 chrXHet_77570_78035 chrXHet_78036_78135;chrXHet_77470_77569 1.41 0.00 1.00 3.42 2.82 1.23 0.00 1.38 1.27 1.82 1.41 0.00 0.00 2.82 0.94 2.06 1.61 1.41 2.30 2.65 1.43 14.81 0.88 2.68 1.37 1.05 0.00 1.96 1.59 2.44 5.45 3.90 1.08 0.77 1.52 1.27 0.00 3.57 1.45 6.52 1.32 2.31 1.39 0.00 1.14 2.02 1.18 3.31 0.65 3.33 0.92 1.69 1.54 2.82 0.88 1.16 1.00 2.80 K intron_retention CG9855,RI_chr3R_222522_222581,RI_chr3R_222525_222604,I_chr3R_223384_223429 chr3R - chr3R_222525_222604 chr3R_222524_222525;chr3R_222604_222605 chr3R_222457_222524;chr3R_222605_222650 100.00 88.89 100.00 94.44 100.00 92.86 100.00 100.00 95.83 NA 100.00 100.00 NA 100.00 92.31 92.31 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 NA NA 91.67 100.00 94.74 100.00 100.00 94.44 96.88 92.86 87.50 100.00 91.67 87.50 100.00 97.37 100.00 93.33 100.00 100.00 100.00 100.00 90.91 97.83 95.00 100.00 100.00 NA 92.86 100.00 100.00 90.00 100.00 97.83 K cassette ssp4,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13416358_13418551 chr2R_13416358_13416591;chr2R_13416697_13418551 chr2R_13416592_13416696 chr2R_13416127_13416357;chr2R_13418552_13418652 100.00 100.00 100.00 99.01 100.00 100.00 98.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.53 100.00 100.00 100.00 99.25 100.00 100.00 100.00 100.00 100.00 100.00 96.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.07 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention RI_chrX_7172561_7252693,CG1677,I_chrX_7178792_7252693,unc-119,I_chrX_7183298_7183371,RI_chrX_7183298_7184274 chrX - chrX_7183298_7183538 chrX_7183297_7183298;chrX_7183538_7183539 chrX_7183198_7183297;chrX_7183539_7183711 8.33 NA 12.50 12.50 NA 6.25 5.26 11.54 9.38 NA NA 4.17 14.29 NA NA 13.64 NA NA 17.39 16.67 NA 0.00 8.00 11.76 NA 0.00 5.00 NA NA NA 12.50 NA NA 8.33 NA 11.76 NA 0.00 5.88 8.33 NA 10.53 NA NA 14.29 7.69 8.33 NA 12.00 NA 0.00 14.29 NA 0.00 6.25 0.00 4.35 NA K intron_retention TBPH,I_chr2R_19748981_19749882,I_chr2R_19748981_19749921,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19748981_19749783 chr2R_19748980_19748981;chr2R_19749783_19749784 chr2R_19748884_19748980;chr2R_19749784_19750104 27.69 20.00 26.92 28.57 25.00 23.81 31.82 25.45 27.78 NA 17.65 23.21 29.17 15.38 27.59 28.95 20.83 37.50 14.29 32.14 19.23 42.31 20.00 26.09 48.15 18.75 30.30 25.00 65.22 42.86 20.00 42.11 57.14 28.57 37.50 44.00 28.57 25.00 30.56 24.24 48.00 21.57 7.69 30.00 31.25 37.50 23.08 40.00 33.33 29.63 23.08 20.00 38.46 8.33 27.59 25.00 15.38 39.47 N cassette trol,I_chrX_2391522_2395659 chrX - chrX_2415822_2417437 chrX_2415822_2416256;chrX_2416455_2417437 chrX_2416257_2416454 chrX_2415567_2415821;chrX_2417438_2417562 100.00 100.00 100.00 35.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD fat2 chr3L + chr3L_20016740_20017255 chr3L_20017083_20017255 chr3L_20017256_20017387 0.00 3.33 4.55 4.17 0.00 0.00 0.97 0.00 0.00 NA 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 2.50 NA 0.00 2.63 4.35 2.86 0.00 0.00 2.63 0.00 0.00 3.85 0.00 0.00 NA NA 0.00 0.00 3.49 0.00 2.04 0.00 1.59 0.00 2.13 0.00 1.82 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Bap55,EDTP chr2R - chr2R_13318068_13318146 chr2R_13318067_13318068;chr2R_13318146_13318147 chr2R_13317225_13318067;chr2R_13318147_13318448 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor bel,I_chr3R_4483665_4483736,I_chr3R_4484110_4485922 chr3R - chr3R_4483566_4483736 chr3R_4483665_4483736 chr3R_4483737_4483836;chr3R_4483565_4483565 0.51 0.00 0.00 1.00 0.00 0.00 5.88 1.65 0.97 0.00 0.00 1.28 3.85 0.00 0.00 2.00 0.00 2.50 0.00 0.82 0.00 0.88 1.15 0.45 2.58 0.00 1.55 1.88 0.32 0.70 0.00 0.00 0.20 0.67 0.35 1.04 0.43 0.53 0.71 0.55 0.36 0.75 2.94 0.56 0.23 0.53 1.13 0.24 0.79 0.79 1.76 0.00 0.00 0.00 0.00 0.00 0.00 0.51 K alternative_donor RpL27A,E_chr2L_4457411_4457977,I_chr2L_4458058_4458120 chr2L - chr2L_4458058_4458288;chr2L_4458058_4458274;chr2L_4458058_4458140 chr2L_4458058_4458162 chr2L_4457978_4458057;chr2L_4458289_4458357 8.76 10.06 1.69 0.78 2.85 1.77 5.88 0.86 4.28 14.73 2.52 5.70 2.89 8.45 1.13 4.07 1.70 5.48 1.32 3.41 2.93 7.73 20.47 15.11 16.67 1.83 22.77 17.11 35.67 18.33 15.30 7.99 10.98 1.68 18.06 23.71 23.16 22.31 22.73 26.63 18.18 1.70 1.24 20.16 5.85 15.35 17.11 15.77 3.85 16.06 23.81 12.84 10.61 31.68 1.57 21.29 8.65 8.76 K jcn_only_AD I_chr2R_9844856_9845327,CG13349,RI_chr2R_9846641_9846709 chr2R - chr2R_9847615_9847732;chr2R_9847615_9847823 chr2R_9847615_9847752 chr2R_9847073_9847614;chr2R_9847824_9847834 0.00 0.00 0.90 0.00 1.05 0.00 0.56 0.47 0.31 0.00 1.14 0.49 0.90 0.96 0.71 1.12 0.00 0.00 0.75 0.78 0.76 0.00 0.61 1.92 1.03 2.40 0.00 0.00 0.00 0.00 0.84 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 1.72 0.00 1.19 0.00 0.00 0.00 0.41 0.98 0.72 0.00 0.00 1.11 1.42 0.00 0.00 0.00 K alternative_acceptor TepIV,EI_chr2L_19548696_19549582 chr2L + chr2L_19553916_19553969;chr2L_19553916_19553978 chr2L_19553916_19553975 chr2L_19553362_19553915;chr2L_19553979_19556092 95.26 92.68 89.23 95.50 98.25 97.83 93.81 96.27 91.72 92.86 95.89 95.97 95.79 97.06 93.15 97.67 93.75 97.22 94.94 93.75 93.85 94.67 96.77 94.32 97.87 94.74 96.47 93.92 95.29 95.70 96.39 92.59 96.15 96.26 96.30 90.41 93.69 98.11 96.47 93.33 95.83 95.27 95.08 95.26 94.69 95.21 94.38 94.58 95.04 96.12 96.34 94.92 96.43 93.88 94.94 94.44 97.78 95.95 N multi_cassette CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1525393_1529105 chr3L_1525393_1526333;chr3L_1526399_1526659;chr3L_1526732_1527189;chr3L_1527382_1527438;chr3L_1527614_1527673;chr3L_1528077_1529105 chr3L_1526334_1526398;chr3L_1526660_1526731;chr3L_1527190_1527381;chr3L_1527439_1527613;chr3L_1527674_1528076 chr3L_1525293_1525392;chr3L_1529106_1529206 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 35.29 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N alternative_acceptor CG18854,RI_chr2L_9789598_9789790,I_chr2L_9789694_9789790,REI_chr2L_9789718_9789790,I_chr2L_9790307_9790615,I_chr2L_9790310_9790556 chr2L - chr2L_9789733_9789790;chr2L_9789740_9789790;chr2L_9789694_9789790;chr2L_9789751_9789790;chr2L_9789598_9789790 chr2L_9789718_9789790 chr2L_9789791_9789832;chr2L_9789594_9789597 16.00 16.67 11.43 13.95 19.05 8.70 13.46 13.56 16.44 10.53 18.75 13.73 18.18 19.35 17.65 13.33 16.67 20.83 10.34 16.92 20.00 10.34 21.57 11.11 16.13 22.22 17.65 21.74 17.24 15.38 15.56 19.05 13.33 21.57 7.69 13.79 17.14 8.33 13.51 11.48 10.71 13.21 19.23 12.12 15.00 18.18 16.00 12.77 17.46 13.04 13.16 13.79 21.05 11.11 21.62 18.18 18.18 20.00 K intron_retention mrj,RI_chr2R_12093733_12108627,I_chr2R_12108697_12109174 chr2R - chr2R_12091887_12091946 chr2R_12091886_12091887;chr2R_12091946_12091947 chr2R_12091767_12091886;chr2R_12091947_12092259 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 3.17 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG5854,RI_chr3R_19760655_19760703 chr3R + chr3R_19760655_19760750 chr3R_19760655_19760703 chr3R_19760555_19760654;chr3R_19760751_19760803 0.43 0.00 0.78 0.00 0.00 0.52 0.36 0.64 0.95 0.00 0.56 0.00 0.59 0.00 0.00 0.00 0.53 0.46 1.45 0.00 0.00 0.80 0.66 0.51 0.52 0.00 0.00 1.44 0.00 1.38 0.00 0.51 0.73 0.00 1.19 0.00 0.39 0.28 0.47 0.81 0.70 0.43 0.00 0.34 0.49 0.40 0.85 1.42 0.00 0.00 0.00 0.00 0.42 1.52 0.00 0.67 0.57 0.71 K intron_retention mth chr3L - chr3L_345312_345374 chr3L_345311_345312;chr3L_345374_345375 chr3L_345158_345311;chr3L_345375_345442 6.67 8.70 7.14 5.56 0.00 8.00 9.68 11.86 9.23 0.00 9.09 8.89 6.67 4.35 6.67 0.00 7.41 0.00 3.12 7.50 0.00 5.26 6.06 0.00 4.76 16.00 2.94 NA NA NA 13.33 NA NA 11.54 13.33 23.08 10.81 5.56 0.00 5.88 NA 9.76 5.56 6.90 7.69 NA 0.00 11.11 8.16 0.00 3.23 4.76 NA NA 2.70 5.00 10.53 NA K intron_retention CG30193,CG30190 chr2R + chr2R_18816815_18817321 chr2R_18816814_18816815;chr2R_18817321_18817322 chr2R_18816773_18816814;chr2R_18817322_18817596 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.57 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.78 100.00 100.00 97.83 98.92 99.17 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 98.97 100.00 100.00 100.00 100.00 100.00 100.00 98.84 98.75 98.90 97.67 100.00 100.00 100.00 100.00 98.46 98.94 K alternative_acceptor TER94,RI_chr2R_5880423_5880471 chr2R + chr2R_5880423_5880488 chr2R_5880423_5880471 chr2R_5880323_5880422;chr2R_5880489_5880571 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.22 0.00 0.00 0.47 0.29 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.18 0.00 0.00 0.00 0.27 0.00 0.00 0.26 0.00 0.00 0.22 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 K jcn_only_AD Mtch,RI_chr3L_184729_185366,E_chr3L_185249_186012,EI_chr3L_185308_185366,I_chr3L_185367_185925 chr3L + chr3L_185304_185366;chr3L_185308_185366 chr3L_184729_185366 chr3L_185367_185441;chr3L_184713_184728 0.00 0.68 0.00 0.43 0.71 0.00 0.00 0.00 0.61 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.34 0.85 0.00 0.00 0.40 0.88 0.00 0.00 0.60 0.00 0.34 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.39 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention porin,I_chr2L_10848864_10849515 chr2L - chr2L_10848169_10848240 chr2L_10848168_10848169;chr2L_10848240_10848241 chr2L_10847092_10848168;chr2L_10848241_10848468 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.12 0.28 0.00 0.00 0.16 0.00 0.00 0.13 0.25 0.56 0.00 0.00 0.05 0.00 0.14 0.08 0.00 0.00 0.00 0.82 0.63 0.32 0.00 0.13 0.00 0.16 0.00 0.00 0.15 0.00 0.36 0.00 0.00 0.00 0.41 0.60 0.19 0.00 0.19 0.00 0.00 0.08 0.39 0.20 0.00 0.00 0.00 0.00 0.18 0.12 0.00 K alternative_acceptor CG8173,I_chrX_17602681_17603175 chrX - chrX_17602681_17603214 chrX_17602699_17603214 chrX_17603215_17603275;chrX_17602581_17602680 1.98 0.00 3.77 1.47 0.00 2.13 0.00 0.00 0.83 2.56 0.00 1.96 2.70 2.70 0.00 3.49 0.00 1.79 1.92 2.15 4.17 NA 4.62 2.78 0.00 0.00 4.76 0.00 6.25 2.13 2.44 0.00 3.77 2.90 1.75 0.00 2.15 1.85 2.00 0.00 6.45 1.10 0.00 2.22 1.72 2.00 3.28 2.63 1.41 0.00 2.67 0.00 2.56 1.64 3.85 4.76 0.00 4.55 K intron_retention Rab11,RE_chr3R_16939259_16939667 chr3R + chr3R_16937189_16937376 chr3R_16937188_16937189;chr3R_16937376_16937377 chr3R_16937129_16937188;chr3R_16937377_16937577 15.38 21.88 11.76 15.94 10.75 12.40 42.05 11.11 13.85 13.79 5.04 15.02 13.13 15.53 15.38 15.23 14.96 5.80 14.47 6.40 6.21 15.62 62.50 32.35 62.07 21.35 67.86 40.00 30.00 10.00 14.19 5.31 6.82 13.45 39.39 21.88 50.00 42.86 36.36 16.88 22.37 12.00 10.34 27.03 5.15 13.40 62.50 3.85 10.16 31.25 48.00 33.33 25.58 75.00 9.90 38.46 32.56 6.30 K intron_retention I_chr3L_1494947_1496080,pUf68,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1500389_1501345 chr3L_1500388_1500389;chr3L_1501345_1501346 chr3L_1500289_1500388;chr3L_1501346_1501397 100.00 NA NA NA NA NA NA 93.75 95.00 NA 100.00 90.00 93.75 90.00 NA 90.00 NA NA 100.00 81.82 100.00 NA 91.67 NA NA NA 100.00 100.00 NA 100.00 63.64 NA NA 91.67 100.00 NA 100.00 NA NA 100.00 NA 100.00 NA 92.86 NA 100.00 100.00 100.00 100.00 90.00 90.91 NA NA NA NA 90.00 NA 100.00 K alternative_donor ben chrX + chrX_13890789_13892127;chrX_13890791_13892127;chrX_13891016_13892127;chrX_13890793_13892127;chrX_13890762_13892127;chrX_13890795_13892127;chrX_13890990_13892127;chrX_13890831_13892127;chrX_13890648_13892127 chrX_13890768_13892127 chrX_13892128_13892800;chrX_13890644_13890647 0.00 NA NA 33.33 NA NA 0.00 0.00 20.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA 33.33 0.00 NA NA NA NA NA 0.00 NA 0.00 50.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 0.00 K jcn_only_AA kal-1 chr3R + chr3R_19972025_19972096 chr3R_19972025_19972087 chr3R_19971831_19972024;chr3R_19972097_19972461 99.56 99.45 100.00 99.17 97.18 100.00 99.30 99.45 99.67 100.00 99.08 98.65 100.00 100.00 99.44 99.48 99.12 100.00 100.00 100.00 100.00 100.00 99.56 99.49 98.84 100.00 100.00 99.00 99.44 99.36 99.46 100.00 98.97 98.80 100.00 99.38 100.00 100.00 99.23 100.00 99.51 100.00 100.00 98.66 100.00 99.67 99.48 97.65 99.02 99.08 99.63 100.00 100.00 100.00 99.45 100.00 100.00 98.89 K intron_retention Unc-76,RI_chrX_1983640_1985001,I_chrX_2002576_2003165 chrX + chrX_1985925_1985994 chrX_1985924_1985925;chrX_1985994_1985995 chrX_1985835_1985924;chrX_1985995_1987597 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 13.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 K alternative_acceptor CG15093 chr2R - chr2R_14664332_14664398 chr2R_14664344_14664398 chr2R_14664399_14664462;chr2R_14664047_14664331 20.83 23.26 16.00 17.74 20.59 21.43 16.33 22.22 15.79 26.09 26.67 20.00 19.05 17.65 20.93 14.89 22.22 23.08 20.45 29.67 26.67 16.67 16.22 20.83 17.65 17.86 21.43 6.25 19.51 26.67 25.00 23.33 24.44 21.43 33.33 16.67 11.24 16.33 20.83 15.24 33.33 19.48 33.33 11.43 29.79 27.12 30.30 21.95 17.65 14.29 20.00 14.29 24.39 23.81 24.32 19.61 18.18 25.00 K intron_retention klar,I_chr3L_462559_472609,RI_chr3L_517594_539898 chr3L - chr3L_436614_436673 chr3L_436613_436614;chr3L_436673_436674 chr3L_436222_436613;chr3L_436674_436849 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.83 0.00 0.67 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention cic chr3R + chr3R_16121571_16121630 chr3R_16121570_16121571;chr3R_16121630_16121631 chr3R_16120276_16121570;chr3R_16121631_16121847 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention E(bx),E_chr3L_234653_234836,I_chr3L_239186_239264,I_chr3L_246324_246699 chr3L - chr3L_234653_234981 chr3L_234652_234653;chr3L_234981_234982 chr3L_234568_234652;chr3L_234982_235345 5.26 5.56 4.55 16.67 0.00 0.00 12.50 6.85 8.05 NA 0.00 10.77 17.24 2.70 4.55 8.62 6.25 10.00 1.79 6.12 NA 0.00 4.00 4.00 6.67 13.64 8.33 NA NA 0.00 4.88 NA NA 4.11 0.00 17.65 9.52 0.00 9.09 7.14 NA 3.12 5.26 0.00 NA 0.00 3.45 12.50 7.81 9.68 7.55 8.33 0.00 0.00 0.00 0.00 0.00 7.14 N alternative_acceptor CG30193,CG30190 chr2R + chr2R_18815153_18817321 chr2R_18815153_18816610 chr2R_18815039_18815152;chr2R_18817322_18817596 100.00 100.00 100.00 89.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD cul-2,RI_chr2L_21657668_21657832,noncoding_4226,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21657668_21657832;chr2L_21657742_21657832 chr2L_21657777_21657832 chr2L_21657833_21657932;chr2L_21657659_21657667 20.24 28.00 24.14 31.11 34.29 28.95 33.88 25.35 30.09 15.09 21.43 37.74 42.50 23.26 24.59 31.21 35.90 7.69 28.07 21.83 16.67 8.14 10.66 28.99 8.86 17.19 10.32 7.26 9.17 12.40 18.99 9.28 7.46 16.19 7.32 1.32 25.00 18.75 18.67 15.13 5.41 21.51 27.50 16.67 14.43 13.29 20.24 10.62 29.09 17.36 20.00 35.48 31.37 17.58 20.73 21.74 28.00 24.05 K alternative_acceptor casp,EI_chr2R_11914764_11914841 chr2R - chr2R_11914784_11914841;chr2R_11914764_11914841 chr2R_11914769_11914841 chr2R_11914842_11914941;chr2R_11914664_11914763 22.73 18.18 32.26 26.32 13.64 14.81 31.58 29.41 20.00 28.57 35.00 23.81 16.67 20.00 19.23 21.21 28.57 19.23 10.53 20.00 16.67 16.36 33.33 26.09 26.09 27.27 15.62 5.56 35.71 28.12 14.29 22.73 11.76 25.71 22.73 23.81 23.33 25.00 19.23 22.92 29.41 19.61 23.53 24.24 13.04 18.18 23.81 24.53 26.19 16.67 21.74 25.00 25.00 21.43 19.35 21.74 20.00 21.28 K intron_retention CG40045,RI_chr3L_24023955_24028531,RI_chr3L_24023958_24028536,I_chr3L_24024771_24028531,I_chr3L_24025959_24028531,I_chr3L_24028601_24028670 chr3L + chr3L_24024771_24027977 chr3L_24024770_24024771;chr3L_24027977_24027978 chr3L_24024683_24024770;chr3L_24027978_24028118 96.16 NA NA NA NA NA NA NA 88.89 NA NA 100.00 NA NA NA 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA 92.31 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG34348 chrX + chrX_11234779_11237282 chrX_11234779_11237278 chrX_11234640_11234778;chrX_11237283_11237945 100.00 100.00 NA NA NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 98.39 100.00 100.00 100.00 100.00 100.00 NA 97.06 NA NA 96.00 NA NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 97.14 100.00 100.00 100.00 100.00 97.22 NA 100.00 100.00 100.00 97.44 100.00 100.00 K jcn_only_AD I_chr3L_18664773_18665233,GNBP2,I_chr3L_18667579_18667644 chr3L - chr3L_18668078_18668437;chr3L_18668078_18668478 chr3L_18668078_18668318 chr3L_18667645_18668077;chr3L_18668479_18668494 87.69 95.45 91.67 90.14 89.66 80.00 93.10 92.21 85.58 NA 89.66 75.34 74.19 91.43 95.65 95.65 80.00 80.95 90.48 73.40 90.91 88.00 90.00 86.67 78.26 90.32 94.29 NA NA NA 76.79 88.00 81.82 89.23 NA 84.62 80.00 NA 74.19 87.50 NA 82.19 89.19 80.49 86.36 92.31 62.86 94.29 85.94 87.88 85.71 84.00 NA NA 80.00 83.87 95.00 97.22 K jcn_only_AA CG10462 chr2L - chr2L_19734281_19734469;chr2L_19734413_19734469 chr2L_19734410_19734469 chr2L_19734470_19734941;chr2L_19733639_19734280 28.68 26.09 25.35 32.23 27.91 21.05 36.61 28.68 26.74 33.33 22.22 26.32 35.21 28.33 31.25 35.66 22.54 34.85 34.25 25.78 32.56 32.26 24.14 23.19 19.57 28.99 27.27 40.00 25.81 24.07 32.17 31.58 41.00 28.21 21.88 28.95 23.81 23.53 30.88 24.75 29.55 27.34 39.71 22.97 44.00 35.62 36.11 29.79 27.59 26.67 35.14 29.79 35.00 30.91 30.77 27.42 27.17 23.39 K alternative_donor CG8671,I_chr2L_21275807_21277205 chr2L + chr2L_21263124_21263647 chr2L_21263180_21263647 chr2L_21263648_21263786;chr2L_21262988_21263123 15.64 8.33 14.89 13.75 37.50 15.91 18.33 10.87 17.74 NA 10.71 16.13 20.00 12.24 14.58 16.48 24.00 9.09 14.81 16.90 12.00 19.05 13.16 19.05 20.83 24.44 16.22 20.00 28.00 12.00 13.33 16.67 25.00 14.81 16.13 12.90 7.69 33.33 13.04 10.71 35.71 15.19 15.00 18.75 14.29 9.38 NA 20.00 18.75 19.05 12.50 9.09 NA 15.38 10.94 9.09 16.67 26.92 K intron_retention btz,I_chr3R_23526114_23526320 chr3R + chr3R_23526248_23526320 chr3R_23526247_23526248;chr3R_23526320_23526321 chr3R_23526188_23526247;chr3R_23526321_23526420 4.55 NA NA 0.00 NA 0.00 7.14 0.00 21.05 NA NA 3.57 NA NA NA 0.00 NA NA 0.00 6.25 NA 10.42 9.09 14.29 NA NA NA 42.11 19.05 6.67 0.00 0.00 9.09 5.88 5.88 0.00 0.00 0.00 NA 11.11 0.00 8.70 NA 12.50 0.00 0.00 6.25 0.00 5.26 NA 5.26 NA NA 0.00 0.00 3.85 6.67 0.00 K alternative_donor Vha100-1,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24956994_24957407 chr3R_24957170_24957407 chr3R_24957408_24957547;chr3R_24956989_24956993 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention sra,RI_chr3R_12013022_12018544 chr3R + chr3R_12013022_12021752 chr3R_12013021_12013022;chr3R_12021752_12021753 chr3R_12012922_12013021;chr3R_12021753_12023321 7.14 4.26 4.40 8.00 5.95 5.41 21.05 4.88 2.75 5.88 4.72 7.14 5.13 5.88 5.97 7.69 2.67 0.00 6.17 3.80 2.44 13.44 9.93 11.48 20.22 8.22 40.71 38.50 4.72 15.92 23.81 8.54 8.93 4.46 8.05 15.62 5.45 9.24 11.27 6.59 13.14 4.76 9.26 7.59 4.70 8.40 9.20 3.65 5.47 23.08 9.17 12.12 0.00 5.71 6.85 7.27 9.24 1.80 K intron_retention Socs16D chrX - chrX_17716766_17716830 chrX_17716765_17716766;chrX_17716830_17716831 chrX_17716658_17716765;chrX_17716831_17716921 5.26 3.77 0.00 3.92 6.52 0.00 25.71 5.00 4.27 4.17 15.15 5.62 14.71 5.41 6.82 0.00 5.41 4.26 6.00 6.38 9.09 2.27 7.27 9.76 10.34 19.23 8.70 4.35 28.12 5.71 14.00 0.00 0.00 1.25 12.90 29.03 3.03 0.00 5.66 2.94 5.88 5.43 10.53 4.44 0.00 0.00 6.25 4.17 3.66 5.26 6.38 0.00 0.00 0.00 0.00 0.00 7.14 0.00 K intron_retention del chr2L - chr2L_21146886_21146939 chr2L_21146885_21146886;chr2L_21146939_21146940 chr2L_21145134_21146885;chr2L_21146940_21147823 34.88 25.00 27.27 58.33 13.33 38.10 37.50 35.90 37.84 NA 28.57 34.88 29.41 40.00 50.00 45.24 33.33 33.33 48.00 33.33 NA 33.33 44.44 44.44 40.00 36.84 28.57 64.29 50.00 34.62 32.43 NA 40.00 30.77 37.50 40.62 25.93 27.78 30.00 35.48 NA 29.79 41.18 27.59 46.15 40.00 33.33 36.84 40.00 30.77 32.00 30.77 14.29 17.65 35.71 46.67 27.78 33.33 N intron_retention IP3K2,I_chrX_13216481_13219804 chrX + chrX_13213081_13219804 chrX_13213080_13213081;chrX_13219804_13219805 chrX_13212448_13213080;chrX_13219805_13219869 43.75 46.67 NA NA NA NA NA NA 47.06 NA NA NA NA NA NA NA NA NA NA NA NA 39.13 NA 100.00 41.67 NA NA NA NA NA 33.33 NA 44.44 36.36 29.41 66.67 NA NA 30.77 NA 31.25 NA NA NA NA NA 43.75 100.00 47.62 NA 100.00 NA NA NA 40.00 NA NA NA K jcn_only_AA CG14803,CG14805 chrX + chrX_1763276_1763334 chrX_1763276_1763330 chrX_1762927_1763275;chrX_1763335_1763911 100.00 NA 96.43 100.00 96.67 100.00 87.50 100.00 98.08 NA NA 100.00 NA NA 100.00 100.00 NA NA NA 100.00 NA NA 95.45 100.00 NA 100.00 100.00 NA NA 100.00 NA NA 98.11 97.22 NA 95.45 100.00 NA 97.14 100.00 NA 100.00 NA 95.65 93.10 90.00 NA 96.43 100.00 NA NA 96.30 NA NA 100.00 NA 100.00 100.00 K intron_retention CG17255,I_chrX_10359089_10359175,RI_chrX_10366177_10367270 chrX - chrX_10359101_10359175 chrX_10359100_10359101;chrX_10359175_10359176 chrX_10357883_10359100;chrX_10359176_10359275 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.52 1.13 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.20 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.47 0.00 0.69 0.00 K jcn_only_AD F_chrX_15764251_15765393,CG16952,RI_chrX_15764587_15765393,I_chrX_15766003_15766047 chrX + chrX_15764522_15765393;chrX_15764247_15765393;chrX_15764620_15765393;chrX_15764599_15765393 chrX_15764432_15765393 chrX_15765394_15765493;chrX_15764236_15764246 29.70 NA NA 28.00 NA NA 35.00 30.00 37.50 NA NA NA NA NA NA 27.27 NA NA 15.00 21.74 NA NA NA NA NA NA NA NA NA NA NA NA NA 29.41 NA NA NA NA NA NA NA 40.62 NA NA NA NA NA NA 52.63 NA NA NA NA NA NA NA NA NA K alternative_donor rdgB chrX + chrX_13666690_13666818 chrX_13666729_13666818 chrX_13666819_13667786;chrX_13666591_13666689 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 96.15 NA 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 NA NA 91.67 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 NA K intron_retention CG32425,I_chr3L_20490581_20505036,CG18281,CG17637,CG5078,I_chr3L_20502617_20503129,I_chr3L_20503880_20503985,I_chr3L_20504930_20505036 chr3L + chr3L_20490526_20505036 chr3L_20490525_20490526;chr3L_20505036_20505037 chr3L_20490481_20490525;chr3L_20505037_20505136 51.66 NA NA NA NA NA NA NA 56.25 NA NA NA NA NA NA 75.00 NA NA NA 60.00 NA 35.29 50.00 50.00 NA NA NA NA NA NA 77.78 NA NA 58.33 NA NA 30.77 NA NA 28.57 NA 53.33 NA NA NA NA NA 25.00 53.33 50.00 NA NA NA NA NA NA NA NA K multi_cassette CG18659,E_chr2R_5011363_5019110,RI_chr2R_5013572_5014531,I_chr2R_5016147_5016997 chr2R - chr2R_5011651_5014531 chr2R_5011651_5012248;chr2R_5012726_5013055;chr2R_5013572_5014531 chr2R_5012249_5012725;chr2R_5013056_5013571 chr2R_5011194_5011650;chr2R_5014532_5014631 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.07 100.00 100.00 100.00 100.00 100.00 100.00 98.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG15118,I_chr2R_15024324_15024455 chr2R - chr2R_15021937_15022387 chr2R_15022232_15022387 chr2R_15022388_15023130;chr2R_15021232_15021936 0.00 0.00 0.00 1.23 0.00 0.00 1.75 0.00 0.00 4.76 0.00 3.45 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 2.65 1.96 3.54 1.79 0.00 0.00 0.00 5.26 0.00 0.00 1.08 1.39 0.00 1.52 1.27 0.00 0.00 0.83 0.00 0.91 1.71 0.00 1.30 0.87 1.09 0.00 2.38 0.00 0.00 0.00 1.82 5.48 1.23 0.00 0.00 0.76 2.94 K cassette flfl,EI_chr3R_9513221_9513291,CG14367 chr3R + chr3R_9509873_9513291 chr3R_9509873_9510146;chr3R_9510247_9513291 chr3R_9510147_9510246 chr3R_9509647_9509872;chr3R_9513292_9513391 1.96 0.00 0.00 1.23 0.00 2.70 2.13 2.67 2.33 2.44 0.00 5.00 2.38 0.00 5.00 2.94 0.00 0.00 1.79 6.78 5.41 0.00 3.92 0.00 0.00 5.00 0.00 0.00 3.85 0.00 0.00 NA 0.00 4.84 3.85 4.35 0.00 0.00 0.00 2.33 0.00 3.85 3.45 0.00 5.88 5.00 14.29 2.33 1.45 0.00 2.78 0.00 4.55 NA 3.03 0.00 NA 0.00 K jcn_only_AD Hydr2,RI_chr2L_3164075_3164159 chr2L + chr2L_3167140_3167203 chr2L_3167146_3167203 chr2L_3167204_3167558;chr2L_3166970_3167139 0.37 0.47 0.85 0.18 1.05 0.69 0.43 0.33 0.48 0.34 0.00 0.00 0.62 0.32 0.20 0.21 0.57 0.28 0.00 0.12 0.00 0.70 0.00 0.49 0.32 0.80 0.39 0.58 0.31 0.92 0.28 0.42 0.97 0.45 0.00 0.77 0.46 0.00 0.60 0.37 0.00 0.98 0.77 0.66 0.25 0.00 0.57 0.48 0.32 0.73 0.48 0.80 0.00 0.37 0.22 0.29 0.23 0.34 K jcn_only_AD CG11247,I_chr3L_21718596_21718659 chr3L - chr3L_21718596_21718659 chr3L_21718596_21718654 chr3L_21718496_21718595;chr3L_21718660_21718759 100.00 100.00 100.00 97.96 100.00 97.92 100.00 98.75 100.00 100.00 100.00 97.78 100.00 100.00 100.00 100.00 97.50 100.00 100.00 97.85 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 96.88 100.00 97.83 100.00 100.00 96.55 100.00 98.31 100.00 100.00 97.12 96.97 98.98 97.06 100.00 100.00 98.31 100.00 98.36 100.00 100.00 97.56 96.30 94.29 100.00 100.00 100.00 100.00 97.06 K intron_retention ph-p,I_chrX_2025760_2030488,I_chrX_2025760_2030587 chrX - chrX_2025760_2030498 chrX_2025759_2025760;chrX_2030498_2030499 chrX_2025660_2025759;chrX_2030499_2030588 90.00 NA NA 87.50 NA NA NA 90.00 78.57 NA NA NA NA NA NA NA NA NA NA 90.91 NA 81.25 NA NA NA NA NA NA NA 87.50 NA NA 90.00 NA NA NA NA NA NA 92.86 NA 90.91 NA NA NA NA NA 90.91 90.00 NA 87.50 NA NA NA NA NA NA NA K jcn_only_AA rgr,I_chr2R_4488735_4489955 chr2R + chr2R_4496027_4496559 chr2R_4496027_4496554 chr2R_4495817_4496026;chr2R_4496560_4496899 98.11 97.78 100.00 100.00 100.00 100.00 100.00 94.59 98.28 100.00 100.00 96.47 95.00 100.00 100.00 100.00 92.00 96.00 100.00 96.97 100.00 98.06 96.74 98.51 97.30 97.50 95.59 98.44 96.97 98.33 95.56 100.00 97.09 100.00 97.30 100.00 97.40 98.11 97.94 97.33 94.94 98.39 100.00 98.46 94.32 97.44 97.47 97.00 95.71 98.51 98.73 98.11 95.24 97.14 100.00 98.15 97.37 100.00 K jcn_only_AD CG17883,I_chr2R_560147_560511,I_chr2R_560547_560618 chr2R + chr2R_560568_560618;chr2R_560147_560618;chr2R_560565_560618 chr2R_560547_560618 chr2R_560619_560642;chr2R_560047_560146 4.00 3.33 3.12 NA 4.00 0.00 1.09 1.52 4.76 NA 3.57 1.96 0.00 11.11 0.00 3.85 4.44 11.54 2.63 5.88 0.00 11.11 15.62 0.00 18.18 NA 0.00 0.00 NA 10.00 3.85 5.00 17.39 4.05 4.17 NA NA NA 0.00 9.76 NA 0.00 8.33 0.00 9.52 2.50 6.25 NA 4.35 0.00 3.85 4.00 6.45 6.67 5.88 10.26 2.04 6.38 K alternative_donor CG6597 chr3L + chr3L_20295603_20296166;chr3L_20295972_20296166 chr3L_20295938_20296166 chr3L_20296167_20296215;chr3L_20295573_20295602 7.14 11.11 6.25 3.57 0.00 NA 6.90 3.45 2.50 NA 10.00 11.11 0.00 0.00 4.35 0.00 0.00 7.69 0.00 3.12 7.14 11.76 7.69 6.25 9.09 6.67 11.11 NA 12.50 22.22 5.56 11.11 11.11 8.00 12.50 22.22 9.09 NA 20.00 7.41 10.00 4.17 4.76 6.67 5.88 10.00 18.18 6.25 8.82 0.00 10.00 0.00 10.00 NA 5.88 12.50 7.14 3.33 K jcn_only_AA CG6845,I_chr3L_148414_148465,I_chr3L_148414_148475,I_chr3L_148414_148489 chr3L + chr3L_148414_148465;chr3L_148414_148475;chr3L_148414_148461 chr3L_148414_148489 chr3L_148350_148413;chr3L_148490_148555 0.00 0.00 0.00 3.61 0.00 5.56 1.89 0.00 0.87 4.55 0.00 0.00 0.00 2.17 0.00 1.85 0.00 0.00 0.00 1.11 3.57 0.00 0.00 3.23 NA 0.00 NA NA 0.00 0.00 3.41 NA 0.00 2.22 0.00 NA 0.00 0.00 0.00 2.13 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.45 0.00 NA NA 1.37 0.00 3.23 0.00 K intron_retention CG32850,noncoding_20650,I_chr4_338996_340074,I_chr4_340294_340373,RI_chr4_340294_340597 chr4 + chr4_340294_340381 chr4_340293_340294;chr4_340381_340382 chr4_340194_340293;chr4_340382_340402 100.00 100.00 100.00 98.25 100.00 95.24 97.62 100.00 100.00 NA 94.44 98.33 95.65 96.67 96.77 100.00 100.00 100.00 97.22 98.46 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.25 100.00 94.12 100.00 92.86 100.00 100.00 100.00 97.96 100.00 100.00 94.74 97.37 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 97.50 100.00 95.83 100.00 K jcn_only_AA Flo,I_chr2R_11456012_11456623 chr2R - chr2R_11454673_11454747 chr2R_11454678_11454747 chr2R_11454748_11454816;chr2R_11454609_11454672 100.00 99.52 100.00 100.00 100.00 99.38 100.00 100.00 100.00 99.06 100.00 99.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.88 100.00 100.00 100.00 100.00 100.00 99.36 100.00 100.00 100.00 98.96 100.00 99.67 100.00 100.00 100.00 100.00 100.00 99.66 100.00 100.00 99.47 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908142_9908424,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907784_9908424;chr2L_9907784_9908531;chr2L_9907784_9908307 chr2L_9907784_9908405 chr2L_9907756_9907783;chr2L_9908532_9908619 3.57 0.00 4.26 5.19 2.63 3.57 2.99 3.70 3.07 NA 0.00 7.00 8.70 3.12 2.08 4.04 1.52 7.69 6.17 5.22 2.56 0.87 3.54 1.35 3.77 5.36 3.26 2.94 3.57 1.41 1.85 0.00 2.82 4.17 2.99 2.04 3.75 4.84 5.80 3.92 5.71 4.03 9.76 8.24 3.33 6.35 1.82 3.12 5.05 3.70 5.38 4.00 1.96 2.86 2.44 6.12 5.71 2.00 K alternative_donor caz,noncoding_24110,RI_chrX_16183147_16183258,RI_chrX_16183356_16185973 chrX + chrX_16183147_16183258 chrX_16183192_16183258 chrX_16183259_16183355;chrX_16183060_16183146 98.86 97.48 96.19 94.95 98.91 100.00 98.86 97.93 98.26 99.14 95.71 98.49 98.48 98.96 96.77 100.00 100.00 99.07 100.00 98.82 97.44 100.00 99.61 98.30 98.54 98.70 97.11 94.49 96.25 98.72 99.50 99.16 98.88 98.95 100.00 97.44 99.03 99.54 98.50 99.03 100.00 98.86 98.85 99.29 98.82 98.48 99.44 100.00 99.59 98.16 98.25 97.93 99.30 99.35 99.29 97.69 98.07 99.50 K alternative_acceptor east,CR_chrX_1912038_1912737 chrX + chrX_1913540_1913603 chrX_1913540_1913600 chrX_1913091_1913539;chrX_1913604_1913770 44.74 47.06 40.54 55.81 39.29 40.54 48.84 62.50 44.83 45.83 40.74 40.00 45.00 35.90 42.55 41.18 54.84 45.95 41.67 44.74 48.15 38.24 43.10 47.83 31.25 33.33 48.48 35.71 32.00 44.83 38.30 56.25 42.86 45.45 40.00 37.04 50.00 47.37 47.06 38.64 46.15 51.43 56.25 52.27 50.00 34.62 40.74 41.67 57.38 50.00 40.48 41.38 44.00 46.15 47.50 48.28 31.58 35.48 K alternative_donor CG3680,Pka-R1 chr3L + chr3L_20805565_20805623 chr3L_20805568_20805623 chr3L_20805624_20805770;chr3L_20805357_20805564 93.94 92.86 83.33 90.48 93.75 93.33 92.00 96.67 93.75 80.00 100.00 96.77 100.00 73.33 100.00 95.24 92.31 100.00 94.44 96.43 94.12 92.31 82.35 93.33 100.00 95.00 95.24 93.33 100.00 91.67 90.91 NA 100.00 96.15 90.91 100.00 95.45 92.31 95.24 96.00 100.00 92.59 90.00 94.74 93.33 92.31 90.00 100.00 89.66 100.00 95.24 78.57 90.91 90.00 94.44 94.12 100.00 91.67 K jcn_only_AD twin,RI_chr3R_20032242_20045321 chr3R - chr3R_20046286_20047514;chr3R_20046286_20047526 chr3R_20046286_20047530 chr3R_20046254_20046285;chr3R_20047531_20047647 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 3.12 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K cassette SPoCk,I_chr3L_22776339_22776519,I_chr3L_22777865_22778359 chr3L + chr3L_22766817_22770210 chr3L_22766817_22768414;chr3L_22768472_22770210 chr3L_22768415_22768471 chr3L_22766783_22766816;chr3L_22770211_22771924 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA NA K jcn_only_AA aPKC,I_chr2R_10833552_10833654,RI_chr2R_10849347_10850391 chr2R - chr2R_10833552_10833654;chr2R_10833596_10833654 chr2R_10832733_10833654 chr2R_10833655_10833754;chr2R_10832714_10832732 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 3.33 NA 0.00 NA 0.00 0.00 0.00 2.04 2.27 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 K alternative_donor alpha-Man-I,I_chrX_10218352_10219759,I_chrX_10218390_10219759 chrX - chrX_10218352_10219846;chrX_10218352_10219816;chrX_10218352_10219759;chrX_10218352_10219665;chrX_10218352_10219823;chrX_10218352_10219708 chrX_10218352_10219918 chrX_10218290_10218351;chrX_10219919_10219979 0.00 0.00 0.00 7.69 0.00 0.00 0.00 5.88 5.26 0.00 0.00 0.00 NA 0.00 0.00 4.76 0.00 0.00 0.00 7.14 0.00 22.22 0.00 0.00 0.00 0.00 0.00 NA NA 11.11 0.00 NA 0.00 0.00 NA 0.00 0.00 14.29 NA 0.00 0.00 7.69 0.00 16.67 NA 20.00 NA 11.11 0.00 0.00 10.00 12.50 0.00 NA 11.11 0.00 20.00 0.00 K intron_retention CG5522 chr2R + chr2R_12675766_12675830 chr2R_12675765_12675766;chr2R_12675830_12675831 chr2R_12675660_12675765;chr2R_12675831_12676171 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 1.82 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Ranbp16,I_chrX_15826655_15827277 chrX - chrX_15827572_15827638 chrX_15827572_15827633 chrX_15827176_15827571;chrX_15827639_15827691 100.00 90.91 91.67 90.48 100.00 90.00 92.00 100.00 97.14 100.00 88.89 100.00 88.89 90.00 84.62 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 NA NA 100.00 100.00 NA 91.67 100.00 100.00 NA 100.00 95.83 NA NA 100.00 NA 100.00 96.00 NA 96.30 100.00 93.33 NA 100.00 NA 100.00 95.45 NA 100.00 NA NA NA 100.00 NA NA NA K jcn_only_AD rut,I_chrX_14718760_14718821 chrX - chrX_14718961_14719994 chrX_14718961_14719778 chrX_14718822_14718960;chrX_14719995_14720063 38.10 NA NA NA NA NA NA NA 38.10 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor MB8.chr3R.pasa.66,ref1,RI_chr3R_2904130_2904237,RI_chr3R_2904305_2904543,I_chr3R_2904452_2904543 chr3R - chr3R_2904130_2904543 chr3R_2904130_2904237 chr3R_2904030_2904129;chr3R_2904544_2904643 3.51 2.90 3.03 7.80 3.70 3.57 5.34 4.58 3.54 2.50 4.95 3.56 6.49 4.30 2.55 10.53 2.97 3.67 6.02 3.17 3.39 11.70 2.64 1.85 2.81 5.26 7.09 6.59 4.39 6.67 3.15 4.84 4.72 5.30 3.55 2.66 2.06 1.93 1.33 2.63 4.35 3.15 4.94 2.38 2.66 1.38 1.77 3.55 4.10 3.59 3.51 3.28 1.21 2.13 2.70 2.44 1.10 2.13 K intron_retention RpL10Ab chr3L + chr3L_11816666_11816757 chr3L_11816665_11816666;chr3L_11816757_11816758 chr3L_11816300_11816665;chr3L_11816758_11817314 12.68 11.54 19.61 12.68 13.33 15.00 6.94 17.95 15.22 22.86 9.52 16.19 14.89 20.37 15.52 13.70 18.92 16.33 9.62 11.65 12.20 6.67 10.75 11.11 7.55 8.89 13.48 19.28 13.33 10.87 1.76 17.39 15.62 13.89 8.06 8.77 18.64 12.96 10.67 14.52 10.53 12.15 13.51 16.00 11.36 11.11 10.09 16.67 11.94 11.49 6.29 12.24 8.14 5.10 14.00 9.64 14.15 23.33 K multi_cassette Asator chr4 - chr4_495395_497917 chr4_495395_495647;chr4_495731_497588;chr4_497729_497917 chr4_495648_495730;chr4_497589_497728 chr4_495385_495394;chr4_497918_497940 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Ac78C,F_chr3L_21141024_21153737 chr3L - chr3L_21140529_21140594 chr3L_21140528_21140529;chr3L_21140594_21140595 chr3L_21140234_21140528;chr3L_21140595_21141033 17.07 NA NA 43.75 NA NA NA 15.38 38.46 NA NA 18.75 NA NA NA NA NA NA NA 11.76 NA 12.50 NA NA NA NA NA NA NA 13.04 NA NA 18.75 NA NA NA 25.00 NA NA 14.29 NA 20.00 NA 0.00 NA NA NA 9.38 30.77 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG5854,RI_chr3R_19760655_19760703 chr3R + chr3R_19759783_19759892 chr3R_19759783_19759854 chr3R_19759718_19759782;chr3R_19759893_19760066 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.53 0.35 0.00 0.00 0.00 1.80 0.00 0.00 1.03 0.00 0.65 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.88 0.33 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 K alternative_acceptor CG9171,I_chr2L_5770886_5770950,I_chr2L_5771210_5773014,RI_chr2L_5792418_5799117,I_chr2L_5799412_5800043 chr2L - chr2L_5770886_5770950 chr2L_5770889_5770950 chr2L_5770951_5771050;chr2L_5770786_5770885 78.95 78.95 78.57 100.00 NA 64.29 83.33 73.91 83.33 90.91 84.62 80.65 91.67 92.86 68.18 76.47 81.82 66.67 61.54 82.93 69.23 69.23 77.14 88.24 69.23 78.57 75.00 75.00 73.33 72.73 73.33 63.64 76.47 65.38 68.75 80.00 87.10 75.00 85.71 86.49 NA 85.19 100.00 78.95 NA 81.25 81.25 79.07 67.86 87.50 89.47 86.67 89.47 71.43 86.36 91.67 75.00 68.18 K intron_retention Dab chr3L + chr3L_16707421_16708540 chr3L_16707420_16707421;chr3L_16708540_16708541 chr3L_16706966_16707420;chr3L_16708541_16708611 16.80 18.75 16.67 8.70 NA 16.13 33.33 24.32 24.39 13.04 7.69 10.53 NA 17.39 14.81 14.29 20.00 8.33 30.43 36.59 12.50 16.28 14.29 15.79 6.67 20.00 25.00 NA 14.29 15.15 19.05 36.84 26.83 8.11 23.53 14.29 13.33 14.29 12.50 12.50 47.06 19.61 20.00 21.05 26.32 22.22 35.71 16.92 10.64 NA 9.52 NA 28.57 NA 12.90 NA 66.67 28.12 K intron_retention sol chrX + chrX_21228001_21228071 chrX_21228000_21228001;chrX_21228071_21228072 chrX_21227734_21228000;chrX_21228072_21228214 0.00 0.00 0.00 3.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.13 0.00 2.12 0.82 0.00 0.00 0.00 2.50 7.27 0.58 0.00 0.00 0.00 0.00 0.00 0.00 1.89 1.03 0.00 0.00 0.57 1.61 1.08 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 1.00 0.00 0.00 K intron_retention hkl chr2L + chr2L_19046143_19046206 chr2L_19046142_19046143;chr2L_19046206_19046207 chr2L_19045522_19046142;chr2L_19046207_19047047 85.71 89.47 83.78 93.51 96.43 88.57 93.22 88.46 85.71 85.00 75.00 93.24 78.79 85.00 97.83 88.71 92.11 81.58 91.84 86.46 83.33 46.88 81.94 83.64 86.21 92.11 92.98 89.66 85.71 70.21 73.08 88.24 86.96 87.50 80.00 85.71 83.67 82.05 85.37 77.42 88.89 88.61 87.88 78.26 78.95 88.24 86.54 78.95 88.31 73.33 88.14 73.68 83.72 83.33 86.00 85.71 85.71 70.49 K jcn_only_AD cnc,I_chr3R_19014852_19016738,I_chr3R_19046366_19046507,I_chr3R_19046619_19047567 chr3R - chr3R_19046366_19046507;chr3R_19046366_19047567 chr3R_19046366_19047563 chr3R_19046266_19046365;chr3R_19047568_19047667 47.73 NA NA 45.00 NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 45.45 NA NA NA NA NA NA NA NA 50.00 NA 54.55 NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA K intron_retention CG30392,CG30390 chr2R - chr2R_17179087_17179146 chr2R_17179086_17179087;chr2R_17179146_17179147 chr2R_17178537_17179086;chr2R_17179147_17179364 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_150069_150307;chr4_150069_150180;chr4_150069_150353;chr4_150069_150295;chr4_150069_150205 chr4_150069_150378 chr4_149969_150068;chr4_150379_150379 0.00 NA 33.33 0.00 0.00 0.00 5.00 5.88 0.00 NA 0.00 0.00 0.00 0.00 0.00 9.09 0.00 25.00 0.00 0.00 NA NA NA NA NA 16.67 NA NA NA NA 0.00 NA NA 6.67 NA NA NA NA NA NA NA 8.33 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K intron_retention Ect4,I_chr3L_8075556_8086158,C_chr3L_8091754_8101552,I_chr3L_8091826_8092243,I_chr3L_8098397_8101385,I_chr3L_8098758_8101738,I_chr3L_8100030_8101385 chr3L + chr3L_8098397_8098539 chr3L_8098396_8098397;chr3L_8098539_8098540 chr3L_8098297_8098396;chr3L_8098540_8098757 24.63 26.52 17.33 34.36 26.27 20.17 31.90 29.95 24.58 29.33 32.18 20.70 30.99 22.33 30.08 24.31 33.61 22.73 35.25 18.18 24.53 36.36 20.97 27.68 26.42 34.78 43.84 44.55 28.92 22.00 24.24 29.47 24.63 24.26 26.42 39.86 19.90 21.77 21.82 27.80 23.85 24.12 29.47 30.43 14.60 25.77 17.65 25.26 26.58 23.14 21.16 25.51 16.13 24.14 24.63 23.21 20.00 16.88 K intron_retention X11L,RE_chrX_17497873_17498103 chrX + chrX_17497869_17498103 chrX_17497868_17497869;chrX_17498103_17498104 chrX_17497773_17497868;chrX_17498104_17498203 0.00 0.00 0.00 3.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 2.53 2.35 2.27 0.96 0.00 1.54 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 K jcn_only_AA CG10874 chr2L - chr2L_2190644_2190706 chr2L_2190647_2190706 chr2L_2190707_2190784;chr2L_2189869_2190643 16.00 16.87 17.19 11.54 25.86 16.33 20.73 19.05 12.38 13.64 23.53 16.84 13.89 12.50 12.00 20.97 15.69 17.19 16.00 15.79 5.36 16.16 20.95 13.68 18.97 15.62 17.44 16.00 20.00 20.00 12.68 9.52 15.00 18.75 22.03 15.87 15.89 15.19 16.46 10.29 10.42 13.01 7.41 14.06 26.32 15.71 21.62 24.14 19.05 11.86 14.95 16.36 21.62 17.78 13.85 12.82 16.54 10.20 K jcn_only_AD MB8.chr3R.pasa.66,Alh,I_chr3R_2924206_2924272,I_chr3R_2927820_2933442,RI_chr3R_2946518_2946663 chr3R - chr3R_2924206_2924276 chr3R_2924206_2924272 chr3R_2924106_2924205;chr3R_2924277_2924372 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.33 0.00 NA NA 2.08 NA NA 19.23 NA NA 0.00 NA 0.00 NA 0.00 2.44 3.85 NA NA 3.12 NA NA NA NA NA 4.55 7.14 NA NA 3.33 0.00 2.27 2.94 NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 3.03 0.00 6.45 0.00 K alternative_acceptor CG32016,I_chr4_972691_972763,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_972704_972763;chr4_972691_972763 chr4_972719_972763 chr4_972764_972863;chr4_972619_972690 3.77 4.17 3.57 11.90 0.00 5.88 4.88 4.17 3.23 0.00 4.76 4.26 3.23 7.41 4.00 8.33 3.70 4.35 6.06 3.39 0.00 0.00 5.41 2.78 0.00 11.76 5.56 14.29 0.00 0.00 3.33 0.00 9.09 5.26 5.26 0.00 0.00 4.35 0.00 3.12 7.69 4.00 5.56 3.85 0.00 4.35 0.00 7.14 3.77 2.63 6.25 0.00 0.00 0.00 3.12 0.00 2.70 4.55 K cassette Pino,I_chr2L_1115944_1117443,I_chr2L_1116691_1116908,I_chr2L_1117918_1118565 chr2L - chr2L_1115944_1117443 chr2L_1115944_1116440;chr2L_1116691_1117443 chr2L_1116441_1116690 chr2L_1115844_1115943;chr2L_1117444_1117516 100.00 100.00 100.00 98.63 98.96 100.00 100.00 100.00 100.00 99.06 100.00 100.00 100.00 100.00 100.00 100.00 98.57 100.00 100.00 100.00 100.00 97.88 100.00 99.45 99.19 98.73 99.35 100.00 99.14 99.19 98.91 100.00 100.00 100.00 98.29 100.00 99.69 99.46 100.00 100.00 98.31 100.00 100.00 100.00 99.08 100.00 100.00 100.00 99.46 100.00 99.45 100.00 100.00 99.24 100.00 100.00 100.00 100.00 K alternative_donor ssp3 chr2L - chr2L_18942959_18943282 chr2L_18942959_18943276 chr2L_18940688_18942958;chr2L_18943283_18943901 88.19 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA 88.89 NA NA 75.00 NA NA NA NA NA NA NA K alternative_acceptor pcx,fs(1)K10 chrX + chrX_2119897_2119950 chrX_2119897_2119938 chrX_2119744_2119896;chrX_2119951_2120260 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 1.92 0.00 3.33 1.49 3.45 0.00 2.04 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 2.44 2.38 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.70 0.00 2.20 0.00 0.00 2.08 NA 1.37 0.00 0.00 NA NA NA 0.00 1.54 NA 2.13 0.00 NA NA 2.27 NA NA NA K jcn_only_AD RpL27,I_chr3R_21510239_21510298,RI_chr3R_21510239_21510441,I_chr3R_21510239_21510464,I_chr3R_21510239_21510656,I_chr3R_21510239_21510726 chr3R - chr3R_21510239_21510464;chr3R_21510239_21510656;chr3R_21510239_21510680;chr3R_21510239_21510298;chr3R_21510239_21510746 chr3R_21510239_21510739 chr3R_21510139_21510238;chr3R_21510747_21510756 14.55 10.34 13.33 13.86 8.16 20.83 11.11 11.29 11.24 21.82 8.33 22.86 21.43 20.83 8.65 17.07 10.64 8.89 12.09 25.26 16.67 27.50 15.22 13.04 12.20 8.86 13.04 16.18 20.31 42.59 6.67 31.34 35.79 11.93 16.67 25.71 18.31 11.11 17.86 28.83 35.21 12.26 10.42 28.57 23.60 29.58 18.00 29.03 17.92 14.55 7.69 13.95 8.26 4.76 7.80 13.46 9.00 29.51 K jcn_only_AD Elp3 chr2L + chr2L_4444833_4444894 chr2L_4444837_4444894 chr2L_4444895_4444963;chr2L_4444769_4444832 0.73 0.00 0.00 2.00 4.76 0.00 2.50 2.50 0.00 NA 0.00 4.44 4.35 NA 3.12 0.00 NA 0.00 NA 1.47 0.00 6.67 4.08 4.35 NA 0.00 4.55 NA NA 0.00 9.52 NA 0.00 4.17 NA NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 8.33 NA 3.77 0.00 3.03 7.69 3.70 NA 4.00 13.79 0.00 0.00 K jcn_only_AD rhea,E_chr3L_8554660_8564426,I_chr3L_8556289_8556981,I_chr3L_8563622_8564067 chr3L + chr3L_8556735_8557078 chr3L_8557008_8557078 chr3L_8557079_8557081;chr3L_8556646_8556734 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 NA 0.00 1.96 NA 0.00 0.00 2.27 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA NA NA K intron_retention Vha100-1,I_chr3R_24958227_24960770,RI_chr3R_24959152_24959582,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24958227_24960770 chr3R_24958226_24958227;chr3R_24960770_24960771 chr3R_24958127_24958226;chr3R_24960771_24960870 43.75 NA NA 63.64 NA NA 66.67 NA 69.23 NA NA NA NA NA NA NA NA NA NA NA NA 36.00 52.63 NA 36.36 NA 25.00 NA NA NA 9.52 NA NA 63.64 NA NA 21.43 NA 30.77 25.00 NA 46.15 NA 60.00 NA NA NA NA NA NA 43.75 NA NA NA NA NA NA NA K intron_retention Scamp,I_chrX_15342614_15342891,I_chrX_15343542_15343655 chrX - chrX_15342058_15342411 chrX_15342057_15342058;chrX_15342411_15342412 chrX_15341928_15342057;chrX_15342412_15342613 0.88 1.75 0.00 2.42 0.00 0.00 1.32 0.00 0.88 2.67 0.00 1.38 0.00 0.00 2.02 1.39 0.00 0.00 0.95 0.67 0.00 3.54 1.82 2.94 0.00 0.00 1.10 0.00 0.00 0.93 0.00 3.17 1.89 1.32 0.00 0.00 0.78 3.33 1.67 1.18 0.00 0.86 0.00 1.63 0.00 0.00 1.11 1.00 2.72 5.05 1.79 4.41 0.00 0.00 0.00 1.04 4.63 0.00 K alternative_donor Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4833364_4834454;chrX_4833234_4834454;chrX_4833308_4834454;chrX_4833338_4834454 chrX_4833203_4834454 chrX_4834455_4834880;chrX_4833197_4833202 2.63 0.00 14.29 6.67 0.00 NA 0.00 0.00 8.82 12.50 NA 13.33 0.00 0.00 0.00 8.33 9.09 0.00 7.14 10.00 NA 44.44 NA NA NA NA NA NA NA 11.11 0.00 NA 11.11 5.26 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA NA NA NA 0.00 5.56 NA NA NA NA NA 12.50 NA NA NA K intron_retention shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9785143,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9770053_9788941 chr2R_9770052_9770053;chr2R_9788941_9788942 chr2R_9769906_9770052;chr2R_9788942_9789041 4.08 7.69 0.00 12.20 0.00 0.00 3.64 9.09 6.25 8.00 0.00 4.48 NA 7.14 4.35 4.08 4.26 0.00 9.09 5.26 0.00 3.45 4.65 0.00 5.88 0.00 0.00 NA 0.00 6.45 7.69 NA 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 NA 7.55 4.76 4.55 NA NA NA 5.71 15.15 NA 0.00 NA NA NA 3.33 NA NA NA K cassette CG17370,RI_chr3R_21707998_21710705,RI_chr3R_21714780_21715376 chr3R + chr3R_21707998_21711103 chr3R_21707998_21710840;chr3R_21711042_21711103 chr3R_21710841_21711041 chr3R_21707898_21707997;chr3R_21711104_21711551 7.69 10.71 10.71 10.71 3.45 7.41 10.00 6.12 9.33 5.56 7.41 8.33 8.70 5.26 13.79 3.77 8.00 13.64 6.67 10.34 5.56 13.33 5.56 8.89 8.70 16.67 5.17 17.24 7.89 14.29 6.90 4.00 12.00 8.33 3.45 10.53 6.78 7.69 5.71 4.17 10.00 6.15 14.29 5.00 10.53 4.65 7.14 3.03 13.46 6.67 11.11 6.67 7.69 7.14 5.71 5.56 18.75 3.45 K jcn_only_AA CG7556,I_chrX_19072966_19073032 chrX - chrX_19072281_19073032 chrX_19072966_19073032 chrX_19073033_19073132;chrX_19072073_19072280 0.00 0.58 0.00 0.00 0.81 0.76 0.00 0.00 0.86 0.00 0.97 0.00 0.00 0.98 0.00 0.95 0.00 0.00 0.00 0.00 0.78 0.00 0.84 0.00 0.00 0.00 0.00 0.61 0.00 1.04 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 2.23 0.00 0.00 0.00 0.00 0.00 0.50 0.62 K cassette lig,I_chr2R_3960977_3961116,I_chr2R_3960977_3961119,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3960284_3961104;chr2R_3960740_3961104 chr2R_3960284_3960871,chr2R_3960740_3960871;chr2R_3960977_3961104 chr2R_3960872_3960976 chr2R_3959868_3960283;chr2R_3961105_3961205 92.89 95.16 93.86 97.60 96.46 94.97 91.43 96.17 92.14 89.96 91.00 95.13 94.81 92.90 93.47 94.81 95.03 91.62 84.86 91.62 89.01 91.04 94.66 94.92 91.13 85.15 90.69 94.50 85.60 92.63 92.54 93.26 89.44 94.83 92.13 87.54 94.30 95.31 93.09 93.66 86.46 91.53 94.58 95.58 88.46 91.22 93.82 89.26 92.33 96.96 94.32 94.81 91.50 92.57 92.89 92.92 91.73 90.12 K intron_retention E2f,I_chr3R_17452573_17458606,R_chr3R_17452574_17485937,CG6353 chr3R - chr3R_17452573_17457854 chr3R_17452572_17452573;chr3R_17457854_17457855 chr3R_17452474_17452572;chr3R_17457855_17457956 0.00 0.00 0.00 1.23 0.00 0.00 1.94 0.91 0.00 0.00 0.00 1.12 0.00 0.00 0.00 1.38 0.00 0.00 3.08 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 2.82 1.83 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention sima,I_chr3R_25908044_25935016,F_chr3R_25908044_25945850,noncoding_20087 chr3R + chr3R_25925641_25929824 chr3R_25925640_25925641;chr3R_25929824_25929825 chr3R_25925377_25925640;chr3R_25929825_25929970 16.67 NA 13.33 29.03 NA NA 28.57 12.50 28.57 NA NA 27.59 25.00 20.00 NA 36.00 NA NA NA 16.67 25.00 15.38 8.00 NA NA NA NA NA NA NA 16.67 NA 0.00 33.33 NA 14.29 NA NA NA NA NA 16.67 NA NA NA NA NA 0.00 21.43 0.00 6.67 NA NA NA 26.67 NA NA NA K intron_retention CG31689,I_chr2L_2730373_2736310,I_chr2L_2730470_2736310,RI_chr2L_2736137_2736310,I_chr2L_2736230_2736310,I_chr2L_2736431_2737036 chr2L + chr2L_2730373_2736173 chr2L_2730372_2730373;chr2L_2736173_2736174 chr2L_2730370_2730372;chr2L_2736174_2736229 47.22 28.57 60.00 41.38 61.54 47.37 41.18 36.11 52.54 NA 53.33 41.67 50.00 58.62 50.00 48.94 32.00 61.11 46.88 60.53 50.00 53.85 41.86 43.48 52.63 42.86 37.50 53.33 33.33 51.85 56.00 NA 58.33 42.31 42.86 45.83 47.06 42.86 52.94 29.03 46.15 47.37 34.78 50.00 NA 27.27 54.55 50.00 51.22 29.17 43.33 47.83 35.71 41.67 37.50 36.84 50.00 50.00 K intron_retention CG8709,I_chr2R_4026143_4026205,I_chr2R_4027128_4027182,I_chr2R_4027682_4027747,RI_chr2R_4029534_4029599,I_chr2R_4030580_4030746,I_chr2R_4035901_4043493 chr2R - chr2R_4025188_4026442 chr2R_4025187_4025188;chr2R_4026442_4026443 chr2R_4024824_4025187;chr2R_4026443_4026546 2.25 0.00 0.00 1.98 2.70 1.32 4.55 2.04 2.20 1.47 0.00 3.42 1.61 3.85 4.60 4.76 1.59 2.53 2.30 1.37 0.00 3.39 2.55 1.35 2.25 2.41 3.31 6.06 2.86 1.79 0.00 2.44 2.86 4.21 0.00 5.41 1.59 0.88 3.68 2.48 3.37 1.92 3.03 2.56 2.63 1.53 2.15 1.79 3.03 1.41 2.21 4.23 0.00 0.00 3.57 1.87 1.74 4.39 K intron_retention CG6650,I_chr3L_14026788_14026844 chr3L + chr3L_14026784_14026844 chr3L_14026783_14026784;chr3L_14026844_14026845 chr3L_14026688_14026783;chr3L_14026845_14026944 0.00 0.00 0.00 3.08 0.00 0.00 2.27 1.56 1.53 0.00 0.00 0.70 0.00 3.28 0.00 0.00 0.00 0.00 0.00 1.51 0.00 4.84 1.37 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.40 5.26 1.85 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 2.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA lwr,RI_chr2L_542347_542429 chr2L - chr2L_542347_542429;chr2L_542351_542429 chr2L_542380_542429 chr2L_542430_542529;chr2L_542247_542346 0.75 0.45 2.73 0.00 1.55 0.00 1.12 0.82 0.00 1.23 1.32 0.86 0.69 1.23 0.97 0.47 0.00 0.00 0.00 0.68 1.29 0.46 1.90 0.75 0.00 0.86 0.00 0.00 1.88 0.50 0.00 0.00 0.88 0.00 0.53 1.81 0.00 1.50 0.00 1.56 1.73 0.60 0.70 0.93 1.12 1.29 0.00 0.76 1.69 0.47 1.30 0.00 0.46 0.40 1.88 1.02 1.55 2.76 K alternative_donor Arf79F,I_chr3L_22863166_22863946,I_chr3L_22863166_22864419,RI_chr3L_22863251_22863389,RI_chr3L_22863251_22863952,I_chr3L_22863251_22864009,I_chr3L_22863251_22864188,I_chr3L_22863251_22864501,I_chr3L_22863251_22864629,RI_chr3L_22863251_22864763,I_chr3L_22863251_22864866,RI_chr3L_22871119_22871250,I_chr3L_22871351_22871733 chr3L - chr3L_22863166_22865156 chr3L_22863166_22865023 chr3L_22863151_22863165;chr3L_22865157_22865157 100.00 96.67 100.00 100.00 100.00 96.55 100.00 98.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 100.00 98.65 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 94.74 100.00 96.77 K alternative_acceptor CG31633 chr2L - chr2L_6656131_6656195 chr2L_6656142_6656195 chr2L_6656196_6656264;chr2L_6656065_6656130 88.19 NA 87.50 88.89 NA NA 91.67 75.00 93.33 NA NA 72.73 NA 75.00 NA 91.67 NA NA NA 76.47 NA 94.74 94.44 87.50 NA NA 69.23 86.96 94.44 72.73 60.00 88.89 90.00 87.50 90.00 91.67 90.91 87.50 92.31 92.86 NA 63.64 NA 92.31 NA 86.67 100.00 100.00 NA 83.33 78.57 72.73 80.00 87.50 77.78 90.00 90.00 100.00 K intron_retention Cct1,Cct2 chr3L + chr3L_1546307_1550713 chr3L_1546306_1546307;chr3L_1550713_1550714 chr3L_1546118_1546306;chr3L_1550714_1551288 1.97 1.54 2.44 2.17 2.75 1.36 1.81 1.87 2.02 4.08 1.87 4.17 0.00 1.32 2.48 3.16 3.36 0.97 3.51 4.86 1.49 3.07 0.74 1.97 0.00 0.62 5.37 4.29 3.39 0.00 2.21 0.00 1.85 2.43 4.58 0.00 0.00 0.00 1.41 2.17 1.16 2.33 3.33 2.08 3.60 1.10 1.37 3.59 2.17 3.66 2.69 1.11 0.00 0.00 2.34 0.00 0.00 1.05 K jcn_only_AA CG17838,I_chr3R_16623576_16628011 chr3R + chr3R_16623576_16624036 chr3R_16623576_16624012 chr3R_16623476_16623575;chr3R_16624037_16624131 62.50 73.17 50.98 63.21 73.77 57.14 35.00 68.18 54.84 74.32 67.39 72.73 100.00 NA 60.00 63.08 67.50 48.39 56.00 47.27 51.52 62.79 61.63 83.78 59.46 54.24 69.57 50.00 55.26 51.85 60.00 44.00 56.67 62.92 74.36 82.46 58.67 65.45 52.17 70.71 56.67 60.00 62.50 67.80 41.38 63.33 46.15 71.13 50.00 NA 66.67 63.33 62.96 NA 57.89 NA 70.00 72.22 K intron_retention Nup154,I_chr2L_11009331_11009442,I_chr2L_11011380_11011453 chr2L + chr2L_11005302_11005367 chr2L_11005301_11005302;chr2L_11005367_11005368 chr2L_11005139_11005301;chr2L_11005368_11005730 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Eaf,RI_chr2R_3294566_3294636,I_chr2R_3294566_3294656,RI_chr2R_3294566_3294714,I_chr2R_3294566_3295255,I_chr2R_3294591_3295244 chr2R - chr2R_3294566_3295176;chr2R_3294566_3295244;chr2R_3294566_3294634;chr2R_3294566_3294636;chr2R_3294566_3294638;chr2R_3294566_3294642;chr2R_3294566_3294714 chr2R_3294566_3295280 chr2R_3294491_3294565;chr2R_3295281_3295302 3.85 7.69 5.26 0.00 0.00 7.14 0.00 4.35 10.81 0.00 6.25 3.03 15.38 7.14 5.56 0.00 0.00 0.00 5.56 2.44 6.25 0.00 4.76 5.26 13.33 0.00 5.56 0.00 0.00 0.00 6.25 0.00 4.00 0.00 0.00 5.26 5.26 0.00 13.64 3.57 0.00 3.85 7.14 0.00 5.88 6.25 0.00 0.00 3.23 0.00 0.00 0.00 14.29 12.50 4.55 8.33 0.00 3.85 K intron_retention Nop60B,I_chr2R_20063248_20063949,F_chr2R_20073291_20073744 chr2R + chr2R_20064355_20064415 chr2R_20064354_20064355;chr2R_20064415_20064416 chr2R_20063950_20064354;chr2R_20064416_20064807 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 K jcn_only_AA AT25722,CG3376 chr2R + chr2R_20151869_20152304 chr2R_20151869_20152108 chr2R_20151683_20151868;chr2R_20152305_20152726 100.00 100.00 100.00 NA NA 100.00 100.00 98.65 100.00 96.00 NA 98.72 100.00 100.00 94.12 100.00 NA 100.00 100.00 96.67 100.00 100.00 100.00 98.00 NA 90.32 97.30 NA 97.96 100.00 96.43 NA 96.00 100.00 96.30 90.48 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.15 K multi_cassette Nedd4,I_chr3L_17534127_17534409,I_chr3L_17534504_17535990,I_chr3L_17535485_17536604,I_chr3L_17536186_17536604,I_chr3L_17536713_17536777,I_chr3L_17536813_17536863 chr3L + chr3L_17534504_17536863 chr3L_17534504_17535299;chr3L_17535485_17535689;chr3L_17535913_17535990;chr3L_17536063_17536604;chr3L_17536713_17536863 chr3L_17535300_17535484;chr3L_17535690_17535912;chr3L_17535991_17536062;chr3L_17536605_17536712 chr3L_17534419_17534503;chr3L_17536864_17536877 97.22 90.00 92.86 65.38 83.33 90.00 62.50 94.12 100.00 92.86 100.00 100.00 100.00 88.89 90.00 100.00 100.00 90.00 71.43 97.22 90.00 100.00 100.00 93.75 88.89 100.00 94.12 100.00 93.75 93.75 100.00 100.00 100.00 94.44 100.00 100.00 95.65 100.00 85.00 100.00 90.91 96.15 100.00 100.00 100.00 100.00 90.00 100.00 91.67 100.00 100.00 91.67 100.00 87.50 100.00 100.00 100.00 94.12 K jcn_only_AA CG10874 chr2L - chr2L_2190785_2191849 chr2L_2191079_2191849 chr2L_2191850_2192090;chr2L_2190707_2190784 100.00 98.39 98.18 100.00 100.00 100.00 97.33 98.48 100.00 100.00 100.00 98.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.46 99.35 97.10 98.25 100.00 99.07 100.00 100.00 98.63 99.05 100.00 100.00 99.50 100.00 100.00 100.00 100.00 99.15 99.40 100.00 99.64 100.00 98.11 100.00 100.00 100.00 98.15 100.00 100.00 100.00 100.00 K jcn_only_AD Dsp1,I_chrX_16231287_16231413 chrX + chrX_16227752_16228333;chrX_16227804_16228333;chrX_16227677_16228333;chrX_16227797_16228333 chrX_16228273_16228333 chrX_16228334_16228446;chrX_16227667_16227676 50.00 NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389597_9390195;chr2R_9389597_9390151;chr2R_9389597_9389907;chr2R_9389597_9389940;chr2R_9389597_9390293;chr2R_9389597_9389751;chr2R_9389597_9389753;chr2R_9389597_9389757 chr2R_9389597_9390264 chr2R_9389497_9389596;chr2R_9390294_9390295 0.00 0.00 2.44 3.39 4.17 0.00 0.00 4.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.98 0.00 0.00 0.00 4.17 0.00 2.70 0.00 0.00 0.00 0.00 5.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 4.17 K jcn_only_AA CG31715,I_chr2L_10341933_10342151,I_chr2L_10341933_10342155 chr2L + chr2L_10341933_10342155;chr2L_10341933_10342151 chr2L_10341933_10342149 chr2L_10341833_10341932;chr2L_10342156_10342233 98.90 100.00 100.00 98.10 100.00 98.84 98.60 97.89 99.24 100.00 98.81 98.95 98.25 99.21 97.33 99.47 97.86 98.82 99.35 97.89 98.78 100.00 100.00 98.23 100.00 96.92 100.00 100.00 95.35 100.00 99.24 98.94 98.63 98.30 100.00 96.88 100.00 96.61 100.00 98.13 98.33 99.14 98.04 100.00 100.00 97.67 98.90 96.36 97.38 100.00 99.01 98.39 100.00 96.74 98.59 100.00 98.84 99.33 K jcn_only_AD gpp,I_chr3R_2271795_2272181,CG33324 chr3R + chr3R_2270033_2272181 chr3R_2271795_2272181 chr3R_2272182_2272281;chr3R_2269544_2270032 26.80 38.10 20.93 32.26 10.34 30.51 21.11 32.88 26.80 12.77 29.55 37.65 64.10 36.84 17.65 27.63 39.02 11.54 37.50 28.45 32.26 12.70 23.36 25.00 8.33 29.27 20.00 12.96 6.85 19.67 26.67 27.27 32.69 35.92 37.10 21.88 8.82 22.73 12.93 16.67 35.29 17.86 35.00 21.11 14.10 33.33 21.67 22.45 29.63 28.70 24.53 21.43 37.70 36.23 31.58 26.53 28.12 28.26 N alternative_acceptor CG7203,LKR,I_chr2L_7795654_7795717 chr2L - chr2L_7794769_7795509 chr2L_7795446_7795509 chr2L_7795510_7795653;chr2L_7794592_7794768 0.41 0.40 0.00 0.43 0.42 0.00 0.29 0.23 0.30 0.72 2.08 0.21 0.54 0.43 0.37 0.64 0.00 0.37 0.41 0.17 0.88 1.55 0.00 0.39 0.00 0.39 0.35 0.98 1.49 0.78 0.37 0.00 1.30 0.24 0.57 0.52 0.32 0.58 0.28 0.80 1.12 0.22 0.49 0.45 1.03 0.60 0.60 0.58 0.25 0.79 0.30 0.66 1.18 0.00 0.31 0.00 0.00 1.19 K intron_retention Pka-R2,I_chr2R_5911755_5913354,I_chr2R_5911803_5913333 chr2R - chr2R_5887031_5887238 chr2R_5887030_5887031;chr2R_5887238_5887239 chr2R_5886930_5887030;chr2R_5887239_5887420 0.00 0.00 2.70 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.85 0.00 NA 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 6.25 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA K alternative_acceptor CG11790,CG11791 chr3R + chr3R_20876091_20876902 chr3R_20876091_20876354 chr3R_20876022_20876090;chr3R_20876903_20877278 84.44 73.53 77.14 90.91 85.71 73.53 89.36 84.21 86.42 71.43 85.71 87.27 72.97 80.56 89.47 95.83 82.35 80.65 83.33 88.89 85.71 84.00 84.44 81.08 95.45 96.77 94.29 87.50 96.30 87.50 85.71 88.46 85.00 82.26 95.83 87.10 81.58 84.00 77.14 82.35 83.33 81.82 84.00 85.42 90.62 86.54 72.09 94.29 86.15 91.67 84.21 84.00 75.00 82.35 84.44 78.79 75.61 78.05 K alternative_acceptor CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_243673_244182;chr4_243657_244182;chr4_243639_244182 chr4_243585_244182 chr4_244183_244282;chr4_243557_243584 0.00 0.00 3.23 0.00 4.35 0.00 0.00 1.33 1.16 NA 0.00 1.32 2.63 0.00 0.00 0.00 3.23 7.69 2.13 1.27 5.56 5.26 0.00 0.00 10.00 0.00 4.17 0.00 0.00 0.00 1.64 6.67 0.00 0.00 0.00 12.50 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 16.67 6.67 0.00 10.00 1.05 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14741 chr3R - chr3R_7896552_7896607 chr3R_7896551_7896552;chr3R_7896607_7896608 chr3R_7896222_7896551;chr3R_7896608_7896831 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 4.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention HLH106,RI_chr3L_19787260_19787323 chr3L + chr3L_19791401_19791473 chr3L_19791400_19791401;chr3L_19791473_19791474 chr3L_19791242_19791400;chr3L_19791474_19792062 2.12 2.01 1.92 1.85 2.33 2.50 2.25 2.27 1.43 2.02 1.54 2.67 2.40 2.25 2.47 2.59 1.57 2.18 1.66 2.34 1.71 1.84 2.41 2.23 2.19 1.99 3.05 3.96 1.43 1.97 2.84 1.43 1.90 2.15 3.23 3.43 2.04 1.63 1.75 2.18 2.52 2.12 2.74 1.34 2.21 3.36 2.28 2.23 2.04 1.52 1.80 1.80 1.21 2.35 1.77 1.93 1.07 1.66 K intron_retention CG5059,I_chr3L_20509233_20511440 chr3L - chr3L_20508484_20508543 chr3L_20508483_20508484;chr3L_20508543_20508544 chr3L_20507785_20508483;chr3L_20508544_20508720 0.00 0.00 1.15 0.00 0.00 0.00 0.93 1.63 1.20 0.00 0.00 2.88 0.00 1.41 0.00 0.00 0.00 0.00 1.27 0.85 0.00 0.00 4.82 1.23 0.00 0.00 2.63 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 1.33 0.00 0.00 0.00 2.50 0.79 0.95 1.32 0.00 1.03 2.00 0.00 1.22 3.37 2.17 1.25 0.00 K cassette mthl10 chr3L - chr3L_333717_334974;chr3L_333641_334974 chr3L_333641_333941,chr3L_333717_333941;chr3L_334120_334974 chr3L_333942_334119 chr3L_333522_333640;chr3L_334975_335169 96.15 98.41 96.88 72.73 90.38 92.98 100.00 93.48 98.46 95.24 91.43 98.90 75.51 96.15 98.31 98.51 93.33 97.96 92.98 95.65 90.70 96.30 90.32 96.49 93.94 89.47 97.96 94.12 68.97 96.77 100.00 96.88 81.25 95.24 96.67 90.48 96.55 97.92 95.29 98.81 84.62 96.30 97.73 97.18 97.87 97.83 97.50 97.44 94.90 97.87 95.45 94.59 92.50 98.15 98.48 95.65 94.44 94.74 K alternative_donor CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908142_9908424,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907848_9908531 chr2L_9907848_9908424 chr2L_9907756_9907847;chr2L_9908532_9908619 98.41 100.00 96.43 100.00 100.00 100.00 100.00 97.50 98.41 100.00 92.86 100.00 94.44 95.65 100.00 97.96 95.45 100.00 96.67 98.95 90.48 95.18 98.31 97.44 97.50 100.00 100.00 94.12 98.04 98.15 100.00 100.00 97.87 97.96 100.00 98.51 97.50 100.00 100.00 98.36 100.00 100.00 95.83 100.00 96.67 98.15 97.83 98.04 100.00 100.00 98.11 96.00 100.00 100.00 100.00 96.97 100.00 100.00 K alternative_donor CG14411 chrX + chrX_14726979_14727176 chrX_14726994_14727176 chrX_14727177_14730337;chrX_14726671_14726978 93.88 92.59 90.48 100.00 96.43 100.00 87.23 91.38 98.44 91.43 90.91 98.46 92.00 97.14 100.00 96.67 100.00 90.62 93.55 96.72 87.50 98.04 90.54 93.24 100.00 97.06 96.10 92.31 95.12 92.31 92.31 98.15 93.98 91.84 93.88 88.89 98.33 89.06 89.02 93.15 88.57 93.51 92.00 94.74 95.12 89.80 94.00 95.56 95.08 94.03 93.22 96.77 94.59 95.65 84.85 89.06 93.48 95.00 K alternative_donor CG9135,I_chr2L_6050922_6051505 chr2L + chr2L_6050922_6051616 chr2L_6051068_6051616 chr2L_6051617_6052022;chr2L_6050822_6050921 0.00 NA NA 2.94 0.00 0.00 4.55 3.57 0.00 0.00 0.00 2.70 0.00 NA 0.00 0.00 6.67 0.00 3.85 1.59 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA 0.00 5.71 NA NA NA NA NA 3.45 NA 2.27 6.67 NA 0.00 NA NA 4.76 0.00 NA NA NA NA NA 8.00 NA NA NA K intron_retention CG3744,I_chr3R_20701248_20701968 chr3R - chr3R_20701722_20701968 chr3R_20701721_20701722;chr3R_20701968_20701969 chr3R_20701428_20701721;chr3R_20701969_20702068 70.91 94.12 65.62 78.79 70.97 73.08 82.35 68.18 78.12 63.64 72.00 78.95 73.08 67.86 64.71 58.54 70.00 55.88 63.41 70.59 81.82 83.33 77.14 83.33 91.30 79.49 86.49 65.00 68.29 57.69 66.67 70.59 64.44 74.47 81.08 89.74 75.44 79.31 73.08 55.26 67.86 83.02 60.71 69.70 63.64 62.86 65.00 54.79 70.91 75.00 81.58 76.19 94.12 93.33 68.89 64.00 70.00 47.06 K alternative_acceptor alpha-Man-I,I_chrX_10218352_10219759,I_chrX_10218390_10219759 chrX - chrX_10218390_10219846;chrX_10218575_10219846 chrX_10218352_10219846 chrX_10219847_10219859;chrX_10218290_10218351 14.29 NA NA NA NA NA NA 16.67 12.50 NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA K intron_retention CG14446 chrX + chrX_6125020_6125075 chrX_6125019_6125020;chrX_6125075_6125076 chrX_6124766_6125019;chrX_6125076_6126833 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 2.27 0.00 0.00 0.00 0.00 0.00 3.03 0.00 5.00 0.00 3.45 0.00 2.50 0.00 0.00 0.00 0.00 NA 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.61 0.00 0.00 NA 0.00 0.00 0.00 2.99 0.00 0.00 0.00 NA NA 2.17 0.00 0.00 NA K intron_retention plx,noncoding_14842 chr3R + chr3R_1511993_1512878 chr3R_1511992_1511993;chr3R_1512878_1512879 chr3R_1511864_1511992;chr3R_1512879_1513091 100.00 90.00 88.89 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 NA 87.50 92.86 88.89 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 90.91 100.00 NA 94.74 94.74 100.00 NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA 100.00 94.12 NA 100.00 NA NA NA 92.86 NA NA 100.00 K cassette Gug,R_chr3L_8444636_8444874,I_chr3L_8455244_8456103 chr3L + chr3L_8461805_8462509 chr3L_8461805_8461966;chr3L_8462024_8462509 chr3L_8461967_8462023 chr3L_8461647_8461804;chr3L_8462510_8462593 92.86 93.33 94.74 76.92 93.33 89.47 90.91 82.61 91.67 NA 78.57 91.67 92.31 92.86 94.12 94.12 90.00 91.67 100.00 96.88 87.50 94.12 90.91 85.71 100.00 81.25 100.00 NA 68.18 92.86 100.00 NA 100.00 100.00 91.67 85.71 96.88 91.67 83.33 100.00 NA 96.55 100.00 100.00 100.00 90.00 94.74 100.00 92.86 87.50 96.00 83.33 84.62 100.00 95.65 92.31 100.00 NA K intron_retention RI_chr2L_3706792_3706842,cutlet chr2L - chr2L_3709416_3709474 chr2L_3709415_3709416;chr2L_3709474_3709475 chr2L_3709276_3709415;chr2L_3709475_3709506 2.38 0.00 0.00 4.76 NA NA 0.00 0.00 10.81 NA 0.00 11.11 0.00 6.67 14.29 7.41 0.00 0.00 8.00 5.88 NA 0.00 0.00 0.00 NA 0.00 NA NA NA 6.25 0.00 NA 9.52 0.00 NA 0.00 NA 0.00 0.00 21.43 NA 12.90 NA NA 0.00 17.65 NA 17.65 7.69 NA 0.00 NA 13.33 NA 4.76 12.50 NA 16.00 K intron_retention Arp66B chr3L - chr3L_8108689_8108781 chr3L_8108688_8108689;chr3L_8108781_8108782 chr3L_8108508_8108688;chr3L_8108782_8108888 0.00 0.00 0.00 1.03 0.00 0.00 1.53 1.11 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.47 0.36 0.44 1.54 1.63 2.83 2.83 1.27 1.04 0.00 1.32 1.14 0.00 0.00 0.00 0.64 0.00 0.00 1.15 1.85 0.40 0.00 0.00 0.60 1.01 0.00 0.00 1.01 0.85 0.00 0.00 0.00 1.49 0.73 0.00 0.00 0.42 K intron_retention gpp,I_chr3R_2271795_2272181,CG33324 chr3R + chr3R_2270033_2272181 chr3R_2270032_2270033;chr3R_2272181_2272182 chr3R_2269544_2270032;chr3R_2272182_2272281 3.81 0.00 3.85 6.12 5.00 6.25 3.77 7.69 4.71 3.23 8.33 5.00 NA 10.34 6.25 0.00 10.00 0.00 8.33 4.76 11.76 3.61 9.23 5.41 0.00 8.70 4.17 5.56 2.00 12.20 11.11 0.00 0.00 7.69 0.00 0.00 5.26 2.63 2.11 1.30 0.00 0.00 13.64 1.92 0.00 6.25 2.86 0.00 4.65 3.45 4.92 4.00 0.00 0.00 0.00 0.00 2.94 0.00 K intron_retention Best1,I_chr3R_5991957_5995913,RI_chr3R_5993184_5995905 chr3R - chr3R_5988033_5988920 chr3R_5988032_5988033;chr3R_5988920_5988921 chr3R_5987441_5988032;chr3R_5988921_5989578 4.62 4.29 3.08 6.35 7.50 5.80 1.92 6.56 5.79 1.92 4.17 6.19 5.88 7.50 4.62 7.55 7.89 0.00 0.00 4.83 2.13 2.50 4.85 4.12 4.65 0.00 6.06 7.14 0.00 2.94 6.56 2.13 9.09 8.70 2.82 3.92 3.30 5.77 5.38 7.00 0.00 3.88 7.14 5.08 4.55 4.00 5.56 3.51 5.77 3.39 5.10 5.00 0.00 3.57 3.77 5.63 0.00 1.75 K intron_retention CG18854,RI_chr2L_9789598_9789790,I_chr2L_9789694_9789790,REI_chr2L_9789718_9789790,I_chr2L_9790307_9790615,I_chr2L_9790310_9790556 chr2L - chr2L_9789718_9789790 chr2L_9789717_9789718;chr2L_9789790_9789791 chr2L_9789681_9789717;chr2L_9789791_9789832 15.14 NA 18.75 13.64 22.22 NA 16.00 17.65 21.74 NA NA 20.83 14.29 10.00 10.00 NA 17.65 5.88 NA 0.00 NA NA NA NA NA NA 28.57 21.43 14.29 NA 7.69 NA NA 7.89 NA NA NA NA 23.08 8.70 NA 8.70 21.05 NA NA 0.00 NA 0.00 17.50 NA NA 38.46 NA NA 16.67 NA NA 0.00 K jcn_only_AA CG9855,RI_chr3R_222522_222581,RI_chr3R_222525_222604,I_chr3R_223384_223429 chr3R - chr3R_222528_222581;chr3R_222522_222581 chr3R_222525_222581 chr3R_222582_222650;chr3R_222457_222521 93.62 95.16 84.48 93.75 93.02 95.56 88.75 95.24 94.34 94.74 90.70 88.64 95.12 96.36 91.18 97.10 91.18 92.16 91.23 93.75 88.89 94.83 95.29 93.33 96.15 92.54 97.56 91.49 91.89 96.30 100.00 91.86 94.79 93.42 95.83 95.52 93.33 94.12 95.29 88.32 92.17 95.76 93.88 95.77 90.43 93.33 93.62 90.71 91.35 88.00 95.89 92.86 91.25 93.94 94.59 91.01 96.34 89.14 K intron_retention CG11163,I_chr2R_1666219_1669711 chr2R - chr2R_1662576_1662630 chr2R_1662575_1662576;chr2R_1662630_1662631 chr2R_1662507_1662575;chr2R_1662631_1662695 5.00 5.88 6.90 11.54 0.00 6.25 6.94 7.55 5.48 5.00 5.97 5.52 3.70 4.82 8.14 9.20 3.12 9.76 6.49 7.74 4.41 9.23 5.00 5.88 7.69 5.77 9.84 5.88 5.56 1.37 3.19 1.59 1.72 4.27 3.39 0.00 4.95 6.17 0.00 4.92 0.00 7.64 4.62 5.68 2.60 0.00 1.98 0.00 4.71 3.45 6.19 6.06 6.25 3.12 5.88 1.72 1.27 0.81 K intron_retention Dp,I_chr2R_9111166_9112971,REI_chr2R_9113257_9113316 chr2R + chr2R_9112663_9112971 chr2R_9112662_9112663;chr2R_9112971_9112972 chr2R_9112653_9112662;chr2R_9112972_9113071 100.00 90.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 93.33 100.00 100.00 100.00 100.00 NA 88.57 100.00 94.12 93.75 100.00 94.12 92.31 100.00 100.00 91.67 100.00 100.00 91.67 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 90.91 88.89 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 91.67 K alternative_donor RI_chr3L_17480321_17481164,Oatp74D,chr3L_17480319_17480976.0,I_chr3L_17480594_17481164,I_chr3L_17500359_17500724 chr3L + chr3L_17480290_17481164;chr3L_17480594_17481164;chr3L_17480301_17481164 chr3L_17480321_17481164 chr3L_17481165_17481264;chr3L_17480274_17480289 16.67 NA NA 16.67 NA NA 0.00 10.00 4.35 NA NA 16.67 NA NA NA 0.00 NA 0.00 NA 10.00 NA 18.18 0.00 NA 20.00 NA 20.00 16.67 20.00 NA NA NA 20.00 8.33 NA NA 22.22 NA 25.00 11.11 NA 14.29 NA 12.50 NA 25.00 NA 18.18 7.69 NA NA NA NA NA 0.00 25.00 NA 20.00 K intron_retention Past1,I_chr3R_8525058_8528541,I_chr3R_8529216_8529360 chr3R + chr3R_8525058_8529360 chr3R_8525057_8525058;chr3R_8529360_8529361 chr3R_8524958_8525057;chr3R_8529361_8529460 1.06 0.41 0.70 1.30 0.57 1.96 1.41 0.89 0.75 1.05 0.61 1.06 0.34 2.03 1.30 1.10 0.31 1.02 0.60 0.83 0.99 2.61 1.30 1.11 0.89 0.58 1.72 4.40 1.98 1.63 0.53 0.74 1.30 0.93 1.42 1.43 1.08 0.95 0.58 2.46 2.53 1.32 0.40 1.86 1.46 2.16 1.40 4.19 0.79 0.89 1.30 1.15 0.53 1.01 0.73 0.94 0.18 3.61 K alternative_acceptor kst,I_chr3L_3365752_3365816,I_chr3L_3367008_3367514 chr3L + chr3L_3365752_3365816 chr3L_3365752_3365810 chr3L_3365652_3365751;chr3L_3365817_3365916 99.56 99.16 99.60 99.44 99.56 100.00 100.00 99.74 99.66 99.37 100.00 99.80 99.53 99.64 99.63 99.65 99.51 99.60 99.55 99.75 99.60 99.42 99.54 99.48 99.10 99.53 99.20 98.77 99.40 99.29 99.53 99.36 99.16 99.72 100.00 99.70 99.75 100.00 99.59 99.66 99.55 99.27 99.49 100.00 99.60 99.77 99.49 99.54 99.80 99.25 100.00 99.29 99.66 99.49 99.38 100.00 99.70 99.49 K alternative_donor CG6664 chr3L - chr3L_17008367_17008842 chr3L_17008367_17008772 chr3L_17008241_17008366;chr3L_17008843_17008976 3.45 4.26 4.76 5.97 4.35 4.76 4.00 1.72 2.78 4.00 0.00 2.82 5.41 6.25 1.89 5.56 7.69 9.09 0.00 2.60 5.41 2.38 4.92 1.89 3.03 4.35 3.45 5.71 5.77 3.64 5.88 2.63 2.08 1.72 7.89 5.00 0.00 2.27 2.50 2.50 2.70 4.11 2.94 1.92 2.38 3.39 0.00 2.35 4.11 2.44 7.55 2.27 2.27 3.45 5.56 2.56 4.76 4.41 K intron_retention gem,I_chr2R_6015083_6015660 chr2R + chr2R_6016198_6016327 chr2R_6016197_6016198;chr2R_6016327_6016328 chr2R_6016086_6016197;chr2R_6016328_6016534 11.90 11.36 9.78 14.53 19.18 8.82 5.61 11.85 13.44 18.18 13.64 10.76 15.29 13.33 9.20 9.80 13.33 9.23 10.81 11.04 12.99 23.46 7.29 7.80 12.36 26.47 6.85 13.79 31.37 13.95 16.07 13.21 14.93 12.00 10.61 9.30 11.45 15.15 11.49 12.17 15.79 11.73 11.90 8.26 13.70 15.29 5.21 17.74 10.47 10.98 10.64 14.49 12.39 7.23 12.12 9.30 7.76 11.86 K intron_retention CG30428,RI_chr2R_21141343_21141399 chr2R + chr2R_21141285_21141342 chr2R_21141284_21141285;chr2R_21141342_21141343 chr2R_21141243_21141284;chr2R_21141343_21141407 3.45 NA NA 0.00 NA NA 0.00 9.52 3.45 NA NA 17.65 NA NA NA NA NA NA NA 10.53 NA NA 8.57 0.00 NA NA 6.67 NA NA NA NA NA 21.05 0.00 NA NA NA 0.00 NA 5.56 NA 3.45 NA 0.00 NA NA NA 0.00 7.41 NA NA NA NA NA 0.00 NA NA 7.14 N alternative_donor Hcf,I_chr4_391984_392875 chr4 + chr4_380985_381212;chr4_380602_381212;chr4_380911_381212;chr4_380607_381212 chr4_380646_381212 chr4_381213_381632;chr4_380600_380601 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 N jcn_only_AD I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545799_17545850;chr2R_17545767_17545850;chr2R_17545615_17545850;chr2R_17545781_17545850;chr2R_17545690_17545850 chr2R_17545686_17545850 chr2R_17545851_17545985;chr2R_17545613_17545614 10.30 12.33 5.71 8.99 5.88 7.87 9.47 4.59 5.17 18.52 7.81 6.96 18.64 8.62 3.57 10.34 10.14 2.94 4.11 6.49 4.17 20.00 35.14 28.21 8.70 10.81 36.84 NA 9.46 34.29 10.26 11.54 8.33 3.74 21.74 21.88 22.39 11.32 25.93 22.58 14.29 6.99 8.70 26.67 9.47 11.48 16.07 4.88 12.07 21.95 14.29 16.13 10.91 7.32 5.41 30.16 29.63 7.02 K jcn_only_AA CG5646,I_chr3R_23386250_23386484,I_chr3R_23386287_23386484 chr3R - chr3R_23386250_23386484;chr3R_23386220_23386484;chr3R_23386287_23386484 chr3R_23386237_23386484 chr3R_23386485_23386584;chr3R_23386187_23386219 70.59 66.67 72.41 82.35 90.00 67.86 87.50 92.50 76.71 NA 90.00 70.00 NA 75.00 62.50 60.00 45.00 60.00 85.71 87.30 82.14 56.00 83.93 76.19 70.00 NA 70.18 64.00 73.68 68.75 71.64 60.00 80.95 82.61 67.44 76.92 82.09 86.21 56.10 51.06 85.00 73.68 75.00 75.44 68.97 70.59 78.38 52.78 62.79 60.61 63.04 70.00 47.62 70.59 61.90 70.59 80.77 NA K alternative_last_exon I_chrX_13751182_13777268,mamo,C_chrX_13795677_13808662,CG32613 chrX - chrX_13795677_13861302 chrX_13847260_13861302 chrX_13795516_13795676 chrX_13844355_13847259 chrX_13861303_13861364 0.00 0.00 0.00 6.25 0.00 0.00 4.76 3.33 2.78 0.00 0.00 4.00 4.55 6.67 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 5.56 0.00 NA 0.00 0.00 0.00 2.50 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Or45b chr2R + chr2R_5448108_5448164 chr2R_5448107_5448108;chr2R_5448164_5448165 chr2R_5447932_5448107;chr2R_5448165_5448263 100.00 NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG6236 chr3R - chr3R_11153785_11153876 chr3R_11153813_11153876 chr3R_11153877_11153988;chr3R_11153649_11153784 1.10 2.94 0.00 0.00 NA 0.00 0.00 4.00 3.03 3.45 NA 0.00 NA NA 5.56 6.98 NA NA NA 1.30 NA 0.00 0.00 2.44 0.00 NA 3.45 3.23 0.00 1.82 0.00 0.00 0.00 2.17 0.00 3.23 3.45 0.00 0.00 1.10 0.00 0.00 NA 2.78 2.56 0.00 0.00 2.27 2.00 7.32 3.92 2.33 0.00 0.00 0.00 0.00 2.00 4.48 N intron_retention CG9338,CG31675 chr2L + chr2L_20866001_20866935 chr2L_20866000_20866001;chr2L_20866935_20866936 chr2L_20866936_20867640 6.90 NA NA NA NA NA NA NA 23.53 NA NA 7.14 NA NA NA NA NA NA NA 5.88 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA K intron_retention CG11875,I_chr3R_21078958_21079044 chr3R + chr3R_21074304_21074360 chr3R_21074303_21074304;chr3R_21074360_21074361 chr3R_21073895_21074303;chr3R_21074361_21074828 11.11 3.45 0.00 16.67 10.53 16.67 4.76 0.00 1.89 NA 21.05 6.38 4.35 7.69 8.89 3.12 9.52 22.22 8.00 14.29 0.00 24.14 14.63 13.89 23.53 19.05 14.71 21.74 13.79 11.11 31.82 12.20 11.63 11.43 3.57 29.41 4.08 10.00 12.07 9.23 20.51 10.42 8.33 7.50 14.29 12.73 11.63 14.81 7.27 10.42 7.69 5.00 0.00 13.89 6.67 16.00 11.11 11.11 K alternative_acceptor CG15118,I_chr2R_15024324_15024455 chr2R - chr2R_15023758_15023827 chr2R_15023761_15023827 chr2R_15023828_15024134;chr2R_15023444_15023757 97.37 96.00 100.00 96.67 100.00 86.67 100.00 93.33 98.08 100.00 100.00 89.66 94.74 100.00 100.00 95.00 94.12 100.00 94.12 95.56 100.00 97.92 94.87 100.00 100.00 100.00 97.37 96.97 96.43 100.00 94.12 100.00 97.78 100.00 100.00 96.00 98.39 96.00 97.37 98.31 95.45 97.30 100.00 95.12 94.44 96.55 94.12 95.45 88.89 100.00 96.55 100.00 100.00 100.00 100.00 96.77 97.44 93.33 K intron_retention RhoGAP68F,RI_chr3L_12133229_12134100 chr3L + chr3L_12132052_12133062 chr3L_12132051_12132052;chr3L_12133062_12133063 chr3L_12131974_12132051;chr3L_12133063_12133228 0.00 0.00 0.00 1.89 0.00 0.00 2.68 0.00 2.60 0.00 0.00 0.00 0.00 1.72 1.52 2.30 0.00 0.00 0.00 0.00 0.00 5.26 2.56 0.00 3.85 0.00 0.00 0.00 5.88 0.00 3.51 0.00 2.56 2.22 NA 0.00 0.00 0.00 0.00 0.00 5.56 2.04 3.70 0.00 2.94 0.00 0.00 2.33 1.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 K intron_retention CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_264212_264259 chr4_264211_264212;chr4_264259_264260 chr4_263892_264211;chr4_264260_264374 4.44 3.64 9.09 13.73 4.44 6.35 7.46 9.09 3.28 0.00 3.70 3.60 10.53 6.82 8.93 9.09 3.77 7.14 3.85 3.87 5.08 7.41 3.12 0.00 7.41 13.16 2.38 NA 0.00 3.33 5.38 0.00 0.00 6.67 0.00 NA 6.56 0.00 1.67 2.60 5.26 6.80 9.52 8.11 6.25 0.00 0.00 3.23 7.34 8.00 0.00 0.00 0.00 6.52 9.46 4.17 2.94 9.09 N intron_retention eIF-1A,I_chr3R_14106104_14107415,I_chr3R_14106955_14107415 chr3R + chr3R_14100864_14101131 chr3R_14100863_14100864;chr3R_14101131_14101132 chr3R_14100759_14100863;chr3R_14101132_14101148 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 41.67 100.00 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA K intron_retention Axs,RI_chrX_16575605_16575790,RI_chrX_16575870_16575942 chrX - chrX_16575605_16575942 chrX_16575604_16575605;chrX_16575942_16575943 chrX_16575505_16575604;chrX_16575943_16576042 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 5.88 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA 9.09 3.85 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K intron_retention mod(mdg4),EI_chr3R_17202755_17203009,REI_chr3R_17202848_17203009,EI_chr3R_17202924_17203009 chr3R - chr3R_17202799_17203009 chr3R_17202798_17202799;chr3R_17203009_17203010 chr3R_17202748_17202798;chr3R_17203010_17203090 0.00 2.38 0.00 3.08 0.00 0.00 5.36 0.00 1.19 0.00 0.00 1.00 0.00 0.00 0.00 1.92 0.00 0.00 4.26 2.50 0.00 2.22 0.87 0.00 2.70 0.00 0.00 0.00 10.53 0.00 0.00 0.00 0.00 4.41 3.92 0.00 0.00 1.39 6.52 1.39 0.00 1.45 5.88 1.23 0.00 4.76 0.00 0.00 1.00 0.00 4.00 1.80 5.00 4.55 0.00 0.00 4.65 0.00 K alternative_acceptor Dp,I_chr2R_9111166_9112971,REI_chr2R_9113257_9113316 chr2R + chr2R_9113257_9113316 chr2R_9113257_9113313 chr2R_9113201_9113256;chr2R_9113317_9113416 88.73 90.32 97.06 89.47 86.21 84.62 79.55 87.50 85.71 84.00 90.00 88.73 79.31 82.14 91.67 94.29 91.67 95.00 73.91 92.21 84.00 86.49 90.91 88.89 96.43 95.24 88.37 93.75 82.61 90.00 100.00 95.65 93.10 86.27 95.83 93.75 82.98 85.71 86.76 92.11 96.67 90.00 89.47 90.24 84.62 88.57 87.50 84.44 86.67 89.66 82.93 85.71 85.71 92.59 85.71 83.87 73.33 95.56 K intron_retention SPoCk,I_chr3L_22776339_22776519,I_chr3L_22777865_22778359 chr3L + chr3L_22766817_22768074 chr3L_22766816_22766817;chr3L_22768074_22768075 chr3L_22766783_22766816;chr3L_22768075_22768237 93.75 93.75 90.91 78.95 100.00 90.91 92.31 93.33 95.83 93.33 88.89 92.50 100.00 NA 92.86 92.31 NA NA 100.00 95.92 NA NA 95.45 100.00 100.00 93.33 100.00 NA 96.15 92.86 100.00 NA 100.00 100.00 90.91 95.83 85.71 90.00 87.50 100.00 100.00 100.00 100.00 93.33 NA 95.00 100.00 89.66 91.67 NA 95.24 100.00 90.00 NA 93.33 NA NA 91.67 K intron_retention CG8594 chr2R + chr2R_8459883_8460005 chr2R_8459882_8459883;chr2R_8460005_8460006 chr2R_8459617_8459882;chr2R_8460006_8460110 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG14408,RI_chrX_14722065_14722693 chrX - chrX_14722065_14723168 chrX_14722065_14722693 chrX_14721965_14722064;chrX_14723169_14724380 12.50 22.22 NA 37.50 NA NA 40.00 14.29 11.76 NA 7.69 20.00 14.29 30.00 7.69 22.22 16.67 22.22 9.09 17.65 11.11 16.67 11.11 12.50 NA 11.11 10.00 NA NA 6.67 7.69 NA 7.41 13.04 18.18 27.27 10.00 16.67 0.00 17.65 18.18 7.69 10.00 18.18 12.50 7.14 0.00 42.86 10.53 7.69 7.69 9.09 NA 7.69 22.22 12.50 14.29 5.56 K jcn_only_AA stv chr3L + chr3L_13471583_13474135 chr3L_13471583_13474132 chr3L_13470717_13471582;chr3L_13474136_13474235 34.78 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 34.78 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor I_chr2R_7171366_7171418,fbl6,dare chr2R - chr2R_7176066_7176897;chr2R_7176066_7177174 chr2R_7176066_7176572 chr2R_7175150_7176065;chr2R_7177175_7177253 23.53 22.22 31.58 23.53 30.00 23.53 22.22 20.59 28.95 27.27 60.00 41.38 14.29 28.57 25.00 29.63 11.76 21.43 21.74 20.45 25.00 30.77 19.23 12.50 23.08 21.43 21.74 33.33 21.43 23.53 15.79 36.36 30.77 24.14 18.75 33.33 31.82 20.00 20.00 30.77 33.33 17.65 42.86 23.53 25.00 23.08 20.00 31.82 23.08 28.57 21.74 22.22 50.00 27.27 18.52 20.00 28.57 33.33 K alternative_donor arm,I_chrX_1790787_1794076,I_chrX_1793073_1793336,I_chrX_1793073_1793350,I_chrX_1793073_1793389,I_chrX_1793073_1793734,I_chrX_1793073_1794406,RI_chrX_1795648_1795745,I_chrX_1798310_1798525,I_chrX_1798315_1798577 chrX - chrX_1793073_1793794;chrX_1793073_1793413 chrX_1793073_1793431 chrX_1793013_1793072;chrX_1793795_1793834 16.67 0.00 22.22 20.00 0.00 16.67 0.00 9.09 21.43 0.00 33.33 30.00 NA 28.57 22.22 0.00 0.00 0.00 25.00 20.00 0.00 36.36 36.36 44.44 20.00 40.00 20.00 14.29 0.00 20.00 40.00 0.00 28.57 26.67 16.67 NA 25.00 0.00 25.00 16.67 0.00 23.08 16.67 21.43 0.00 15.38 40.00 0.00 14.29 12.50 0.00 33.33 0.00 0.00 25.00 50.00 0.00 0.00 K intron_retention Sra-1 chr3R + chr3R_11159318_11159387 chr3R_11159317_11159318;chr3R_11159387_11159388 chr3R_11158991_11159317;chr3R_11159388_11161219 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.55 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.56 0.63 0.55 0.00 1.64 0.00 0.00 0.59 0.00 0.52 1.18 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.31 0.37 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG11138 chrX - chrX_12467848_12475604 chrX_12467893_12475604 chrX_12475605_12477211;chrX_12467758_12467847 12.50 12.00 17.65 6.67 6.67 6.25 NA 15.38 10.81 8.33 12.50 13.51 NA 15.00 12.50 11.11 17.65 14.29 6.67 17.65 20.00 18.92 11.90 11.11 14.29 40.00 8.33 12.50 NA 11.54 15.38 NA 3.70 15.15 22.22 38.46 9.43 14.29 12.50 15.62 NA 8.77 5.26 14.81 16.67 6.67 13.64 11.11 12.82 6.25 5.41 10.00 10.00 12.50 4.35 4.35 15.79 23.53 K alternative_donor rin,I_chr3R_9476825_9476895 chr3R + chr3R_9476782_9476895 chr3R_9476825_9476895 chr3R_9476896_9476995;chr3R_9476725_9476781 0.62 0.50 0.00 1.05 0.63 0.00 0.47 0.37 0.65 2.27 0.00 0.00 0.00 0.00 0.00 1.11 0.00 1.12 0.61 0.72 0.00 0.87 0.00 0.45 0.70 0.70 2.03 0.62 6.25 0.47 1.35 0.93 1.09 1.08 0.00 1.40 0.62 1.06 0.41 0.65 0.00 0.95 1.55 1.53 0.00 3.12 0.00 1.72 0.63 0.00 0.42 0.75 0.00 2.92 0.51 0.00 0.98 0.00 K intron_retention AnnIX,I_chr3R_16895383_16895999 chr3R + chr3R_16894742_16895999 chr3R_16894741_16894742;chr3R_16895999_16896000 chr3R_16894560_16894741;chr3R_16896000_16896025 10.39 10.61 8.45 33.33 15.15 12.12 25.00 10.39 10.16 3.85 12.00 5.45 33.33 15.38 14.58 9.86 15.79 10.71 11.90 11.43 6.06 6.11 12.15 10.34 15.79 14.81 18.31 24.32 7.37 11.29 10.91 4.84 5.31 14.75 12.07 4.52 5.61 5.26 6.96 10.91 10.53 11.93 10.26 5.68 2.90 6.57 5.30 12.20 8.16 6.31 8.25 11.48 6.35 8.43 18.52 4.44 4.81 9.52 K intron_retention CG42593,F_chrX_7841357_7841447 chrX + chrX_7834757_7834815 chrX_7834756_7834757;chrX_7834815_7834816 chrX_7834528_7834756;chrX_7834816_7835228 19.19 16.00 23.53 18.75 19.05 17.39 21.74 17.86 16.88 NA 15.79 10.20 24.24 21.43 28.12 28.57 9.09 25.93 21.05 12.50 14.81 18.18 19.15 20.59 0.00 8.70 10.81 17.65 18.18 7.69 17.39 50.00 26.67 10.00 5.88 8.70 19.35 12.50 12.82 20.83 35.71 19.23 10.00 19.35 40.00 31.82 25.00 26.92 19.67 46.15 21.05 33.33 35.71 13.33 13.89 25.00 50.00 31.58 N intron_retention Neu3,F_chr3R_10498229_10498337 chr3R - chr3R_10496565_10498144 chr3R_10496564_10496565;chr3R_10498144_10498145 chr3R_10496222_10496564;chr3R_10498145_10498228 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor nct,I_chr3R_20679262_20679308 chr3R + chr3R_20679809_20680083 chr3R_20679809_20679946 chr3R_20679598_20679808;chr3R_20680084_20680151 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.25 100.00 100.00 98.91 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.06 100.00 K alternative_acceptor Nhe2,I_chr2L_21122390_21122912 chr2L + chr2L_21124522_21125346 chr2L_21124522_21125316 chr2L_21124443_21124521;chr2L_21125347_21125439 25.45 30.56 22.22 35.71 32.43 23.91 13.58 21.74 29.27 21.88 16.67 50.00 28.21 31.71 22.45 17.39 20.59 17.50 33.33 24.39 8.89 36.36 24.53 23.91 30.56 36.59 25.00 35.29 29.17 31.43 26.53 21.43 26.32 22.97 19.35 37.50 23.08 31.71 28.07 25.45 31.58 27.85 20.00 32.65 31.82 21.62 34.62 30.00 19.63 18.52 29.82 29.41 6.67 42.86 22.45 14.29 18.92 15.38 K alternative_last_exon Nf1 chr3R + chr3R_21819207_21820288 chr3R_21819207_21819386 chr3R_21820289_21821459 chr3R_21819387_21819934 chr3R_21819041_21819206 42.86 35.00 45.00 48.21 40.00 28.57 54.55 42.11 43.10 50.00 52.94 35.71 36.67 37.04 34.78 39.34 44.44 44.44 30.30 45.45 46.15 66.67 68.00 50.00 58.33 37.50 52.63 77.78 35.71 41.67 50.00 31.25 42.86 44.90 53.33 66.67 61.54 44.44 38.46 43.33 41.67 39.53 40.91 47.37 33.33 45.83 47.06 29.17 34.62 41.18 50.00 41.67 50.00 37.50 40.00 40.00 41.18 19.05 K intron_retention Ac3,I_chr2L_21635211_21637957,I_chr2L_21643253_21646594 chr2L + chr2L_21641325_21641378 chr2L_21641324_21641325;chr2L_21641378_21641379 chr2L_21641249_21641324;chr2L_21641379_21641604 2.94 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.88 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA K alternative_acceptor CG1347 chr3R + chr3R_1503487_1503739 chr3R_1503487_1503735 chr3R_1503387_1503486;chr3R_1503740_1505431 100.00 100.00 94.74 100.00 100.00 100.00 94.74 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 96.15 100.00 97.44 100.00 93.75 93.33 100.00 93.75 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 95.00 NA 97.30 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 88.89 100.00 K intron_retention Rbp2,I_chrX_16343528_16343906 chrX + chrX_16344535_16345307 chrX_16344534_16344535;chrX_16345307_16345308 chrX_16344347_16344534;chrX_16345308_16345592 3.24 3.02 10.00 2.70 3.77 0.00 2.60 3.91 5.03 5.40 10.87 1.75 0.00 0.00 5.66 8.57 2.78 6.82 0.00 1.78 11.90 1.56 2.14 3.36 2.03 5.41 3.78 1.20 6.55 3.59 9.09 3.33 3.27 1.76 1.81 1.50 4.22 4.04 2.97 1.27 1.92 3.02 4.76 6.76 3.12 3.47 2.38 3.65 3.15 1.23 2.83 4.72 4.64 3.24 1.64 3.21 5.26 5.62 K alternative_acceptor cno,I_chr3R_999718_999986,I_chr3R_999737_999777 chr3R - chr3R_999718_999777 chr3R_999737_999777 chr3R_999778_999877;chr3R_999637_999717 0.61 0.00 0.00 1.32 2.00 0.00 0.95 1.59 0.66 0.00 0.00 1.03 0.00 2.04 0.00 0.00 2.56 0.00 0.00 0.61 0.00 0.00 0.69 0.00 0.00 0.00 1.00 2.24 1.01 0.00 0.00 0.00 1.27 0.00 1.56 1.05 0.68 1.39 0.63 0.00 0.00 0.83 0.00 1.19 0.00 1.41 1.63 0.00 1.01 0.59 0.74 0.00 1.32 0.00 1.54 1.09 0.89 0.00 K alternative_donor CG3631 chr3R + chr3R_10705483_10705553 chr3R_10705488_10705553 chr3R_10705554_10705765;chr3R_10705178_10705482 18.18 NA NA 25.00 NA NA NA 13.33 18.18 NA NA 5.56 NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA 18.18 NA NA NA NA NA NA NA NA NA N jcn_only_AD Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11835112_11835624;chr2R_11835112_11835509 chr2R_11835112_11835668 chr2R_11834432_11835111;chr2R_11835669_11836215 8.70 8.93 12.61 8.64 8.18 8.97 3.30 5.77 4.96 7.48 10.00 9.90 17.74 10.26 7.14 11.83 4.82 8.05 6.38 10.40 8.54 10.65 9.27 9.45 3.57 1.14 12.09 8.14 5.83 10.83 5.81 8.89 11.48 8.70 12.69 7.46 9.52 7.57 8.22 8.57 4.72 9.61 5.88 5.31 10.89 13.56 7.00 9.38 4.79 13.71 8.33 10.66 13.56 9.21 4.39 10.28 5.38 8.70 K alternative_donor CG15073 chr2R + chr2R_14594434_14594602 chr2R_14594521_14594602 chr2R_14594603_14594797;chr2R_14594410_14594433 100.00 83.33 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA NA NA NA 85.71 100.00 91.67 NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 NA 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 88.89 NA 85.71 100.00 100.00 NA 100.00 NA 85.71 100.00 88.89 100.00 K intron_retention CG18228 chr3R - chr3R_4087322_4087522 chr3R_4087321_4087322;chr3R_4087522_4087523 chr3R_4087312_4087321;chr3R_4087523_4087669 45.00 54.55 33.33 53.85 NA 26.67 48.28 50.00 47.62 NA 35.71 48.15 47.06 45.00 50.00 41.18 50.00 45.45 36.36 52.38 41.67 NA NA 31.25 NA 36.36 28.57 35.71 NA NA 28.00 NA NA 45.16 53.85 NA NA NA NA 50.00 NA 37.50 50.00 NA NA 50.00 NA NA 38.24 45.00 50.00 41.67 50.00 36.36 26.32 42.86 40.00 38.46 K intron_retention CG6838,I_chr3L_22709306_22709668 chr3L - chr3L_22710181_22710325 chr3L_22710180_22710181;chr3L_22710325_22710326 chr3L_22710071_22710180;chr3L_22710326_22710385 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.12 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG7203,LKR,I_chr2L_7795654_7795717 chr2L - chr2L_7794527_7794591 chr2L_7794526_7794527;chr2L_7794591_7794592 chr2L_7794148_7794526;chr2L_7794592_7794768 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon Pop2,RI_chr3L_11992097_11993849 chr3L - chr3L_11992097_11993849 chr3L_11993791_11993849 chr3L_11990125_11992096 chr3L_11992711_11993790 chr3L_11993850_11993949 98.65 97.37 98.65 98.18 98.11 98.28 98.15 97.92 96.97 100.00 98.21 99.13 97.96 96.43 98.63 97.56 100.00 100.00 98.41 97.16 96.49 98.32 98.21 100.00 97.06 98.61 99.08 100.00 99.05 98.63 100.00 100.00 100.00 97.83 98.44 98.73 100.00 100.00 99.10 99.20 98.97 99.21 98.18 98.00 100.00 99.13 98.57 100.00 99.10 99.18 98.96 100.00 98.57 98.63 98.63 98.82 99.00 99.01 K intron_retention CG11168,I_chr3R_20745770_20745849,I_chr3R_20745983_20746038 chr3R + chr3R_20745770_20745842 chr3R_20745769_20745770;chr3R_20745842_20745843 chr3R_20745670_20745769;chr3R_20745843_20745958 97.22 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 90.91 NA 94.44 NA NA NA NA NA NA 90.91 NA 92.31 100.00 100.00 NA NA NA NA NA 90.91 100.00 90.00 100.00 NA 87.50 NA NA NA 88.24 100.00 NA NA NA NA NA 100.00 NA NA NA K intron_retention CG31150,Hmt-1 chr3R - chr3R_11677700_11678449 chr3R_11677699_11677700;chr3R_11678449_11678450 chr3R_11677472_11677699;chr3R_11678450_11678649 0.92 2.27 0.00 0.00 0.74 0.00 6.19 3.27 0.92 2.11 1.01 0.00 1.68 0.00 1.44 0.00 0.00 0.00 0.00 0.68 0.00 9.90 2.17 1.53 5.56 1.25 0.62 0.00 1.98 0.00 3.45 2.90 1.76 0.92 1.85 2.61 2.32 1.12 2.13 1.36 0.00 0.68 0.00 1.60 0.91 0.00 1.56 0.00 0.00 2.86 3.06 0.83 0.00 0.00 0.00 1.61 0.00 0.00 K jcn_only_AD RpL15 chr3LHet + chr3LHet_2398018_2398127;chr3LHet_2397859_2398127;chr3LHet_2397925_2398127;chr3LHet_2397992_2398127;chr3LHet_2397841_2398127;chr3LHet_2398002_2398127;chr3LHet_2397820_2398127;chr3LHet_2398053_2398127 chr3LHet_2398060_2398127 chr3LHet_2398128_2398454;chr3LHet_2397802_2397819 3.88 10.81 9.72 3.76 15.62 13.04 16.48 3.49 7.04 9.38 17.14 7.02 14.29 9.38 5.64 11.76 3.51 14.55 7.35 16.67 20.51 1.17 3.57 4.35 9.09 3.19 3.70 0.86 0.00 1.79 7.81 0.31 0.34 4.57 2.13 0.00 4.00 NA 0.00 0.28 1.65 4.81 8.99 0.00 1.74 0.95 0.00 0.96 6.53 7.41 0.00 0.00 0.36 8.70 4.27 0.00 2.38 1.80 K alternative_acceptor Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16046111,I_chr3L_16057100_16057329 chr3L + chr3L_16055963_16056187 chr3L_16055963_16056184 chr3L_16055812_16055962;chr3L_16056188_16056265 21.43 22.88 21.24 25.93 19.10 21.43 18.52 20.95 23.61 23.00 23.28 22.68 21.88 16.85 19.49 23.57 23.23 22.70 16.79 22.65 25.23 19.67 23.50 18.75 25.81 20.91 21.92 22.22 21.86 20.89 22.38 27.36 19.53 25.15 20.69 21.24 21.05 19.71 21.29 21.50 22.90 21.00 23.60 21.88 15.44 20.12 20.54 22.92 23.00 19.35 19.86 24.59 18.37 20.73 23.20 17.65 20.00 19.93 K intron_retention CG5745 chr3R + chr3R_16930532_16930603 chr3R_16930531_16930532;chr3R_16930603_16930604 chr3R_16930308_16930531;chr3R_16930604_16930835 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 5.41 0.00 0.00 0.00 0.00 1.89 0.00 10.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Rip11,E_chrX_18532733_18533695,RI_chrX_18530353_18530870,RI_chrX_18544139_18544185 chrX - chrX_18531820_18533496 chrX_18531820_18532278 chrX_18531668_18531819;chrX_18533497_18534230 75.79 75.35 75.79 81.45 72.60 73.23 75.76 78.71 72.06 68.06 76.56 72.24 72.38 77.46 72.11 84.58 65.36 73.21 71.16 79.85 74.44 86.05 82.38 75.29 72.18 70.07 75.59 80.06 71.75 82.19 73.92 79.55 85.06 72.97 81.52 81.27 66.11 76.48 72.51 79.28 81.18 71.30 71.56 72.44 75.90 76.64 83.64 78.50 70.80 81.47 80.32 70.92 76.11 83.02 70.27 77.93 75.96 77.45 K jcn_only_AA tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_563485_565232;chr3R_563461_565232 chr3R_563503_565232 chr3R_565233_565290;chr3R_563195_563460 85.83 NA NA 100.00 NA NA 60.00 86.21 85.45 NA NA 86.36 NA NA 85.00 NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA 89.29 NA NA 70.97 NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA 87.80 NA NA NA NA NA 100.00 NA NA NA K jcn_only_AA CG17224,RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605 chr2L - chr2L_3018018_3018163;chr2L_3018082_3018163;chr2L_3018038_3018163 chr2L_3018025_3018163 chr2L_3018164_3018185;chr2L_3017982_3018017 3.70 NA NA 3.70 NA 10.00 0.00 0.00 1.89 NA NA 0.00 NA 4.76 NA 0.00 NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA 2.17 12.00 NA 8.00 NA NA NA NA NA 6.38 4.00 3.57 NA 2.86 4.17 2.56 NA 5.00 6.82 NA NA NA NA NA 4.76 NA NA 9.09 K jcn_only_AA Pitslre,I_chr3L_20764965_20765781,I_chr3L_20764965_20766192,I_chr3L_20764965_20766212,I_chr3L_20766064_20766192,I_chr3L_20766064_20766215,RI_chr3L_20766064_20766893,I_chr3L_20766311_20766664,I_chr3L_20766311_20766893,I_chr3L_20766773_20766893 chr3L + chr3L_20764965_20765704;chr3L_20764965_20766893 chr3L_20764965_20766215 chr3L_20764896_20764964;chr3L_20766894_20766993 1.69 0.00 NA NA NA NA NA 13.64 3.64 0.00 NA 2.94 NA NA NA 8.70 NA NA NA 8.82 NA 2.70 3.03 1.69 0.00 NA 2.13 1.28 0.00 0.00 6.45 0.00 0.00 NA 2.94 0.00 1.22 4.48 4.41 3.85 0.00 2.38 NA 2.13 6.25 0.00 2.94 0.00 0.00 2.56 2.82 0.00 0.00 0.00 0.00 0.00 0.00 4.55 K intron_retention CG4250,I_chr2R_18551419_18551493,E_chr2R_18551558_18551756 chr2R + chr2R_18551419_18551493 chr2R_18551418_18551419;chr2R_18551493_18551494 chr2R_18551319_18551418;chr2R_18551494_18551557 81.66 NA NA 90.91 NA NA NA 91.67 72.73 NA NA 83.33 NA NA 42.86 88.89 NA 88.89 NA 62.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 87.50 NA 93.33 NA NA NA NA NA 60.00 80.00 NA NA NA NA NA NA NA 77.78 53.85 K alternative_acceptor CG8485,I_chr2R_10126696_10126750 chr2R - chr2R_10126690_10126955 chr2R_10126696_10126955 chr2R_10126956_10127190;chr2R_10126596_10126689 96.67 100.00 95.65 96.43 93.75 100.00 96.00 96.15 97.14 92.31 100.00 97.30 100.00 92.31 95.00 96.00 91.67 100.00 100.00 97.83 91.67 96.77 97.62 96.55 96.00 100.00 95.24 100.00 100.00 100.00 100.00 94.74 97.44 96.00 96.55 96.67 96.77 95.45 96.77 96.30 100.00 97.37 94.12 100.00 100.00 100.00 93.33 96.30 96.88 100.00 94.12 96.00 91.67 94.44 86.36 100.00 86.67 100.00 K alternative_donor exba,I_chr3R_1425087_1425925,I_chr3R_1425813_1426009,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1425890_1426009;chr3R_1425890_1426209 chr3R_1425890_1426125 chr3R_1425790_1425889;chr3R_1426210_1426225 12.50 12.50 10.00 7.14 16.67 12.50 18.75 5.26 7.69 28.57 16.67 16.67 14.29 8.33 11.11 3.70 12.50 18.18 7.14 5.56 20.00 NA 6.67 10.00 16.67 12.50 14.29 20.00 30.00 14.29 15.38 30.00 NA 16.67 10.00 14.29 16.67 20.00 25.00 13.33 33.33 11.11 8.33 7.14 33.33 5.88 16.67 20.00 3.85 11.11 8.33 12.50 0.00 25.00 11.11 12.50 25.00 12.50 K intron_retention CdGAPr,fs(2)ltoPP43,E_chr2L_19794633_19794811 chr2L - chr2L_19794309_19794582 chr2L_19794308_19794309;chr2L_19794582_19794583 chr2L_19793486_19794308;chr2L_19794583_19794632 95.35 90.00 100.00 97.09 96.55 96.43 96.43 93.85 94.51 96.67 90.91 94.52 100.00 95.35 97.44 90.48 97.14 96.67 94.74 96.61 94.74 93.51 93.62 97.30 100.00 96.97 95.92 90.70 93.94 98.33 93.94 94.94 95.39 95.77 96.77 97.56 94.00 96.43 96.77 90.28 94.29 97.30 93.75 93.02 90.79 87.84 97.30 95.19 98.59 90.24 88.89 96.00 95.65 93.10 95.24 89.19 96.00 95.24 K intron_retention CG5168 chr2L + chr2L_10424671_10424733 chr2L_10424670_10424671;chr2L_10424733_10424734 chr2L_10424544_10424670;chr2L_10424734_10424930 0.00 0.00 0.00 0.92 0.00 0.00 0.33 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Galpha49B,I_chr2R_8501587_8501648,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8500357_8503411;chr2R_8500390_8503411 chr2R_8500357_8501071,chr2R_8500390_8501071;chr2R_8501851_8503411 chr2R_8501072_8501850 chr2R_8500333_8500356;chr2R_8503412_8503586 45.93 45.00 51.28 35.16 27.78 37.14 53.25 53.06 45.93 43.48 40.48 83.33 52.00 50.82 43.75 61.22 72.22 53.57 51.79 39.33 48.57 57.14 39.71 42.86 41.18 54.76 41.07 25.00 40.62 27.45 50.00 57.14 38.10 54.84 60.61 61.29 26.92 35.29 36.36 53.12 63.16 55.26 58.14 25.97 47.06 51.22 40.91 55.77 52.69 34.62 43.86 54.05 42.86 40.00 35.94 38.46 41.67 68.18 K jcn_only_AD tws,I_chr3R_5960899_5960978,CG6241 chr3R - chr3R_5959310_5960163;chr3R_5959310_5960101;chr3R_5959310_5959789;chr3R_5959310_5960049;chr3R_5959310_5960182;chr3R_5959310_5960026;chr3R_5959310_5960158;chr3R_5959310_5959679 chr3R_5959310_5960041 chr3R_5958937_5959309;chr3R_5960183_5960224 3.16 0.00 0.00 2.38 0.00 2.86 2.86 3.70 1.65 19.05 12.50 1.30 1.72 3.70 6.38 4.59 2.17 3.45 6.15 3.30 3.23 0.00 6.82 6.90 3.70 0.00 0.00 0.00 9.68 9.09 1.85 NA 0.00 3.16 9.09 0.00 NA NA NA 0.00 0.00 0.00 3.64 6.00 0.00 8.82 NA 7.69 5.38 3.85 7.50 0.00 NA NA 2.44 0.00 NA 11.11 K intron_retention CG31855 chr2L + chr2L_13369324_13369385 chr2L_13369323_13369324;chr2L_13369385_13369386 chr2L_13369210_13369323;chr2L_13369386_13370334 17.33 15.79 19.51 30.49 33.33 21.43 21.92 25.00 21.79 25.00 24.14 18.28 5.26 16.22 7.32 15.38 17.24 15.62 21.21 20.00 14.29 10.91 28.00 22.22 30.00 35.29 42.22 37.93 48.15 8.33 15.22 11.11 28.00 13.89 10.64 15.00 6.06 20.00 18.18 16.28 38.10 20.83 13.51 20.00 0.00 14.08 16.67 15.79 17.33 16.36 14.71 25.00 13.46 21.54 20.45 17.24 3.66 15.79 K intron_retention CG33558,I_chr2R_2813804_2817753,I_chr2R_2814327_2817753,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2817604_2817753 chr2R_2817603_2817604;chr2R_2817753_2817754 chr2R_2817460_2817603;chr2R_2817754_2817762 0.99 0.00 7.69 4.76 NA 0.00 0.00 19.05 7.41 0.00 0.00 5.56 NA 9.09 7.41 9.09 0.00 NA 14.29 7.14 NA 0.00 3.19 2.25 0.00 NA 2.56 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.00 0.00 3.37 1.49 3.39 NA 1.47 0.00 0.99 1.75 1.72 5.77 0.00 2.00 8.33 0.00 0.00 0.00 1.45 2.27 0.00 K intron_retention mld chr3R + chr3R_20415155_20416293 chr3R_20415154_20415155;chr3R_20416293_20416294 chr3R_20415118_20415154;chr3R_20416294_20417143 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA NA NA K alternative_acceptor Vha44,I_chr2R_12220926_12223455 chr2R - chr2R_12216156_12216921 chr2R_12216420_12216921 chr2R_12216922_12217419;chr2R_12216058_12216155 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA N alternative_donor I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545799_17545850;chr2R_17545767_17545850;chr2R_17545615_17545850;chr2R_17545781_17545850;chr2R_17545686_17545850 chr2R_17545690_17545850 chr2R_17545851_17545985;chr2R_17545613_17545614 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor I_chr2R_13460029_13460240,Dcr-2,I_chr2R_13466001_13466061,I_chr2R_13466001_13466072 chr2R - chr2R_13466001_13466058;chr2R_13466001_13466061 chr2R_13466001_13466072 chr2R_13465901_13466000;chr2R_13466073_13466161 7.69 0.00 3.70 17.39 0.00 6.67 13.89 2.78 2.04 9.09 6.67 2.70 5.00 5.56 0.00 12.90 8.33 6.25 5.26 8.11 0.00 11.54 0.00 13.64 8.33 10.53 13.33 10.53 6.67 12.50 15.62 20.00 6.67 0.00 7.69 0.00 0.00 7.69 6.67 10.00 14.29 12.20 11.11 4.76 0.00 21.43 9.09 9.09 2.63 7.69 0.00 5.56 0.00 14.29 11.11 12.50 0.00 8.33 K jcn_only_AA Chro,RI_chr3L_22871119_22871250,I_chr3L_22871351_22871733 chr3L - chr3L_22869485_22869556 chr3L_22869491_22869556 chr3L_22869557_22870488;chr3L_22868224_22869484 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 98.31 100.00 100.00 100.00 100.00 98.11 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.62 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 K jcn_only_AA pgant5,I_chr2L_5078418_5078461,I_chr2L_5079575_5093241 chr2L - chr2L_5078401_5078461 chr2L_5078418_5078461 chr2L_5078462_5078561;chr2L_5078318_5078400 0.82 0.00 0.00 4.13 1.39 0.00 2.13 0.60 1.50 1.59 0.00 1.12 2.11 2.02 0.82 0.69 0.00 3.09 0.98 0.54 0.00 1.11 0.00 1.74 6.41 1.49 0.00 3.33 0.00 1.10 2.53 1.75 0.69 0.00 0.96 0.00 0.00 1.12 1.38 1.18 0.00 0.53 0.00 0.00 1.56 2.04 1.64 0.00 0.52 7.69 0.00 0.00 0.00 0.00 0.95 0.00 0.00 1.22 K intron_retention Amun,I_chrX_11607839_11608272,I_chrX_11607842_11608105,I_chrX_11607842_11608125,RI_chrX_11607842_11608272 chrX - chrX_11607839_11608507 chrX_11607838_11607839;chrX_11608507_11608508 chrX_11607788_11607838;chrX_11608508_11608588 9.19 NA NA NA NA NA NA NA 5.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.88 NA NA NA NA 20.00 NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA K intron_retention Dystrophin,noncoding_17759,I_chr3R_15289404_15290179 chr3R + chr3R_15289362_15290221 chr3R_15289361_15289362;chr3R_15290221_15290222 chr3R_15289350_15289361;chr3R_15290222_15290279 90.91 NA NA 91.67 NA NA 100.00 93.33 84.21 NA NA 100.00 90.00 88.89 NA 93.75 100.00 NA NA 84.62 NA NA 88.89 NA NA NA NA NA NA NA 90.91 NA 88.89 75.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 91.67 NA NA NA NA NA 90.91 NA NA NA K intron_retention l(1)G0230 chrX + chrX_10107805_10108131 chrX_10107804_10107805;chrX_10108131_10108132 chrX_10107593_10107804;chrX_10108132_10108340 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette Caps,I_chr4_1249410_1250827,I_chr4_1250965_1254496,I_chr4_1252217_1252262 chr4 + chr4_1250965_1254496 chr4_1250965_1252028;chr4_1252217_1252272;chr4_1252563_1254496 chr4_1252029_1252216;chr4_1252273_1252562 chr4_1250870_1250964;chr4_1254497_1254507 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 K intron_retention RI_chr3R_19759126_19759198,Gdh,E_chr3R_19762765_19768309 chr3R - chr3R_19764278_19768315 chr3R_19764277_19764278;chr3R_19768315_19768316 chr3R_19764176_19764277;chr3R_19768316_19768409 34.78 21.43 53.33 26.83 45.45 50.00 39.13 24.53 37.93 31.03 37.50 36.54 25.00 52.63 48.39 45.45 36.00 27.59 45.45 32.14 50.00 31.91 37.04 31.25 25.93 31.25 34.78 60.00 11.11 62.50 34.62 15.38 47.89 44.44 63.64 23.26 32.43 21.74 27.78 39.02 41.67 40.98 35.71 11.43 24.00 33.33 39.13 68.42 42.55 13.33 28.57 30.77 29.41 37.50 26.92 20.00 27.27 65.38 K alternative_acceptor loj,F_chr3L_6089225_6089305 chr3L + chr3L_6088118_6088212 chr3L_6088118_6088192 chr3L_6088112_6088117;chr3L_6088213_6088443 80.00 NA NA 71.43 NA NA 87.50 38.46 83.33 NA NA 90.00 NA NA NA 80.00 NA NA 60.00 85.71 NA NA NA NA NA 87.50 NA NA NA NA NA NA NA 63.64 NA NA NA NA NA 100.00 NA 53.33 NA NA 62.50 87.50 NA 100.00 55.56 NA NA NA NA NA 50.00 NA NA NA K intron_retention Rm62 chr3R - chr3R_1830849_1830927 chr3R_1830848_1830849;chr3R_1830927_1830928 chr3R_1829739_1830848;chr3R_1830928_1831019 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 2.27 0.00 NA 4.76 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.45 NA NA 1.72 1.52 0.00 NA 5.77 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG4589,I_chr2R_20402394_20402462,I_chr2R_20402394_20402706 chr2R - chr2R_20400695_20402753 chr2R_20400695_20402058;chr2R_20402394_20402753 chr2R_20402059_20402393 chr2R_20398382_20400694;chr2R_20402754_20402806 100.00 100.00 100.00 82.93 96.00 100.00 95.89 94.12 100.00 100.00 100.00 97.65 100.00 100.00 97.83 94.64 100.00 88.24 100.00 100.00 96.43 100.00 100.00 100.00 100.00 97.73 100.00 98.36 100.00 100.00 98.25 100.00 98.53 98.61 97.14 100.00 100.00 100.00 100.00 100.00 97.96 98.70 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 K alternative_donor cryptocephal,noncoding_4181,I_chr2L_21311307_21311752,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21311033_21311752;chr2L_21311307_21311752;chr2L_21311532_21311752 chr2L_21311215_21311752 chr2L_21311753_21311852;chr2L_21310948_21311032 0.23 0.00 0.33 0.06 0.00 0.00 0.16 0.12 0.00 0.00 0.28 0.08 0.00 0.00 0.00 0.37 0.00 0.00 0.23 0.42 0.24 0.00 0.00 0.30 0.33 0.00 0.25 2.03 0.33 0.94 0.00 0.45 0.58 0.14 0.00 0.37 0.43 0.00 1.52 0.92 0.00 0.09 0.00 0.24 1.16 0.41 0.00 0.24 0.24 0.30 0.91 0.00 0.56 0.43 0.00 0.33 0.29 0.00 K intron_retention RI_chr3R_7061265_7061322,CG31388 chr3R + chr3R_7063708_7063774 chr3R_7063707_7063708;chr3R_7063774_7063775 chr3R_7063536_7063707;chr3R_7063775_7064323 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA 44.44 NA NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 NA 0.00 NA NA NA NA NA 0.00 0.00 K alternative_acceptor mod(mdg4),EI_chr3R_17202755_17203009,REI_chr3R_17202848_17203009,EI_chr3R_17202924_17203009 chr3R - chr3R_17202799_17203009 chr3R_17202924_17203009 chr3R_17203010_17203090;chr3R_17202748_17202798 0.00 2.38 0.00 1.56 0.00 0.00 3.64 0.00 2.35 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 1.68 0.00 1.12 0.87 1.25 2.70 0.00 0.00 0.00 5.56 0.00 1.67 0.00 0.00 1.52 2.00 0.00 0.00 1.39 4.44 1.39 0.00 1.45 5.88 1.23 0.00 3.23 0.00 0.00 1.98 0.00 2.70 0.91 2.56 2.33 0.00 0.00 2.38 0.00 K intron_retention CG7139,I_chr3L_22062296_22063867,I_chr3L_22063306_22063867 chr3L - chr3L_22063263_22063867 chr3L_22063262_22063263;chr3L_22063867_22063868 chr3L_22063206_22063262;chr3L_22063868_22063967 0.00 0.00 5.26 0.00 0.00 NA 0.00 5.00 0.00 7.41 NA 13.79 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 4.35 8.00 0.00 0.00 4.35 9.09 0.00 0.00 0.00 10.00 4.17 0.00 0.00 0.00 7.41 4.76 0.00 5.33 0.00 2.94 5.88 2.86 0.00 0.00 0.00 1.67 3.23 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention mu2,I_chr3L_1945373_1945436,I_chr3L_1945382_1945647 chr3L - chr3L_1945382_1945436 chr3L_1945381_1945382;chr3L_1945436_1945437 chr3L_1945282_1945381;chr3L_1945437_1945528 0.00 0.00 0.00 5.71 NA 0.00 8.33 2.63 0.00 NA NA 0.00 0.00 NA 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 15.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 K intron_retention RpLP0 chr3L + chr3L_22069237_22069347 chr3L_22069236_22069237;chr3L_22069347_22069348 chr3L_22069220_22069236;chr3L_22069348_22069440 0.04 0.09 0.05 0.12 0.00 0.00 0.16 0.06 0.00 0.00 0.00 0.05 0.00 0.12 0.15 0.11 0.20 0.10 0.08 0.04 0.00 0.27 0.00 0.48 0.16 0.14 0.36 1.88 0.80 0.00 0.23 0.00 0.00 0.03 0.00 0.45 0.22 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.28 0.00 0.00 0.12 0.11 0.00 0.16 0.00 0.00 0.00 0.00 0.12 0.48 K alternative_donor Taz,I_chr2R_8641633_8641971,I_chr2R_8648027_8648303 chr2R - chr2R_8640859_8640932 chr2R_8640859_8640926 chr2R_8640618_8640858;chr2R_8640933_8641321 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K jcn_only_AD Hr39,I_chr2L_21256047_21256260 chr2L + chr2L_21237347_21238280;chr2L_21237385_21238280;chr2L_21237421_21238280;chr2L_21237364_21238280;chr2L_21237397_21238280 chr2L_21237405_21238280 chr2L_21238281_21238529;chr2L_21237247_21237346 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 5.71 4.35 NA NA 0.00 NA NA NA 2.22 NA NA 0.00 0.00 NA NA 3.12 NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K jcn_only_AD CG9836,I_chr3R_4654041_4664113,I_chr3R_4749124_4756437 chr3R - chr3R_4648792_4648970;chr3R_4648792_4648989 chr3R_4648792_4648982 chr3R_4648564_4648791;chr3R_4648990_4649023 98.00 96.07 98.86 97.95 97.62 98.57 98.06 96.91 96.99 98.21 95.58 97.82 98.63 97.78 98.70 97.71 98.63 95.80 95.85 95.57 98.40 98.00 97.53 97.12 98.69 98.06 96.14 95.15 96.35 98.37 97.75 96.76 100.00 98.76 96.12 97.24 98.95 98.65 98.87 98.40 97.11 97.71 98.56 98.98 98.00 99.38 96.01 98.64 97.73 97.73 97.77 98.10 98.26 99.54 97.86 99.27 99.72 98.45 K alternative_acceptor CG14133 chr3L - chr3L_11683229_11683325;chr3L_11683239_11683325 chr3L_11683209_11683325 chr3L_11683326_11683412;chr3L_11682731_11683208 54.20 69.23 40.00 22.22 38.46 56.25 53.33 66.67 41.46 NA 43.75 41.18 70.00 70.00 9.09 56.25 58.33 44.44 63.64 36.36 50.00 NA 60.00 NA NA 25.00 NA NA NA 53.85 57.89 60.00 43.75 50.00 NA NA 52.94 54.55 30.00 60.00 NA 36.11 42.86 66.67 38.46 56.25 69.23 66.67 40.91 66.67 56.25 NA 81.25 50.00 41.18 60.00 70.83 65.38 K jcn_only_AA maf-S,CG11110 chr2R + chr2R_16528624_16528673;chr2R_16528624_16528685 chr2R_16528624_16528670 chr2R_16528563_16528623;chr2R_16528686_16529179 1.22 2.30 0.90 1.95 3.37 0.92 1.78 1.18 2.82 0.00 1.23 1.84 1.89 3.57 3.74 1.79 1.25 1.22 0.00 1.35 3.33 1.53 1.08 0.00 0.00 1.94 1.35 0.00 4.05 1.18 1.72 1.33 0.69 1.95 5.62 0.00 0.00 0.00 0.87 0.93 0.00 1.12 0.00 0.00 1.40 0.00 0.95 2.31 1.20 1.06 2.27 3.85 1.69 0.00 0.81 0.00 0.91 1.35 N alternative_acceptor CkIIalpha,I_chr3L_23092989_23093344,RI_chr3L_23094196_23095221 chr3L + chr3L_23092824_23093344;chr3L_23092824_23093319 chr3L_23092824_23092891 chr3L_23092680_23092823;chr3L_23093345_23093444 28.57 9.09 18.18 60.00 NA NA 52.63 20.00 24.00 NA NA 42.86 66.67 23.08 28.57 18.18 NA 37.50 18.18 36.36 NA NA 22.22 12.50 28.57 NA NA 33.33 NA NA 28.57 NA 28.57 28.57 14.29 40.00 NA NA NA 18.18 NA 21.43 33.33 28.57 NA NA NA NA 38.46 NA NA 16.67 NA NA 14.29 33.33 33.33 50.00 K intron_retention Pp2A-29B,I_chr2L_8367210_8367311,I_chr2L_8369561_8369715,RI_chr2L_8369761_8369827 chr2L + chr2L_8369031_8369715 chr2L_8369030_8369031;chr2L_8369715_8369716 chr2L_8368758_8369030;chr2L_8369716_8369760 0.79 0.47 1.32 0.70 0.00 0.93 0.67 0.79 0.67 0.00 0.70 1.62 1.18 1.32 1.18 2.51 0.00 0.00 0.00 1.01 0.78 0.81 0.60 1.37 0.61 0.00 0.96 2.36 0.00 1.39 1.53 0.77 3.26 1.22 0.76 1.34 1.05 0.96 1.22 0.80 0.77 0.97 1.99 0.73 1.83 1.94 0.87 0.00 0.78 0.61 1.02 0.00 0.00 0.59 1.10 0.00 0.00 0.00 K cassette CG3114,RI_chrX_168562_168685 chrX - chrX_165647_167215 chrX_165647_166589;chrX_166917_167215 chrX_166590_166916 chrX_165521_165646;chrX_167216_167420 44.44 29.41 46.67 30.77 50.00 35.71 14.29 25.00 51.72 87.50 18.18 41.67 22.22 40.00 35.00 60.00 25.00 41.67 55.56 53.12 35.71 45.45 52.38 42.86 30.00 50.00 50.00 56.25 58.82 52.63 53.85 46.15 75.00 44.00 35.71 60.00 48.15 61.54 36.36 48.28 22.22 51.72 83.33 57.14 42.86 53.85 42.86 66.67 42.86 30.00 43.75 44.44 33.33 30.00 50.00 50.00 42.86 43.48 K intron_retention CG12772 chrX + chrX_8571498_8571923 chrX_8571497_8571498;chrX_8571923_8571924 chrX_8571095_8571497;chrX_8571924_8573800 10.53 NA NA NA NA NA NA NA 0.00 NA NA 12.50 NA NA NA NA NA NA NA 10.53 NA 16.67 NA 6.25 NA NA 21.43 NA NA NA 36.36 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA K alternative_acceptor CG31033,RI_chr3R_25658089_25658914 chr3R - chr3R_25658089_25658914;chr3R_25658071_25658914 chr3R_25658095_25658914 chr3R_25658915_25659003;chr3R_25657989_25658070 12.12 6.82 11.76 36.84 13.64 9.09 35.90 7.46 12.99 18.52 6.67 11.90 18.18 12.20 10.53 29.17 15.15 10.53 7.69 9.88 13.89 14.29 18.18 5.66 20.00 31.43 17.31 10.81 12.82 10.87 14.29 10.42 14.06 13.24 8.89 37.50 13.89 8.70 11.48 6.67 19.61 11.00 12.50 10.42 15.09 9.64 10.81 7.32 15.91 11.63 12.12 14.29 9.09 11.76 10.91 7.50 12.24 12.15 K intron_retention CG1427,RI_chr3R_1427548_1427635 chr3R + chr3R_1427585_1427635 chr3R_1427584_1427585;chr3R_1427635_1427636 chr3R_1427482_1427584;chr3R_1427636_1427704 23.54 16.67 25.00 50.00 13.33 30.00 35.71 31.43 21.95 NA 50.00 26.92 19.05 25.00 44.00 28.57 22.73 6.67 12.50 28.26 14.29 17.65 30.23 19.05 30.77 33.33 37.04 35.71 20.00 26.32 56.10 24.00 22.22 23.08 25.00 59.09 29.03 20.00 18.92 16.42 41.67 18.18 20.00 22.73 13.33 25.64 20.00 37.84 25.00 25.93 16.13 19.05 10.53 16.67 21.43 18.18 20.69 40.00 K jcn_only_AA cmet chr2L - chr2L_11262421_11262485 chr2L_11262430_11262485 chr2L_11262486_11262560;chr2L_11262244_11262420 96.97 94.87 100.00 98.67 96.88 97.37 98.48 95.96 96.15 NA 97.56 96.97 100.00 97.56 91.49 97.56 95.35 95.74 95.06 99.19 95.45 100.00 100.00 100.00 NA 98.31 100.00 NA 96.77 94.87 94.55 94.29 98.41 95.20 96.67 100.00 93.94 96.67 96.15 98.00 97.22 100.00 100.00 100.00 95.12 93.48 97.92 96.61 99.15 95.74 100.00 100.00 100.00 NA 94.59 92.11 90.32 90.91 K multi_cassette CG31064,RI_chr3R_23056388_23064246,RI_chr3R_23059404_23062725,I_chr3R_23069667_23070365 chr3R - chr3R_23056388_23064246 chr3R_23056388_23058194;chr3R_23058598_23058656;chr3R_23058908_23058969;chr3R_23059404_23064246 chr3R_23058195_23058597;chr3R_23058657_23058907;chr3R_23058970_23059403 chr3R_23056292_23056387;chr3R_23064247_23064346 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 92.86 95.65 100.00 96.43 94.74 96.55 100.00 95.45 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 95.83 100.00 96.30 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 K intron_retention RI_chr2R_11577574_11577625,CG33460,CG33461,CG33462 chr2R + chr2R_11581816_11581879 chr2R_11581815_11581816;chr2R_11581879_11581880 chr2R_11581407_11581815;chr2R_11581880_11581922 0.72 0.00 0.87 1.12 0.00 1.32 1.35 0.95 0.76 0.00 0.00 1.61 0.72 0.80 0.00 0.63 0.30 0.00 1.19 0.33 0.00 0.00 0.57 1.27 0.00 1.37 1.15 0.00 4.92 1.87 2.01 0.00 3.03 1.23 0.00 2.44 0.76 0.00 0.00 0.00 3.08 0.50 0.00 0.00 0.00 1.27 0.00 2.04 1.23 0.81 0.00 0.00 0.74 0.88 0.61 0.00 1.75 2.88 K intron_retention Tequila chr3L + chr3L_9068967_9069119 chr3L_9068966_9068967;chr3L_9069119_9069120 chr3L_9068945_9068966;chr3L_9069120_9069354 0.00 0.00 0.00 11.76 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 8.70 0.00 0.00 0.00 1.47 0.00 NA 0.00 7.14 0.00 NA 5.88 NA NA 0.00 NA NA NA 0.00 NA 18.52 1.85 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K alternative_acceptor CG14881 chr3R + chr3R_12260796_12260857 chr3R_12260796_12260855 chr3R_12260742_12260795;chr3R_12260858_12260924 93.33 93.75 93.33 95.45 88.89 92.31 93.33 100.00 96.30 100.00 100.00 96.30 92.86 100.00 100.00 94.44 92.31 92.31 91.67 86.49 87.50 100.00 88.24 100.00 94.44 93.33 100.00 80.00 94.74 92.86 89.66 100.00 96.77 80.95 93.75 88.89 88.24 100.00 88.00 88.37 94.44 92.86 100.00 94.12 94.12 100.00 86.36 86.96 90.48 92.31 85.00 90.00 93.33 94.44 87.50 93.33 86.96 94.44 N alternative_donor CG14647 chr3R + chr3R_226861_227075 chr3R_227015_227075 chr3R_227076_227207;chr3R_226212_226860 2.56 2.70 1.69 4.65 2.56 0.00 1.43 3.03 2.04 0.00 0.00 6.25 2.38 3.85 3.17 1.03 2.38 0.00 3.28 2.05 1.92 8.47 2.63 2.38 7.41 0.00 1.92 2.56 4.49 3.39 4.62 2.27 4.00 2.56 2.70 3.85 2.38 2.22 1.37 4.81 3.33 2.17 2.27 2.86 2.27 3.42 2.78 0.65 3.12 4.65 3.23 2.94 3.45 2.94 0.00 4.17 0.00 2.25 K intron_retention RpS4,snoRNA:Psi28S-3327c,Syx13,RI_chr3L_13037959_13038017,CG11279 chr3L + chr3L_13036438_13036673 chr3L_13036437_13036438;chr3L_13036673_13036674 chr3L_13036266_13036437;chr3L_13036674_13037324 0.02 0.05 0.04 0.01 0.02 0.06 0.02 0.04 0.07 0.07 0.04 0.03 0.00 0.09 0.03 0.02 0.00 0.05 0.00 0.04 0.02 0.01 0.03 0.00 0.02 0.00 0.10 0.19 0.00 0.00 0.00 0.02 0.00 0.03 0.00 0.00 0.00 0.00 0.05 0.02 0.00 0.06 0.00 0.00 0.03 0.00 0.02 0.03 0.02 0.00 0.06 0.02 0.02 0.03 0.03 0.00 0.03 0.03 K alternative_last_exon mav,RI_chr4_645290_646129 chr4 - chr4_645290_646129 chr4_645568_646129 chr4_643677_645289 chr4_645398_645567 chr4_646130_646229 66.67 75.00 77.78 78.57 60.00 50.00 75.76 94.12 84.00 50.00 75.00 80.00 53.33 87.50 78.57 83.33 66.67 58.33 80.00 77.27 53.85 71.43 72.73 50.00 50.00 80.00 54.55 50.00 66.67 66.67 81.82 44.44 66.67 90.00 42.86 80.00 37.50 57.14 40.00 63.64 40.00 44.44 84.62 46.67 50.00 73.33 57.14 66.67 75.00 50.00 80.95 71.43 40.00 60.00 80.00 75.00 42.86 54.55 K intron_retention RpS25,I_chr3R_7041333_7041414,I_chr3R_7041347_7041413,I_chr3R_7041347_7041556,RI_chr3R_7044164_7044221 chr3R - chr3R_7041333_7041414 chr3R_7041332_7041333;chr3R_7041414_7041415 chr3R_7041267_7041332;chr3R_7041415_7041483 99.91 99.87 99.85 100.00 99.58 100.00 100.00 100.00 99.90 100.00 99.77 99.91 100.00 100.00 100.00 100.00 100.00 99.84 100.00 100.00 99.81 99.49 100.00 99.86 99.80 99.83 99.91 88.60 99.74 100.00 99.84 99.84 99.78 99.92 100.00 99.86 99.49 99.82 99.91 100.00 99.78 100.00 99.81 100.00 100.00 99.91 100.00 99.27 99.86 99.87 100.00 100.00 99.91 100.00 99.85 99.88 99.85 99.89 K jcn_only_AA CG9172,eIF5,EI_chrX_15885411_15885854 chrX - chrX_15880717_15880770 chrX_15880720_15880770 chrX_15880771_15880778;chrX_15879877_15880716 43.41 38.16 43.96 43.84 39.51 32.63 48.97 49.70 40.84 37.50 38.54 42.31 34.25 46.05 50.50 42.11 50.60 45.00 44.79 47.92 44.59 33.77 37.31 42.65 29.63 51.22 44.44 51.28 33.96 48.94 53.09 31.67 35.71 43.33 49.02 50.00 53.95 50.00 38.03 35.77 38.24 44.13 41.03 40.00 44.96 46.51 43.94 45.12 46.79 38.33 47.27 38.46 31.15 48.48 40.88 34.67 35.71 43.41 K jcn_only_AA CG8121,RI_chr3R_5183458_5183705 chr3R + chr3R_5161975_5162204 chr3R_5161975_5162041 chr3R_5161880_5161974;chr3R_5162205_5162441 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.94 0.00 5.26 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.38 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 2.41 NA 0.00 0.00 1.96 0.00 1.69 0.00 4.17 0.00 1.69 1.22 0.00 0.00 0.00 0.00 1.67 0.00 0.00 K intron_retention Cep135,RI_chr3L_15120510_15120565 chr3L + chr3L_15120385_15120565 chr3L_15120384_15120385;chr3L_15120565_15120566 chr3L_15120117_15120384;chr3L_15120566_15120665 6.67 NA 0.00 13.16 NA 0.00 15.00 10.71 6.45 NA NA 8.33 NA 5.56 6.67 0.00 0.00 NA 0.00 0.00 NA 14.29 12.50 13.33 NA 0.00 18.75 NA 10.00 11.76 0.00 8.33 9.09 12.50 NA 7.69 0.00 NA NA 0.00 7.41 6.90 NA 6.67 0.00 6.25 NA 0.00 0.00 9.09 0.00 NA NA NA 7.41 9.09 NA 0.00 K intron_retention CG3160,CG3149 chrX - chrX_5582203_5582254 chrX_5582202_5582203;chrX_5582254_5582255 chrX_5581958_5582202;chrX_5582255_5582437 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 4.17 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 4.55 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA NA K jcn_only_AD CG15321,I_chrX_9578185_9579504,I_chrX_9578185_9579582,I_chrX_9578185_9580671,RI_chrX_9578185_9581011 chrX - chrX_9578185_9579504;chrX_9578185_9579582 chrX_9578185_9579535 chrX_9578085_9578184;chrX_9579583_9579597 90.00 NA NA NA NA NA NA 86.67 85.00 NA NA 100.00 NA 88.46 NA 95.65 NA NA NA 87.50 NA NA 86.36 NA NA NA NA NA 87.50 86.96 90.00 NA 100.00 NA NA NA NA NA NA 97.62 NA 92.00 NA 100.00 NA NA NA 87.34 90.91 NA 90.00 NA NA NA NA NA NA 100.00 N jcn_only_AA CG14939,RI_chr2L_11812683_11813150 chr2L - chr2L_11811446_11811593 chr2L_11811500_11811593 chr2L_11811594_11812682;chr2L_11810098_11811445 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 86.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention mthl10 chr3L - chr3L_333641_333941 chr3L_333640_333641;chr3L_333941_333942 chr3L_333522_333640;chr3L_333942_334119 5.77 2.74 6.58 13.16 4.00 6.35 12.24 7.14 6.62 0.00 7.50 5.61 11.76 5.77 5.97 5.88 3.85 3.39 10.94 5.83 6.52 8.70 6.76 5.00 6.67 10.00 5.56 19.05 15.79 7.32 3.30 5.41 8.33 5.06 10.00 6.98 9.72 5.36 5.66 6.06 0.00 4.55 3.92 2.74 3.39 9.62 0.00 5.00 7.96 4.17 5.33 9.68 0.00 0.00 5.33 3.51 3.17 2.94 K intron_retention wapl,Cyp4d1 chrX - chrX_2045880_2045949 chrX_2045879_2045880;chrX_2045949_2045950 chrX_2045710_2045879;chrX_2045950_2046792 2.78 2.50 5.71 2.86 0.00 6.67 5.26 5.71 8.33 0.00 9.09 5.41 7.41 7.69 2.56 7.14 0.00 6.67 0.00 3.45 10.71 0.00 4.44 3.85 0.00 0.00 6.98 8.00 0.00 5.41 2.78 0.00 3.57 4.08 0.00 0.00 5.48 0.00 1.82 0.00 0.00 2.50 3.33 0.00 0.00 0.00 0.00 11.76 5.56 0.00 6.82 0.00 0.00 6.25 0.00 0.00 3.45 0.00 K intron_retention CG8173,I_chrX_17602681_17603175 chrX - chrX_17602681_17603214 chrX_17602680_17602681;chrX_17603214_17603215 chrX_17602581_17602680;chrX_17603215_17603275 4.35 4.84 7.27 5.63 3.77 2.13 2.38 3.51 4.80 2.56 5.88 5.66 2.70 5.26 0.00 5.68 0.00 1.79 3.77 6.19 4.17 50.00 8.82 4.11 0.00 0.00 10.45 0.00 11.76 6.12 6.98 0.00 5.56 5.63 5.08 4.00 7.14 5.36 6.67 0.00 9.38 3.23 0.00 4.35 5.00 3.92 6.35 2.63 6.67 3.77 3.95 0.00 2.56 6.25 3.85 6.25 3.85 4.55 K jcn_only_AD vir-1,I_chr2L_12404178_12407208,RE_chr2L_12409622_12421640,noncoding_2764,I_chr2L_12421830_12423260 chr2L - chr2L_12421830_12423322;chr2L_12421830_12423260;chr2L_12421830_12423278 chr2L_12421830_12423333 chr2L_12421816_12421829;chr2L_12423334_12423360 3.72 5.35 2.53 4.52 4.12 3.15 4.74 5.19 5.96 3.15 7.66 3.50 4.75 6.19 2.71 2.75 6.86 2.73 4.83 2.98 6.05 4.57 4.14 2.85 3.56 3.37 4.85 4.64 4.12 4.40 2.80 2.97 3.02 4.26 2.57 7.08 5.18 3.40 1.56 4.79 3.72 4.01 5.59 3.47 3.06 2.93 3.18 3.13 3.51 4.24 2.99 4.90 3.52 3.52 2.90 4.64 4.09 2.87 K cassette SCAR,E_chr2L_10978982_10979632 chr2L + chr2L_10978707_10980444 chr2L_10978707_10979632;chr2L_10979714_10980444 chr2L_10979633_10979713 chr2L_10977898_10978706;chr2L_10980445_10981112 0.00 0.00 0.63 0.56 0.00 0.80 0.00 0.55 0.00 0.00 0.87 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.51 0.00 0.00 1.03 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.63 0.00 0.00 1.02 0.00 1.04 0.00 0.00 0.74 0.00 0.80 0.49 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.67 0.00 K intron_retention Cks85A chr3R - chr3R_4541538_4542192 chr3R_4541537_4541538;chr3R_4542192_4542193 chr3R_4541461_4541537;chr3R_4542193_4542261 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 97.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 95.83 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG11753 chr3R + chr3R_4479008_4479080 chr3R_4479008_4479077 chr3R_4478941_4479007;chr3R_4479081_4479145 97.92 100.00 97.87 100.00 98.11 97.37 98.31 100.00 98.99 100.00 95.56 97.50 97.37 96.67 97.67 97.73 97.06 97.56 97.62 98.77 97.73 97.62 94.52 98.39 100.00 97.92 98.51 96.88 97.83 100.00 100.00 97.56 98.39 100.00 91.89 100.00 95.56 98.41 98.77 98.46 97.14 98.53 96.67 96.00 96.05 98.41 98.33 97.50 100.00 97.06 98.31 97.37 97.22 98.33 95.56 98.75 100.00 98.44 N jcn_only_AA klar,I_chr3L_462559_472609,RI_chr3L_517594_539898 chr3L - chr3L_451328_452837 chr3L_451772_452837 chr3L_452838_453488;chr3L_451127_451327 94.96 96.30 95.45 100.00 94.70 95.29 91.28 93.55 94.74 100.00 93.55 96.23 96.25 96.60 96.44 100.00 95.81 89.42 94.97 100.00 100.00 83.96 94.19 93.77 90.31 95.45 95.74 89.73 94.79 91.31 94.09 91.76 89.14 95.15 94.85 96.55 95.17 94.96 94.81 92.39 93.39 94.44 95.73 94.57 93.53 94.61 96.60 91.20 95.33 96.17 92.38 91.42 96.02 97.32 93.49 96.32 97.94 95.51 K alternative_acceptor Amun,I_chrX_11607839_11608272,I_chrX_11607842_11608105,I_chrX_11607842_11608125,RI_chrX_11607842_11608272 chrX - chrX_11607839_11608590 chrX_11607842_11608590 chrX_11608591_11608810;chrX_11607788_11607838 57.09 NA 42.86 60.00 66.67 50.00 53.33 52.94 54.05 NA 55.56 50.00 NA 50.00 40.00 63.64 NA NA 42.86 64.71 NA 58.62 NA NA NA NA NA NA 70.00 48.48 66.67 58.82 44.44 58.82 69.23 55.56 46.67 NA NA 60.53 50.00 66.67 NA 63.16 69.23 50.00 NA 59.46 55.00 60.00 NA NA 61.54 NA 66.67 NA NA 51.58 K intron_retention CG18317,RI_chr2L_1718492_1723881,I_chr2L_1718904_1718995,RI_chr2L_1718904_1724234 chr2L - chr2L_1718492_1718739 chr2L_1718491_1718492;chr2L_1718739_1718740 chr2L_1718421_1718491;chr2L_1718740_1718903 94.44 92.59 86.67 96.30 100.00 96.15 90.00 90.62 91.30 97.14 95.24 95.92 100.00 100.00 96.15 100.00 100.00 100.00 100.00 97.10 94.74 86.00 95.12 88.89 92.86 95.65 93.75 96.67 86.76 86.27 85.71 97.44 93.65 95.00 82.14 87.18 98.55 91.89 94.83 84.93 94.44 87.93 92.31 94.55 91.84 89.58 96.43 92.52 97.50 91.30 93.94 93.75 94.74 90.48 96.15 94.74 92.00 94.29 K intron_retention Ada2b,RI_chr3R_4068335_4068401 chr3R - chr3R_4063905_4064452 chr3R_4063904_4063905;chr3R_4064452_4064453 chr3R_4063825_4063904;chr3R_4064453_4065328 30.00 26.67 32.14 21.05 26.67 28.57 22.22 37.04 37.25 30.43 30.00 45.71 53.33 31.82 31.58 40.91 33.33 16.67 40.00 22.64 25.00 38.81 21.74 20.00 29.17 35.29 28.00 38.89 26.53 28.57 30.00 30.56 30.36 16.67 40.00 35.90 26.32 29.03 20.37 26.32 41.67 40.48 33.33 23.68 33.33 21.57 29.17 26.42 37.50 25.00 22.58 12.00 22.73 31.03 34.62 33.33 17.65 41.94 K alternative_acceptor CG10747,RI_chr2L_20090945_20090997 chr2L - chr2L_20090940_20090997 chr2L_20090945_20090997 chr2L_20090998_20091097;chr2L_20090845_20090939 15.38 7.69 NA 15.79 NA NA 15.38 9.09 26.32 NA NA 15.00 NA NA 7.69 9.52 NA 25.00 NA 12.50 15.38 NA 0.00 NA NA NA 25.00 NA NA NA 27.78 NA NA 14.29 NA NA NA NA 25.00 NA NA 17.39 NA NA NA NA NA NA 12.50 20.00 25.00 16.67 NA NA 13.33 NA NA NA K intron_retention Tpi chr3R - chr3R_25959171_25959231 chr3R_25959170_25959171;chr3R_25959231_25959232 chr3R_25958684_25959170;chr3R_25959232_25959816 0.00 0.23 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.11 0.00 0.00 0.00 0.67 0.13 0.00 0.24 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.20 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 K intron_retention MEP-1,CG42245,noncoding_10195,CG1143 chr3L + chr3L_2636002_2637067 chr3L_2636001_2636002;chr3L_2637067_2637068 chr3L_2635863_2636001;chr3L_2637068_2637217 10.91 11.76 7.69 8.96 13.89 17.65 21.67 12.33 15.08 12.00 11.76 8.70 13.64 12.20 15.38 10.91 16.28 3.85 8.51 6.06 6.67 40.00 10.61 10.64 26.32 9.68 15.38 31.71 10.71 25.00 17.86 0.00 27.78 13.89 11.11 11.76 14.58 5.41 9.09 7.14 9.52 11.84 14.29 10.53 0.00 6.25 5.71 8.20 13.95 7.41 6.00 10.53 0.00 0.00 11.63 0.00 0.00 12.20 K intron_retention Ac3,I_chr2L_21635211_21637957,I_chr2L_21643253_21646594 chr2L + chr2L_21633916_21634419 chr2L_21633915_21633916;chr2L_21634419_21634420 chr2L_21633415_21633915;chr2L_21634420_21634609 6.62 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 7.69 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 5.56 10.71 NA NA NA NA NA NA NA 20.00 7.69 NA 0.00 NA NA NA NA NA NA NA K alternative_acceptor Gel,I_chr3R_63540_64006,I_chr3R_63962_64024,I_chr3R_66533_66599 chr3R + chr3R_63540_64024;chr3R_63540_64006 chr3R_63540_63897 chr3R_63440_63539;chr3R_64025_64099 0.24 0.00 0.23 0.17 0.27 0.00 0.97 0.42 0.43 0.00 0.00 0.26 0.60 0.51 0.00 1.04 0.27 0.00 0.45 0.11 0.00 0.00 0.23 0.24 1.04 1.81 0.65 0.00 0.00 0.00 0.29 0.00 0.00 0.31 0.00 0.96 0.22 0.00 0.00 0.59 2.94 0.39 0.60 0.44 0.00 0.89 0.47 0.00 0.48 0.40 0.30 1.09 0.00 0.00 0.18 0.38 0.00 0.00 K cassette CG31313,REI_chr3R_10392729_10393060,I_chr3R_10394322_10394381,RI_chr3R_10400799_10401492 chr3R - chr3R_10392729_10393060 chr3R_10392729_10392886;chr3R_10393003_10393060 chr3R_10392887_10393002 chr3R_10392629_10392728;chr3R_10393061_10393148 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 91.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA 85.71 100.00 NA NA NA 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 K alternative_donor SP2637,Gint3 chr2R - chr2R_14530268_14545584 chr2R_14530268_14545580 chr2R_14529910_14530267;chr2R_14545585_14545707 20.00 23.53 NA 25.00 NA NA 16.00 20.00 12.50 23.08 21.43 22.73 NA 15.38 23.08 30.43 NA 26.67 17.65 15.38 20.00 21.88 20.83 35.71 NA 15.38 11.11 21.05 13.33 18.18 22.22 7.69 17.65 22.22 33.33 30.77 26.09 20.00 18.75 20.00 27.27 31.58 NA 13.04 NA 28.57 7.69 13.04 15.79 18.18 26.67 11.11 NA 30.77 20.00 15.38 10.53 17.65 K jcn_only_AD janA,RI_chr3R_25864678_25864966,I_chr3R_25864692_25864783,I_chr3R_25871509_25871807 chr3R - chr3R_25865129_25865198 chr3R_25865129_25865194 chr3R_25864967_25865128;chr3R_25865199_25865238 66.23 68.89 65.91 67.22 64.29 60.82 65.96 60.33 64.02 77.61 58.51 63.24 66.25 66.67 59.65 57.30 62.50 72.44 71.55 60.71 72.64 79.03 67.83 66.23 68.82 59.54 55.37 76.19 58.62 71.43 64.52 65.12 71.05 66.27 73.02 62.75 66.19 62.31 63.08 78.81 57.14 67.81 67.47 68.42 64.42 69.57 56.20 67.92 69.59 65.44 64.44 67.44 74.24 73.33 58.87 68.66 59.15 68.42 K intron_retention CG4199,I_chrX_1962457_1963822,I_chrX_1962457_1964222 chrX - chrX_1962457_1964499 chrX_1962456_1962457;chrX_1964499_1964500 chrX_1962357_1962456;chrX_1964500_1964568 7.32 12.50 11.76 29.41 NA 6.25 30.77 20.00 9.09 0.00 7.69 0.00 NA NA 17.65 13.64 NA NA 4.76 14.29 NA 0.00 0.00 7.69 0.00 7.69 16.13 10.87 6.67 10.53 9.09 12.50 9.52 4.76 4.00 10.53 7.32 0.00 0.00 4.35 12.50 0.00 NA 4.84 8.00 NA 5.71 12.00 8.33 6.67 3.23 0.00 0.00 0.00 10.00 0.00 4.35 5.56 K intron_retention Eaf,RI_chr2R_3294566_3294636,I_chr2R_3294566_3294656,RI_chr2R_3294566_3294714,I_chr2R_3294566_3295255,I_chr2R_3294591_3295244 chr2R - chr2R_3294566_3294636 chr2R_3294565_3294566;chr2R_3294636_3294637 chr2R_3294491_3294565;chr2R_3294637_3294736 88.89 NA NA 100.00 NA NA 90.91 93.33 78.95 NA NA 93.75 NA NA 69.23 94.44 88.89 77.78 NA 93.75 88.89 87.50 92.86 100.00 88.89 91.67 100.00 90.00 84.62 92.31 72.73 100.00 77.78 83.33 80.00 100.00 100.00 88.89 93.33 80.95 66.67 76.47 NA 91.67 NA 53.85 NA 80.00 76.47 NA 90.00 NA NA NA 100.00 NA NA 88.89 K intron_retention sqd,I_chr3R_9462248_9471474,CR33328,I_chr3R_9468150_9468236,I_chr3R_9470417_9471474 chr3R - chr3R_9462801_9468020 chr3R_9462800_9462801;chr3R_9468020_9468021 chr3R_9462777_9462800;chr3R_9468021_9468149 83.84 91.20 90.43 94.17 84.52 80.00 94.50 93.58 86.71 93.72 77.78 86.49 NA 88.99 82.40 92.18 84.69 71.84 90.57 82.31 75.23 86.00 90.98 83.59 81.54 85.71 87.68 84.09 84.55 87.19 81.10 59.35 86.08 88.37 86.34 73.39 85.45 83.44 82.12 75.46 79.28 84.71 82.47 83.09 41.36 74.49 80.23 81.89 81.63 85.29 82.42 85.15 78.48 75.00 84.38 81.61 74.47 69.52 K intron_retention crol,snoRNA:Me18S-A934,I_chr2L_11799403_11802904 chr2L - chr2L_11798042_11798664 chr2L_11798041_11798042;chr2L_11798664_11798665 chr2L_11797829_11798041;chr2L_11798665_11799010 0.66 1.05 0.00 2.21 0.00 1.26 2.43 0.81 1.03 0.00 0.00 1.54 2.72 0.00 0.88 2.03 0.66 0.00 0.00 1.13 2.50 2.91 0.30 1.24 0.00 1.04 1.57 2.55 1.62 0.40 0.00 0.00 0.76 1.53 0.00 1.00 0.95 0.39 1.19 0.00 0.00 1.40 0.00 0.88 0.62 0.00 1.26 1.05 0.63 0.58 1.17 0.00 0.00 0.00 0.52 0.00 0.00 0.00 K alternative_donor Akt1 chr3R + chr3R_11926502_11926621;chr3R_11925318_11926621;chr3R_11925014_11926621;chr3R_11925383_11926621 chr3R_11924988_11926621 chr3R_11926622_11926719;chr3R_11924974_11924987 1.57 3.51 1.72 3.70 2.38 5.26 1.09 3.96 2.27 0.00 0.00 1.96 4.55 1.89 3.57 0.00 5.66 0.00 0.00 1.57 2.86 8.89 0.00 0.00 2.13 2.44 1.35 0.00 2.22 0.00 3.33 0.00 2.70 1.96 0.00 0.00 4.82 0.00 1.39 1.03 0.00 2.70 5.00 1.67 3.57 0.00 1.89 1.82 1.75 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 K alternative_donor CG7611,I_chr3L_21516702_21517821 chr3L + chr3L_21516706_21517821;chr3L_21516330_21517821;chr3L_21516399_21517821;chr3L_21517168_21517821;chr3L_21516722_21517821;chr3L_21516501_21517821;chr3L_21516918_21517821;chr3L_21516343_21517821 chr3L_21516728_21517821 chr3L_21517822_21517920;chr3L_21516311_21516329 22.22 37.50 27.27 29.41 20.00 21.43 17.39 9.09 30.00 33.33 28.57 17.65 33.33 18.18 22.22 30.77 0.00 28.57 22.22 12.50 18.18 0.00 41.67 25.00 0.00 20.00 25.00 33.33 53.85 33.33 10.00 33.33 30.77 22.22 60.00 25.00 20.00 22.22 28.57 14.29 0.00 14.81 12.50 38.46 25.00 33.33 20.00 33.33 18.18 0.00 20.00 80.00 0.00 50.00 18.18 0.00 33.33 33.33 K cassette nkd,I_chr3L_19000023_19000530,noncoding_13420,I_chr3L_19018736_19037403 chr3L - chr3L_19001355_19037403 chr3L_19001355_19003694;chr3L_19004159_19037403 chr3L_19003695_19004158 chr3L_19001057_19001354;chr3L_19037404_19037429 100.00 NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 NA 100.00 NA NA 100.00 100.00 NA 100.00 NA NA 100.00 NA NA NA 100.00 100.00 100.00 NA NA NA NA NA NA NA NA 85.71 NA NA 100.00 NA NA NA NA NA NA NA K intron_retention CG14476,I_chrX_21474758_21476200,I_chrX_21475620_21475965 chrX - chrX_21474758_21475489 chrX_21474757_21474758;chrX_21475489_21475490 chrX_21474658_21474757;chrX_21475490_21475619 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RI_chrX_1796525_1796585,mip130,I_chrX_1820956_1821011,CG11596 chrX + chrX_1822614_1823033 chrX_1822613_1822614;chrX_1823033_1823034 chrX_1822367_1822613;chrX_1823034_1823083 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 2.56 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 3.45 0.00 3.45 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 2.94 0.00 0.00 4.55 2.13 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 K intron_retention CG3011 chrX - chrX_5810513_5810583 chrX_5810512_5810513;chrX_5810583_5810584 chrX_5810296_5810512;chrX_5810584_5810844 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 4.76 NA NA NA NA NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 3.03 0.00 10.00 NA 0.00 0.00 0.00 NA 0.00 5.26 0.00 NA NA 0.00 0.00 NA 7.14 0.00 0.00 K alternative_donor Cg25C,I_chr2L_5029811_5029873 chr2L + chr2L_5029811_5030136;chr2L_5029747_5030136 chr2L_5029637_5030136 chr2L_5030137_5030237;chr2L_5029620_5029636 30.77 15.38 36.00 51.72 52.17 54.55 16.67 35.90 37.25 15.38 14.29 19.57 28.95 30.00 41.38 25.93 47.37 50.00 46.88 33.90 31.25 43.75 4.35 9.09 0.00 36.36 21.43 30.00 21.74 16.67 62.86 60.00 31.82 48.08 30.77 14.29 4.76 6.25 7.14 35.90 25.00 60.00 38.89 31.25 53.85 30.00 16.67 47.46 51.28 10.00 5.26 0.00 61.90 0.00 60.42 7.69 0.00 51.02 K jcn_only_AA Aats-ala chr2L - chr2L_8381453_8381679 chr2L_8381549_8381679 chr2L_8381680_8381706;chr2L_8380448_8381452 0.19 0.00 0.00 2.02 0.00 0.44 0.00 0.48 0.29 0.00 0.00 0.46 1.13 0.00 0.36 0.51 0.76 0.00 0.00 0.19 0.00 3.31 0.00 1.19 0.00 0.51 0.00 0.00 0.56 0.58 0.35 0.00 0.26 0.52 0.00 5.30 0.00 0.00 0.69 0.84 0.00 0.73 0.00 0.00 0.41 0.00 1.52 0.23 0.38 1.45 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.67 K intron_retention Mdh chr3R + chr3R_22977629_22979937 chr3R_22977628_22977629;chr3R_22979937_22979938 chr3R_22977361_22977628;chr3R_22979938_22980112 0.43 0.00 0.58 1.59 0.00 0.00 0.00 1.32 0.43 0.00 0.00 0.71 1.28 0.00 0.58 0.48 0.52 1.08 0.00 0.74 1.31 1.15 1.20 0.00 2.02 1.12 0.00 0.00 0.00 1.03 0.00 0.00 2.60 0.00 2.67 2.00 0.85 0.00 1.30 0.66 0.00 0.28 0.00 0.00 0.00 1.01 2.50 0.00 0.67 0.00 1.28 0.00 0.00 1.85 0.00 0.00 1.15 0.00 K intron_retention CG7048,I_chr3R_18313003_18313231,R_chr3R_18313119_18313234,I_chr3R_18313402_18313502 chr3R + chr3R_18313115_18313231 chr3R_18313114_18313115;chr3R_18313231_18313232 chr3R_18313019_18313114;chr3R_18313232_18313331 0.00 0.65 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 3.12 0.60 0.00 2.04 1.98 1.84 1.12 3.96 0.00 1.83 0.00 0.00 0.00 0.00 0.00 1.22 0.00 1.13 0.50 0.00 0.00 0.00 0.00 1.54 0.43 0.50 1.04 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 K intron_retention CG15083 chr2R + chr2R_14724084_14724159 chr2R_14724083_14724084;chr2R_14724159_14724160 chr2R_14723921_14724083;chr2R_14724160_14724348 0.00 0.00 1.06 0.88 0.88 0.00 0.00 1.14 1.33 0.00 1.48 1.25 0.00 0.00 0.93 0.00 0.78 0.00 0.00 0.52 0.00 0.00 1.27 0.00 0.00 0.00 1.89 0.00 0.00 0.00 1.20 0.00 0.00 0.93 0.00 0.00 1.82 0.00 0.44 1.04 0.00 1.15 0.00 0.00 0.60 1.03 0.78 0.00 0.00 0.44 1.10 0.00 0.64 0.50 0.00 1.98 0.43 0.70 K intron_retention CG4266,I_chr2R_17052549_17053657 chr2R - chr2R_17054950_17055100 chr2R_17054949_17054950;chr2R_17055100_17055101 chr2R_17054677_17054949;chr2R_17055101_17055688 2.08 NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA NA NA 2.00 NA NA NA NA NA 18.75 NA NA NA 13.33 2.17 NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA K intron_retention CG17660 chr2L - chr2L_1708215_1708281 chr2L_1708214_1708215;chr2L_1708281_1708282 chr2L_1708061_1708214;chr2L_1708282_1708402 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.60 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4622 chr2R - chr2R_20421887_20421937 chr2R_20421886_20421887;chr2R_20421937_20421938 chr2R_20421767_20421886;chr2R_20421938_20422609 0.00 NA 0.00 6.67 0.00 NA 0.00 0.00 8.33 NA NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA 10.53 0.00 NA 7.69 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 7.14 NA 0.00 0.00 0.00 NA 0.00 0.00 K alternative_last_exon Qm,RI_chr3L_23084218_23087783,REI_chr3L_23086979_23087779,RE_chr3L_23086979_23087782,I_chr3L_23087712_23087783,E_chr3L_23087825_23087922,RI_chr3L_23087947_23088093 chr3L - chr3L_23087712_23087783;chr3L_23073892_23087783 chr3L_23086979_23087783 chr3L_23073684_23073891 chr3L_23086290_23086978 chr3L_23087784_23087824 99.88 99.86 99.87 98.44 99.75 99.85 99.55 99.84 99.83 99.89 100.00 99.79 99.71 99.93 99.94 99.89 99.80 99.86 99.77 99.88 99.82 99.75 99.93 99.94 99.90 99.87 99.70 99.75 99.63 99.81 99.88 99.88 100.00 99.84 99.91 99.51 99.91 99.81 99.93 99.85 99.96 99.83 99.92 99.94 99.89 99.90 99.95 99.90 99.88 99.86 99.76 99.91 99.95 99.88 99.89 99.95 99.94 99.94 K intron_retention noncoding_4330 chr2L - chr2L_22736131_22736195 chr2L_22736130_22736131;chr2L_22736195_22736196 chr2L_22735486_22736130;chr2L_22736196_22736254 32.39 22.22 25.81 57.45 33.33 36.84 44.44 39.02 32.39 21.74 40.91 35.09 26.09 37.50 37.04 28.21 33.33 34.78 34.62 33.33 38.89 36.36 46.67 21.88 54.55 41.67 48.65 41.38 38.89 10.53 31.03 17.02 23.08 26.19 26.32 42.31 23.88 33.33 18.18 24.00 40.00 37.50 27.78 33.33 19.15 28.26 18.18 22.22 28.57 21.28 33.33 27.78 34.38 20.00 30.77 27.50 25.00 26.23 K jcn_only_AD Rip11,E_chrX_18532733_18533695,RI_chrX_18530353_18530870,RI_chrX_18530742_18530870,RI_chrX_18544139_18544185 chrX - chrX_18530907_18531445 chrX_18530907_18531363 chrX_18530871_18530906;chrX_18531446_18531606 4.17 4.26 1.31 4.22 6.15 4.81 2.71 5.83 2.19 1.96 8.76 3.31 4.58 3.28 4.57 4.62 4.60 3.20 3.43 3.37 8.24 3.64 7.71 4.10 3.94 5.41 6.75 7.54 2.03 3.49 4.34 2.05 3.67 1.93 2.82 6.44 5.06 4.17 6.85 2.42 4.61 3.07 1.23 2.57 2.71 2.75 4.73 4.19 5.91 4.15 4.06 5.74 4.95 5.63 4.01 3.93 5.05 4.78 K jcn_only_AD Cctgamma chr3R + chr3R_12473409_12473557;chr3R_12473318_12473557;chr3R_12473479_12473557;chr3R_12473420_12473557;chr3R_12473464_12473557 chr3R_12473424_12473557 chr3R_12473558_12473651;chr3R_12473311_12473317 0.79 1.53 0.95 1.20 0.99 0.00 1.23 3.96 0.35 0.00 1.00 1.27 0.00 0.92 0.00 1.32 0.00 1.14 1.03 2.05 0.00 0.48 0.00 0.78 0.00 0.00 0.76 0.00 5.00 1.11 0.87 0.00 3.17 1.34 1.45 0.00 0.70 0.00 0.94 0.79 0.00 1.29 1.14 0.00 0.00 0.00 1.16 0.00 0.00 0.88 0.00 1.15 1.47 0.00 0.00 0.93 0.00 3.39 K intron_retention CG30000,I_chr2R_5495525_5495581 chr2R + chr2R_5493888_5493951 chr2R_5493887_5493888;chr2R_5493951_5493952 chr2R_5493785_5493887;chr2R_5493952_5494268 4.84 2.78 1.15 5.10 5.00 6.45 4.04 0.95 4.13 5.97 6.90 6.06 6.90 4.84 3.61 5.63 3.39 3.39 3.33 6.29 0.00 8.33 5.00 3.55 2.47 4.30 6.02 10.42 6.42 9.64 2.02 8.86 3.38 5.71 3.61 3.30 5.88 0.93 4.39 6.47 7.92 4.61 1.61 2.20 5.88 4.55 8.06 6.45 4.17 11.25 6.03 4.40 8.00 5.19 0.00 4.17 2.78 7.23 K jcn_only_AA tomosyn,I_chrX_12527065_12527950,I_chrX_12531219_12531470,I_chrX_12534873_12541731,I_chrX_12548772_12549203 chrX + chrX_12525847_12527945;chrX_12525847_12527950 chrX_12525847_12529764 chrX_12525686_12525846 69.57 NA 65.00 64.71 NA NA 79.07 75.56 76.71 NA 75.00 60.98 80.00 79.31 NA 76.00 NA 62.96 75.76 58.70 77.78 NA 72.22 NA 80.95 66.67 71.43 NA NA NA 69.57 NA 55.00 68.18 58.33 69.57 NA NA NA 62.50 NA 60.47 75.00 NA NA NA 52.00 NA 69.44 NA NA NA NA NA 70.97 NA NA NA K intron_retention lqf,I_chr3L_7522287_7522807 chr3L + chr3L_7522287_7526454 chr3L_7522286_7522287;chr3L_7526454_7526455 chr3L_7522187_7522286;chr3L_7526455_7526543 0.00 2.60 0.00 1.97 0.00 0.00 0.00 1.92 0.97 0.00 2.22 1.06 3.45 1.41 1.12 1.26 0.00 0.00 0.00 0.00 0.00 1.25 1.33 0.00 1.54 0.00 0.00 0.00 1.87 3.23 0.00 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 2.44 1.19 0.65 0.00 1.47 0.00 0.00 0.00 0.00 0.00 3.57 0.00 K multi_cassette Jupiter,I_chr3R_7417030_7419354,I_chr3R_7418347_7445425,RE_chr3R_7419487_7429863,I_chr3R_7429934_7430307,I_chr3R_7429962_7445425,I_chr3R_7430006_7445425,RI_chr3R_7442748_7445425,RI_chr3R_7442793_7445425 chr3R - chr3R_7418347_7445425 chr3R_7418347_7419354;chr3R_7419489_7429863;chr3R_7430006_7445425 chr3R_7419355_7419488;chr3R_7429864_7430005 chr3R_7418247_7418346;chr3R_7445426_7445525 45.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Mlf,noncoding_7111,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CE_chr2R_11826384_11826741,I_chr2R_11826763_11826990,CEI_chr2R_11826763_11827279 chr2R - chr2R_11824089_11825619 chr2R_11824088_11824089;chr2R_11825619_11825620 chr2R_11823989_11824088;chr2R_11825620_11825772 88.67 90.00 NA 65.62 NA NA NA 91.67 100.00 33.33 NA 88.46 70.00 100.00 87.50 92.86 NA NA 100.00 85.00 70.00 93.75 93.33 80.00 88.89 NA 77.78 85.71 91.67 88.89 NA 100.00 100.00 100.00 80.00 NA 66.67 80.00 81.25 94.44 87.50 80.00 NA 100.00 90.00 92.86 84.62 100.00 93.75 85.71 93.33 88.89 NA 66.67 NA 75.00 75.00 84.62 K intron_retention Galpha49B,I_chr2R_8501587_8501648,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8500357_8501071 chr2R_8500356_8500357;chr2R_8501071_8501072 chr2R_8500333_8500356;chr2R_8501072_8501850 46.15 NA 61.54 66.67 43.75 NA 42.86 35.71 46.67 NA 56.25 27.50 30.43 33.33 69.23 34.62 40.00 81.82 46.67 48.15 56.25 NA 36.84 46.15 NA 46.15 NA NA NA NA 52.63 NA NA 46.43 NA 36.36 50.00 NA NA NA NA 61.11 50.00 35.71 NA NA NA NA 37.50 NA 45.45 27.78 NA NA 47.06 NA NA NA K intron_retention CG3760,CG3770,CG12851 chr2R + chr2R_20826741_20826793 chr2R_20826740_20826741;chr2R_20826793_20826794 chr2R_20826672_20826740;chr2R_20826794_20826860 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.61 6.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG3529 chr3L + chr3L_9442925_9443331 chr3L_9442925_9443117;chr3L_9443169_9443331 chr3L_9443118_9443168 chr3L_9442789_9442924;chr3L_9443332_9443886 100.00 95.00 100.00 100.00 100.00 100.00 77.78 100.00 97.06 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 95.24 97.14 100.00 94.12 100.00 95.00 95.24 83.33 90.00 100.00 100.00 96.15 100.00 100.00 95.00 95.65 100.00 96.77 96.15 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 96.15 95.65 100.00 100.00 94.44 100.00 100.00 95.24 100.00 K intron_retention CG8726 chr2R - chr2R_3857275_3857373 chr2R_3857274_3857275;chr2R_3857373_3857374 chr2R_3857095_3857274;chr2R_3857374_3857681 1.85 0.00 3.57 4.88 7.84 0.00 13.21 0.00 5.63 0.00 0.00 1.10 3.92 4.17 1.85 5.80 0.00 0.00 1.67 3.23 0.00 2.53 0.00 0.00 8.70 1.75 1.79 0.00 10.81 3.28 5.19 2.38 1.83 6.67 0.00 2.38 0.00 1.92 0.00 2.70 0.00 4.26 2.00 0.00 7.27 3.03 0.00 2.70 4.49 5.71 0.00 0.00 0.00 0.00 5.00 8.11 0.00 0.00 K intron_retention stj chr2R + chr2R_9697869_9697983 chr2R_9697868_9697869;chr2R_9697983_9697984 chr2R_9697419_9697868;chr2R_9697984_9698124 0.00 0.00 0.00 6.12 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 5.61 2.15 0.00 0.00 1.09 3.76 5.56 3.85 1.04 0.00 0.00 2.50 1.35 0.00 1.27 1.40 0.00 0.00 0.00 0.00 1.00 0.00 0.97 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Jafrac1,I_chrX_13223890_13225154,I_chrX_13224064_13225154,RI_chrX_13224713_13225154 chrX + chrX_13224064_13225154 chrX_13224063_13224064;chrX_13225154_13225155 chrX_13223964_13224063;chrX_13225155_13225254 66.67 NA NA 75.00 NA NA 64.29 68.75 57.89 NA 92.31 88.89 NA NA 30.77 83.33 NA 35.71 NA 70.00 58.33 86.21 NA 57.89 NA 60.00 59.26 82.76 66.67 NA 63.64 NA 88.89 53.33 NA 78.57 NA NA NA 88.89 86.67 58.82 NA NA NA 62.50 NA 77.78 50.00 NA 83.33 NA NA NA 66.67 NA NA NA N cassette zfh1 chr3R + chr3R_26592103_26599708 chr3R_26592103_26599294;chr3R_26599459_26599708 chr3R_26599295_26599458 chr3R_26591536_26592102;chr3R_26599709_26600419 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG14425,Sxl,CG14425_Sxl,CEFI_chrX_6981717_6984166,CEF_chrX_6984538_6992033 chrX - chrX_6982783_6985706 chrX_6982801_6985706 chrX_6985707_6985745;chrX_6982611_6982782 60.00 63.64 53.33 68.42 NA NA 61.54 63.64 60.61 NA 60.00 61.54 46.15 58.33 55.56 58.82 70.00 36.36 90.00 53.33 NA NA 46.15 57.14 60.00 NA 52.94 66.67 NA NA 51.22 NA NA 58.62 50.00 NA NA NA NA 52.00 NA 47.83 72.73 62.50 NA NA 55.56 60.87 64.00 NA 63.64 66.67 NA NA 71.43 30.77 75.00 NA K intron_retention Snm1 chr3R + chr3R_1381924_1381980 chr3R_1381923_1381924;chr3R_1381980_1381981 chr3R_1380679_1381923;chr3R_1381981_1382434 0.00 NA NA NA NA NA 7.14 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 13.33 NA NA NA NA NA 0.00 NA 10.53 NA NA NA NA NA NA 13.64 NA NA NA NA NA NA NA NA NA K intron_retention CG16971,I_chr3L_225856_225909,I_chr3L_225919_225983,RI_chr3L_225919_226004,I_chr3L_229245_230186 chr3L + chr3L_225856_226769 chr3L_225855_225856;chr3L_226769_226770 chr3L_225819_225855;chr3L_226770_227322 98.21 97.00 98.40 100.00 97.50 99.31 99.65 99.12 98.15 97.17 99.30 98.91 99.57 99.10 99.54 98.21 97.47 98.16 98.99 97.55 98.01 91.72 98.28 97.25 97.37 97.37 96.17 95.50 99.28 96.37 98.54 95.70 98.40 98.80 98.45 96.83 98.66 97.73 96.24 98.21 95.56 98.63 98.80 98.74 100.00 98.46 95.80 98.62 98.77 94.49 96.50 95.09 98.82 96.92 97.59 97.41 98.89 99.25 K intron_retention veg,I_chr2R_12845291_12845765 chr2R + chr2R_12843183_12843248 chr2R_12843182_12843183;chr2R_12843248_12843249 chr2R_12843138_12843182;chr2R_12843249_12844801 90.91 88.89 NA 91.67 NA NA 77.78 90.00 100.00 NA NA 90.00 NA NA 88.89 77.78 NA NA NA 73.33 NA 77.78 85.71 73.33 90.91 NA 92.86 100.00 100.00 NA NA NA 91.67 100.00 NA 100.00 91.67 NA NA 90.48 NA 92.31 NA 91.67 90.00 93.33 100.00 90.00 100.00 NA 91.67 NA 100.00 NA NA 88.89 88.89 90.91 K intron_retention RpL3,E_chr3R_7047964_7050565,I_chr3R_7048452_7049579,snoRNA:Psi28S-291,E_chr3R_7049697_7049750,I_chr3R_7049970_7050189,snoRNA:Me28S-G2017 chr3R + chr3R_7049253_7049579 chr3R_7049252_7049253;chr3R_7049579_7049580 chr3R_7049117_7049252;chr3R_7049580_7049679 0.20 0.13 0.26 0.34 0.20 0.25 0.31 0.15 0.31 0.05 0.34 0.16 0.21 0.19 0.17 0.23 0.25 0.23 0.30 0.16 0.31 0.14 0.25 0.22 0.21 0.10 0.26 0.92 0.11 0.20 0.14 0.21 0.10 0.17 0.18 0.13 0.14 0.20 0.20 0.23 0.32 0.25 0.32 0.21 0.13 0.19 0.08 0.26 0.32 0.27 0.22 0.09 0.15 0.04 0.16 0.13 0.14 0.32 K alternative_donor CG8963,I_chr2R_12906431_12906583,I_chr2R_12906930_12906989 chr2R - chr2R_12906431_12906937 chr2R_12906431_12906711 chr2R_12906331_12906430;chr2R_12906938_12907019 100.00 100.00 96.77 100.00 95.65 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 95.00 100.00 96.67 100.00 100.00 92.86 100.00 100.00 100.00 97.37 100.00 97.30 100.00 100.00 100.00 100.00 100.00 97.83 100.00 96.30 96.55 100.00 100.00 100.00 100.00 98.31 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 97.37 100.00 95.00 100.00 97.37 100.00 95.45 100.00 K intron_retention lig,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3963296_3963364 chr2R_3963295_3963296;chr2R_3963364_3963365 chr2R_3963170_3963295;chr2R_3963365_3963607 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 8.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention spi,I_chr2L_19569183_19577185,I_chr2L_19569227_19572142,I_chr2L_19569227_19577173,mir-2a-2,mir-2a-1,mir-2b-2 chr2L - chr2L_19569227_19571571 chr2L_19569226_19569227;chr2L_19571571_19571572 chr2L_19569127_19569226;chr2L_19571572_19571767 6.19 7.14 3.76 4.35 5.13 7.14 4.48 6.06 6.22 9.68 6.74 7.61 3.73 10.71 6.42 7.80 5.19 4.60 7.10 6.76 2.33 4.51 11.31 7.69 5.80 3.91 4.17 4.00 3.90 4.92 7.06 4.67 2.05 4.29 4.72 6.14 6.25 8.43 6.82 11.02 1.57 7.26 4.20 6.45 3.76 6.19 7.97 6.47 7.52 10.78 7.38 4.59 14.29 12.64 5.26 7.56 4.62 6.03 K jcn_only_AA U26,fu12 chr2L - chr2L_8448354_8448424 chr2L_8448365_8448424 chr2L_8448425_8448706;chr2L_8447920_8448353 21.43 NA NA 20.00 NA NA 11.54 9.38 30.43 NA NA 13.33 NA NA 25.00 21.43 NA 10.00 NA 24.32 NA 25.00 25.00 29.17 NA NA 9.09 NA NA NA 35.56 NA NA 33.33 23.81 NA 8.82 NA 15.38 12.82 NA 21.05 NA 30.00 NA NA NA 23.33 13.79 NA 15.38 NA NA NA 23.08 NA NA NA K intron_retention bwa,I_chr2L_20069515_20073377,I_chr2L_20073310_20073377 chr2L + chr2L_20072647_20073377 chr2L_20072646_20072647;chr2L_20073377_20073378 chr2L_20072354_20072646;chr2L_20073378_20073477 16.25 11.94 30.56 17.24 13.64 28.26 16.25 23.53 18.52 10.26 15.00 20.83 19.51 23.91 17.54 23.53 11.76 11.36 20.59 20.18 8.33 27.06 24.18 11.32 14.58 17.50 17.14 21.57 16.67 12.73 26.67 11.76 16.67 18.42 27.50 30.19 17.46 10.64 14.00 8.22 9.62 20.83 18.42 12.31 11.11 11.84 10.84 13.89 22.22 13.13 12.50 13.04 12.24 8.57 19.30 7.81 14.29 15.79 K cassette Sema-1a,R_chr2L_8564297_8610230,E_chr2L_8622170_8631026 chr2L + chr2L_8663252_8665445;chr2L_8663252_8666035 chr2L_8663252_8664157;chr2L_8664221_8665445,chr2L_8664221_8666035 chr2L_8664158_8664220 chr2L_8663198_8663251;chr2L_8666036_8666047 88.89 NA NA NA NA NA NA NA NA 92.31 NA NA NA NA NA NA NA NA NA 100.00 NA 72.73 100.00 NA 88.89 NA NA 83.33 77.78 87.50 NA NA 100.00 NA NA 90.91 92.86 75.00 90.00 100.00 NA 75.00 NA 77.78 NA NA NA 100.00 NA NA 75.00 85.71 NA NA NA NA NA NA K jcn_only_AA l(2)tid chr2R + chr2R_19595998_19596157 chr2R_19595998_19596152 chr2R_19594625_19595997;chr2R_19596158_19596758 81.25 71.43 90.48 NA NA 87.50 NA 86.67 94.44 80.95 NA 78.38 NA NA NA 85.00 NA 88.00 84.00 86.49 NA 84.00 84.44 72.73 57.14 NA 62.96 70.83 91.18 85.71 NA 87.18 82.14 78.26 58.33 NA 89.83 87.50 75.61 72.00 79.41 76.60 NA 79.41 81.16 75.00 77.78 80.95 88.24 80.95 81.25 85.71 84.00 78.12 NA 81.25 85.07 88.24 N jcn_only_AA PNGase,I_chr2R_1906759_1906817,I_chr2R_1906899_1906977 chr2R + chr2R_1907055_1907113 chr2R_1907055_1907110 chr2R_1906978_1907054;chr2R_1907114_1907168 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.63 96.40 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG7519 chr3L + chr3L_21486456_21486519 chr3L_21486455_21486456;chr3L_21486519_21486520 chr3L_21486348_21486455;chr3L_21486520_21487016 0.00 0.00 0.00 1.41 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.26 0.00 0.00 2.08 0.00 1.82 0.00 0.00 0.00 8.47 11.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 3.23 1.02 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention l(2)k05819,I_chr2L_4396173_4396266 chr2L + chr2L_4396173_4396809 chr2L_4396172_4396173;chr2L_4396809_4396810 chr2L_4396143_4396172;chr2L_4396810_4396906 8.00 11.63 6.52 4.40 5.56 9.52 7.29 7.58 7.44 13.04 0.00 24.24 39.39 7.55 7.84 6.25 4.65 6.00 6.45 8.47 0.00 29.73 5.77 11.32 10.81 2.67 7.02 0.00 10.26 24.14 11.63 3.57 14.29 7.32 8.00 31.03 5.68 13.79 10.34 9.09 14.29 8.33 8.33 6.12 15.00 12.50 6.90 20.00 6.98 10.71 9.52 0.00 NA NA 3.17 7.14 15.38 46.15 K intron_retention Tango1,I_chr2L_6652699_6652752 chr2L + chr2L_6653378_6653434 chr2L_6653377_6653378;chr2L_6653434_6653435 chr2L_6653217_6653377;chr2L_6653435_6653536 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11033,I_chr3R_4879198_4879257,I_chr3R_4882567_4883651 chr3R + chr3R_4879131_4879257 chr3R_4879130_4879131;chr3R_4879257_4879258 chr3R_4879098_4879130;chr3R_4879258_4879357 73.33 NA NA 92.31 NA NA NA 81.82 62.50 NA NA 81.82 NA NA NA NA NA 63.64 NA 60.00 NA 83.33 66.67 NA NA NA NA 71.43 95.24 73.33 87.50 66.67 64.52 91.67 58.33 92.31 NA NA 70.00 76.47 NA 61.54 NA 100.00 NA 77.78 NA 76.67 71.43 63.64 NA NA NA NA 88.89 NA NA 66.67 K jcn_only_AA robl chr2R + chr2R_13344079_13344147 chr2R_13344079_13344141 chr2R_13344010_13344078;chr2R_13344148_13344210 100.00 99.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.45 99.81 100.00 100.00 100.00 99.64 100.00 100.00 100.00 99.66 100.00 100.00 99.74 99.31 99.39 99.62 99.29 99.57 99.59 100.00 100.00 99.52 100.00 100.00 100.00 100.00 99.80 99.68 100.00 100.00 98.21 99.81 100.00 100.00 100.00 100.00 99.06 100.00 99.74 100.00 100.00 100.00 100.00 100.00 99.67 100.00 100.00 99.65 K jcn_only_AD MED21 chr3LHet - chr3LHet_601181_601357 chr3LHet_601181_601284 chr3LHet_601118_601180;chr3LHet_601358_601426 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 95.24 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD sina chr3L + chr3L_16847053_16849396 chr3L_16847626_16849396 chr3L_16849397_16852050;chr3L_16846848_16847052 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.51 100.00 100.00 100.00 98.11 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 98.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 98.31 100.00 100.00 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 K alternative_last_exon mnb chrX - chrX_17758579_17763014 chrX_17762200_17763014,chrX_17762203_17763014,chrX_17762403_17763014 chrX_17754755_17758578 chrX_17762134_17762199 chrX_17763015_17763849 6.19 6.67 5.00 3.92 0.00 2.94 6.52 2.17 7.06 20.37 9.38 6.58 14.81 6.67 2.50 12.20 3.57 2.94 3.33 7.53 3.12 10.00 5.43 7.69 7.27 3.45 11.59 6.12 10.34 7.81 7.89 5.26 13.33 3.92 13.21 4.84 6.92 6.25 6.19 10.23 5.08 9.64 0.00 15.15 2.41 5.75 10.39 5.41 8.00 3.57 9.88 5.00 6.67 5.80 2.50 5.33 2.54 4.04 N multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2813977;chr2R_2814097_2814174;chr2R_2814327_2814894;chr2R_2815654_2816013;chr2R_2816342_2816577;chr2R_2816779_2817753 chr2R_2813978_2814096;chr2R_2814175_2814326;chr2R_2814895_2815653;chr2R_2816014_2816341;chr2R_2816578_2816778 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Syx4,I_chrX_2635555_2635621,I_chrX_2636831_2636971 chrX - chrX_2636025_2636593 chrX_2636024_2636025;chrX_2636593_2636594 chrX_2635931_2636024;chrX_2636594_2636830 0.00 0.00 1.22 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 3.57 1.39 0.00 0.00 0.00 0.69 0.00 0.00 0.00 1.06 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 3.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 2.38 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8334,I_chr3L_19870731_19870822 chr3L + chr3L_19867096_19867162 chr3L_19867095_19867096;chr3L_19867162_19867163 chr3L_19866992_19867095;chr3L_19867163_19867439 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K intron_retention RpII15 chr3R + chr3R_10134845_10134906 chr3R_10134844_10134845;chr3R_10134906_10134907 chr3R_10134776_10134844;chr3R_10134907_10135970 44.95 NA 36.36 47.83 30.77 NA 54.55 52.63 46.15 NA NA 53.85 NA NA 47.06 50.00 42.86 NA 30.77 60.00 42.86 NA NA NA NA 58.33 87.50 77.78 87.50 NA 30.77 NA NA 33.33 NA NA 41.18 NA NA 46.15 NA 35.00 58.33 NA 38.46 NA NA NA 40.00 NA NA NA NA NA 43.75 NA 35.29 33.33 K jcn_only_AD CycA,RE_chr3L_11825347_11826111 chr3L - chr3L_11825347_11826586 chr3L_11825347_11825973 chr3L_11825247_11825346;chr3L_11826587_11826636 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.79 100.00 100.00 100.00 100.00 100.00 100.00 99.11 100.00 100.00 99.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.10 100.00 100.00 98.82 100.00 99.14 98.73 100.00 99.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.03 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG7611,I_chr3L_21516702_21517821 chr3L + chr3L_21516706_21517821;chr3L_21516330_21517821;chr3L_21516399_21517821;chr3L_21517168_21517821;chr3L_21516722_21517821;chr3L_21516501_21517821;chr3L_21516343_21517821;chr3L_21516728_21517821 chr3L_21516918_21517821 chr3L_21517822_21517920;chr3L_21516311_21516329 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 3.85 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K intron_retention CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4988849_4990307 chr2L_4988848_4988849;chr2L_4990307_4990308 chr2L_4988734_4988848;chr2L_4990308_4990450 50.00 NA NA NA NA NA 71.43 77.78 53.33 9.09 NA 46.15 63.64 NA NA 70.00 NA NA NA NA NA 50.00 45.45 30.77 NA NA 53.33 45.45 16.67 NA NA NA NA 70.00 NA NA NA NA 38.46 42.11 NA 64.29 NA 41.67 NA NA NA NA NA NA NA NA NA NA 77.78 NA NA NA K jcn_only_AA RFI_chr2L_3030576_3030666,GABPI chr2L + chr2L_3031894_3032009 chr2L_3031894_3031953 chr2L_3031000_3031893;chr2L_3032010_3032255 100.00 99.41 99.34 99.52 100.00 100.00 100.00 99.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.86 100.00 99.35 100.00 99.72 99.29 100.00 100.00 100.00 100.00 99.25 99.29 100.00 100.00 100.00 99.43 98.84 100.00 100.00 100.00 100.00 98.96 100.00 99.48 100.00 99.40 100.00 100.00 100.00 100.00 99.61 99.37 98.87 99.60 99.45 99.47 99.04 99.20 100.00 99.39 100.00 100.00 100.00 K intron_retention RFeSP chr2L - chr2L_1613424_1613982 chr2L_1613423_1613424;chr2L_1613982_1613983 chr2L_1613044_1613423;chr2L_1613983_1614196 1.05 1.05 0.97 2.05 0.00 1.15 1.05 1.56 1.21 1.72 2.46 0.82 1.72 1.27 0.68 3.47 0.00 1.11 2.61 0.99 1.98 8.67 1.31 1.06 0.56 1.30 1.51 1.45 2.79 0.53 1.62 0.28 1.02 0.96 1.17 0.79 0.95 0.93 0.83 0.86 0.66 0.90 0.86 1.09 0.51 1.33 1.08 2.03 0.64 1.57 0.95 1.20 0.55 0.87 0.61 0.90 0.72 0.97 K jcn_only_AA Csk,I_chr3R_7463337_7463512,I_chr3R_7468928_7472509 chr3R - chr3R_7461302_7461422 chr3R_7461353_7461422 chr3R_7461423_7461691;chr3R_7461191_7461301 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.84 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.69 100.00 99.84 100.00 100.00 100.00 100.00 100.00 100.00 99.60 99.72 99.83 100.00 100.00 99.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.74 100.00 100.00 100.00 K intron_retention AGO2 chr3L + chr3L_15552362_15552838 chr3L_15552361_15552362;chr3L_15552838_15552839 chr3L_15552200_15552361;chr3L_15552839_15553216 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.80 100.00 100.00 100.00 99.79 99.49 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.51 99.69 99.62 100.00 100.00 100.00 99.61 100.00 99.34 100.00 99.74 100.00 100.00 100.00 100.00 100.00 100.00 99.46 99.58 100.00 99.32 99.80 100.00 100.00 100.00 99.56 100.00 100.00 100.00 100.00 99.66 100.00 100.00 99.32 100.00 100.00 100.00 100.00 K alternative_donor Asx chr2R + chr2R_10397969_10398509 chr2R_10398000_10398509 chr2R_10398510_10399220;chr2R_10397728_10397968 3.33 2.99 2.38 8.33 6.82 7.32 2.38 3.77 2.27 7.69 14.29 3.30 9.68 9.09 0.00 0.00 4.88 3.33 6.90 4.10 9.68 0.00 4.59 1.09 2.60 4.76 4.82 4.69 10.20 5.26 9.09 0.00 5.56 3.45 3.77 3.28 2.67 2.70 2.19 2.25 0.00 2.35 9.09 0.00 1.61 4.44 1.54 0.00 3.61 6.78 4.94 2.70 4.88 1.72 2.94 3.03 2.00 2.17 K jcn_only_AA kst,I_chr3L_3365752_3365816,I_chr3L_3367008_3367514 chr3L + chr3L_3365752_3365816 chr3L_3365752_3365810 chr3L_3365652_3365751;chr3L_3365817_3365916 99.78 99.51 99.83 99.62 99.82 100.00 100.00 99.89 99.79 99.76 100.00 99.84 99.62 99.86 99.85 99.85 99.60 99.84 99.62 99.85 99.83 99.78 99.75 99.71 99.49 99.60 99.54 99.52 99.78 99.72 99.81 99.52 99.53 99.76 100.00 99.78 99.81 100.00 99.77 99.87 99.83 99.63 99.58 100.00 99.84 99.91 99.72 99.65 99.92 99.58 100.00 99.47 99.75 99.72 99.63 100.00 99.77 99.61 K intron_retention KrT95D,I_chr3R_19825840_19825904 chr3R - chr3R_19825285_19825355 chr3R_19825284_19825285;chr3R_19825355_19825356 chr3R_19824729_19825284;chr3R_19825356_19825839 0.00 0.00 0.96 3.50 1.80 0.00 0.61 0.00 0.70 0.00 0.00 1.18 0.00 2.27 0.00 1.87 0.00 0.00 0.00 0.88 1.65 1.23 3.17 1.76 1.71 0.00 5.03 4.48 1.22 0.00 0.00 0.00 2.00 0.00 1.94 1.55 0.77 0.00 0.00 0.87 0.00 0.87 0.00 0.00 0.00 0.00 1.32 0.00 2.31 1.43 0.00 0.00 0.00 1.98 0.00 0.71 0.00 0.00 K intron_retention CG33129,I_chr2L_10966410_10967142,I_chr2L_10966622_10967108 chr2L - chr2L_10969929_10970001 chr2L_10969928_10969929;chr2L_10970001_10970002 chr2L_10969633_10969928;chr2L_10970002_10970284 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor eas,REI_chrX_16172581_16175010,REI_chrX_16172581_16177702,RI_chrX_16173003_16173054 chrX + chrX_16173003_16174918 chrX_16173003_16173054 chrX_16172903_16173002;chrX_16174919_16175008 83.33 100.00 100.00 100.00 100.00 100.00 100.00 55.56 100.00 50.00 75.00 100.00 66.67 100.00 66.67 83.33 80.00 60.00 75.00 90.91 80.00 66.67 83.33 100.00 66.67 66.67 100.00 75.00 100.00 100.00 42.86 75.00 100.00 83.33 75.00 83.33 75.00 100.00 100.00 87.50 75.00 87.50 100.00 100.00 66.67 80.00 100.00 100.00 87.50 100.00 80.00 66.67 100.00 50.00 100.00 100.00 66.67 75.00 K intron_retention CG11125 chr2R + chr2R_3335761_3335816 chr2R_3335760_3335761;chr2R_3335816_3335817 chr2R_3335292_3335760;chr2R_3335817_3336124 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.39 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA K intron_retention msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2579521_2585604 chr3L_2579520_2579521;chr3L_2585604_2585605 chr3L_2579455_2579520;chr3L_2585605_2585715 0.00 0.00 0.00 0.25 0.00 0.00 0.24 0.23 0.41 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 2.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11790,CG11791 chr3R + chr3R_20876340_20876902 chr3R_20876339_20876340;chr3R_20876902_20876903 chr3R_20875859_20876339;chr3R_20876903_20877278 53.93 51.92 44.00 45.56 75.00 54.84 56.52 40.66 54.55 33.33 50.00 43.30 44.90 42.00 53.19 58.73 56.52 57.78 51.56 49.48 44.90 57.53 54.79 50.75 71.88 75.00 53.33 54.76 68.00 56.36 49.18 65.79 52.63 51.61 58.00 78.79 57.14 50.00 64.00 66.36 69.64 53.93 57.58 63.41 51.56 54.17 47.06 62.07 46.32 42.05 53.33 56.10 38.46 44.68 59.26 47.69 39.47 57.63 K alternative_last_exon CG42336,I_chr2R_7182291_7183676 chr2R - chr2R_7182291_7184766 chr2R_7183391_7184766 chr2R_7181755_7182290 chr2R_7182999_7183390 chr2R_7184767_7184973 1.83 1.69 1.75 0.00 0.00 0.00 1.54 1.06 1.83 2.78 0.00 4.17 2.44 0.00 3.17 1.19 0.00 1.89 1.54 0.83 2.27 5.26 1.72 4.00 3.23 1.85 3.03 5.13 2.70 0.00 2.90 3.57 4.76 2.30 3.57 2.38 1.69 2.56 1.61 2.74 2.13 0.96 2.17 3.51 3.64 1.06 1.47 3.92 1.05 1.59 0.00 0.00 1.85 1.59 1.30 1.45 1.02 2.30 K cassette cv,RI_chrX_5584191_5585924,I_chrX_5584351_5585924,I_chrX_5584353_5585924,I_chrX_5584357_5585924,I_chrX_5584683_5585924 chrX + chrX_5584191_5585924 chrX_5584191_5584350;chrX_5585022_5585924 chrX_5584351_5585021 chrX_5584091_5584190;chrX_5585925_5586024 98.15 98.57 96.61 96.77 97.50 94.64 97.06 100.00 98.31 96.77 100.00 98.98 95.65 100.00 98.33 98.53 97.73 100.00 94.92 98.57 98.11 97.67 98.81 95.18 97.78 98.44 95.45 100.00 98.15 98.00 92.73 91.30 93.33 97.67 97.87 98.18 99.03 98.59 99.01 100.00 91.49 94.92 100.00 98.51 98.55 98.46 94.55 96.23 96.26 100.00 98.63 97.83 97.10 98.31 98.53 93.94 98.73 98.67 K intron_retention CG2698,I_chr3R_3828169_3828941,I_chr3R_3828880_3828941,I_chr3R_3829483_3829715,I_chr3R_3830586_3830981 chr3R + chr3R_3829483_3829709 chr3R_3829482_3829483;chr3R_3829709_3829710 chr3R_3829383_3829482;chr3R_3829710_3829900 80.00 80.00 85.71 84.38 66.67 68.75 80.65 87.10 81.58 88.89 73.33 80.00 94.74 80.00 80.77 90.00 75.00 100.00 95.65 80.95 93.33 100.00 78.12 83.33 78.26 65.38 70.59 86.67 78.57 80.00 85.29 77.78 82.61 85.29 78.95 84.00 64.71 71.43 72.41 82.05 84.00 77.50 80.95 85.71 65.38 75.86 87.50 78.79 79.07 76.67 83.33 82.61 76.92 65.00 70.83 75.86 76.19 70.37 K jcn_only_AD Vap-33-1 chrX + chrX_3843206_3843513;chrX_3843210_3843513;chrX_3843099_3843513;chrX_3843406_3843513 chrX_3843214_3843513 chrX_3843514_3843746;chrX_3843030_3843098 0.00 1.00 0.00 0.54 1.10 0.00 0.44 1.34 1.82 0.00 0.00 0.98 0.86 0.84 0.00 0.00 0.00 1.22 0.00 1.01 0.97 2.70 4.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.85 0.00 0.00 0.84 2.44 1.22 0.00 0.00 0.00 0.00 0.00 0.51 0.00 2.86 0.00 0.00 0.00 0.00 1.11 1.49 5.48 1.92 0.00 0.00 0.00 1.19 2.65 2.38 K intron_retention CG7580,I_chr3L_17468694_17468750,I_chr3L_17468699_17468750 chr3L + chr3L_17468695_17468750 chr3L_17468694_17468695;chr3L_17468750_17468751 chr3L_17468599_17468694;chr3L_17468751_17468850 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.28 0.00 0.00 0.22 0.00 0.21 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.08 0.00 0.23 0.29 0.55 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention M(2)21AB,I_chr2L_112022_112689,RI_chr2L_132256_132482 chr2L + chr2L_113370_113433 chr2L_113369_113370;chr2L_113433_113434 chr2L_112690_113369;chr2L_113434_114407 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3L_1494947_1496080,pUf68,cue chr3L - chr3L_1503929_1503986 chr3L_1503928_1503929;chr3L_1503986_1503987 chr3L_1503226_1503928;chr3L_1503987_1504320 0.00 0.00 2.33 7.46 0.00 0.00 3.85 0.89 1.94 0.00 0.00 4.35 0.00 0.00 1.87 0.88 3.45 0.00 0.00 0.00 0.00 9.52 2.90 1.06 0.00 0.00 3.28 2.86 0.00 2.00 0.00 0.00 1.52 2.72 0.00 1.92 0.00 3.77 0.00 0.00 0.00 1.38 0.00 1.28 0.00 0.00 0.00 0.00 1.20 0.00 6.06 0.00 0.00 0.00 2.17 0.00 0.00 0.00 K jcn_only_AA Rph,I_chrX_10644396_10644958,I_chrX_10647710_10648325,RI_chrX_10649048_10651427 chrX - chrX_10644396_10644958 chrX_10644404_10644958 chrX_10644959_10645058;chrX_10644296_10644395 100.00 98.28 97.50 97.92 100.00 93.62 100.00 100.00 100.00 100.00 100.00 98.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.39 100.00 95.24 98.55 100.00 97.56 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 98.46 100.00 100.00 97.50 100.00 100.00 97.87 97.37 NA 100.00 100.00 97.96 100.00 100.00 100.00 K intron_retention dpa,CG12736 chr2R - chr2R_3385351_3385411 chr2R_3385350_3385351;chr2R_3385411_3385412 chr2R_3384984_3385350;chr2R_3385412_3385779 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor C1GalTA,I_chr2L_8945896_8950977 chr2L - chr2L_8945535_8950977 chr2L_8945535_8950769 chr2L_8945358_8945534;chr2L_8950978_8951077 7.50 10.00 17.14 7.29 15.79 11.11 9.59 8.55 15.20 5.56 7.14 6.02 5.63 7.81 10.00 8.97 15.38 8.70 8.82 7.50 12.90 2.22 8.82 6.98 0.00 8.11 8.33 4.76 16.67 6.06 5.88 0.00 4.44 10.20 5.71 8.33 17.65 0.00 13.33 5.56 4.88 13.40 8.70 8.70 6.67 4.17 6.90 5.56 11.50 7.32 4.76 9.68 3.45 0.00 10.26 6.25 1.96 3.70 K jcn_only_AD Ilp6,RI_chrX_2226173_2226308,I_chrX_2226173_2226571 chrX - chrX_2226173_2226376;chrX_2226173_2226571;chrX_2226173_2226308 chrX_2226173_2227352 chrX_2226073_2226172;chrX_2227353_2227719 97.87 100.00 98.00 97.87 98.77 94.55 98.97 99.29 99.01 88.89 96.30 100.00 100.00 100.00 97.70 97.58 96.61 95.52 98.63 99.24 100.00 87.50 99.15 97.40 100.00 100.00 100.00 92.86 87.80 98.33 97.37 91.84 94.03 98.36 98.15 95.92 98.36 98.67 100.00 92.06 89.29 100.00 100.00 95.65 94.64 91.55 97.53 92.86 98.68 97.67 97.25 91.30 100.00 98.51 97.85 100.00 95.61 92.42 K jcn_only_AA CG14133 chr3L - chr3L_11683209_11683325;chr3L_11683229_11683325 chr3L_11683239_11683325 chr3L_11683326_11683412;chr3L_11682731_11683208 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 7.41 K alternative_acceptor wge chr3R - chr3R_18539090_18539306;chr3R_18539087_18539306 chr3R_18539117_18539306 chr3R_18539307_18539565;chr3R_18538527_18539086 100.00 90.00 100.00 100.00 100.00 95.83 91.18 100.00 100.00 100.00 100.00 97.73 100.00 96.15 100.00 100.00 100.00 100.00 93.75 98.18 96.55 97.92 95.35 92.86 95.24 100.00 84.62 93.75 100.00 100.00 94.12 100.00 100.00 100.00 92.86 100.00 92.50 100.00 94.59 96.67 100.00 98.25 100.00 100.00 95.65 95.00 100.00 100.00 96.15 100.00 96.77 94.74 87.50 100.00 96.55 100.00 100.00 93.75 K intron_retention lok,RI_chr2L_20063248_20063377 chr2L + chr2L_20062064_20062147 chr2L_20062063_20062064;chr2L_20062147_20062148 chr2L_20062016_20062063;chr2L_20062148_20062305 10.53 14.29 12.50 4.88 NA 0.00 9.09 14.29 10.53 NA NA 13.16 3.85 15.79 0.00 4.35 NA NA 4.55 14.71 5.56 5.56 12.50 0.00 NA 12.50 12.00 0.00 0.00 21.43 12.50 NA 12.50 17.39 11.11 NA 21.05 NA 16.67 12.50 3.12 5.13 8.70 3.45 0.00 10.71 10.53 3.70 12.82 NA 3.85 0.00 NA NA 10.71 NA NA 25.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2393243 chrX_2387249_2389073;chrX_2389272_2389644;chrX_2389762_2393243 chrX_2389074_2389271;chrX_2389645_2389761 chrX_2387149_2387248;chrX_2393244_2393291 1.35 NA NA NA NA NA NA NA NA NA NA 2.70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_927771_929704,CG32021,RI_chr4_928180_928245,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_928177_928245;chr4_928193_928245 chr4_928180_928245 chr4_928246_928314;chr4_928109_928176 30.95 46.88 31.11 34.62 25.00 31.82 26.45 32.26 26.53 35.19 20.00 32.29 32.43 30.95 34.18 34.29 35.14 26.09 23.91 32.56 27.27 35.63 25.51 27.50 32.31 34.69 36.21 35.96 26.92 30.38 26.00 23.68 30.77 30.43 28.12 34.67 27.85 33.33 32.58 20.16 34.55 33.33 30.00 26.05 24.53 31.08 25.00 28.09 34.02 30.38 23.75 25.45 35.71 27.03 38.18 31.25 31.11 22.92 K intron_retention Anxb11,I_chrX_16314152_16314405,I_chrX_16314152_16315813 chrX - chrX_16314152_16316028 chrX_16314151_16314152;chrX_16316028_16316029 chrX_16314083_16314151;chrX_16316029_16316118 90.00 93.33 90.91 89.29 92.86 86.67 77.78 86.21 86.44 NA 95.83 83.78 100.00 83.33 80.00 89.47 93.33 91.67 94.74 86.67 72.73 100.00 94.44 86.67 92.31 92.31 92.86 87.50 NA 90.91 92.00 NA 100.00 86.21 77.78 90.00 80.00 90.00 90.00 75.00 NA 88.89 92.86 90.32 90.91 76.92 92.31 90.00 87.10 94.44 80.95 90.00 NA 87.50 94.74 88.89 88.24 75.00 K jcn_only_AA CG5455,I_chr3R_22287369_22288750 chr3R + chr3R_22292793_22292853;chr3R_22292793_22292855 chr3R_22292793_22292859 chr3R_22292336_22292792;chr3R_22292860_22293068 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 NA 0.00 0.00 0.00 0.00 1.25 3.23 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG5973,I_chr2L_7441485_7443583,I_chr2L_7443388_7443583 chr2L + chr2L_7440852_7443583;chr2L_7441757_7443583;chr2L_7440959_7443583 chr2L_7440963_7443583 chr2L_7443584_7443683;chr2L_7440710_7440851 29.81 26.83 21.74 25.81 30.91 35.90 30.59 25.60 31.63 30.77 27.08 32.73 22.34 36.51 42.11 27.78 21.21 21.54 26.39 32.64 30.00 17.86 35.37 45.16 21.74 30.00 26.32 NA NA 28.57 39.13 20.00 29.63 31.65 15.38 46.94 38.10 NA 26.00 32.14 NA 32.92 30.36 NA 40.00 23.53 18.75 39.47 33.79 33.33 22.86 33.33 35.56 19.05 28.21 23.81 26.92 17.14 K intron_retention PGRP-LC,E_chr3L_9335847_9338977 chr3L + chr3L_9338168_9338708 chr3L_9338167_9338168;chr3L_9338708_9338709 chr3L_9338000_9338167;chr3L_9338709_9338771 20.00 11.11 30.77 15.00 26.67 28.57 40.00 36.36 12.82 NA NA 19.05 23.08 NA 33.33 21.05 NA 11.11 13.33 15.15 23.08 11.76 10.53 22.22 NA NA 23.08 13.33 NA 11.11 25.00 NA 25.00 29.41 NA NA 12.50 NA 20.00 25.00 NA 24.00 28.57 20.00 20.00 20.00 NA 20.00 23.08 12.50 15.00 NA NA NA NA NA 14.29 19.05 K intron_retention scrib,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22423846_22424298 chr3R_22423845_22423846;chr3R_22424298_22424299 chr3R_22423822_22423845;chr3R_22424299_22424434 23.08 NA NA NA NA NA NA NA 23.08 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.35 28.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG11943 chrX + chrX_19752622_19752695 chrX_19752621_19752622;chrX_19752695_19752696 chrX_19751569_19752621;chrX_19752696_19752853 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.50 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA roq,CG4753 chr3L - chr3L_16367765_16367959 chr3L_16367768_16367959 chr3L_16367960_16370110;chr3L_16367508_16367764 93.77 95.06 91.89 96.77 90.91 92.31 90.48 96.51 93.97 91.18 91.43 93.68 78.26 93.33 93.55 94.74 90.00 97.22 96.00 93.29 83.33 95.06 96.60 93.33 94.44 96.88 94.17 89.06 93.33 98.48 96.88 96.55 87.93 90.53 96.23 96.55 90.91 92.86 93.50 94.05 NA 97.08 95.65 92.73 89.13 96.67 96.39 94.83 93.40 89.09 93.97 95.77 90.70 95.35 88.00 92.86 93.85 94.29 K intron_retention CG15609,C_chr2R_12899322_12900789,I_chr2R_12902708_12903184 chr2R - chr2R_12900280_12900789 chr2R_12900279_12900280;chr2R_12900789_12900790 chr2R_12899457_12900279;chr2R_12900790_12900889 0.00 0.00 2.70 0.00 0.00 0.00 3.28 1.56 0.94 0.00 0.00 1.69 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.08 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 1.56 0.00 1.61 0.00 0.00 NA 0.00 0.00 0.00 0.00 K jcn_only_AA CG10188 chr2L - chr2L_19508262_19508325 chr2L_19508266_19508325 chr2L_19508326_19508760;chr2L_19507490_19508261 88.48 81.82 NA NA NA NA 90.48 84.00 92.86 NA NA 86.96 NA NA NA 80.00 NA NA NA 80.65 NA 93.33 NA NA NA NA NA NA 95.45 NA NA NA 80.95 84.00 NA NA NA NA NA 95.00 NA 90.00 NA NA NA NA NA 96.67 85.71 NA 100.00 NA NA NA NA NA NA NA K intron_retention ATPCL,RFI_chr2R_11883823_11884399,I_chr2R_11887476_11888411 chr2R - chr2R_11885509_11885571 chr2R_11885508_11885509;chr2R_11885571_11885572 chr2R_11884782_11885508;chr2R_11885572_11885757 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor CkIIalpha,I_chr3L_23092989_23093344,RI_chr3L_23094196_23095221 chr3L + chr3L_23092824_23093344;chr3L_23092824_23092891 chr3L_23092824_23093319 chr3L_23092680_23092823;chr3L_23093345_23093444 12.50 9.09 9.09 13.33 NA NA 10.53 13.33 8.00 NA NA 0.00 16.67 7.69 0.00 9.09 NA 0.00 0.00 18.18 NA NA 11.11 12.50 14.29 NA NA 33.33 NA NA 28.57 NA 14.29 7.14 14.29 40.00 NA NA NA 18.18 NA 0.00 16.67 0.00 NA NA NA NA 7.69 NA NA 16.67 NA NA 0.00 16.67 16.67 25.00 K cassette Oatp30B,I_chr2L_9521441_9533513,RI_chr2L_9521477_9523162,I_chr2L_9533752_9534868 chr2L + chr2L_9523344_9534886 chr2L_9523344_9533513;chr2L_9533752_9534886 chr2L_9533514_9533751 chr2L_9523332_9523343;chr2L_9534887_9534968 100.00 100.00 85.71 83.33 100.00 100.00 88.89 70.00 94.12 100.00 100.00 90.91 100.00 83.33 100.00 100.00 85.71 100.00 100.00 100.00 83.33 70.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 87.50 80.00 100.00 90.00 NA 100.00 80.00 100.00 NA 100.00 NA 92.31 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 K cassette alph,I_chr3R_25417890_25422962 chr3R + chr3R_25423196_25442776 chr3R_25423196_25430231;chr3R_25430304_25442776 chr3R_25430232_25430303 chr3R_25423141_25423195;chr3R_25442777_25442845 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CaMKII,I_chr4_1059085_1065781,RI_chr4_1061742_1064093,RI_chr4_1061742_1065781,I_chr4_1061989_1065781,RI_chr4_1063745_1065781,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,RI_chr4_1071489_1071968,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1059064_1065781;chr4_1059061_1065781;chr4_1059085_1065781;chr4_1060705_1065781 chr4_1060705_1064093,chr4_1059061_1064093,chr4_1059064_1064093,chr4_1059085_1064093;chr4_1064151_1065781 chr4_1064094_1064150 chr4_1059054_1059060;chr4_1065782_1065874 31.82 47.83 43.24 43.21 32.00 39.29 25.32 37.18 29.27 NA 36.36 27.40 26.09 31.82 26.32 38.75 42.11 13.33 29.09 27.37 37.14 35.71 42.86 36.36 62.50 24.14 23.81 25.00 16.67 39.13 44.26 25.64 24.14 30.43 40.91 20.00 43.75 33.33 28.57 25.00 43.75 34.92 31.82 29.03 17.86 28.57 34.78 21.95 31.87 37.93 45.00 29.17 26.09 29.17 25.00 38.71 35.90 20.51 K intron_retention eIF2B-delta chr2R + chr2R_19274146_19274464 chr2R_19274145_19274146;chr2R_19274464_19274465 chr2R_19274016_19274145;chr2R_19274465_19275135 91.67 NA NA 75.00 NA NA 83.33 100.00 100.00 NA 87.50 94.12 92.31 NA NA 100.00 NA NA 90.00 91.67 NA NA 90.00 NA NA NA 100.00 91.67 100.00 100.00 NA NA NA 88.89 NA NA NA NA NA 100.00 88.89 100.00 NA NA NA 87.50 88.89 NA 90.91 87.50 100.00 88.89 NA NA NA NA NA NA K jcn_only_AD Btk29A,I_chr2L_8262681_8277370,I_chr2L_8298341_8298782,I_chr2L_8298341_8300884 chr2L - chr2L_8298341_8300817;chr2L_8298341_8300714 chr2L_8298341_8300505 chr2L_8298241_8298340;chr2L_8300818_8301040 88.68 94.44 89.74 86.87 97.22 86.11 86.05 80.26 90.08 91.92 80.70 81.97 83.64 88.24 77.97 76.71 89.13 91.43 90.38 91.80 88.64 91.36 90.11 89.66 88.68 84.44 89.61 80.39 89.68 89.01 90.91 89.58 93.94 88.06 90.24 92.31 92.80 89.47 86.21 89.43 88.33 79.31 81.25 92.06 94.12 88.89 86.79 90.91 82.22 86.44 83.12 75.00 87.50 70.97 74.63 87.50 79.17 90.59 K multi_cassette CG4662,I_chr3R_15676853_15676928 chr3R + chr3R_15676853_15677741 chr3R_15676853_15677063;chr3R_15677142_15677553;chr3R_15677641_15677741 chr3R_15677064_15677141;chr3R_15677554_15677640 chr3R_15676787_15676852;chr3R_15677742_15678147 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 87.50 88.89 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG32529 chrX + chrX_19781447_19793044 chrX_19781526_19793044 chrX_19793045_19793075;chrX_19781430_19781446 36.28 NA 22.73 45.00 NA 38.10 37.93 45.71 28.99 NA NA 32.65 37.50 32.26 NA 35.14 NA 33.33 53.33 32.00 NA 35.48 15.09 20.00 NA NA NA NA NA 51.85 35.71 NA NA 51.11 NA 36.84 NA NA NA 38.46 NA 44.74 NA 31.82 NA NA NA 85.71 39.39 NA 21.62 24.00 NA NA 47.83 NA NA NA K intron_retention f-cup,I_chr3R_9523147_9523556,EI_chr3R_9523187_9523556,I_chr3R_9524004_9524059,EI_chr3R_9524613_9524789 chr3R - chr3R_9523369_9523556 chr3R_9523368_9523369;chr3R_9523556_9523557 chr3R_9523245_9523368;chr3R_9523557_9523656 0.00 NA 0.00 0.00 NA NA 0.00 3.57 2.86 NA 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA 0.00 NA 4.55 NA NA NA 0.00 NA NA NA K alternative_acceptor CG4065,RI_chr2R_20024231_20024292,I_chr2R_20024873_20024921 chr2R - chr2R_20024859_20024921 chr2R_20024873_20024921 chr2R_20024922_20025021;chr2R_20024773_20024858 0.00 2.70 0.00 0.00 0.00 2.94 0.00 2.78 0.00 3.45 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 1.15 0.00 2.44 0.00 2.00 0.00 0.00 1.82 0.00 1.54 1.67 6.52 1.92 3.70 0.00 0.00 0.00 0.00 2.38 1.92 1.32 1.75 1.32 0.00 2.78 0.00 1.54 0.00 2.84 0.00 0.00 0.00 0.00 0.00 3.57 2.17 2.38 0.00 0.93 K cassette ras chrX + chrX_10638695_10639710 chrX_10638695_10638862;chrX_10639523_10639710 chrX_10638863_10639522 chrX_10638539_10638694;chrX_10639711_10639997 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 87.50 100.00 100.00 K jcn_only_AA Eph,I_chr4_639690_640473,I_chr4_640410_640485,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_640410_640485 chr4_640410_640473 chr4_640310_640409;chr4_640486_640573 100.00 100.00 100.00 98.97 97.73 98.04 100.00 98.18 99.00 100.00 98.00 98.25 100.00 100.00 97.96 100.00 100.00 100.00 98.70 99.14 100.00 100.00 100.00 97.96 100.00 98.15 98.04 NA 98.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.14 100.00 98.25 100.00 99.20 94.87 99.14 98.17 100.00 100.00 98.04 100.00 100.00 100.00 98.18 100.00 99.07 N alternative_acceptor Hrb98DE,RI_chr3R_24429041_24431183 chr3R + chr3R_24429421_24429573;chr3R_24429421_24431183 chr3R_24429421_24429782 chr3R_24429330_24429420;chr3R_24431184_24431283 97.44 98.20 98.46 97.82 97.14 97.17 98.14 97.88 97.66 98.31 99.10 94.56 95.58 96.24 98.15 98.17 98.92 96.52 99.12 98.45 97.78 99.41 96.57 96.69 98.91 99.23 98.40 96.00 97.44 95.53 96.20 96.90 98.28 98.17 96.54 97.12 96.60 97.28 96.83 95.39 99.31 97.77 98.87 97.06 93.36 96.87 96.05 97.70 97.41 98.68 97.44 98.12 91.89 97.39 98.54 97.28 94.89 93.92 K intron_retention CG1622,REI_chrX_13191277_13191339,RI_chrX_13191703_13191779,I_chrX_13191916_13192167,I_chrX_13192409_13192738,EI_chrX_13192857_13192928 chrX + chrX_13191703_13191779 chrX_13191702_13191703;chrX_13191779_13191780 chrX_13191691_13191702;chrX_13191780_13191847 22.06 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 63.64 41.67 8.33 NA NA NA 14.29 NA NA 26.67 21.05 NA NA 46.15 NA NA NA NA 14.29 NA NA 5.56 NA NA NA NA NA NA NA NA NA 23.08 N intron_retention Xrp1,I_chr3R_14741648_14750799,I_chr3R_14750298_14750799 chr3R + chr3R_14749868_14750009 chr3R_14749867_14749868;chr3R_14750009_14750010 chr3R_14749792_14749867 22.73 NA NA 17.86 NA NA 100.00 NA 31.25 NA NA 30.77 NA NA NA NA NA NA NA NA NA 0.00 9.09 NA NA NA 23.53 22.73 NA NA NA NA NA NA NA NA NA NA NA 10.53 18.75 29.41 NA 8.33 NA NA NA NA 33.33 16.67 26.67 NA NA NA NA NA NA NA K intron_retention CG4068,I_chrX_4824099_4824170,I_chrX_4824099_4825031,RI_chrX_4824099_4829423 chrX - chrX_4824099_4832007 chrX_4824098_4824099;chrX_4832007_4832008 chrX_4823999_4824098;chrX_4832008_4832103 0.00 0.00 3.33 9.38 0.00 0.00 2.78 0.00 0.00 NA 0.00 3.12 0.00 0.00 4.35 3.70 4.55 0.00 6.25 0.00 0.00 NA 7.41 NA NA 0.00 9.52 NA NA 12.50 7.69 NA 8.33 4.44 0.00 14.29 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 5.88 1.67 NA 0.00 NA NA NA 0.00 NA NA 0.00 K alternative_acceptor stc chr2L + chr2L_15114235_15114311 chr2L_15114235_15114299 chr2L_15113511_15114234;chr2L_15114312_15115753 93.33 85.71 90.91 95.00 87.50 84.62 87.50 95.24 88.89 93.75 100.00 100.00 81.25 100.00 92.00 92.86 84.62 92.86 90.00 93.94 90.00 95.83 96.67 95.83 95.45 84.62 94.74 87.10 89.29 95.45 84.21 100.00 96.00 89.47 100.00 89.66 95.00 93.75 96.00 92.59 100.00 95.83 91.67 93.55 94.44 96.55 91.67 90.38 94.44 92.86 93.75 94.12 90.00 90.00 89.47 93.75 88.24 93.33 K cassette CG7546 chr3L + chr3L_7506493_7506917 chr3L_7506493_7506622;chr3L_7506722_7506917 chr3L_7506623_7506721 chr3L_7505886_7506492;chr3L_7506918_7507454 4.17 6.38 3.17 4.55 4.26 2.13 3.49 2.99 4.17 8.00 0.00 9.68 3.85 2.17 2.27 6.85 4.17 2.00 3.92 2.82 2.08 5.08 5.00 6.67 7.89 6.38 4.94 9.09 5.13 2.04 2.38 6.45 3.85 3.53 2.78 2.94 6.12 4.55 3.37 6.15 6.45 3.30 6.45 11.11 7.69 3.39 6.25 7.32 3.80 1.96 2.70 3.45 3.23 4.35 3.23 5.00 3.85 6.67 K jcn_only_AD Crc,Scm chr3R - chr3R_5455338_5455459 chr3R_5455338_5455429 chr3R_5454930_5455337;chr3R_5455460_5455902 100.00 100.00 100.00 99.96 100.00 100.00 100.00 100.00 100.00 99.93 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.95 99.88 100.00 100.00 99.89 99.96 100.00 100.00 99.93 100.00 100.00 100.00 99.95 100.00 100.00 100.00 99.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.93 100.00 100.00 100.00 99.96 99.97 K intron_retention CG16940,I_chr3L_212740_212843,I_chr3L_212783_212843,noncoding_9585,Kaz1-ORFA_Kaz1-ORFB chr3L + chr3L_212788_212843 chr3L_212787_212788;chr3L_212843_212844 chr3L_212759_212787;chr3L_212844_212943 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 NA K jcn_only_AD CG11984,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4839215_4840474;chr3R_4839215_4840589 chr3R_4839215_4840394 chr3R_4839038_4839214;chr3R_4840590_4840610 3.39 0.00 5.00 2.22 4.76 0.00 14.29 8.16 3.85 NA 5.71 2.78 3.85 15.15 0.00 4.26 17.39 3.70 7.14 1.82 0.00 4.17 5.56 NA NA 9.09 4.88 0.00 0.00 2.63 2.94 0.00 0.00 3.33 0.00 3.12 2.17 5.00 NA 2.20 0.00 4.35 14.29 0.00 5.56 5.71 6.25 5.26 1.75 8.82 0.00 0.00 0.00 NA 0.00 3.45 8.82 1.64 K intron_retention CG34449,RI_chrX_9232665_9233022,RI_chrX_9249209_9250033,RI_chrX_9249212_9250033,RI_chrX_9249212_9250244 chrX - chrX_9232482_9232545 chrX_9232481_9232482;chrX_9232545_9232546 chrX_9232324_9232481;chrX_9232546_9232664 0.00 0.00 0.00 3.85 7.14 0.00 7.41 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 NA 1.89 0.00 0.00 6.25 12.50 0.00 0.00 22.86 0.00 0.00 NA 0.00 2.70 0.00 16.67 0.00 4.55 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 5.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545781_17545855 chr2R_17545781_17545850 chr2R_17545730_17545780;chr2R_17545856_17545985 80.00 87.50 NA 73.91 NA 75.00 79.55 77.42 85.11 85.71 69.57 78.38 NA NA 81.48 83.33 NA 62.07 NA 79.55 80.00 NA 63.16 72.22 NA NA 90.91 NA 82.00 82.61 77.27 82.14 95.65 75.86 NA NA 76.60 77.78 81.08 84.44 78.26 78.79 NA 92.31 82.76 76.00 84.62 100.00 67.86 92.86 89.19 95.65 80.00 76.60 93.10 76.09 78.26 80.00 K intron_retention dorsal,RI_chr2L_17438018_17439189,FI_chr2L_17449369_17450215,noncoding_3500,RI_chr2L_17450002_17450219 chr2L - chr2L_17449369_17449875 chr2L_17449368_17449369;chr2L_17449875_17449876 chr2L_17449296_17449368;chr2L_17449876_17449887 25.00 NA NA 15.38 NA NA 26.32 30.77 25.00 NA NA 53.85 NA NA NA 26.09 NA NA 20.00 25.00 NA NA 30.77 NA NA NA 69.23 NA NA NA NA NA NA 18.75 NA NA NA NA NA 18.75 NA 38.46 NA NA NA NA NA 11.54 33.33 NA 25.00 NA NA NA NA NA NA 0.00 K cassette CG30497,I_chr2R_3629384_3665979,I_chr2R_3629426_3669231,I_chr2R_3641074_3665979 chr2R - chr2R_3629426_3669231 chr2R_3629426_3665979;chr2R_3667391_3669231 chr2R_3665980_3667390 chr2R_3629326_3629425;chr2R_3669232_3669331 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.35 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.28 100.00 100.00 100.00 K jcn_only_AA CG4049,I_chr2R_20000795_20001276 chr2R - chr2R_19996166_19996223 chr2R_19996175_19996223 chr2R_19996224_19996457;chr2R_19995429_19996165 98.15 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 96.30 NA NA NA NA NA NA NA NA NA NA NA NA NA 95.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor RI_chrX_7172561_7252693,CG1677 chrX - chrX_7175780_7175855 chrX_7175783_7175855 chrX_7175856_7175993;chrX_7175138_7175779 69.44 73.33 68.57 70.00 66.67 72.73 66.67 67.39 66.67 73.68 54.55 64.29 78.95 78.26 71.88 64.00 77.27 70.97 66.67 61.22 72.00 79.41 64.00 73.81 55.00 72.00 69.44 82.35 64.29 82.61 76.67 80.00 66.67 74.47 77.78 63.64 65.96 69.23 60.61 75.68 68.75 77.05 64.00 74.19 77.42 66.67 78.12 70.00 68.42 73.47 64.10 64.29 65.52 65.00 67.57 70.21 70.37 68.89 K jcn_only_AA CG2698,I_chr3R_3828169_3828941,I_chr3R_3828880_3828941,I_chr3R_3829483_3829715,I_chr3R_3830586_3830981 chr3R + chr3R_3829483_3829697;chr3R_3829483_3829709;chr3R_3829483_3829721 chr3R_3829483_3829555 chr3R_3829383_3829482;chr3R_3829722_3829815 18.18 11.76 21.43 13.11 5.88 10.34 10.71 7.41 24.14 NA 8.11 22.22 27.59 17.65 8.16 14.89 13.64 NA 7.14 13.73 18.18 41.38 15.38 32.26 40.82 16.33 16.36 22.22 19.67 26.19 35.82 12.12 47.62 6.67 30.23 30.77 18.18 20.37 24.62 25.68 31.25 8.75 17.65 23.81 15.00 23.53 15.38 22.00 17.46 34.92 26.09 21.21 19.23 24.44 7.41 23.08 13.21 14.71 K intron_retention TH1 chrX - chrX_16283361_16283428 chrX_16283360_16283361;chrX_16283428_16283429 chrX_16282721_16283360;chrX_16283429_16283910 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 1.60 0.00 0.00 1.49 0.00 2.78 5.63 0.00 0.00 1.75 1.82 1.04 0.00 0.00 2.24 0.00 3.03 2.90 6.38 8.82 4.35 0.00 0.00 2.11 2.86 0.00 0.00 0.00 0.00 2.33 0.89 0.00 1.03 1.64 0.00 0.00 2.34 2.26 4.17 0.00 1.57 1.85 0.00 0.00 0.00 1.05 3.16 0.00 0.93 0.00 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2814327_2817753 chr2R_2814327_2814894;chr2R_2815654_2816013;chr2R_2816342_2816577;chr2R_2816779_2817459;chr2R_2817604_2817753 chr2R_2814895_2815653;chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817460_2817603 chr2R_2814227_2814326;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 K intron_retention CG3209,I_chr2R_19957751_19959513,RI_chr2R_19957766_19960227,I_chr2R_19959163_19959513 chr2R + chr2R_19958528_19959513 chr2R_19958527_19958528;chr2R_19959513_19959514 chr2R_19958291_19958527;chr2R_19959514_19959528 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 NA NA 100.00 84.21 NA NA 100.00 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA NA NA 100.00 NA NA K intron_retention trio,I_chr3L_999683_1009321 chr3L - chr3L_1024408_1024465 chr3L_1024407_1024408;chr3L_1024465_1024466 chr3L_1024204_1024407;chr3L_1024466_1026346 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 6.52 NA 0.00 2.63 0.00 0.00 0.00 0.00 8.11 0.00 0.00 0.00 0.00 2.90 NA 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 1.82 0.00 14.29 0.00 0.00 3.70 0.00 NA K jcn_only_AA CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157794_157864 chr4 + chr4_157794_157864 chr4_157794_157848 chr4_157699_157793;chr4_157865_157958 100.00 100.00 98.73 100.00 100.00 96.05 99.48 100.00 99.06 96.43 100.00 99.51 98.84 99.05 98.92 99.61 98.97 100.00 99.31 99.43 100.00 100.00 100.00 100.00 100.00 100.00 98.21 100.00 100.00 100.00 99.29 NA 100.00 98.98 98.25 100.00 97.22 100.00 100.00 98.44 100.00 100.00 100.00 100.00 NA 100.00 100.00 98.21 99.55 100.00 100.00 100.00 95.45 NA 100.00 100.00 NA 100.00 K alternative_acceptor Abi,RI_chr3R_9946195_9946332 chr3R - chr3R_9946505_9946568 chr3R_9946508_9946568 chr3R_9946569_9946637;chr3R_9946417_9946504 82.80 83.17 82.67 82.86 83.08 89.86 83.13 82.80 77.64 81.13 87.72 83.09 77.27 79.31 85.23 81.97 86.79 93.85 82.54 80.99 79.71 79.52 83.33 87.61 85.54 78.38 80.17 78.95 80.25 84.11 80.28 85.51 80.00 87.88 85.37 88.89 77.38 78.00 79.27 78.95 84.72 82.64 84.21 84.27 77.48 87.62 75.76 83.91 78.79 84.06 77.19 81.13 82.83 87.10 82.67 79.27 86.99 87.74 K intron_retention CG3499,I_chr2R_18772777_18772819 chr2R - chr2R_18771815_18771870 chr2R_18771814_18771815;chr2R_18771870_18771871 chr2R_18771424_18771814;chr2R_18771871_18772184 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 1.32 1.64 2.37 0.00 0.89 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 K alternative_acceptor B4,I_chr2L_13513474_13549131,I_chr2L_13547133_13549131,I_chr2L_13547162_13547692,I_chr2L_13547304_13549131 chr2L - chr2L_13547162_13549131;chr2L_13547133_13549131 chr2L_13547304_13549131 chr2L_13549132_13549231;chr2L_13547062_13547132 21.59 18.18 25.00 11.11 25.00 25.00 42.86 30.00 26.09 16.67 14.29 31.82 33.33 25.00 40.00 36.36 36.36 42.86 31.25 15.38 10.00 14.29 18.18 9.09 15.38 18.18 26.32 17.65 12.50 13.04 29.41 25.00 21.74 38.89 16.67 29.41 20.00 15.38 15.00 13.04 18.75 33.33 30.00 23.81 18.75 9.09 11.76 14.29 33.33 17.65 18.75 25.00 NA 10.00 33.33 21.43 28.57 22.22 K alternative_acceptor CG5664,RI_chr3L_21432841_21432888 chr3L - chr3L_21432832_21432888 chr3L_21432841_21432888 chr3L_21432889_21432988;chr3L_21432741_21432831 12.50 28.57 NA 30.00 NA NA 15.38 7.41 11.11 NA 6.25 20.00 28.57 NA NA 15.79 NA 7.69 12.50 9.38 NA 9.52 9.09 15.00 NA NA 12.00 26.32 12.50 14.29 10.53 NA 13.04 19.05 NA 12.50 16.67 12.50 10.53 13.04 25.00 14.29 NA NA NA 5.88 10.00 NA 13.04 10.00 12.00 NA NA NA 15.00 12.50 6.90 NA K intron_retention CG17754 chrX + chrX_9144597_9144660 chrX_9144596_9144597;chrX_9144660_9144661 chrX_9144495_9144596;chrX_9144661_9145062 83.33 85.71 78.95 87.50 90.00 87.50 92.31 83.33 78.26 75.00 NA 68.97 73.33 90.00 85.00 94.12 NA 92.31 75.00 83.33 88.89 67.86 90.00 92.86 91.67 90.00 92.86 NA 80.95 78.57 89.47 90.91 94.74 86.96 88.89 94.74 72.00 90.91 68.18 75.00 90.91 79.31 NA 80.00 64.29 73.68 82.35 80.77 73.91 NA 76.47 88.89 69.23 80.00 78.57 NA 60.00 81.25 K intron_retention CG1172 chr3R + chr3R_1220116_1220199 chr3R_1220115_1220116;chr3R_1220199_1220200 chr3R_1219953_1220115;chr3R_1220200_1220265 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.93 3.64 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon CG2930 chrX + chrX_3771492_3773039 chrX_3771492_3771660 chrX_3773040_3773247 chrX_3771661_3772905 chrX_3771437_3771491 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 92.31 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 94.44 100.00 100.00 100.00 100.00 100.00 90.91 80.00 92.31 100.00 100.00 100.00 100.00 95.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG11266,RI_chr2L_7033019_7034764,I_chr2L_7034274_7035406,RI_chr2L_7034911_7035074,I_chr2L_7051093_7051366 chr2L + chr2L_7036036_7036187 chr2L_7036036_7036184 chr2L_7035637_7036035;chr2L_7036188_7036722 98.07 94.52 100.00 98.53 94.87 96.67 97.56 100.00 96.77 98.36 100.00 100.00 100.00 100.00 100.00 100.00 91.67 97.87 96.00 94.06 100.00 97.09 97.76 97.10 97.59 100.00 98.78 98.21 98.55 97.06 98.21 100.00 98.33 93.83 96.15 NA 98.41 98.61 96.19 97.04 100.00 94.06 100.00 97.47 100.00 98.63 93.10 96.63 95.10 98.33 98.20 96.49 100.00 98.48 95.65 96.25 94.44 97.94 K alternative_acceptor CG9636,RI_chr3R_4068335_4068401 chr3R - chr3R_4068299_4068401 chr3R_4068335_4068401 chr3R_4068402_4068501;chr3R_4068235_4068298 0.00 2.94 0.00 1.41 0.00 0.00 0.00 2.13 1.49 3.33 0.00 2.00 0.00 0.00 0.00 1.92 4.55 0.00 3.45 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 2.38 1.85 0.00 0.00 0.00 0.00 0.00 6.25 3.85 1.82 0.00 2.04 0.00 0.00 0.00 0.00 1.92 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 K jcn_only_AD CG32758 chrX - chrX_5615236_5615299 chrX_5615236_5615294 chrX_5613769_5615235;chrX_5615300_5615729 23.03 NA NA NA NA NA 45.95 NA 23.33 NA NA 35.00 NA NA 0.00 NA NA 29.09 NA 25.81 NA 25.00 19.05 NA NA NA NA NA 31.82 26.67 NA NA 25.81 NA 25.00 18.18 15.00 NA 20.83 17.86 NA 20.83 NA 18.18 NA NA 14.81 NA 21.74 NA 22.73 NA NA NA NA NA 35.00 NA K cassette raw,I_chr2L_8712599_8712673,I_chr2L_8735201_8735693 chr2L - chr2L_8713371_8740384 chr2L_8713371_8734466;chr2L_8735201_8740384 chr2L_8734467_8735200 chr2L_8713264_8713370;chr2L_8740385_8740662 100.00 100.00 100.00 100.00 100.00 100.00 98.15 100.00 100.00 100.00 96.77 100.00 96.88 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 98.99 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.61 97.44 100.00 100.00 98.51 100.00 100.00 100.00 100.00 98.63 99.00 100.00 100.00 100.00 98.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette CG13743,I_chr2R_4938297_4938347 chr2R - chr2R_4935532_4937384 chr2R_4935532_4935680;chr2R_4935843_4937384 chr2R_4935681_4935842 chr2R_4935419_4935531;chr2R_4937385_4937566 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA 80.00 NA NA NA NA 100.00 N alternative_acceptor Fer1HCH,I_chr3R_26212319_26213496,I_chr3R_26213132_26213185 chr3R - chr3R_26211964_26212040 chr3R_26211979_26212040 chr3R_26212041_26212109;chr3R_26211898_26211963 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.64 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CtBP chr3R + chr3R_8837594_8845063 chr3R_8837593_8837594;chr3R_8845063_8845064 chr3R_8837487_8837593;chr3R_8845064_8845536 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 K jcn_only_AD CG7971,I_chr3L_1659363_1659845,I_chr3L_1667736_1667806 chr3L - chr3L_1659991_1661226 chr3L_1659991_1661108 chr3L_1659846_1659990 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.20 100.00 100.00 100.00 100.00 100.00 100.00 99.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG11151 chrX + chrX_13634146_13634710 chrX_13634145_13634146;chrX_13634710_13634711 chrX_13633982_13634145;chrX_13634711_13635156 0.26 0.24 0.64 0.51 0.00 0.26 0.00 0.48 0.62 0.37 0.90 0.55 0.00 0.34 0.43 0.26 0.38 0.00 0.00 0.37 0.00 0.77 0.47 0.22 1.50 0.00 0.70 1.62 0.00 0.19 0.00 0.00 0.00 0.00 0.26 0.00 0.41 0.47 0.46 0.30 0.00 0.52 0.30 0.00 0.43 0.00 0.39 0.00 0.44 0.00 0.64 0.00 0.23 0.00 0.00 0.23 0.00 0.08 K alternative_donor CG3631 chr3R + chr3R_10705801_10705885;chr3R_10705805_10705885 chr3R_10705766_10705885 chr3R_10705886_10706516;chr3R_10705554_10705765 62.02 NA NA NA NA NA 61.54 NA 61.54 NA NA 71.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 58.33 NA NA NA NA NA 50.00 NA 70.00 NA NA NA NA NA NA 66.67 NA NA NA NA NA 62.50 NA NA NA K alternative_donor Roughened,I_chr3L_1861677_1861777,I_chr3L_1861677_1861929,I_chr3L_1861677_1862177 chr3L - chr3L_1861677_1862060;chr3L_1861677_1862177 chr3L_1861677_1861777 chr3L_1861577_1861676;chr3L_1862178_1862277 3.01 2.22 3.26 9.63 2.92 2.67 5.61 2.97 2.21 3.45 2.65 2.43 2.27 1.39 3.24 3.66 3.76 3.61 3.18 1.93 1.94 23.47 3.16 3.17 6.98 6.21 8.54 11.90 6.55 1.33 3.16 2.70 2.95 2.54 4.08 2.45 3.28 2.55 3.41 4.07 7.14 3.01 2.07 4.05 3.16 2.07 2.48 2.67 1.96 3.64 3.63 2.67 2.72 1.75 3.05 1.27 2.04 1.57 K jcn_only_AA Cf2,I_chr2L_4882802_4882864 chr2L - chr2L_4882802_4882864;chr2L_4882493_4882864 chr2L_4882366_4882864 chr2L_4882865_4882964;chr2L_4881215_4882365 8.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA NA 20.69 NA NA NA NA NA NA NA 8.33 NA NA NA NA NA NA NA NA NA NA K jcn_only_AA Mtch,RI_chr3L_184729_185366,I_chr3L_185367_185925 chr3L + chr3L_184682_184777 chr3L_184682_184774 chr3L_184674_184681;chr3L_184778_184854 58.81 NA 59.26 41.67 54.55 38.10 61.90 59.09 68.89 NA 61.90 65.52 54.55 75.00 68.75 NA NA NA NA 55.56 60.87 NA NA NA NA NA NA NA NA NA 46.15 NA NA 62.50 NA NA NA NA NA 46.67 NA 64.44 70.00 NA 57.58 NA NA 48.57 58.54 NA NA NA NA NA 57.50 NA NA 47.06 K multi_cassette CG41099,R_chr3RHet_1688501_1702556,I_chr3RHet_1688505_1705884,RI_chr3RHet_1703294_1705884 chr3RHet - chr3RHet_1688505_1705884 chr3RHet_1688505_1702560;chr3RHet_1703294_1705736;chr3RHet_1705816_1705884 chr3RHet_1702561_1703293;chr3RHet_1705737_1705815 chr3RHet_1688405_1688504;chr3RHet_1705885_1705984 100.00 100.00 100.00 92.86 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG2478,I_chr2L_20653491_20653552 chr2L - chr2L_20654704_20654757 chr2L_20654703_20654704;chr2L_20654757_20654758 chr2L_20653856_20654703;chr2L_20654758_20655522 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 K intron_retention Tango2,RI_chrX_13543535_13546911,I_chrX_13544101_13544542 chrX + chrX_13511140_13511210 chrX_13511139_13511140;chrX_13511210_13511211 chrX_13511098_13511139;chrX_13511211_13511253 87.50 91.67 81.82 100.00 88.89 NA 75.00 91.67 89.47 90.00 NA 100.00 100.00 91.67 88.89 93.75 100.00 NA 100.00 94.74 NA 71.43 78.26 81.82 100.00 88.89 93.75 71.43 95.00 80.00 93.33 72.22 88.89 100.00 69.23 NA 80.00 87.50 94.12 77.42 76.47 92.31 87.50 65.38 65.00 80.00 87.50 75.00 78.57 80.00 75.00 81.25 NA 80.00 87.50 83.33 91.67 84.62 K cassette lqf,I_chr3L_7522287_7522807 chr3L + chr3L_7528745_7530075 chr3L_7528745_7529103;chr3L_7529536_7530075 chr3L_7529104_7529535 chr3L_7528643_7528744;chr3L_7530076_7530479 6.78 5.97 7.69 5.26 2.17 1.85 10.47 6.74 7.64 9.68 10.00 14.66 4.44 5.77 6.35 10.14 14.00 7.84 3.57 16.94 13.85 2.44 6.06 4.88 7.14 5.26 5.68 4.17 9.33 5.71 13.33 4.55 7.41 9.30 9.30 15.25 6.90 5.48 3.53 6.62 5.45 6.15 6.38 8.08 6.35 9.72 6.02 7.94 7.69 2.74 6.82 3.64 15.38 7.14 5.95 6.78 7.23 12.50 K cassette B52,E_chr3R_9488770_9491174 chr3R + chr3R_9491624_9492140 chr3R_9491624_9491805;chr3R_9491971_9492140 chr3R_9491806_9491970 chr3R_9491312_9491623;chr3R_9492141_9492586 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.69 100.00 99.69 100.00 100.00 100.00 100.00 100.00 100.00 99.59 100.00 100.00 100.00 99.58 100.00 99.88 99.87 100.00 99.25 100.00 99.80 99.14 99.79 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.72 100.00 100.00 100.00 99.81 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG8301 chr3R + chr3R_5410293_5410937 chr3R_5410292_5410293;chr3R_5410937_5410938 chr3R_5410206_5410292;chr3R_5410938_5411408 0.00 NA 0.00 14.29 NA 0.00 7.14 23.53 0.00 NA NA 0.00 NA NA NA NA NA 10.53 NA 0.00 NA 16.67 NA NA NA NA NA NA 0.00 NA NA NA 0.00 5.56 NA NA NA NA 0.00 0.00 NA 0.00 NA NA 13.33 0.00 NA 0.00 7.69 0.00 NA NA NA NA NA 7.69 NA 0.00 K intron_retention I_chr3R_23069667_23070365,CG5987,pll chr3R - chr3R_23077573_23077635 chr3R_23077572_23077573;chr3R_23077635_23077636 chr3R_23076862_23077572;chr3R_23077636_23078301 1.89 2.04 0.00 2.60 2.33 2.38 4.23 3.70 5.17 3.85 2.94 3.03 0.00 6.06 3.17 1.72 0.00 0.00 5.41 0.84 0.00 7.02 0.00 0.00 0.00 3.85 6.90 0.00 0.00 5.00 0.00 0.00 8.16 1.67 2.78 0.00 1.33 0.00 0.00 2.00 0.00 1.89 10.00 2.00 1.56 4.69 0.00 0.00 5.81 4.55 4.62 2.17 0.00 1.72 3.51 0.00 0.00 0.00 K jcn_only_AA CG8478,CREF_chr3R_5589662_5589762 chr3R + chr3R_5589658_5589762;chr3R_5589658_5589759 chr3R_5589658_5589747 chr3R_5589562_5589657;chr3R_5589763_5589862 2.44 0.00 1.54 2.41 2.86 5.56 2.04 1.33 3.66 0.00 2.27 2.00 2.94 10.00 6.25 4.41 0.00 0.00 0.00 3.42 4.17 2.44 1.79 0.00 3.57 1.89 3.85 8.70 2.78 2.60 2.17 1.92 3.23 5.19 0.00 6.98 0.00 0.00 1.67 3.19 2.44 2.27 4.65 4.26 9.72 2.00 2.56 1.10 2.02 3.57 1.75 3.03 9.09 3.33 2.33 0.00 NA 3.41 K alternative_donor CG31365,RI_chr3R_18950724_18950786,RI_chr3R_18950918_18950979 chr3R - chr3R_18950724_18950786 chr3R_18950724_18950783 chr3R_18950655_18950723;chr3R_18950787_18950846 100.00 87.50 100.00 93.75 NA 88.89 90.00 100.00 90.48 NA NA 92.86 100.00 NA 87.50 100.00 NA 87.50 90.91 94.44 100.00 100.00 91.67 100.00 NA 100.00 NA NA 100.00 100.00 NA 100.00 95.24 100.00 NA 90.00 100.00 NA 92.86 94.12 100.00 89.47 NA NA NA 100.00 100.00 100.00 93.75 100.00 100.00 88.89 100.00 100.00 90.00 90.91 100.00 95.00 K intron_retention RhoGAP93B chr3R - chr3R_16910199_16910259 chr3R_16910198_16910199;chr3R_16910259_16910260 chr3R_16910075_16910198;chr3R_16910260_16910376 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG6151,I_chr3L_15806727_15808816 chr3L - chr3L_15805342_15806345 chr3L_15805998_15806345 chr3L_15806346_15806453;chr3L_15805029_15805341 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.91 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG13384 chr2L + chr2L_8386386_8386474;chr2L_8386386_8386486 chr2L_8386386_8386483 chr2L_8386217_8386385;chr2L_8386487_8387378 32.83 32.57 35.63 33.52 35.12 34.16 34.36 33.93 32.64 30.19 32.47 33.23 34.58 33.23 32.67 31.14 31.29 34.84 32.66 30.11 35.59 32.52 29.61 31.77 31.80 37.32 32.14 31.39 34.98 34.53 37.08 32.54 33.98 33.85 31.99 31.65 31.66 33.09 30.28 32.80 36.88 32.62 31.97 32.83 32.01 34.78 34.69 32.47 33.08 29.21 31.90 32.84 34.78 33.70 33.80 34.02 31.85 36.36 K alternative_acceptor CAP-D2 chr3R + chr3R_25501579_25501909;chr3R_25501579_25501655 chr3R_25501579_25501620 chr3R_25501398_25501578;chr3R_25501910_25501927 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 1.72 2.33 3.12 0.00 3.64 3.45 2.86 2.78 3.70 0.00 2.00 0.00 0.00 5.26 5.17 2.50 2.04 1.79 0.00 0.00 0.00 6.45 7.14 0.00 0.00 2.27 0.00 0.00 3.51 3.70 0.00 5.00 0.00 3.57 6.67 5.88 K alternative_acceptor dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21308939_21309945 chr2L_21309092_21309945 chr2L_21309946_21309974;chr2L_21308288_21308938 100.00 100.00 100.00 90.91 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 90.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA NA 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 NA K intron_retention I_chr3R_23771063_23772599,CG4951,RI_chr3R_23778808_23778861 chr3R - chr3R_23778647_23778714 chr3R_23778646_23778647;chr3R_23778714_23778715 chr3R_23778479_23778646;chr3R_23778715_23778798 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 2.56 0.00 0.00 0.00 0.00 0.00 3.06 0.00 0.00 4.04 0.89 7.55 5.36 10.53 4.65 7.69 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 7.50 0.98 0.00 0.00 0.00 0.00 0.00 0.00 1.89 5.10 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 K intron_retention SWAP,I_chrX_935995_936292,RI_chrX_938935_938985,I_chrX_941459_982652 chrX + chrX_935437_936292 chrX_935436_935437;chrX_936292_936293 chrX_935026_935436;chrX_936293_936392 37.14 43.24 48.28 52.08 34.62 28.95 63.64 40.43 36.99 46.67 27.59 31.03 42.86 48.00 40.91 32.26 57.14 32.00 46.67 32.86 23.81 25.00 40.43 29.27 43.33 0.00 42.86 35.71 40.74 32.65 28.33 27.27 31.75 38.78 32.35 12.82 40.74 50.00 42.11 35.09 33.33 43.55 47.06 57.14 33.33 37.14 34.21 38.30 47.54 41.38 28.85 48.15 43.33 23.08 39.39 31.03 36.67 36.36 K intron_retention G-ialpha65A,I_chr3L_6967574_6972726 chr3L - chr3L_6966634_6966689 chr3L_6966633_6966634;chr3L_6966689_6966690 chr3L_6965736_6966633;chr3L_6966690_6966878 0.23 0.25 0.00 0.30 0.00 0.30 0.28 0.28 0.48 0.00 0.00 0.14 0.00 0.58 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.15 0.30 0.23 0.00 1.10 2.51 0.54 0.00 0.70 0.00 0.00 0.42 0.31 0.00 0.00 0.00 0.16 0.42 0.00 0.25 0.00 0.47 0.00 0.60 0.39 0.46 0.81 0.32 0.80 0.24 0.00 0.49 0.00 0.00 0.57 0.00 K jcn_only_AD cryptocephal,noncoding_4181,I_chr2L_21311307_21311752,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21311307_21311752;chr2L_21311532_21311752;chr2L_21311215_21311752 chr2L_21311033_21311752 chr2L_21311753_21311852;chr2L_21310948_21311032 86.62 88.32 90.06 94.12 88.62 90.09 90.09 93.82 86.50 73.71 90.32 91.39 89.95 88.41 90.31 79.48 86.96 74.54 90.53 91.35 88.72 78.47 91.60 82.73 86.95 94.18 82.11 86.86 73.25 85.57 86.17 77.52 87.17 91.33 85.15 81.76 79.93 82.33 81.16 70.51 81.75 89.57 89.30 82.58 80.00 83.57 86.62 81.53 90.69 83.09 86.62 79.12 86.85 83.82 90.53 81.36 90.00 84.93 K intron_retention ade2 chr2L - chr2L_6045527_6045893 chr2L_6045526_6045527;chr2L_6045893_6045894 chr2L_6044428_6045526;chr2L_6045894_6046003 13.33 13.33 9.09 13.16 11.76 13.33 16.67 7.14 10.53 0.00 NA 8.57 0.00 NA 26.32 13.04 14.29 9.68 22.22 10.64 6.25 50.00 9.09 11.11 NA 11.76 NA NA 25.00 NA 16.00 NA 30.77 7.14 33.33 21.43 13.04 10.53 17.39 35.29 NA 14.29 NA NA NA 14.29 NA 26.09 15.91 17.65 22.22 NA NA NA 9.09 NA NA 21.43 K jcn_only_AA CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5043017_5043077;chr2L_5042891_5043077;chr2L_5042885_5043077 chr2L_5042888_5043077 chr2L_5043078_5043083 10.00 NA 0.00 9.38 NA NA 7.14 17.07 14.29 NA NA 14.58 23.53 9.38 11.11 7.27 4.55 NA 13.64 12.90 8.00 NA 18.52 4.55 NA NA NA NA NA NA 4.00 NA NA 7.32 NA NA NA NA NA NA NA 4.17 11.11 NA NA 12.00 17.39 NA 11.43 6.06 0.00 8.00 NA NA 13.89 10.00 11.43 NA K intron_retention CG5746 chr3R - chr3R_20173803_20173868 chr3R_20173802_20173803;chr3R_20173868_20173869 chr3R_20173386_20173802;chr3R_20173869_20174282 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.60 2.59 0.00 0.00 0.00 5.21 6.06 1.80 0.00 0.00 1.47 2.30 0.00 0.00 1.20 0.00 0.00 0.00 0.61 2.60 1.68 0.00 0.00 0.00 0.00 0.00 1.13 3.61 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 1.56 K jcn_only_AA Pms2,I_chr2R_11257708_11257764 chr2R - chr2R_11255877_11255990 chr2R_11255939_11255990 chr2R_11255991_11256244;chr2R_11255577_11255876 97.42 NA NA 96.00 NA NA 85.19 95.83 96.97 NA NA 86.67 NA NA NA 100.00 NA NA NA 98.53 NA NA 100.00 NA 100.00 NA 95.65 NA NA NA 95.65 100.00 96.15 100.00 NA NA 100.00 87.50 96.15 98.08 100.00 97.87 NA NA 100.00 93.10 91.30 90.62 94.87 91.67 100.00 NA NA 100.00 NA NA 100.00 100.00 N alternative_acceptor HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13164676_13165514;chrX_13164646_13165514 chrX_13164727_13165514 chrX_13165515_13165622;chrX_13164424_13164645 2.22 2.74 3.49 3.51 1.45 2.67 9.45 2.80 2.33 2.04 2.67 1.39 4.41 2.94 1.15 2.22 2.99 1.35 2.86 1.78 1.67 2.86 0.81 2.06 2.60 4.23 2.94 4.08 3.80 0.00 3.45 0.00 1.64 3.23 1.47 15.28 1.63 0.00 0.90 1.32 0.00 1.82 1.47 0.00 2.04 2.70 3.70 0.87 2.44 2.90 2.54 2.86 0.00 2.63 0.99 1.85 2.13 1.47 K alternative_donor CG2017 chr3R - chr3R_1686127_1686928 chr3R_1686127_1686711 chr3R_1685454_1686126;chr3R_1686929_1687019 100.00 NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA 100.00 NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA K intron_retention CG10069,I_chr2R_17171765_17171886 chr2R + chr2R_17171765_17171886 chr2R_17171764_17171765;chr2R_17171886_17171887 chr2R_17171740_17171764;chr2R_17171887_17171986 9.30 NA 10.53 0.00 NA NA 14.29 3.70 10.00 NA NA 15.00 NA NA 12.50 19.05 NA NA 15.79 9.09 NA 0.00 17.65 0.00 NA NA 7.14 NA 0.00 NA 9.52 NA 0.00 17.65 NA NA NA NA NA 3.85 0.00 19.05 NA NA 0.00 3.12 NA 8.33 10.53 NA 12.50 NA NA NA 12.50 NA NA 0.00 K alternative_donor I_chr2R_7165832_7165906,CG9067,CG9062,I_chr2R_7171366_7171418 chr2R - chr2R_7166631_7166695 chr2R_7166631_7166691 chr2R_7166551_7166630;chr2R_7166696_7166783 0.00 NA 0.00 0.00 NA 0.00 0.00 1.96 2.27 NA 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor SNF4Agamma,I_chr3R_16982134_16982890 chr3R + chr3R_16982134_16983336;chr3R_16982134_16982890;chr3R_16982134_16983164;chr3R_16982134_16983218 chr3R_16982134_16983159 chr3R_16982126_16982133;chr3R_16983337_16983376 45.83 35.29 31.58 48.00 50.00 33.33 47.22 47.50 54.35 22.22 50.00 52.63 50.00 45.83 52.63 53.12 56.25 42.86 53.57 53.57 30.77 33.33 52.63 35.71 33.33 50.00 58.33 42.86 50.00 36.36 61.54 57.14 31.25 53.85 50.00 61.54 55.56 37.50 50.00 27.27 36.36 45.00 42.86 35.71 16.67 43.75 37.50 30.43 44.68 37.50 52.94 30.77 33.33 20.00 53.57 22.22 50.00 57.14 K alternative_donor CG10550 chr3R - chr3R_21133632_21134032;chr3R_21133632_21133902 chr3R_21133632_21134036 chr3R_21133411_21133631;chr3R_21134037_21134116 8.33 NA NA 8.33 NA NA 10.00 0.00 12.50 NA NA NA NA NA NA NA NA NA NA 11.11 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA K intron_retention Moe,I_chrX_8774434_8791759 chrX - chrX_8785657_8785766 chrX_8785656_8785657;chrX_8785766_8785767 chrX_8785595_8785656;chrX_8785767_8785791 98.46 98.43 98.96 99.46 98.36 98.71 99.17 98.97 98.00 98.95 98.92 99.21 99.67 98.89 98.88 96.93 98.54 97.96 98.89 98.32 99.42 88.62 97.44 98.62 99.02 99.09 99.87 98.43 99.30 98.27 99.03 98.41 96.57 98.73 98.43 100.00 98.10 98.22 98.12 98.55 99.37 97.70 98.29 99.02 97.36 98.45 97.81 99.53 98.12 97.42 99.07 98.20 98.15 98.46 98.43 98.63 97.85 98.35 K cassette Baldspot,I_chr3L_16644636_16654570,I_chr3L_16652567_16652897,I_chr3L_16652567_16654296,RI_chr3L_16652567_16654506,RI_chr3L_16652567_16654512 chr3L - chr3L_16644636_16654570 chr3L_16644636_16652329;chr3L_16652567_16654570 chr3L_16652330_16652566 chr3L_16644536_16644635;chr3L_16654571_16654606 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.86 100.00 100.00 99.85 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.87 100.00 98.10 100.00 100.00 100.00 100.00 100.00 99.33 99.59 100.00 100.00 100.00 100.00 100.00 100.00 99.54 99.71 99.68 99.71 99.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.80 100.00 100.00 100.00 100.00 100.00 99.37 100.00 100.00 100.00 100.00 K intron_retention coro,I_chr2R_2754447_2755071 chr2R - chr2R_2752555_2752612 chr2R_2752554_2752555;chr2R_2752612_2752613 chr2R_2752141_2752554;chr2R_2752613_2752879 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG2225,Ef2b,snmRNA:254 chr2L - chr2L_21680181_21680756 chr2L_21680180_21680181;chr2L_21680756_21680757 chr2L_21679484_21680180;chr2L_21680757_21681284 0.03 0.00 0.11 0.09 0.00 0.00 0.04 0.07 0.06 0.14 0.00 0.10 0.07 0.00 0.00 0.04 0.00 0.00 0.09 0.03 0.00 0.05 0.00 0.06 0.05 0.04 0.14 0.21 0.18 0.00 0.00 0.00 0.04 0.00 0.00 0.09 0.06 0.00 0.00 0.06 0.10 0.07 0.00 0.03 0.00 0.00 0.00 0.10 0.07 0.05 0.03 0.00 0.00 0.00 0.00 0.00 0.03 0.08 K intron_retention Abl,I_chr3L_16622304_16639909,RI_chr3L_16652567_16654512 chr3L - chr3L_16618375_16619627 chr3L_16618374_16618375;chr3L_16619627_16619628 chr3L_16616737_16618374;chr3L_16619628_16619716 11.11 10.13 6.94 35.62 3.33 7.84 22.37 11.39 10.97 8.89 12.00 17.20 24.39 8.57 5.41 15.38 6.25 4.76 17.65 8.98 9.72 15.65 12.73 12.86 23.94 17.65 21.33 12.20 17.35 10.81 16.22 14.29 11.11 7.96 6.25 31.75 7.14 7.79 8.57 9.70 25.76 13.29 11.54 13.70 7.06 12.50 6.00 16.22 9.60 16.67 13.10 7.55 7.55 10.64 7.06 10.71 12.96 10.81 K alternative_acceptor CG4616 chr2R + chr2R_9094497_9094571 chr2R_9094497_9094566 chr2R_9094354_9094496;chr2R_9094572_9094854 88.89 NA NA 88.89 NA NA NA 88.89 100.00 NA NA 88.89 NA NA 87.50 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA 77.78 K intron_retention CG2976 chr2L - chr2L_4830401_4830468 chr2L_4830400_4830401;chr2L_4830468_4830469 chr2L_4830040_4830400;chr2L_4830469_4830778 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 1.01 0.00 7.95 1.22 1.52 0.00 0.00 4.31 2.44 8.57 0.81 1.00 0.00 0.00 0.00 3.57 0.00 0.00 1.83 0.73 0.61 0.00 0.89 0.00 1.25 1.22 1.78 0.00 0.00 0.00 2.91 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 N jcn_only_AA CG5535 chr3L - chr3L_17847808_17849745 chr3L_17849637_17849745 chr3L_17849746_17849932;chr3L_17847440_17847807 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Pp2A-29B,I_chr2L_8367210_8367311,I_chr2L_8369561_8369715 chr2L + chr2L_8367210_8367311 chr2L_8367250_8367311 chr2L_8367312_8367379;chr2L_8367110_8367209 99.74 100.00 100.00 99.69 99.42 100.00 100.00 99.68 100.00 99.12 100.00 100.00 99.45 100.00 99.60 100.00 100.00 100.00 99.51 99.79 100.00 100.00 99.73 100.00 99.55 100.00 99.61 100.00 99.33 100.00 99.55 100.00 99.30 99.67 100.00 99.42 99.65 98.47 99.69 100.00 100.00 99.74 100.00 98.60 100.00 99.38 100.00 99.08 99.73 99.47 99.65 99.39 98.90 99.33 100.00 100.00 99.39 100.00 K intron_retention tomosyn,I_chrX_12531219_12531470,I_chrX_12534873_12541731,noncoding_23357,I_chrX_12548772_12549203 chrX + chrX_12542817_12545142 chrX_12542816_12542817;chrX_12545142_12545143 chrX_12542700_12542816;chrX_12545143_12545259 76.92 70.00 88.89 68.00 NA NA 100.00 NA 89.47 NA NA NA NA NA 77.78 80.00 NA 90.00 80.00 76.92 NA 81.82 76.92 69.23 NA NA NA NA NA NA 73.33 NA 70.00 92.86 NA NA 56.25 NA 46.15 68.18 NA 61.11 NA 71.43 NA NA NA 90.00 88.24 NA 64.29 NA NA NA 80.00 NA 60.00 72.73 K jcn_only_AD CG2310,I_chr3R_25318474_25319142 chr3R - chr3R_25318474_25319136;chr3R_25318474_25319163;chr3R_25318474_25319142;chr3R_25318474_25318925;chr3R_25318474_25319093;chr3R_25318474_25318971;chr3R_25318474_25319004 chr3R_25318474_25319167 chr3R_25318374_25318473;chr3R_25319168_25319224 69.95 75.81 61.96 60.49 75.39 64.02 57.14 76.43 72.22 70.41 58.62 63.43 70.07 63.11 65.54 61.37 69.95 70.56 67.40 63.15 58.19 73.81 72.25 77.80 72.41 66.11 70.62 64.49 54.77 76.17 56.62 63.83 36.89 70.37 66.30 66.06 78.95 73.20 71.60 66.90 30.77 71.80 68.18 73.54 56.23 61.70 71.39 41.12 72.69 73.10 73.26 72.45 73.29 70.38 65.29 77.08 76.26 54.49 K intron_retention Actn,I_chrX_1929229_1936079,I_chrX_1935678_1936079,I_chrX_1935889_1936079 chrX - chrX_1935889_1936079 chrX_1935888_1935889;chrX_1936079_1936080 chrX_1935789_1935888;chrX_1936080_1936110 87.50 NA NA NA NA NA 100.00 NA 69.23 NA NA 100.00 NA NA NA 87.50 NA 40.00 NA 63.64 NA NA 88.89 NA NA NA NA NA NA NA 100.00 NA NA 90.00 NA NA NA NA NA 53.85 NA 90.00 NA NA NA NA NA 77.78 84.62 NA 87.50 NA NA NA 88.89 NA NA NA K intron_retention betaTub60D chr2R + chr2R_20198354_20198418 chr2R_20198353_20198354;chr2R_20198418_20198419 chr2R_20198245_20198353;chr2R_20198419_20198660 4.51 0.00 0.00 5.19 3.23 0.00 2.00 5.37 2.71 3.75 0.00 4.69 0.00 1.87 3.35 3.41 4.83 0.00 1.52 4.51 0.00 5.50 6.08 5.45 5.77 3.97 5.94 5.13 5.98 0.00 0.00 5.70 7.22 5.16 5.73 4.76 3.94 2.50 4.20 2.71 5.92 4.86 3.23 3.41 6.25 6.15 5.90 5.18 4.46 4.07 5.66 4.79 0.00 4.71 3.98 5.85 6.04 7.43 K intron_retention CG6695 chr3R + chr3R_20483336_20484042 chr3R_20483335_20483336;chr3R_20484042_20484043 chr3R_20483238_20483335;chr3R_20484043_20484133 52.63 41.67 NA NA NA NA NA 60.00 62.50 NA NA 61.54 NA NA 87.50 88.89 NA NA NA 78.57 NA 41.67 55.56 41.18 NA NA 41.67 71.43 NA NA 60.00 NA 50.00 NA NA 77.78 45.45 NA 45.00 52.63 46.67 65.00 NA 42.11 33.33 50.00 NA 55.00 73.33 46.15 50.00 54.55 60.00 30.77 NA 41.67 45.45 56.25 K intron_retention Gs2 chrX + chrX_11323207_11323271 chrX_11323206_11323207;chrX_11323271_11323272 chrX_11323015_11323206;chrX_11323272_11324204 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.35 0.00 0.00 2.56 0.00 0.00 2.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Rpn9 chr3R - chr3R_19557704_19557764 chr3R_19557703_19557704;chr3R_19557764_19557765 chr3R_19557225_19557703;chr3R_19557765_19558295 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1673 chrX + chrX_13293973_13294039 chrX_13293972_13293973;chrX_13294039_13294040 chrX_13293666_13293972;chrX_13294040_13294194 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.72 0.00 0.00 0.43 0.00 0.52 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 1.07 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.42 0.00 0.00 0.31 0.58 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Akt1 chr3R + chr3R_11926502_11926621;chr3R_11924988_11926621;chr3R_11925318_11926621;chr3R_11925014_11926621 chr3R_11925383_11926621 chr3R_11926622_11926719;chr3R_11924974_11924987 35.00 NA NA 35.00 NA NA 40.00 23.68 17.86 NA NA 25.93 NA NA NA 60.00 NA NA NA 46.15 NA 17.50 44.83 52.17 NA NA 50.00 NA 19.05 NA NA NA 17.65 29.17 NA NA 19.23 NA NA 33.33 NA 37.50 NA NA NA NA NA NA 40.00 NA 74.19 NA NA NA NA NA NA NA K intron_retention LIMK1,CG1824,I_chrX_12488942_12489000 chrX - chrX_12487646_12487908 chrX_12487645_12487646;chrX_12487908_12487909 chrX_12487040_12487645;chrX_12487909_12488925 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 2.22 0.00 10.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 3.45 2.08 0.00 3.12 4.76 0.00 3.70 1.85 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 6.25 0.00 K jcn_only_AA Tango5,noncoding_22970,I_chrX_10659836_10661185 chrX - chrX_10656236_10658202 chrX_10656468_10658202 chrX_10658203_10658269;chrX_10655948_10656235 96.34 87.76 98.85 93.07 90.79 97.22 89.01 93.64 97.84 93.75 94.57 96.34 98.21 97.18 96.06 100.00 100.00 94.67 94.68 94.57 91.46 97.14 96.70 96.97 100.00 96.20 100.00 97.78 95.65 94.83 100.00 96.88 98.53 97.46 98.04 97.56 97.86 100.00 92.31 92.59 96.97 95.32 95.08 97.01 93.55 92.31 100.00 93.33 95.68 90.91 95.38 98.41 100.00 96.00 95.28 97.78 91.30 100.00 K intron_retention sd,noncoding_23930,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15707640_15707881 chrX_15707639_15707640;chrX_15707881_15707882 chrX_15707634_15707639;chrX_15707882_15708324 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 94.12 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 K alternative_donor CG13510,F_chr2R_18548367_18550224,R_chr2R_18548408_18548573,I_chr2R_18551419_18551493 chr2R + chr2R_18548367_18548573 chr2R_18548408_18548573 chr2R_18548574_18548673;chr2R_18548308_18548366 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Treh,I_chr2R_16972565_16972702,I_chr2R_16975359_16975442,RI_chr2R_16975359_16975842,I_chr2R_16975364_16975842 chr2R + chr2R_16975359_16975442 chr2R_16975364_16975442 chr2R_16975443_16975450;chr2R_16975286_16975358 100.00 100.00 100.00 98.86 100.00 100.00 99.04 100.00 100.00 98.78 100.00 98.60 100.00 100.00 100.00 98.96 100.00 98.75 100.00 100.00 98.77 100.00 100.00 100.00 97.01 98.70 100.00 100.00 100.00 98.67 100.00 100.00 98.90 99.25 100.00 97.47 100.00 97.56 100.00 99.44 100.00 100.00 100.00 100.00 100.00 100.00 98.85 100.00 100.00 98.94 99.22 100.00 100.00 100.00 100.00 100.00 99.08 100.00 K intron_retention Gos28,CG31231 chr3R + chr3R_14490720_14490789 chr3R_14490719_14490720;chr3R_14490789_14490790 chr3R_14490331_14490719;chr3R_14490790_14491037 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_261460_263086 chr4_261459_261460;chr4_263086_263087 chr4_261360_261459;chr4_263087_263108 25.00 NA 28.57 NA NA 7.14 44.00 24.32 16.33 NA NA 29.63 30.77 27.27 NA 38.24 NA NA 10.53 12.50 NA NA NA NA NA NA NA NA NA NA 18.75 NA NA 25.00 NA NA NA NA NA 26.32 NA 16.67 33.33 NA NA NA NA NA 18.52 NA 25.00 NA NA NA 14.29 NA NA NA K jcn_only_AA Ddip2,I_chr3L_252498_252538,I_chr3L_252776_253313 chr3L - chr3L_252464_252538 chr3L_252482_252538 chr3L_252539_252638;chr3L_252398_252463 100.00 97.87 100.00 98.88 100.00 97.73 100.00 99.00 98.68 94.44 96.97 98.53 100.00 97.78 100.00 98.39 100.00 97.62 98.55 98.84 100.00 100.00 97.96 100.00 NA 100.00 100.00 95.65 97.56 96.55 98.84 97.96 100.00 97.85 100.00 100.00 100.00 95.24 100.00 99.02 100.00 97.67 100.00 96.61 100.00 100.00 96.15 100.00 98.72 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 K intron_retention CG33558,I_chr2R_2816779_2817354,I_chr2R_2820149_2820628,EI_chr2R_2820947_2821570,CREI_chr2R_2832933_2850384 chr2R - chr2R_2820203_2820628 chr2R_2820202_2820203;chr2R_2820628_2820629 chr2R_2819348_2820202;chr2R_2820629_2820728 6.67 9.52 11.11 5.26 10.53 NA NA 19.35 14.63 NA NA 5.71 NA 0.00 9.09 14.29 8.00 10.53 9.09 8.89 6.67 6.67 7.69 5.26 5.26 0.00 5.56 NA 0.00 8.33 6.90 7.41 0.00 17.65 0.00 0.00 5.71 0.00 0.00 10.17 6.67 15.38 8.33 6.90 0.00 2.13 0.00 6.56 10.53 3.70 20.00 NA 0.00 3.45 14.29 0.00 0.00 0.00 K intron_retention I_chr2R_11822418_11822485,CG8297 chr2R + chr2R_11822429_11822485 chr2R_11822428_11822429;chr2R_11822485_11822486 chr2R_11822349_11822428;chr2R_11822486_11822585 0.00 0.00 0.00 1.14 0.00 1.75 4.00 0.98 0.79 0.00 0.00 2.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 4.55 5.56 0.00 NA 9.23 10.00 NA 20.00 NA 3.03 NA NA 1.30 NA NA 6.06 NA NA 0.00 NA 0.00 0.00 6.67 4.35 NA NA NA 1.54 0.00 0.00 0.00 11.11 NA 2.53 0.00 0.00 NA K alternative_donor Rab5,I_chr2L_2361586_2364444,RI_chr2L_2361586_2364627,I_chr2L_2361586_2364794 chr2L - chr2L_2361586_2364640;chr2L_2361586_2364480;chr2L_2361586_2364836;chr2L_2361586_2365060;chr2L_2361586_2364302;chr2L_2361586_2364594;chr2L_2361586_2364312 chr2L_2361586_2364889 chr2L_2361486_2361585;chr2L_2365061_2365065 54.93 55.56 56.41 57.75 65.71 51.52 58.73 56.25 55.36 61.11 66.67 54.93 58.82 60.53 60.98 61.29 61.11 59.38 61.70 53.64 67.57 42.86 51.28 46.88 57.69 60.00 47.83 31.25 33.33 28.57 48.89 36.00 26.53 56.58 34.62 20.83 64.10 61.90 63.16 34.29 25.00 54.32 57.14 37.04 36.11 30.43 50.00 29.41 53.09 68.00 44.44 55.17 33.33 50.00 59.09 48.15 56.41 27.78 K intron_retention CG18445,I_chr2R_5927355_5927472 chr2R - chr2R_5926018_5926085 chr2R_5926017_5926018;chr2R_5926085_5926086 chr2R_5925685_5926017;chr2R_5926086_5926433 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.24 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive CG11155,I_chr4_1151213_1151903,I_chr4_1152220_1152710,I_chr4_1152585_1152687 chr4 + chr4_1152220_1152710,chr4_1153200_1154500 chr4_1152220_1152326,chr4_1152585_1154500 chr4_1152711_1153199 chr4_1152327_1152584 chr4_1152120_1152219;chr4_1154501_1154522 85.71 83.33 87.50 92.31 75.00 88.89 90.91 94.44 92.31 75.00 NA 93.75 87.50 90.91 83.33 92.31 100.00 87.50 83.33 90.91 100.00 NA 75.00 85.71 80.00 83.33 75.00 75.00 75.00 75.00 91.67 NA NA 93.33 85.71 75.00 NA 80.00 75.00 83.33 NA 80.00 100.00 87.50 NA 66.67 100.00 80.00 90.00 85.71 88.89 85.71 NA NA 85.71 NA 85.71 66.67 K intron_retention scrib,I_chr3R_22362324_22363015,I_chr3R_22381374_22399575,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22362254_22363092 chr3R_22362253_22362254;chr3R_22363092_22363093 chr3R_22362235_22362253;chr3R_22363093_22363115 17.65 20.00 20.51 13.41 22.22 14.81 18.87 12.99 19.28 NA 23.33 16.67 24.14 17.50 13.64 20.83 6.45 12.50 24.44 10.42 21.88 11.22 34.00 16.67 36.84 20.51 30.56 21.43 14.00 9.89 12.20 11.11 10.06 16.13 10.94 27.12 33.33 12.50 37.84 20.97 18.75 15.79 15.79 17.65 35.48 12.20 30.00 15.22 14.93 11.76 20.37 17.65 26.32 NA 14.81 17.65 22.22 20.29 K alternative_donor mav,RI_chr4_645290_646129 chr4 - chr4_645568_646129 chr4_645568_645616 chr4_645398_645567;chr4_646130_646229 100.00 94.74 95.45 100.00 91.67 100.00 97.78 97.83 98.21 100.00 100.00 97.37 100.00 96.43 95.45 98.21 95.45 100.00 97.30 97.37 83.33 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 88.89 97.44 95.83 100.00 100.00 95.24 100.00 93.75 98.00 100.00 95.65 100.00 100.00 100.00 100.00 92.31 92.31 100.00 K jcn_only_AA CG7091,RI_chr3R_8805541_8805680,I_chr3R_8809774_8809832 chr3R + chr3R_8804833_8804890 chr3R_8804833_8804873 chr3R_8804612_8804832;chr3R_8804891_8805199 3.45 5.77 1.47 2.53 2.08 10.81 3.17 1.59 0.91 NA 3.70 3.45 0.00 0.00 0.00 0.00 0.00 0.00 4.00 3.57 6.25 2.33 5.00 5.26 NA 0.00 6.45 4.17 NA 3.45 5.71 4.35 NA 4.84 4.00 NA 3.39 6.45 5.88 7.14 NA 2.08 0.00 NA NA 0.00 0.00 11.54 4.17 3.12 6.25 3.70 12.50 NA 2.82 8.11 0.00 0.00 K alternative_donor dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21309092_21310000;chr2L_21309092_21309945;chr2L_21309092_21309994;chr2L_21309092_21309938 chr2L_21309092_21309579 chr2L_21308992_21309091;chr2L_21310001_21310009 66.67 NA 63.16 73.08 56.25 NA 65.38 58.33 65.31 77.78 56.52 61.54 75.00 66.67 56.52 78.26 NA NA 65.00 63.79 64.71 69.57 86.96 76.19 NA 50.00 75.00 80.00 75.00 NA 66.67 72.73 75.56 65.38 78.57 83.33 NA 66.67 66.67 64.29 NA 63.16 NA 79.17 58.33 70.59 NA 74.36 66.67 NA NA 64.71 NA NA 66.67 NA NA NA K intron_retention PP2A-B' chr3R + chr3R_14001957_14002028 chr3R_14001956_14001957;chr3R_14002028_14002029 chr3R_14001726_14001956;chr3R_14002029_14002421 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_donor I_chrX_4000307_4003527,CG4857 chrX + chrX_4011929_4011996;chrX_4011315_4011996;chrX_4011270_4011996 chrX_4011429_4011996 chrX_4011997_4012308;chrX_4011093_4011269 0.00 0.00 0.00 25.00 0.00 0.00 24.14 0.00 20.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 24.00 4.17 0.00 0.00 0.00 23.68 0.00 0.00 0.00 0.00 0.00 0.00 14.29 8.00 0.00 29.03 0.00 0.00 0.00 0.00 0.00 10.34 16.28 0.00 19.57 28.57 0.00 0.00 0.00 0.00 25.00 23.91 0.00 16.13 0.00 0.00 0.00 28.57 0.00 23.08 0.00 K jcn_only_AD Atg2 chr3L + chr3L_2774487_2774567 chr3L_2774494_2774567 chr3L_2774568_2780718;chr3L_2774319_2774486 33.33 48.00 NA 34.38 NA NA 26.32 42.31 39.47 NA NA 36.17 28.00 NA 50.00 18.92 NA NA 45.00 25.00 NA 38.30 28.21 45.00 NA NA NA NA NA 40.91 30.56 NA 28.57 44.83 41.67 33.33 30.43 25.00 NA 33.33 NA 41.94 NA 36.36 NA NA NA 26.67 30.00 NA 26.67 30.00 29.17 NA 39.39 33.33 NA NA K intron_retention scarface,RI_chr2R_1568023_1569369,I_chr2R_1568023_1571968,I_chr2R_1568023_1575180 chr2R - chr2R_1568023_1572308 chr2R_1568022_1568023;chr2R_1572308_1572309 chr2R_1567923_1568022;chr2R_1572309_1572482 0.00 2.11 0.00 1.21 0.00 0.00 2.78 0.00 1.28 0.00 0.00 0.00 0.00 0.00 1.22 1.79 0.00 2.70 0.00 1.39 0.00 3.68 0.00 2.94 5.08 0.00 3.30 4.44 0.00 0.00 0.93 0.00 1.18 0.00 2.38 1.09 0.00 2.27 0.00 1.43 3.77 0.72 0.00 0.00 0.00 2.02 0.00 1.89 0.00 9.09 0.94 3.28 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Tpr2 chr2L + chr2L_16492052_16505495 chr2L_16492052_16497010 chr2L_16491573_16492051 0.25 0.33 0.29 0.67 0.00 0.00 1.02 0.46 0.32 0.00 0.00 0.22 0.44 0.41 0.32 0.00 0.42 0.00 0.31 0.15 0.00 1.80 0.20 0.29 0.50 0.00 0.30 0.00 0.35 0.36 0.38 0.57 0.23 0.47 1.13 1.61 0.00 0.61 0.25 0.51 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.43 0.00 0.59 0.60 0.00 0.00 0.00 K intron_retention CG12703 chrX + chrX_19650836_19650903 chrX_19650835_19650836;chrX_19650903_19650904 chrX_19650645_19650835;chrX_19650904_19651001 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.93 2.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor eIF-2beta,RI_chr3L_12519486_12519541 chr3L - chr3L_12519486_12519688;chr3L_12519486_12519541;chr3L_12519486_12519590 chr3L_12519486_12519596 chr3L_12519386_12519485;chr3L_12519689_12519829 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1513,I_chr2R_5778649_5778739 chr2R - chr2R_5772807_5772865 chr2R_5772806_5772807;chr2R_5772865_5772866 chr2R_5772705_5772806;chr2R_5772866_5773017 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 7.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Csk,I_chr3R_7463337_7463512,I_chr3R_7468917_7472437,I_chr3R_7468917_7472509,I_chr3R_7468928_7472509 chr3R - chr3R_7468928_7472437 chr3R_7468927_7468928;chr3R_7472437_7472438 chr3R_7468892_7468927;chr3R_7472438_7472537 69.23 75.00 80.00 61.11 NA 70.00 80.00 69.23 68.97 NA NA 58.82 66.67 78.57 50.00 83.33 75.00 NA 50.00 77.78 NA NA 53.85 NA NA NA 61.54 NA NA NA 66.67 NA NA 61.90 NA NA NA NA NA NA NA 56.25 NA 80.00 NA NA NA NA 77.78 NA 75.00 72.73 NA NA 61.54 NA NA NA K cassette Mbs,I_chr3L_16045251_16046108,I_chr3L_16057100_16057329 chr3L + chr3L_16070383_16073858;chr3L_16070383_16071919 chr3L_16070383_16070822;chr3L_16070910_16071919,chr3L_16070910_16073858 chr3L_16070823_16070909 chr3L_16070292_16070382;chr3L_16073859_16074854 0.98 1.43 0.87 0.49 0.00 1.00 0.69 1.49 1.00 0.00 1.14 0.53 0.79 0.88 0.83 0.56 0.00 0.00 0.78 1.58 1.19 1.02 1.03 2.35 0.00 0.83 1.03 0.00 1.89 0.00 0.88 0.00 1.06 0.53 2.60 1.20 1.05 0.00 1.12 1.52 0.00 0.90 1.09 1.41 0.00 1.37 1.72 1.00 0.95 1.45 1.30 1.27 0.00 0.00 1.52 1.27 0.00 0.98 K jcn_only_AA Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8089737_8102299;chr2L_8089737_8105691 chr2L_8089737_8105696 chr2L_8089558_8089736 0.19 0.21 0.35 0.18 1.38 0.00 0.18 0.23 0.14 0.00 0.00 0.09 0.00 0.00 0.16 0.09 0.14 0.38 0.00 0.36 0.21 0.19 0.43 0.41 0.29 0.17 0.33 0.00 0.00 0.41 0.00 0.47 0.00 0.16 0.24 0.23 0.79 0.74 0.55 0.44 0.35 0.00 0.17 0.00 0.51 0.23 0.00 0.25 0.00 0.00 0.34 0.00 0.00 0.45 0.34 0.33 0.53 0.00 K alternative_acceptor kel,I_chr2L_18134827_18137476,I_chr2L_18135502_18135573 chr2L - chr2L_18134827_18135573 chr2L_18135502_18135573 chr2L_18135574_18135673;chr2L_18134727_18134826 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention Gs1l,I_chr2L_4456517_4456723 chr2L - chr2L_4455739_4456113 chr2L_4455738_4455739;chr2L_4456113_4456114 chr2L_4455221_4455738;chr2L_4456114_4456332 20.37 18.89 42.11 52.94 15.69 28.89 15.94 25.81 17.24 14.55 9.52 16.39 8.00 18.92 17.81 76.47 18.75 20.00 25.00 20.66 20.93 47.73 21.98 24.36 12.90 28.57 29.09 27.08 14.47 27.66 45.21 18.03 25.81 18.75 17.39 32.61 18.58 14.44 25.00 17.82 15.07 18.55 23.08 14.46 17.12 15.79 27.78 20.69 22.35 27.12 21.74 22.00 18.37 15.29 15.52 22.37 23.21 20.37 K alternative_donor I_chr3L_3151185_3151263,CG32280 chr3L + chr3L_3165222_3167941;chr3L_3165255_3167941;chr3L_3165352_3167941;chr3L_3165704_3167941;chr3L_3165407_3167941 chr3L_3165390_3167941 chr3L_3167942_3168265;chr3L_3165212_3165221 0.00 NA NA 0.00 NA NA 33.33 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 NA NA NA 16.67 0.00 NA NA NA NA NA 25.00 NA NA NA 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA NA NA 0.00 0.00 K jcn_only_AA B4,I_chr2L_13513474_13549131,I_chr2L_13547133_13549131,I_chr2L_13547162_13547692,I_chr2L_13547304_13549131 chr2L - chr2L_13547304_13549131;chr2L_13547162_13549131 chr2L_13547133_13549131 chr2L_13549132_13549231;chr2L_13547062_13547132 2.78 3.23 13.33 2.44 4.35 4.17 3.03 0.00 2.27 0.00 NA 5.00 NA NA 7.41 0.00 4.00 NA 3.12 3.77 4.17 0.00 1.79 5.45 0.00 4.00 2.56 2.50 5.41 3.77 2.78 NA 4.29 5.56 0.00 0.00 2.70 2.86 1.92 0.00 4.65 0.00 0.00 0.00 2.27 1.64 10.53 2.08 0.00 2.86 0.00 0.00 NA 3.23 4.88 8.33 3.12 0.00 K intron_retention CG6678 chr3R + chr3R_17713314_17713756 chr3R_17713313_17713314;chr3R_17713756_17713757 chr3R_17712862_17713313;chr3R_17713757_17714276 14.29 NA NA NA NA NA NA NA 41.67 NA NA NA NA NA 13.33 NA NA NA NA NA NA NA 15.38 NA NA NA NA NA 11.11 NA NA NA 7.69 NA NA 13.33 NA NA 14.29 25.00 20.00 NA NA NA NA 26.67 NA 12.00 14.29 NA NA NA NA NA NA NA NA 0.00 K intron_retention didum,I_chr2R_3393005_3393348 chr2R + chr2R_3390701_3391153 chr2R_3390700_3390701;chr2R_3391153_3391154 chr2R_3390677_3390700;chr2R_3391154_3391267 3.23 NA NA NA NA NA NA 20.00 13.79 NA NA 19.05 NA NA NA 0.00 NA NA 0.00 6.45 NA NA 0.00 20.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA 0.00 NA NA 18.18 NA NA NA NA NA NA 9.38 NA NA NA NA NA 0.00 NA NA NA K jcn_only_AD E_chr4_592469_594231,Ephrin,I_chr4_595055_597604,RI_chr4_596272_596341 chr4 + chr4_592646_594238;chr4_592490_594238;chr4_592593_594238;chr4_592469_594238;chr4_592410_594238;chr4_592798_594238 chr4_592737_594238 chr4_594239_594331;chr4_592404_592409 8.70 14.81 8.70 8.33 12.00 3.57 13.68 10.00 5.81 NA NA 11.39 0.00 0.00 5.88 3.49 3.12 NA 4.26 9.68 24.14 NA 3.70 NA 8.70 18.75 18.18 NA NA NA 9.68 NA NA 2.53 4.17 14.29 NA NA NA 6.67 NA 6.45 8.82 10.71 NA NA NA NA 7.23 NA 8.11 9.09 NA NA 9.09 NA NA NA K intron_retention sqh,I_chrX_6118150_6118800 chrX - chrX_6117545_6117617 chrX_6117544_6117545;chrX_6117617_6117618 chrX_6117090_6117544;chrX_6117618_6118149 0.08 0.13 0.00 0.55 0.00 0.14 0.37 0.23 0.08 0.00 0.17 0.08 0.00 0.37 0.39 0.00 0.46 0.32 0.19 0.06 0.00 0.00 0.00 0.00 0.14 0.32 0.46 1.22 0.17 0.00 0.00 0.00 0.00 0.21 0.28 0.00 0.21 0.00 0.00 0.31 0.36 0.22 0.00 0.00 0.12 0.07 0.00 0.00 0.42 0.19 0.00 0.00 0.00 0.00 0.00 0.24 0.17 0.00 K jcn_only_AA E(bx),I_chr3L_240127_240176,I_chr3L_246324_246699 chr3L - chr3L_240114_240176;chr3L_240111_240176;chr3L_240117_240176 chr3L_240127_240176 chr3L_240177_240276;chr3L_240027_240110 2.82 2.94 1.98 1.10 8.47 1.89 3.36 0.73 2.00 0.00 4.17 1.23 4.11 5.97 0.00 7.00 0.00 2.20 2.35 0.45 1.39 4.76 1.05 3.95 7.69 4.76 1.96 6.25 3.00 1.39 6.25 5.45 2.68 1.57 4.62 2.04 1.01 7.69 1.05 3.54 4.92 3.62 3.33 2.33 5.95 1.67 1.43 3.24 2.82 4.08 0.00 1.96 1.72 5.08 5.21 0.00 5.77 3.70 K alternative_acceptor RhoGAP5A,C_chrX_5514320_5515557 chrX - chrX_5511062_5511153 chrX_5511090_5511153 chrX_5511154_5511259;chrX_5510684_5511061 100.00 96.55 100.00 100.00 100.00 95.00 100.00 100.00 97.14 100.00 100.00 100.00 90.91 100.00 100.00 94.12 100.00 100.00 100.00 98.08 100.00 97.22 97.78 98.15 96.67 100.00 97.50 96.30 96.67 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.08 100.00 100.00 100.00 96.43 98.53 98.25 95.00 100.00 100.00 100.00 97.37 100.00 100.00 97.73 95.24 97.78 97.96 97.87 K alternative_acceptor Graf,RI_chrX_15652351_15654288,RI_chrX_15652363_15654157,RI_chrX_15652363_15654499,RI_chrX_15654228_15654288 chrX - chrX_15652351_15654272 chrX_15652363_15654272 chrX_15654273_15654284;chrX_15652263_15652350 25.39 NA NA NA NA NA 7.14 18.75 22.22 NA NA NA NA NA NA 40.00 NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA 21.43 NA NA NA NA NA NA NA 44.44 NA NA NA NA NA NA 28.57 NA NA NA NA NA NA NA NA NA K intron_retention exo84 chr3R - chr3R_21876423_21876481 chr3R_21876422_21876423;chr3R_21876481_21876482 chr3R_21875893_21876422;chr3R_21876482_21877254 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CtBP chr3R + chr3R_8843123_8845063 chr3R_8843122_8843123;chr3R_8845063_8845064 chr3R_8842883_8843122;chr3R_8845064_8845536 92.00 NA 81.82 92.00 NA 100.00 96.97 91.67 95.24 NA NA 95.65 93.75 95.83 100.00 90.91 90.91 91.67 94.74 94.12 NA 88.89 NA NA NA 86.67 NA NA 88.89 NA 92.31 NA NA 82.61 NA 100.00 NA NA NA 100.00 NA 83.33 91.67 NA NA NA NA NA 86.67 NA NA NA NA NA 93.75 NA NA 77.78 K alternative_acceptor ena chr2R + chr2R_15046858_15047299 chr2R_15046858_15047287 chr2R_15046625_15046857;chr2R_15047300_15047324 12.50 17.58 11.11 17.58 14.58 14.58 13.21 12.98 13.03 13.54 9.43 10.17 12.31 11.11 13.11 12.50 17.50 17.50 15.19 11.85 8.54 17.42 10.43 12.39 15.87 15.79 11.11 12.77 14.02 11.54 12.24 11.97 9.07 9.22 14.17 24.46 14.71 22.58 12.75 11.70 11.11 12.50 14.93 16.83 9.21 12.33 10.11 11.86 12.67 11.43 8.24 19.61 9.63 10.42 13.98 20.00 10.71 10.30 K jcn_only_AD CaMKI,I_chr4_466377_467256,I_chr4_466377_467726,I_chr4_467072_467446,I_chr4_467378_467424,RI_chr4_467374_467424,RI_chr4_467482_467543,I_chr4_467862_471815,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_466275_467726;chr4_466377_467726;chr4_467662_467726;chr4_466798_467726;chr4_467273_467726 chr4_466592_467726 chr4_467727_467826;chr4_466269_466274 0.00 0.00 NA 3.23 NA 5.00 0.00 0.00 1.47 NA NA 5.41 0.00 0.00 NA 0.00 0.00 NA 0.00 3.12 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 3.03 0.00 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention I_chrX_1798310_1798525,eIF2B-epsilon chrX - chrX_1816503_1816575 chrX_1816502_1816503;chrX_1816575_1816576 chrX_1815214_1816502;chrX_1816576_1816700 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 2.84 0.00 3.48 1.31 1.52 0.00 2.99 1.80 2.86 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.65 0.00 0.00 2.34 0.00 0.00 0.00 0.00 0.00 1.96 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 K jcn_only_AA I_chr2L_18697359_18697402,CG10341 chr2L + chr2L_18698977_18699038 chr2L_18698977_18699035 chr2L_18698833_18698976;chr2L_18699039_18700647 97.73 100.00 97.73 98.31 NA 96.88 97.10 100.00 97.78 NA 100.00 95.83 97.14 94.12 100.00 95.24 100.00 97.56 97.22 97.78 93.10 97.37 96.72 98.00 97.44 93.33 96.23 97.14 100.00 100.00 100.00 94.59 100.00 96.20 97.73 100.00 100.00 97.30 100.00 98.28 NA 94.74 100.00 94.74 93.55 100.00 98.63 100.00 100.00 96.30 100.00 100.00 97.22 100.00 100.00 95.24 97.67 95.59 K intron_retention cul-5 chr3R - chr3R_24886263_24886322 chr3R_24886262_24886263;chr3R_24886322_24886323 chr3R_24886084_24886262;chr3R_24886323_24886680 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG9875,CG34423,CG34424 chr2R + chr2R_19245870_19246355 chr2R_19246291_19246355 chr2R_19246356_19246419;chr2R_19245763_19245869 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 87.50 100.00 100.00 85.71 85.71 85.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG14425,Sxl,CG14425_Sxl,CEF_chrX_6984538_6992033 chrX - chrX_6991093_6992033 chrX_6991092_6991093;chrX_6992033_6992034 chrX_6991031_6991092;chrX_6992034_6992068 30.00 NA NA 9.09 NA NA NA 33.33 30.00 NA NA NA NA NA NA NA NA NA NA 17.65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA K intron_retention CG6006 chr3R + chr3R_11993931_11994137 chr3R_11993930_11993931;chr3R_11994137_11994138 chr3R_11993663_11993930;chr3R_11994138_11994429 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 1.96 0.00 0.00 0.00 0.00 3.57 0.00 2.63 0.00 0.00 0.00 0.00 0.00 2.56 1.96 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette stj chr2R + chr2R_9698342_9701304 chr2R_9698342_9699942;chr2R_9699997_9701304 chr2R_9699943_9699996 chr2R_9698258_9698341;chr2R_9701305_9701385 5.88 7.69 5.26 9.09 6.67 5.56 3.57 10.53 4.44 3.45 NA 19.23 4.76 5.88 4.35 NA 5.26 3.45 NA 5.13 NA 4.35 13.04 10.00 4.55 0.00 5.00 NA 6.25 7.14 8.33 NA 4.17 5.26 NA 4.88 3.77 8.33 6.25 0.00 7.69 8.70 NA 6.45 6.25 5.88 3.85 18.18 6.67 NA 6.45 4.55 8.33 NA 4.55 6.25 9.52 16.33 K intron_retention CG8974 chrX - chrX_15688235_15688299 chrX_15688234_15688235;chrX_15688299_15688300 chrX_15687752_15688234;chrX_15688300_15688392 0.00 0.00 0.80 0.00 0.00 0.00 0.45 0.53 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.86 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.71 1.00 2.11 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG17255,I_chrX_10359089_10359175,RI_chrX_10366177_10367270 chrX - chrX_10359089_10359175 chrX_10359101_10359175 chrX_10359176_10359275;chrX_10358989_10359088 99.65 99.32 98.82 100.00 100.00 100.00 100.00 100.00 98.94 100.00 98.70 100.00 100.00 100.00 99.07 100.00 100.00 98.99 100.00 99.54 100.00 99.59 99.10 98.64 98.50 100.00 99.07 99.32 98.72 100.00 100.00 100.00 100.00 99.12 100.00 99.22 99.65 100.00 99.13 99.53 100.00 99.56 100.00 99.19 100.00 100.00 99.44 99.21 100.00 100.00 99.43 98.75 100.00 97.97 98.25 100.00 98.09 98.77 K intron_retention pod1 chrX + chrX_6703171_6703517 chrX_6703170_6703171;chrX_6703517_6703518 chrX_6703097_6703170;chrX_6703518_6703690 0.00 0.00 0.00 1.89 0.00 2.50 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 NA 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 NA 2.86 0.00 0.00 0.00 K intron_retention CG10063,I_chr3L_6967574_6972726 chr3L - chr3L_6965330_6965391 chr3L_6965329_6965330;chr3L_6965391_6965392 chr3L_6964675_6965329;chr3L_6965392_6965603 41.67 NA NA 66.67 NA NA 36.36 41.67 40.00 NA NA NA NA NA NA 81.82 NA NA NA 41.67 NA 47.06 NA NA NA NA NA NA NA NA 69.23 NA NA NA NA NA NA NA NA 37.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N intron_retention CG1513,I_chr2R_5778649_5778739 chr2R - chr2R_5771508_5772126 chr2R_5771507_5771508;chr2R_5772126_5772127 chr2R_5771402_5771507;chr2R_5772127_5772213 15.38 NA NA 12.50 NA NA 22.73 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA ssp4,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13414818_13414880 chr2R_13414821_13414880 chr2R_13414881_13414944;chr2R_13414719_13414817 99.44 98.74 98.29 99.50 100.00 98.90 99.43 98.96 100.00 98.89 100.00 100.00 100.00 100.00 100.00 99.44 100.00 100.00 97.12 98.77 100.00 100.00 98.33 100.00 100.00 99.22 99.35 100.00 99.26 98.81 100.00 100.00 99.18 98.82 98.63 98.61 98.84 100.00 98.95 100.00 98.02 99.26 100.00 100.00 100.00 100.00 98.73 99.01 99.58 97.50 99.46 99.25 97.18 100.00 100.00 100.00 98.55 98.45 K cassette Mical,I_chr3R_5847106_5863537,R_chr3R_5853098_5863533,I_chr3R_5863483_5863537,I_chr3R_5863613_5868513 chr3R - chr3R_5847106_5863537 chr3R_5847106_5853051;chr3R_5853104_5863537 chr3R_5853052_5853103 chr3R_5847006_5847105;chr3R_5863538_5863561 90.00 85.71 90.91 94.74 100.00 NA 65.00 83.33 82.76 77.78 90.91 94.44 81.82 85.71 90.00 91.67 83.33 80.00 92.86 93.33 90.00 96.43 80.00 90.00 55.56 88.89 81.82 70.00 91.67 93.75 88.89 NA 90.00 82.61 88.89 72.73 94.12 87.50 90.00 90.91 NA 95.83 87.50 88.24 NA 100.00 NA 91.67 94.12 NA 93.33 NA 87.50 NA 100.00 NA NA NA K alternative_donor Tsp66E chr3L + chr3L_8905872_8906068;chr3L_8905846_8906068 chr3L_8905697_8906068 chr3L_8906069_8906085;chr3L_8905674_8905696 20.00 NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Vha100-1,I_chr3R_24958227_24960770,RI_chr3R_24959152_24959582,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24959152_24960770 chr3R_24959151_24959152;chr3R_24960770_24960771 chr3R_24959060_24959151;chr3R_24960771_24960870 8.51 8.82 0.00 14.71 0.00 9.09 17.39 6.90 17.31 0.00 22.22 19.51 5.26 21.05 6.67 3.85 5.26 14.29 4.76 16.28 0.00 26.32 10.47 7.69 11.11 3.85 11.11 7.32 9.52 7.69 0.00 0.00 4.11 13.16 6.67 4.55 10.14 14.89 9.86 17.02 2.99 9.38 0.00 8.33 6.12 10.64 9.30 9.23 8.51 3.23 11.69 10.71 5.71 8.57 15.38 0.00 5.56 5.63 K jcn_only_AA frtz chr2L - chr2L_1714474_1715138;chr2L_1714406_1715138 chr2L_1714427_1715138 chr2L_1715139_1715811;chr2L_1714173_1714405 0.00 NA NA 8.33 NA NA 0.00 0.00 2.17 NA NA 2.44 NA NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 4.35 2.50 0.00 0.00 0.00 NA 0.00 NA 0.00 4.35 NA NA NA 0.00 0.00 2.56 0.00 NA NA 0.00 NA 0.00 NA K intron_retention CG9086,CEI_chrX_16859981_16861527,I_chrX_16861895_16862053 chrX - chrX_16861895_16862542 chrX_16861894_16861895;chrX_16862542_16862543 chrX_16861795_16861894;chrX_16862543_16862684 6.06 0.00 10.71 12.00 15.38 0.00 5.56 7.50 9.68 0.00 NA 0.00 10.71 0.00 7.69 7.55 9.52 0.00 3.85 3.92 5.26 3.85 12.90 22.22 NA 17.65 0.00 NA NA 6.25 5.13 NA NA 4.65 0.00 0.00 0.00 NA 12.50 0.00 NA 15.38 8.70 15.00 NA 6.67 NA 0.00 6.06 NA 9.09 14.29 NA NA 3.85 NA NA NA K intron_retention noncoding_10144,CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2429430_2434625 chr3L_2429429_2429430;chr3L_2434625_2434626 chr3L_2429383_2429429;chr3L_2434626_2434645 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA 0.00 NA 0.00 8.82 11.11 0.00 NA NA 3.70 NA NA 0.00 NA NA NA 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA K intron_retention phtf,I_chr2R_2629598_2630209 chr2R + chr2R_2632283_2632342 chr2R_2632282_2632283;chr2R_2632342_2632343 chr2R_2632108_2632282;chr2R_2632343_2632699 12.25 12.00 NA 21.21 17.65 4.35 13.04 17.65 13.64 15.38 0.00 15.79 NA 12.50 7.41 22.22 0.00 9.09 14.29 8.16 17.39 40.00 15.38 17.39 0.00 NA 20.00 NA 52.63 19.05 13.04 NA 9.68 17.39 13.79 17.86 10.71 8.00 2.38 12.50 25.00 13.95 17.65 0.00 8.70 5.71 6.67 5.00 9.38 3.85 7.89 8.33 8.33 13.79 11.76 0.00 0.00 6.67 K jcn_only_AD trio,I_chr3L_999683_1009321 chr3L - chr3L_1034066_1034762 chr3L_1034066_1034753 chr3L_1033650_1034065;chr3L_1034763_1034875 0.00 0.00 NA 4.55 NA NA NA 0.00 2.56 NA NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA NA 2.53 0.00 5.00 NA 0.00 NA NA 5.13 NA NA NA 0.00 NA 3.70 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA NA 0.00 NA 2.50 0.00 NA NA 0.00 NA NA NA K jcn_only_AD Mmp1,E_chr2R_20560380_20562585,I_chr2R_20564123_20565214,I_chr2R_20569965_20572193 chr2R - chr2R_20560840_20562585 chr2R_20560840_20562495 chr2R_20560775_20560839;chr2R_20562586_20562664 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG3358 chr2R + chr2R_2810923_2810984 chr2R_2810922_2810923;chr2R_2810984_2810985 chr2R_2810875_2810922;chr2R_2810985_2811164 23.53 NA NA NA NA NA NA NA 10.81 NA NA 35.71 NA NA 21.43 NA 15.38 NA 6.67 17.65 NA NA 42.86 40.00 45.45 NA NA NA 69.23 60.00 NA 14.29 12.50 12.50 NA NA 33.33 38.46 33.33 24.24 NA 19.05 NA 33.33 23.53 NA 23.53 NA 14.29 31.82 NA NA 20.00 NA NA NA 12.50 14.29 K alternative_donor Pect,I_chr2L_13207997_13208109 chr2L + chr2L_13204273_13208109 chr2L_13207997_13208109 chr2L_13208110_13208209;chr2L_13203768_13204272 0.96 0.96 0.97 1.25 0.99 0.69 1.69 1.20 1.16 0.55 0.90 1.07 1.15 1.26 0.94 1.50 1.29 0.89 1.43 0.94 0.89 1.05 0.94 0.96 1.07 1.17 1.42 1.55 0.73 0.67 0.88 0.57 0.35 1.31 1.09 0.86 0.57 0.93 0.64 0.56 0.53 1.02 1.54 1.27 0.46 0.75 1.16 0.49 1.35 0.82 1.17 1.18 0.58 1.06 1.23 0.77 0.76 0.36 K intron_retention lola,I_chr2R_6380094_6419543,I_chr2R_6380747_6419543,I_chr2R_6394546_6419543,I_chr2R_6404486_6419543,R_chr2R_6408775_6419537,I_chr2R_6409616_6419543,I_chr2R_6413368_6414281,I_chr2R_6419625_6419686,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6410475_6419543 chr2R_6410474_6410475;chr2R_6419543_6419544 chr2R_6410419_6410474;chr2R_6419544_6419624 53.51 42.86 54.84 68.42 64.00 57.14 73.53 69.23 60.00 NA 65.22 60.87 71.43 64.00 50.00 63.89 61.90 65.22 69.57 62.50 50.00 35.14 56.45 38.89 63.16 85.71 45.65 37.84 30.56 36.36 58.62 25.71 35.14 75.00 67.74 67.74 52.17 40.00 43.59 36.76 32.50 56.52 64.71 50.00 27.59 26.83 25.93 37.31 67.27 21.43 44.44 62.50 31.03 32.14 57.14 41.38 32.00 31.67 K intron_retention SMSr chr3L - chr3L_7369009_7369748 chr3L_7369008_7369009;chr3L_7369748_7369749 chr3L_7368505_7369008;chr3L_7369749_7369880 58.33 47.37 50.00 48.15 NA 43.75 58.82 68.18 58.82 NA NA 47.06 75.00 71.43 43.75 44.44 50.00 43.75 57.14 56.00 45.45 NA 68.18 66.67 80.00 42.86 72.22 60.00 58.33 61.54 71.43 NA NA 53.33 59.09 55.00 52.63 55.00 58.33 38.24 NA 53.85 60.00 58.82 NA 66.67 55.56 77.78 52.00 87.50 63.33 75.00 NA 57.89 46.15 75.00 60.00 NA K jcn_only_AD CG4858,I_chr3L_20520381_20520577,EI_chr3L_20520642_20520692 chr3L + chr3L_20520642_20520692;chr3L_20520381_20520692 chr3L_20520377_20520692 chr3L_20520693_20520792;chr3L_20520281_20520376 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.58 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 K intron_retention eIF4G,I_chr4_948813_950447 chr4 - chr4_936345_936462 chr4_936344_936345;chr4_936462_936463 chr4_936243_936344;chr4_936463_936685 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.48 0.00 0.00 0.00 1.13 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.76 0.00 1.00 0.00 0.00 0.00 0.00 0.00 1.04 0.23 0.00 0.64 0.00 0.00 0.79 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 K alternative_donor Dcp2,F_chr3L_15815909_15816023,F_chr3L_15817090_15817547 chr3L - chr3L_15817090_15819385;chr3L_15817090_15818570 chr3L_15817090_15817547 chr3L_15816990_15817089;chr3L_15819386_15819487 2.38 1.67 2.78 1.50 1.96 1.69 2.26 2.42 0.98 11.11 3.77 1.24 2.47 2.41 2.53 1.72 1.32 3.64 2.11 1.18 1.72 4.17 2.25 2.04 4.35 2.50 5.00 2.50 14.58 1.64 2.38 4.55 3.53 1.92 2.00 2.99 1.56 2.22 2.13 2.17 7.69 2.07 1.22 2.78 5.88 2.63 3.12 2.08 1.30 4.76 1.45 2.04 5.88 5.26 2.08 4.17 5.56 2.70 K alternative_acceptor Mocs1 chr3L + chr3L_11065511_11065549;chr3L_11065511_11065661 chr3L_11065511_11065569 chr3L_11064659_11065510;chr3L_11065662_11066454 66.67 59.09 68.18 74.19 90.91 72.22 71.43 56.67 62.16 57.14 53.85 72.41 46.15 69.23 61.11 70.37 90.91 76.47 60.00 62.16 40.00 63.64 69.77 66.67 74.07 61.11 57.14 62.07 52.31 75.00 66.67 64.86 78.57 75.00 68.00 54.84 76.00 66.67 68.75 68.00 61.22 67.65 80.00 74.36 58.49 58.14 71.43 61.82 56.25 72.22 62.86 72.22 73.33 73.33 63.16 79.17 61.29 60.71 K alternative_acceptor how chr3R + chr3R_17897764_17900173 chr3R_17897764_17900170 chr3R_17897461_17897763;chr3R_17900174_17900666 35.71 37.78 45.45 40.00 19.05 47.37 37.93 40.62 30.65 28.57 26.67 33.33 60.00 35.71 40.00 45.45 40.00 20.83 23.53 42.00 33.33 33.33 33.87 29.41 37.50 36.36 27.66 28.57 52.63 45.45 34.29 35.71 33.33 35.48 41.18 30.61 42.59 43.75 25.00 36.17 46.15 36.17 36.36 34.43 41.67 39.13 17.65 39.29 50.00 24.24 39.53 32.00 33.33 37.04 28.57 32.00 34.48 33.33 K alternative_acceptor armi,I_chr3L_3466623_3467559 chr3L + chr3L_3461671_3462120 chr3L_3461671_3462103 chr3L_3461541_3461670;chr3L_3462121_3462299 2.17 2.00 0.00 0.00 0.00 2.17 1.47 2.06 2.63 0.00 1.79 0.00 4.48 2.04 2.17 1.54 0.00 1.54 1.85 1.36 0.00 5.26 3.57 3.12 3.03 2.27 4.17 1.82 4.65 1.35 8.06 2.56 3.31 2.90 2.17 0.00 2.44 1.67 3.70 2.41 0.00 3.51 2.38 0.00 5.00 5.88 2.63 3.23 1.14 4.55 4.76 1.96 0.00 0.00 0.00 3.57 3.12 6.45 K intron_retention miple2,I_chr3L_274251_274594 chr3L + chr3L_274808_274866 chr3L_274807_274808;chr3L_274866_274867 chr3L_274595_274807;chr3L_274867_274969 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 K intron_retention AcCoAS,I_chr3L_21265768_21265914 chr3L - chr3L_21265978_21266050 chr3L_21265977_21265978;chr3L_21266050_21266051 chr3L_21265915_21265977;chr3L_21266051_21266789 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9674,I_chr3L_16785451_16785540,I_chr3L_16785706_16785748,I_chr3L_16793055_16800660 chr3L - chr3L_16785436_16785540 chr3L_16785435_16785436;chr3L_16785540_16785541 chr3L_16785351_16785435;chr3L_16785541_16785640 36.67 34.78 63.64 26.32 45.45 25.00 22.86 35.00 40.91 19.05 NA 36.67 42.86 52.38 40.00 52.63 45.00 0.00 40.00 43.48 NA 14.04 47.62 32.00 47.37 41.18 27.59 16.67 16.22 26.67 19.35 41.67 28.07 48.48 38.89 60.00 41.67 31.58 37.50 27.27 38.89 26.32 NA 25.00 30.77 31.82 42.86 34.38 35.71 46.67 35.29 26.67 37.50 NA 34.78 41.18 54.55 36.84 K intron_retention lqf,I_chr3L_7522287_7522807 chr3L + chr3L_7528745_7529103 chr3L_7528744_7528745;chr3L_7529103_7529104 chr3L_7528643_7528744;chr3L_7529104_7529535 60.00 NA NA NA NA NA NA NA 90.91 NA NA NA NA NA NA NA NA NA NA 42.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG4709,RI_chr2L_9954545_9954595 chr2L + chr2L_9954535_9954595 chr2L_9954545_9954595 chr2L_9954596_9954601;chr2L_9954445_9954534 7.14 NA NA NA NA NA NA NA 7.14 NA NA NA NA NA NA 15.38 NA NA NA 7.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Rph,I_chrX_10644396_10644958,I_chrX_10646283_10647245,I_chrX_10647710_10648325,RI_chrX_10649048_10651427 chrX - chrX_10645816_10647245 chrX_10645815_10645816;chrX_10647245_10647246 chrX_10644959_10645815;chrX_10647246_10647345 0.00 0.00 0.00 NA 0.00 0.00 NA 11.11 0.00 NA NA 12.50 6.67 NA 10.34 NA 6.67 0.00 0.00 6.25 NA 7.69 NA 0.00 NA NA NA NA NA NA 0.00 NA NA 6.25 NA 0.00 0.00 NA 9.09 0.00 NA 0.00 NA NA 0.00 NA NA 0.00 11.43 0.00 0.00 NA 6.25 NA 0.00 NA 0.00 0.00 K jcn_only_AA CG1646,RI_chr3R_24638209_24638280,I_chr3R_24641816_24641874 chr3R + chr3R_24637877_24638116;chr3R_24637877_24637958 chr3R_24637877_24637948 chr3R_24637841_24637876;chr3R_24638117_24638208 4.55 6.56 8.91 5.52 6.33 5.88 13.51 4.17 5.70 6.67 7.06 2.23 7.27 4.55 3.96 9.30 7.35 3.23 11.11 2.52 3.61 9.41 9.09 6.90 6.25 6.93 5.36 9.80 2.65 0.85 7.14 0.84 0.47 6.90 2.90 3.08 2.62 5.81 1.77 4.61 1.33 6.67 3.17 3.96 0.88 0.97 3.45 3.45 3.11 1.96 0.00 2.86 4.55 0.00 3.88 5.00 4.69 0.89 K intron_retention RI_chr2R_3817895_3817951,RI_chr2R_3819348_3819403,CG8728 chr2R - chr2R_3825214_3825266 chr2R_3825213_3825214;chr2R_3825266_3825267 chr2R_3824709_3825213;chr2R_3825267_3825407 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG12734,I_chr3L_3183812_3183932,I_chr3L_3184645_3185360 chr3L + chr3L_3183998_3184248 chr3L_3184038_3184248 chr3L_3184249_3185272;chr3L_3183933_3183997 97.02 100.00 NA 95.24 NA NA 96.00 93.10 98.00 96.55 NA 92.31 NA NA 92.00 100.00 NA NA NA 100.00 100.00 100.00 98.48 94.59 92.59 NA 100.00 95.24 96.55 100.00 100.00 93.33 96.43 100.00 85.71 96.15 95.16 97.06 97.33 85.71 100.00 100.00 NA 96.97 88.89 94.29 94.12 NA 97.06 100.00 97.92 NA NA 100.00 100.00 97.96 96.97 NA K alternative_donor CoRest,I_chrX_19416977_19417035 chrX + chrX_19416977_19417035;chrX_19416431_19417035;chrX_19416669_19417035;chrX_19416423_19417035 chrX_19416603_19417035 chrX_19417036_19417135;chrX_19416201_19416422 6.52 9.38 11.11 3.85 10.00 9.76 2.63 3.85 7.41 8.82 5.88 10.00 5.88 5.88 6.67 12.77 12.50 7.14 5.56 9.28 6.06 10.29 5.49 7.59 6.82 5.66 4.69 7.69 4.08 4.00 13.95 4.88 3.64 5.00 3.64 3.08 5.61 6.74 4.76 1.96 0.00 7.87 7.14 4.00 4.17 0.00 7.69 3.45 7.41 4.08 6.38 6.82 10.53 8.33 11.32 9.09 12.20 6.52 K intron_retention unc-13,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_924098_924986 chr4_924097_924098;chr4_924986_924987 chr4_923998_924097;chr4_924987_925545 13.33 NA NA NA NA NA NA 20.00 NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 13.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor sina chr3L + chr3L_16847053_16849396 chr3L_16847626_16849396 chr3L_16849397_16852050;chr3L_16846848_16847052 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.25 100.00 100.00 100.00 98.04 100.00 100.00 100.00 97.18 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 95.45 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 K alternative_acceptor CG2126,RI_chr3R_27601238_27601280,RI_chr3R_27602105_27602308 chr3R - chr3R_27601225_27601280 chr3R_27601238_27601280 chr3R_27601281_27601380;chr3R_27601138_27601224 0.00 0.00 0.00 6.45 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 4.92 NA 0.00 0.00 0.00 0.00 NA 6.67 10.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 2.78 4.76 0.00 NA 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 K intron_retention Arp14D,RE_chrX_16445264_16446372 chrX - chrX_16444220_16444282 chrX_16444219_16444220;chrX_16444282_16444283 chrX_16444010_16444219;chrX_16444283_16444498 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention MB8.chrX.pasa.104 chrX + chrX_14596597_14596650 chrX_14596596_14596597;chrX_14596650_14596651 chrX_14596395_14596596;chrX_14596651_14597077 0.00 0.00 0.00 0.94 0.00 0.00 0.93 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 5.66 0.00 4.17 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 3.23 K intron_retention CG6422,RI_chr3R_20863994_20864142 chr3R - chr3R_20862440_20863932 chr3R_20862439_20862440;chr3R_20863932_20863933 chr3R_20862345_20862439;chr3R_20863933_20863993 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 2.78 4.76 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Syx7,I_chr3L_21439901_21439962 chr3L + chr3L_21438969_21439032 chr3L_21438968_21438969;chr3L_21439032_21439033 chr3L_21438959_21438968;chr3L_21439033_21439123 97.22 97.83 87.76 96.34 97.37 96.97 94.87 98.75 93.85 100.00 94.44 98.68 95.56 92.16 91.84 95.70 94.55 91.67 98.15 95.24 91.30 87.10 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 94.44 73.33 94.94 96.43 100.00 98.04 96.67 97.78 97.56 NA 92.86 96.67 100.00 95.65 97.06 95.65 100.00 94.00 97.78 100.00 96.97 100.00 100.00 93.33 97.78 100.00 100.00 K intron_retention spz chr3R - chr3R_22892388_22893079 chr3R_22892387_22892388;chr3R_22893079_22893080 chr3R_22892330_22892387;chr3R_22893080_22893093 97.83 97.14 100.00 94.00 95.83 96.00 98.04 100.00 97.56 94.44 93.10 98.80 100.00 100.00 97.67 97.37 100.00 93.33 100.00 100.00 95.24 96.67 97.87 100.00 96.88 97.83 93.75 100.00 92.59 95.00 100.00 100.00 97.22 93.88 96.77 100.00 97.37 92.59 98.00 96.00 100.00 98.57 95.45 100.00 96.00 100.00 100.00 97.22 98.51 100.00 100.00 96.55 100.00 100.00 100.00 97.14 100.00 92.11 K jcn_only_AA cno,I_chr3R_999718_999986,I_chr3R_999737_999777 chr3R - chr3R_999718_999777 chr3R_999737_999777 chr3R_999778_999877;chr3R_999637_999717 1.33 0.00 1.23 2.80 2.86 1.19 1.38 2.30 1.43 0.00 1.41 2.92 1.52 2.94 0.00 0.00 3.70 1.10 1.23 1.33 0.00 0.56 1.98 0.66 0.85 0.00 2.14 2.16 2.17 0.84 0.00 0.00 2.73 1.00 2.25 1.52 1.94 2.00 0.91 0.61 0.00 1.19 1.96 2.56 0.00 2.02 2.91 0.00 2.17 0.43 1.07 0.00 1.90 0.65 2.22 1.57 1.92 0.00 K intron_retention faf,RI_chr3R_27603474_27603893,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27603474_27603893 chr3R_27603473_27603474;chr3R_27603893_27603894 chr3R_27603374_27603473;chr3R_27603894_27603993 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention MB8.chr3R.pasa.66,CG1091,I_chr3R_2910490_2910662,RI_chr3R_2910490_2910686,RI_chr3R_2911041_2911135,RI_chr3R_2946518_2946663 chr3R - chr3R_2910490_2910646 chr3R_2910489_2910490;chr3R_2910646_2910647 chr3R_2910390_2910489;chr3R_2910647_2911040 0.00 0.00 0.00 0.00 5.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 2.22 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 3.03 0.00 1.67 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Pdi,RE_chr3L_15131606_15135404,I_chr3L_15132625_15133292 chr3L - chr3L_15132625_15135399 chr3L_15132625_15133292 chr3L_15132525_15132624;chr3L_15135400_15135940 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.17 0.07 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.05 0.00 0.00 0.06 0.11 0.00 0.06 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon mura,I_chr3R_5373093_5376618,RI_chr3R_5373093_5377292,CR42549,noncoding_15610,I_chr3R_5375533_5376618,RI_chr3R_5380786_5380850 chr3R - chr3R_5373093_5377487 chr3R_5375533_5377487 chr3R_5372520_5373092 chr3R_5373826_5375532 chr3R_5377488_5377520 78.87 93.10 83.33 64.38 72.00 76.00 71.88 81.08 79.59 33.33 75.86 87.30 97.22 86.84 75.00 80.00 79.31 72.41 86.11 78.21 65.22 59.09 65.75 84.09 76.32 80.00 78.57 93.94 54.90 63.04 83.87 87.10 58.82 80.95 76.92 62.00 65.62 68.97 64.15 87.14 80.00 75.00 86.21 63.16 69.23 84.62 95.12 80.85 78.87 88.37 94.12 81.48 56.52 90.00 83.72 89.47 76.47 65.38 K intron_retention RhoGAP93B chr3R - chr3R_16914410_16921813 chr3R_16914409_16914410;chr3R_16921813_16921814 chr3R_16914018_16914409;chr3R_16921814_16921904 0.00 0.00 0.00 4.26 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.00 0.00 0.00 0.00 0.00 0.00 NA NA K intron_retention CG2225 chr2L - chr2L_21671141_21671228 chr2L_21671140_21671141;chr2L_21671228_21671229 chr2L_21670535_21671140;chr2L_21671229_21671391 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 9.09 21.74 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA NA N jcn_only_AA Fer1HCH,I_chr3R_26212319_26213496,I_chr3R_26213132_26213185 chr3R - chr3R_26211964_26212040 chr3R_26211979_26212040 chr3R_26212041_26212109;chr3R_26211898_26211963 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG32582,I_chrX_15730402_15730457 chrX + chrX_15730242_15730314 chrX_15730241_15730242;chrX_15730314_15730315 chrX_15730223_15730241;chrX_15730315_15730401 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.56 NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.25 NA 0.00 NA NA NA 0.00 NA NA 0.00 NA 0.00 NA 4.35 NA 0.00 0.00 NA 0.00 0.00 NA K intron_retention CG10107,CG10103 chr3L - chr3L_6738069_6738130 chr3L_6738068_6738069;chr3L_6738130_6738131 chr3L_6737524_6738068;chr3L_6738131_6739587 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 1.20 2.88 2.18 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 K jcn_only_AA CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_155591_155927,I_chr4_157794_157864 chr4 + chr4_155591_157504 chr4_155591_155927 chr4_155499_155590;chr4_157505_157604 0.00 0.00 0.00 0.00 NA 3.85 0.00 0.00 0.00 NA 8.33 2.86 NA 0.00 3.03 3.45 0.00 4.00 0.00 1.85 9.52 NA 0.00 NA NA 0.00 NA NA NA NA 1.92 NA NA 2.60 NA NA NA NA NA 2.70 NA 1.72 0.00 0.00 NA NA NA 0.00 1.14 NA NA NA NA NA 0.00 NA NA NA K alternative_acceptor bip2,RI_chr4_481674_487126,RI_chr4_483128_487126,RI_chr4_486609_487126 chr4 - chr4_485942_487126;chr4_485855_487126 chr4_486609_487126 chr4_487127_487226;chr4_485750_485854 5.00 0.00 6.25 18.18 0.00 10.00 2.44 5.56 4.35 0.00 5.56 10.53 0.00 5.00 4.35 6.45 6.25 29.41 5.00 2.94 5.88 NA 5.88 8.33 0.00 9.09 5.88 0.00 0.00 10.00 4.00 NA 0.00 5.00 0.00 0.00 0.00 0.00 7.14 5.00 NA 2.78 0.00 4.35 16.67 10.00 0.00 11.11 2.70 14.29 5.88 7.14 0.00 0.00 4.17 14.29 NA 16.67 K alternative_acceptor CG9007,RI_chr3L_14010982_14011111 chr3L + chr3L_14010982_14011111 chr3L_14010982_14011045 chr3L_14010882_14010981;chr3L_14011112_14011211 97.22 95.00 96.00 97.22 94.12 100.00 100.00 93.33 96.43 100.00 92.86 100.00 100.00 95.65 100.00 97.06 100.00 94.74 100.00 97.56 100.00 94.44 94.59 95.65 100.00 100.00 95.45 100.00 93.75 100.00 100.00 100.00 94.44 95.35 93.33 93.75 96.00 100.00 100.00 96.00 100.00 97.67 95.24 100.00 90.00 100.00 100.00 95.65 95.83 100.00 100.00 94.12 100.00 87.50 92.00 92.86 100.00 100.00 K intron_retention how chr3R + chr3R_17897764_17900170 chr3R_17897763_17897764;chr3R_17900170_17900171 chr3R_17897461_17897763;chr3R_17900171_17900666 8.70 6.25 8.70 13.64 NA 5.26 25.00 19.23 13.51 NA NA 11.76 33.33 NA 11.76 10.53 14.29 NA NA 7.69 NA 5.71 7.69 10.71 11.11 0.00 0.00 9.52 0.00 7.14 8.70 NA 3.45 10.53 3.57 7.14 8.89 3.70 14.29 6.25 NA 6.06 5.56 7.69 NA 10.53 NA 0.00 10.81 6.67 6.25 0.00 10.53 10.00 0.00 14.29 10.53 NA K alternative_donor Lip4 chr2L + chr2L_10530670_10530855 chr2L_10530676_10530855 chr2L_10530856_10531517;chr2L_10530314_10530669 29.46 28.45 30.68 27.70 30.14 24.32 32.81 30.28 27.81 25.61 40.00 33.33 33.33 28.41 30.34 30.25 35.14 27.08 92.86 32.30 33.33 28.69 25.34 28.97 29.47 42.67 24.16 25.89 35.29 29.46 33.86 27.84 35.00 26.32 29.46 28.57 29.14 29.46 25.85 20.92 36.13 30.77 29.85 34.25 28.48 35.26 25.81 30.67 34.18 29.11 33.54 30.85 25.94 25.35 28.57 26.72 27.61 28.05 K jcn_only_AD vkg,I_chr2L_5027222_5027297,I_chr2L_5027222_5028118 chr2L - chr2L_5027222_5027297;chr2L_5027222_5028118 chr2L_5027222_5027351 chr2L_5027122_5027221;chr2L_5028119_5028218 89.45 92.61 92.54 88.93 95.59 94.44 87.34 84.77 92.88 88.24 96.31 85.95 85.81 88.67 83.57 93.25 93.17 88.48 88.89 84.16 91.01 80.91 88.71 92.46 90.48 87.50 89.74 94.59 88.00 87.23 93.06 89.32 81.25 89.57 75.36 70.49 96.46 97.74 93.81 89.45 87.30 91.24 89.08 92.86 80.00 85.06 90.41 86.21 87.20 91.47 93.39 90.05 88.81 82.50 90.91 92.22 93.28 92.02 K intron_retention zf30C chr2L + chr2L_9758754_9759679 chr2L_9758753_9758754;chr2L_9759679_9759680 chr2L_9758454_9758753;chr2L_9759680_9760053 0.00 0.00 0.00 3.85 0.00 0.00 0.98 0.00 2.01 0.00 0.00 0.00 0.00 0.00 0.00 2.15 0.00 2.94 0.00 1.41 0.00 3.85 0.00 2.90 0.00 0.00 8.75 12.24 0.00 0.00 0.00 0.00 1.06 0.85 0.00 2.38 0.00 1.67 1.68 0.00 0.00 1.22 0.00 2.86 0.97 1.94 0.00 0.00 0.00 1.64 2.13 0.00 0.00 0.00 2.50 0.00 0.00 0.00 K cassette rump,I_chr3R_5338175_5338299 chr3R - chr3R_5333109_5335157 chr3R_5333109_5334012;chr3R_5334152_5335157 chr3R_5334013_5334151 chr3R_5331980_5333108;chr3R_5335158_5335257 79.21 87.63 87.36 92.59 90.70 89.02 89.17 93.42 92.89 61.54 89.39 88.96 84.00 93.88 94.25 95.24 95.45 91.09 97.17 98.04 91.18 71.53 75.16 72.59 66.67 90.80 84.11 67.82 47.32 68.85 62.04 60.00 70.17 94.61 78.43 56.10 66.67 75.44 62.93 69.16 67.72 89.89 98.81 59.48 57.69 61.36 78.64 54.02 92.19 79.21 73.81 80.00 74.03 64.89 88.70 73.60 82.72 68.51 K multi_cassette Gprk1,R_chr2R_238724_265876,RI_chr2R_354997_358274,RI_chr2R_357455_358274 chr2R - chr2R_315503_358274 chr2R_315503_345527;chr2R_345603_345654;chr2R_345761_345811;chr2R_345886_345945;chr2R_346023_358274 chr2R_345528_345602;chr2R_345655_345760;chr2R_345812_345885;chr2R_345946_346022 chr2R_315493_315502;chr2R_358275_358374 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 95.24 NA 100.00 100.00 100.00 88.89 100.00 95.83 100.00 75.00 100.00 100.00 83.33 100.00 100.00 100.00 NA 66.67 100.00 NA 60.00 100.00 83.33 100.00 66.67 93.75 100.00 100.00 NA NA NA 85.71 83.33 90.91 100.00 100.00 66.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 K alternative_acceptor Nup153,I_chrX_16495232_16495296 chrX + chrX_16495232_16495408 chrX_16495232_16495296 chrX_16495132_16495231;chrX_16495409_16499819 0.00 0.00 1.54 1.43 0.00 0.00 5.88 1.23 0.00 1.75 0.00 0.83 2.38 1.49 1.47 1.33 0.00 0.00 0.00 0.00 2.00 3.39 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 2.35 4.35 2.07 0.00 2.50 0.00 0.00 0.00 1.54 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Dbp80,E_chr3LHet_2513829_2513928 chr3LHet + chr3LHet_2473307_2543665 chr3LHet_2473307_2503937;chr3LHet_2504074_2543665 chr3LHet_2503938_2504073 chr3LHet_2473205_2473306;chr3LHet_2543666_2543794 100.00 100.00 100.00 100.00 90.91 94.44 100.00 100.00 97.78 NA NA 96.97 100.00 100.00 100.00 100.00 94.12 100.00 100.00 95.83 NA 100.00 88.89 90.00 100.00 100.00 100.00 NA 100.00 NA 96.55 NA NA 97.14 NA NA 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 93.75 100.00 K alternative_donor I_chr2L_19388570_19389922,CG17544 chr2L - chr2L_19393657_19398346;chr2L_19393657_19398334 chr2L_19393657_19398350 chr2L_19393497_19393656;chr2L_19398351_19398401 50.63 54.17 49.59 58.29 60.34 60.18 50.47 51.61 50.23 47.46 52.38 54.07 46.48 55.83 41.03 47.95 49.32 54.29 49.55 52.80 50.63 47.57 52.68 51.79 41.18 55.14 52.38 41.46 35.85 52.80 50.00 49.49 43.72 50.97 51.26 54.63 50.00 39.71 45.57 57.05 45.00 47.19 53.68 52.85 51.59 55.17 52.24 49.26 52.61 49.12 46.79 46.15 48.57 58.14 55.94 54.84 46.15 48.13 K cassette rut,I_chrX_14718760_14718821 chrX - chrX_14690156_14692907 chrX_14690156_14691324;chrX_14691556_14692907 chrX_14691325_14691555 chrX_14689682_14690155;chrX_14692908_14693198 0.00 7.69 NA NA 0.00 NA NA NA 0.00 0.00 NA 15.79 NA NA 0.00 NA NA NA NA 0.00 NA 10.53 0.00 0.00 NA NA NA NA 0.00 NA NA NA 0.00 0.00 NA NA 4.00 0.00 NA 6.45 NA 0.00 NA 4.17 NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA K intron_retention Flo,I_chr2R_11456012_11456623 chr2R - chr2R_11454097_11454307 chr2R_11454096_11454097;chr2R_11454307_11454308 chr2R_11453894_11454096;chr2R_11454308_11454472 1.19 0.89 2.13 0.00 0.00 0.00 8.53 2.48 1.82 0.00 3.03 1.07 0.00 2.33 1.82 1.24 0.00 1.32 0.00 2.34 1.47 1.19 0.66 2.38 6.06 4.12 3.85 0.00 6.90 0.00 2.73 0.00 2.35 0.00 0.00 2.67 0.00 0.85 0.00 0.70 2.97 1.11 2.38 1.68 0.00 0.00 0.00 0.00 1.83 2.20 1.48 1.19 0.00 0.92 1.63 1.46 0.47 1.09 K alternative_acceptor Ard1,noncoding_11800 chr3L + chr3L_9965498_9965980;chr3L_9965498_9966021 chr3L_9965498_9965994 chr3L_9965419_9965497;chr3L_9966022_9966054 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA 12.50 NA NA NA 12.50 NA NA NA 16.67 NA NA NA NA NA NA 0.00 28.57 0.00 NA NA NA NA 0.00 NA NA NA NA NA 0.00 0.00 0.00 NA NA 0.00 9.09 NA 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 K intron_retention nod,I_chrX_11475074_11475402 chrX + chrX_11476218_11478338 chrX_11476217_11476218;chrX_11478338_11478339 chrX_11476072_11476217;chrX_11478339_11478529 26.32 16.67 14.29 26.32 10.53 33.33 21.43 21.05 28.12 36.84 20.00 31.43 NA 33.33 29.17 33.33 25.00 36.84 30.77 28.95 35.00 NA 21.43 12.50 20.00 11.11 13.64 NA 53.33 25.00 58.82 46.15 43.75 25.00 17.65 19.05 13.95 23.08 16.67 28.57 43.75 21.95 21.05 20.00 29.41 37.04 53.33 40.74 17.65 26.32 24.00 17.39 35.29 25.00 NA 31.25 46.15 53.33 K jcn_only_AA CG6838,I_chr3L_22709306_22709668 chr3L - chr3L_22710167_22710293 chr3L_22710181_22710293 chr3L_22710294_22710303;chr3L_22710071_22710166 72.57 NA NA 92.11 NA NA NA 66.67 68.57 NA NA 65.38 NA NA NA 58.33 NA NA NA 72.73 NA 72.41 NA 77.27 NA NA NA NA NA NA NA NA NA 71.43 NA NA 72.73 NA 59.38 79.41 NA 72.73 NA NA NA NA NA NA 56.52 NA NA NA NA NA 78.26 80.95 NA NA K intron_retention Nuf2 chr2L - chr2L_7064975_7065031 chr2L_7064974_7064975;chr2L_7065031_7065032 chr2L_7064429_7064974;chr2L_7065032_7065375 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 1.41 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD tws,I_chr3R_5960899_5960978,CG6241 chr3R - chr3R_5959310_5960163;chr3R_5959310_5960101;chr3R_5959310_5960041;chr3R_5959310_5960049;chr3R_5959310_5960182;chr3R_5959310_5960026;chr3R_5959310_5960158;chr3R_5959310_5959679 chr3R_5959310_5959789 chr3R_5958937_5959309;chr3R_5960183_5960224 0.00 0.00 0.00 1.19 0.00 0.00 0.95 0.93 0.00 0.00 0.00 3.90 0.00 0.00 0.00 2.75 0.00 0.00 3.08 0.00 6.45 0.00 0.00 6.90 3.70 2.27 3.45 4.17 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA 2.00 4.55 0.00 0.00 0.00 5.00 0.00 NA 1.92 1.08 3.85 0.00 0.00 NA NA 0.00 3.33 NA 0.00 K intron_retention Su(var)2-HP2 chr2R - chr2R_10499197_10499285 chr2R_10499196_10499197;chr2R_10499285_10499286 chr2R_10499125_10499196;chr2R_10499286_10499446 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 4.35 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA K intron_retention Sir2 chr2L + chr2L_13167201_13167379 chr2L_13167200_13167201;chr2L_13167379_13167380 chr2L_13165551_13167200;chr2L_13167380_13169531 7.41 8.57 6.67 21.43 9.09 0.00 10.00 6.67 4.92 8.70 9.52 4.44 12.50 3.70 7.41 5.41 8.70 7.41 0.00 7.14 0.00 9.43 5.56 8.82 12.00 0.00 13.79 24.00 7.14 0.00 7.41 11.76 4.65 5.88 6.67 13.33 7.14 5.26 6.56 6.78 16.00 3.23 10.53 6.00 13.04 16.00 8.70 6.06 3.70 12.90 10.81 9.52 8.33 12.00 0.00 15.38 17.65 6.67 K intron_retention wech,I_chr2R_3373673_3377324,I_chr2R_3376705_3376837 chr2R - chr2R_3371305_3371366 chr2R_3371304_3371305;chr2R_3371366_3371367 chr2R_3371152_3371304;chr2R_3371367_3373320 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 7.14 0.00 0.00 2.38 0.00 0.00 0.00 2.94 NA 6.25 0.00 0.00 0.00 0.00 0.00 4.17 10.00 0.00 6.90 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 7.41 0.00 NA 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 NA 0.00 NA 5.56 0.00 K intron_retention CG14184,I_chr3L_20021910_20021979 chr3L - chr3L_20021910_20021971 chr3L_20021909_20021910;chr3L_20021971_20021972 chr3L_20021810_20021909;chr3L_20021972_20022085 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 9.09 12.12 9.09 0.00 0.00 0.00 0.00 0.00 0.00 1.82 2.63 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 K jcn_only_AD foi,I_chr3L_8520658_8520733,I_chr3L_8524905_8524976 chr3L + chr3L_8518753_8523659;chr3L_8518490_8523659 chr3L_8518805_8523659 chr3L_8523660_8524249;chr3L_8518407_8518489 91.37 95.29 89.80 90.14 94.12 91.21 97.66 94.27 93.93 86.59 91.21 97.60 95.56 93.07 91.13 94.08 91.92 96.85 94.68 93.67 94.74 87.22 87.50 88.24 87.67 95.54 93.33 83.33 72.73 90.43 92.54 91.25 86.96 93.04 93.24 91.35 82.69 91.86 91.84 89.66 88.04 93.33 91.76 89.09 85.92 88.76 78.95 90.31 93.61 87.10 94.31 94.87 92.50 85.00 92.72 90.79 87.32 91.37 K alternative_donor Tango9,RI_chr3R_7800180_7800239 chr3R - chr3R_7800180_7800267 chr3R_7800180_7800239 chr3R_7800080_7800179;chr3R_7800268_7800339 0.00 5.00 0.00 0.00 0.00 0.00 0.00 2.78 2.13 NA 0.00 0.00 0.00 0.00 4.17 0.00 NA 0.00 5.56 2.86 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 6.67 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA 4.35 0.00 0.00 NA K intron_retention CG7611,I_chr3L_21518817_21520283 chr3L + chr3L_21520037_21520283 chr3L_21520036_21520037;chr3L_21520283_21520284 chr3L_21519084_21520036;chr3L_21520284_21520383 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 1.74 0.00 3.45 0.00 0.00 1.52 3.28 0.00 0.00 2.13 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA bon chr3R + chr3R_16435123_16435685 chr3R_16435123_16435661 chr3R_16434948_16435122;chr3R_16435686_16436022 12.40 16.30 6.94 13.54 6.38 6.78 13.16 8.33 14.84 29.09 14.08 9.65 56.36 14.58 12.16 14.86 9.09 10.00 18.39 11.54 3.12 30.43 18.18 22.37 7.02 14.06 9.82 17.86 19.64 10.00 10.14 5.13 10.84 18.28 10.34 12.00 18.97 15.00 12.31 15.22 11.43 11.49 16.98 15.87 10.77 6.56 16.00 18.82 13.19 9.62 12.40 13.64 9.84 10.91 10.13 9.68 16.07 13.33 K jcn_only_AA CG15347,I_chrX_8353371_8353552,I_chrX_8353371_8354203,I_chrX_8353497_8353552 chrX - chrX_8353371_8354798 chrX_8353416_8354798 chrX_8354799_8354949;chrX_8353271_8353370 7.20 5.71 4.82 7.77 5.53 4.69 25.15 6.94 7.45 4.64 2.87 8.33 9.79 8.48 6.82 4.84 11.70 6.36 7.80 7.88 7.73 10.93 5.99 7.52 7.27 11.20 6.62 5.75 9.01 4.47 7.20 8.42 9.43 5.21 7.26 19.67 6.29 5.17 4.55 7.99 15.52 7.22 8.19 6.79 8.25 6.51 5.02 3.08 7.60 7.59 6.09 7.69 4.75 6.04 6.62 6.41 6.74 11.16 K jcn_only_AA CAP-D2,E_chr3R_25501928_25504637 chr3R + chr3R_25501579_25501620;chr3R_25501579_25501655 chr3R_25501579_25501909 chr3R_25501398_25501578;chr3R_25501910_25501927 0.00 0.00 0.00 1.37 0.00 0.00 2.50 1.28 0.00 NA 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 1.28 4.00 NA 6.45 0.00 0.00 0.00 0.00 0.00 4.17 0.00 9.09 NA 2.13 1.69 0.00 0.00 4.35 0.00 0.00 5.13 4.55 0.00 2.56 NA NA 0.00 0.00 0.00 0.00 NA 5.00 NA NA NA 0.00 NA NA NA K intron_retention CG6750,I_chr2L_10732122_10732185 chr2L - chr2L_10732126_10732185 chr2L_10732125_10732126;chr2L_10732185_10732186 chr2L_10731383_10732125;chr2L_10732186_10732285 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 1.96 1.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11537,I_chr3L_3133339_3133648,RI_chr3L_3133339_3133976,I_chr3L_3133339_3134058,I_chr3L_3133339_3139807,I_chr3L_3133339_3142827,I_chr3L_3133419_3133948 chr3L - chr3L_3131205_3142827 chr3L_3131204_3131205;chr3L_3142827_3142828 chr3L_3131109_3131204;chr3L_3142828_3142927 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1399,I_chr2R_3574133_3574191 chr2R - chr2R_3568505_3568812 chr2R_3568504_3568505;chr2R_3568812_3568813 chr2R_3568430_3568504;chr2R_3568813_3568975 0.00 0.00 0.00 3.92 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention key,I_chr2R_20674247_20674291,I_chr2R_20674567_20674813,I_chr2R_20674654_20674897,RI_chr2R_20676692_20676888 chr2R - chr2R_20673619_20673761 chr2R_20673618_20673619;chr2R_20673761_20673762 chr2R_20673265_20673618;chr2R_20673762_20674066 1.43 2.24 0.00 2.44 1.98 1.92 1.94 2.37 2.65 0.00 1.02 2.15 1.45 1.57 1.43 1.58 0.00 0.00 1.24 2.27 0.00 1.95 3.55 1.45 0.00 0.82 1.54 5.13 0.00 0.81 0.66 0.00 0.86 2.06 0.00 0.00 2.19 0.00 1.71 0.00 1.13 1.49 3.12 0.67 0.00 1.88 0.00 2.04 2.14 3.18 0.59 1.71 0.00 1.53 0.00 0.00 1.16 0.24 K alternative_acceptor enc chr3L + chr3L_3839524_3839632 chr3L_3839524_3839605 chr3L_3839424_3839523;chr3L_3839633_3840770 0.00 0.00 0.00 2.38 2.70 0.00 2.56 0.00 0.00 4.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 1.82 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10343 chr2L + chr2L_18703838_18703909 chr2L_18703837_18703838;chr2L_18703909_18703910 chr2L_18703728_18703837;chr2L_18703910_18705873 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 K intron_retention RpL30,I_chr2L_19008540_19008948,REI_chr2L_19008544_19008723,I_chr2L_19008544_19008918,snoRNA:Me28S-A2113 chr2L - chr2L_19008544_19008918 chr2L_19008543_19008544;chr2L_19008918_19008919 chr2L_19008444_19008543;chr2L_19008919_19009018 96.00 100.00 100.00 97.22 100.00 100.00 96.30 96.97 98.28 94.44 95.65 96.15 95.83 100.00 95.83 100.00 100.00 95.45 100.00 98.04 88.46 95.65 95.24 89.19 100.00 91.30 97.22 92.11 80.00 96.00 94.35 95.83 97.22 97.50 96.00 96.15 90.70 90.91 94.59 87.50 96.77 96.43 100.00 89.66 97.14 97.06 90.62 96.30 93.22 91.30 91.49 95.83 92.00 94.87 96.88 92.50 95.65 98.48 K jcn_only_AA Galpha49B,I_chr2R_8501587_8501648,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8500390_8501648;chr2R_8500390_8501071 chr2R_8500390_8501759 chr2R_8500380_8500389;chr2R_8501760_8501850 6.92 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 3.85 NA NA NA NA NA NA 15.00 NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Uev1A,I_chr3L_5358186_5358359,I_chr3L_5358186_5358415,CREI_chr3L_5358186_5358453,I_chr3L_5358186_5359072,RI_chr3L_5358186_5359074,I_chr3L_5360875_5360954 chr3L - chr3L_5358186_5359228 chr3L_5358186_5358453 chr3L_5358086_5358185;chr3L_5359229_5359418 0.76 0.00 0.00 0.36 0.53 0.79 0.60 0.17 0.16 0.52 0.65 1.12 0.00 0.29 0.61 0.22 0.23 0.25 1.22 0.39 0.00 2.27 1.06 0.41 0.00 1.28 0.00 2.34 2.13 2.06 1.38 2.41 1.31 1.11 1.79 4.17 0.79 0.39 0.95 0.76 2.90 0.32 0.63 0.53 1.32 3.37 2.08 4.00 1.43 2.63 3.06 1.77 0.00 2.00 0.18 0.60 0.91 0.41 K intron_retention crm,Syx4,I_chrX_2635555_2635621,I_chrX_2636831_2636971 chrX - chrX_2632523_2632700 chrX_2632522_2632523;chrX_2632700_2632701 chrX_2632515_2632522;chrX_2632701_2632782 5.26 NA NA NA NA NA NA NA 9.09 7.69 NA NA NA NA NA NA NA NA NA NA NA 18.52 7.69 0.00 NA NA 5.26 0.00 28.57 0.00 NA NA NA NA NA 0.00 0.00 NA 0.00 6.98 NA 8.70 NA 16.67 NA NA NA 8.33 0.00 0.00 0.00 0.00 NA NA NA NA NA 6.67 K intron_retention CG5021 chr3L + chr3L_8960836_8960894 chr3L_8960835_8960836;chr3L_8960894_8960895 chr3L_8960683_8960835;chr3L_8960895_8961268 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.32 100.00 100.00 K jcn_only_AD CG12206,I_chrX_3367405_3367523 chrX - chrX_3367405_3368410 chrX_3367405_3368173 chrX_3367305_3367404;chrX_3368411_3368553 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA 98.48 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 NA NA 100.00 100.00 NA 98.15 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 K intron_retention CG11063 chrX - chrX_13720986_13721075 chrX_13720985_13720986;chrX_13721075_13721076 chrX_13720820_13720985;chrX_13721076_13721138 1.15 0.00 0.00 4.08 1.03 3.03 1.00 0.00 0.98 0.00 1.67 2.40 0.00 1.41 2.70 2.44 0.00 0.00 0.00 2.29 0.00 3.31 1.32 1.85 1.19 1.75 4.44 7.32 0.69 0.00 0.00 0.00 1.61 1.75 0.00 0.00 0.37 1.28 0.00 2.86 0.00 2.17 0.00 3.28 0.00 1.42 1.49 0.00 1.67 1.49 0.69 1.94 2.11 1.48 1.15 0.00 0.48 0.00 K intron_retention CG13784,I_chr2L_7209439_7209522,I_chr2L_7219131_7219918 chr2L - chr2L_7209463_7209522 chr2L_7209462_7209463;chr2L_7209522_7209523 chr2L_7209373_7209462;chr2L_7209523_7209622 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 2.04 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG9205,RI_chr3L_1035462_1035545 chr3L + chr3L_1035462_1035559 chr3L_1035462_1035545 chr3L_1035393_1035461;chr3L_1035560_1035628 0.00 0.00 0.43 0.35 0.00 0.43 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.55 0.00 0.00 0.40 0.00 0.00 0.00 1.19 0.00 0.00 0.34 0.00 0.00 0.23 0.42 0.00 0.31 0.00 0.00 0.00 0.48 0.39 0.40 0.00 0.00 0.65 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.43 K intron_retention Rab35,noncoding_24897 chrX - chrX_20052303_20052928 chrX_20052302_20052303;chrX_20052928_20052929 chrX_20052003_20052302;chrX_20052929_20053057 3.03 3.03 3.51 2.86 1.23 1.80 6.98 4.79 3.65 2.38 3.66 3.53 5.88 7.53 5.36 1.63 5.26 3.49 6.80 4.02 2.97 6.72 2.67 2.23 3.17 0.81 1.94 3.33 1.02 4.65 3.57 1.85 5.48 2.91 2.65 1.71 3.47 4.20 2.25 1.95 3.33 3.81 1.98 2.88 2.19 0.66 4.72 4.46 3.20 3.60 2.31 0.00 2.38 3.03 5.17 0.00 1.67 3.01 N intron_retention Dscam,F_chr2R_3219886_3225754,I_chr2R_3219886_3226532,FI_chr2R_3219886_3227659,F_chr2R_3219886_3228449,F_chr2R_3219886_3228832,F_chr2R_3226043_3235353,F_chr2R_3227948_3235353,F_chr2R_3228738_3235353,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3219886_3235353 chr2R_3219885_3219886;chr2R_3235353_3235354 chr2R_3219786_3219885;chr2R_3235354_3235453 33.33 NA 41.67 25.00 NA NA 33.33 35.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA 9.09 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 57.89 NA 20.00 NA NA NA NA NA NA NA K alternative_acceptor dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21308939_21309938 chr2L_21309092_21309938 chr2L_21309939_21309974;chr2L_21308288_21308938 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 94.12 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA NA 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 NA K intron_retention lbm chr2R + chr2R_2937609_2938567 chr2R_2937608_2937609;chr2R_2938567_2938568 chr2R_2937539_2937608;chr2R_2938568_2938726 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 4.65 NA 0.00 3.92 0.00 0.00 0.00 0.00 0.00 2.70 0.00 2.94 0.00 1.92 4.44 0.00 0.00 3.23 4.76 0.00 0.00 0.00 0.00 6.25 0.00 1.64 0.00 0.00 0.00 0.00 0.00 3.33 4.35 2.17 0.00 0.00 0.00 5.26 0.00 0.00 1.20 6.12 1.79 0.00 7.14 0.00 0.00 0.00 0.00 0.00 K intron_retention tai,I_chr2L_9191814_9206231 chr2L + chr2L_9241550_9241605 chr2L_9241549_9241550;chr2L_9241605_9241606 chr2L_9241376_9241549;chr2L_9241606_9242929 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.16 2.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 K multi_cassette Ect4,I_chr3L_8075556_8086158,C_chr3L_8091754_8101552,I_chr3L_8091826_8092243,I_chr3L_8098397_8101385,I_chr3L_8098758_8101738,I_chr3L_8100030_8101385 chr3L + chr3L_8098397_8101385 chr3L_8098397_8098539;chr3L_8098758_8099115;chr3L_8100030_8101385 chr3L_8098540_8098757;chr3L_8099116_8100029 chr3L_8098297_8098396;chr3L_8101386_8101485 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 97.37 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.53 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 95.45 100.00 100.00 100.00 K intron_retention Pten,I_chr2L_10256507_10256803,F_chr2L_10259663_10260253 chr2L - chr2L_10260585_10260853 chr2L_10260584_10260585;chr2L_10260853_10260854 chr2L_10260254_10260584;chr2L_10260854_10260860 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA 95.65 100.00 100.00 100.00 100.00 NA 100.00 100.00 95.45 NA 88.89 100.00 88.89 100.00 NA 100.00 NA NA 88.89 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 95.65 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K intron_retention CG3689,I_chr3L_9405436_9406302 chr3L + chr3L_9405083_9405254 chr3L_9405082_9405083;chr3L_9405254_9405255 chr3L_9404917_9405082;chr3L_9405255_9405315 22.48 14.29 26.67 21.05 41.67 NA 25.00 31.82 21.74 NA NA 42.31 18.75 41.67 25.00 29.41 15.38 12.50 53.33 25.00 29.41 NA 20.00 13.04 14.29 25.00 29.17 35.00 NA 9.09 23.81 28.57 11.76 30.00 13.33 12.50 28.57 25.00 36.36 11.36 0.00 33.33 43.75 22.22 13.64 16.67 25.00 13.79 35.29 11.76 33.33 13.33 16.00 10.00 22.22 22.73 14.29 15.15 K intron_retention CG31922,RI_chr2L_1170364_1170429 chr2L + chr2L_1170554_1170610 chr2L_1170553_1170554;chr2L_1170610_1170611 chr2L_1170430_1170553;chr2L_1170611_1170892 0.00 NA NA 6.67 NA NA 0.00 0.00 NA NA NA 6.67 NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA NA 0.00 NA 0.00 0.00 NA K alternative_acceptor MRP,I_chr2L_12724912_12725088,F_chr2L_12727117_12736035 chr2L + chr2L_12724912_12725711 chr2L_12724912_12725088 chr2L_12724812_12724911;chr2L_12725712_12725796 3.79 2.86 4.22 9.09 2.03 3.70 3.47 6.06 3.79 2.75 3.60 5.84 3.98 6.37 3.59 5.07 4.02 3.68 4.57 2.92 2.44 3.40 4.37 2.73 5.03 0.71 4.11 4.85 3.85 6.08 3.29 3.70 7.07 4.34 3.90 10.10 1.97 1.50 3.05 6.32 4.84 3.95 5.19 3.06 1.45 2.29 2.34 13.56 4.08 2.40 3.64 4.37 4.72 1.06 3.49 2.36 2.77 9.86 K intron_retention Xrp1,I_chr3R_14750298_14750799 chr3R + chr3R_14751519_14751626 chr3R_14751518_14751519;chr3R_14751626_14751627 chr3R_14750800_14751518;chr3R_14751627_14752523 0.76 0.78 0.61 0.82 0.20 0.44 1.05 1.36 0.90 0.98 0.29 0.55 1.05 1.47 0.63 1.18 0.00 0.35 0.91 0.39 0.31 0.75 0.87 0.86 0.66 0.43 1.29 2.37 0.97 0.84 0.30 0.81 0.53 0.45 1.67 0.78 0.92 0.45 0.69 0.76 0.60 0.58 0.92 0.76 0.34 1.10 1.05 0.45 1.05 0.67 0.95 0.92 0.67 0.39 0.59 0.97 1.22 0.62 K intron_retention CG7029 chr3R + chr3R_18614491_18615247 chr3R_18614490_18614491;chr3R_18615247_18615248 chr3R_18614301_18614490;chr3R_18615248_18617722 60.00 50.00 69.57 85.00 88.89 55.00 61.90 59.09 75.00 NA 69.23 60.71 NA 60.00 69.23 70.00 NA 75.00 75.00 68.57 90.00 55.56 51.85 50.00 66.67 80.00 71.43 NA 50.00 72.22 60.00 38.46 83.33 64.00 71.43 69.57 35.71 53.85 57.14 47.37 60.00 66.67 NA 36.36 45.00 56.25 53.33 52.00 76.47 NA 52.00 NA 44.44 NA 61.11 58.33 38.89 50.00 K intron_retention CG7546 chr3L + chr3L_7506493_7506917 chr3L_7506492_7506493;chr3L_7506917_7506918 chr3L_7505886_7506492;chr3L_7506918_7507454 1.96 0.00 1.61 3.45 0.00 0.00 2.35 1.52 0.86 0.00 0.00 6.67 1.96 2.17 0.00 1.45 0.00 2.00 0.00 1.43 0.00 6.67 3.80 2.78 2.78 0.00 2.53 0.00 5.13 0.00 6.82 0.00 7.41 0.00 2.78 5.71 2.13 0.00 3.37 3.17 0.00 5.38 3.33 0.00 0.00 3.39 2.17 5.00 2.56 0.00 2.70 3.45 0.00 0.00 3.23 2.56 1.96 0.00 K intron_retention Gprk2 chr3R + chr3R_27280223_27280296 chr3R_27280222_27280223;chr3R_27280296_27280297 chr3R_27280117_27280222;chr3R_27280297_27280486 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 7.14 3.23 0.00 20.31 0.00 0.00 6.25 0.00 4.35 0.00 12.20 0.00 3.85 0.00 4.92 0.00 0.00 0.00 2.38 3.23 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention Nipped-B,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_615240_615298 chr2R_615239_615240;chr2R_615298_615299 chr2R_615180_615239;chr2R_615299_615458 13.05 7.14 16.67 20.51 NA 16.67 12.35 12.77 22.97 NA 12.50 19.35 12.00 12.00 11.11 26.53 10.00 18.75 16.67 16.67 NA 33.33 4.17 NA 12.50 23.53 10.53 9.09 63.64 14.29 12.50 NA NA 13.51 11.76 14.29 NA NA NA 0.00 NA 13.33 0.00 0.00 NA NA NA NA 15.56 NA 0.00 13.64 NA NA NA NA NA NA K jcn_only_AD CG14642,CG34305 chr3R - chr3R_67810_67896 chr3R_67810_67879 chr3R_67700_67809;chr3R_67897_67958 88.12 95.35 95.24 NA NA NA NA 90.91 90.62 NA NA 75.86 NA NA 80.95 NA NA 85.71 NA 94.34 NA 100.00 91.53 81.48 97.30 NA 85.71 NA 92.00 93.55 87.79 97.06 93.55 87.50 100.00 NA 86.21 94.74 83.58 100.00 72.73 82.61 NA 88.24 86.67 87.50 87.50 97.06 92.11 81.97 86.27 86.96 86.36 88.00 NA 78.57 93.55 100.00 K jcn_only_AA RhoGAP68F,RI_chr3L_12133229_12134100 chr3L + chr3L_12133229_12134100;chr3L_12133229_12134239 chr3L_12133229_12134351 chr3L_12133129_12133228 97.06 96.30 100.00 100.00 100.00 100.00 90.67 96.39 97.14 100.00 98.36 94.68 96.15 96.49 100.00 100.00 100.00 95.83 100.00 98.44 98.18 76.79 98.78 88.24 88.24 95.24 93.67 100.00 95.08 97.85 97.06 94.29 98.20 93.67 94.87 81.13 99.03 94.34 97.67 97.50 96.15 96.49 97.83 98.33 93.83 96.36 93.10 95.54 96.74 100.00 95.52 96.88 96.43 100.00 98.00 100.00 97.87 98.53 K intron_retention Nedd4,I_chr3L_17535485_17536604,I_chr3L_17536186_17536604,I_chr3L_17536813_17536863 chr3L + chr3L_17536186_17536604 chr3L_17536185_17536186;chr3L_17536604_17536605 chr3L_17536086_17536185;chr3L_17536605_17536704 42.11 NA NA NA NA NA 81.82 NA NA NA NA NA NA NA NA NA NA NA NA 42.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Rbf chrX - chrX_693047_693348 chrX_693047_693123 chrX_692311_693046;chrX_693349_693680 1.41 0.00 0.00 0.00 0.00 0.00 3.92 2.00 2.53 12.50 NA 1.67 4.17 3.45 2.78 0.00 0.00 0.00 6.45 3.51 NA 11.48 2.33 1.61 2.63 0.00 0.00 NA 0.00 4.17 0.00 2.94 0.00 5.13 0.00 0.00 0.00 0.00 1.33 3.51 NA 3.08 0.00 0.00 0.00 2.86 6.25 NA 0.00 1.49 4.29 0.00 7.69 0.00 0.00 4.55 0.00 6.25 K cassette sdt,C_chrX_8118081_8119117,I_chrX_8131684_8131842 chrX + chrX_8098337_8104435 chrX_8098337_8102829;chrX_8104072_8104435 chrX_8102830_8104071 chrX_8098206_8098336;chrX_8104436_8104713 20.93 20.93 21.43 52.78 22.73 17.24 31.25 20.00 25.86 15.00 23.81 20.41 29.41 21.05 30.43 11.54 20.00 25.00 18.52 47.44 30.77 11.90 15.00 17.39 16.67 11.54 15.15 20.00 14.81 11.76 20.00 25.00 26.32 27.78 12.50 21.21 21.33 14.58 18.75 16.67 25.00 24.44 23.53 18.75 57.14 20.83 29.63 20.00 28.21 22.22 14.29 13.79 29.41 25.93 12.50 12.50 28.57 30.00 K intron_retention PR2,I_chr2R_9032197_9036175,CG33007 chr2R - chr2R_9032194_9036175 chr2R_9032193_9032194;chr2R_9036175_9036176 chr2R_9032097_9032193;chr2R_9036176_9036275 0.00 0.00 0.00 13.16 0.00 2.56 8.33 3.92 0.00 0.00 0.00 1.28 0.00 0.00 0.00 5.00 0.00 0.00 3.03 2.90 0.00 0.00 0.00 0.00 0.00 2.33 5.71 5.00 0.00 6.06 5.88 0.00 2.44 6.90 0.00 0.00 0.00 0.00 0.00 2.70 0.00 2.60 0.00 2.56 0.00 0.00 0.00 4.62 3.41 6.45 4.08 0.00 2.27 3.23 7.32 4.17 0.00 3.28 K intron_retention CG3558,RI_chr2L_2995071_2997790 chr2L + chr2L_2997060_2997491 chr2L_2997059_2997060;chr2L_2997491_2997492 chr2L_2996502_2997059;chr2L_2997492_2997530 9.60 12.12 7.41 9.68 0.00 13.33 20.00 16.67 14.58 6.90 NA 22.22 0.00 11.11 23.53 36.84 0.00 9.52 20.00 10.64 NA 3.28 10.81 5.00 6.25 NA 8.89 2.13 NA 5.13 10.53 0.00 6.90 13.79 15.79 10.53 3.23 6.25 8.00 20.00 0.00 20.00 16.67 5.71 6.67 12.50 4.55 0.00 9.68 3.03 8.33 11.11 NA 9.09 11.76 5.41 15.00 15.00 K cassette CG10103,noncoding_10997 chr3L - chr3L_6747908_6748519;chr3L_6747594_6748519 chr3L_6747594_6748172,chr3L_6747908_6748172;chr3L_6748224_6748519 chr3L_6748173_6748223 chr3L_6747493_6747593;chr3L_6748520_6749258 34.29 34.48 39.00 24.67 29.27 30.21 22.88 30.23 33.11 66.00 40.00 50.00 24.62 23.53 35.90 39.02 42.42 44.44 35.96 33.33 38.82 40.82 38.54 38.75 38.57 27.17 31.82 50.00 13.16 34.29 27.52 36.00 39.20 35.94 29.67 20.34 33.94 37.88 34.78 31.63 30.86 32.95 27.85 45.00 31.44 33.03 42.55 34.33 29.75 38.85 33.33 44.68 28.00 34.04 37.27 30.43 34.38 28.12 K jcn_only_AD CG3774,I_chrX_6114220_6114292 chrX + chrX_6114220_6115412 chrX_6114451_6115412 chrX_6115413_6116709;chrX_6114120_6114219 96.55 86.36 88.57 97.78 100.00 NA 92.11 97.62 95.74 NA 95.00 100.00 NA 100.00 96.00 95.00 NA NA 91.67 93.48 95.83 100.00 96.97 95.83 NA 91.67 NA 95.45 NA NA 91.67 NA NA 94.44 100.00 100.00 NA 95.00 100.00 100.00 NA 97.92 100.00 100.00 90.00 93.75 95.45 NA 98.00 NA 100.00 100.00 100.00 100.00 100.00 96.55 NA 80.00 K jcn_only_AD lig,CI_chr2R_3962006_3962916,I_chr2R_3962357_3962977,RI_chr2R_3962875_3962977 chr2R + chr2R_3961577_3962977;chr2R_3961910_3962977 chr2R_3962006_3962977 chr2R_3962978_3963016;chr2R_3961479_3961576 97.83 96.71 98.72 96.74 96.10 97.65 98.49 98.74 96.75 96.08 98.09 95.91 97.27 97.13 97.44 99.21 99.28 98.99 99.05 99.57 96.77 96.77 97.41 96.80 97.29 98.73 94.67 79.89 91.79 96.74 99.00 96.77 99.22 98.05 98.88 95.92 97.95 97.53 98.41 96.89 97.20 98.57 99.03 98.59 97.22 98.58 99.17 97.66 98.57 99.48 98.20 98.95 97.52 98.80 97.87 97.77 97.83 98.73 K intron_retention CG30085,I_chr2R_11756325_11756380 chr2R - chr2R_11753782_11753842 chr2R_11753781_11753782;chr2R_11753842_11753843 chr2R_11753495_11753781;chr2R_11753843_11756324 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 4.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.47 12.50 16.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 2.13 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.52 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention rin,I_chr3R_9476825_9476895 chr3R + chr3R_9473269_9474639 chr3R_9473268_9473269;chr3R_9474639_9474640 chr3R_9473144_9473268;chr3R_9474640_9476216 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 1.27 0.56 1.85 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.61 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr2L_4834257_4835246,CG15626,I_chr2L_4837780_4837844 chr2L - chr2L_4837158_4837234 chr2L_4837157_4837158;chr2L_4837234_4837235 chr2L_4836483_4837157;chr2L_4837235_4837533 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA RI_chr2R_12912984_12913058,RhoGEF2 chr2R + chr2R_12922514_12923162;chr2R_12922514_12923159 chr2R_12922514_12922850 chr2R_12922340_12922513;chr2R_12923163_12923912 100.00 100.00 96.55 100.00 100.00 80.65 95.92 100.00 100.00 96.43 NA 98.31 100.00 96.67 100.00 100.00 97.56 100.00 96.30 96.00 NA 98.88 100.00 96.00 100.00 100.00 95.12 100.00 100.00 100.00 100.00 NA 98.63 98.48 100.00 97.56 97.67 100.00 100.00 95.92 100.00 98.65 100.00 100.00 95.24 100.00 95.00 98.84 100.00 100.00 96.67 95.45 100.00 NA 100.00 NA 100.00 95.12 K alternative_donor nudE chr3L + chr3L_9892456_9892825;chr3L_9892375_9892825 chr3L_9892498_9892825 chr3L_9892826_9893184;chr3L_9892344_9892374 0.00 0.00 0.00 0.00 NA NA 6.25 0.00 0.00 NA NA 8.33 11.11 0.00 NA 4.00 0.00 0.00 11.11 10.53 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 5.88 NA NA NA NA NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 5.88 NA 0.00 NA NA NA 0.00 NA NA NA K intron_retention CG34437,noncoding_19678 chr3R + chr3R_24109769_24109829 chr3R_24109768_24109769;chr3R_24109829_24109830 chr3R_24109723_24109768;chr3R_24109830_24110971 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 NA 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA K intron_retention l(1)G0269,I_chrX_21192541_21192931 chrX - chrX_21193190_21194157 chrX_21193189_21193190;chrX_21194157_21194158 chrX_21193182_21193189;chrX_21194158_21194468 3.34 5.26 0.00 6.94 0.00 0.00 3.45 3.30 3.42 0.00 5.41 10.23 3.39 0.00 0.00 6.58 5.00 0.00 0.00 3.88 1.89 20.00 3.92 8.00 0.00 7.50 4.44 21.05 0.00 6.67 3.51 0.00 12.50 2.02 0.00 0.00 0.00 6.25 5.71 4.88 6.25 4.13 5.77 0.00 6.45 0.00 0.00 2.63 1.75 0.00 6.25 0.00 0.00 NA 2.82 8.33 0.00 0.00 K intron_retention S chr2L - chr2L_1052496_1052565 chr2L_1052495_1052496;chr2L_1052565_1052566 chr2L_1052331_1052495;chr2L_1052566_1053053 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG8726 chr2R - chr2R_3859035_3859141 chr2R_3859070_3859141 chr2R_3859142_3859511;chr2R_3858749_3859034 5.00 3.45 2.94 6.67 6.90 3.23 6.90 0.00 4.92 4.35 4.17 1.54 0.00 0.00 8.82 6.67 3.70 0.00 10.00 1.82 3.45 21.74 5.19 5.56 10.00 0.00 2.56 2.08 7.69 8.16 6.67 0.00 9.80 6.98 3.23 6.25 6.94 4.65 4.00 5.63 19.05 4.29 6.67 10.42 14.29 3.45 6.67 9.09 5.17 4.35 6.82 3.33 4.76 8.70 2.70 3.33 5.00 7.69 K intron_retention brp chr2R + chr2R_5423074_5423345 chr2R_5423073_5423074;chr2R_5423345_5423346 chr2R_5421307_5423073;chr2R_5423346_5423597 0.00 NA NA NA NA NA NA NA 7.14 NA NA NA NA NA NA NA NA NA NA NA NA 1.69 14.29 0.00 NA NA NA 0.00 7.41 7.14 NA 0.00 0.00 NA NA 0.00 0.00 6.67 5.56 0.00 NA NA NA 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA NA 0.00 0.00 K jcn_only_AA CG17665 chr2R - chr2R_125229_125523 chr2R_125253_125523 chr2R_125524_125714;chr2R_125223_125228 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 3.28 NA NA 0.00 3.85 0.00 3.70 0.00 NA 0.00 4.35 0.00 0.00 NA 0.00 3.33 0.00 NA NA NA 0.00 0.00 0.00 2.63 2.78 0.00 0.00 0.00 1.82 2.25 NA 0.00 NA NA NA 0.00 0.00 0.00 2.63 K intron_retention MRP,F_chr2L_12727117_12736035 chr2L + chr2L_12737619_12737958 chr2L_12737618_12737619;chr2L_12737958_12737959 chr2L_12737550_12737618;chr2L_12737959_12738176 28.76 26.67 26.83 56.25 26.09 16.67 21.82 31.37 31.67 NA 36.36 38.46 55.00 29.03 33.33 21.43 19.05 14.29 41.67 35.21 39.13 80.00 31.94 23.08 40.91 28.57 29.82 30.77 27.78 32.14 22.22 17.65 26.47 30.77 29.41 52.38 22.22 19.23 27.91 31.58 28.00 22.00 26.67 21.54 24.00 25.93 30.00 33.33 34.00 18.75 30.51 42.86 25.93 30.00 28.95 22.73 16.33 21.05 K alternative_donor Gli chr2L - chr2L_15760575_15762688 chr2L_15760575_15762568 chr2L_15760402_15760574;chr2L_15762689_15762723 55.05 NA NA NA NA NA NA NA 50.00 47.06 NA 58.33 NA NA NA 60.00 NA NA NA 57.14 NA 56.25 50.00 54.55 57.14 NA NA 77.78 56.52 55.56 85.71 NA 39.13 36.36 44.44 70.00 NA NA NA 56.25 35.29 52.63 NA 50.00 66.67 58.82 NA 50.00 45.45 NA 54.55 40.00 NA NA NA NA NA 60.00 K intron_retention CG10469,CG10467 chr3L - chr3L_6086922_6086981 chr3L_6086921_6086922;chr3L_6086981_6086982 chr3L_6086304_6086921;chr3L_6086982_6087514 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 98.57 100.00 100.00 100.00 100.00 97.50 100.00 98.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 97.06 100.00 100.00 98.04 97.73 100.00 100.00 K alternative_donor CG5381,I_chr2L_10319077_10319133,RI_chr2L_10320054_10321505 chr2L - chr2L_10319077_10319133 chr2L_10319077_10319130 chr2L_10319011_10319076;chr2L_10319134_10319195 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 95.24 NA 100.00 100.00 NA 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 NA NA NA NA NA 90.00 90.00 NA 95.24 100.00 90.00 87.50 NA NA NA 93.33 88.89 100.00 NA 100.00 100.00 NA NA 91.67 100.00 NA NA NA NA NA 100.00 85.71 100.00 95.45 K intron_retention bbc,REI_chr2R_9379401_9381986 chr2R - chr2R_9378377_9378939 chr2R_9378376_9378377;chr2R_9378939_9378940 chr2R_9378245_9378376;chr2R_9378940_9379098 21.54 18.23 28.24 36.73 20.61 20.63 28.86 29.87 20.39 9.88 28.47 21.54 35.90 24.32 27.95 42.42 33.06 34.34 38.03 28.15 31.75 30.00 23.59 17.13 25.00 26.72 19.53 19.89 22.34 19.88 20.62 13.08 29.91 29.80 25.42 33.88 15.21 18.40 17.15 14.74 11.56 22.69 25.77 9.67 8.67 12.69 10.75 21.82 24.22 11.43 17.74 20.86 11.56 9.93 28.14 13.14 9.50 12.18 K jcn_only_AA gw,I_chr4_678308_678527,I_chr4_679135_681671 chr4 - chr4_678308_678527 chr4_678311_678527 chr4_678528_678627;chr4_678208_678307 100.00 98.76 99.54 99.39 100.00 100.00 99.35 100.00 99.80 100.00 100.00 100.00 100.00 99.54 100.00 100.00 99.50 99.35 100.00 99.63 100.00 99.76 99.69 100.00 100.00 100.00 99.62 100.00 100.00 99.80 99.54 99.34 99.60 100.00 99.58 99.78 99.44 100.00 100.00 99.79 99.46 99.74 100.00 99.69 99.57 100.00 99.24 99.84 99.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.64 K jcn_only_AA CG8331,I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,I_chr2R_10064197_10068715,I_chr2R_10068194_10068715 chr2R + chr2R_10060189_10060261 chr2R_10060189_10060251 chr2R_10060120_10060188;chr2R_10060262_10060327 100.00 99.73 100.00 100.00 100.00 100.00 99.63 100.00 100.00 100.00 100.00 99.87 100.00 100.00 100.00 99.57 100.00 100.00 100.00 100.00 100.00 99.65 100.00 100.00 99.64 99.79 100.00 99.36 100.00 100.00 99.82 100.00 100.00 99.84 100.00 100.00 99.59 99.67 100.00 100.00 100.00 99.86 99.70 100.00 100.00 100.00 100.00 99.26 99.88 99.54 99.77 100.00 100.00 99.40 100.00 99.80 99.76 99.53 K cassette Ten-m,EI_chr3L_22298865_22299141,I_chr3L_22374182_22399991 chr3L - chr3L_22297630_22300646 chr3L_22297630_22298066;chr3L_22298865_22300646 chr3L_22298067_22298864 chr3L_22297346_22297629;chr3L_22300647_22300652 72.08 63.16 68.75 65.22 71.43 57.89 75.00 74.29 70.37 50.00 73.33 81.08 92.31 72.73 62.96 82.14 78.95 69.23 80.00 75.00 68.75 42.86 74.07 70.59 84.62 63.16 64.00 40.00 75.00 48.39 78.95 66.67 54.84 75.00 73.33 73.08 68.75 53.33 65.22 62.50 66.67 76.92 84.62 60.87 100.00 80.00 80.00 66.67 73.81 100.00 73.33 77.78 66.67 NA 60.00 66.67 80.00 83.33 K intron_retention CG8176,I_chr3R_5348614_5348964 chr3R + chr3R_5348614_5349923 chr3R_5348613_5348614;chr3R_5349923_5349924 chr3R_5348514_5348613;chr3R_5349924_5350029 2.48 1.37 2.70 2.48 0.00 3.39 1.54 2.05 1.84 0.00 2.99 2.58 2.25 2.50 2.11 3.48 2.86 0.00 3.81 4.43 2.41 8.51 2.22 1.92 6.12 0.00 2.74 5.88 0.00 2.78 1.09 0.00 2.56 1.82 0.00 5.06 1.64 2.08 4.55 8.26 0.00 1.95 1.28 2.90 0.00 4.08 2.27 5.00 2.48 0.00 3.12 4.08 3.51 0.00 2.80 0.00 2.94 2.70 K intron_retention Vha26 chr3R + chr3R_1418908_1418968 chr3R_1418907_1418908;chr3R_1418968_1418969 chr3R_1418581_1418907;chr3R_1418969_1420455 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.29 0.65 1.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 K intron_retention CG9947,eIF-2alpha chrX - chrX_16333320_16333629 chrX_16333319_16333320;chrX_16333629_16333630 chrX_16333264_16333319;chrX_16333630_16333795 0.70 0.38 1.46 0.37 0.28 0.71 0.88 0.58 0.85 0.00 0.00 1.05 1.14 1.07 1.08 1.37 0.40 0.39 1.21 0.78 0.46 0.64 0.57 1.25 0.62 0.64 0.86 1.24 0.49 0.72 0.70 0.88 1.30 0.81 0.32 0.68 0.20 0.66 0.89 0.98 0.32 0.95 0.80 0.42 0.29 0.78 0.32 0.75 1.15 0.67 1.35 0.00 0.43 0.37 0.79 0.58 0.38 0.74 K intron_retention grp,REI_chr2L_16696770_16697500,I_chr2L_16697644_16698961,R_chr2L_16698072_16698138 chr2L + chr2L_16696763_16697500 chr2L_16696762_16696763;chr2L_16697500_16697501 chr2L_16696670_16696762;chr2L_16697501_16697600 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.86 0.00 0.00 1.40 4.44 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.94 0.00 1.56 0.00 1.89 0.00 0.00 0.00 3.12 0.00 0.00 0.00 2.22 0.75 0.00 2.65 1.68 0.00 1.83 0.00 0.00 0.00 1.94 2.67 0.00 0.86 1.35 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention blow,RI_chr2R_3470434_3470776 chr2R - chr2R_3472863_3474487 chr2R_3472862_3472863;chr2R_3474487_3474488 chr2R_3472561_3472862;chr2R_3474488_3474581 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 77.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor gw,RI_chr4_679135_679703,I_chr4_679135_680299,RI_chr4_679135_680693,I_chr4_679135_681047,I_chr4_679135_681671 chr4 - chr4_679135_680594;chr4_679135_680546;chr4_679135_680270;chr4_679135_680503 chr4_679135_680185 chr4_679035_679134;chr4_680595_680603 54.66 66.67 40.00 66.67 0.00 66.67 70.59 52.17 71.43 NA 40.00 35.71 42.86 44.44 40.00 57.89 66.67 0.00 42.86 36.36 66.67 100.00 80.00 75.00 0.00 0.00 66.67 50.00 NA 40.00 57.14 NA 50.00 33.33 66.67 66.67 100.00 50.00 NA 71.43 NA 46.15 66.67 66.67 NA 33.33 NA 0.00 68.75 NA 66.67 100.00 NA NA 50.00 NA NA NA K alternative_donor gro chr3R + chr3R_21868657_21868716;chr3R_21868622_21868716 chr3R_21868626_21868716 chr3R_21868717_21869101;chr3R_21868588_21868621 47.49 50.00 57.14 38.46 50.00 33.33 52.94 30.00 40.00 42.86 NA 50.00 50.00 42.86 66.67 50.00 55.56 56.25 55.56 47.62 55.56 61.54 52.63 42.86 44.44 40.00 44.44 41.18 25.00 38.89 46.67 NA 54.55 36.00 57.14 43.75 47.06 41.67 47.37 52.17 NA 42.86 37.50 44.44 NA 62.50 62.50 28.57 47.62 45.45 50.00 22.22 NA 50.00 46.15 54.55 55.56 55.56 K cassette CG5741,I_chr3L_8928033_8928095 chr3L - chr3L_8927241_8927504 chr3L_8927241_8927330;chr3L_8927412_8927504 chr3L_8927331_8927411 chr3L_8926666_8927240;chr3L_8927505_8927696 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Rad51C,F_chr2R_5053491_5053575 chr2R + chr2R_5053491_5053549 chr2R_5053490_5053491;chr2R_5053549_5053550 chr2R_5053391_5053490;chr2R_5053550_5054064 38.12 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 70.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention coro,I_chr2R_2752880_2760038,I_chr2R_2753390_2754191,I_chr2R_2754447_2754986,I_chr2R_2754447_2755071 chr2R - chr2R_2752880_2754191 chr2R_2752879_2752880;chr2R_2754191_2754192 chr2R_2752780_2752879;chr2R_2754192_2754291 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 2.94 0.85 0.00 0.00 0.00 0.00 2.94 0.81 1.68 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 2.02 K alternative_donor CG31431 chr3R + chr3R_17696656_17697703;chr3R_17696730_17697703;chr3R_17696581_17697703 chr3R_17696702_17697703 chr3R_17697704_17697862;chr3R_17696406_17696580 1.59 1.28 0.91 0.62 0.00 1.16 1.80 0.46 1.35 3.03 3.41 0.56 2.04 2.94 3.25 0.65 1.23 0.86 0.85 0.40 1.20 1.89 1.20 0.00 1.96 1.96 4.49 2.17 3.64 1.85 1.92 3.23 1.27 2.50 1.89 2.27 1.79 0.00 0.00 3.06 2.47 1.83 2.33 1.15 1.54 4.17 1.59 1.52 0.99 3.77 0.98 0.00 2.56 2.50 0.78 0.00 1.54 3.00 K intron_retention CG30423 chr2R - chr2R_20762531_20762596 chr2R_20762530_20762531;chr2R_20762596_20762597 chr2R_20762510_20762530;chr2R_20762597_20762795 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.51 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.29 98.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG5027 chr3L + chr3L_16222441_16222504 chr3L_16222440_16222441;chr3L_16222504_16222505 chr3L_16222218_16222440;chr3L_16222505_16222743 0.00 NA NA 14.29 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA K intron_retention Myo61F chr3L + chr3L_1318770_1325994 chr3L_1318769_1318770;chr3L_1325994_1325995 chr3L_1318505_1318769;chr3L_1325995_1326139 2.82 0.00 1.69 2.82 0.00 3.92 4.88 3.54 2.88 4.76 0.00 2.11 6.82 3.92 2.78 4.35 4.11 4.08 1.39 4.82 2.56 2.70 0.00 0.00 0.00 0.00 5.17 0.00 24.00 0.00 0.00 0.00 0.00 6.25 5.13 5.56 0.00 0.00 5.77 3.39 0.00 3.54 2.13 0.00 5.56 5.26 0.00 9.76 4.41 6.67 1.67 2.13 0.00 4.76 0.00 5.26 4.44 6.06 K intron_retention AP-47,I_chr3R_5385123_5385196 chr3R - chr3R_5384091_5384149 chr3R_5384090_5384091;chr3R_5384149_5384150 chr3R_5383434_5384090;chr3R_5384150_5384804 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 1.28 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Crc,Scm chr3R - chr3R_5455338_5455459 chr3R_5455338_5455429 chr3R_5454930_5455337;chr3R_5455460_5455902 100.00 100.00 100.00 99.92 100.00 100.00 100.00 100.00 100.00 99.85 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.95 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.90 99.87 100.00 100.00 99.89 99.90 100.00 100.00 99.92 100.00 100.00 100.00 99.89 100.00 100.00 100.00 99.93 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.92 100.00 100.00 100.00 99.95 99.95 K intron_retention F_chr2R_18548367_18550224,R_chr2R_18548408_18548573,CG42566,I_chr2R_18551419_18551493 chr2R + chr2R_18550369_18550438 chr2R_18550368_18550369;chr2R_18550438_18550439 chr2R_18550225_18550368;chr2R_18550439_18550673 35.71 NA NA NA NA NA NA 47.06 38.46 NA NA 33.33 NA NA NA NA NA NA NA 48.28 NA NA NA NA NA NA NA NA NA NA 29.41 NA NA NA NA NA 33.33 NA NA 53.33 NA 50.00 NA NA NA 25.00 NA NA 47.06 28.57 NA NA NA 25.00 NA NA 35.71 NA K intron_retention Gel,RI_chr3R_62662_62721,RI_chr3R_62666_63346,I_chr3R_62933_63346,I_chr3R_63962_64024,I_chr3R_66533_66599 chr3R + chr3R_62662_63346 chr3R_62661_62662;chr3R_63346_63347 chr3R_62626_62661;chr3R_63347_63446 25.00 NA 14.29 35.71 NA NA 30.77 NA 25.00 NA NA 13.04 NA NA NA 21.43 NA NA NA 4.55 NA 30.00 NA NA NA NA 30.77 NA NA NA NA NA NA 25.00 NA NA NA NA NA 30.77 NA 19.05 NA NA NA NA NA NA 13.64 NA NA NA NA NA NA NA NA NA K jcn_only_AD Rab1,I_chr3R_17093463_17094644,I_chr3R_17094214_17094492,I_chr3R_17099005_17099062 chr3R - chr3R_17093463_17094644 chr3R_17093463_17094492 chr3R_17093363_17093462;chr3R_17094645_17094744 100.00 100.00 100.00 100.00 100.00 99.69 100.00 99.86 99.89 99.17 100.00 99.81 100.00 100.00 99.76 100.00 99.58 100.00 99.81 99.61 100.00 98.96 100.00 99.58 100.00 100.00 100.00 98.31 100.00 99.44 99.77 100.00 100.00 99.86 100.00 100.00 100.00 100.00 99.48 99.49 100.00 99.86 99.70 99.31 100.00 100.00 100.00 98.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.65 99.60 K intron_retention Nurf-38 chr2R - chr2R_20447088_20447145 chr2R_20447087_20447088;chr2R_20447145_20447146 chr2R_20446978_20447087;chr2R_20447146_20447297 0.00 0.79 0.00 0.00 0.00 0.00 0.00 1.32 0.41 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.99 0.00 0.00 0.00 0.00 2.44 5.30 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.85 0.60 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.31 0.00 1.22 0.00 0.66 0.00 K intron_retention CG11876,CG11877 chr3R + chr3R_24939878_24940150 chr3R_24939877_24939878;chr3R_24940150_24940151 chr3R_24939716_24939877;chr3R_24940151_24940729 0.00 0.00 0.00 1.98 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 1.94 0.00 2.14 0.00 2.44 0.62 1.26 0.00 0.00 2.04 4.12 2.90 1.28 3.51 0.00 0.75 1.04 0.00 0.00 1.16 0.00 0.00 1.68 2.08 1.25 0.00 0.00 0.00 1.57 1.28 3.57 3.25 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3L_18664773_18665233,GNBP2,I_chr3L_18667579_18667644 chr3L - chr3L_18668376_18668437 chr3L_18668375_18668376;chr3L_18668437_18668438 chr3L_18668319_18668375;chr3L_18668438_18668454 89.74 92.31 94.44 82.50 75.00 93.75 86.79 91.67 89.74 NA 69.23 87.88 94.12 100.00 92.86 96.43 87.50 92.31 88.46 72.97 77.78 80.00 92.86 85.71 100.00 94.12 100.00 NA NA 87.50 88.46 NA NA 82.35 90.00 NA 63.64 NA NA 76.47 NA 76.92 92.31 100.00 88.89 93.33 75.00 90.00 85.42 88.89 92.86 90.91 NA 77.78 89.47 91.67 90.00 91.67 K intron_retention Papss chr3L + chr3L_19838529_19838596 chr3L_19838528_19838529;chr3L_19838596_19838597 chr3L_19838397_19838528;chr3L_19838597_19838730 77.35 72.73 NA 89.47 NA NA 75.00 90.00 72.22 NA NA 71.43 NA NA 100.00 66.67 NA NA NA 75.00 NA NA 91.67 63.64 87.50 80.00 100.00 NA NA NA 77.78 NA NA 61.54 NA 100.00 NA NA 87.50 NA NA 81.25 NA NA NA 60.00 NA NA 76.92 NA 63.64 NA NA NA 81.82 NA NA 69.23 K alternative_acceptor Upf2,I_chrX_7969268_7969358,I_chrX_7969312_7969358 chrX - chrX_7969268_7969358;chrX_7969293_7969358;chrX_7969303_7969358 chrX_7969312_7969358 chrX_7969359_7969458;chrX_7969212_7969267 36.93 37.50 33.33 42.86 20.00 44.44 40.00 50.00 26.67 33.33 NA 33.33 33.33 37.50 63.64 38.46 50.00 42.86 62.50 41.67 33.33 23.08 38.46 33.33 42.86 36.36 NA 41.67 28.57 22.22 18.18 NA 42.86 33.33 40.00 50.00 25.00 40.00 37.50 30.77 NA 30.00 20.00 33.33 33.33 NA NA 33.33 25.00 37.50 22.22 NA 20.00 NA 38.46 NA 40.00 50.00 K alternative_acceptor Pcf11,RI_chr2R_10753287_10754988 chr2R - chr2R_10753272_10754988;chr2R_10753287_10754988;chr2R_10753557_10754988;chr2R_10753239_10754988 chr2R_10753581_10754988 chr2R_10754989_10755088;chr2R_10753187_10753238 0.00 0.00 0.00 4.17 0.00 0.00 9.09 4.55 5.71 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 6.45 2.78 0.00 10.00 0.00 0.00 0.00 5.00 6.67 0.00 0.00 9.52 3.33 0.00 12.50 2.44 4.17 4.00 5.88 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 12.50 0.00 0.00 0.00 NA 0.00 K intron_retention RI_chr2R_2760771_2763486,noncoding_4737 chr2R + chr2R_2763703_2763777 chr2R_2763702_2763703;chr2R_2763777_2763778 chr2R_2763667_2763702;chr2R_2763778_2763876 78.95 53.85 69.23 85.00 NA 60.00 84.00 75.86 83.72 NA 60.00 90.48 92.31 83.33 87.50 84.00 75.00 88.89 88.89 90.00 88.89 71.43 78.95 92.86 72.73 NA 71.43 60.00 45.45 80.00 44.83 85.71 76.92 74.07 80.00 63.64 72.73 NA 63.64 74.07 84.62 72.00 92.31 88.24 94.44 78.95 85.00 46.15 71.88 88.46 77.78 66.67 93.33 86.67 75.00 71.43 100.00 85.71 K intron_retention Ptpmeg,I_chr3L_353688_353782,I_chr3L_355125_355175 chr3L + chr3L_348218_351366 chr3L_348217_348218;chr3L_351366_351367 chr3L_348123_348217;chr3L_351367_351663 87.50 NA NA NA NA NA NA NA 70.00 NA NA NA NA NA NA NA NA NA NA NA NA 63.16 NA NA NA NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA 90.91 NA NA NA NA NA NA NA NA NA K intron_retention CG8078,RI_chr2R_4985642_4985695 chr2R - chr2R_4985642_4985693 chr2R_4985641_4985642;chr2R_4985693_4985694 chr2R_4985542_4985641;chr2R_4985694_4985851 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 7.14 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 NA 0.00 3.03 NA 0.00 0.00 7.14 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor wge chr3R - chr3R_18542354_18542655;chr3R_18542390_18542655 chr3R_18542387_18542655 chr3R_18542656_18542685;chr3R_18540256_18542353 25.41 19.35 25.00 35.00 21.43 NA 53.33 21.43 19.51 16.67 NA 41.94 NA 30.77 18.75 33.33 NA NA 40.00 25.81 27.27 35.71 16.28 20.00 27.27 50.00 28.00 30.00 42.86 34.38 21.43 20.83 22.78 17.39 17.86 58.62 26.00 16.13 15.91 26.23 36.00 18.92 27.27 28.12 23.53 23.53 6.67 33.33 16.67 36.36 32.14 60.00 13.04 16.67 17.65 46.67 12.00 16.22 K cassette scny,I_chr3L_5763034_5768288 chr3L + chr3L_5767177_5768288 chr3L_5767177_5767513;chr3L_5768114_5768288 chr3L_5767514_5768113 chr3L_5767039_5767176;chr3L_5768289_5768388 7.25 6.48 5.62 5.48 8.00 6.45 5.21 4.21 8.57 4.44 7.41 6.76 5.36 7.04 7.95 17.39 4.62 2.78 6.25 6.51 7.35 11.43 7.25 7.64 5.00 9.62 7.30 13.27 9.09 7.14 8.57 11.27 16.22 7.14 6.54 4.60 6.03 5.56 6.74 12.20 10.94 8.33 6.15 11.11 10.17 11.48 5.30 10.00 7.45 7.34 7.80 6.17 6.14 4.90 9.68 8.33 4.35 14.43 K jcn_only_AD I_chr2R_4783150_4783708,Ggamma1,noncoding_5300 chr2R + chr2R_4788937_4789641 chr2R_4789028_4789641 chr2R_4789642_4789782;chr2R_4788908_4788936 96.15 NA NA NA NA NA NA NA 95.00 95.00 NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 95.83 100.00 NA NA 96.15 96.55 91.30 NA 100.00 NA NA NA NA NA NA NA NA NA 96.00 K intron_retention CG12304 chr3L + chr3L_15576982_15577386 chr3L_15576981_15576982;chr3L_15577386_15577387 chr3L_15576765_15576981;chr3L_15577387_15577539 1.53 0.00 2.00 3.03 3.23 0.00 2.78 0.00 1.01 0.00 4.00 1.27 0.00 2.78 5.41 0.00 0.00 0.00 0.00 1.80 4.00 0.00 2.61 0.76 2.27 5.41 2.94 10.00 3.33 2.50 9.09 0.00 0.00 3.17 0.00 0.00 2.92 0.81 1.53 1.61 4.76 2.15 6.25 0.00 2.78 0.00 0.00 3.92 0.00 0.00 2.73 0.00 0.00 0.00 2.08 2.80 0.00 0.00 K jcn_only_AA CG5288 chr3L - chr3L_8978332_8979076 chr3L_8978768_8979076 chr3L_8979077_8979103 4.55 NA NA NA NA NA NA NA 13.04 NA NA 4.55 NA NA 4.17 NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3.70 NA NA NA NA NA 4.55 15.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor RpS7,E_chr3R_26032339_26034298,I_chr3R_26034115_26034211,I_chr3R_26034118_26034211 chr3R - chr3R_26034118_26034211 chr3R_26034148_26034211 chr3R_26034212_26034311;chr3R_26034018_26034117 99.98 99.98 99.98 99.99 99.97 99.98 99.98 99.94 99.99 100.00 100.00 99.98 100.00 99.97 99.98 100.00 99.97 99.93 100.00 99.99 99.97 99.98 100.00 100.00 99.94 99.95 100.00 99.97 99.95 99.98 100.00 99.95 99.97 100.00 100.00 99.98 100.00 100.00 99.99 99.98 99.97 99.95 99.97 99.95 99.98 99.94 99.99 99.97 100.00 100.00 99.97 100.00 99.99 99.99 99.98 99.98 99.98 99.98 K intron_retention CG7920,I_chr3R_25837330_25837394 chr3R - chr3R_25836840_25836924 chr3R_25836839_25836840;chr3R_25836924_25836925 chr3R_25836132_25836839;chr3R_25836925_25837329 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.69 0.00 0.00 0.00 0.48 0.60 0.00 0.41 0.00 0.56 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 K alternative_donor CG17292,RI_chr2L_8372630_8372686 chr2L + chr2L_8372626_8372686 chr2L_8372630_8372686 chr2L_8372687_8372753;chr2L_8372530_8372625 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 2.63 0.00 0.00 3.70 1.37 0.00 3.33 0.00 0.00 NA 0.00 2.78 5.56 0.00 0.00 5.88 NA 5.56 0.00 0.00 NA 3.12 0.00 3.33 0.00 0.00 2.08 0.00 0.00 0.00 3.23 2.22 0.00 0.00 0.00 2.50 0.00 4.00 4.35 3.23 0.00 0.00 0.00 K intron_retention Roughened,I_chr3L_1861677_1861777,I_chr3L_1861677_1861929,I_chr3L_1861677_1862177 chr3L - chr3L_1861677_1862060 chr3L_1861676_1861677;chr3L_1862060_1862061 chr3L_1861577_1861676;chr3L_1862061_1862304 8.11 6.93 7.58 15.80 7.73 8.93 9.84 8.91 6.58 7.22 7.46 6.60 6.61 9.02 8.36 12.82 8.90 8.27 8.91 5.42 5.73 15.27 9.27 7.59 10.57 11.61 15.18 15.38 8.52 3.67 10.07 5.48 2.67 7.79 9.58 6.10 7.26 9.50 5.29 9.30 9.55 7.10 5.46 11.30 5.00 6.95 9.63 5.82 8.32 8.02 10.94 8.11 7.91 8.96 7.72 7.14 8.23 3.79 K intron_retention CG9776,CG9772 chr3R - chr3R_161452_161507 chr3R_161451_161452;chr3R_161507_161508 chr3R_161143_161451;chr3R_161508_161635 0.00 0.00 0.00 10.48 0.00 0.00 1.82 0.70 1.90 0.00 0.00 1.48 1.12 2.78 2.74 2.26 1.22 0.00 0.00 1.85 0.00 10.91 2.40 0.00 0.00 6.67 8.70 12.77 0.00 3.12 0.00 0.00 0.00 1.31 0.00 12.77 0.00 0.00 0.00 1.08 10.00 2.13 0.00 0.00 0.00 0.00 2.27 0.00 1.29 4.03 0.00 1.09 0.00 0.00 1.16 0.00 0.00 0.00 K intron_retention CG12065,CE_chrX_8469528_8477573 chrX + chrX_8478609_8478875 chrX_8478608_8478609;chrX_8478875_8478876 chrX_8478489_8478608;chrX_8478876_8478956 63.40 NA NA NA NA NA NA NA 63.64 NA NA 76.92 NA NA NA NA NA NA NA 38.89 NA 63.16 NA NA NA NA 54.55 NA 50.00 NA NA NA NA NA NA NA NA NA NA 90.00 NA 88.89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention LIMK1,I_chrX_12488942_12489000 chrX - chrX_12484518_12486079 chrX_12484517_12484518;chrX_12486079_12486080 chrX_12483874_12484517;chrX_12486080_12486162 93.33 90.00 100.00 93.75 100.00 83.33 90.91 95.24 83.33 100.00 90.91 95.45 91.67 87.50 91.67 95.65 100.00 90.91 90.91 88.00 84.62 70.45 100.00 100.00 NA 100.00 93.33 100.00 94.44 100.00 93.33 NA 92.00 95.45 100.00 93.75 90.91 94.44 91.67 96.15 NA 78.12 NA 95.24 NA 91.67 87.50 86.21 90.91 90.91 94.12 100.00 87.50 NA 93.75 87.50 100.00 100.00 K intron_retention Cp1,Aats-phe chr2R + chr2R_9853291_9854259 chr2R_9853290_9853291;chr2R_9854259_9854260 chr2R_9853110_9853290;chr2R_9854260_9854474 51.31 57.89 53.33 81.25 NA 66.67 48.78 62.50 56.25 NA 75.00 60.78 68.00 57.14 55.56 57.89 53.33 16.36 48.28 35.38 25.00 43.24 43.75 48.28 52.63 26.67 61.11 60.00 50.00 46.15 17.39 NA 70.00 53.12 66.67 54.55 42.11 53.33 42.11 44.74 50.00 52.78 50.00 38.46 NA 45.45 41.67 NA 58.70 41.18 54.84 52.63 33.33 47.83 57.89 33.33 26.00 44.44 K intron_retention noncoding_20813 chr4 + chr4_925384_927519 chr4_925383_925384;chr4_927519_927520 chr4_925367_925383;chr4_927520_927563 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 92.86 100.00 100.00 K intron_retention betaTub56D,I_chr2R_15336252_15336648,I_chr2R_15336252_15337409,I_chr2R_15336252_15338966 chr2R - chr2R_15336150_15338966 chr2R_15336149_15336150;chr2R_15338966_15338967 chr2R_15334824_15336149;chr2R_15338967_15339039 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.94 100.00 100.00 99.93 100.00 100.00 100.00 100.00 100.00 99.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG10602 chr2L - chr2L_18857404_18857587;chr2L_18857404_18857511 chr2L_18857404_18857541 chr2L_18857177_18857403;chr2L_18857588_18857700 9.09 3.57 12.00 10.53 0.00 9.09 13.16 6.82 5.88 NA 8.70 6.82 30.77 3.23 18.52 4.65 6.67 9.09 3.12 7.69 7.69 9.09 7.14 3.85 9.52 9.09 7.14 0.00 20.83 9.09 10.71 14.29 26.32 11.63 23.53 17.65 3.23 0.00 3.70 12.82 10.53 10.00 10.53 7.69 11.11 9.52 11.11 14.29 5.56 4.76 9.09 6.06 5.26 NA 11.11 9.52 7.14 17.65 K alternative_donor Ras85D,I_chr3R_5338160_5338509,EI_chr3R_5338175_5338279,I_chr3R_5338175_5338299 chr3R - chr3R_5338175_5338299;chr3R_5338175_5338509 chr3R_5338175_5338279 chr3R_5338075_5338174;chr3R_5338510_5338609 1.67 2.34 2.25 1.31 0.00 1.25 1.94 2.55 2.05 0.00 1.12 1.42 1.67 1.57 2.01 3.32 2.05 1.85 1.79 1.39 0.00 1.87 2.14 2.11 1.35 1.95 2.13 3.09 1.42 1.13 2.46 1.44 0.96 1.17 1.74 0.75 1.23 0.92 0.66 2.03 1.01 2.43 2.80 2.44 0.85 0.88 2.01 1.62 1.28 1.03 2.73 0.00 1.67 3.19 2.38 2.91 1.41 0.83 K cassette Stat92E,att-ORFB chr3R - chr3R_16363186_16364942 chr3R_16363186_16364266;chr3R_16364438_16364942 chr3R_16364267_16364437 chr3R_16362916_16363185;chr3R_16364943_16365057 6.71 5.66 11.79 1.40 7.96 6.94 3.60 4.37 6.07 1.45 23.77 10.14 2.15 6.94 5.03 6.52 5.44 6.31 4.33 10.88 19.46 17.00 7.69 6.80 5.88 6.10 4.69 3.23 7.84 6.78 8.47 6.90 7.92 6.62 6.72 13.54 8.44 7.75 6.13 6.42 6.33 6.71 6.25 5.26 6.59 6.92 9.73 9.42 7.14 6.99 5.58 7.34 9.80 5.31 6.41 6.56 6.57 11.11 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2389073;chrX_2389272_2392054;chrX_2392149_2392515;chrX_2392665_2395659 chrX_2389074_2389271;chrX_2392055_2392148;chrX_2392516_2392664 chrX_2387149_2387248;chrX_2395660_2395759 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 K intron_retention CG7267,CG15366,RI_chrX_8967339_8972369,I_chrX_8971691_8972369 chrX - chrX_8966023_8972369 chrX_8966022_8966023;chrX_8972369_8972370 chrX_8965905_8966022;chrX_8972370_8972469 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 K cassette CG11247,I_chr3L_21718596_21718659 chr3L - chr3L_21719051_21721386 chr3L_21719051_21719262;chr3L_21720038_21721386 chr3L_21719263_21720037 chr3L_21718941_21719050;chr3L_21721387_21721473 100.00 97.44 98.08 97.44 97.62 100.00 100.00 98.41 100.00 100.00 97.22 98.70 94.29 100.00 100.00 100.00 100.00 97.50 100.00 98.84 97.37 100.00 100.00 100.00 100.00 100.00 97.92 100.00 98.33 100.00 98.11 100.00 97.83 100.00 100.00 97.96 98.21 100.00 100.00 95.29 98.00 98.80 97.14 97.92 100.00 100.00 100.00 98.88 100.00 97.50 98.00 100.00 100.00 100.00 98.11 100.00 100.00 98.94 K intron_retention I_chr3L_207277_208117,thoc7,pyx chr3L - chr3L_212380_212444 chr3L_212379_212380;chr3L_212444_212445 chr3L_211669_212379;chr3L_212445_212556 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 3.39 0.00 0.00 0.00 2.46 0.00 0.00 0.00 0.00 0.00 0.00 4.08 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA sec23,I_chr3R_1474873_1475080,I_chr3R_1474899_1475080,I_chr3R_1474960_1475051,I_chr3R_1477727_1478102 chr3R + chr3R_1474899_1475093 chr3R_1474899_1475080 chr3R_1474877_1474898;chr3R_1475094_1475151 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD cact,RI_chr2L_16314859_16315116,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16325055_16325587;chr2L_16325055_16325493 chr2L_16325055_16325577 chr2L_16324333_16325054;chr2L_16325588_16325598 0.00 0.94 0.00 1.75 3.85 0.81 0.00 0.72 0.00 0.00 0.00 1.55 0.00 0.96 0.00 0.00 0.00 1.92 0.00 0.53 0.00 1.54 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.42 0.00 1.56 0.00 0.00 0.00 0.00 1.85 0.00 0.00 1.79 0.48 0.00 0.00 1.33 0.00 0.00 0.00 1.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG10543 chr2R + chr2R_16891767_16891831 chr2R_16891767_16891828 chr2R_16891658_16891766;chr2R_16891832_16894148 10.94 8.33 11.76 13.85 14.29 10.87 16.67 12.31 13.68 10.87 15.56 7.23 17.65 18.18 10.00 1.82 10.00 21.95 3.33 13.95 15.15 8.87 18.68 8.16 9.43 8.51 12.73 13.21 13.73 14.29 6.06 9.09 6.41 10.23 9.62 7.58 10.31 5.45 12.93 17.31 5.00 12.00 8.57 7.84 5.08 12.24 10.94 10.71 9.28 11.94 20.25 12.82 16.92 5.71 7.55 18.75 18.46 12.77 K intron_retention TFAM,RI_chr3R_16404530_16404635 chr3R - chr3R_16401344_16401867 chr3R_16401343_16401344;chr3R_16401867_16401868 chr3R_16400831_16401343;chr3R_16401868_16402446 0.00 0.00 0.00 12.77 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 2.86 0.00 0.00 0.00 5.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 2.63 0.00 0.00 1.41 3.85 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 K intron_retention Fbxl4 chrX - chrX_14129804_14129865 chrX_14129803_14129804;chrX_14129865_14129866 chrX_14129694_14129803;chrX_14129866_14130474 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA 10.53 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor Pink1,F_chrX_6578108_6578160,F_chrX_6578108_6578165,F_chrX_6578108_6578251,I_chrX_6578115_6578251 chrX + chrX_6578104_6578251;chrX_6578104_6578165 chrX_6578104_6578160 chrX_6578015_6578103;chrX_6578252_6578260 80.00 100.00 NA 70.00 NA 100.00 87.50 71.43 91.67 NA 60.00 80.00 85.71 50.00 100.00 70.00 NA 75.00 NA 70.00 40.00 57.14 80.00 100.00 100.00 NA 80.00 NA 50.00 NA NA NA 66.67 88.89 60.00 100.00 NA NA 83.33 91.67 80.00 73.33 50.00 NA 80.00 85.71 NA 75.00 69.23 NA 66.67 NA NA NA 83.33 80.00 NA 80.00 N multi_cassette Slip1,RI_chr4_684967_689045,I_chr4_685717_686576,RI_chr4_685717_689045,RI_chr4_687548_689045 chr4 + chr4_684967_689045 chr4_684967_685613;chr4_685932_686085;chr4_686263_686576;chr4_687548_689045 chr4_685614_685931;chr4_686086_686262;chr4_686577_687547 chr4_684914_684966;chr4_689046_689145 100.00 66.67 100.00 71.43 100.00 66.67 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 88.89 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 100.00 100.00 75.00 100.00 85.71 85.71 100.00 100.00 100.00 NA 100.00 100.00 80.00 83.33 100.00 66.67 66.67 83.33 100.00 100.00 85.71 50.00 100.00 66.67 100.00 100.00 100.00 100.00 66.67 100.00 K intron_retention Roughened,I_chr3L_1861677_1861777,I_chr3L_1861677_1861929,I_chr3L_1861677_1862177 chr3L - chr3L_1861677_1862177 chr3L_1861676_1861677;chr3L_1862177_1862178 chr3L_1861577_1861676;chr3L_1862178_1862277 98.85 97.10 98.80 99.22 100.00 98.63 99.04 98.48 98.68 100.00 98.78 98.75 98.44 98.81 100.00 100.00 100.00 99.01 98.81 99.05 100.00 98.28 100.00 100.00 100.00 100.00 98.51 100.00 98.11 100.00 98.85 100.00 100.00 97.62 97.92 97.92 99.22 100.00 98.77 95.92 100.00 97.86 98.53 98.41 98.36 98.25 100.00 100.00 97.98 100.00 98.70 98.78 98.00 97.14 99.03 100.00 100.00 100.00 K intron_retention CG3621,noncoding_21543,I_chrX_2066779_2066838 chrX + chrX_2066739_2066838 chrX_2066738_2066739;chrX_2066838_2066839 chrX_2066679_2066738;chrX_2066839_2066938 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3061 chr3R + chr3R_9859822_9859883 chr3R_9859821_9859822;chr3R_9859883_9859884 chr3R_9859709_9859821;chr3R_9859884_9860047 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.69 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 K intron_retention G-ialpha65A,I_chr3L_6967574_6972726 chr3L - chr3L_6966879_6966937 chr3L_6966878_6966879;chr3L_6966937_6966938 chr3L_6966690_6966878;chr3L_6966938_6967032 0.25 0.00 0.25 0.00 0.00 0.00 0.29 0.00 0.67 0.26 0.00 0.47 0.00 0.58 0.53 0.60 0.00 0.00 0.25 0.12 0.25 0.66 0.30 0.00 0.52 0.57 1.66 3.77 0.45 0.26 0.00 0.00 0.66 0.49 0.33 1.24 0.00 0.20 0.00 0.75 0.43 0.38 0.00 0.18 0.00 0.61 0.88 0.00 0.56 0.38 0.32 0.46 0.00 0.00 0.00 0.00 0.16 0.00 K jcn_only_AD CG6498,EI_chr3L_15559245_15561305,chr3L_15559614_15559828.0,I_chr3L_15561224_15561305 chr3L + chr3L_15559254_15561305 chr3L_15559289_15561305 chr3L_15561306_15561405;chr3L_15559179_15559253 3.70 4.35 4.55 0.00 4.76 NA 3.70 0.00 1.89 NA 0.00 2.00 4.55 NA NA 2.94 4.17 NA NA 3.85 4.76 4.62 3.64 13.21 NA NA 3.23 0.00 NA 0.00 4.55 NA 11.11 6.45 NA 2.86 5.41 0.00 9.68 0.00 NA 0.00 NA NA NA NA NA 13.04 3.03 NA 4.92 NA NA NA 0.00 NA NA NA K alternative_acceptor CG4901,RI_chr2L_10212268_10212326,RI_chr2L_10212403_10212451 chr2L + chr2L_10212403_10212467 chr2L_10212403_10212451 chr2L_10212327_10212402;chr2L_10212468_10212551 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 5.26 0.00 2.56 0.00 0.00 0.00 0.00 5.88 0.00 0.00 2.56 0.00 1.16 0.00 0.00 3.45 1.89 3.12 1.82 0.00 0.00 3.33 0.00 0.00 0.00 2.27 3.45 0.00 0.00 0.00 2.44 NA 0.00 0.00 0.00 0.00 0.00 0.79 N alternative_acceptor CG42394,noncoding_15936,E_chr3R_6675742_6676058 chr3R + chr3R_6677211_6677270;chr3R_6677211_6677262 chr3R_6677211_6677344 chr3R_6677007_6677210;chr3R_6677345_6677430 0.00 0.00 0.00 6.96 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention nes chr3L - chr3L_19253331_19253636 chr3L_19253330_19253331;chr3L_19253636_19253637 chr3L_19253215_19253330;chr3L_19253637_19253779 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 93.33 NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA NA 100.00 NA 100.00 100.00 NA 90.91 NA NA NA NA 92.31 NA 100.00 NA NA NA 92.31 NA 100.00 NA NA NA NA NA 100.00 91.67 NA NA NA NA NA 100.00 NA NA NA K jcn_only_AA CG13384 chr2L + chr2L_8384541_8386216 chr2L_8384541_8384699 chr2L_8384486_8384540 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 K intron_retention nrv1 chr2L - chr2L_6779652_6779711 chr2L_6779651_6779652;chr2L_6779711_6779712 chr2L_6779585_6779651;chr2L_6779712_6779804 0.18 0.00 0.00 0.69 0.00 0.00 0.00 0.26 0.41 0.00 0.00 0.53 0.00 0.00 0.00 0.54 0.00 1.06 0.00 0.18 0.00 0.59 0.79 0.93 0.00 0.00 1.47 0.55 3.61 0.00 0.00 0.65 1.13 0.52 0.48 0.44 0.00 0.00 0.73 0.47 1.45 0.83 0.00 0.00 0.55 0.47 0.00 0.38 0.00 1.03 0.00 0.00 0.53 0.00 0.00 0.44 0.00 0.64 K intron_retention tho2 chr2L - chr2L_2138159_2139629 chr2L_2138158_2138159;chr2L_2139629_2139630 chr2L_2137984_2138158;chr2L_2139630_2139673 19.05 18.37 16.67 16.39 12.50 6.45 30.00 16.67 18.18 42.86 11.76 13.58 29.63 18.18 15.22 52.00 27.78 6.38 17.50 15.58 28.21 10.53 26.53 22.22 19.05 16.67 19.23 24.00 37.04 16.22 23.40 14.29 26.92 21.88 19.35 33.33 23.40 9.68 20.00 18.60 20.00 17.02 20.69 21.05 13.95 13.79 7.41 19.51 22.73 25.00 17.39 23.08 23.53 9.52 22.45 15.79 25.00 17.31 K intron_retention spn-D chr3R + chr3R_22991825_22991881 chr3R_22991824_22991825;chr3R_22991881_22991882 chr3R_22991815_22991824;chr3R_22991882_22991944 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention Mec2,I_chrX_19082929_19083066,I_chrX_19083581_19083676 chrX + chrX_19083839_19083917 chrX_19083838_19083839;chrX_19083917_19083918 chrX_19083673_19083838;chrX_19083918_19084237 0.65 0.00 0.43 1.52 0.32 0.45 2.15 1.14 0.54 0.90 0.96 0.28 0.40 0.59 0.82 0.93 0.59 0.28 0.51 0.63 0.65 0.46 1.11 0.39 0.61 0.84 2.02 1.62 4.38 0.57 1.47 0.78 0.70 0.18 0.89 1.31 0.67 0.76 0.53 0.46 2.18 1.05 0.59 0.45 0.73 0.77 0.83 1.14 0.65 0.39 0.93 0.00 0.43 0.74 0.40 0.33 0.29 0.84 N jcn_only_AA CG31710 chr2L - chr2L_9703179_9703267 chr2L_9703182_9703267 chr2L_9703268_9703605;chr2L_9702964_9703178 0.00 NA 0.00 35.42 NA NA 0.00 30.95 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA NA 45.83 0.00 NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 25.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 31.11 0.00 NA NA 0.00 NA 37.93 0.00 39.02 31.11 K intron_retention itp chr2R + chr2R_20433214_20442876 chr2R_20433213_20433214;chr2R_20442876_20442877 chr2R_20433150_20433213;chr2R_20442877_20443094 25.00 23.08 35.29 43.75 25.00 33.33 21.05 37.50 28.57 NA 16.67 30.77 30.77 NA 38.46 33.33 21.05 23.08 17.24 40.00 NA NA 11.11 NA NA NA 23.53 NA NA NA 26.67 NA NA 30.00 NA NA 17.65 NA NA NA NA 20.00 NA NA NA NA 6.25 NA 14.71 NA 7.69 NA NA NA 43.75 NA NA NA K intron_retention Pk61C,CE_chr3L_129889_141769,I_chr3L_136336_137121,I_chr3L_136336_141563 chr3L + chr3L_136336_141769 chr3L_136335_136336;chr3L_141769_141770 chr3L_136236_136335;chr3L_141770_141837 5.00 6.56 7.26 3.60 3.60 4.95 7.14 5.62 6.10 3.81 8.57 6.67 8.00 6.38 7.20 8.09 5.41 7.53 11.11 6.16 8.82 5.06 3.29 4.88 6.06 9.09 4.17 5.61 1.75 2.87 5.06 1.85 4.25 7.14 7.92 3.62 3.91 3.54 2.44 4.69 3.10 5.86 6.94 2.45 1.65 2.19 5.00 1.72 6.10 2.63 4.03 4.82 2.27 6.56 7.87 2.74 1.75 2.35 K jcn_only_AD CG4901,RI_chr2L_10212268_10212326,RI_chr2L_10212403_10212451 chr2L + chr2L_10212264_10212326 chr2L_10212268_10212326 chr2L_10212327_10212402;chr2L_10212168_10212263 0.00 3.92 0.00 0.00 0.00 0.00 0.00 1.15 0.85 NA 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 1.25 0.00 0.00 0.00 1.16 2.70 0.00 0.00 4.88 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.93 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 1.23 0.00 1.59 2.04 1.92 0.00 0.00 1.75 0.00 0.00 K intron_retention I_chr3R_1183570_1183645,CG16708 chr3R - chr3R_1187483_1193642 chr3R_1187482_1187483;chr3R_1193642_1193643 chr3R_1185701_1187482;chr3R_1193643_1194012 11.67 7.02 12.50 11.67 11.11 12.50 11.11 19.32 12.69 12.90 12.12 26.74 19.67 18.18 17.19 15.25 24.44 16.33 17.54 11.65 15.79 8.05 9.46 6.56 11.90 13.04 6.45 16.36 22.22 12.24 12.77 10.00 4.26 11.70 9.52 11.32 6.58 3.92 10.00 10.71 8.33 9.82 20.00 3.70 10.00 14.58 8.51 16.00 13.68 7.27 6.45 15.38 8.51 6.25 18.31 8.89 9.09 6.38 K intron_retention I_chr3R_8822346_8822403,CG7518 chr3R + chr3R_8828630_8828691 chr3R_8828629_8828630;chr3R_8828691_8828692 chr3R_8828493_8828629;chr3R_8828692_8831118 0.00 0.00 2.50 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 1.59 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 2.70 1.27 0.00 4.88 0.00 0.00 0.00 0.00 0.89 0.83 1.33 0.00 0.00 0.00 0.00 1.19 1.23 1.22 0.00 0.00 2.35 0.98 0.00 2.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.88 1.03 K intron_retention CG34133,F_chr3R_25696884_25696960 chr3R + chr3R_25698987_25699045 chr3R_25698986_25698987;chr3R_25699045_25699046 chr3R_25698427_25698986;chr3R_25699046_25699864 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Aats-asp chr2R + chr2R_8768376_8768454 chr2R_8768375_8768376;chr2R_8768454_8768455 chr2R_8768275_8768375;chr2R_8768455_8768780 0.00 0.00 0.00 0.35 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.55 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG3566 chrX - chrX_6169204_6170260 chrX_6169204_6170086 chrX_6169003_6169203;chrX_6170261_6170329 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG6006 chr3R + chr3R_11984096_11984579;chr3R_11983962_11984579;chr3R_11984029_11984579;chr3R_11984018_11984579 chr3R_11984036_11984579 chr3R_11984580_11984637;chr3R_11983945_11983961 22.23 NA NA NA NA NA 13.64 NA 19.23 NA NA NA NA NA NA NA NA NA NA NA NA NA 55.00 NA NA NA 54.17 NA NA NA NA NA NA 22.73 NA NA NA NA NA NA NA 27.50 NA NA NA NA NA NA 12.90 NA 21.74 NA NA NA NA NA NA NA K intron_retention cwo,noncoding_15870,chr3R_6215619_6216520.0,chr3R_6216827_6217291.0,chr3R_6217556_6219555.0,chr3R_6219984_6221958.0 chr3R + chr3R_6215160_6222418 chr3R_6215159_6215160;chr3R_6222418_6222419 chr3R_6214846_6215159;chr3R_6222419_6222542 17.50 0.00 7.14 16.67 NA NA 25.00 14.29 20.00 12.50 NA 16.67 13.33 NA NA 16.67 NA NA 14.29 10.00 NA 21.28 19.05 26.67 35.71 23.08 29.63 35.29 20.69 19.35 28.57 14.29 17.50 20.00 24.00 13.64 13.79 19.05 20.00 24.32 22.73 14.29 NA 11.76 6.67 14.29 33.33 16.28 21.43 13.79 24.24 19.05 NA NA 12.50 NA 14.29 14.29 K jcn_only_AA cni,RI_chr2L_16309575_16309999,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16310624_16310690;chr2L_16310641_16310690 chr2L_16310637_16310690 chr2L_16310691_16310700;chr2L_16310441_16310623 7.37 15.00 5.88 6.41 6.25 7.89 4.76 7.37 6.10 NA 0.00 12.50 8.57 5.56 14.81 4.11 3.03 21.62 3.23 8.82 7.69 NA 9.52 10.81 11.54 11.36 0.00 NA NA NA 14.63 NA NA 7.06 NA NA 10.71 NA 8.33 NA NA 4.29 6.52 NA NA 9.52 5.00 NA 8.00 25.81 3.23 4.35 NA NA 6.78 11.76 6.06 NA K intron_retention POSH,RI_chr2R_13458667_13458738,Rab4,I_chr2R_13461027_13461136 chr2R + chr2R_13458919_13458977 chr2R_13458918_13458919;chr2R_13458977_13458978 chr2R_13458739_13458918;chr2R_13458978_13459271 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.71 1.33 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG30122,I_chr2R_14523798_14523844,I_chr2R_14526123_14526189 chr2R - chr2R_14523777_14523844 chr2R_14523798_14523844 chr2R_14523845_14523944;chr2R_14523698_14523776 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG2249,RI_chr2R_5937150_5937205,I_chr2R_5937410_5937470 chr2R + chr2R_5937405_5937464 chr2R_5937410_5937464 chr2R_5937465_5937533;chr2R_5937341_5937404 65.75 66.67 72.22 77.33 65.12 67.74 64.91 65.75 60.61 68.63 67.57 69.84 58.54 59.68 74.24 72.55 62.50 68.52 70.59 67.46 74.36 65.00 64.95 59.74 65.12 75.56 63.20 65.57 62.96 67.06 69.53 68.89 57.32 73.17 64.93 66.15 64.89 64.25 62.77 61.29 61.40 76.77 63.64 60.90 65.75 66.53 67.03 63.41 69.84 64.71 65.80 59.81 65.11 66.47 74.70 63.37 65.84 71.05 N jcn_only_AA Vps13,I_chr2R_3464510_3464571 chr2R + chr2R_3454389_3456383 chr2R_3454389_3454650 chr2R_3454371_3454388 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 73.81 NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA NA NA NA NA 72.41 100.00 51.92 NA 53.66 100.00 NA NA 100.00 NA NA 81.54 NA 100.00 NA 72.92 NA NA NA 70.67 100.00 NA NA NA NA NA 100.00 NA NA NA K jcn_only_AA Sdc,I_chr2R_17286819_17367595,I_chr2R_17324594_17367595 chr2R - chr2R_17367884_17368518;chr2R_17367862_17368518 chr2R_17368045_17368518 chr2R_17368519_17368632;chr2R_17367596_17367861 0.00 NA NA 4.44 NA 0.00 0.00 5.66 6.45 NA NA 3.23 0.00 0.00 NA 0.00 NA NA 0.00 5.71 NA NA NA NA NA 6.90 NA NA 4.55 NA 2.13 NA NA 0.00 NA NA NA NA NA NA 0.00 2.44 9.52 NA NA 0.00 NA 0.00 2.78 NA NA NA NA NA 0.00 NA NA 0.00 K intron_retention CG9992 chrX - chrX_16277201_16277356 chrX_16277200_16277201;chrX_16277356_16277357 chrX_16276939_16277200;chrX_16277357_16277544 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 6.67 4.88 0.00 1.64 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 3.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 2.27 3.92 0.00 0.00 0.00 0.00 3.12 2.56 0.00 0.00 K alternative_donor CG8929 chr2R + chr2R_16215069_16215371 chr2R_16215075_16215371 chr2R_16215372_16215639;chr2R_16214949_16215068 100.00 NA NA NA NA NA 88.89 90.00 92.31 NA NA 90.91 NA NA 100.00 100.00 NA NA 100.00 87.50 NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 90.91 NA 100.00 NA NA NA NA 90.00 NA NA NA NA NA 100.00 NA NA NA K intron_retention Exp6,I_chrX_369347_369797 chrX - chrX_370326_370426 chrX_370325_370326;chrX_370426_370427 chrX_369802_370325;chrX_370427_370615 8.52 NA NA 23.53 NA NA 21.05 0.00 8.33 NA NA 19.23 NA 0.00 5.56 5.00 NA NA 0.00 4.76 NA 6.25 4.35 0.00 NA NA 25.00 33.33 NA NA 12.00 NA NA 0.00 NA 20.00 NA 7.14 10.53 10.53 NA 13.79 NA NA NA NA NA 33.33 8.70 NA 14.29 NA NA NA 8.33 NA NA NA K jcn_only_AA Pdp1,RI_chr3L_7809841_7810536,I_chr3L_7813130_7818683,I_chr3L_7831960_7846282 chr3L - chr3L_7809712_7810536;chr3L_7809841_7810536 chr3L_7809826_7810536 chr3L_7810537_7810636;chr3L_7809584_7809711 87.96 88.46 93.65 83.67 86.54 83.87 86.36 86.76 90.79 90.54 74.07 83.33 93.94 86.96 91.07 84.21 94.83 82.26 94.64 88.37 87.50 89.90 88.46 87.88 91.55 84.00 81.42 92.71 88.06 88.16 92.73 83.33 73.33 86.90 79.69 91.89 90.30 90.10 90.62 85.34 95.00 91.78 82.93 91.96 82.09 89.23 79.37 92.78 87.96 94.74 90.48 86.89 68.63 85.94 89.55 86.08 83.95 84.09 K jcn_only_AA chinmo chr2L + chr2L_1667982_1690116 chr2L_1667982_1670143 chr2L_1667913_1667981 5.83 NA NA 8.82 NA NA 8.00 10.34 6.90 NA NA 8.57 NA 0.00 NA 2.70 NA 4.76 NA 18.18 NA NA NA NA NA NA NA NA NA NA NA NA NA 3.23 NA NA NA NA NA NA NA 3.85 NA NA NA NA NA NA 4.65 NA NA NA NA NA NA NA NA NA K alternative_donor CG12734,I_chr3L_3183812_3183932,I_chr3L_3184645_3185360 chr3L + chr3L_3183998_3184248 chr3L_3184038_3184248 chr3L_3184249_3185272;chr3L_3183933_3183997 95.74 100.00 88.89 94.12 100.00 88.89 94.12 94.44 96.43 93.33 NA 92.31 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 95.45 93.75 100.00 100.00 95.65 94.74 100.00 100.00 94.12 95.00 100.00 90.48 94.44 94.29 94.74 97.50 83.33 100.00 100.00 90.00 94.74 86.36 95.00 95.83 81.25 95.24 100.00 96.88 100.00 92.86 100.00 100.00 95.65 94.44 100.00 K cassette CG8079,I_chr2R_11109323_11109403 chr2R + chr2R_11109329_11109548 chr2R_11109329_11109403;chr2R_11109486_11109548 chr2R_11109404_11109485 chr2R_11109233_11109328;chr2R_11109549_11109930 29.41 20.00 NA 41.67 NA NA NA 41.67 25.00 NA NA 30.77 NA NA NA NA NA 40.00 25.00 26.32 18.18 NA 23.81 40.00 NA NA 30.77 NA NA NA 60.00 NA NA 30.77 NA NA 29.41 25.00 23.53 23.08 NA 38.46 NA 44.44 NA NA NA NA 46.15 18.18 35.71 15.38 NA NA NA 21.43 29.41 NA K alternative_donor CG7059 chr3R + chr3R_18215796_18216915 chr3R_18215925_18216915 chr3R_18216916_18217028;chr3R_18215762_18215795 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention Nop60B,AT25722,F_chr2R_20073291_20073744,snoRNA:Or-CD9b,snmRNA:60Cb chr2R + chr2R_20073545_20073744 chr2R_20073544_20073545;chr2R_20073744_20073745 chr2R_20073514_20073544;chr2R_20073745_20073751 7.14 NA NA 15.00 NA NA 0.00 14.29 5.88 NA NA 7.41 NA 14.29 NA 13.95 NA NA NA 0.00 NA NA 0.00 5.56 NA NA NA 8.33 NA NA 9.52 11.76 NA 11.76 14.29 NA NA NA NA 0.00 NA 6.67 NA NA NA 4.76 NA NA 7.14 0.00 4.55 NA 10.71 10.53 NA NA 0.00 5.26 K jcn_only_AA Ide,I_chr3L_20366301_20366354,I_chr3L_20368434_20368519,I_chr3L_20368443_20368519 chr3L - chr3L_20368434_20368519;chr3L_20368462_20368519 chr3L_20368443_20368519 chr3L_20368520_20368619;chr3L_20368343_20368433 1.08 1.49 0.00 1.59 0.00 4.44 1.14 1.08 0.74 6.06 0.00 1.94 0.00 0.00 1.72 0.00 2.17 0.00 1.79 0.85 0.00 2.90 5.95 1.32 9.76 0.00 0.00 3.92 3.03 0.00 5.49 0.00 5.00 1.32 0.00 2.13 2.86 1.79 0.00 0.00 2.86 1.83 0.00 0.94 0.00 0.00 0.00 0.71 1.90 0.00 0.00 2.17 0.00 0.00 2.74 3.77 2.44 0.00 K intron_retention Eip71CD chr3L + chr3L_15504270_15505271 chr3L_15504269_15504270;chr3L_15505271_15505272 chr3L_15504153_15504269;chr3L_15505272_15505453 0.00 0.00 NA 0.00 0.00 NA 0.00 7.41 4.88 0.00 NA 2.27 NA 0.00 0.00 3.23 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 4.17 3.57 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Ac3,I_chr2L_21635211_21637957,I_chr2L_21643253_21646594 chr2L + chr2L_21641146_21641248 chr2L_21641145_21641146;chr2L_21641248_21641249 chr2L_21641073_21641145;chr2L_21641249_21641324 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA 7.14 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA K intron_retention CG3777,Or1a chrX + chrX_209662_209807 chrX_209661_209662;chrX_209807_209808 chrX_209042_209661;chrX_209808_210411 42.27 NA NA NA NA NA 29.27 64.29 50.00 NA NA NA NA NA NA NA 46.15 27.27 33.33 36.36 NA NA NA NA NA 41.67 35.71 NA NA NA NA NA NA 40.00 NA NA NA NA NA 50.00 NA 63.64 NA NA NA 35.71 NA NA 58.33 NA NA NA NA NA 53.85 NA 42.86 NA K cassette Asph,C_chr2R_12000224_12000293,I_chr2R_12002559_12002858,I_chr2R_12003264_12003325 chr2R + chr2R_11998177_11999245 chr2R_11998177_11999005;chr2R_11999060_11999245 chr2R_11999006_11999059 chr2R_11998054_11998176;chr2R_11999246_11999431 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA K intron_retention CG34123,RI_chr2R_11160894_11162043,I_chr2R_11167854_11168411 chr2R - chr2R_11172472_11180277 chr2R_11172471_11172472;chr2R_11180277_11180278 chr2R_11172389_11172471;chr2R_11180278_11180344 7.14 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG12213 chr3R - chr3R_7792009_7792209 chr3R_7792008_7792009;chr3R_7792209_7792210 chr3R_7791324_7792008;chr3R_7792210_7792455 15.69 19.35 10.42 20.20 17.02 12.07 12.24 11.54 10.71 15.15 9.09 17.53 13.04 9.76 13.79 15.52 12.00 14.00 11.29 12.24 18.92 24.59 15.07 15.71 21.88 19.30 21.15 21.15 16.18 19.30 21.74 8.77 17.78 14.08 21.74 18.00 19.30 19.51 16.39 11.70 13.85 18.42 7.69 17.86 11.36 11.90 20.41 7.02 13.46 15.69 20.63 23.68 10.53 20.00 11.94 18.06 18.18 9.01 K intron_retention Nup98 chr3R - chr3R_19602256_19602314 chr3R_19602255_19602256;chr3R_19602314_19602315 chr3R_19601244_19602255;chr3R_19602315_19602597 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG5794,I_chr3R_20475643_20475715 chr3R - chr3R_20475643_20475721 chr3R_20475643_20475715 chr3R_20475543_20475642;chr3R_20475722_20475736 72.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA 60.00 NA NA NA NA NA NA 77.78 NA NA NA NA NA NA NA NA NA K intron_retention I_chrX_3345099_3416710,CG10803,I_chrX_3380218_3380345 chrX + chrX_3380055_3380115 chrX_3380054_3380055;chrX_3380115_3380116 chrX_3379703_3380054;chrX_3380116_3380170 92.33 NA NA NA NA NA NA NA 90.91 NA NA 77.78 NA NA NA NA NA NA NA 93.75 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K mutually_exclusive CG11299,noncoding_8970,I_chr2R_19602423_19609308,I_chr2R_19619053_19619186 chr2R + chr2R_19601642_19609732,chr2R_19610399_19616571 chr2R_19601642_19602203,chr2R_19602423_19616571 chr2R_19609733_19610398 chr2R_19602204_19602422 chr2R_19601628_19601641;chr2R_19616572_19616757 33.33 33.33 NA 75.00 42.86 66.67 NA 0.00 16.67 NA NA 60.00 0.00 50.00 NA 33.33 NA 0.00 33.33 50.00 NA NA 8.33 0.00 20.00 75.00 0.00 50.00 0.00 0.00 50.00 NA NA NA 50.00 NA 50.00 16.67 50.00 60.00 25.00 16.67 0.00 NA 0.00 0.00 50.00 33.33 33.33 28.57 25.00 0.00 50.00 20.00 66.67 33.33 33.33 33.33 K intron_retention tws,I_chr3R_5960899_5960978,CG6241 chr3R - chr3R_5955369_5958936 chr3R_5955368_5955369;chr3R_5958936_5958937 chr3R_5955217_5955368;chr3R_5958937_5959282 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1399,I_chr2R_3574133_3574191 chr2R - chr2R_3566312_3566372 chr2R_3566311_3566312;chr2R_3566372_3566373 chr2R_3566198_3566311;chr2R_3566373_3566777 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 1.61 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 K intron_retention CG11412,Tsp2A chrX + chrX_1237569_1237811 chrX_1237568_1237569;chrX_1237811_1237812 chrX_1237323_1237568;chrX_1237812_1238806 0.00 0.00 0.00 8.82 0.00 0.00 0.00 2.56 2.60 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 5.26 0.00 2.70 0.00 11.32 0.00 2.44 0.00 0.00 1.54 4.00 5.13 0.00 2.38 0.00 0.00 2.17 0.00 0.00 0.72 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention eIF4AIII chr3R + chr3R_4139867_4139927 chr3R_4139866_4139867;chr3R_4139927_4139928 chr3R_4139675_4139866;chr3R_4139928_4140629 1.68 0.00 1.98 0.00 2.22 0.00 1.26 1.57 0.00 0.00 0.00 1.29 0.00 2.17 0.00 2.99 2.22 0.97 0.00 1.92 0.00 3.45 0.00 1.80 2.41 0.88 1.80 13.64 3.39 0.00 4.35 3.03 0.00 0.00 1.56 2.47 1.68 0.00 1.40 0.00 1.72 0.53 0.00 0.00 6.74 3.81 0.00 1.96 3.07 3.16 1.89 0.00 5.13 1.89 1.68 1.89 5.15 12.50 K intron_retention pygo,noncoding_20344 chr3R - chr3R_27413824_27413939 chr3R_27413823_27413824;chr3R_27413939_27413940 chr3R_27413719_27413823;chr3R_27413940_27413967 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 91.67 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 87.50 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor bol,RI_chr3L_9117011_9118271 chr3L - chr3L_9116901_9118266;chr3L_9116877_9118266 chr3L_9117011_9118266 chr3L_9118267_9118272;chr3L_9116716_9116876 77.50 NA NA NA NA NA 75.00 NA 85.71 NA NA 50.00 80.00 NA NA 83.33 NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA 66.67 NA NA 60.00 NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA K intron_retention Qm,RI_chr3L_23087947_23088093,I_chr3L_23088406_23088824 chr3L - chr3L_23088312_23088374 chr3L_23088311_23088312;chr3L_23088374_23088375 chr3L_23088306_23088311;chr3L_23088375_23088402 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.28 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG10981 chr3R + chr3R_1650698_1650754;chr3R_1650698_1650757 chr3R_1650698_1650778 chr3R_1650443_1650697;chr3R_1650779_1651166 16.67 17.24 24.14 12.50 NA 23.08 10.81 17.24 14.04 NA NA 18.18 33.33 25.00 6.67 13.33 17.39 20.00 44.00 16.30 NA 16.67 16.67 17.95 11.11 24.14 13.21 NA NA 13.04 7.41 25.00 20.00 15.71 16.13 20.69 NA 25.93 20.59 20.00 NA 18.97 NA NA NA 12.50 9.68 8.33 11.76 13.51 21.05 NA 16.22 28.12 12.12 12.12 11.90 0.00 K intron_retention CG7656,I_chr3L_15580697_15581083 chr3L - chr3L_15580697_15581154 chr3L_15580696_15580697;chr3L_15581154_15581155 chr3L_15580597_15580696;chr3L_15581155_15581183 0.00 0.00 0.00 2.13 0.00 0.00 1.56 0.00 2.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 4.17 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention Csk,I_chr3R_7463337_7463512,I_chr3R_7468917_7472437,I_chr3R_7468917_7472509,I_chr3R_7468928_7472509 chr3R - chr3R_7463337_7463822 chr3R_7463336_7463337;chr3R_7463822_7463823 chr3R_7463237_7463336;chr3R_7463823_7463928 24.06 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 11.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG2924,I_chrX_2168373_2168893 chrX - chrX_2159519_2159580 chrX_2159518_2159519;chrX_2159580_2159581 chrX_2159443_2159518;chrX_2159581_2159849 82.18 81.25 79.55 93.67 79.55 80.56 85.94 91.46 80.00 93.10 85.11 75.31 79.07 78.05 77.97 82.09 84.62 88.10 81.25 85.86 89.74 63.04 88.89 75.00 83.33 93.02 85.45 60.00 86.96 81.25 85.48 77.78 77.42 82.28 86.36 95.65 73.02 75.76 73.47 73.58 94.44 82.18 88.10 72.09 96.15 85.29 78.05 75.00 88.89 84.75 80.00 87.18 75.00 85.11 82.76 76.92 91.49 72.41 K intron_retention Bruce chr3R - chr3R_6140793_6140846 chr3R_6140792_6140793;chr3R_6140846_6140847 chr3R_6139961_6140792;chr3R_6140847_6141461 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.97 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Taf7 chr3R + chr3R_3733542_3733605 chr3R_3733541_3733542;chr3R_3733605_3733606 chr3R_3733404_3733541;chr3R_3733606_3735445 0.00 0.00 0.00 10.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.89 0.00 0.00 0.00 0.00 0.00 10.53 12.50 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention UBL3 chrX - chrX_15745230_15745617 chrX_15745229_15745230;chrX_15745617_15745618 chrX_15745121_15745229;chrX_15745618_15746576 0.00 0.00 0.00 0.00 0.00 0.00 2.27 3.45 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 6.25 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG6043,I_chr2L_13267973_13268086 chr2L + chr2L_13274377_13274690;chr2L_13274377_13274651 chr2L_13274377_13274642 chr2L_13274310_13274376;chr2L_13274691_13274770 52.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA 57.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 52.00 NA NA NA NA NA NA NA NA K intron_retention Pdk chr2R + chr2R_5320734_5321858 chr2R_5320733_5320734;chr2R_5321858_5321859 chr2R_5320635_5320733;chr2R_5321859_5321930 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 NA NA 100.00 100.00 NA 91.67 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 88.89 100.00 NA 100.00 100.00 100.00 100.00 87.50 88.89 100.00 100.00 93.75 NA K intron_retention foi,I_chr3L_8524905_8524976 chr3L + chr3L_8524250_8524316 chr3L_8524249_8524250;chr3L_8524316_8524317 chr3L_8523660_8524249;chr3L_8524317_8524665 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention ATPCL,RFI_chr2R_11883823_11884399,I_chr2R_11887476_11888411 chr2R - chr2R_11882308_11882369 chr2R_11882307_11882308;chr2R_11882369_11882370 chr2R_11881967_11882307;chr2R_11882370_11883603 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention trsn,I_chr2R_6421904_6422354 chr2R - chr2R_6367103_6367164 chr2R_6367102_6367103;chr2R_6367164_6367165 chr2R_6366987_6367102;chr2R_6367165_6367261 0.00 0.00 0.00 1.27 0.00 0.00 4.17 0.00 1.72 0.00 4.55 4.76 1.89 5.00 0.00 0.00 0.00 2.38 0.00 3.03 0.00 0.00 10.26 0.00 12.00 0.00 4.44 3.23 20.00 7.41 15.56 0.00 0.00 2.44 0.00 13.33 3.85 8.57 0.00 0.00 8.70 0.00 2.50 0.00 2.44 0.00 0.00 4.35 0.00 3.57 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention lbm chr2R + chr2R_2938727_2938782 chr2R_2938726_2938727;chr2R_2938782_2938783 chr2R_2938568_2938726;chr2R_2938783_2939118 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.90 0.00 0.00 0.00 1.72 0.99 0.00 1.22 0.00 1.23 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.68 K intron_retention Rnp4F,I_chrX_5214525_5214591 chrX - chrX_5213967_5214030 chrX_5213966_5213967;chrX_5214030_5214031 chrX_5213846_5213966;chrX_5214031_5214253 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 2.38 1.35 2.44 0.00 0.00 0.00 2.04 0.00 0.00 1.82 0.00 0.00 0.00 1.23 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD hang,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16328892_16329177 chrX_16328906_16329177 chrX_16329178_16329187;chrX_16328792_16328891 99.43 98.48 100.00 99.37 99.28 99.26 100.00 100.00 99.70 99.31 98.41 98.79 98.80 100.00 98.71 100.00 100.00 100.00 98.90 99.22 97.87 99.08 100.00 99.29 100.00 98.58 96.45 100.00 99.69 100.00 100.00 98.66 99.43 100.00 99.23 98.21 99.50 99.26 99.26 98.98 99.37 100.00 100.00 99.55 100.00 99.55 100.00 99.43 100.00 96.91 98.09 98.72 100.00 100.00 100.00 99.02 100.00 100.00 K jcn_only_AA CG31720,F_chr2L_10234951_10235484 chr2L - chr2L_10236257_10236374;chr2L_10236287_10236374 chr2L_10236292_10236374 chr2L_10236375_10236547;chr2L_10236031_10236256 22.27 NA NA NA NA NA NA NA 4.55 NA NA NA NA NA NA NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17397707_17398371 chr2R_17397706_17397707;chr2R_17398371_17398372 chr2R_17397623_17397706;chr2R_17398372_17398565 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N multi_cassette F_chr3LHet_2242956_2248238,vtd,F_chr3LHet_2248430_2248476,F_chr3LHet_2248642_2276770 chr3LHet + chr3LHet_2247578_2254308 chr3LHet_2247578_2253758;chr3LHet_2253939_2253991;chr3LHet_2254248_2254308 chr3LHet_2253759_2253938;chr3LHet_2253992_2254247 chr3LHet_2247454_2247577;chr3LHet_2254309_2255059 100.00 100.00 100.00 60.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 86.27 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 71.43 100.00 100.00 89.47 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA Kap3 chrX - chrX_11231294_11231361 chrX_11231297_11231361 chrX_11231362_11231367;chrX_11231160_11231293 100.00 NA 100.00 100.00 NA 100.00 100.00 96.00 96.36 NA NA 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA 97.44 100.00 100.00 100.00 100.00 NA 100.00 100.00 95.00 100.00 100.00 97.06 100.00 100.00 NA 100.00 NA 100.00 NA NA NA NA 100.00 100.00 100.00 100.00 NA NA 97.78 100.00 NA NA K cassette Pvr,I_chr2L_8226604_8228082,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8226607_8227651;chr2L_8226607_8227669 chr2L_8226607_8226928;chr2L_8227151_8227669,chr2L_8227151_8227651 chr2L_8226929_8227150 chr2L_8226458_8226606;chr2L_8227670_8227720 76.74 73.33 67.65 74.29 80.56 66.67 69.49 78.69 76.47 76.67 88.89 77.21 60.98 68.89 77.19 89.06 88.10 82.05 75.51 93.49 72.73 50.00 75.95 77.42 76.74 67.39 82.93 70.00 85.00 87.88 85.96 80.95 67.50 68.18 75.00 86.11 76.74 75.51 71.01 83.53 66.67 68.87 65.71 87.50 70.00 71.74 78.12 82.61 82.76 83.33 79.59 76.47 86.67 94.74 69.01 78.79 78.95 73.68 K cassette CG30193,CG30190,noncoding_8782 chr2R + chr2R_18817843_18819037 chr2R_18817843_18817911;chr2R_18818804_18819037 chr2R_18817912_18818803 chr2R_18817716_18817842;chr2R_18819038_18819238 12.36 11.11 8.00 4.71 10.20 11.76 24.00 7.89 14.66 9.09 5.77 8.89 13.64 8.89 11.76 18.46 13.16 11.54 13.56 11.38 11.54 31.88 12.36 12.90 13.51 14.29 10.94 19.35 28.95 12.07 17.33 15.09 27.87 14.29 14.29 39.13 11.43 8.51 6.82 17.44 27.78 15.89 24.32 9.26 13.64 17.07 11.39 22.58 13.86 18.18 10.67 10.81 8.33 6.76 7.89 9.38 6.25 14.29 N jcn_only_AD Lag1,RI_chrX_6153758_6153930,I_chrX_6153758_6155077,RI_chrX_6153758_6161036,I_chrX_6160907_6161036 chrX - chrX_6153758_6155077;chrX_6153758_6154631;chrX_6153758_6153930;chrX_6153758_6161036;chrX_6153758_6154193;chrX_6153758_6160439 chrX_6153758_6154358 chrX_6153658_6153757;chrX_6161037_6161136 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.02 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG6697 chr3R + chr3R_18887499_18887598 chr3R_18887542_18887598 chr3R_18887599_18888474;chr3R_18887241_18887498 100.00 100.00 97.44 100.00 96.43 100.00 100.00 100.00 100.00 NA 100.00 98.21 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 97.83 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.25 98.15 100.00 100.00 100.00 100.00 100.00 100.00 95.12 100.00 100.00 100.00 100.00 100.00 97.56 97.96 100.00 98.31 100.00 NA 100.00 97.37 100.00 100.00 100.00 100.00 K alternative_acceptor CG10137,CG33116 chr2L + chr2L_19530190_19530913 chr2L_19530190_19530889 chr2L_19530090_19530189;chr2L_19530914_19531028 80.35 NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA 85.71 NA 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 62.50 NA NA NA NA NA NA NA K jcn_only_AA CG17715,RI_chr2L_22742106_22742215,I_chr2L_22742106_22746918 chr2L + chr2L_22742106_22742215 chr2L_22742106_22742160 chr2L_22742093_22742105;chr2L_22742216_22742315 100.00 100.00 98.36 99.29 97.26 98.73 100.00 100.00 100.00 100.00 100.00 98.33 100.00 100.00 99.15 100.00 98.55 100.00 100.00 100.00 100.00 100.00 99.06 100.00 100.00 100.00 98.88 100.00 95.83 98.88 99.38 100.00 100.00 100.00 100.00 100.00 98.72 100.00 98.86 100.00 100.00 98.90 100.00 100.00 100.00 99.15 100.00 99.17 100.00 98.97 100.00 98.46 100.00 95.77 100.00 98.68 100.00 100.00 K intron_retention sta chrX - chrX_1376949_1377143 chrX_1376948_1376949;chrX_1377143_1377144 chrX_1376851_1376948;chrX_1377144_1377223 87.09 88.89 80.00 80.00 92.86 82.35 85.00 85.00 78.38 91.67 88.89 92.86 NA 78.57 92.31 91.67 100.00 90.48 83.33 80.00 90.00 95.45 93.55 75.00 100.00 86.67 92.00 96.77 80.95 87.50 59.52 85.71 88.24 92.00 84.00 85.71 81.08 86.21 92.31 88.89 93.33 96.97 88.24 94.12 78.95 85.19 85.19 85.71 86.49 87.88 87.50 87.50 86.21 75.00 77.78 83.33 81.25 100.00 K intron_retention CG12107 chr2R + chr2R_3562330_3562399 chr2R_3562329_3562330;chr2R_3562399_3562400 chr2R_3562226_3562329;chr2R_3562400_3562960 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4872,Rcp chrX + chrX_16776552_16776642 chrX_16776551_16776552;chrX_16776642_16776643 chrX_16776542_16776551;chrX_16776643_16776831 36.84 NA 35.71 11.76 NA NA 36.36 NA 47.06 NA NA 36.84 NA NA NA 71.43 NA NA NA 37.50 NA NA 50.00 33.33 NA NA 40.00 NA NA NA 41.67 NA NA NA NA NA NA NA NA 66.67 NA 54.55 NA 41.67 30.77 35.71 26.09 NA 37.50 60.00 53.33 NA 25.00 30.77 NA 35.71 5.26 17.65 K alternative_acceptor Rm62,RI_chr3R_1834029_1834277 chr3R - chr3R_1834029_1834272 chr3R_1834032_1834272 chr3R_1834273_1834276;chr3R_1833929_1834028 45.12 60.87 NA 45.24 47.62 53.33 77.36 44.44 50.00 22.64 47.06 68.00 NA 54.55 36.36 25.81 53.33 46.67 52.38 57.58 50.00 NA 66.67 68.00 74.07 73.68 67.86 15.34 39.47 23.91 40.00 15.38 16.07 28.95 40.91 46.34 67.86 59.09 63.64 7.86 42.00 35.56 40.91 15.00 14.04 25.00 66.67 16.53 36.59 33.33 68.75 36.84 15.38 78.57 42.86 45.00 50.00 12.68 K intron_retention SMC1 chr3R + chr3R_19886989_19887044 chr3R_19886988_19886989;chr3R_19887044_19887045 chr3R_19886733_19886988;chr3R_19887045_19887349 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 8.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Crag,I_chrX_8494280_8494352 chrX + chrX_8493497_8493560 chrX_8493496_8493497;chrX_8493560_8493561 chrX_8493064_8493496;chrX_8493561_8494022 0.00 0.00 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 1.30 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG11489,I_chr3L_22273037_22275661 chr3L + chr3L_22276250_22276302;chr3L_22276239_22276302 chr3L_22276245_22276302 chr3L_22276303_22276572;chr3L_22276004_22276238 33.33 40.00 20.00 25.00 NA NA 50.00 18.75 NA NA NA 33.33 NA NA 33.33 37.50 33.33 20.00 NA 15.38 NA 38.46 NA NA NA 16.67 NA NA NA 40.00 25.00 NA 41.67 NA NA NA NA NA NA 33.33 NA 33.33 20.00 55.56 20.00 40.00 28.57 55.56 28.57 NA 38.46 NA NA 25.00 NA 50.00 33.33 27.27 K alternative_donor chic,RI_chr2L_5976783_5980950,I_chr2L_5979705_5979818,I_chr2L_5979705_5979941,RI_chr2L_5979705_5979951,I_chr2L_5979705_5979953,I_chr2L_5979705_5980025,I_chr2L_5979705_5980213,I_chr2L_5979705_5980370,I_chr2L_5979705_5980558,I_chr2L_5979705_5980632,I_chr2L_5979705_5980639,RI_chr2L_5979705_5980734 chr2L - chr2L_5979705_5980952;chr2L_5979705_5980846 chr2L_5979705_5980950 chr2L_5979605_5979704;chr2L_5980953_5981025 69.62 66.67 69.54 72.48 67.03 68.00 67.21 71.43 66.41 75.86 66.25 65.29 71.11 63.64 67.72 64.79 78.48 61.76 72.59 69.62 68.18 68.27 67.74 69.74 68.29 76.29 69.57 74.32 68.60 71.52 75.45 74.81 76.79 69.96 74.04 66.37 68.29 69.57 74.55 77.89 73.08 76.03 67.35 79.53 66.25 76.58 69.23 71.27 66.00 68.33 69.23 74.47 77.55 69.70 77.33 71.43 67.06 69.94 K alternative_acceptor nito,I_chr2R_3852832_3852883 chr2R + chr2R_3850109_3850273 chr2R_3850109_3850252 chr2R_3850045_3850108;chr2R_3850274_3850898 5.26 0.00 0.00 8.70 NA 0.00 6.25 4.76 6.90 NA NA 12.00 NA 0.00 7.14 3.70 NA 6.25 6.67 7.41 0.00 6.06 3.45 5.00 NA 10.53 NA 7.14 0.00 4.55 14.29 NA 5.26 4.55 0.00 60.00 6.25 5.26 NA 4.35 NA 3.23 NA 9.09 NA 6.25 NA 13.79 3.23 NA 4.55 10.53 NA NA 5.56 0.00 NA NA K jcn_only_AD CG5514,RI_chr3R_23768206_23768306,Gp93 chr3R + chr3R_23767856_23768306 chr3R_23768206_23768306 chr3R_23768307_23768406 2.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA K alternative_last_exon pug,CG14683 chr3R + chr3R_6522525_6525472 chr3R_6522525_6523347 chr3R_6525473_6525544 chr3R_6523348_6524698 chr3R_6522391_6522524 97.83 99.31 97.10 96.36 98.94 96.30 98.67 96.64 98.31 96.00 98.85 98.53 89.87 97.94 98.53 100.00 98.84 98.28 96.26 97.83 98.95 94.25 98.30 95.74 96.77 95.96 99.44 97.32 94.48 96.99 97.81 95.92 98.29 97.77 97.58 97.97 99.47 98.59 98.00 95.51 99.39 96.94 97.87 92.19 97.49 97.88 99.37 93.58 97.20 99.36 97.66 98.11 97.60 99.39 97.10 98.95 99.13 96.50 K cassette vap,RI_chrX_15897976_15899352,I_chrX_15897976_15899654,I_chrX_15898011_15899654,I_chrX_15898427_15899017,RI_chrX_15898427_15899654,RI_chrX_15899237_15899352,I_chrX_15899237_15899654 chrX - chrX_15898120_15899352;chrX_15898478_15899352 chrX_15898120_15899017,chrX_15898478_15899017;chrX_15899237_15899352 chrX_15899018_15899236 chrX_15897748_15898119;chrX_15899353_15899365 22.73 22.73 9.52 58.82 20.00 15.79 26.83 27.50 21.43 25.00 36.36 20.51 26.09 22.22 16.67 26.53 20.00 26.32 19.51 33.33 23.81 16.67 16.00 25.00 16.67 9.09 21.05 30.00 20.00 28.57 14.29 30.77 33.33 24.00 28.57 60.00 25.00 23.08 15.38 13.04 20.00 17.24 16.00 26.32 13.64 26.09 7.69 13.46 28.85 15.79 30.00 22.73 NA NA 15.62 16.67 30.77 25.81 K alternative_donor CG4250,I_chr2R_18551419_18551493,E_chr2R_18551558_18551756 chr2R + chr2R_18551380_18551493 chr2R_18551419_18551493 chr2R_18551494_18551557;chr2R_18551319_18551379 0.89 0.73 0.57 0.62 1.15 0.80 0.44 1.22 1.20 2.27 1.20 0.80 1.36 1.42 2.67 0.73 0.99 1.10 1.71 1.05 0.74 2.16 0.82 0.81 0.00 0.45 1.11 0.00 1.57 1.00 0.99 0.53 0.89 1.03 1.61 1.17 1.33 0.66 0.00 0.66 0.78 0.70 0.42 1.95 0.69 0.19 1.05 0.94 0.99 0.70 0.90 0.00 0.48 0.31 0.60 1.10 0.61 1.01 K intron_retention CG9948 chr3L + chr3L_6949263_6949314 chr3L_6949262_6949263;chr3L_6949314_6949315 chr3L_6949194_6949262;chr3L_6949315_6949497 100.00 100.00 87.50 92.00 88.89 100.00 100.00 97.14 96.67 NA 91.67 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 88.89 NA 100.00 NA NA 100.00 NA 93.33 NA 100.00 95.65 NA NA NA NA NA 100.00 NA 96.15 100.00 NA 100.00 85.71 100.00 91.67 100.00 100.00 88.89 NA 100.00 NA 100.00 84.62 100.00 94.44 K intron_retention CG5039 chr3R + chr3R_21504881_21504935 chr3R_21504880_21504881;chr3R_21504935_21504936 chr3R_21504814_21504880;chr3R_21504936_21504997 24.04 NA NA NA NA NA NA 25.00 NA NA NA 15.38 NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 23.08 NA NA NA NA 29.41 NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD pr-set7 chr3R + chr3R_10142132_10142198;chr3R_10142103_10142198 chr3R_10142094_10142198 chr3R_10142199_10142589;chr3R_10142068_10142093 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA K cassette Myo61F,mtacp1,I_chr3L_1330291_1330865,I_chr3L_1330291_1331279,RI_chr3L_1330929_1331041,l(3)02640 chr3L + chr3L_1330291_1331041 chr3L_1330291_1330865;chr3L_1330950_1331041 chr3L_1330866_1330949 chr3L_1330191_1330290;chr3L_1331042_1331054 5.99 4.10 4.70 11.11 5.53 5.24 9.02 6.80 5.71 6.56 7.92 5.05 7.81 6.63 6.69 7.60 7.41 4.73 6.55 4.74 4.74 6.62 3.38 5.39 4.81 7.34 5.70 9.94 19.05 8.37 6.72 6.91 10.42 5.48 4.85 7.03 5.99 4.16 4.61 14.43 15.50 5.75 5.76 7.08 7.76 7.57 2.85 17.37 4.56 5.80 3.83 4.28 3.30 2.99 6.57 4.27 2.86 9.96 K alternative_donor CG9674,I_chr3L_16793055_16793171,I_chr3L_16793055_16793190,I_chr3L_16793055_16800660 chr3L - chr3L_16793055_16793200;chr3L_16793055_16793196 chr3L_16793055_16793173 chr3L_16792955_16793054;chr3L_16793201_16793268 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 NA NA NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA 18.18 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG8478,CREF_chr3R_5589662_5589762 chr3R + chr3R_5589658_5589762;chr3R_5589658_5589747 chr3R_5589658_5589759 chr3R_5589562_5589657;chr3R_5589763_5589862 4.26 3.57 4.44 5.17 4.35 4.35 2.94 6.00 7.27 5.00 6.90 5.88 9.09 0.00 3.03 0.00 6.67 3.85 3.85 2.47 6.25 3.45 8.11 3.45 5.26 8.33 0.00 0.00 4.17 1.92 3.23 2.86 8.06 5.88 4.35 3.33 9.38 2.70 2.44 4.62 3.45 3.33 0.00 3.23 6.52 9.09 3.85 3.12 4.48 5.26 10.26 9.09 4.76 0.00 3.45 2.86 NA 8.77 K intron_retention CREF_chr3R_5589662_5589762,RpS29,CG12947,CG8500 chr3R + chr3R_5606240_5607418 chr3R_5606239_5606240;chr3R_5607418_5607419 chr3R_5605699_5606239;chr3R_5607419_5607949 63.07 NA NA 71.43 NA NA NA NA 75.00 NA NA 61.54 NA NA NA 88.24 NA NA NA 75.00 NA 86.96 55.00 54.55 NA NA NA NA NA 66.67 NA NA 48.00 72.73 NA 73.33 NA 63.64 NA 42.86 NA 75.00 NA NA 30.77 46.15 NA 61.54 62.50 69.23 60.00 NA NA NA NA NA NA 46.15 K jcn_only_AD E_chr4_592469_594231,Ephrin,I_chr4_595055_597604,RI_chr4_596272_596341 chr4 + chr4_592737_594238;chr4_592646_594238;chr4_592593_594238;chr4_592469_594238;chr4_592410_594238;chr4_592798_594238 chr4_592490_594238 chr4_594239_594331;chr4_592404_592409 16.28 18.52 8.70 20.83 0.00 14.29 10.53 17.50 16.28 NA NA 17.72 40.48 15.79 20.59 18.60 15.62 NA 14.89 11.29 6.90 NA 7.41 NA 21.74 15.62 9.09 NA NA NA 22.58 NA NA 12.66 25.00 3.57 NA NA NA 23.33 NA 16.13 17.65 28.57 NA NA NA NA 19.28 NA 21.62 31.82 NA NA 9.09 NA NA NA K alternative_donor ball chr3R - chr3R_22691957_22692048 chr3R_22691957_22692012 chr3R_22690327_22691956;chr3R_22692049_22692377 100.00 100.00 100.00 100.00 100.00 97.96 100.00 98.72 100.00 100.00 100.00 100.00 98.08 100.00 100.00 100.00 100.00 98.11 98.15 100.00 100.00 100.00 98.81 100.00 100.00 100.00 100.00 98.85 100.00 100.00 98.21 100.00 100.00 98.78 98.55 100.00 97.53 100.00 99.13 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention I_chr3L_212783_212843,Kaz1-ORFA,Kaz1-ORFB,Kaz1-ORFA_Kaz1-ORFB chr3L + chr3L_217443_217490 chr3L_217442_217443;chr3L_217490_217491 chr3L_217400_217442;chr3L_217491_217775 2.50 0.00 0.00 3.12 2.94 0.00 0.00 4.08 5.26 0.00 0.00 0.00 0.00 0.00 5.56 2.70 0.00 3.33 0.00 1.82 0.00 18.60 5.56 0.00 5.88 0.00 10.00 0.00 4.17 1.69 4.17 2.90 2.50 0.00 0.00 14.29 2.70 5.26 0.00 3.17 4.35 5.41 0.00 0.00 0.86 3.70 4.26 4.62 4.62 3.70 14.29 0.00 5.71 11.76 2.50 0.00 0.00 1.32 K alternative_acceptor CG8520,I_chr2R_8312580_8312637 chr2R + chr2R_8312580_8312637 chr2R_8312580_8312633 chr2R_8312480_8312579;chr2R_8312638_8312737 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 95.00 NA NA 92.86 NA 100.00 100.00 90.00 100.00 NA 100.00 94.74 90.00 87.50 100.00 93.75 NA 87.50 100.00 NA NA NA 93.75 NA NA 93.75 NA 88.89 100.00 NA 88.89 100.00 90.00 100.00 NA 86.67 NA 100.00 92.86 NA 100.00 100.00 90.00 100.00 100.00 100.00 90.91 88.89 94.44 100.00 K intron_retention CG8128,I_chrX_15591697_15591816 chrX + chrX_15591697_15592355 chrX_15591696_15591697;chrX_15592355_15592356 chrX_15591597_15591696;chrX_15592356_15592720 14.04 13.79 0.00 22.22 NA 6.67 28.57 10.34 18.52 NA NA 26.67 28.57 0.00 17.39 10.34 17.65 19.05 12.50 23.53 0.00 25.00 10.71 11.43 22.22 16.67 13.79 15.15 10.00 11.11 19.05 17.39 12.90 23.33 14.29 18.18 17.39 19.23 12.82 9.09 31.58 16.67 12.50 19.05 22.22 10.53 14.29 9.09 9.68 15.00 11.90 0.00 13.33 13.33 15.00 11.54 6.67 3.33 K intron_retention exba,RI_chr3R_1423238_1423301,snoRNA:Psi28S-3571,I_chr3R_1425087_1425925,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1423238_1423493 chr3R_1423237_1423238;chr3R_1423493_1423494 chr3R_1423138_1423237;chr3R_1423494_1423659 0.00 0.00 0.00 0.31 0.00 0.00 0.29 0.31 0.40 0.00 0.00 0.49 0.54 0.00 0.00 0.31 0.00 0.00 0.20 0.00 0.00 0.00 0.23 0.00 0.85 0.00 0.00 0.76 0.00 0.00 0.12 0.00 0.00 0.56 0.00 0.52 0.00 0.00 0.00 0.00 0.97 0.26 0.00 0.00 0.00 0.00 0.00 1.21 0.27 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 2.94 K intron_retention I_chr2L_12099367_12099435,Aats-thr chr2L + chr2L_12103835_12104491 chr2L_12103834_12103835;chr2L_12104491_12104492 chr2L_12103774_12103834;chr2L_12104492_12104552 8.25 6.85 11.44 12.62 3.30 4.88 12.80 8.64 7.24 8.54 13.71 6.70 7.53 9.66 9.44 11.79 12.05 9.33 8.25 5.67 11.17 3.43 8.07 9.28 21.69 14.36 13.33 7.39 9.86 6.86 9.46 3.59 8.45 9.87 7.23 14.73 7.25 4.63 7.14 6.33 14.44 8.26 10.62 8.59 7.14 6.10 9.02 3.94 7.44 4.76 10.69 8.57 6.41 4.71 7.72 7.61 7.76 5.84 N alternative_donor Aldolase,I_chr3R_22083764_22086684 chr3R - chr3R_22082030_22082195;chr3R_22082030_22082575 chr3R_22082030_22082256 chr3R_22081992_22082029 12.50 20.00 0.00 28.57 25.00 25.00 10.00 11.11 7.14 7.14 NA 40.00 12.50 NA 0.00 11.11 25.00 0.00 0.00 8.33 0.00 14.29 12.50 12.50 20.00 0.00 10.00 19.35 28.00 45.45 10.00 16.67 0.00 10.00 20.00 0.00 0.00 0.00 14.29 58.82 15.38 15.38 16.67 0.00 50.00 0.00 16.67 16.67 11.11 10.00 0.00 16.67 NA 25.00 16.67 44.44 0.00 71.43 K jcn_only_AD CG7609,ATPsyn-gamma,I_chr3R_25574492_25574541 chr3R - chr3R_25574492_25574545 chr3R_25574492_25574541 chr3R_25574392_25574491;chr3R_25574546_25574564 1.62 1.06 1.74 1.77 1.33 2.22 2.97 1.64 1.45 1.35 2.69 1.62 1.38 1.31 1.12 1.24 0.60 2.14 1.96 1.60 1.72 1.30 2.70 0.54 1.89 1.05 2.38 0.00 0.00 0.00 1.43 3.35 0.42 0.86 3.70 0.00 2.42 2.04 3.31 1.78 2.56 1.52 1.64 1.25 0.42 0.69 0.81 0.00 0.94 3.92 3.26 2.06 2.00 9.09 0.95 2.06 1.77 1.92 K cassette CG2316,I_chr4_209150_214298,I_chr4_209369_210623,I_chr4_209875_213969,RI_chr4_209875_214450,RI_chr4_210688_211927,I_chr4_210688_213991,I_chr4_210688_214019,I_chr4_210688_214049,RI_chr4_210688_214450 chr4 - chr4_210688_213969;chr4_209875_213969;chr4_210688_214298;chr4_209875_214298 chr4_210688_211934,chr4_209875_211934;chr4_212013_213969,chr4_212013_214298 chr4_211935_212012 chr4_209775_209874;chr4_214299_214311 6.46 NA NA 4.76 NA NA 3.85 5.88 7.69 NA NA 10.71 NA 7.14 7.14 6.25 NA NA 0.00 3.70 NA NA NA NA NA NA NA NA NA NA 6.67 NA NA 5.56 NA NA NA NA NA NA NA 9.52 0.00 NA NA NA NA NA 8.33 NA NA NA NA NA 7.69 NA NA NA K jcn_only_AD PGRP-LC chr3L + chr3L_9338168_9340739;chr3L_9338225_9340739 chr3L_9340350_9340739 chr3L_9340740_9340757 17.52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 19.05 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.00 NA NA NA NA NA NA NA NA NA K cassette caz,noncoding_24110,RI_chrX_16183147_16183258,RI_chrX_16183356_16185973 chrX + chrX_16182991_16183258 chrX_16182991_16183059;chrX_16183192_16183258 chrX_16183060_16183191 chrX_16182887_16182990;chrX_16183259_16183355 92.45 93.25 90.82 95.77 94.87 92.00 93.27 92.61 95.12 89.06 91.94 89.08 91.04 93.81 92.37 92.45 95.40 94.79 94.90 91.36 88.16 86.16 87.46 90.77 88.82 88.75 94.80 94.89 79.80 87.73 90.13 88.10 96.24 93.87 91.98 85.19 90.48 93.62 93.14 93.09 90.53 95.04 93.18 98.20 93.14 91.90 95.81 92.17 92.75 92.43 89.88 92.73 97.01 93.83 91.49 94.23 93.69 90.78 K intron_retention CG31150,Hmt-1 chr3R - chr3R_11670487_11670543 chr3R_11670486_11670487;chr3R_11670543_11670544 chr3R_11670188_11670486;chr3R_11670544_11671142 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.97 0.52 1.59 0.00 0.36 0.00 0.00 0.00 1.60 0.68 0.00 0.47 0.23 0.00 0.00 0.90 0.00 0.00 0.00 0.88 1.32 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.48 0.00 0.96 0.00 1.15 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.27 0.31 0.00 0.00 0.00 0.00 0.48 0.44 0.00 0.00 K intron_retention CycH,CG7407 chr3L + chr3L_21815698_21815756 chr3L_21815697_21815698;chr3L_21815756_21815757 chr3L_21815496_21815697;chr3L_21815757_21815985 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 3.85 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG13124,I_chr2L_9905292_9905551,I_chr2L_9905292_9905677,RI_chr2L_9907784_9908405,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9905053_9905137 chr2L_9905052_9905053;chr2L_9905137_9905138 chr2L_9904827_9905052;chr2L_9905138_9905241 41.18 41.18 34.21 63.64 50.00 46.15 76.92 57.14 52.08 41.67 63.64 25.68 66.67 45.00 39.29 65.00 43.75 32.14 44.00 37.21 47.37 16.38 47.92 50.00 57.69 63.16 42.22 40.00 27.78 35.48 47.62 28.12 34.78 38.24 40.00 58.06 48.08 35.29 39.58 31.67 48.48 45.65 40.91 28.57 22.45 38.33 28.12 25.53 32.14 41.18 46.15 47.37 33.33 36.67 48.48 39.13 50.00 29.79 K alternative_acceptor l(1)G0222,FI_chrX_17466478_17466552,I_chrX_17473084_17473137 chrX - chrX_17466478_17466552 chrX_17466493_17466552 chrX_17466553_17466652;chrX_17466378_17466477 95.00 94.44 95.83 88.57 94.44 92.00 84.44 97.73 88.06 92.31 87.50 93.33 92.31 96.00 90.32 91.89 95.83 95.24 96.30 94.83 95.45 94.44 100.00 97.62 95.24 92.00 90.24 95.00 95.00 93.55 100.00 93.75 93.55 91.11 97.06 95.24 91.43 96.97 90.32 95.12 100.00 96.36 95.24 100.00 100.00 97.14 94.74 100.00 97.87 96.30 92.45 96.15 80.95 93.75 91.18 97.50 95.35 90.00 K jcn_only_AD rin,I_chr3R_9476825_9476895 chr3R + chr3R_9472923_9473104;chr3R_9473004_9473104 chr3R_9472992_9473104 chr3R_9473105_9473268;chr3R_9472709_9472922 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.31 0.00 0.00 2.33 0.00 0.00 0.83 0.00 0.33 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.49 0.00 0.00 0.00 K alternative_donor Gpo-1,I_chr2R_11747621_11747699,EI_chr2R_11747445_11747699,I_chr2R_11749758_11750187,I_chr2R_11756325_11756380 chr2R - chr2R_11748259_11749386 chr2R_11748259_11749143 chr2R_11748106_11748258;chr2R_11749387_11749428 72.08 80.00 80.00 83.33 NA NA 63.64 83.33 85.71 62.50 NA 100.00 NA NA 100.00 85.71 NA NA NA 88.89 NA 92.31 63.64 66.67 77.78 80.00 71.43 72.73 64.29 54.55 77.78 53.85 53.33 77.78 83.33 55.00 87.50 80.00 50.00 56.25 58.82 90.00 NA 47.06 53.85 56.25 40.00 66.67 62.50 NA 71.43 80.00 NA 41.67 100.00 85.71 NA 69.23 K intron_retention CtBP chr3R + chr3R_8837895_8845063 chr3R_8837894_8837895;chr3R_8845063_8845064 chr3R_8837730_8837894;chr3R_8845064_8845536 100.00 100.00 100.00 98.25 100.00 97.30 100.00 100.00 100.00 100.00 100.00 98.36 100.00 98.15 100.00 100.00 100.00 100.00 100.00 98.59 100.00 100.00 97.73 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.91 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA 92.86 K intron_retention RpS14a,I_chrX_7827880_7828041,F_chrX_7841357_7841447 chrX + chrX_7827880_7828041 chrX_7827879_7827880;chrX_7828041_7828042 chrX_7827780_7827879;chrX_7828042_7828141 92.86 NA NA 91.67 NA NA 95.45 81.82 94.12 NA NA 73.33 NA NA NA 92.86 NA NA NA 90.00 NA NA NA NA NA NA 91.67 92.86 100.00 NA 93.33 NA NA 90.00 NA 100.00 NA NA NA 100.00 NA 90.00 NA NA NA NA NA NA 92.86 NA NA NA NA NA NA NA 53.85 NA K intron_retention REI_chrX_16172581_16177702,CG3560 chrX + chrX_16180646_16180708 chrX_16180645_16180646;chrX_16180708_16180709 chrX_16180598_16180645;chrX_16180709_16181067 0.26 0.00 0.00 0.24 0.40 0.00 0.63 0.39 0.56 0.66 0.61 0.27 0.81 0.00 0.43 0.68 0.42 0.00 0.61 0.48 0.00 1.68 0.00 0.00 0.27 0.00 0.88 2.06 0.99 0.00 0.22 0.00 0.00 0.57 0.00 0.28 0.33 0.00 0.31 0.15 0.00 0.41 0.00 0.00 0.00 0.00 0.53 0.00 0.68 0.45 0.00 0.00 0.00 0.26 1.20 0.28 0.00 0.00 N intron_retention mfrn,I_chr3R_23770737_23770817,I_chr3R_23771063_23771153,I_chr3R_23771063_23772599 chr3R - chr3R_23771063_23771137 chr3R_23771062_23771063;chr3R_23771137_23771138 chr3R_23770974_23771062;chr3R_23771138_23771527 63.16 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 63.16 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention retm,I_chr2L_6451015_6451364,I_chr2L_6459995_6460559,I_chr2L_6464140_6465326 chr2L - chr2L_6452056_6452121 chr2L_6452055_6452056;chr2L_6452121_6452122 chr2L_6451797_6452055;chr2L_6452122_6453057 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 4.76 0.00 0.00 NA 0.00 0.00 NA 18.75 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon CG42231,chif,CaBP1 chr2L - chr2L_16343305_16351926 chr2L_16349473_16351926 chr2L_16342428_16343304 chr2L_16343592_16349472 chr2L_16351927_16352093 69.86 73.81 73.47 53.19 65.79 67.44 42.17 59.14 67.35 81.82 62.86 67.07 82.35 66.67 68.00 77.61 76.92 76.09 73.08 74.51 67.57 62.32 81.94 72.13 80.00 59.18 56.34 63.16 88.89 74.58 70.69 70.73 78.05 68.13 63.79 68.18 77.19 75.76 78.57 73.00 63.46 66.67 73.17 75.44 58.49 70.59 64.44 82.95 72.73 60.42 69.86 66.67 77.78 61.11 70.97 64.44 50.98 68.24 K intron_retention par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,EF_chr2R_15349994_15351814,F_chr2R_15349994_15351846,noncoding_8037,FI_chr2R_15350149_15351814,I_chr2R_15350437_15351814,I_chr2R_15350437_15351825,I_chr2R_15350905_15351814,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15350437_15351846 chr2R_15350436_15350437;chr2R_15351846_15351847 chr2R_15350337_15350436;chr2R_15351847_15351914 69.40 NA NA 66.67 NA NA 83.33 75.00 69.57 NA NA 69.23 NA 76.92 50.00 76.47 81.82 NA 66.67 68.75 NA 66.67 NA NA NA 76.92 NA NA 54.55 NA 50.00 NA NA 60.87 NA NA NA NA NA NA NA 78.57 75.00 NA NA NA NA NA 50.00 NA NA NA NA NA 77.78 NA NA NA K mutually_exclusive shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9754481_9755660,chr2R_9755855_9757364 chr2R_9754481_9754629,chr2R_9754809_9757364 chr2R_9755661_9755854 chr2R_9754630_9754808 chr2R_9754381_9754480;chr2R_9757365_9757464 0.88 1.21 0.47 1.63 1.03 1.34 1.97 1.12 1.27 0.67 1.10 0.55 3.07 0.55 0.84 0.60 0.98 1.27 0.00 0.85 0.00 0.87 1.83 0.85 0.75 0.97 1.32 10.06 1.36 0.90 0.40 0.68 0.83 0.88 0.84 1.08 1.06 0.52 0.99 0.81 0.35 0.77 1.65 1.35 0.92 0.53 1.03 0.16 1.33 0.57 1.95 0.78 0.46 1.02 0.37 0.80 1.21 0.22 K alternative_donor Rab23,I_chr3R_1508710_1508882 chr3R - chr3R_1508710_1510597;chr3R_1508710_1511119 chr3R_1508710_1508882 chr3R_1508610_1508709;chr3R_1511120_1511186 33.33 50.00 20.00 33.33 16.67 100.00 20.00 10.00 16.67 33.33 18.18 22.22 20.00 33.33 33.33 28.57 25.00 25.00 25.00 10.53 33.33 50.00 33.33 33.33 50.00 16.67 50.00 50.00 50.00 33.33 11.11 33.33 33.33 25.00 50.00 50.00 33.33 50.00 33.33 13.33 100.00 18.18 25.00 25.00 NA 20.00 50.00 50.00 13.33 50.00 66.67 50.00 25.00 NA 12.50 50.00 33.33 20.00 K jcn_only_AA CG4065,RI_chr2R_20024231_20024292,I_chr2R_20024873_20024921 chr2R - chr2R_20025292_20025383 chr2R_20025295_20025383 chr2R_20025384_20025494;chr2R_20024922_20025291 79.34 70.97 NA NA NA NA NA NA 75.00 NA NA 66.67 NA NA NA NA NA NA NA 84.44 NA 85.37 79.52 85.51 87.80 NA 76.67 80.00 NA 88.46 NA NA NA NA 75.00 80.56 80.00 72.97 80.36 72.50 NA 85.71 NA 60.00 78.57 72.73 73.33 NA 73.08 83.78 78.00 79.17 77.42 80.85 NA 81.58 80.00 NA K alternative_acceptor l(3)05822,I_chr3R_14115739_14115801 chr3R - chr3R_14115739_14115801 chr3R_14115743_14115801 chr3R_14115802_14115901;chr3R_14115639_14115738 98.77 98.21 98.21 98.57 100.00 100.00 100.00 98.77 98.99 97.87 98.08 98.84 97.83 97.96 98.11 98.39 100.00 100.00 98.18 98.90 95.74 100.00 98.18 98.15 100.00 98.36 100.00 93.33 98.88 100.00 97.92 100.00 100.00 100.00 98.00 100.00 98.61 100.00 98.41 97.59 100.00 99.07 97.56 98.39 96.81 98.89 100.00 100.00 98.11 98.48 100.00 97.62 100.00 100.00 100.00 96.23 98.33 99.25 K jcn_only_AD R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8088371_8089184;chr2L_8088517_8089184 chr2L_8088454_8089184 chr2L_8089185_8089284;chr2L_8088362_8088370 86.11 NA 86.11 73.33 NA NA 75.51 83.67 82.35 NA NA 92.98 77.50 87.50 92.31 81.31 NA 80.95 81.40 93.98 81.82 NA 85.19 NA 86.36 76.67 NA NA NA NA 88.57 NA 81.82 79.45 100.00 91.30 NA NA NA 96.97 82.61 85.00 83.33 86.36 NA 96.15 NA NA 90.43 NA 92.31 NA 90.00 NA 89.29 86.96 NA NA K intron_retention Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16112732_16112791 chr3L_16112731_16112732;chr3L_16112791_16112792 chr3L_16112558_16112731;chr3L_16112792_16112917 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.97 1.22 3.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.33 4.17 0.00 0.00 0.54 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Ranbp16,I_chrX_15826655_15827277 chrX - chrX_15827572_15827638 chrX_15827572_15827633 chrX_15827176_15827571;chrX_15827639_15827691 100.00 96.00 96.97 93.48 100.00 95.83 94.34 100.00 98.77 100.00 95.83 100.00 95.83 96.00 89.66 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 NA NA 100.00 NA NA 96.00 100.00 100.00 NA 100.00 98.15 NA NA 100.00 NA 100.00 98.21 NA 98.31 100.00 97.30 NA 100.00 NA 100.00 97.96 NA 100.00 NA NA NA 100.00 NA NA NA K jcn_only_AA CG1021,I_chr3R_2217711_2231099,I_chr3R_2217711_2231390,RI_chr3R_2217711_2231463,I_chr3R_2217742_2218601,I_chr3R_2217742_2219453,I_chr3R_2218465_2231390,RI_chr3R_2218465_2231463,I_chr3R_2218682_2231463,I_chr3R_2219634_2231390,I_chr3R_2231383_2231463 chr3R - chr3R_2218465_2218601;chr3R_2217711_2218601 chr3R_2217742_2218601 chr3R_2218602_2218681;chr3R_2217642_2217710 2.38 4.76 0.00 0.00 NA NA NA 0.00 0.00 NA NA 2.56 0.00 NA 3.57 0.00 NA NA NA 4.88 0.00 2.56 2.44 2.00 5.88 9.09 0.00 5.71 NA NA NA NA 0.00 2.13 NA 11.11 6.06 2.86 5.77 0.00 NA 3.12 NA 0.00 NA NA 3.03 NA 2.78 1.85 2.63 0.00 2.38 NA 0.00 0.00 0.00 8.70 K alternative_acceptor Tre1,I_chrX_5569518_5570588 chrX - chrX_5568186_5568254 chrX_5568207_5568254 chrX_5568255_5568742;chrX_5567863_5568185 0.34 0.70 0.00 0.53 0.68 0.00 0.51 0.00 1.11 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.49 0.00 1.01 0.00 0.32 0.00 1.06 0.00 0.00 0.00 0.77 0.00 0.00 0.53 0.50 0.53 1.07 0.27 0.00 0.88 0.34 1.21 0.90 0.00 0.00 0.37 0.82 0.70 0.58 0.37 0.89 1.27 0.79 0.00 0.88 0.00 0.00 0.00 0.36 K jcn_only_AA chrb,I_chr3L_11481702_11483304 chr3L + chr3L_11488057_11488131 chr3L_11488057_11488116 chr3L_11487979_11488056;chr3L_11488132_11489796 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA NA NA NA NA 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 96.97 NA NA NA 100.00 NA NA NA NA 100.00 100.00 NA NA NA 100.00 100.00 100.00 NA 100.00 NA 100.00 NA NA NA 100.00 100.00 NA 100.00 100.00 NA NA NA NA NA NA K jcn_only_AA Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4847655_4847757;chrX_4847655_4848149 chrX_4847655_4848167 chrX_4847526_4847654;chrX_4848168_4848168 13.79 12.00 18.42 5.26 21.62 17.65 28.89 10.87 19.78 15.91 16.67 12.20 NA 14.29 16.22 9.30 10.26 NA 12.50 6.76 16.67 17.02 19.18 15.71 14.89 NA 8.89 6.25 8.11 18.64 13.79 16.13 8.82 8.77 11.11 7.69 19.54 17.39 21.62 6.25 8.33 9.43 9.09 17.31 11.11 8.77 22.92 12.00 9.80 19.23 20.59 6.25 NA 13.16 9.09 19.35 20.00 15.69 K alternative_donor nudE chr3L + chr3L_9892498_9892825;chr3L_9892375_9892825 chr3L_9892456_9892825 chr3L_9892826_9893184;chr3L_9892344_9892374 92.86 85.71 100.00 93.75 NA NA 87.50 92.86 100.00 NA NA 91.67 88.89 87.50 NA 92.00 87.50 100.00 88.89 84.21 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 94.12 NA NA NA NA NA 90.91 83.33 100.00 100.00 NA NA 100.00 100.00 NA 94.12 NA 85.71 NA NA NA 100.00 NA NA NA K alternative_acceptor Thd1,I_chr4_572026_572616,RI_chr4_574364_578068 chr4 - chr4_572007_572616 chr4_572026_572616 chr4_572617_572665;chr4_571926_572006 0.00 0.00 0.00 2.17 2.78 0.00 0.00 0.85 0.85 4.17 2.94 1.27 1.59 2.38 0.00 2.33 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 3.85 1.92 0.00 3.70 0.00 2.50 1.72 0.00 3.33 0.85 0.00 0.00 4.35 0.00 0.00 0.00 NA 0.79 0.00 0.00 NA 0.00 NA 2.56 1.00 0.00 2.70 0.00 NA NA 0.00 0.00 0.00 0.00 K jcn_only_AA Lag1,RI_chrX_6153758_6153930,I_chrX_6153758_6155077,RI_chrX_6153758_6161036,I_chrX_6160751_6160887,I_chrX_6160907_6161036 chrX - chrX_6160907_6161036;chrX_6160751_6161036 chrX_6153758_6161036 chrX_6161037_6161136 3.05 3.45 0.00 13.89 8.00 4.55 0.00 1.85 3.08 3.85 26.92 1.45 2.70 2.38 0.00 3.33 5.26 5.26 7.14 1.39 3.45 3.51 2.33 0.00 NA 1.39 6.06 NA 2.44 0.00 1.85 10.71 2.56 3.61 7.32 0.00 4.76 7.41 3.57 7.14 2.50 7.14 4.00 0.00 3.03 0.00 2.56 1.22 2.11 7.32 3.12 NA 0.00 14.29 0.00 6.67 0.00 0.00 K intron_retention Ncc69,I_chr3L_12363433_12363982,I_chr3L_12364701_12364860 chr3L - chr3L_12363433_12364643 chr3L_12363432_12363433;chr3L_12364643_12364644 chr3L_12363335_12363432;chr3L_12364644_12364700 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 1.41 0.00 0.00 0.00 5.26 0.00 0.00 3.92 0.00 0.00 0.00 2.15 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD shi,RI_chrX_15786633_15786860,RE_chrX_15793108_15795563 chrX + chrX_15786474_15786860;chrX_15786603_15786860;chrX_15786615_15786860;chrX_15786200_15786860;chrX_15786394_15786860 chrX_15786285_15786860 chrX_15786861_15786960;chrX_15786192_15786199 23.53 10.00 34.38 25.86 47.62 28.57 8.08 19.48 29.09 NA 27.78 22.22 25.49 15.56 24.32 13.04 30.00 NA 33.85 36.11 48.65 NA 0.00 0.00 3.70 21.43 2.22 NA NA 19.51 13.73 NA 38.10 22.73 3.23 13.64 4.35 0.00 NA 23.53 22.22 35.82 25.00 29.27 NA 25.71 NA 44.23 24.29 NA 4.44 0.00 NA NA 29.27 NA NA 66.67 K intron_retention CHIP chr2L + chr2L_10438240_10438300 chr2L_10438239_10438240;chr2L_10438300_10438301 chr2L_10438041_10438239;chr2L_10438301_10438442 0.00 0.00 0.00 0.00 0.00 3.70 1.82 0.00 5.13 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.85 0.00 NA 0.00 0.00 2.63 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32343,I_chr3L_326540_326703,RI_chr3L_326725_326866 chr3L - chr3L_325695_325754 chr3L_325694_325695;chr3L_325754_325755 chr3L_325008_325694;chr3L_325755_325824 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 2.94 0.00 0.00 4.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.41 13.04 0.00 0.00 0.00 0.00 1.92 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13165623_13166434 chrX_13165623_13166422 chrX_13165515_13165622;chrX_13166435_13166489 0.00 NA NA 0.00 NA NA 0.00 20.00 0.00 NA NA 0.00 NA 33.33 NA 25.45 NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K intron_retention CaMKII,I_chr4_1059085_1060638,I_chr4_1059085_1065781,RI_chr4_1061742_1064093,RI_chr4_1061742_1065781,I_chr4_1061989_1065781,RI_chr4_1063745_1065781,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,RI_chr4_1071489_1071968,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1059061_1060638 chr4_1059060_1059061;chr4_1060638_1060639 chr4_1059054_1059060;chr4_1060639_1060704 13.81 NA NA 0.00 NA NA 41.67 14.29 17.65 NA NA 7.14 NA NA NA 13.33 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA 24.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD Cip4,I_chr3L_4363128_4363769,I_chr3L_4363386_4363987 chr3L - chr3L_4324451_4324921 chr3L_4324451_4324861 chr3L_4324284_4324450;chr3L_4324922_4324996 58.23 52.86 37.74 57.00 45.24 58.33 61.60 57.95 61.64 90.00 36.36 50.00 72.00 46.67 37.04 47.17 57.14 77.50 46.51 65.81 50.00 75.00 55.83 58.23 35.06 45.76 53.33 50.00 86.05 66.20 48.00 62.16 56.60 55.42 72.50 62.26 63.64 65.96 54.17 46.24 69.57 54.69 47.73 63.16 85.71 67.61 69.35 76.29 57.66 56.82 61.39 66.67 77.14 66.00 33.93 74.36 67.50 84.75 K alternative_donor f,F_chrX_17172853_17172983 chrX + chrX_17172177_17172983 chrX_17172853_17172983 chrX_17172984_17173083;chrX_17172155_17172176 9.09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG4686 chr3R + chr3R_15690389_15690710 chr3R_15690648_15690710 chr3R_15690711_15691019;chr3R_15690320_15690388 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG1746,I_chr3R_27044771_27044867,I_chr3R_27044771_27044990,I_chr3R_27044771_27045027,RI_chr3R_27044771_27045110,I_chr3R_27044771_27045132,RI_chr3R_27044771_27045188,I_chr3R_27044771_27045193,RI_chr3R_27044771_27045268 chr3R - chr3R_27044771_27044867;chr3R_27044771_27045188;chr3R_27044771_27045257;chr3R_27044771_27045132;chr3R_27044771_27045027;chr3R_27044771_27045110;chr3R_27044771_27044990;chr3R_27044771_27044895 chr3R_27044771_27044831 chr3R_27044671_27044770;chr3R_27045258_27045273 0.45 0.45 0.24 0.26 0.00 0.25 0.85 0.11 0.39 1.43 0.27 0.37 0.34 0.32 0.17 0.58 0.00 0.63 0.38 0.38 0.00 1.12 3.70 6.45 0.00 0.38 9.52 1.79 2.11 1.01 0.36 0.30 0.79 0.45 1.92 1.79 2.38 6.25 2.86 1.40 1.56 0.28 0.24 2.88 0.24 0.43 3.85 0.27 0.20 4.00 9.52 4.17 0.00 6.25 0.17 5.56 1.89 0.50 K jcn_only_AA Imp,I_chrX_10699490_10700695,RI_chrX_10699665_10700501,RI_chrX_10699665_10700695 chrX - chrX_10699665_10700501;chrX_10699547_10700501 chrX_10699503_10700501 chrX_10700502_10700547;chrX_10699299_10699502 66.07 NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA 57.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG17082,I_chr2R_632143_635290,R_chr2R_642176_644740,I_chr2R_644094_644145,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_631984_636726;chr2R_632083_636726;chr2R_631971_636726;chr2R_632143_636726 chr2R_631907_636726 chr2R_636727_636891;chr2R_631902_631906 58.33 NA NA 50.00 NA NA 50.00 58.33 70.59 NA NA 66.67 40.00 80.00 NA 50.00 87.50 NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 58.33 NA NA NA NA NA NA NA 61.54 NA NA NA NA NA NA 58.33 NA NA NA NA NA NA NA NA NA K intron_retention lok,RI_chr2L_20063248_20063377 chr2L + chr2L_20062013_20062147 chr2L_20062012_20062013;chr2L_20062147_20062148 chr2L_20061782_20062012;chr2L_20062148_20062305 28.57 33.33 24.24 41.18 26.32 16.67 33.33 20.63 30.61 26.32 28.57 36.59 36.84 32.00 29.17 22.45 37.50 27.27 30.77 28.99 17.39 27.59 12.50 31.03 22.73 44.44 24.00 30.77 13.16 23.26 19.51 31.58 23.53 26.32 33.33 14.58 40.00 26.09 26.92 12.77 33.33 21.43 40.91 31.03 33.33 33.33 29.63 30.56 26.15 16.67 21.05 33.33 20.00 26.09 29.73 29.41 28.57 27.42 K alternative_last_exon Mvl,RI_chr3R_16877854_16877923,E_chr3R_16880765_16881066 chr3R - chr3R_16878968_16881066,chr3R_16879341_16881066;chr3R_16879657_16881066;chr3R_16880764_16881066 chr3R_16877965_16881066 chr3R_16878926_16878967;chr3R_16879584_16879656;chr3R_16880370_16880763 chr3R_16877097_16877964 chr3R_16881067_16881137 89.22 92.00 85.96 87.91 89.74 93.62 88.00 75.24 90.00 97.87 85.71 88.51 85.71 84.00 87.50 77.22 78.57 86.36 80.70 84.62 87.80 90.54 86.89 92.31 91.18 86.84 91.94 75.00 96.43 88.89 88.89 94.92 91.04 85.06 88.64 90.20 93.22 87.80 90.16 85.39 93.75 87.38 89.47 94.29 91.43 94.87 91.53 93.67 89.22 87.72 95.16 91.67 91.11 86.05 81.97 92.31 90.67 93.69 K jcn_only_AD CG3714,I_chr2L_4190825_4191774,I_chr2L_4192969_4193324,I_chr2L_4195905_4196470,RI_chr2L_4196780_4197951,I_chr2L_4196815_4197306,I_chr2L_4196815_4197951 chr2L - chr2L_4192969_4193324 chr2L_4192969_4193309 chr2L_4192958_4192968;chr2L_4193325_4193424 97.92 NA 100.00 95.45 NA NA 100.00 90.48 100.00 NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA 98.18 95.00 96.15 NA NA 91.67 95.00 98.89 91.67 100.00 100.00 100.00 NA 100.00 96.88 100.00 100.00 96.88 97.92 96.30 92.86 NA 98.41 93.55 100.00 NA 91.94 NA 100.00 93.94 NA NA NA NA 96.77 NA 95.24 K jcn_only_AD sop,RI_chr2L_9897132_9897211 chr2L - chr2L_9897132_9897472 chr2L_9897132_9897211 chr2L_9897032_9897131;chr2L_9897473_9897825 3.70 1.12 0.55 6.07 0.95 1.55 8.84 0.75 2.60 6.00 5.94 1.05 3.08 2.20 1.08 0.88 3.61 7.84 2.07 1.02 3.25 2.17 7.04 6.38 5.26 5.15 16.28 3.70 37.50 NA 10.62 NA 5.41 4.93 9.52 NA 1.34 2.44 4.03 10.34 10.00 0.45 2.78 17.65 0.25 11.11 1.03 4.76 3.17 8.75 NA 8.33 1.39 11.86 1.10 8.93 11.29 3.57 K intron_retention RhoGAP18B chrX - chrX_19047302_19047377 chrX_19047301_19047302;chrX_19047377_19047378 chrX_19047061_19047301;chrX_19047378_19047520 88.52 88.24 82.61 90.85 90.10 88.79 84.47 92.40 89.63 86.23 86.18 88.74 91.46 90.29 85.92 90.14 83.65 73.21 87.90 88.93 84.91 81.50 90.34 91.90 92.91 98.57 94.81 91.08 92.83 91.30 87.61 88.44 90.02 86.90 90.64 90.26 80.00 83.63 86.81 81.47 93.53 88.80 90.22 82.66 76.77 87.66 85.29 84.01 88.84 90.73 90.67 81.69 88.52 90.38 87.77 79.90 87.16 83.52 K alternative_donor CG11984,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4839215_4840394;chr3R_4839215_4840474 chr3R_4839215_4840589 chr3R_4839038_4839214;chr3R_4840590_4840610 11.80 10.00 36.36 33.33 28.57 11.11 0.00 19.05 26.67 16.67 30.77 26.67 45.45 23.08 33.33 5.88 27.27 27.27 9.09 23.08 27.27 4.17 9.09 20.00 NA 35.71 8.33 18.18 0.00 0.00 7.14 22.22 5.88 35.29 12.50 0.00 7.69 16.67 NA 11.11 7.69 43.75 23.08 0.00 43.75 0.00 0.00 8.33 37.04 10.00 9.09 10.00 11.11 NA 20.00 10.00 11.11 0.00 K intron_retention CG8449,RI_chr3R_9096143_9096213,RI_chr3R_9096632_9096844 chr3R - chr3R_9096153_9096213 chr3R_9096152_9096153;chr3R_9096213_9096214 chr3R_9096084_9096152;chr3R_9096214_9096281 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 9.68 5.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention E_chr2L_20647810_20648188,CG2614 chr2L + chr2L_20658602_20658668 chr2L_20658601_20658602;chr2L_20658668_20658669 chr2L_20658462_20658601;chr2L_20658669_20659220 0.00 1.61 0.00 12.24 0.00 0.00 0.00 0.00 1.28 0.00 0.00 2.27 0.00 4.76 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 5.26 0.00 0.00 4.44 2.56 0.00 0.00 0.00 0.00 0.00 0.00 4.88 0.00 0.00 0.00 1.04 3.57 1.41 5.26 0.00 0.00 0.00 0.00 4.44 2.88 1.33 1.27 0.00 0.00 1.96 0.00 0.00 1.18 2.78 K intron_retention CG7837 chr3R - chr3R_25622473_25622530 chr3R_25622472_25622473;chr3R_25622530_25622531 chr3R_25621410_25622472;chr3R_25622531_25622606 0.00 0.00 0.00 6.67 NA 0.00 3.85 0.00 0.00 NA NA 0.00 0.00 NA 0.00 4.35 0.00 0.00 NA 6.06 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 5.00 0.00 0.00 K intron_retention cni,RI_chr2L_16309575_16309999,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16310144_16310266 chr2L_16310143_16310144;chr2L_16310266_16310267 chr2L_16310000_16310143;chr2L_16310267_16310379 2.02 3.23 2.34 4.48 0.00 1.11 2.81 2.23 2.58 1.96 0.81 2.53 0.00 2.27 0.94 1.88 4.26 1.75 3.51 1.24 2.02 4.41 1.31 1.53 0.00 1.10 1.80 3.64 3.64 1.59 3.09 0.00 0.00 1.89 0.00 0.00 3.64 2.25 1.41 3.65 0.00 2.84 2.90 1.77 0.00 2.61 2.03 0.00 2.17 0.91 2.67 2.59 2.11 2.61 2.31 5.30 0.00 0.00 K alternative_donor I_chr3R_23069667_23070365,CG5987 chr3R - chr3R_23074201_23074263 chr3R_23074201_23074259 chr3R_23074073_23074200;chr3R_23074264_23074804 0.00 NA 0.00 2.53 NA NA NA 2.94 0.00 NA NA NA NA NA NA 1.79 NA NA NA 0.00 NA 0.00 0.00 NA NA NA 6.67 NA 0.00 4.35 NA 2.38 0.00 NA 0.00 NA 0.00 NA 5.56 2.94 0.00 3.85 NA NA 3.45 0.00 4.76 0.00 0.00 6.45 NA NA NA 0.00 0.00 0.00 4.76 1.59 K intron_retention RI_chr2R_9104206_9104265,Fsn,CG4663 chr2R - chr2R_9108882_9108944 chr2R_9108881_9108882;chr2R_9108944_9108945 chr2R_9108444_9108881;chr2R_9108945_9109309 0.00 NA 0.00 10.17 0.00 3.85 0.00 7.14 3.57 0.00 0.00 4.00 0.00 0.00 0.00 2.38 0.00 0.00 4.76 5.26 0.00 2.50 6.06 1.59 0.00 0.00 10.94 26.09 14.81 0.00 5.88 0.00 2.70 0.00 0.00 15.79 0.00 NA 2.60 5.77 7.69 1.79 5.56 0.00 0.00 10.00 0.00 0.00 2.33 4.17 0.00 0.00 0.00 2.63 0.00 0.00 0.00 6.67 K cassette l(1)G0269,I_chrX_21192541_21192931 chrX - chrX_21192541_21192931 chrX_21192541_21192663;chrX_21192847_21192931 chrX_21192664_21192846 chrX_21192441_21192540;chrX_21192932_21193031 98.82 100.00 100.00 96.26 93.59 98.75 96.59 98.45 97.30 98.82 97.30 98.85 100.00 98.61 98.97 100.00 100.00 100.00 98.75 99.54 94.37 99.04 97.73 99.02 100.00 93.06 98.85 98.28 97.73 96.55 97.67 100.00 99.31 99.24 98.59 98.81 100.00 99.00 98.32 99.44 97.37 98.27 98.53 100.00 99.09 99.21 98.72 99.46 99.42 98.21 99.04 96.67 98.97 98.44 97.85 97.22 100.00 100.00 K jcn_only_AD RpL30,I_chr2L_19008540_19008948,REI_chr2L_19008544_19008723,I_chr2L_19008544_19008918,snoRNA:Me28S-A2113 chr2L - chr2L_19008544_19008723;chr2L_19008544_19008918 chr2L_19008544_19008948 chr2L_19008444_19008543;chr2L_19008949_19009018 98.25 98.78 98.97 98.73 98.65 99.04 98.81 98.88 98.71 97.90 98.55 98.70 99.00 98.86 98.74 98.19 99.20 98.64 99.04 98.34 98.42 91.90 97.67 97.75 97.73 98.77 98.20 97.39 97.71 97.93 93.86 97.63 97.88 98.66 98.27 98.10 98.04 98.14 98.18 97.30 98.34 98.95 98.67 97.92 98.45 98.22 97.87 97.89 97.69 97.41 97.12 97.85 98.44 98.13 98.57 97.75 98.25 98.51 K intron_retention Stat92E,RE_chr3R_16362268_16362911,att-ORFB chr3R - chr3R_16362268_16362915 chr3R_16362267_16362268;chr3R_16362915_16362916 chr3R_16362168_16362267;chr3R_16362916_16363011 0.00 0.00 0.00 0.87 0.00 0.00 1.59 0.71 1.45 0.00 0.00 0.93 0.00 0.00 0.00 0.36 0.00 0.00 0.51 1.92 0.00 0.00 0.65 0.86 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 1.31 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 K intron_retention I_chrX_1757755_1757801,RI_chrX_1770945_1771037,CG14818,RI_chrX_1773382_1773444,trr,I_chrX_1793073_1794406,RI_chrX_1795648_1795745 chrX - chrX_1773384_1773444 chrX_1773383_1773384;chrX_1773444_1773445 chrX_1773011_1773383;chrX_1773445_1773544 0.00 0.00 0.95 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.45 0.00 1.39 1.69 1.03 0.00 4.82 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.69 0.00 0.00 0.00 2.74 0.32 0.00 0.00 0.00 0.80 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.57 0.82 0.00 1.06 K jcn_only_AD CG7530,I_chr3R_10556352_10557136,eff chr3R - chr3R_10556352_10557105;chr3R_10556352_10557130;chr3R_10556352_10557148;chr3R_10556352_10557126 chr3R_10556352_10557198 chr3R_10556252_10556351;chr3R_10557199_10557231 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.49 1.27 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.37 K intron_retention CG31612,E_chr2L_21775447_21821182 chr2L - chr2L_21762900_21765962 chr2L_21762899_21762900;chr2L_21765962_21765963 chr2L_21762314_21762899;chr2L_21765963_21766157 0.00 NA NA 21.43 NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 6.67 NA 0.00 NA NA NA NA NA NA NA K alternative_acceptor sec23,I_chr3R_1474873_1475080,I_chr3R_1474899_1475080,I_chr3R_1474960_1475051,I_chr3R_1477727_1478102 chr3R + chr3R_1474899_1475093 chr3R_1474899_1475080 chr3R_1474877_1474898;chr3R_1475094_1475151 89.06 76.00 95.00 95.45 94.74 88.89 81.08 88.89 89.06 95.00 94.74 83.72 81.82 95.00 96.15 70.27 92.86 85.00 85.19 81.40 88.89 65.62 86.21 83.33 95.24 87.50 96.30 83.87 96.55 55.56 96.43 80.00 60.98 89.74 94.44 94.12 84.00 90.48 78.26 75.00 93.75 87.04 78.95 100.00 92.86 100.00 95.45 91.67 84.44 83.78 92.86 90.00 91.30 85.71 89.66 100.00 88.64 90.48 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2388671_2395659 chrX_2388671_2390808;chrX_2390959_2391350;chrX_2391522_2392054;chrX_2392149_2392515;chrX_2392665_2395659 chrX_2390809_2390958;chrX_2391351_2391521;chrX_2392055_2392148;chrX_2392516_2392664 chrX_2388641_2388670;chrX_2395660_2395759 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Yippee,RI_chrX_13280465_13280617 chrX - chrX_13280465_13280621 chrX_13280465_13280617 chrX_13280365_13280464;chrX_13280622_13280717 0.55 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 1.10 5.88 2.86 2.22 0.00 0.00 3.85 0.00 0.00 0.00 1.45 1.33 3.49 2.44 1.92 1.85 5.13 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 1.25 0.00 1.23 2.94 2.17 0.00 0.00 1.75 2.56 1.30 1.69 1.64 2.50 0.00 1.61 0.00 1.59 1.96 0.00 K intron_retention Tango1,I_chr2L_6652445_6652752,I_chr2L_6652699_6652752 chr2L + chr2L_6652630_6652752 chr2L_6652629_6652630;chr2L_6652752_6652753 chr2L_6652599_6652629;chr2L_6652753_6652852 1.30 1.56 0.00 0.00 0.00 0.00 1.98 3.45 2.03 2.44 0.00 2.21 3.12 1.32 1.32 0.00 0.00 0.00 1.30 1.58 0.00 1.32 4.85 2.56 0.00 0.00 3.85 2.38 1.14 2.94 1.09 0.00 2.67 2.00 0.00 0.00 2.70 0.00 1.47 5.00 1.22 2.92 0.00 2.47 1.33 0.82 2.50 1.05 0.00 1.41 1.39 0.00 0.00 0.00 0.00 2.27 1.06 0.00 K intron_retention CG32016,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_978690_978914 chr4_978689_978690;chr4_978914_978915 chr4_978632_978689;chr4_978915_978920 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 NA 100.00 NA 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA 100.00 NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA NA K intron_retention sno chrX - chrX_13094938_13097742 chrX_13094937_13094938;chrX_13097742_13097743 chrX_13094500_13094937;chrX_13097743_13098183 0.00 0.00 0.00 4.88 0.00 3.57 8.00 4.08 0.00 0.00 0.00 4.44 0.00 0.00 2.94 0.00 0.00 0.00 0.00 14.71 8.33 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 6.90 NA 0.00 0.00 0.00 8.33 0.00 4.17 0.00 12.00 NA 1.92 0.00 7.41 NA NA NA 5.56 3.23 0.00 3.03 4.35 NA NA 5.00 NA NA NA K jcn_only_AD E(bx),I_chr3L_236428_236553,RI_chr3L_236428_236858,RI_chr3L_236451_239054,RI_chr3L_236508_236862,I_chr3L_239004_239054,I_chr3L_239186_239264,I_chr3L_246324_246699 chr3L - chr3L_236428_236553;chr3L_236428_236858;chr3L_236428_236862 chr3L_236428_239054 chr3L_236408_236427 84.21 90.38 88.89 83.56 85.19 89.29 75.51 85.37 87.13 70.83 77.78 78.57 79.17 82.50 92.31 86.79 78.12 78.95 89.80 82.30 81.82 59.26 84.21 87.50 89.66 84.00 93.33 90.32 85.00 84.21 61.54 88.00 86.27 82.56 80.49 70.00 90.57 86.96 97.06 89.47 NA 73.91 75.00 77.78 87.50 71.88 86.21 74.55 74.73 79.31 81.97 93.75 88.89 100.00 85.71 83.33 88.89 73.08 K intron_retention CG13550 chr2R + chr2R_19255948_19256004 chr2R_19255947_19255948;chr2R_19256004_19256005 chr2R_19254380_19255947;chr2R_19256005_19259011 0.00 14.29 0.00 14.29 NA 0.00 2.70 0.00 8.89 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 28.57 0.00 11.54 16.67 0.00 6.67 0.00 0.00 0.00 0.00 0.00 4.35 2.86 NA 0.00 0.00 9.09 2.56 0.00 0.00 0.00 8.33 0.00 0.00 5.13 0.00 0.00 0.00 NA NA 0.00 NA 0.00 3.12 K jcn_only_AA Pink1,F_chrX_6578108_6578160,F_chrX_6578108_6578165,F_chrX_6578108_6578251,I_chrX_6578115_6578251 chrX + chrX_6578104_6578160;chrX_6578104_6578251 chrX_6578104_6578165 chrX_6578015_6578103;chrX_6578252_6578260 4.76 NA NA NA NA NA NA NA 3.85 NA NA 0.00 NA NA NA 23.81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.76 NA 15.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG10990,noncoding_23570 chrX - chrX_13646061_13649285 chrX_13646061_13648862 chrX_13644619_13646060;chrX_13649286_13649418 97.83 98.50 97.47 94.79 99.01 99.28 97.19 97.83 97.95 98.82 97.42 97.33 95.50 97.06 95.48 96.08 96.86 98.33 97.11 96.55 96.88 98.48 96.92 98.28 100.00 95.67 98.67 100.00 95.45 98.17 96.86 98.55 99.18 97.16 96.45 99.26 98.00 98.95 96.81 99.41 98.94 95.03 97.67 99.03 98.27 98.85 98.03 98.19 95.25 99.02 95.16 97.14 97.50 100.00 97.66 98.55 95.65 98.72 K intron_retention spin,I_chr2R_12013288_12013847 chr2R + chr2R_12023631_12023691 chr2R_12023630_12023631;chr2R_12023691_12023692 chr2R_12023532_12023630;chr2R_12023692_12023865 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 1.67 1.41 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention coro,I_chr2R_2754447_2755071 chr2R - chr2R_2751039_2751782 chr2R_2751038_2751039;chr2R_2751782_2751783 chr2R_2750853_2751038;chr2R_2751783_2752076 1.43 2.21 0.76 2.29 1.00 0.83 2.34 1.33 1.83 0.00 4.55 0.97 0.00 1.03 2.17 0.84 2.78 0.00 0.93 2.67 1.00 27.27 1.65 2.81 3.25 1.09 3.09 0.00 0.00 0.95 0.73 1.19 1.43 2.26 0.79 1.63 1.94 2.23 1.35 1.06 2.20 1.82 1.27 3.23 1.43 2.45 1.32 1.52 2.25 3.05 2.33 1.01 0.00 1.36 2.01 2.72 0.81 0.00 K intron_retention CG33691_CG33692,CG33691,noncoding_22320 chrX + chrX_6766955_6768354 chrX_6766954_6766955;chrX_6768354_6768355 chrX_6766749_6766954;chrX_6768355_6768589 44.00 38.46 50.00 91.67 NA 45.45 92.86 51.85 44.12 NA 20.00 57.89 91.67 63.64 38.10 60.87 NA 40.00 38.46 53.57 21.43 NA 18.18 40.00 NA NA 31.25 NA NA NA 45.45 53.85 59.09 65.00 NA NA 45.45 11.76 43.75 47.83 NA 44.00 NA 16.67 NA 36.84 20.00 64.29 53.85 30.77 33.33 NA NA 20.00 33.33 33.33 38.46 47.06 N alternative_donor Spase12 chr3R - chr3R_25316476_25316531 chr3R_25316476_25316527 chr3R_25316407_25316475;chr3R_25316532_25316612 1.57 2.19 1.29 1.36 2.32 0.47 0.89 0.48 1.18 2.65 1.08 0.88 0.68 1.16 0.69 0.98 1.00 0.79 0.67 1.11 0.76 1.89 3.76 2.32 4.71 1.80 4.18 4.91 12.03 1.58 0.55 1.96 1.54 0.98 2.33 2.66 2.42 3.66 1.89 1.37 6.17 1.21 1.16 1.64 1.80 3.14 1.45 3.42 0.71 2.68 3.10 1.05 2.35 1.38 0.37 2.07 2.02 1.57 K intron_retention Rab5,I_chr2L_2361586_2364444,RI_chr2L_2361586_2364627,I_chr2L_2361586_2364794 chr2L - chr2L_2361586_2362674 chr2L_2361585_2361586;chr2L_2362674_2362675 chr2L_2361486_2361585;chr2L_2362675_2362690 12.50 NA NA 23.53 NA NA NA 18.75 15.38 NA NA 0.00 NA NA NA 0.00 NA NA 14.29 12.50 NA NA 5.56 NA NA NA NA NA NA NA NA NA NA 15.79 7.14 NA 7.14 NA NA NA NA 9.09 NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA K alternative_acceptor Imp,I_chrX_10699490_10700695,RI_chrX_10699665_10700501,RI_chrX_10699665_10700695 chrX - chrX_10699547_10700501;chrX_10699503_10700501 chrX_10699665_10700501 chrX_10700502_10700547;chrX_10699299_10699502 54.77 40.00 58.33 46.67 NA 40.00 78.26 53.57 73.08 NA 40.00 46.15 60.00 64.29 50.00 60.61 42.86 58.33 41.18 45.00 71.43 43.75 38.46 NA NA 60.00 83.33 57.14 NA 37.50 66.67 NA 75.00 51.72 66.67 71.43 NA NA NA 33.33 NA 40.00 61.54 75.00 NA 60.00 NA 55.00 50.00 NA NA NA NA NA 54.55 NA NA 41.67 K intron_retention CAH2 chr3L + chr3L_12173256_12174775 chr3L_12173255_12173256;chr3L_12174775_12174776 chr3L_12172921_12173255;chr3L_12174776_12175248 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention cora,I_chr2R_15125277_15130573,I_chr2R_15125940_15130208,I_chr2R_15129291_15129988 chr2R + chr2R_15129291_15129678 chr2R_15129290_15129291;chr2R_15129678_15129679 chr2R_15129191_15129290;chr2R_15129679_15129900 0.45 0.48 0.73 0.46 0.65 0.21 0.86 0.50 0.74 0.39 0.37 1.13 0.79 0.53 0.66 1.36 0.72 0.36 0.25 0.35 0.39 0.38 0.69 0.42 0.29 1.01 0.70 0.94 0.18 0.00 0.46 0.22 0.21 0.55 0.40 0.44 0.54 0.23 0.36 0.57 0.25 0.56 0.53 0.25 0.24 0.24 0.00 0.36 0.62 0.52 0.22 0.47 0.41 0.13 0.96 0.51 0.45 0.29 K jcn_only_AD Nedd4,I_chr3L_17526753_17527450,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17526753_17527450;chr3L_17526950_17527450 chr3L_17526749_17527450 chr3L_17527451_17527550;chr3L_17526708_17526748 67.80 NA 66.67 70.37 NA 57.14 62.96 73.53 56.86 NA NA 61.54 65.22 NA 95.24 67.74 NA 66.67 77.78 76.92 50.00 NA 68.29 NA 66.67 67.86 61.90 NA 60.00 NA 68.00 NA NA 56.76 NA NA NA NA 66.67 NA NA 72.41 90.00 55.00 NA 79.17 NA 76.47 80.70 NA 74.07 64.00 NA NA 82.14 NA NA 78.26 K alternative_last_exon I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,cg,I_chr2R_10064197_10068715,I_chr2R_10067437_10068984,I_chr2R_10068194_10068715 chr2R + chr2R_10067437_10068715 chr2R_10067437_10067926 chr2R_10068716_10070345 chr2R_10067927_10068324 chr2R_10067337_10067436 2.17 3.77 2.04 4.83 3.12 2.56 3.12 3.07 2.13 1.23 1.89 4.64 1.43 4.71 2.13 2.86 1.27 3.96 0.99 2.70 4.41 2.29 2.25 2.16 2.50 1.32 4.10 8.11 0.99 1.85 3.45 1.27 3.00 2.34 0.95 5.05 2.41 0.96 1.32 2.07 1.96 2.17 1.28 1.72 0.51 1.90 2.13 1.39 2.51 0.79 4.05 3.33 2.50 1.61 2.75 1.43 1.50 3.22 K intron_retention pigeon chr2L + chr2L_19188532_19188590 chr2L_19188531_19188532;chr2L_19188590_19188591 chr2L_19188299_19188531;chr2L_19188591_19188805 0.00 NA NA 40.00 NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA 0.00 9.09 NA NA 12.50 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA K jcn_only_AD CG11984,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4839215_4839655;chr3R_4839215_4839851;chr3R_4839215_4839728;chr3R_4839215_4839889;chr3R_4839215_4839799 chr3R_4839215_4839561 chr3R_4839038_4839214;chr3R_4839890_4839901 60.00 61.90 63.64 56.67 NA NA NA 63.33 51.16 NA NA 59.09 NA NA NA NA NA NA 64.00 30.00 NA 86.67 66.67 NA NA 40.91 76.00 NA NA NA NA NA NA 50.00 NA NA NA NA NA 60.00 NA 48.57 NA 65.00 NA 54.55 NA NA 51.28 39.13 NA NA NA NA NA NA 63.33 77.27 K intron_retention CLIP-190,I_chr2L_17394493_17404060,I_chr2L_17401291_17404060,I_chr2L_17401582_17402303 chr2L + chr2L_17384840_17385225 chr2L_17384839_17384840;chr2L_17385225_17385226 chr2L_17384808_17384839;chr2L_17385226_17385440 90.91 88.89 88.89 94.74 NA NA 91.67 93.33 95.83 NA NA 94.44 88.89 83.33 76.92 88.00 90.91 NA 85.71 80.00 88.89 NA 88.89 NA NA 100.00 NA NA NA NA 90.91 NA NA 91.30 100.00 NA NA NA NA 100.00 NA 93.33 90.91 NA NA NA NA 72.73 90.48 NA 90.91 NA NA NA 75.00 NA NA NA K jcn_only_AA CG8726 chr2R - chr2R_3859035_3859141 chr2R_3859070_3859141 chr2R_3859142_3859511;chr2R_3858749_3859034 6.82 7.14 2.13 6.45 5.13 8.89 5.13 1.96 5.88 8.82 3.03 4.35 2.63 0.00 10.42 7.14 5.26 0.00 16.67 2.63 4.88 16.67 9.01 4.05 7.50 2.86 7.14 0.00 14.04 10.14 5.00 4.00 3.03 9.84 6.82 0.00 8.00 6.56 9.59 7.92 11.54 3.16 9.09 11.76 16.33 4.88 11.63 18.00 8.43 6.25 9.52 4.76 10.00 14.71 5.66 4.76 7.14 8.33 K jcn_only_AA Dscam,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3251271_3255892;chr2R_3254472_3255892;chr2R_3253610_3255892;chr2R_3252685_3255892;chr2R_3251854_3255892;chr2R_3252399_3255892;chr2R_3250996_3255892;chr2R_3254133_3255892;chr2R_3252123_3255892;chr2R_3252988_3255892 chr2R_3250700_3255892 chr2R_3255893_3255920 11.63 15.15 10.26 4.76 21.88 14.29 7.41 9.76 14.29 NA NA 12.99 NA 20.83 9.30 20.00 9.52 NA 9.09 8.89 15.62 8.00 15.38 12.82 18.42 6.67 6.12 12.50 11.63 11.63 11.11 NA 12.73 2.17 23.08 3.85 6.06 12.90 6.15 11.94 NA 9.80 25.00 15.38 NA 13.04 7.41 8.82 16.67 10.00 13.64 8.70 NA NA 4.00 17.39 17.39 NA K intron_retention CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20346714_20347206 chr3L_20346713_20346714;chr3L_20347206_20347207 chr3L_20346638_20346713;chr3L_20347207_20347505 100.00 NA 100.00 NA NA NA NA 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA 88.89 NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA 90.91 NA NA NA K intron_retention CG5941,E_chrX_5932158_5932432 chrX + chrX_5932227_5932295 chrX_5932226_5932227;chrX_5932295_5932296 chrX_5932074_5932226;chrX_5932296_5932598 1.94 0.00 0.00 3.54 0.00 0.00 4.80 2.13 1.89 1.94 3.08 1.24 0.00 2.27 2.02 3.54 0.00 0.00 0.97 2.03 0.00 13.70 3.05 1.54 5.43 2.35 11.11 8.82 17.39 0.96 9.09 2.78 0.00 0.00 2.86 1.27 1.23 0.00 1.86 3.97 7.14 2.02 0.00 1.27 3.54 2.50 0.00 5.56 3.37 0.80 0.00 0.00 1.94 4.88 0.79 0.00 0.99 2.65 K intron_retention RpL13A,I_chr3R_1450243_1451235,EI_chr3R_1450853_1451054,snoRNA:Me28S-U2134b,snoRNA:Me28S-U2134a chr3R + chr3R_1450853_1451054 chr3R_1450852_1450853;chr3R_1451054_1451055 chr3R_1450753_1450852;chr3R_1451055_1451154 8.57 NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 21.43 10.53 NA NA NA NA NA NA 0.00 NA NA NA NA 10.00 NA NA NA NA 0.00 NA NA 6.67 NA 13.33 NA NA 7.14 NA NA 25.00 0.00 K alternative_acceptor CG9740,RI_chr3R_5083859_5083977,I_chr3R_5083907_5083977 chr3R - chr3R_5083859_5083977;chr3R_5083911_5083977 chr3R_5083907_5083977 chr3R_5083978_5084077;chr3R_5083807_5083858 0.00 0.00 0.00 0.00 10.00 8.33 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 2.70 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 7.14 13.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette PP2A-B' chr3R + chr3R_13993929_13995378;chr3R_13993590_13995378 chr3R_13993929_13995205,chr3R_13993590_13995205;chr3R_13995271_13995378 chr3R_13995206_13995270 chr3R_13993510_13993589;chr3R_13995379_13995820 68.75 50.00 NA 90.91 NA 62.50 65.00 68.75 70.83 NA NA 78.95 85.71 73.33 60.00 82.61 50.00 NA 77.78 84.21 NA 50.00 NA 53.85 50.00 75.00 NA NA NA NA 80.00 NA 71.43 84.62 NA NA NA NA NA 66.67 NA 68.75 81.82 37.50 NA NA NA 63.64 65.00 28.57 87.50 50.00 NA NA 64.29 NA NA NA K jcn_only_AD Ubi-p5E,E_chrX_6171360_6172728,E_chrX_6171636_6173159,E_chrX_6172320_6173159,I_chrX_6172787_6172907 chrX - chrX_6172787_6173168 chrX_6172787_6172907 chrX_6172734_6172786;chrX_6173169_6173259 0.00 0.00 0.00 0.13 0.00 0.00 0.17 0.00 0.35 0.00 0.00 0.15 0.00 0.26 0.26 0.11 0.00 0.33 0.25 0.00 0.00 0.00 0.15 0.00 0.00 0.27 0.00 0.31 0.47 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.17 0.00 0.00 0.15 0.00 0.13 0.00 0.15 0.42 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045277_16046104 chr3L_16045276_16045277;chr3L_16046104_16046105 chr3L_16045216_16045276;chr3L_16046105_16046204 90.45 88.89 NA 92.31 NA NA 88.89 87.50 90.00 NA NA 92.31 91.67 100.00 90.00 88.89 80.00 88.89 92.86 87.50 NA 100.00 92.86 87.50 NA 92.86 90.91 100.00 88.89 80.00 84.62 NA 94.12 95.24 NA 100.00 NA NA NA 100.00 NA 86.36 100.00 91.67 NA NA NA 86.67 95.24 NA 90.00 NA NA NA 81.25 NA NA NA K alternative_acceptor sgg,I_chrX_2528059_2528637,I_chrX_2528131_2535622,RI_chrX_2528212_2535830,I_chrX_2528367_2535622,I_chrX_2528472_2535622,I_chrX_2529065_2563945,I_chrX_2536127_2563666,I_chrX_2563342_2563666,I_chrX_2565856_2566099,I_chrX_2566157_2566946 chrX + chrX_2528212_2535830 chrX_2528212_2535622 chrX_2528171_2528211;chrX_2535831_2535930 100.00 100.00 94.29 98.04 100.00 100.00 97.96 98.48 100.00 93.75 100.00 97.78 100.00 100.00 94.44 97.96 100.00 96.43 97.56 97.73 100.00 100.00 100.00 100.00 100.00 93.55 93.33 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 92.31 100.00 100.00 96.00 92.31 100.00 100.00 93.75 98.41 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor fon,I_chr2L_19385355_19385669,E_chr2L_19385377_19386086,CE_chr2L_19385715_19386086,I_chr2L_19388570_19389922 chr2L - chr2L_19385355_19385669 chr2L_19385364_19385669 chr2L_19385670_19385704;chr2L_19385277_19385354 100.00 90.91 100.00 100.00 NA 90.91 100.00 100.00 100.00 100.00 NA 95.65 NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA 95.65 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 94.12 95.83 88.89 100.00 100.00 100.00 100.00 95.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 K jcn_only_AA Fps85D,I_chr3R_5194729_5194776,I_chr3R_5216796_5218450 chr3R - chr3R_5195433_5198477;chr3R_5198303_5198477 chr3R_5198300_5198477 chr3R_5198478_5198655 0.88 0.85 0.00 0.58 0.00 0.00 1.47 1.20 0.89 0.00 0.00 0.00 1.20 0.00 0.82 0.00 0.00 0.88 0.00 1.40 0.00 3.08 2.76 0.00 4.11 0.93 0.00 4.88 2.06 0.90 1.52 2.15 1.79 0.00 2.27 1.98 0.78 0.00 0.00 1.34 0.00 0.48 0.00 0.00 3.33 0.00 1.30 1.38 0.44 1.11 0.76 1.54 1.54 1.41 0.00 1.03 2.11 1.03 K alternative_donor CG31731,I_chr2L_13786850_13786922 chr2L + chr2L_13786850_13786922 chr2L_13786860_13786922 chr2L_13786923_13787022;chr2L_13786750_13786849 96.15 89.29 96.97 98.21 95.83 96.67 93.62 92.06 94.59 93.75 96.77 96.55 96.00 97.06 95.45 93.55 96.97 93.33 100.00 94.87 96.43 91.30 92.50 100.00 96.15 97.37 96.97 92.31 100.00 96.67 82.69 87.50 92.11 91.80 95.00 97.14 97.44 93.75 93.62 95.77 95.00 97.01 96.30 97.30 100.00 97.30 94.12 98.00 94.12 96.15 97.96 100.00 92.31 100.00 97.50 89.47 100.00 90.32 N intron_retention RpL11,I_chr2R_15330246_15330292,I_chr2R_15330603_15330817,snoRNA:Psi28S-2444 chr2R + chr2R_15330604_15330836 chr2R_15330603_15330604;chr2R_15330836_15330837 chr2R_15330318_15330603;chr2R_15330837_15330917 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention I_chr2L_12099367_12099435,Aats-thr chr2L + chr2L_12105122_12105175 chr2L_12105121_12105122;chr2L_12105175_12105176 chr2L_12104688_12105121;chr2L_12105176_12106918 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Plip chr3R + chr3R_19584251_19584496 chr3R_19584250_19584251;chr3R_19584496_19584497 chr3R_19584040_19584250;chr3R_19584497_19584640 0.00 5.41 0.00 4.44 0.00 7.41 0.00 4.44 3.85 0.00 0.00 0.00 0.00 8.00 2.63 2.86 0.00 0.00 8.33 3.61 3.45 0.00 3.57 3.33 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 2.53 0.00 3.17 0.00 5.26 3.33 3.39 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 3.45 4.26 2.17 0.00 K intron_retention l(2)k01209,RI_chr2R_13310877_13311160 chr2R + chr2R_13312265_13312323 chr2R_13312264_13312265;chr2R_13312323_13312324 chr2R_13312078_13312264;chr2R_13312324_13312917 4.31 4.21 7.32 6.52 6.35 0.00 7.14 3.37 3.59 5.36 3.03 2.86 0.00 2.70 6.58 5.75 3.57 7.81 3.70 6.37 5.36 20.00 5.56 3.33 7.69 2.78 5.23 5.68 7.94 4.90 6.48 4.23 6.60 3.60 5.15 8.65 4.46 5.56 4.64 3.90 2.38 4.73 3.12 2.67 3.23 1.77 3.03 1.28 1.54 5.32 4.24 4.35 0.00 4.31 1.09 5.30 1.68 0.00 K jcn_only_AD CG42568,RI_chr2R_20046540_20046671,RI_chr2R_20046609_20046675,RI_chr2R_20046743_20046821 chr2R - chr2R_20046609_20046675;chr2R_20046609_20046671 chr2R_20046609_20046667 chr2R_20046509_20046608;chr2R_20046676_20046742 32.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 32.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention LanA,I_chr3L_6208090_6208194 chr3L - chr3L_6208112_6208194 chr3L_6208111_6208112;chr3L_6208194_6208195 chr3L_6207902_6208111;chr3L_6208195_6208294 0.00 0.31 0.35 0.35 0.23 0.00 0.08 0.00 0.22 0.00 0.24 0.21 0.25 0.21 0.00 0.36 0.11 0.36 0.00 0.17 0.48 0.00 0.00 0.00 0.39 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.06 0.00 0.45 0.26 0.00 0.00 0.00 0.00 0.22 0.14 0.00 0.00 0.00 0.00 0.45 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD RpL11,I_chr2R_15330246_15330292,I_chr2R_15330603_15330817 chr2R + chr2R_15329995_15330122 chr2R_15330062_15330122 chr2R_15330123_15330245;chr2R_15329948_15329994 0.32 0.00 1.05 0.29 0.00 0.35 0.57 0.36 0.08 0.43 0.33 0.31 0.98 1.40 0.88 0.25 0.95 2.19 1.46 0.20 1.31 0.18 0.41 0.26 0.33 2.91 0.19 0.06 0.59 0.18 18.08 0.27 0.29 0.29 0.42 0.09 0.07 0.14 0.18 0.32 0.89 0.27 3.16 0.22 0.27 0.58 0.28 0.63 0.39 0.32 0.44 0.14 0.20 0.39 0.93 0.17 0.14 0.64 K alternative_donor CG12753,CG14894,RI_chr3R_12268071_12268135,RI_chr3R_12268071_12268141,RI_chr3R_12268071_12268661,Pak3 chr3R - chr3R_12268071_12268661;chr3R_12268071_12268124;chr3R_12268071_12268141;chr3R_12268071_12268135 chr3R_12268071_12268145 chr3R_12267971_12268070;chr3R_12268662_12268688 3.17 5.00 3.51 2.63 2.17 3.92 1.64 1.41 2.73 3.45 10.87 3.33 2.78 2.22 10.29 3.08 5.00 3.51 3.92 4.10 6.38 1.52 2.67 3.75 2.33 1.75 10.34 9.68 3.17 3.77 4.17 1.20 5.88 2.67 3.85 15.52 3.85 3.45 1.41 1.96 2.60 2.65 4.55 5.66 1.87 2.70 2.17 2.17 3.16 2.08 5.56 2.38 1.35 5.88 3.12 3.80 4.29 1.90 K cassette CG11870,I_chr3R_6124314_6124732 chr3R + chr3R_6120041_6122455 chr3R_6120041_6121042;chr3R_6121784_6122455 chr3R_6121043_6121783 chr3R_6118916_6120040;chr3R_6122456_6122831 5.00 4.35 7.41 3.85 6.25 0.00 4.17 4.00 8.11 4.76 6.67 7.41 NA 5.00 5.00 10.00 0.00 7.69 5.00 5.71 NA 11.76 5.71 4.88 4.00 5.00 4.76 9.52 13.04 3.85 7.14 4.17 5.26 4.55 4.17 4.35 5.71 6.90 4.55 4.76 3.45 4.65 0.00 7.14 6.25 3.57 4.76 7.69 2.50 4.35 2.63 5.56 5.88 5.56 0.00 5.88 6.67 4.35 K intron_retention CG3437,CG3434 chr3L - chr3L_9450636_9450693 chr3L_9450635_9450636;chr3L_9450693_9450694 chr3L_9450462_9450635;chr3L_9450694_9450733 12.50 NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention stj chr2R + chr2R_9697175_9697418 chr2R_9697174_9697175;chr2R_9697418_9697419 chr2R_9696883_9697174;chr2R_9697419_9697868 0.00 0.00 0.00 6.25 0.00 5.56 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 5.56 2.38 0.00 2.17 2.68 0.00 0.00 0.00 0.00 0.00 1.25 5.06 6.67 0.00 0.00 0.00 11.11 5.00 2.50 0.00 0.00 0.00 0.00 1.39 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.83 3.57 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 K intron_retention REI_chr3L_1545423_1545473,I_chr3L_1545606_1545652,CG12099,CG7879 chr3L - chr3L_1556004_1556062 chr3L_1556003_1556004;chr3L_1556062_1556063 chr3L_1555341_1556003;chr3L_1556063_1556217 2.94 1.56 4.17 13.27 0.00 0.00 0.97 2.88 2.56 0.00 3.77 2.21 7.14 0.00 3.26 2.44 3.77 1.37 0.00 2.60 0.00 15.07 2.44 4.60 8.89 7.02 4.29 13.64 10.61 4.62 2.73 2.94 2.80 2.63 9.09 8.62 2.22 0.00 0.00 3.31 6.06 3.87 4.84 0.98 0.00 1.09 1.59 2.50 4.72 3.85 4.21 3.57 3.70 1.59 3.33 5.49 0.00 5.13 K intron_retention mbc,I_chr3R_19615584_19615649,I_chr3R_19625220_19625288 chr3R + chr3R_19625911_19625972 chr3R_19625910_19625911;chr3R_19625972_19625973 chr3R_19625740_19625910;chr3R_19625973_19626117 0.00 1.37 0.00 3.74 0.00 0.00 0.00 0.00 1.97 0.00 0.00 1.46 1.72 0.00 2.94 1.27 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 4.35 2.13 2.13 0.00 3.03 0.00 0.00 1.15 2.44 0.00 0.00 0.00 0.00 4.00 0.00 1.72 0.00 0.00 1.75 1.89 0.00 4.55 3.70 0.00 1.56 1.72 0.00 0.00 0.00 0.88 0.00 3.28 K alternative_acceptor CG11880,I_chr3R_24949827_24951052,CE_chr3R_24962426_24962797 chr3R + chr3R_24949827_24951129;chr3R_24949827_24951126 chr3R_24949827_24951052 chr3R_24949727_24949826;chr3R_24951130_24951152 1.16 2.56 0.00 1.28 0.00 0.00 6.25 1.45 1.20 0.00 0.00 1.49 0.00 2.08 0.00 0.00 2.56 0.00 0.00 0.00 2.86 1.75 1.96 0.00 3.03 3.17 1.85 1.54 3.03 0.00 1.20 0.00 1.65 1.61 3.12 5.66 1.37 2.17 2.22 0.98 0.00 0.00 0.00 1.37 0.00 0.00 0.00 1.16 2.41 0.00 2.17 0.00 0.00 5.00 0.00 0.00 0.00 0.00 K alternative_donor Trf4-1,I_chrX_8455293_8457185,RI_chrX_8455791_8457185,R_chrX_8455801_8457185,I_chrX_8455902_8457185,I_chrX_8459198_8459266 chrX + chrX_8454992_8457185;chrX_8454847_8457185 chrX_8455100_8457185 chrX_8457186_8457285;chrX_8454674_8454846 13.04 9.52 15.38 6.82 11.76 12.00 9.09 10.42 14.29 25.00 45.45 10.87 11.11 8.33 12.50 10.26 15.00 9.52 13.04 18.52 11.76 30.00 13.04 9.38 5.56 22.22 9.38 36.36 33.33 18.18 11.11 30.77 46.15 7.14 7.14 18.75 21.43 14.29 12.50 15.79 23.08 15.38 8.33 25.00 44.44 23.08 0.00 60.00 11.54 16.67 8.33 5.26 18.18 9.09 11.54 21.43 25.00 55.56 K alternative_donor CG5270,I_chr3R_7253146_7253201,F_chr3R_7256294_7256363 chr3R + chr3R_7253142_7253201 chr3R_7253146_7253201 chr3R_7253202_7253301;chr3R_7253046_7253141 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 2.13 NA 0.00 2.70 5.56 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 2.94 0.00 4.55 0.00 NA 4.17 NA 0.00 NA NA NA 0.00 2.22 NA 3.45 NA NA NA 0.00 0.00 0.00 NA K intron_retention CG7611,I_chr3L_21516702_21517821 chr3L + chr3L_21516728_21517821 chr3L_21516727_21516728;chr3L_21517821_21517822 chr3L_21516383_21516727;chr3L_21517822_21517920 25.17 NA NA NA NA NA 27.27 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 23.08 NA NA NA NA NA 10.53 NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.77 28.57 NA NA NA NA NA NA NA NA NA K intron_retention CG30349,lin chr2R + chr2R_4796526_4796581 chr2R_4796525_4796526;chr2R_4796581_4796582 chr2R_4796040_4796525;chr2R_4796582_4796710 0.00 0.00 0.78 1.64 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.55 0.00 0.00 1.94 1.01 0.00 1.34 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.50 0.00 0.00 1.57 1.21 0.00 0.00 0.00 0.43 0.52 0.00 0.00 0.00 0.00 1.61 0.00 0.39 K jcn_only_AD CG15134 chr2L + chr2L_16904132_16904236 chr2L_16904144_16904236 chr2L_16904237_16904401;chr2L_16902932_16904131 23.81 28.57 20.59 26.87 27.03 19.35 22.39 33.33 29.20 30.43 31.43 23.81 28.57 24.24 15.79 31.58 19.05 11.76 17.95 27.50 12.00 25.71 20.69 23.08 22.86 23.08 22.22 13.04 26.09 27.03 16.67 NA 27.59 24.29 27.59 29.41 46.00 NA 23.33 15.69 NA 27.63 13.51 26.19 NA NA 20.00 21.21 27.16 NA 15.38 NA NA NA 21.82 NA NA NA K jcn_only_AA Ptp69D,CG32112 chr3L + chr3L_12731804_12731874 chr3L_12731804_12731871 chr3L_12731560_12731803;chr3L_12731875_12732766 50.00 57.89 57.14 46.00 41.94 NA 56.72 52.00 48.78 NA 40.00 50.00 38.24 53.33 42.55 48.08 60.00 14.81 45.83 39.62 44.00 63.41 54.55 71.43 55.00 45.00 60.00 NA 48.00 53.85 48.57 NA NA 48.57 47.83 63.64 70.00 50.00 47.83 50.00 NA 52.11 44.44 56.76 NA 50.00 NA 54.84 51.47 30.00 52.94 55.56 NA NA 50.00 NA NA 52.17 K intron_retention CG12946,noncoding_15730,I_chr3R_5599701_5600032,I_chr3R_5609682_5609889 chr3R - chr3R_5599701_5600041 chr3R_5599700_5599701;chr3R_5600041_5600042 chr3R_5599601_5599700;chr3R_5600042_5600132 78.17 66.67 NA 81.82 58.33 76.92 100.00 78.57 72.00 NA NA 95.00 77.78 NA 75.00 76.92 77.78 80.00 NA 84.21 90.00 NA 69.23 72.73 88.89 90.00 80.00 NA 72.73 85.71 92.31 NA 100.00 71.43 NA 90.91 76.92 72.73 76.47 77.27 NA 76.19 NA 90.00 NA NA NA 83.33 88.89 NA 75.00 NA NA NA 88.89 72.73 NA 100.00 K jcn_only_AD CG2004,I_chrX_8608130_8608508,RI_chrX_8608147_8608508,I_chrX_8608169_8608438 chrX - chrX_8608169_8608508 chrX_8608169_8608438 chrX_8608069_8608168;chrX_8608509_8608538 4.30 0.00 4.23 4.21 2.00 7.55 6.06 3.33 3.10 10.42 8.00 1.61 0.00 4.84 8.96 2.68 2.33 3.28 9.21 0.89 3.23 6.45 2.53 4.65 1.75 5.06 6.06 6.17 12.96 7.84 3.85 5.26 1.67 5.05 1.33 1.82 4.29 4.17 0.00 4.59 0.00 3.28 5.36 3.12 4.41 4.30 6.94 12.07 3.31 4.42 6.38 4.55 4.00 5.45 6.52 4.48 4.49 1.54 K cassette Arf79F,I_chr3L_22863166_22863946,I_chr3L_22863166_22864419,RI_chr3L_22863251_22863389,RI_chr3L_22863251_22863952,I_chr3L_22863251_22864009,I_chr3L_22863251_22864188,I_chr3L_22863251_22864501,I_chr3L_22863251_22864629,RI_chr3L_22863251_22864763,I_chr3L_22863251_22864866,RI_chr3L_22871119_22871250,I_chr3L_22871351_22871733 chr3L - chr3L_22863251_22865023 chr3L_22863251_22863314;chr3L_22863395_22865023 chr3L_22863315_22863394 chr3L_22863151_22863250;chr3L_22865024_22865147 0.00 0.00 0.00 0.00 0.00 1.22 0.65 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 K intron_retention CG14657 chr3R - chr3R_645633_645832 chr3R_645632_645633;chr3R_645832_645833 chr3R_645516_645632;chr3R_645833_645870 47.22 NA NA NA NA NA 50.00 41.67 47.37 NA NA 41.67 50.00 54.55 NA NA NA NA NA 47.06 NA 23.53 NA NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA 53.33 NA 33.33 NA NA NA NA NA NA NA K jcn_only_AD CG7611,I_chr3L_21516702_21517821 chr3L + chr3L_21516706_21517821;chr3L_21516330_21517821;chr3L_21516399_21517821;chr3L_21517168_21517821;chr3L_21516722_21517821;chr3L_21516918_21517821;chr3L_21516343_21517821;chr3L_21516728_21517821 chr3L_21516501_21517821 chr3L_21517822_21517920;chr3L_21516311_21516329 1.69 13.64 4.00 0.00 0.00 0.00 3.39 0.00 6.00 NA NA 2.38 NA 0.00 4.00 0.00 5.00 20.00 NA 0.00 NA 0.00 0.00 9.09 NA 0.00 4.76 NA 2.27 NA 2.56 NA 0.00 4.08 NA 0.00 7.14 0.00 NA 0.00 NA 1.69 0.00 3.03 NA 0.00 4.76 4.76 3.28 NA NA NA NA NA 0.00 NA NA 0.00 K alternative_acceptor cl chr2L + chr2L_5520236_5520301;chr2L_5520236_5520286 chr2L_5520236_5520304 chr2L_5520216_5520235;chr2L_5520305_5520545 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 NA 0.00 1.69 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA NA 0.96 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 7.69 0.00 NA 0.00 0.00 NA 0.00 0.00 K intron_retention Amun,I_chrX_11607839_11608272,I_chrX_11607842_11608105,I_chrX_11607842_11608125,RI_chrX_11607842_11608272 chrX - chrX_11607842_11608507 chrX_11607841_11607842;chrX_11608507_11608508 chrX_11607788_11607841;chrX_11608508_11608588 4.26 0.00 NA 4.55 NA NA 6.25 10.00 2.78 NA NA 7.41 NA NA 0.00 0.00 NA NA NA 8.33 NA 10.53 6.25 NA NA NA 0.00 NA 0.00 NA NA NA 0.00 4.35 NA 13.33 4.17 NA 0.00 6.67 NA 12.00 NA NA 0.00 9.52 0.00 2.70 6.25 NA NA NA NA 6.67 0.00 10.53 0.00 0.00 K jcn_only_AA Hr39,I_chr2L_21256047_21256260 chr2L + chr2L_21256047_21256945 chr2L_21256047_21256260 chr2L_21255947_21256046;chr2L_21256946_21257048 0.00 0.00 3.12 7.25 4.17 0.00 0.00 0.00 0.00 4.55 14.81 1.79 0.00 NA 0.00 0.00 0.00 0.00 0.00 1.00 3.57 5.26 0.00 0.00 NA 9.68 3.85 0.00 0.00 2.86 2.44 NA 0.00 2.78 0.00 0.00 0.00 0.00 2.78 0.00 NA 2.94 0.00 2.86 NA 0.00 3.57 5.00 1.47 0.00 0.00 0.00 0.00 NA 3.45 0.00 NA 2.94 K alternative_donor CaMKII,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,I_chr4_1071489_1071884,RI_chr4_1071489_1071968,I_chr4_1071569_1071884,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1071675_1071884 chr4_1071675_1071813 chr4_1071575_1071674;chr4_1071885_1071899 100.00 100.00 100.00 100.00 NA NA 92.31 93.75 92.31 NA NA 100.00 87.50 88.89 100.00 93.75 100.00 100.00 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 85.71 NA 100.00 88.89 NA NA NA NA 100.00 94.12 NA NA NA NA NA 100.00 NA NA NA K intron_retention CG9684 chr3R - chr3R_4188104_4188160 chr3R_4188103_4188104;chr3R_4188160_4188161 chr3R_4187630_4188103;chr3R_4188161_4188266 0.00 0.00 6.25 12.82 0.00 2.94 0.00 0.00 2.22 0.00 0.00 4.65 NA 0.00 0.00 0.00 0.00 0.00 0.00 4.35 NA 5.26 0.00 0.00 0.00 11.76 16.67 4.35 30.43 0.00 0.00 0.00 4.00 6.25 16.67 10.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 4.44 0.00 5.13 0.00 0.00 0.00 5.71 5.56 0.00 3.70 K alternative_acceptor TMS1 chr3L + chr3L_16407594_16407920;chr3L_16407594_16407905;chr3L_16407594_16407893;chr3L_16407594_16407902 chr3L_16407594_16407914 chr3L_16407384_16407593;chr3L_16407921_16408056 27.72 30.18 24.41 38.35 27.72 25.23 41.18 22.29 25.45 34.55 26.42 31.79 27.72 25.30 28.93 19.42 20.45 29.59 24.74 29.24 26.47 25.07 30.90 28.22 28.04 15.46 31.48 16.35 29.29 25.34 30.51 30.13 26.58 25.43 27.62 26.96 31.76 25.97 31.63 27.84 26.18 27.54 22.09 28.99 24.89 27.70 26.32 28.12 29.56 32.28 29.29 20.73 35.05 30.77 27.45 27.50 27.74 34.75 K intron_retention CG15822,F_chr3L_2157814_2158246,CG15879 chr3L - chr3L_2168785_2168954 chr3L_2168784_2168785;chr3L_2168954_2168955 chr3L_2167550_2168784;chr3L_2168955_2169188 6.67 NA 0.00 30.00 NA NA 6.67 6.06 13.89 NA NA 11.54 NA 23.08 10.00 18.18 6.67 NA 0.00 9.68 NA 13.33 0.00 6.67 NA 0.00 11.76 NA NA NA 0.00 NA 0.00 13.79 NA NA NA NA 0.00 20.00 NA 11.90 6.67 NA NA 5.26 4.00 NA 15.15 NA 6.67 21.43 NA NA 4.76 NA NA NA K intron_retention CG30492,C_chr2R_3522706_3523025,RI_chr2R_3536203_3536977,I_chr2R_3543397_3543455 chr2R + chr2R_3538314_3538366 chr2R_3538313_3538314;chr2R_3538366_3538367 chr2R_3538199_3538313;chr2R_3538367_3538507 6.28 NA NA 29.41 NA NA NA NA 15.00 0.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 5.88 14.29 NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA 0.00 0.00 NA 11.11 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 6.67 K intron_retention YT521-B chr3L - chr3L_3373870_3374132 chr3L_3373869_3373870;chr3L_3374132_3374133 chr3L_3372970_3373869;chr3L_3374133_3374188 92.92 87.50 95.65 96.67 90.91 100.00 100.00 97.37 92.98 77.78 86.67 92.59 100.00 95.00 86.21 87.50 90.00 94.74 100.00 87.27 94.44 100.00 94.12 94.12 85.71 100.00 91.67 91.67 NA NA 79.17 NA 90.91 90.91 88.89 NA 85.71 94.44 83.33 90.91 NA 95.35 94.12 NA 93.33 NA 91.67 NA 97.56 92.86 100.00 77.78 NA NA 95.45 88.89 94.12 NA K mutually_exclusive lqf,I_chr3L_7522287_7522807 chr3L + chr3L_7528745_7529810,chr3L_7529870_7530075 chr3L_7528745_7529109,chr3L_7529536_7530075 chr3L_7529811_7529869 chr3L_7529110_7529535 chr3L_7528643_7528744;chr3L_7530076_7530479 33.33 36.36 33.33 35.29 16.67 16.67 53.33 33.33 38.46 21.43 66.67 51.72 20.00 37.50 28.57 41.18 44.44 21.43 22.22 36.00 53.33 12.50 26.09 21.05 25.00 40.00 23.53 60.00 66.67 33.33 23.33 25.00 33.33 42.11 33.33 52.94 35.29 33.33 15.79 80.00 20.00 33.33 30.00 35.00 37.50 28.57 27.78 50.00 38.10 20.00 25.00 22.22 50.00 27.27 29.41 30.77 41.67 46.67 K alternative_donor Moe,I_chrX_8774434_8791759 chrX - chrX_8785657_8785766 chrX_8785657_8785727 chrX_8785595_8785656;chrX_8785767_8785791 95.98 95.58 97.20 98.61 95.98 96.79 97.82 97.27 94.64 97.45 97.14 97.96 99.06 97.22 96.97 92.79 96.05 94.53 96.91 94.89 98.11 76.69 92.65 96.53 97.36 97.81 99.69 95.42 97.65 93.62 97.74 94.44 80.26 96.54 95.48 100.00 95.70 95.43 95.42 96.42 95.35 94.20 95.09 97.12 91.04 93.75 92.57 97.96 95.22 93.46 97.28 96.20 93.67 94.05 96.06 95.96 93.60 90.77 K alternative_acceptor foxo,RI_chr3R_9883151_9883462,I_chr3R_9907161_9907218 chr3R + chr3R_9882747_9883595 chr3R_9882747_9883462 chr3R_9882717_9882746;chr3R_9883596_9883829 91.66 NA NA NA NA NA NA NA 83.33 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD I_chr3R_23771063_23772599,CG4951,RI_chr3R_23778808_23778861 chr3R - chr3R_23778808_23778865 chr3R_23778808_23778861 chr3R_23778715_23778807;chr3R_23778866_23778961 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 1.85 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 2.22 0.00 0.00 0.00 1.15 0.00 1.52 1.47 0.56 0.00 0.00 0.00 0.84 1.23 1.41 0.76 0.83 0.70 0.00 0.00 0.67 0.62 0.71 1.56 0.00 0.00 1.06 0.00 0.00 1.27 1.20 0.00 0.00 0.32 K jcn_only_AD Cctgamma chr3R + chr3R_12473409_12473557;chr3R_12473318_12473557;chr3R_12473479_12473557;chr3R_12473424_12473557;chr3R_12473464_12473557 chr3R_12473420_12473557 chr3R_12473558_12473651;chr3R_12473311_12473317 94.32 94.66 91.43 95.81 93.07 98.33 93.87 90.10 93.99 90.70 95.00 91.14 96.67 91.74 89.81 95.36 92.86 94.32 95.88 93.15 93.81 98.56 98.06 96.12 95.16 93.06 96.97 98.96 95.00 94.44 92.17 93.33 84.13 92.62 92.75 89.83 98.60 97.30 96.23 96.83 84.85 93.55 92.05 96.39 93.65 90.24 96.51 90.38 92.35 96.46 98.46 98.85 94.12 98.39 95.28 98.15 97.87 93.22 K alternative_acceptor RanBPM chr2R + chr2R_6320709_6320779 chr2R_6320709_6320776 chr2R_6320544_6320708;chr2R_6320780_6320970 4.93 4.65 4.76 5.67 5.48 2.47 3.39 5.00 4.02 5.26 1.54 2.26 3.61 1.37 2.53 3.06 5.26 6.00 4.29 6.18 1.56 11.45 6.37 5.97 5.71 6.45 7.69 5.61 8.60 5.50 7.25 1.59 5.88 3.42 6.25 7.32 4.79 3.23 4.76 5.56 6.25 4.62 3.08 4.93 7.37 5.10 3.60 4.39 5.03 3.54 4.03 6.59 3.70 4.76 4.95 6.41 3.51 4.17 K alternative_donor glo,I_chr3R_7644679_7644739,REI_chr3R_7644679_7644932,RI_chr3R_7644683_7644880,I_chr3R_7647556_7647628 chr3R - chr3R_7644683_7644880;chr3R_7644683_7644932;chr3R_7644683_7644908;chr3R_7644683_7644743 chr3R_7644683_7644739 chr3R_7644583_7644682;chr3R_7644933_7644980 3.87 3.03 4.92 7.41 4.35 4.26 10.71 6.82 4.72 0.00 8.33 4.46 6.25 7.41 4.62 1.57 8.00 NA 6.45 3.17 6.45 5.15 1.74 5.77 3.92 10.87 2.97 1.15 7.69 1.89 7.41 2.44 3.41 3.81 1.61 0.00 3.39 4.44 3.08 3.08 3.64 4.46 5.00 0.00 3.64 3.57 1.64 4.24 4.48 3.51 4.11 2.38 1.19 3.45 7.14 2.35 3.30 1.67 K intron_retention wgn chrX - chrX_18519851_18522506 chrX_18519850_18519851;chrX_18522506_18522507 chrX_18519671_18519850;chrX_18522507_18522741 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 1.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.96 0.53 0.00 0.00 0.00 1.72 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.76 0.63 0.00 0.62 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 K jcn_only_AA RpL15 chr3LHet + chr3LHet_2397992_2398127 chr3LHet_2397992_2398049 chr3LHet_2397802_2397991;chr3LHet_2398128_2398454 83.17 83.33 74.29 92.47 NA 73.91 89.39 88.24 78.05 NA NA 85.71 80.43 88.57 NA 80.52 82.14 86.36 90.00 72.58 70.83 98.80 85.19 76.47 96.55 95.65 NA NA 80.56 70.83 90.24 78.12 NA 81.36 95.24 68.18 NA NA NA 83.78 87.50 78.57 74.07 87.18 NA 86.96 75.68 91.30 82.86 72.50 83.02 85.71 NA 81.48 NA 83.33 68.75 90.00 K intron_retention CG34413,RI_chr2R_20769295_20770153,I_chr2R_20771136_20772048,I_chr2R_20773500_20774745 chr2R + chr2R_20769206_20770153 chr2R_20769205_20769206;chr2R_20770153_20770154 chr2R_20769195_20769205;chr2R_20770154_20770253 82.57 NA NA NA NA NA 83.33 NA 86.67 NA NA 80.00 NA NA 54.55 NA NA NA NA 100.00 NA 96.77 85.71 72.73 88.89 NA 73.68 88.89 78.95 NA NA NA NA NA NA 80.00 69.23 NA NA 92.86 NA 69.23 NA NA NA NA NA NA 81.82 NA 88.89 NA NA NA NA NA NA NA K jcn_only_AA gammaCop,rod chr3R + chr3R_27398001_27398222 chr3R_27398001_27398219 chr3R_27397876_27398000;chr3R_27398223_27398878 40.77 39.19 43.75 48.41 45.24 42.86 40.43 35.71 44.09 46.81 40.38 37.85 37.04 29.76 44.79 39.66 45.10 43.53 39.08 42.93 50.98 43.50 45.16 33.33 42.86 41.38 36.23 43.16 38.30 34.33 43.53 34.85 45.92 44.54 37.89 40.77 43.75 33.96 50.70 40.62 42.50 40.54 38.96 37.21 47.95 40.00 43.75 39.67 37.14 52.05 34.59 29.63 41.24 27.50 43.48 33.73 27.91 50.00 K intron_retention r-l chr3R - chr3R_16898728_16898787 chr3R_16898727_16898728;chr3R_16898787_16898788 chr3R_16898211_16898727;chr3R_16898788_16899200 8.86 5.88 4.00 7.32 4.76 0.00 8.00 9.43 4.39 0.00 0.00 3.30 0.00 5.71 3.92 9.52 2.56 5.71 0.00 3.30 10.00 65.67 21.25 10.64 20.00 11.76 15.07 6.74 9.76 26.32 5.71 21.21 22.58 2.63 20.00 5.71 8.91 13.25 11.88 8.86 37.04 5.95 0.00 10.00 20.00 21.28 15.56 21.43 4.88 12.07 14.29 8.89 0.00 14.29 1.82 10.94 5.88 6.52 K intron_retention CG4769 chr3L + chr3L_5354126_5354592 chr3L_5354125_5354126;chr3L_5354592_5354593 chr3L_5353977_5354125;chr3L_5354593_5354725 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.43 0.00 0.00 0.00 0.00 0.45 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.50 0.23 0.00 0.13 0.00 0.00 0.35 0.00 0.00 0.00 0.42 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD sar1,I_chr3R_18185148_18185246 chr3R + chr3R_18182521_18183252;chr3R_18182490_18183252;chr3R_18182467_18183252 chr3R_18182472_18183252 chr3R_18183253_18183393;chr3R_18182460_18182466 88.28 89.33 85.34 87.58 84.09 85.66 89.45 89.41 88.34 93.15 87.86 87.91 87.15 89.18 90.31 89.02 87.67 89.22 87.90 90.56 89.38 92.00 89.19 88.98 83.17 89.40 86.46 79.73 86.21 80.68 85.76 88.28 85.19 85.71 90.91 81.82 92.75 89.36 90.71 89.02 84.27 90.14 92.00 85.31 86.52 84.62 88.46 81.90 90.46 93.55 88.02 86.07 87.67 85.86 90.66 91.07 88.99 87.37 K intron_retention Shawn_Tyler,CG14213 chrX + chrX_19534273_19534334 chrX_19534272_19534273;chrX_19534334_19534335 chrX_19534181_19534272;chrX_19534335_19534764 0.00 0.00 2.11 0.00 0.00 2.35 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 2.47 0.97 0.91 0.00 0.00 0.00 1.25 4.23 0.56 1.22 0.00 0.72 0.49 0.00 0.00 0.00 0.61 0.00 0.00 0.94 1.47 2.03 0.00 1.24 0.78 0.86 0.47 1.29 0.00 0.43 0.00 0.00 0.00 0.00 0.88 0.50 0.44 1.08 K intron_retention scra,EI_chr2R_3480349_3480405 chr2R + chr2R_3480866_3480922 chr2R_3480865_3480866;chr2R_3480922_3480923 chr2R_3480644_3480865;chr2R_3480923_3481286 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive Slip1,RI_chr4_684967_689045,I_chr4_685717_686576,RI_chr4_685717_689045,RI_chr4_687548_689045 chr4 + chr4_684967_689045,chr4_689201_689755 chr4_684967_686576,chr4_687559_689755 chr4_689046_689200 chr4_686577_687558 chr4_684914_684966;chr4_689756_690313 100.00 100.00 100.00 33.33 100.00 66.67 100.00 100.00 86.36 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 86.36 100.00 100.00 100.00 100.00 100.00 NA 88.24 57.14 100.00 75.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Ir40a,F_chr2L_22189560_22189744 chr2L - chr2L_22189688_22189744 chr2L_22189687_22189688;chr2L_22189744_22189745 chr2L_22189579_22189687;chr2L_22189745_22189844 0.00 NA NA NA NA NA 9.09 NA 0.00 NA NA NA NA NA NA NA NA NA NA 13.33 NA 0.00 9.09 NA NA NA NA 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA NA NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 3.92 0.00 K intron_retention cher,I_chr3R_12943024_12948119 chr3R - chr3R_12917947_12918008 chr3R_12917946_12917947;chr3R_12918008_12918009 chr3R_12917268_12917946;chr3R_12918009_12920040 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.11 0.26 0.22 0.00 0.15 0.49 0.00 1.03 1.87 0.61 0.34 0.60 0.00 0.00 0.34 0.24 0.00 0.15 0.39 0.13 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.19 0.00 0.00 K alternative_donor Ten-a chrX + chrX_12097912_12098171;chrX_12097945_12098171;chrX_12098012_12098171;chrX_12098030_12098171 chrX_12098018_12098171 chrX_12098172_12098306;chrX_12097907_12097911 33.33 NA 16.67 NA NA NA NA 25.00 25.00 NA NA NA NA NA 33.33 33.33 NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 25.00 NA NA 33.33 33.33 NA 25.00 33.33 NA NA NA NA 40.00 33.33 NA 33.33 NA NA NA NA NA NA NA K intron_retention Fps85D,I_chr3R_5194729_5194776,I_chr3R_5216796_5218450 chr3R - chr3R_5216796_5218462 chr3R_5216795_5216796;chr3R_5218462_5218463 chr3R_5216696_5216795;chr3R_5218463_5218550 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 2.35 0.00 0.00 0.00 0.00 0.00 1.79 0.00 K cassette sdt,E_chrX_8118081_8119115,C_chrX_8118081_8119117,I_chrX_8131684_8131842 chrX + chrX_8118081_8121903 chrX_8118081_8118817;chrX_8120117_8121903 chrX_8118818_8120116 chrX_8117989_8118080;chrX_8121904_8122131 54.39 54.69 48.94 85.42 60.98 53.66 66.67 68.18 65.00 52.94 33.33 61.29 54.84 61.29 58.33 81.08 13.64 42.42 69.70 72.16 40.00 60.53 55.41 44.93 50.00 62.86 54.39 44.00 46.81 51.72 64.71 46.88 67.11 71.70 44.68 50.85 57.14 46.67 57.43 33.33 60.00 62.50 69.23 50.00 46.81 43.18 53.66 50.00 62.34 45.10 47.95 51.22 63.64 41.67 64.29 52.63 45.83 69.23 K intron_retention RI_chrX_1405134_1408515,CG32810 chrX + chrX_1408702_1408759 chrX_1408701_1408702;chrX_1408759_1408760 chrX_1408516_1408701;chrX_1408760_1408825 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor shi,RI_chrX_15786633_15786860,RE_chrX_15793108_15795563 chrX + chrX_15786474_15786860;chrX_15786603_15786860;chrX_15786285_15786860;chrX_15786615_15786860;chrX_15786394_15786860 chrX_15786200_15786860 chrX_15786861_15786960;chrX_15786192_15786199 5.00 7.14 5.26 13.79 0.00 0.00 2.86 9.52 12.24 0.00 20.00 3.12 5.00 4.55 5.00 2.50 5.00 0.00 12.90 5.13 7.69 0.00 5.00 9.09 0.00 11.11 0.00 0.00 0.00 6.67 6.67 0.00 5.26 13.46 0.00 0.00 12.50 0.00 0.00 10.34 11.11 10.00 5.56 10.53 0.00 8.33 0.00 9.09 7.32 20.00 0.00 0.00 0.00 0.00 0.00 0.00 20.00 0.00 K alternative_donor CG4589,I_chr2R_20402394_20402462,I_chr2R_20402394_20402706 chr2R - chr2R_20402394_20402809;chr2R_20402394_20402753 chr2R_20402394_20402785 chr2R_20402294_20402393;chr2R_20402810_20402813 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA NA 0.00 NA NA 0.00 NA 0.00 NA 14.29 0.00 NA NA NA NA NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K jcn_only_AD CaMKI,I_chr4_467862_471815,I_chr4_471136_473243,I_chr4_472116_472527,I_chr4_473338_473410,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_472081_473243 chr4_472116_473243 chr4_473244_473337;chr4_472016_472080 10.00 15.62 24.00 7.50 NA NA 18.75 3.39 11.63 NA NA 10.26 NA NA 4.17 14.29 22.73 NA 5.13 22.58 10.71 15.00 NA 4.35 NA NA 0.00 NA NA NA 11.11 NA NA 9.38 8.70 NA NA NA 0.00 6.67 11.11 0.00 11.11 NA NA 10.00 NA 8.33 6.15 NA 15.15 NA NA NA 13.16 9.09 NA 8.82 K intron_retention CG2316,I_chr4_208796_210623,I_chr4_209150_214298,I_chr4_209369_210623,I_chr4_209875_210055,I_chr4_209875_210628,I_chr4_209875_213969,RI_chr4_209875_214450,I_chr4_210688_211303,RI_chr4_210688_211927,I_chr4_210688_213991,I_chr4_210688_214019,I_chr4_210688_214049,RI_chr4_210688_214450 chr4 - chr4_209875_210623 chr4_209874_209875;chr4_210623_210624 chr4_209775_209874;chr4_210624_210636 0.00 NA 0.00 13.64 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K intron_retention tws,I_chr3R_5960899_5960978,CG6241 chr3R - chr3R_5959310_5960026 chr3R_5959309_5959310;chr3R_5960026_5960027 chr3R_5958937_5959309;chr3R_5960027_5960067 29.17 33.33 41.18 24.49 15.38 29.17 21.95 21.28 23.26 NA 30.77 30.23 42.86 29.17 28.00 22.45 13.64 15.38 21.43 33.33 35.00 66.67 33.33 30.77 25.00 23.08 40.00 43.75 39.13 36.36 18.52 40.00 44.44 21.43 25.00 42.86 NA NA 45.45 38.89 21.43 22.92 20.00 25.00 28.57 38.10 NA 42.86 26.32 NA 23.08 NA NA NA 32.00 6.67 NA 39.39 K alternative_acceptor CG7616 chr3L + chr3L_11163250_11163321 chr3L_11163250_11163309 chr3L_11163241_11163249;chr3L_11163322_11164146 76.92 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 76.92 K intron_retention CG14868,CG6136 chr3R - chr3R_11195671_11196040 chr3R_11195670_11195671;chr3R_11196040_11196041 chr3R_11195435_11195670;chr3R_11196041_11196089 100.00 NA 100.00 92.86 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA K jcn_only_AA CG13124,RI_chr2L_9906444_9907607,RI_chr2L_9907784_9908405,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907545_9907607 chr2L_9907548_9907607 chr2L_9907608_9907707;chr2L_9907051_9907544 50.00 57.14 51.81 53.42 41.59 50.00 48.09 50.20 51.62 45.31 51.61 51.19 56.69 47.69 56.38 53.05 47.11 51.11 50.58 53.12 46.27 54.78 48.31 50.00 44.63 50.00 46.28 60.87 48.05 52.45 50.00 53.57 50.53 55.64 44.87 49.11 50.72 46.28 55.14 53.20 42.25 49.81 39.13 52.17 54.46 53.30 49.00 49.15 54.24 51.72 49.52 46.81 47.95 47.69 52.22 50.00 40.19 47.56 K intron_retention CG14299 chr3R - chr3R_14584415_14584462 chr3R_14584414_14584415;chr3R_14584462_14584463 chr3R_14583690_14584414;chr3R_14584463_14584568 4.17 NA 9.52 7.14 0.00 NA 0.00 11.76 0.00 NA NA 1.96 3.57 0.00 0.00 7.14 0.00 13.33 8.70 6.78 NA 0.00 2.38 0.00 NA 9.09 10.71 23.53 13.16 4.35 5.71 NA 0.00 6.25 0.00 10.53 0.00 0.00 0.00 4.00 NA 7.69 0.00 0.00 NA 9.09 10.53 5.63 0.00 NA 0.00 14.29 NA NA 6.25 NA NA NA K intron_retention CycA chr3L - chr3L_11820906_11820969 chr3L_11820905_11820906;chr3L_11820969_11820970 chr3L_11820297_11820905;chr3L_11820970_11821217 0.00 0.00 0.00 0.00 0.00 0.00 2.54 0.43 0.48 0.00 0.00 0.84 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.00 1.12 0.67 0.00 0.00 2.78 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 K jcn_only_AA CG12024,REI_chr3L_1857404_1857509 chr3L + chr3L_1857404_1857464;chr3L_1857404_1857512 chr3L_1857404_1857509 chr3L_1857304_1857403;chr3L_1857513_1857609 31.03 39.02 38.64 26.53 29.79 24.44 30.77 48.94 31.96 31.08 39.02 35.11 28.57 39.29 31.25 23.81 24.24 19.44 37.50 33.66 21.05 27.16 29.90 26.97 34.15 33.33 37.80 23.26 20.48 26.32 28.57 19.30 33.85 32.31 43.10 28.57 24.44 34.94 33.71 21.15 21.15 31.33 26.67 25.88 25.58 35.38 36.78 30.00 33.33 39.08 30.68 33.93 28.57 33.85 36.11 31.03 35.11 27.03 K intron_retention CG4552 chr2L + chr2L_1131182_1131263 chr2L_1131181_1131182;chr2L_1131263_1131264 chr2L_1129819_1131181;chr2L_1131264_1132413 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 1.33 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 K intron_retention CG2947 chrX + chrX_3684110_3684162 chrX_3684109_3684110;chrX_3684162_3684163 chrX_3684002_3684109;chrX_3684163_3684369 100.00 NA NA 93.33 NA NA 94.74 100.00 100.00 NA NA 100.00 NA 90.91 NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG9086,CEI_chrX_16859981_16861527,I_chrX_16861895_16862053 chrX - chrX_16861895_16862542 chrX_16861895_16862053 chrX_16861795_16861894;chrX_16862543_16862684 5.08 3.57 2.86 3.12 NA 4.35 6.00 12.07 8.33 0.00 14.29 5.88 2.86 3.57 0.00 10.67 3.70 0.00 10.26 11.69 0.00 5.41 9.76 4.76 NA 13.64 0.00 NA NA 4.55 8.93 NA NA 3.39 9.38 8.11 12.00 NA NA 13.16 NA 10.00 0.00 0.00 NA NA NA 0.00 5.49 NA 6.90 NA NA NA 0.00 NA NA NA K cassette CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_261025_263086 chr4_261025_261321;chr4_261460_263086 chr4_261322_261459 chr4_260940_261024;chr4_263087_263108 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 91.67 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 90.91 100.00 100.00 100.00 93.33 100.00 85.71 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Hcf,I_chr4_390281_391716,I_chr4_391783_391844,I_chr4_391787_391885,I_chr4_391984_392875 chr4 + chr4_390281_391716;chr4_387389_391716 chr4_390591_391716 chr4_391717_391782 84.13 82.14 89.55 61.54 73.33 72.92 80.00 89.44 80.43 84.62 86.11 70.45 78.79 83.87 78.26 78.40 84.13 75.44 79.21 77.12 95.83 87.50 86.44 85.71 88.10 71.01 78.43 75.00 76.92 83.33 80.95 85.71 90.91 78.75 92.11 79.07 80.65 88.37 80.60 88.07 86.00 85.91 89.71 92.31 71.43 88.71 93.75 89.66 85.81 91.30 87.76 82.50 70.73 89.66 89.81 80.43 86.96 87.83 K intron_retention CG6126 chr3R - chr3R_12025617_12028512 chr3R_12025616_12025617;chr3R_12028512_12028513 chr3R_12024982_12025616;chr3R_12028513_12028864 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 6.67 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.92 NA 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 K alternative_donor CG5976 chr3L + chr3L_20467744_20468664 chr3L_20468598_20468664 chr3L_20468665_20469897;chr3L_20467566_20467743 100.00 90.91 100.00 100.00 100.00 100.00 100.00 89.47 95.24 100.00 100.00 100.00 100.00 100.00 91.67 93.75 90.91 100.00 91.67 100.00 91.67 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 90.00 100.00 85.71 100.00 100.00 90.91 88.89 92.86 90.00 100.00 93.75 K jcn_only_AA EDTP chr2R - chr2R_13320630_13320695 chr2R_13320636_13320695 chr2R_13320696_13320839;chr2R_13320279_13320629 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 96.00 97.83 NA 100.00 98.11 100.00 100.00 NA 100.00 NA NA 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 93.10 100.00 100.00 NA 100.00 100.00 96.77 100.00 100.00 95.45 100.00 100.00 100.00 NA K intron_retention CG3714,I_chr2L_4190825_4191774,I_chr2L_4192969_4193324,I_chr2L_4195905_4196470,I_chr2L_4196780_4197306,RI_chr2L_4196780_4197951,I_chr2L_4196815_4197306,I_chr2L_4196815_4197951 chr2L - chr2L_4196780_4197306 chr2L_4196779_4196780;chr2L_4197306_4197307 chr2L_4196715_4196779;chr2L_4197307_4197338 96.82 90.91 94.74 96.55 100.00 NA 97.00 100.00 100.00 100.00 91.67 96.15 100.00 100.00 92.86 100.00 94.12 100.00 100.00 100.00 100.00 95.00 95.24 93.75 95.45 100.00 95.83 96.00 94.12 94.74 96.15 NA 94.12 96.88 100.00 100.00 92.86 93.33 90.00 95.45 100.00 96.77 100.00 95.83 88.89 100.00 100.00 100.00 96.55 100.00 100.00 100.00 NA NA 92.86 100.00 100.00 NA K alternative_acceptor CG8709,I_chr2R_4027128_4027182,I_chr2R_4027682_4027747,RI_chr2R_4029534_4029599,I_chr2R_4030580_4030746,I_chr2R_4035901_4043493 chr2R - chr2R_4028119_4028185 chr2R_4028122_4028185 chr2R_4028186_4028252;chr2R_4028019_4028118 31.73 33.33 32.26 37.50 33.33 27.59 26.19 33.77 33.33 27.66 25.71 32.73 36.36 37.78 31.51 33.33 28.26 32.69 30.65 31.73 33.33 32.46 32.32 27.96 23.21 26.76 30.71 25.42 31.25 29.76 30.99 34.92 29.76 31.71 26.79 34.33 30.15 33.78 30.58 28.16 30.77 33.03 31.91 30.84 22.73 30.11 30.00 34.21 35.63 37.50 25.23 41.86 31.25 32.20 34.15 31.88 33.90 34.29 K alternative_donor alpha-Man-I,I_chrX_10218352_10219759,I_chrX_10218390_10219759 chrX - chrX_10218390_10219816;chrX_10218390_10219823;chrX_10218390_10219708;chrX_10218390_10219759 chrX_10218390_10219846 chrX_10218290_10218389;chrX_10219847_10219859 8.71 20.00 NA 8.33 NA 0.00 0.00 8.33 7.69 NA 16.67 6.67 11.11 14.29 0.00 12.50 16.67 14.29 16.67 10.00 NA 0.00 20.00 16.67 NA 0.00 14.29 NA NA 0.00 0.00 NA 0.00 9.09 20.00 25.00 NA NA 16.67 0.00 NA 11.11 0.00 NA NA 16.67 NA 0.00 7.69 NA 0.00 0.00 0.00 NA 11.11 NA 0.00 16.67 K alternative_donor Cg25C,I_chr2L_5029811_5029873 chr2L + chr2L_5029747_5030136;chr2L_5029637_5030136 chr2L_5029811_5030136 chr2L_5030137_5030237;chr2L_5029620_5029636 56.52 76.92 52.00 34.48 39.13 40.91 58.33 53.85 50.98 69.23 80.95 71.74 57.89 55.00 48.28 66.67 52.63 39.29 43.75 57.63 65.62 50.00 73.91 81.82 70.00 54.55 64.29 60.00 56.52 50.00 31.43 33.33 54.55 44.23 61.54 57.14 66.67 75.00 85.71 51.28 60.00 32.22 55.56 53.12 38.46 60.00 83.33 42.37 39.74 60.00 89.47 63.64 33.33 80.00 37.50 76.92 83.33 36.73 K jcn_only_AD mys,I_chrX_7958795_7961094 chrX + chrX_7955904_7957872;chrX_7955908_7957872;chrX_7955759_7957872;chrX_7956114_7957872;chrX_7955901_7957872;chrX_7956125_7957872;chrX_7955967_7957872 chrX_7955914_7957872 chrX_7957873_7958492;chrX_7955741_7955758 14.29 21.77 16.98 10.48 9.34 15.69 12.03 11.14 12.28 5.48 15.42 12.94 4.62 13.11 10.62 13.35 12.62 5.80 10.71 13.42 15.25 12.22 21.52 19.68 14.29 12.24 29.94 17.72 14.11 17.81 11.34 11.61 15.63 13.75 20.71 25.16 17.12 20.45 22.33 21.29 15.25 11.18 13.16 15.31 13.22 15.69 18.03 12.21 12.63 18.99 24.90 16.28 17.67 32.76 10.48 20.45 22.46 10.97 K alternative_donor CG3107 chr2R + chr2R_978147_979376 chr2R_978248_979376 chr2R_979377_979733;chr2R_978101_978146 12.40 NA NA 18.75 NA 6.67 5.56 9.09 14.29 NA NA 7.41 NA NA NA 13.04 NA NA 15.38 28.57 NA NA NA NA NA NA NA NA NA NA 14.29 NA NA 20.00 NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA 7.41 NA NA NA NA NA 11.76 NA NA NA K alternative_donor jim,I_chr3L_22791582_22791898 chr3L - chr3L_22792549_22793124 chr3L_22792549_22793040 chr3L_22792351_22792548;chr3L_22793125_22793884 84.00 73.33 85.00 70.45 88.24 85.71 86.67 83.33 83.72 90.00 70.00 84.00 93.75 75.00 81.82 83.33 81.25 72.73 85.71 78.79 85.71 83.67 72.73 89.47 76.47 83.33 79.31 92.86 80.95 70.59 84.21 90.91 93.33 75.00 86.67 84.62 76.74 77.42 84.85 86.49 88.89 88.89 83.33 94.74 92.31 73.33 93.33 86.96 90.62 78.95 80.00 76.47 92.31 76.47 88.89 88.89 93.33 83.33 K intron_retention CG33232,I_chr3L_2484838_2495010,CG1146,noncoding_10153 chr3L + chr3L_2489010_2490979 chr3L_2489009_2489010;chr3L_2490979_2490980 chr3L_2488983_2489009;chr3L_2490980_2492250 33.02 NA NA 34.78 NA 23.08 50.00 55.56 42.31 NA NA 31.25 NA 36.36 NA 18.75 NA NA 30.77 29.41 NA 35.71 45.45 NA NA NA NA 58.82 NA NA NA NA 17.65 26.32 NA NA NA NA NA 43.48 20.00 29.17 50.00 23.81 13.33 46.15 NA 22.73 37.93 NA NA NA NA NA 46.67 NA NA 12.50 K jcn_only_AD CG5004,E_chrX_17024712_17024996 chrX + chrX_17019966_17020033 chrX_17019978_17020033 chrX_17020034_17020118;chrX_17019909_17019965 87.50 NA 87.50 88.00 NA NA NA 85.71 96.67 NA NA 84.62 NA NA NA NA 90.00 NA NA 78.05 NA NA NA NA NA NA NA NA NA NA NA NA NA 86.96 NA NA NA NA NA NA NA 91.43 NA NA NA NA NA NA 86.11 NA NA NA NA NA 88.00 NA NA NA K multi_cassette CG40263,F_chr2RHet_1265687_1293040,F_chr2RHet_1298459_1298703,F_chr2RHet_1298459_1311408,F_chr2RHet_1298885_1299622,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1286572_1324445 chr2RHet_1286572_1292103;chr2RHet_1292187_1293055;chr2RHet_1293175_1324445 chr2RHet_1292104_1292186;chr2RHet_1293056_1293174 chr2RHet_1286565_1286571;chr2RHet_1324446_1324530 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG2116 chrX + chrX_8025600_8025655 chrX_8025599_8025600;chrX_8025655_8025656 chrX_8023773_8025599;chrX_8025656_8025816 98.51 100.00 97.37 100.00 96.15 100.00 100.00 98.18 100.00 100.00 100.00 96.61 100.00 100.00 97.50 100.00 95.45 96.55 96.30 99.04 95.45 97.37 98.36 98.04 100.00 100.00 98.04 96.88 100.00 98.11 100.00 97.47 97.06 98.04 100.00 98.08 98.57 100.00 97.18 98.91 97.98 98.65 100.00 100.00 96.04 97.94 98.55 98.84 98.51 98.11 98.39 100.00 100.00 98.51 100.00 98.33 100.00 98.25 K intron_retention aru,I_chr2L_864795_867505,snoRNA:Me28S-U1230 chr2L - chr2L_865061_865826 chr2L_865060_865061;chr2L_865826_865827 chr2L_864877_865060;chr2L_865827_865847 90.45 90.00 94.44 95.83 83.33 100.00 77.78 93.75 84.44 NA 88.89 90.91 88.46 95.65 89.47 95.83 95.45 75.00 95.65 90.91 87.50 92.86 NA NA NA 93.75 NA NA 95.24 93.75 93.33 93.75 100.00 91.11 80.00 84.62 NA NA NA 87.50 86.36 93.33 84.21 90.00 86.67 96.43 NA 87.18 90.91 88.89 90.00 88.89 NA NA 90.00 90.00 NA 92.11 K intron_retention CG5214,I_chr3R_7070385_7070508 chr3R + chr3R_7072116_7072179 chr3R_7072115_7072116;chr3R_7072179_7072180 chr3R_7071810_7072115;chr3R_7072180_7072686 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8108,EI_chr3L_9859462_9859590,I_chr3L_9860845_9860917,chr3L_9860918_9861213.0 chr3L + chr3L_9860845_9861353 chr3L_9860844_9860845;chr3L_9861353_9861354 chr3L_9860745_9860844;chr3L_9861354_9862035 10.26 9.28 16.25 25.00 14.81 7.89 22.41 18.56 13.25 11.54 5.00 11.20 20.00 10.00 10.64 14.49 10.00 7.78 17.31 14.94 15.49 7.25 9.09 11.68 16.95 8.08 13.33 13.33 8.89 9.17 33.59 6.06 4.49 13.13 12.36 9.17 5.00 6.45 8.40 10.40 8.20 11.17 15.25 19.05 5.88 8.28 10.00 6.13 8.63 14.13 8.76 10.17 7.08 10.26 14.46 14.15 6.00 2.45 K intron_retention betaTub60D chr2R + chr2R_20193662_20198244 chr2R_20193661_20193662;chr2R_20198244_20198245 chr2R_20193402_20193661;chr2R_20198245_20198353 0.54 0.33 0.00 1.05 0.73 1.53 0.83 1.11 0.46 0.00 0.83 0.44 1.61 1.54 0.64 1.69 1.16 0.00 0.48 0.20 0.00 0.73 0.91 0.90 1.52 0.37 0.54 1.76 3.54 0.00 0.70 0.00 0.00 0.83 0.80 0.71 0.47 0.00 0.23 0.76 0.00 0.81 0.00 0.36 0.26 0.23 0.00 0.82 1.10 0.00 0.48 0.70 0.00 0.00 0.00 0.57 0.57 0.00 K jcn_only_AA wge chr3R - chr3R_18539090_18539306;chr3R_18539087_18539306 chr3R_18539117_18539306 chr3R_18539307_18539565;chr3R_18538527_18539086 98.28 94.44 98.46 99.07 98.67 96.30 94.79 100.00 99.36 100.00 100.00 98.26 100.00 98.00 98.53 98.25 98.36 98.39 95.65 98.73 98.00 98.39 97.73 95.31 97.96 98.25 89.39 96.55 98.11 100.00 95.83 100.00 100.00 98.98 93.94 100.00 94.19 100.00 96.91 98.97 100.00 98.70 100.00 100.00 98.00 97.87 100.00 100.00 97.79 100.00 96.47 97.56 91.67 100.00 97.06 98.28 98.08 95.65 K alternative_acceptor mura,RI_chr3R_5373093_5377292,I_chr3R_5375533_5376618,RI_chr3R_5380786_5380850 chr3R - chr3R_5367732_5372519 chr3R_5368647_5372519 chr3R_5372520_5372875;chr3R_5367401_5367731 60.00 50.00 71.43 66.67 62.50 60.00 55.00 57.14 60.87 51.72 40.00 63.64 100.00 41.67 77.78 55.00 55.56 75.00 63.64 63.64 43.75 74.19 60.00 50.00 60.00 66.67 46.67 100.00 67.74 73.33 63.64 57.14 75.00 73.33 80.00 66.67 50.00 40.00 47.37 83.33 87.50 48.15 60.00 53.57 85.71 87.50 40.00 82.35 57.89 40.00 64.29 50.00 55.56 66.67 60.00 42.86 40.00 80.00 K jcn_only_AA 14-3-3zeta,I_chr2R_5987356_5991764,I_chr2R_5987603_5991760,I_chr2R_5988662_5991760,I_chr2R_5988666_5991760,I_chr2R_5988919_5991760,I_chr2R_5988931_5991760,I_chr2R_5990647_5991760,I_chr2R_5991249_5991760,I_chr2R_5991689_5991760,I_chr2R_5993610_5993957,I_chr2R_5993331_5994971 chr2R + chr2R_5987356_5991764 chr2R_5987356_5991760 chr2R_5987330_5987355;chr2R_5991765_5991860 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.82 100.00 100.00 100.00 99.85 100.00 100.00 100.00 100.00 100.00 99.35 100.00 100.00 99.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention G-ialpha65A,I_chr3L_6967574_6972726 chr3L - chr3L_6967574_6972617 chr3L_6967573_6967574;chr3L_6972617_6972618 chr3L_6967474_6967573;chr3L_6972618_6973172 4.39 2.84 7.85 6.30 5.15 6.85 5.81 5.63 5.77 2.30 5.06 7.99 8.72 7.62 8.28 7.11 7.35 1.91 8.68 6.67 5.58 6.09 2.96 2.64 3.40 7.69 3.56 4.23 2.67 3.08 7.52 1.65 2.62 8.67 5.19 2.67 1.38 1.64 2.28 5.31 2.55 5.45 8.17 1.81 1.37 1.83 2.11 6.51 4.82 2.39 4.26 4.39 0.60 1.56 6.90 1.98 1.91 1.94 K intron_retention MTA1-like,I_chr3R_1466287_1466361 chr3R - chr3R_1466287_1466362 chr3R_1466286_1466287;chr3R_1466362_1466363 chr3R_1466199_1466286;chr3R_1466363_1466461 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1902,CG30000,I_chr2R_5495525_5495581 chr2R + chr2R_5491686_5491749 chr2R_5491685_5491686;chr2R_5491749_5491750 chr2R_5491374_5491685;chr2R_5491750_5492116 31.11 30.61 35.21 21.33 31.82 33.33 42.11 30.21 34.69 20.69 43.40 39.33 29.73 34.69 37.93 36.84 26.53 30.36 36.36 33.64 52.00 30.17 37.33 33.33 38.89 30.16 41.33 25.93 20.22 30.51 70.11 24.53 18.75 30.34 31.37 45.59 28.99 12.50 25.33 31.48 31.11 28.44 39.53 23.21 21.43 37.50 28.85 29.46 44.09 31.11 43.75 33.33 31.71 26.47 36.23 22.00 26.67 18.26 K intron_retention CycE,I_chr2L_15729157_15729277,I_chr2L_15737965_15746454 chr2L - chr2L_15745644_15746454 chr2L_15745643_15745644;chr2L_15746454_15746455 chr2L_15745392_15745643;chr2L_15746455_15746554 100.00 NA NA 100.00 NA 100.00 90.91 100.00 93.33 NA NA 100.00 NA 100.00 100.00 92.31 100.00 NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 92.86 88.89 NA NA NA NA 87.50 100.00 NA NA NA NA NA NA NA NA NA N multi_cassette 14-3-3zeta,I_chr2R_5987356_5991764,I_chr2R_5992573_5992699,I_chr2R_5993610_5993957,I_chr2R_5993331_5994971 chr2R + chr2R_5992573_5994971 chr2R_5992573_5993206;chr2R_5993331_5993445;chr2R_5993610_5993828;chr2R_5994303_5994971 chr2R_5993207_5993330;chr2R_5993446_5993609;chr2R_5993829_5994302 chr2R_5992473_5992572;chr2R_5994972_5995071 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.09 100.00 100.00 100.00 100.00 100.00 100.00 89.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention TepII,I_chr2L_7696207_7698724,I_chr2L_7696808_7697006,I_chr2L_7697158_7697976,I_chr2L_7697582_7697976 chr2L - chr2L_7696207_7697006 chr2L_7696206_7696207;chr2L_7697006_7697007 chr2L_7696107_7696206;chr2L_7697007_7697106 0.00 NA NA NA NA NA 4.35 3.70 7.41 NA NA 12.50 NA NA NA 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA 14.29 NA NA 4.17 NA NA 0.00 NA NA NA NA NA NA NA 13.79 0.00 NA NA NA NA NA 9.52 NA NA NA NA NA 0.00 NA 0.00 NA K jcn_only_AA Acf1,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27624356_27624427 chr3R_27624356_27624414 chr3R_27624256_27624355;chr3R_27624428_27624527 100.00 98.04 100.00 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 98.89 97.56 100.00 100.00 99.34 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 97.83 100.00 98.98 97.83 100.00 100.00 100.00 98.90 98.59 100.00 97.74 100.00 100.00 100.00 100.00 100.00 98.73 99.29 99.01 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG4389,I_chr2L_9576230_9576665 chr2L - chr2L_9576230_9576635;chr2L_9576230_9576517 chr2L_9576230_9576665 chr2L_9576130_9576229;chr2L_9576666_9576755 0.00 1.32 2.00 0.00 0.00 0.00 0.00 0.39 0.79 0.00 0.00 0.00 3.68 0.00 0.00 0.00 1.56 0.86 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 1.80 0.00 0.00 0.00 0.89 0.00 0.00 0.00 3.53 0.00 1.29 0.46 3.17 0.37 0.92 0.00 1.16 1.15 0.00 0.79 0.47 0.00 0.00 0.78 0.00 0.00 0.00 0.00 1.20 0.00 K alternative_donor mav,RI_chr4_645290_646129 chr4 - chr4_645563_646134 chr4_645563_645616 chr4_645398_645562;chr4_646135_646229 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Nap1,I_chr2R_19793293_19793378,I_chr2R_19794246_19794473 chr2R - chr2R_19793317_19793378 chr2R_19793316_19793317;chr2R_19793378_19793379 chr2R_19793128_19793316;chr2R_19793379_19793441 0.13 0.00 0.25 0.35 0.00 0.00 0.00 0.17 0.25 0.00 0.00 0.30 0.14 0.00 0.51 0.32 0.00 0.13 0.26 0.26 0.34 0.00 0.22 0.13 0.60 0.28 0.67 0.31 1.65 0.00 0.28 0.29 0.00 0.20 0.00 0.21 0.00 0.00 0.46 0.12 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.31 0.14 0.00 0.00 0.31 0.00 0.50 0.13 0.00 K alternative_acceptor REI_chr3R_10392729_10393060,CG8066,RI_chr3R_10394291_10394385,I_chr3R_10394322_10394381,RI_chr3R_10400799_10401492 chr3R - chr3R_10394291_10394385 chr3R_10394322_10394385 chr3R_10394386_10394481;chr3R_10394222_10394290 99.24 99.53 99.32 99.44 98.91 100.00 98.69 100.00 99.63 100.00 99.17 99.58 99.08 100.00 97.96 98.76 100.00 99.31 99.07 99.14 99.26 99.19 99.46 99.00 97.53 99.21 99.08 99.17 97.35 100.00 99.32 98.84 99.68 99.40 99.24 99.54 99.59 98.45 98.99 100.00 99.11 100.00 98.82 100.00 99.46 99.64 99.26 98.94 99.57 98.84 100.00 99.10 99.04 98.96 99.38 98.75 98.72 98.67 K jcn_only_AA CG6707 chr3L - chr3L_9891303_9891622 chr3L_9891567_9891622 chr3L_9891623_9891693;chr3L_9891029_9891302 0.00 0.00 0.00 0.00 0.00 0.00 2.06 0.00 0.54 2.56 0.00 2.70 0.00 0.00 0.00 1.75 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 2.13 0.00 1.89 0.00 NA 0.00 0.00 0.00 0.00 K jcn_only_AD RhoGDI chr3L + chr3L_19921875_19923914;chr3L_19921911_19923914 chr3L_19922009_19923914 chr3L_19923915_19924114;chr3L_19921868_19921874 94.67 93.90 93.57 96.70 92.20 94.52 97.00 96.82 94.25 93.75 93.26 96.41 90.76 96.95 92.95 91.90 88.73 94.93 91.53 93.08 95.40 94.71 98.31 98.00 93.64 92.66 98.66 99.26 97.92 95.97 92.52 92.21 71.21 91.21 100.00 99.21 94.39 95.56 95.28 91.59 97.40 92.19 94.37 100.00 89.29 97.42 98.56 93.41 94.67 94.21 97.53 95.07 98.31 100.00 92.72 98.33 96.70 94.00 K intron_retention l(2)s5379,I_chr2L_2229179_2229265 chr2L + chr2L_2229814_2229877 chr2L_2229813_2229814;chr2L_2229877_2229878 chr2L_2229638_2229813;chr2L_2229878_2231065 1.21 0.62 0.64 2.24 1.32 0.70 1.87 1.62 1.11 0.00 2.52 1.85 6.29 3.33 1.92 2.97 1.42 1.86 1.63 2.09 0.61 0.96 0.80 0.00 2.61 2.38 2.49 4.90 4.43 0.66 1.26 0.00 0.00 1.15 1.55 1.21 0.47 1.02 0.97 0.00 0.00 2.11 1.45 0.00 0.00 1.53 2.03 0.57 1.96 0.00 0.78 1.74 0.50 0.48 0.97 1.01 2.03 0.41 K jcn_only_AD RI_chr3L_19787260_19787323,Ir76a,RI_chr3L_19799338_19799408,Kap-alpha1 chr3L + chr3L_19795219_19795435 chr3L_19795375_19795435 chr3L_19795436_19795940 91.67 NA NA 71.43 90.00 NA 90.91 90.91 94.74 NA NA 91.67 NA NA 88.00 96.43 NA NA NA 90.00 NA NA NA 95.24 NA NA NA 90.48 NA 95.45 88.89 100.00 90.48 84.00 NA NA 88.46 NA 91.67 91.49 NA 92.59 NA NA 95.24 92.00 NA 100.00 88.24 90.91 95.65 NA 95.83 NA 95.00 NA NA 94.00 K alternative_donor Eaf,RI_chr2R_3294566_3294636,I_chr2R_3294566_3294656,RI_chr2R_3294566_3294714,I_chr2R_3294566_3295255,I_chr2R_3294591_3295244 chr2R - chr2R_3294566_3295176;chr2R_3294566_3295244;chr2R_3294566_3294636;chr2R_3294566_3294638;chr2R_3294566_3295280;chr2R_3294566_3294642;chr2R_3294566_3294714 chr2R_3294566_3294634 chr2R_3294491_3294565;chr2R_3295281_3295302 14.29 7.69 10.53 15.62 9.09 21.43 13.04 13.04 8.11 0.00 12.50 12.12 0.00 14.29 11.11 12.50 16.67 20.00 5.56 12.20 18.75 18.75 14.29 10.53 6.67 7.14 16.67 18.75 17.65 17.65 18.75 21.43 16.00 12.00 15.38 26.32 15.79 8.33 18.18 10.71 16.67 15.38 21.43 6.67 5.88 12.50 7.69 21.74 19.35 15.38 15.00 14.29 7.14 25.00 13.64 16.67 12.50 11.54 K alternative_last_exon CG10602,mRpL13 chr2L - chr2L_18857404_18858951 chr2L_18858463_18858951 chr2L_18857177_18857403 chr2L_18858023_18858462 chr2L_18858952_18859075 96.58 95.45 98.11 98.51 92.68 98.11 94.64 95.71 91.51 96.77 97.50 95.05 82.50 95.65 95.38 91.04 97.06 96.36 97.73 96.58 95.45 96.88 98.61 95.56 97.73 97.92 96.77 96.23 97.37 95.83 98.28 98.25 98.72 97.47 93.48 96.00 94.74 98.18 95.74 96.97 94.83 97.22 97.30 92.86 97.65 95.96 97.47 98.55 95.56 98.48 94.94 93.02 98.82 94.94 95.45 95.29 99.19 99.04 K jcn_only_AA CG9293,RI_chr2L_13386386_13386487,I_chr2L_13394941_13395015 chr2L - chr2L_13386258_13386487 chr2L_13386386_13386487 chr2L_13386488_13386508;chr2L_13386099_13386257 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 K alternative_donor MED26,I_chr4_807836_808040,I_chr4_807836_808089 chr4 - chr4_807836_808040;chr4_807836_808006 chr4_807836_808077 chr4_807736_807835;chr4_808078_808140 96.77 96.00 100.00 85.07 100.00 96.15 91.18 97.22 95.92 94.44 92.86 96.77 96.97 93.94 100.00 96.00 91.67 91.30 97.22 90.00 100.00 100.00 100.00 92.00 100.00 100.00 92.11 96.15 98.11 100.00 100.00 100.00 97.87 92.54 100.00 93.33 NA 87.50 NA 100.00 96.55 94.44 96.30 96.15 NA 98.00 100.00 98.55 91.89 100.00 96.55 100.00 91.67 NA 100.00 NA NA 98.89 K jcn_only_AD regucalcin,I_chrX_11910759_11910811 chrX + chrX_11910755_11910811 chrX_11910759_11910811 chrX_11910812_11910911;chrX_11910659_11910754 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.17 0.13 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.22 0.08 0.00 0.00 0.00 0.00 0.00 0.13 0.09 0.08 0.00 K intron_retention RpL8,I_chr3L_2587513_2587750,I_chr3L_2587600_2587750,RI_chr3L_2587690_2587750,I_chr3L_2589746_2592161 chr3L + chr3L_2587690_2587750 chr3L_2587689_2587690;chr3L_2587750_2587751 chr3L_2587590_2587689;chr3L_2587751_2587850 86.60 NA NA NA NA NA 77.78 NA 66.67 NA NA NA 58.33 NA NA NA NA NA NA 80.00 NA 81.25 NA 90.00 NA NA 87.50 90.00 88.89 NA 55.00 NA NA NA NA NA 90.00 NA 88.89 42.86 88.89 90.91 NA 90.00 NA 72.73 63.64 NA 85.71 80.00 90.91 NA NA 72.73 NA 88.89 90.91 NA K jcn_only_AD miple2,I_chr3L_274251_274594 chr3L + chr3L_274808_274866 chr3L_274814_274866 chr3L_274867_274969;chr3L_274595_274807 0.00 2.86 0.00 0.00 NA 0.00 0.00 1.59 4.08 3.12 NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 1.85 3.77 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 1.49 0.94 1.39 3.45 0.00 1.41 0.00 0.00 0.95 0.00 1.44 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 K jcn_only_AA CG10990,noncoding_23570 chrX - chrX_13646061_13649285 chrX_13649095_13649285 chrX_13649286_13649418 5.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG3419 chr2R + chr2R_20301935_20302017;chr2R_20301935_20301990 chr2R_20301935_20301994 chr2R_20299701_20301934;chr2R_20302018_20302306 6.90 NA NA NA NA NA NA 6.25 6.67 NA NA 7.14 NA NA NA 18.18 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention kappaB-Ras,CG30503 chr2R - chr2R_3331791_3331853 chr2R_3331790_3331791;chr2R_3331853_3331854 chr2R_3331325_3331790;chr2R_3331854_3333022 65.16 NA NA 88.24 NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 85.71 90.91 NA NA NA 77.78 NA 76.92 NA 42.11 54.55 63.64 46.15 NA NA NA NA 66.67 88.89 NA 75.00 NA NA 57.14 62.50 77.78 63.64 58.33 NA NA NA NA NA NA NA NA NA K jcn_only_AD BM-40-SPARC,I_chr3R_22696095_22696231,I_chr3R_22696095_22696291,I_chr3R_22696095_22697413 chr3R - chr3R_22696095_22697647;chr3R_22696095_22696291;chr3R_22696095_22697413 chr3R_22696095_22696231 chr3R_22695995_22696094;chr3R_22697648_22697767 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.02 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.01 0.03 0.00 0.00 0.00 0.00 0.05 0.05 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.01 0.03 0.00 0.00 0.02 0.02 0.00 0.00 0.00 K intron_retention Su(P) chr3L - chr3L_16603930_16603991 chr3L_16603929_16603930;chr3L_16603991_16603992 chr3L_16603612_16603929;chr3L_16603992_16604398 0.00 0.00 0.00 4.11 0.00 0.00 0.00 1.43 0.00 NA 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 NA 3.85 0.00 0.00 0.00 6.06 9.09 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 1.27 0.00 0.00 0.00 4.65 2.94 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette trol,I_chrX_2387249_2389980,I_chrX_2391522_2395659 chrX - chrX_2378793_2380959 chrX_2378793_2380089;chrX_2380276_2380959 chrX_2380090_2380275 chrX_2378650_2378792;chrX_2380960_2382046 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Rab7,CG33108,LSm3 chr3R + chr3R_19822428_19822487 chr3R_19822427_19822428;chr3R_19822487_19822488 chr3R_19822319_19822427;chr3R_19822488_19822737 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 1.35 0.00 0.00 0.00 0.00 2.15 8.16 0.00 0.00 0.00 0.00 0.00 1.15 0.78 0.00 0.00 0.00 0.00 0.69 0.89 0.00 0.00 0.56 0.00 0.00 0.00 0.57 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 K intron_retention MRP,I_chr2L_12727117_12729243,F_chr2L_12727117_12736035 chr2L + chr2L_12728242_12737958 chr2L_12728241_12728242;chr2L_12737958_12737959 chr2L_12728173_12728241;chr2L_12737959_12738176 10.78 7.29 11.36 25.00 16.22 13.64 10.42 20.00 10.38 14.29 19.23 17.03 14.74 12.99 15.79 10.62 10.17 6.74 10.78 15.41 24.32 7.69 11.17 9.02 11.36 11.29 11.92 18.33 8.86 12.33 8.79 0.00 12.66 14.18 8.25 10.00 8.05 5.49 10.00 9.91 5.06 11.38 15.69 9.50 8.47 7.37 6.06 19.40 12.33 8.06 11.95 11.43 8.24 6.60 12.36 4.76 5.26 7.07 K intron_retention CG3589 chr2R + chr2R_20672784_20672834 chr2R_20672783_20672784;chr2R_20672834_20672835 chr2R_20672324_20672783;chr2R_20672835_20672935 6.35 0.00 6.67 21.74 NA NA 6.90 6.45 6.67 NA 0.00 6.25 NA NA 6.67 16.67 18.18 NA NA 4.44 NA 0.00 8.33 0.00 8.33 6.67 12.00 6.67 0.00 0.00 0.00 8.00 0.00 7.41 0.00 NA 0.00 7.14 0.00 6.67 0.00 11.90 NA 5.26 11.11 2.86 0.00 NA 6.67 6.67 0.00 0.00 0.00 0.00 0.00 14.29 14.29 0.00 K intron_retention noncoding_21514,CG4025 chrX + chrX_1971181_1971250 chrX_1971180_1971181;chrX_1971250_1971251 chrX_1970994_1971180;chrX_1971251_1971372 1.98 2.27 1.71 0.47 1.02 2.63 1.40 1.56 3.20 0.00 3.39 1.87 2.20 3.03 1.22 1.24 1.10 0.00 2.17 1.41 0.00 2.11 3.86 1.83 3.65 0.00 4.27 4.29 4.31 4.07 0.45 2.11 5.95 0.51 1.14 1.39 5.88 1.46 1.77 3.92 3.23 1.94 0.00 2.83 6.29 2.66 2.03 2.70 0.81 2.96 1.98 2.30 1.66 3.11 0.51 2.16 1.23 1.56 K intron_retention CG31211,I_chr3R_7777267_7777327 chr3R + chr3R_7777215_7777444 chr3R_7777214_7777215;chr3R_7777444_7777445 chr3R_7777167_7777214;chr3R_7777445_7777547 35.23 45.71 33.33 53.85 35.48 33.33 53.19 47.06 35.23 32.00 31.25 33.33 31.37 36.59 36.54 52.83 39.29 35.42 38.78 34.74 47.06 22.22 33.33 33.33 34.62 43.33 52.50 50.00 15.09 30.00 41.67 20.83 14.77 50.79 31.71 55.88 26.92 45.71 26.23 28.09 39.47 35.53 29.27 37.78 20.75 29.69 40.43 28.95 36.00 25.58 44.07 39.29 30.95 32.35 33.33 32.65 37.78 36.71 K intron_retention CG2246,I_chr3R_26421344_26425985,RI_chr3R_26421349_26425985,I_chr3R_26421349_26427017,noncoding_20201 chr3R - chr3R_26421349_26425845 chr3R_26421348_26421349;chr3R_26425845_26425846 chr3R_26421249_26421348;chr3R_26425846_26425897 0.00 4.76 3.85 0.00 0.00 0.00 0.00 0.00 2.63 NA 7.69 0.00 0.00 0.00 10.00 7.14 0.00 14.29 0.00 7.02 5.00 12.50 0.00 0.00 13.33 0.00 11.11 NA 14.29 NA 0.00 0.00 6.67 2.70 0.00 0.00 7.69 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.64 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Oatp74D,I_chr3L_17500359_17500724 chr3L + chr3L_17494579_17500724 chr3L_17500359_17500724 chr3L_17500725_17500824;chr3L_17494545_17494578 0.00 0.00 5.56 2.78 0.00 0.00 3.12 2.56 1.89 NA 0.00 3.45 6.67 5.26 10.00 3.23 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 16.67 20.00 0.00 0.00 0.00 0.00 0.00 2.63 NA 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 NA NA 0.00 0.00 2.38 0.00 0.00 0.00 0.00 NA 5.56 NA 0.00 0.00 K intron_retention bbx chrX + chrX_21236287_21240718 chrX_21236286_21236287;chrX_21240718_21240719 chrX_21234687_21236286;chrX_21240719_21241749 5.75 6.45 7.50 10.20 8.89 0.00 8.93 5.88 7.32 5.26 5.00 6.98 10.53 2.56 4.00 8.20 6.06 4.00 8.89 3.90 5.13 12.50 6.56 6.52 3.23 7.50 4.17 14.81 15.38 4.35 4.00 0.00 0.00 5.88 5.71 8.57 4.08 4.44 4.17 5.36 7.41 5.75 9.68 5.71 10.53 6.06 5.26 2.94 6.52 9.68 4.65 5.56 3.70 3.45 8.70 5.88 2.50 0.00 K intron_retention qkr58E-2 chr2R + chr2R_18304537_18304600 chr2R_18304536_18304537;chr2R_18304600_18304601 chr2R_18303933_18304536;chr2R_18304601_18304701 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.58 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 K alternative_acceptor I_chr3L_22859135_22860499,Ssl1,slif chr3L + chr3L_22872249_22872447 chr3L_22872249_22872305 chr3L_22872189_22872248;chr3L_22872448_22872530 80.00 80.00 NA NA NA NA 62.50 60.00 66.67 NA NA 60.00 NA NA NA 70.00 NA NA NA 75.00 NA NA 83.33 85.71 NA NA 85.71 NA NA 83.33 71.43 57.14 NA 71.43 NA NA 85.71 NA 100.00 90.91 NA 83.33 NA 85.71 NA 100.00 85.71 60.00 64.29 83.33 71.43 71.43 83.33 80.00 NA 85.71 75.00 80.00 K jcn_only_AD CG12393,CG9135 chr2L + chr2L_6048635_6048693;chr2L_6048631_6048693 chr2L_6048627_6048693 chr2L_6048694_6048702;chr2L_6048512_6048626 8.70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 11.54 NA NA NA NA NA NA NA NA 8.70 NA 5.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG1309 chr3L + chr3L_4261306_4261361 chr3L_4261305_4261306;chr3L_4261361_4261362 chr3L_4261291_4261305;chr3L_4261362_4261649 3.77 6.12 2.90 3.03 0.00 4.92 0.00 6.52 4.00 0.00 0.00 6.38 2.94 7.14 4.29 2.99 5.13 0.00 4.65 1.50 0.00 7.14 2.74 5.26 8.82 4.69 1.75 7.55 3.33 0.00 3.77 0.00 5.26 5.00 0.00 6.52 3.12 3.77 2.70 5.48 5.97 4.50 5.13 0.00 5.06 2.67 3.70 3.77 2.86 5.17 3.39 5.00 3.77 7.50 3.17 3.92 4.17 2.44 K intron_retention CG6695 chr3R + chr3R_20483332_20484042 chr3R_20483331_20483332;chr3R_20484042_20484043 chr3R_20483238_20483331;chr3R_20484043_20484133 19.05 13.16 19.05 18.18 12.50 31.58 31.82 26.92 18.37 19.05 NA 29.03 NA 22.22 36.84 47.06 26.32 17.65 36.36 21.57 38.46 19.30 10.53 18.92 20.00 31.25 12.82 39.29 7.14 14.81 46.15 19.23 12.50 16.00 14.81 22.58 10.00 11.76 18.75 19.23 17.50 28.26 15.38 20.00 12.20 21.43 14.29 25.58 27.50 16.33 17.50 20.00 14.89 14.29 24.00 14.29 14.63 20.93 K intron_retention CG3887 chr2L + chr2L_5011336_5011411 chr2L_5011335_5011336;chr2L_5011411_5011412 chr2L_5011184_5011335;chr2L_5011412_5011484 0.00 0.00 0.37 2.82 0.00 0.43 0.80 0.63 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.46 0.87 0.00 0.00 0.00 0.00 0.00 0.86 3.40 3.45 0.63 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.90 0.00 0.42 0.00 0.00 0.00 0.00 0.00 1.05 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 K alternative_donor CG5537,I_chr3L_5804425_5804485 chr3L + chr3L_5804421_5804485 chr3L_5804425_5804485 chr3L_5804486_5804585;chr3L_5804325_5804420 4.17 2.70 2.00 10.14 4.55 5.88 8.82 2.70 3.55 8.33 4.62 2.78 1.69 3.39 4.88 3.26 4.17 4.82 1.41 3.09 3.95 20.83 5.51 2.82 6.15 11.11 5.66 4.88 9.52 2.27 7.78 1.23 8.79 3.81 2.78 18.03 3.50 3.17 3.86 5.11 8.20 4.17 3.39 1.90 4.08 5.17 6.02 5.68 2.27 4.46 5.38 7.46 1.80 4.20 2.04 3.31 3.38 3.81 K cassette CG8929 chr2R + chr2R_16214899_16215831;chr2R_16214899_16215371 chr2R_16214899_16214948;chr2R_16215069_16215371,chr2R_16215069_16215831 chr2R_16214949_16215068 chr2R_16214792_16214898;chr2R_16215832_16216526 11.36 14.29 14.00 10.91 20.00 11.36 16.95 13.56 14.29 13.33 21.43 9.88 17.24 18.92 14.29 12.24 16.67 12.82 14.63 14.29 13.79 1.79 9.52 7.02 5.71 13.64 19.35 11.11 20.00 5.26 14.58 4.17 4.76 17.31 5.00 4.35 8.33 10.81 9.52 13.73 16.67 13.89 17.24 9.68 6.67 3.45 9.52 15.15 10.81 9.30 6.76 11.76 7.89 1.82 8.89 10.00 4.65 8.51 K mutually_exclusive rl,I_chr2RHet_199154_201722,I_chr2RHet_199154_207044,RI_chr2RHet_203476_203577,RI_chr2RHet_203592_207044,R_chr2RHet_207162_232568,I_chr2RHet_232696_247338,RI_chr2RHet_240197_247338 chr2RHet + chr2RHet_199154_207044,chr2RHet_207156_232560 chr2RHet_199154_203348,chr2RHet_203476_232560 chr2RHet_207045_207155 chr2RHet_203349_203475 chr2RHet_199054_199153;chr2RHet_232561_232695 57.14 NA NA 0.00 NA NA 100.00 NA NA NA NA 50.00 NA NA NA 66.67 NA NA NA NA NA NA 50.00 50.00 100.00 50.00 90.00 NA 80.00 NA NA NA NA NA NA 81.25 NA NA NA 57.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA K alternative_donor Rph,I_chrX_10647710_10648325,RI_chrX_10649048_10651427 chrX - chrX_10647710_10651427 chrX_10647710_10648325 chrX_10647610_10647709;chrX_10651428_10651527 12.50 8.33 13.33 12.50 15.38 11.76 5.00 22.22 12.12 0.00 20.00 21.05 12.50 13.33 13.04 25.00 20.00 11.11 14.29 9.09 8.33 5.56 12.50 10.00 NA 14.29 16.67 8.33 0.00 12.50 22.22 NA 0.00 23.53 0.00 NA 0.00 7.14 7.69 16.67 NA 16.00 16.67 6.67 14.29 14.29 0.00 20.00 14.29 20.00 7.69 14.29 10.00 NA 11.11 14.29 0.00 16.67 K alternative_donor sar1,I_chr3R_18185148_18185246 chr3R + chr3R_18182472_18183252;chr3R_18182521_18183252;chr3R_18182467_18183252 chr3R_18182490_18183252 chr3R_18183253_18183393;chr3R_18182460_18182466 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.53 0.00 0.00 0.76 0.00 1.20 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.65 0.00 1.20 1.35 K alternative_acceptor CG11148,I_chr4_882005_882418,I_chr4_885038_885994,RI_chr4_886921_887162 chr4 - chr4_885034_885973 chr4_885038_885973 chr4_885974_886268;chr4_884938_885033 98.48 100.00 100.00 97.50 100.00 100.00 98.33 98.48 97.44 93.33 96.55 98.55 100.00 97.14 100.00 96.72 96.55 100.00 100.00 96.74 100.00 100.00 96.43 95.83 100.00 98.08 97.06 95.00 100.00 96.67 97.30 100.00 97.44 97.06 90.91 100.00 96.43 100.00 100.00 100.00 94.12 98.63 97.22 100.00 90.00 100.00 100.00 100.00 98.86 94.74 96.30 100.00 100.00 88.89 100.00 92.86 100.00 97.50 K intron_retention CG7414,I_chr3L_21819515_21819581 chr3L + chr3L_21819515_21819574 chr3L_21819514_21819515;chr3L_21819574_21819575 chr3L_21819415_21819514;chr3L_21819575_21819852 0.00 0.00 0.00 0.50 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.25 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 K alternative_last_exon vn chr3L - chr3L_5806575_5809750 chr3L_5807967_5809750 chr3L_5806434_5806574 chr3L_5806791_5807966 chr3L_5809751_5809800 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention scu,RhoGAP16F chrX + chrX_17988849_17989117 chrX_17988848_17988849;chrX_17989117_17989118 chrX_17988795_17988848;chrX_17989118_17990486 26.38 NA NA NA NA 36.36 20.00 NA 26.09 NA NA 45.45 NA NA NA 35.71 NA 14.29 NA 35.71 NA NA 30.77 NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA 26.67 NA 26.09 NA NA NA 12.50 NA 20.00 NA NA NA NA NA NA NA NA 36.36 NA K intron_retention CG7712 chr2R - chr2R_6784923_6784976 chr2R_6784922_6784923;chr2R_6784976_6784977 chr2R_6784554_6784922;chr2R_6784977_6785092 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 5.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Topors chr2R + chr2R_14861228_14861287 chr2R_14861227_14861228;chr2R_14861287_14861288 chr2R_14860503_14861227;chr2R_14861288_14861748 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA 11.54 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 K alternative_acceptor rok,RI_chrX_16526333_16526477 chrX - chrX_16521501_16521628 chrX_16521528_16521628 chrX_16521629_16521903;chrX_16521334_16521500 39.71 41.18 48.84 35.19 36.73 40.00 63.64 47.14 41.90 34.43 39.29 40.82 47.37 47.50 45.95 41.67 47.62 48.72 39.39 39.18 47.62 49.50 22.08 31.96 45.00 45.65 27.38 37.50 43.75 28.33 45.65 40.00 32.14 40.79 51.06 71.93 30.67 34.04 39.13 34.48 33.33 42.27 48.65 34.67 28.12 38.78 27.87 35.90 44.57 30.77 36.17 39.71 39.53 29.55 52.83 29.31 30.23 41.67 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2388671_2395659 chrX_2388671_2390808;chrX_2390959_2391350;chrX_2391522_2393243;chrX_2393712_2394269;chrX_2394396_2395151;chrX_2395275_2395659 chrX_2390809_2390958;chrX_2391351_2391521;chrX_2393244_2393711;chrX_2394270_2394395;chrX_2395152_2395274 chrX_2388641_2388670;chrX_2395660_2395759 25.00 NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor Upf1,I_chrX_11799010_11799076 chrX - chrX_11798981_11799067 chrX_11799010_11799067 chrX_11799068_11799388;chrX_11798910_11798980 63.97 65.52 70.97 81.82 56.52 64.29 61.11 62.07 60.71 60.87 53.85 67.31 68.18 81.48 61.29 70.00 69.57 53.85 53.57 63.64 61.11 78.95 72.50 80.77 85.00 69.23 86.21 86.36 83.33 68.00 NA 50.00 70.97 57.45 54.55 30.00 64.58 67.86 64.44 57.50 36.36 56.25 58.62 75.86 85.71 55.00 84.21 43.75 53.97 62.50 52.63 70.00 68.42 91.67 52.78 63.16 51.72 53.33 K jcn_only_AD noncoding_18164,F_chr3R_17192061_17200781,RI_chr3R_17193489_17193631 chr3R + chr3R_17193489_17193631;chr3R_17193407_17193631 chr3R_17193416_17193631 chr3R_17193632_17193731;chr3R_17193389_17193406 80.00 80.95 NA 68.75 NA 76.19 71.79 71.88 75.00 NA NA 78.95 NA 70.00 72.73 85.71 NA NA 80.00 78.12 NA NA 80.00 NA NA 85.00 68.00 85.71 NA NA 79.82 NA NA 73.33 NA NA NA NA 91.30 63.64 85.00 85.00 86.36 76.00 83.33 81.48 NA 91.30 94.74 86.11 76.19 NA NA NA 81.25 92.59 80.00 100.00 K alternative_acceptor MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17395228_17397622 chr2R_17395228_17397610 chr2R_17395018_17395227;chr2R_17397623_17397706 4.84 6.00 0.00 6.90 4.76 7.41 2.70 7.14 5.00 6.12 0.00 5.88 NA 6.67 8.00 14.29 4.35 0.00 NA 3.70 0.00 3.57 5.26 2.06 6.35 10.53 4.48 4.76 1.72 2.08 9.52 6.06 1.75 2.56 1.85 9.09 5.56 4.76 4.26 4.84 8.33 6.15 0.00 3.85 5.56 5.77 2.86 10.81 6.52 1.54 9.68 3.23 2.04 5.26 5.00 1.72 2.35 5.41 K intron_retention ChLD3 chr2L + chr2L_16741889_16741946 chr2L_16741888_16741889;chr2L_16741946_16741947 chr2L_16741366_16741888;chr2L_16741947_16742616 32.00 30.77 14.29 16.67 NA NA 43.75 NA 44.83 NA 50.00 20.00 60.00 NA 14.29 66.67 NA NA 35.71 25.93 NA 100.00 52.94 20.00 NA NA 26.32 NA NA NA 46.15 NA 47.06 26.32 NA NA 33.33 NA 23.08 57.14 NA 32.00 NA 0.00 38.46 25.00 NA 38.46 50.00 23.08 30.00 14.29 NA NA 14.29 35.29 NA NA K jcn_only_AD Pdp,RI_chrX_7626915_7627016,RI_chrX_7626915_7627048 chrX - chrX_7626915_7627020 chrX_7626915_7627016 chrX_7626815_7626914;chrX_7627021_7627116 0.77 0.00 4.00 5.26 0.00 0.00 7.50 7.32 4.69 NA 0.00 0.00 9.09 5.88 13.33 3.23 0.00 0.00 3.85 0.00 7.69 0.00 1.82 0.00 0.00 0.00 2.78 3.33 3.33 3.33 16.67 0.00 NA 2.44 0.00 0.00 0.00 2.04 1.54 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 NA 2.94 2.33 3.45 1.69 4.35 0.00 K intron_retention CG15011 chr3L - chr3L_4258063_4258115 chr3L_4258062_4258063;chr3L_4258115_4258116 chr3L_4257946_4258062;chr3L_4258116_4258274 17.65 NA NA NA NA NA NA 12.50 17.24 NA NA 21.43 NA NA 30.77 22.22 NA NA 33.33 10.53 NA NA NA 12.50 NA NA 7.69 NA NA NA 18.75 NA NA 35.71 NA NA NA NA NA 17.65 NA 23.08 NA 14.29 NA 14.29 NA 16.67 25.00 NA NA NA NA 0.00 NA NA NA 23.08 K intron_retention CG11180 chr2R - chr2R_16508823_16508964 chr2R_16508822_16508823;chr2R_16508964_16508965 chr2R_16508401_16508822;chr2R_16508965_16510679 38.46 53.33 40.00 61.29 NA 50.00 38.46 37.50 42.86 33.33 66.67 30.95 46.67 60.00 52.17 56.67 66.67 26.32 50.00 37.14 NA 30.00 28.00 21.43 27.27 52.94 52.63 50.00 NA NA 45.00 42.86 30.77 47.06 25.00 NA 33.33 NA 26.09 17.65 30.77 43.18 52.63 41.67 34.78 22.58 27.78 33.33 53.33 42.86 27.59 40.00 34.48 33.33 43.48 35.29 28.12 28.30 K intron_retention Pect,I_chr2L_13207997_13208109,E_chr2L_13208285_13210076 chr2L + chr2L_13208778_13209501 chr2L_13208777_13208778;chr2L_13209501_13209502 chr2L_13208665_13208777;chr2L_13209502_13209599 99.17 98.57 100.00 98.92 100.00 100.00 100.00 98.94 100.00 97.62 100.00 98.81 93.75 100.00 100.00 98.65 100.00 100.00 97.87 99.17 100.00 97.92 99.02 98.89 98.04 100.00 99.19 100.00 97.50 100.00 95.24 97.67 96.49 100.00 98.15 100.00 100.00 98.33 100.00 100.00 100.00 99.04 100.00 98.72 97.37 98.28 100.00 100.00 98.91 98.41 97.94 98.31 100.00 100.00 98.36 100.00 98.72 100.00 K intron_retention Vha100-2 chr3R - chr3R_14217240_14217299 chr3R_14217239_14217240;chr3R_14217299_14217300 chr3R_14216981_14217239;chr3R_14217300_14218927 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11163,I_chr2R_1666219_1669711 chr2R - chr2R_1662702_1662764 chr2R_1662701_1662702;chr2R_1662764_1662765 chr2R_1662638_1662701;chr2R_1662765_1662934 1.82 0.00 1.05 5.56 3.92 0.00 4.35 4.48 1.25 0.00 3.90 2.47 1.82 2.15 0.00 0.92 3.12 1.02 1.41 2.21 3.75 2.94 4.04 2.60 0.00 9.21 5.06 NA 11.76 0.00 1.82 0.00 0.00 2.44 1.61 7.14 0.00 0.00 1.90 1.04 9.68 2.82 1.72 0.00 0.00 1.23 1.16 0.00 3.82 0.00 3.23 0.00 2.50 0.00 3.16 2.15 2.01 0.00 K jcn_only_AD vlc chr2R + chr2R_1589953_1590371;chr2R_1589894_1590371;chr2R_1589799_1590371;chr2R_1589805_1590371;chr2R_1590318_1590371;chr2R_1589807_1590371;chr2R_1590294_1590371;chr2R_1589693_1590371 chr2R_1589722_1590371 chr2R_1590372_1590451;chr2R_1589612_1589692 10.71 10.91 11.59 16.19 12.73 14.29 7.22 12.70 9.32 14.29 8.89 10.66 9.46 17.57 19.44 10.74 10.64 23.81 6.25 6.57 5.66 11.43 4.17 12.12 4.55 3.33 6.67 9.68 6.67 3.77 7.14 16.67 6.78 8.70 14.89 1.92 20.00 15.79 8.57 8.54 16.67 11.36 8.22 16.90 19.35 5.56 18.18 11.11 9.29 10.71 14.71 14.55 10.53 11.76 14.77 12.50 8.70 8.70 K intron_retention Ptpmeg,I_chr3L_353688_353782,I_chr3L_355125_355175 chr3L + chr3L_351317_351366 chr3L_351316_351317;chr3L_351366_351367 chr3L_351311_351316;chr3L_351367_351663 94.12 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 88.24 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 87.50 K intron_retention Rsf1 chr2L - chr2L_10263456_10263513 chr2L_10263455_10263456;chr2L_10263513_10263514 chr2L_10262426_10263455;chr2L_10263514_10263582 100.00 97.14 100.00 98.55 96.67 96.67 94.12 96.67 NA 94.44 100.00 98.28 100.00 100.00 100.00 98.11 96.30 97.06 100.00 98.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 97.30 100.00 100.00 100.00 98.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.55 100.00 95.45 98.00 100.00 100.00 100.00 96.88 96.67 96.67 97.06 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG31720,F_chr2L_10234951_10235484 chr2L - chr2L_10236292_10236374;chr2L_10236287_10236374 chr2L_10236257_10236374 chr2L_10236375_10236547;chr2L_10236031_10236256 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA 0.00 0.00 NA 14.29 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA K intron_retention CG2246,I_chr3R_26421344_26425985,I_chr3R_26421349_26427017 chr3R - chr3R_26419572_26420539 chr3R_26419571_26419572;chr3R_26420539_26420540 chr3R_26419542_26419571;chr3R_26420540_26420567 1.94 0.00 5.56 0.00 0.00 0.00 5.00 3.77 3.45 6.67 4.35 6.35 0.00 9.09 2.17 0.00 0.00 0.00 0.00 2.78 0.00 1.94 3.12 0.00 7.41 0.00 3.77 4.44 0.00 3.92 0.00 3.08 6.52 4.44 0.00 4.76 0.94 3.64 5.97 3.77 0.00 2.60 0.00 0.00 3.03 3.12 7.35 2.60 0.00 1.54 0.00 0.00 0.00 6.67 0.00 1.67 1.11 0.91 K intron_retention Sap-r,E_chr3R_26711286_26714646,I_chr3R_26712627_26712857,I_chr3R_26712627_26713553,I_chr3R_26712627_26714606,RI_chr3R_26713323_26714382 chr3R - chr3R_26712627_26714382 chr3R_26712626_26712627;chr3R_26714382_26714383 chr3R_26712527_26712626;chr3R_26714383_26714461 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Arf102F,RI_chr4_1144958_1145393,I_chr4_1152220_1152710,I_chr4_1152585_1152687 chr4 + chr4_1144958_1145061 chr4_1144957_1144958;chr4_1145061_1145062 chr4_1144858_1144957;chr4_1145062_1145324 0.00 0.00 0.00 0.78 0.00 0.00 0.00 1.06 1.26 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG10462 chr2L - chr2L_19733070_19733162 chr2L_19733070_19733154 chr2L_19733001_19733069;chr2L_19733163_19733336 2.13 2.08 0.00 2.33 0.00 0.00 2.74 2.20 1.64 0.00 0.00 2.00 2.33 2.13 4.00 2.74 2.08 0.00 1.67 0.98 0.00 2.86 3.08 3.28 2.78 2.50 1.19 0.00 3.23 0.00 5.00 4.65 3.23 2.30 0.00 4.65 2.38 2.78 1.49 2.82 0.00 1.83 0.00 2.04 2.13 2.22 3.57 2.44 2.04 0.00 4.84 2.70 0.00 2.44 4.92 2.00 1.15 1.82 K intron_retention Gbeta13F,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,RI_chrX_15755345_15755409 chrX + chrX_15755526_15755598 chrX_15755525_15755526;chrX_15755598_15755599 chrX_15755417_15755525;chrX_15755599_15756919 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2813977;chr2R_2814097_2814174;chr2R_2814327_2817753 chr2R_2813978_2814096;chr2R_2814175_2814326 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG7337,I_chr2L_1910010_1910066,RI_chr2L_1911951_1913208,RI_chr2L_1912284_1913208,I_chr2L_1938620_1938887,I_chr2L_1942183_1942233 chr2L + chr2L_1911951_1913208 chr2L_1911950_1911951;chr2L_1913208_1913209 chr2L_1911872_1911950;chr2L_1913209_1913308 55.50 NA NA NA NA NA 65.00 41.67 57.14 NA NA NA 70.00 NA NA 53.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA 57.14 NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor RpS27 chr3R - chr3R_21072088_21072169 chr3R_21072104_21072169 chr3R_21072170_21072238;chr3R_21072035_21072087 100.00 99.96 100.00 99.95 100.00 100.00 100.00 99.94 99.96 100.00 100.00 100.00 99.92 100.00 99.93 100.00 99.91 99.91 99.90 99.95 99.89 100.00 100.00 99.96 100.00 99.89 99.96 99.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.96 99.90 100.00 100.00 100.00 100.00 100.00 99.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.98 100.00 K jcn_only_AA scramb1,I_chr3L_10217325_10217959 chr3L - chr3L_10217325_10217959 chr3L_10217338_10217959 chr3L_10217960_10218059;chr3L_10217225_10217324 100.00 100.00 100.00 100.00 97.50 96.67 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 97.53 97.30 100.00 95.83 98.11 100.00 98.67 96.25 94.44 97.67 97.70 97.96 100.00 98.28 100.00 98.36 95.92 99.00 100.00 100.00 95.00 100.00 100.00 98.39 98.25 100.00 100.00 98.57 96.08 100.00 100.00 100.00 100.00 95.74 97.70 100.00 K alternative_donor beta-Spec chrX + chrX_17551567_17555021 chrX_17551571_17555021 chrX_17555022_17561265;chrX_17551418_17551566 74.13 73.08 80.77 63.46 80.00 66.67 80.43 69.44 75.00 65.00 69.57 68.12 71.05 74.47 65.71 68.35 73.53 81.25 81.13 74.24 83.33 73.33 74.29 76.47 68.18 66.67 71.43 83.33 70.83 65.00 74.07 86.67 80.00 71.23 70.00 82.86 77.78 NA 75.00 69.77 94.12 69.44 76.67 72.41 75.00 55.17 66.67 83.33 79.31 57.14 74.19 75.00 66.67 90.00 78.05 85.71 76.47 67.86 K cassette Haspin chr2RHet + chr2RHet_3200480_3234342 chr2RHet_3200480_3215266;chr2RHet_3215563_3234342 chr2RHet_3215267_3215562 chr2RHet_3200469_3200479;chr2RHet_3234343_3234575 96.00 90.00 100.00 46.43 80.00 100.00 96.30 96.77 97.14 83.33 100.00 84.00 100.00 100.00 81.82 78.79 90.00 87.50 93.75 100.00 100.00 100.00 100.00 100.00 85.71 88.89 100.00 80.00 60.00 100.00 100.00 90.91 88.89 96.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 83.33 85.71 91.67 92.31 90.91 90.00 91.67 100.00 100.00 90.91 100.00 90.91 100.00 95.00 90.48 K alternative_donor RpL18A,I_chr2R_13434492_13434554,I_chr2R_13434492_13434576 chr2R - chr2R_13434492_13434913;chr2R_13434492_13434554 chr2R_13434492_13434576 chr2R_13434392_13434491;chr2R_13434914_13434994 0.00 0.00 0.00 0.08 0.06 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.06 0.06 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.41 0.00 0.17 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.04 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.04 K mutually_exclusive par-1,EFI_chr2R_15361473_15362032,RI_chr2R_15361473_15362035,I_chr2R_15361473_15366246,I_chr2R_15362147_15365120,F_chr2R_15362147_15365138,I_chr2R_15362147_15365165,RI_chr2R_15363358_15365120,I_chr2R_15363358_15366246,I_chr2R_15365210_15370456 chr2R + chr2R_15361473_15366256,chr2R_15366371_15370456 chr2R_15361473_15365138,chr2R_15365210_15370456 chr2R_15366257_15366370 chr2R_15365139_15365209 chr2R_15361373_15361472;chr2R_15370457_15370556 4.76 4.55 2.94 0.00 3.45 0.00 5.08 0.00 2.35 0.00 0.00 4.44 13.33 0.00 3.45 0.00 0.00 0.00 4.76 3.23 4.00 17.02 5.00 5.13 10.00 3.23 7.69 8.70 15.38 6.90 4.00 0.00 12.50 2.17 10.53 8.70 5.26 4.17 5.26 7.14 20.00 4.00 0.00 8.00 10.53 9.09 3.57 22.22 3.51 6.25 5.71 0.00 10.53 6.67 5.26 10.00 5.56 0.00 K intron_retention CG5802 chr3R + chr3R_16964788_16964839 chr3R_16964787_16964788;chr3R_16964839_16964840 chr3R_16964277_16964787;chr3R_16964840_16965301 0.96 0.00 3.03 0.00 2.13 0.00 3.45 1.98 0.00 0.61 1.10 0.69 0.00 1.25 1.67 1.32 1.12 0.00 0.00 2.08 0.00 17.58 0.00 0.00 0.00 0.00 0.67 2.20 2.97 0.00 3.64 3.64 2.60 1.68 3.80 0.00 0.94 0.00 1.22 0.47 3.12 1.22 0.00 0.83 2.38 0.54 2.17 1.61 1.26 1.43 2.44 0.00 0.00 0.00 0.00 0.92 1.81 0.96 K intron_retention PNGase,I_chr2R_1906759_1906817,I_chr2R_1906899_1906977 chr2R + chr2R_1906899_1906957 chr2R_1906898_1906899;chr2R_1906957_1906958 chr2R_1906833_1906898;chr2R_1906958_1907054 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 1.51 0.00 0.00 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 K jcn_only_AD CG7713 chr3R + chr3R_13620860_13621082 chr3R_13620918_13621082 chr3R_13621083_13621361;chr3R_13620788_13620859 34.15 NA NA NA NA NA NA NA 34.15 NA NA NA NA NA NA 59.09 NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Dcp2,F_chr3L_15815909_15816023,F_chr3L_15817090_15817547 chr3L - chr3L_15815115_15815170 chr3L_15815114_15815115;chr3L_15815170_15815171 chr3L_15814221_15815114;chr3L_15815171_15815908 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24.14 2.94 0.00 0.00 0.00 0.00 5.88 73.68 0.00 NA NA 0.00 0.00 4.76 9.09 0.00 0.00 0.00 NA NA 0.00 7.69 NA NA NA NA NA 5.88 NA 3.45 NA NA NA 0.00 NA NA NA K intron_retention Actn chrX - chrX_1920943_1921316 chrX_1920942_1920943;chrX_1921316_1921317 chrX_1919808_1920942;chrX_1921317_1921453 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 7.89 1.72 0.00 0.00 0.00 0.00 3.57 0.00 1.69 2.63 4.00 0.00 0.00 0.00 10.53 0.00 1.54 0.00 0.00 0.00 0.00 0.00 1.85 2.02 0.00 0.00 1.33 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 1.47 0.00 0.00 K cassette rl,I_chr2RHet_199154_201722,I_chr2RHet_199154_207044,RI_chr2RHet_203476_203577,RI_chr2RHet_203592_207044,I_chr2RHet_232696_247338,RI_chr2RHet_240197_247338 chr2RHet + chr2RHet_199154_203348 chr2RHet_199154_200985;chr2RHet_201079_203348 chr2RHet_200986_201078 chr2RHet_199054_199153;chr2RHet_203349_203475 2.33 4.88 3.33 1.23 4.00 2.70 1.11 1.94 2.38 0.00 0.00 2.78 0.00 0.00 1.82 4.95 0.00 3.70 1.72 5.75 3.23 2.56 1.61 2.27 0.00 3.23 2.08 0.00 3.23 0.00 1.72 4.55 10.53 5.62 5.00 0.00 4.17 0.00 7.69 1.69 3.45 2.44 2.33 0.00 5.56 3.92 0.00 0.00 1.92 2.94 1.47 0.00 2.94 0.00 2.00 6.52 2.56 2.94 K intron_retention E(bx),I_chr3L_240127_240176,I_chr3L_246324_246699 chr3L - chr3L_240111_240176 chr3L_240110_240111;chr3L_240176_240177 chr3L_240027_240110;chr3L_240177_240276 80.00 73.81 71.21 81.25 85.71 89.19 61.40 81.40 80.56 80.00 84.62 77.88 78.43 79.66 83.08 84.71 77.78 80.00 81.25 79.38 73.58 79.37 85.26 77.78 87.76 90.16 90.24 90.91 90.14 86.11 81.67 87.04 88.89 79.00 78.57 86.57 83.58 74.29 78.43 70.19 88.14 83.33 83.33 82.46 80.00 73.53 73.68 71.60 81.67 79.07 77.03 74.29 76.32 75.86 85.33 77.27 78.95 82.88 K intron_retention lola,I_chr2R_6380094_6419543,I_chr2R_6380747_6419543,I_chr2R_6394546_6419543,I_chr2R_6394664_6395833,I_chr2R_6397642_6398119,RI_chr2R_6403557_6403850,I_chr2R_6403557_6406705,I_chr2R_6404486_6419543,R_chr2R_6408775_6419537,I_chr2R_6409616_6419543,I_chr2R_6413368_6414281,I_chr2R_6419625_6419686,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6380091_6419543 chr2R_6380090_6380091;chr2R_6419543_6419544 chr2R_6380012_6380090;chr2R_6419544_6419624 32.26 25.93 33.33 36.73 31.03 30.56 41.86 30.77 41.27 41.67 35.71 29.31 47.83 43.33 28.26 55.56 30.77 36.67 26.47 28.05 18.52 15.15 53.12 44.44 47.62 55.17 37.50 65.00 18.92 20.00 33.33 26.47 20.27 27.45 32.26 44.00 50.00 34.62 31.91 27.50 16.67 34.48 33.33 51.85 16.22 17.39 19.23 27.14 33.78 20.00 41.18 47.37 21.88 30.00 22.45 32.26 35.00 14.63 K intron_retention l(3)73Ah chr3L + chr3L_16582058_16582119 chr3L_16582057_16582058;chr3L_16582119_16582120 chr3L_16581734_16582057;chr3L_16582120_16582272 0.00 0.00 0.00 0.00 6.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 2.50 0.00 0.00 0.00 0.00 3.53 0.00 1.47 0.00 0.00 0.00 0.00 6.52 4.35 0.97 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 4.17 0.00 1.83 0.00 8.33 0.00 0.00 1.43 2.70 0.00 2.70 0.00 0.00 0.00 1.89 2.78 2.94 1.41 0.00 0.00 K intron_retention CG10166,CG10165 chr2L - chr2L_19526164_19526220 chr2L_19526163_19526164;chr2L_19526220_19526221 chr2L_19525953_19526163;chr2L_19526221_19526347 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 5.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 K jcn_only_AA CG17002 chr2R + chr2R_2875771_2876087 chr2R_2875771_2876075 chr2R_2875292_2875770;chr2R_2876088_2876423 74.60 79.45 77.55 86.67 84.38 65.91 74.60 81.82 76.70 NA NA 65.28 80.77 60.61 77.78 73.81 75.61 79.07 78.57 75.41 80.00 72.73 75.65 76.06 70.73 75.00 66.67 75.00 68.57 73.58 74.36 58.70 69.23 76.00 79.63 72.73 71.43 68.83 71.59 75.95 84.00 77.63 78.12 82.22 66.10 63.16 65.52 74.29 80.00 73.24 85.29 70.00 71.91 73.74 70.00 53.95 72.95 81.13 K intron_retention raw,I_chr2L_8712599_8712673,I_chr2L_8735201_8735693 chr2L - chr2L_8735201_8735725 chr2L_8735200_8735201;chr2L_8735725_8735726 chr2L_8735101_8735200;chr2L_8735726_8735747 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA NA NA NA 100.00 NA 100.00 NA NA 100.00 100.00 NA NA 100.00 91.67 100.00 NA NA NA NA NA NA NA NA 100.00 100.00 NA 83.33 NA NA NA NA 100.00 NA NA NA NA NA NA 88.89 100.00 92.86 100.00 NA NA NA NA NA NA K intron_retention RpL11,I_chr2R_15330246_15330292,I_chr2R_15330603_15330817,snoRNA:Psi28S-2444 chr2R + chr2R_15330246_15330292 chr2R_15330245_15330246;chr2R_15330292_15330293 chr2R_15330177_15330245;chr2R_15330293_15330304 84.65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.00 NA NA 100.00 89.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 70.00 K alternative_donor Bap,I_chrX_19625275_19625407 chrX + chrX_19625123_19625407 chrX_19625275_19625407 chrX_19625408_19625507;chrX_19625014_19625122 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Nipped-B,I_chr2R_583116_587893,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_583116_586563 chr2R_583116_586007;chr2R_586502_586563 chr2R_586008_586501 chr2R_583016_583115;chr2R_586564_586656 99.03 100.00 98.91 94.20 98.31 98.39 97.71 99.48 99.10 100.00 100.00 100.00 99.05 98.95 100.00 100.00 100.00 98.48 99.16 98.87 98.41 100.00 100.00 98.75 98.53 98.41 99.00 94.52 93.44 100.00 99.32 98.39 100.00 99.48 98.72 98.68 98.44 100.00 100.00 98.37 97.96 98.88 100.00 99.03 96.67 98.55 100.00 99.01 99.49 98.00 99.12 100.00 97.22 100.00 100.00 100.00 100.00 98.61 K jcn_only_AA CG1427,RI_chr3R_1427548_1427635 chr3R + chr3R_1427585_1427681 chr3R_1427585_1427635 chr3R_1427482_1427584;chr3R_1427682_1427704 97.38 100.00 NA NA NA NA NA 100.00 95.65 NA NA 94.55 88.46 NA 86.36 96.43 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 96.15 95.00 100.00 NA 100.00 95.24 92.59 100.00 100.00 93.33 NA NA 96.77 95.00 97.67 97.47 NA 98.00 NA 100.00 97.30 93.02 100.00 96.97 98.00 96.55 97.30 100.00 100.00 100.00 90.91 96.15 96.97 97.06 K intron_retention Keap1 chr3R - chr3R_12901908_12901966 chr3R_12901907_12901908;chr3R_12901966_12901967 chr3R_12901225_12901907;chr3R_12901967_12902224 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 NA NA NA 0.00 12.50 NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389597_9389907 chr2R_9389596_9389597;chr2R_9389907_9389908 chr2R_9389497_9389596;chr2R_9389908_9389954 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 95.00 98.00 96.00 95.65 96.88 100.00 100.00 100.00 97.37 94.34 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.08 100.00 100.00 93.33 100.00 100.00 100.00 100.00 96.72 100.00 100.00 100.00 100.00 100.00 100.00 98.41 100.00 100.00 100.00 94.74 92.31 97.14 100.00 100.00 100.00 K intron_retention bun,I_chr2L_12458224_12458352,I_chr2L_12458224_12460889,I_chr2L_12477167_12504078,I_chr2L_12477167_12507485,I_chr2L_12520177_12536274,I_chr2L_12537393_12537634,RI_chr2L_12540901_12546409 chr2L - chr2L_12458224_12477114 chr2L_12458223_12458224;chr2L_12477114_12477115 chr2L_12458124_12458223;chr2L_12477115_12477166 0.00 0.00 0.00 1.22 3.33 0.00 2.50 0.00 0.00 0.00 0.00 1.85 0.00 1.82 0.00 3.26 0.00 0.00 3.39 1.20 0.00 1.35 1.49 0.00 0.00 0.00 0.00 29.17 0.00 0.00 0.00 0.00 0.00 3.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 2.94 0.00 0.00 K intron_retention Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8107174_8107237 chr2L_8107173_8107174;chr2L_8107237_8107238 chr2L_8107066_8107173;chr2L_8107238_8107425 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.90 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pkc98E chr3R + chr3R_24865713_24866817 chr3R_24865712_24865713;chr3R_24866817_24866818 chr3R_24865708_24865712;chr3R_24866818_24867147 69.23 NA NA NA NA NA 90.00 70.00 69.23 NA NA 63.64 NA NA NA NA NA NA NA 61.54 NA 25.00 NA NA NA NA NA NA NA 63.64 NA NA NA NA NA NA 69.23 NA NA 87.50 NA 88.89 NA NA NA NA NA NA 70.00 NA NA NA NA NA NA NA NA NA K intron_retention CG12404,I_chr2L_12995561_12997461,I_chr2L_13003716_13003971 chr2L - chr2L_12997924_12999726 chr2L_12997923_12997924;chr2L_12999726_12999727 chr2L_12997813_12997923;chr2L_12999727_12999761 1.30 0.00 0.00 1.30 0.00 0.00 6.90 5.19 5.33 0.00 0.00 3.33 0.00 5.26 1.79 0.00 5.26 5.00 0.00 3.26 0.00 1.79 6.25 5.41 0.00 0.00 0.00 12.00 7.69 4.88 3.17 5.41 0.00 2.78 0.00 0.00 0.00 7.69 0.00 3.08 3.03 1.06 2.38 0.00 0.00 1.47 0.00 4.62 2.35 0.00 2.56 0.00 0.00 0.00 3.77 0.00 1.79 0.93 K cassette NaCP60E,I_chr2R_20798977_20799775,I_chr2R_20805053_20805170 chr2R + chr2R_20798977_20799775 chr2R_20798977_20799521;chr2R_20799697_20799775 chr2R_20799522_20799696 chr2R_20798938_20798976;chr2R_20799776_20799875 100.00 100.00 80.00 90.00 NA NA 90.91 100.00 100.00 NA 100.00 100.00 87.50 100.00 100.00 100.00 100.00 83.33 100.00 100.00 100.00 NA NA NA NA 83.33 100.00 80.00 NA 100.00 100.00 NA 85.71 100.00 NA NA 100.00 NA 83.33 100.00 NA 100.00 100.00 NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA 87.50 NA NA 100.00 K intron_retention CG8908,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16156574_16156624 chr2R_16156573_16156574;chr2R_16156624_16156625 chr2R_16156388_16156573;chr2R_16156625_16156651 0.00 NA NA NA NA NA 0.00 NA 5.26 NA NA NA 0.00 NA NA 3.12 NA 0.00 NA 3.57 NA 3.33 0.00 0.00 NA NA NA NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA NA NA NA 0.00 K intron_retention CG7791 chr2R - chr2R_1647619_1647682 chr2R_1647618_1647619;chr2R_1647682_1647683 chr2R_1647553_1647618;chr2R_1647683_1647751 15.10 13.79 13.64 27.27 8.70 4.35 14.29 22.22 9.52 9.09 19.05 11.90 7.14 17.65 15.38 9.52 22.22 22.22 13.64 6.52 16.67 21.05 18.00 13.64 33.33 17.39 24.14 26.67 34.62 21.43 47.62 22.22 12.00 7.41 20.59 42.86 22.22 17.78 18.64 16.22 NA 10.00 7.69 13.95 8.33 10.71 12.82 17.65 16.67 17.24 14.81 13.79 4.00 10.00 17.39 5.00 4.17 8.70 K jcn_only_AD Pcmt chr3R - chr3R_1378768_1378992 chr3R_1378768_1378947 chr3R_1378542_1378767;chr3R_1378993_1379397 3.33 2.72 1.65 4.00 3.08 3.03 3.45 3.60 4.14 3.33 3.12 2.49 7.45 5.19 3.39 5.33 4.69 4.65 5.19 3.00 1.22 12.40 1.88 1.62 1.09 5.66 3.55 3.09 7.95 2.97 2.54 3.73 7.61 4.58 1.08 3.01 1.73 2.54 1.87 3.02 3.97 4.40 5.26 3.45 5.88 2.76 2.65 2.96 5.66 0.98 3.85 3.03 4.32 0.44 2.78 2.04 3.54 6.50 K alternative_acceptor Pfrx,I_chrX_19390217_19400515,RI_chrX_19390217_19403850,RI_chrX_19392914_19400518,RI_chrX_19399882_19400518,I_chrX_19400112_19400515,RI_chrX_19400112_19400518,I_chrX_19400271_19400518 chrX + chrX_19398571_19400518 chrX_19398571_19400515 chrX_19398435_19398570;chrX_19400519_19400615 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor Nhe2,I_chr2L_21122390_21122912 chr2L + chr2L_21128063_21128778 chr2L_21128063_21128739 chr2L_21127850_21128062;chr2L_21128779_21129082 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention ik2 chr2L + chr2L_20678141_20678200 chr2L_20678140_20678141;chr2L_20678200_20678201 chr2L_20678016_20678140;chr2L_20678201_20679308 0.00 0.00 0.00 5.13 0.00 6.67 2.86 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 3.57 9.09 10.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Dsor1,chrX_9141950_9142262.0,chrX_9142356_9142574.0 chrX + chrX_9141687_9142574 chrX_9141942_9142574 chrX_9142575_9143214;chrX_9141618_9141686 100.00 100.00 NA NA NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 NA NA N intron_retention AnnIX,I_chr3R_16895383_16895999 chr3R + chr3R_16893222_16896445 chr3R_16893221_16893222;chr3R_16896445_16896446 chr3R_16893168_16893221;chr3R_16896446_16896495 100.00 100.00 100.00 26.23 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention RpL22,noncoding_21234,snoRNA:Psi18S-531,snoRNA:Psi28S-2179 chrX - chrX_657019_658334 chrX_657018_657019;chrX_658334_658335 chrX_656593_657018;chrX_658335_658556 100.00 100.00 100.00 98.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 97.37 96.30 100.00 95.24 100.00 100.00 100.00 97.56 100.00 100.00 100.00 96.88 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 98.46 95.45 98.04 95.65 100.00 100.00 100.00 100.00 90.91 100.00 96.97 100.00 92.86 95.24 100.00 96.97 97.67 97.14 98.15 K alternative_donor Vha100-2 chr3R - chr3R_14219132_14222507 chr3R_14219132_14222434 chr3R_14218994_14219131;chr3R_14222508_14222727 25.00 NA 30.77 40.48 25.00 31.25 20.59 36.36 21.88 NA 41.67 28.57 13.04 25.00 31.58 24.14 30.00 35.29 26.09 26.47 25.00 20.00 19.05 30.00 NA 23.81 20.00 NA NA 30.00 5.88 NA 35.71 21.43 NA 20.00 NA NA 20.00 14.29 NA 28.95 17.65 NA NA NA NA NA 20.00 NA 7.14 NA 16.67 NA 25.00 NA 25.00 NA K jcn_only_AD Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045251_16046104;chr3L_16045316_16046104;chr3L_16045277_16046104 chr3L_16045275_16046104 chr3L_16046105_16046204;chr3L_16045216_16045250 32.31 38.64 37.04 26.73 39.47 32.31 41.25 29.91 41.67 19.35 47.73 34.86 39.68 36.76 20.90 33.71 36.84 52.63 31.33 28.95 40.74 23.53 31.51 36.96 36.84 33.33 25.42 30.00 35.94 20.27 24.32 17.65 24.39 32.54 26.09 39.53 38.10 19.44 36.11 26.37 30.95 32.50 32.79 29.82 25.64 31.37 26.92 23.68 41.82 45.83 28.85 44.44 24.00 NA 40.24 25.00 NA 16.67 K alternative_donor CG1544 chr3R + chr3R_27022696_27024892 chr3R_27022858_27024892 chr3R_27024893_27025010;chr3R_27022664_27022695 100.00 100.00 92.31 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 95.24 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 93.75 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 K jcn_only_AD scu,RhoGAP16F chrX + chrX_17987656_17989117;chrX_17988131_17989117;chrX_17988127_17989117 chrX_17987638_17989117 chrX_17989118_17990486;chrX_17987544_17987637 3.68 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 2.82 NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA 4.55 NA NA NA NA NA NA NA NA NA K intron_retention Pde8,CG42241,I_chr2R_19563512_19564565 chr2R + chr2R_19559612_19561808 chr2R_19559611_19559612;chr2R_19561808_19561809 chr2R_19559499_19559611;chr2R_19561809_19561865 1.61 2.94 1.56 1.80 3.41 0.93 5.56 1.33 2.36 0.00 4.76 2.23 1.23 0.00 3.48 0.00 3.23 6.25 3.12 2.83 0.00 1.75 1.11 3.43 3.23 4.20 4.06 0.00 3.80 1.14 1.40 1.09 1.77 1.12 1.57 1.15 1.55 0.00 2.49 2.12 2.96 1.63 2.35 1.23 1.59 2.38 0.00 2.12 2.45 2.13 1.10 0.00 0.00 1.23 1.37 0.00 1.45 1.61 K jcn_only_AD beta-Spec chrX + chrX_17551567_17555021 chrX_17551571_17555021 chrX_17555022_17561265;chrX_17551418_17551566 84.09 83.33 87.50 76.36 90.00 79.25 88.18 81.82 83.97 80.00 82.69 78.91 82.14 85.32 77.78 80.00 84.42 89.04 88.80 83.10 90.91 85.32 84.21 85.00 81.13 77.59 83.08 90.32 82.46 77.27 83.47 92.31 89.00 82.42 81.32 91.11 85.00 NA 84.62 81.82 95.74 80.38 85.51 83.82 86.21 71.88 79.41 91.21 87.22 73.33 84.51 86.84 77.78 92.31 86.32 91.67 85.37 81.25 K alternative_donor Rga,I_chr3R_1436346_1436552,I_chr3R_1436346_1437602,I_chr3R_1436346_1437897,I_chr3R_1437726_1437791,Spec2 chr3R - chr3R_1436346_1436552;chr3R_1436346_1437791 chr3R_1436346_1437897 chr3R_1436246_1436345;chr3R_1437898_1437963 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 1.79 0.00 0.00 0.00 0.00 0.00 1.49 0.00 1.56 0.88 1.39 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17660 chr2L - chr2L_1707489_1707563 chr2L_1707488_1707489;chr2L_1707563_1707564 chr2L_1707132_1707488;chr2L_1707564_1707998 93.94 81.82 96.15 95.12 94.74 91.30 85.42 100.00 94.74 75.00 92.00 93.88 95.65 100.00 96.15 90.62 100.00 95.65 96.77 100.00 95.83 89.29 93.94 96.55 87.50 95.24 88.57 85.00 95.45 88.00 96.15 95.83 82.76 84.62 94.74 90.00 87.10 95.24 95.83 85.29 92.86 93.88 95.83 92.31 87.50 97.22 91.67 91.30 94.74 96.43 92.86 94.12 89.47 89.47 91.67 96.97 90.00 97.44 K jcn_only_AD CG1646,RI_chr3R_24638061_24638116,RI_chr3R_24638209_24638280,I_chr3R_24641816_24641874 chr3R + chr3R_24637877_24638116 chr3R_24638061_24638116 chr3R_24638117_24638208;chr3R_24637841_24637876 1.05 0.00 4.35 0.77 1.39 1.54 1.75 2.22 0.00 0.00 1.30 0.57 0.00 3.23 1.05 2.60 1.59 0.00 1.25 0.00 1.28 2.78 0.00 0.00 0.00 1.14 1.92 0.00 0.92 4.17 0.00 1.72 1.42 0.92 0.00 3.23 0.00 0.00 0.00 1.38 0.00 0.55 3.28 2.04 1.75 0.00 2.35 0.88 0.00 2.04 3.80 0.00 3.12 0.00 1.61 0.00 3.23 0.00 K intron_retention CG17646,E_chr2L_1749256_1749517 chr2L + chr2L_1745362_1745718 chr2L_1745361_1745362;chr2L_1745718_1745719 chr2L_1745264_1745361;chr2L_1745719_1746029 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 5.56 NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2388671_2393243 chrX_2388671_2389073;chrX_2389272_2389644;chrX_2389762_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2392054;chrX_2392149_2392515;chrX_2392665_2393243 chrX_2389074_2389271;chrX_2389645_2389761;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521;chrX_2392055_2392148;chrX_2392516_2392664 chrX_2388641_2388670;chrX_2393244_2393291 25.00 NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention I_chr2R_4783150_4783708,Ggamma1,noncoding_5300 chr2R + chr2R_4789028_4789879 chr2R_4789027_4789028;chr2R_4789879_4789880 chr2R_4789007_4789027;chr2R_4789880_4790224 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.90 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG31033,RI_chr3R_25658089_25658914 chr3R - chr3R_25660345_25660467 chr3R_25660344_25660345;chr3R_25660467_25660468 chr3R_25660083_25660344;chr3R_25660468_25660786 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Ctr1A,I_chrX_6557804_6559032,I_chrX_6558480_6559032 chrX + chrX_6556375_6559032 chrX_6556374_6556375;chrX_6559032_6559033 chrX_6556311_6556374;chrX_6559033_6559111 0.00 0.00 0.00 0.00 NA 0.00 3.33 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8232 chr2R + chr2R_4818156_4818214 chr2R_4818155_4818156;chr2R_4818214_4818215 chr2R_4818155_4818155;chr2R_4818215_4818510 4.35 0.00 7.69 2.94 7.41 0.00 4.00 0.00 5.71 0.00 0.00 6.67 0.00 0.00 6.06 7.84 0.00 6.25 4.44 4.55 4.76 5.71 4.26 0.00 0.00 0.00 6.67 NA 19.05 9.68 13.51 15.00 12.50 4.84 5.71 13.33 0.00 0.00 0.00 3.57 16.67 2.86 8.33 0.00 0.00 6.67 0.00 12.50 2.78 6.90 0.00 6.25 0.00 0.00 1.72 7.41 0.00 8.00 K jcn_only_AD CG1399,I_chr2R_3574133_3574191 chr2R - chr2R_3565240_3565502;chr2R_3565240_3565310;chr2R_3565240_3566074;chr2R_3565240_3565403;chr2R_3565240_3565374 chr2R_3565240_3565323 chr2R_3564840_3565239 42.50 45.45 61.54 15.00 29.03 31.25 29.23 21.74 45.45 61.22 58.49 39.02 61.90 29.03 54.05 41.67 36.67 25.00 41.03 47.44 43.40 54.02 27.50 58.00 51.85 42.31 50.00 48.57 35.71 37.29 49.12 40.00 27.54 28.85 36.84 34.62 64.15 45.45 43.48 37.50 38.98 36.36 59.26 46.67 43.59 49.15 57.14 45.10 40.00 43.48 40.98 51.28 11.11 46.34 50.00 42.50 23.81 21.62 K alternative_donor CG7192,RI_chrX_17993756_17994097 chrX - chrX_17993756_17995125 chrX_17993756_17994097 chrX_17993656_17993755;chrX_17995126_17995239 2.00 1.61 2.17 3.28 1.67 2.00 3.17 2.60 1.92 1.92 2.70 2.63 2.56 2.70 1.54 2.50 2.38 2.56 2.56 2.82 2.33 4.44 1.09 1.00 0.00 2.08 2.60 3.23 2.50 1.41 1.75 2.70 2.99 2.90 1.82 1.79 0.00 0.00 1.23 1.92 4.17 0.78 2.33 1.72 2.17 1.43 0.00 2.00 2.70 1.64 0.00 2.00 2.27 1.85 1.92 0.00 1.75 4.08 K jcn_only_AA bip2,RI_chr4_481674_487126,RI_chr4_483128_487126,RI_chr4_486609_487126 chr4 - chr4_485942_487126;chr4_485855_487126 chr4_486609_487126 chr4_487127_487226;chr4_485750_485854 3.03 0.00 7.89 19.05 4.35 NA 1.41 6.67 0.00 NA 0.00 9.21 0.00 0.00 8.11 0.00 3.70 34.21 0.00 4.11 0.00 NA 0.00 0.00 NA 5.00 0.00 NA NA NA 6.82 NA NA 3.17 NA NA 2.38 0.00 5.71 0.00 NA 3.17 3.33 0.00 NA 4.35 4.35 NA 1.54 NA 3.03 3.45 NA NA 0.00 NA NA NA K intron_retention C1GalTA,I_chr2L_8945896_8950977 chr2L - chr2L_8945535_8950769 chr2L_8945534_8945535;chr2L_8950769_8950770 chr2L_8945358_8945534;chr2L_8950770_8951200 63.64 63.64 55.56 80.00 NA NA 57.89 75.00 70.97 NA NA NA NA 60.00 70.00 56.25 41.67 NA 72.73 80.00 NA NA NA NA NA 60.00 NA NA NA NA NA NA NA 76.47 NA NA NA NA NA NA NA 66.67 63.64 NA NA NA NA NA 55.00 NA NA NA NA NA NA NA NA NA K intron_retention RpL12,E_chr2R_19948229_19948395,I_chr2R_19948517_19948682 chr2R + chr2R_19948273_19948335 chr2R_19948272_19948273;chr2R_19948335_19948336 chr2R_19948204_19948272;chr2R_19948336_19948410 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.03 0.00 0.00 0.03 0.00 0.00 0.03 0.02 0.00 0.04 0.00 0.03 0.02 0.01 0.02 0.02 0.00 0.02 0.10 0.24 0.20 0.00 0.02 0.00 0.00 0.00 0.02 0.04 0.00 0.00 0.02 0.02 0.03 0.02 0.00 0.00 0.00 0.02 0.01 0.05 0.05 0.04 0.08 0.00 0.02 0.02 0.00 0.03 0.05 0.03 K jcn_only_AA Zyx102EF,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1081261_1081366;chr4_1081286_1081366 chr4_1081280_1081366 chr4_1081367_1081379;chr4_1081180_1081260 20.00 NA NA NA NA NA 20.00 19.23 10.87 NA NA 10.00 NA NA NA 19.44 NA NA NA 28.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 20.83 NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA K intron_retention CG34413,I_chr2R_20770882_20770948,F_chr2R_20770891_20770943,I_chr2R_20771136_20772048,I_chr2R_20773500_20774745 chr2R + chr2R_20770738_20770800 chr2R_20770737_20770738;chr2R_20770800_20770801 chr2R_20770600_20770737;chr2R_20770801_20770881 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.67 6.56 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor hppy,I_chr2R_15066378_15066915,I_chr2R_15105700_15106080,I_chr2R_15106144_15108248 chr2R + chr2R_15066378_15066881;chr2R_15066378_15066915 chr2R_15066378_15067003 chr2R_15066360_15066377;chr2R_15067004_15067015 62.02 57.89 58.33 44.00 62.50 66.67 34.48 35.00 50.00 50.00 50.00 58.33 33.33 42.86 66.67 55.56 58.82 62.50 66.67 71.43 42.86 75.00 68.97 60.00 61.11 61.54 52.63 77.78 83.33 57.14 60.00 NA 53.85 47.83 61.11 70.59 63.16 73.68 77.78 75.00 70.00 52.17 60.00 83.64 55.56 80.00 70.59 86.21 64.10 50.00 65.62 66.67 76.92 NA 63.16 75.00 NA 75.00 K intron_retention I_chr3R_11826508_11826910,GATAe chr3R + chr3R_11844318_11844380 chr3R_11844317_11844318;chr3R_11844380_11844381 chr3R_11843987_11844317;chr3R_11844381_11844611 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 91.67 NA 100.00 NA 100.00 NA NA NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K alternative_donor CG13295,I_chr3L_6067590_6067643 chr3L - chr3L_6067590_6067647 chr3L_6067590_6067643 chr3L_6067490_6067589;chr3L_6067648_6067743 0.00 NA NA 0.00 NA 0.00 0.00 0.00 4.55 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA 3.12 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA 2.70 NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA NA NA NA K alternative_donor ena chr2R + chr2R_15029352_15029711;chr2R_15029276_15029711 chr2R_15029330_15029711 chr2R_15029712_15029859;chr2R_15029150_15029275 14.89 14.81 14.29 25.42 16.67 28.12 11.94 19.67 14.44 10.00 13.04 29.67 16.22 17.39 31.71 9.86 12.20 16.00 22.45 24.36 20.00 13.33 12.20 9.38 11.11 20.00 4.44 8.33 30.00 13.79 17.02 16.67 9.52 20.27 12.50 10.81 14.81 11.11 13.64 12.50 15.38 22.06 16.28 16.13 25.00 19.05 11.11 13.64 15.38 11.11 14.89 17.24 10.53 15.38 18.87 17.39 10.00 11.76 K jcn_only_AD I_chrX_15223901_15223968,HDAC6,I_chrX_15232958_15233665 chrX + chrX_15232699_15232869 chrX_15232738_15232869 chrX_15232870_15232877;chrX_15232108_15232698 100.00 NA 100.00 NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 100.00 100.00 NA 100.00 NA 100.00 NA NA NA NA NA NA NA NA 95.45 100.00 NA NA 95.65 NA 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 100.00 96.77 100.00 100.00 NA 100.00 90.91 95.24 NA 100.00 97.30 N intron_retention MAPk-Ak2,RI_chrX_5655618_5656137,I_chrX_5656715_5657427,I_chrX_5656715_5657893,I_chrX_5656715_5657974 chrX - chrX_5656678_5658126 chrX_5656677_5656678;chrX_5658126_5658127 chrX_5656615_5656677;chrX_5658127_5658138 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 69.57 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA kuz,E_chr2L_13550294_13551106,I_chr2L_13550421_13550984,CE_chr2L_13558833_13594255,I_chr2L_13636762_13637287 chr2L + chr2L_13550421_13551141 chr2L_13550421_13550984 chr2L_13550321_13550420;chr2L_13551142_13551156 6.92 NA NA 4.76 NA NA NA 9.09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention RpL3,E_chr3R_7047964_7050565,I_chr3R_7049970_7050189,snoRNA:Me28S-G2017 chr3R + chr3R_7049970_7050212 chr3R_7049969_7049970;chr3R_7050212_7050213 chr3R_7049870_7049969;chr3R_7050213_7050289 0.09 0.05 0.12 0.11 0.15 0.15 0.08 0.14 0.10 0.08 0.08 0.11 0.14 0.13 0.12 0.00 0.11 0.03 0.08 0.08 0.06 0.10 0.10 0.09 0.05 0.03 0.18 0.56 0.08 0.04 0.11 0.07 0.10 0.13 0.07 0.00 0.08 0.10 0.05 0.09 0.06 0.07 0.16 0.00 0.07 0.09 0.11 0.09 0.22 0.16 0.09 0.14 0.09 0.07 0.20 0.10 0.05 0.10 K jcn_only_AD Psn,RI_chr3L_20430213_20430358 chr3L + chr3L_20427346_20427647;chr3L_20427445_20427647 chr3L_20427403_20427647 chr3L_20427648_20427812;chr3L_20427187_20427345 80.09 81.71 78.20 79.15 77.22 80.22 86.70 74.25 82.01 78.79 78.21 80.81 69.17 78.29 76.34 85.62 69.57 85.31 77.08 80.18 84.14 85.17 79.73 79.19 79.45 77.78 78.88 76.15 61.11 83.54 72.85 75.34 80.00 78.57 75.00 83.23 85.91 80.09 82.82 77.96 82.50 81.04 85.82 83.13 81.33 80.25 79.22 86.24 81.06 84.34 78.98 86.13 84.80 83.20 80.11 79.92 79.30 82.93 K alternative_donor E(bx),I_chr3L_239186_239264,I_chr3L_246324_246699 chr3L - chr3L_239186_239264 chr3L_239186_239242 chr3L_239086_239185;chr3L_239265_239329 98.15 100.00 98.46 98.91 97.78 98.15 98.70 98.96 99.10 100.00 97.50 97.67 100.00 98.08 98.44 98.81 95.45 98.21 98.67 97.75 98.04 96.67 95.71 100.00 97.22 100.00 98.25 100.00 97.78 97.83 94.03 97.62 97.06 95.05 97.30 96.23 100.00 97.37 98.25 98.00 96.67 98.10 96.23 98.18 95.74 98.25 97.22 98.68 99.13 100.00 98.51 100.00 96.00 100.00 98.57 97.96 97.14 100.00 K intron_retention AGO2 chr3L + chr3L_15551218_15551349 chr3L_15551217_15551218;chr3L_15551349_15551350 chr3L_15550832_15551217;chr3L_15551350_15551438 0.00 0.00 0.00 0.74 0.00 0.00 0.73 0.99 0.88 0.00 1.05 0.67 0.55 0.00 0.00 0.55 0.00 0.00 0.00 0.19 0.00 0.00 0.55 0.36 0.00 0.00 0.30 0.00 0.61 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.95 0.51 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 K cassette CG11168,I_chr3R_20745770_20745849,I_chr3R_20745983_20746038 chr3R + chr3R_20745770_20746038 chr3R_20745770_20745842;chr3R_20745962_20746038 chr3R_20745843_20745961 chr3R_20745670_20745769;chr3R_20746039_20746053 25.00 NA NA NA NA NA NA 14.29 NA NA NA 50.00 NA NA NA NA NA NA NA 30.00 NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA 25.00 NA NA NA NA NA 23.08 NA NA NA NA NA NA NA NA NA 15.38 K intron_retention Syn1,I_chr3L_21753613_21754057 chr3L - chr3L_21741302_21753130 chr3L_21741301_21741302;chr3L_21753130_21753131 chr3L_21741092_21741301;chr3L_21753131_21753615 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 6.25 NA 0.00 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 6.67 0.00 0.00 8.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 2.94 0.00 0.00 0.00 0.00 0.00 NA 2.70 0.00 5.88 0.00 0.00 0.00 NA 4.35 0.00 0.00 14.29 0.00 0.00 0.00 1.56 K jcn_only_AA I_chr2R_17169674_17170491,CG10069,I_chr2R_17169897_17170495,I_chr2R_17170432_17170491,I_chr2R_17171765_17171886 chr2R + chr2R_17169897_17169960;chr2R_17169897_17170491 chr2R_17169897_17170495 chr2R_17169889_17169896 1.47 2.17 4.41 2.38 0.00 1.47 2.27 1.56 1.08 2.63 2.50 1.75 3.92 0.00 0.00 1.39 0.00 2.27 0.00 0.00 0.00 0.00 1.25 2.35 1.85 0.00 1.45 0.00 1.11 3.03 1.56 5.26 1.09 1.05 1.85 2.22 2.75 1.41 0.00 2.53 0.00 2.73 2.50 1.72 2.08 0.00 0.00 1.55 1.96 0.00 1.22 0.00 5.45 0.00 1.72 0.00 2.08 1.20 K intron_retention CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9903942_9904003 chr2L_9903941_9903942;chr2L_9904003_9904004 chr2L_9903379_9903941;chr2L_9904004_9904216 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 1.10 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA cerv,RI_chrX_15471783_15471843 chrX - chrX_15471783_15471843 chrX_15471799_15471843 chrX_15471844_15471943;chrX_15471683_15471782 73.87 NA NA NA NA NA 78.57 80.00 NA NA NA 75.00 NA NA NA 59.09 NA NA NA 80.65 NA NA 57.69 82.86 NA NA NA NA NA NA 30.77 NA NA 75.00 NA NA NA NA NA NA NA 65.38 NA NA NA 60.87 NA NA 80.00 NA NA NA NA NA NA 72.73 57.14 NA N multi_cassette Slip1,RI_chr4_684967_689045,I_chr4_685717_686576,RI_chr4_685717_689045,RI_chr4_687548_689045 chr4 + chr4_684967_686576 chr4_684967_685613;chr4_685932_686085;chr4_686263_686576 chr4_685614_685931;chr4_686086_686262 chr4_684914_684966;chr4_686577_686676 27.78 NA NA NA NA NA NA NA NA NA NA NA 55.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG40045,RI_chr3L_24023955_24028531,RI_chr3L_24023958_24028536,I_chr3L_24024771_24028531,I_chr3L_24025959_24028531,I_chr3L_24028601_24028670 chr3L + chr3L_24024039_24028531 chr3L_24024038_24024039;chr3L_24028531_24028532 chr3L_24024032_24024038;chr3L_24028532_24028600 42.86 NA NA 38.46 NA NA 27.78 42.86 42.86 NA NA 46.15 NA NA NA 42.86 NA NA NA 56.25 NA NA NA NA NA NA NA 50.00 NA NA NA NA NA 58.33 NA NA NA NA NA 24.32 NA NA NA NA NA NA NA NA 65.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG3883 chr2L - chr2L_815413_815474 chr2L_815422_815474 chr2L_815475_815878;chr2L_815275_815412 87.50 NA NA NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA NA 88.89 87.50 NA NA NA NA 75.00 85.71 NA NA NA NA NA NA 100.00 70.00 90.00 87.50 NA NA NA 87.50 NA NA NA 92.31 66.67 NA 87.50 NA NA NA NA NA NA 83.33 K jcn_only_AD CG8468 chr2R + chr2R_10107616_10108112;chr2R_10107548_10108112;chr2R_10107621_10108112 chr2R_10107651_10108112 chr2R_10108113_10108270;chr2R_10107405_10107547 2.16 4.76 1.09 3.20 4.59 4.12 3.29 3.87 3.06 1.72 4.48 0.63 0.77 3.30 2.35 5.00 4.35 2.44 1.99 4.78 2.72 2.35 1.22 2.60 3.90 6.00 3.17 1.94 0.00 0.29 1.87 1.61 0.37 2.33 2.30 3.25 4.80 2.08 5.80 1.08 0.00 1.20 4.05 1.69 1.14 1.50 1.13 0.25 1.63 0.00 2.16 3.66 0.61 1.02 3.33 1.84 1.80 1.83 N jcn_only_AD RhoGAP18B chrX - chrX_19038625_19040000 chrX_19038625_19038713 chrX_19038597_19038624;chrX_19040001_19040175 0.00 38.46 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41.25 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 45.24 0.00 28.26 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention rl,I_chr2RHet_199154_201722,I_chr2RHet_199154_207044,RI_chr2RHet_203476_203577,RI_chr2RHet_203592_207044,I_chr2RHet_232696_247338,RI_chr2RHet_240197_247338 chr2RHet + chr2RHet_198760_198981 chr2RHet_198759_198760;chr2RHet_198981_198982 chr2RHet_198753_198759;chr2RHet_198982_199153 88.89 87.50 88.89 88.24 NA 87.50 89.74 88.89 80.00 NA NA 95.65 90.00 85.71 87.50 75.00 NA NA 93.75 95.00 50.00 NA 100.00 NA NA 88.89 100.00 NA NA NA 87.50 NA NA 85.71 NA 100.00 NA NA NA 80.00 NA 81.48 77.78 92.31 NA NA NA NA 86.67 NA 91.67 100.00 NA NA 90.00 87.50 88.89 NA K alternative_acceptor CG17233,I_chr3L_20232803_20232962,RI_chr3L_20232898_20232962 chr3L - chr3L_20232648_20232962;chr3L_20232645_20232962;chr3L_20232711_20232962 chr3L_20232714_20232962 chr3L_20232963_20233016;chr3L_20232147_20232644 57.14 37.50 58.33 76.92 40.00 53.85 54.55 55.17 64.00 83.33 55.56 71.43 45.45 40.00 52.38 54.55 57.14 66.67 42.86 68.29 50.00 57.69 67.57 61.54 78.57 38.46 69.57 62.50 73.33 64.00 58.33 76.92 60.00 46.67 53.33 52.00 71.43 28.57 60.00 59.26 69.23 57.89 53.85 50.00 50.00 63.64 50.00 60.87 56.10 90.48 42.86 42.11 82.61 33.33 40.00 36.84 57.14 54.17 N intron_retention CG30193,CG30190 chr2R + chr2R_18815153_18817321 chr2R_18815152_18815153;chr2R_18817321_18817322 chr2R_18815039_18815152;chr2R_18817322_18817596 100.00 100.00 100.00 78.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 89.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD lok,RI_chr2L_20063248_20063377 chr2L + chr2L_20062013_20062147 chr2L_20062064_20062147 chr2L_20062148_20062305;chr2L_20061782_20062012 45.33 50.00 37.04 56.25 35.48 43.75 53.25 32.35 50.00 37.50 48.15 56.10 68.00 48.89 57.14 37.35 48.15 45.00 53.70 37.04 46.94 44.23 32.76 51.79 41.03 58.00 53.57 60.61 32.84 25.00 29.69 20.00 34.94 30.95 42.31 22.22 55.26 42.50 51.85 25.17 54.43 45.54 61.70 58.21 48.68 43.59 46.94 40.91 41.59 32.26 45.33 62.79 24.14 17.86 49.30 48.48 54.84 20.51 K alternative_donor sbb,I_chr2R_14193641_14243004,noncoding_7736,RI_chr2R_14243561_14244282,I_chr2R_14243561_14244715 chr2R - chr2R_14243561_14244642;chr2R_14243561_14244715 chr2R_14243561_14244596 chr2R_14243461_14243560;chr2R_14244716_14244766 21.82 NA 37.50 21.43 NA NA 36.36 27.78 13.79 NA NA 23.53 15.38 20.00 NA 27.27 33.33 14.29 20.00 20.00 NA 22.22 7.14 NA NA 16.67 NA NA NA NA 20.00 NA NA 29.41 NA NA NA NA NA NA NA 25.00 12.50 NA NA NA NA NA 23.53 NA NA 28.57 NA NA 40.00 NA 20.00 NA K jcn_only_AA blp,EI_chr3R_11759655_11759701,Sap47 chr3R + chr3R_11759655_11759724 chr3R_11759655_11759721 chr3R_11759632_11759654;chr3R_11759725_11759801 91.18 94.59 95.65 92.19 87.10 91.67 90.24 97.78 89.74 93.55 90.32 91.09 97.22 90.48 94.64 89.08 90.48 90.57 95.24 93.13 89.47 86.89 91.30 91.84 91.18 90.38 98.00 95.00 95.92 91.07 90.00 88.46 89.61 90.72 82.98 85.37 87.76 75.00 92.68 95.12 95.00 95.12 95.45 89.36 94.74 91.18 83.67 94.67 93.46 94.44 92.59 92.16 92.68 88.00 88.57 90.14 92.54 87.33 K jcn_only_AD F_chrX_15764251_15765393,CG16952,RI_chrX_15764587_15765393,I_chrX_15766003_15766047 chrX + chrX_15764432_15765393;chrX_15764522_15765393;chrX_15764247_15765393;chrX_15764599_15765393 chrX_15764620_15765393 chrX_15765394_15765493;chrX_15764236_15764246 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention CG10107,CG10103 chr3L - chr3L_6740090_6740201 chr3L_6740089_6740090;chr3L_6740201_6740202 chr3L_6739971_6740089;chr3L_6740202_6740494 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 6.25 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 K intron_retention CG14647 chr3R + chr3R_227208_227322 chr3R_227207_227208;chr3R_227322_227323 chr3R_227076_227207;chr3R_227323_227739 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Rga,Spec2 chr3R - chr3R_1434742_1435371 chr3R_1434742_1435353 chr3R_1434172_1434741;chr3R_1435372_1435603 68.89 60.29 65.31 78.05 78.12 60.47 68.89 80.00 76.54 54.76 54.05 70.13 79.31 64.71 58.33 69.57 73.08 69.05 68.57 67.06 78.79 64.55 68.75 66.67 56.41 78.95 65.62 78.57 71.43 72.97 74.47 76.19 58.59 74.14 73.21 69.84 62.20 67.16 70.93 43.36 70.89 67.42 58.14 63.83 65.75 69.86 62.26 64.18 73.68 75.64 73.44 70.97 69.57 66.22 71.70 64.00 67.44 61.64 K intron_retention CG8176,I_chr3R_5348614_5348964 chr3R + chr3R_5351476_5351530 chr3R_5351475_5351476;chr3R_5351530_5351531 chr3R_5350742_5351475;chr3R_5351531_5351866 0.00 0.00 0.00 0.71 2.70 0.00 0.83 1.33 1.92 0.00 0.00 0.00 1.09 0.00 2.27 0.00 0.00 0.00 3.48 0.99 0.00 2.50 0.75 0.00 0.00 0.00 8.08 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 1.27 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Myb,RI_chrX_15752571_15753225 chrX - chrX_15751579_15751749 chrX_15751578_15751579;chrX_15751749_15751750 chrX_15749823_15751578;chrX_15751750_15751876 96.30 97.06 97.50 97.47 93.94 96.77 97.62 96.23 96.00 84.21 97.44 95.00 97.92 97.87 97.78 96.91 98.21 97.56 98.55 95.65 96.77 97.22 97.87 92.86 95.00 94.74 97.22 90.91 96.97 96.88 96.43 95.00 96.30 98.08 95.45 96.00 91.43 94.12 95.65 90.54 95.24 96.30 97.92 93.48 100.00 96.67 94.44 92.00 94.39 100.00 96.55 93.10 96.00 100.00 96.15 100.00 96.15 95.52 K alternative_donor CG13551,I_chr2R_19265701_19270570 chr2R - chr2R_19270283_19270611 chr2R_19270283_19270570 chr2R_19270138_19270282;chr2R_19270612_19270645 100.00 100.00 99.15 100.00 100.00 99.09 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.64 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.71 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG10365,I_chr3R_19549381_19554106,I_chr3R_19554176_19554388 chr3R + chr3R_19549425_19554388;chr3R_19549381_19554388 chr3R_19549452_19554388 chr3R_19554389_19554488;chr3R_19549281_19549380 3.13 0.00 4.00 3.23 0.00 0.00 3.03 4.35 4.65 0.00 6.25 3.85 13.33 0.00 11.11 9.38 5.26 5.88 0.00 7.50 0.00 NA 0.00 0.00 0.00 3.85 4.55 NA 0.00 0.00 0.00 0.00 3.33 7.41 6.25 NA 0.00 8.70 3.57 4.44 3.33 6.25 0.00 0.00 0.00 2.63 0.00 3.85 6.98 0.00 3.57 0.00 NA 0.00 7.14 0.00 NA 0.00 K jcn_only_AA CG5741,I_chr3L_8928033_8928095 chr3L - chr3L_8928033_8928095 chr3L_8928039_8928095 chr3L_8928096_8928195;chr3L_8927933_8928032 97.22 100.00 97.22 96.77 96.67 100.00 98.46 96.05 100.00 100.00 NA 95.12 93.75 97.14 100.00 100.00 96.43 94.74 97.78 100.00 100.00 94.83 92.11 97.44 100.00 91.89 100.00 95.24 97.22 97.56 91.67 NA 98.28 100.00 100.00 100.00 92.00 NA 100.00 100.00 100.00 94.81 92.31 91.67 97.67 94.74 100.00 92.86 97.10 NA 100.00 NA NA NA 93.88 NA 96.67 93.62 K alternative_acceptor Pfrx,I_chrX_19390217_19400515,RI_chrX_19390217_19403850,RI_chrX_19392914_19400518,RI_chrX_19399882_19400518,I_chrX_19400112_19400515,RI_chrX_19400112_19400518,I_chrX_19400271_19400518 chrX + chrX_19392914_19400518 chrX_19392914_19400515 chrX_19392814_19392913;chrX_19400519_19400615 61.54 NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA 75.00 NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 41.67 NA 60.00 NA NA 90.00 NA 31.25 NA NA NA NA 61.54 NA 70.00 NA NA NA NA NA NA NA K intron_retention p120ctn,I_chr2R_482968_494268,I_chr2R_487593_493262 chr2R + chr2R_487426_487488 chr2R_487425_487426;chr2R_487488_487489 chr2R_486774_487425;chr2R_487489_487592 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG6171,I_chr3R_11188806_11188873,CG34404,CG14868 chr3R - chr3R_11188820_11188873 chr3R_11188819_11188820;chr3R_11188873_11188874 chr3R_11188514_11188819;chr3R_11188874_11188973 54.72 52.17 55.88 80.56 58.82 46.15 68.18 55.81 59.15 61.54 66.67 48.28 50.00 54.17 52.78 48.84 66.67 42.31 55.17 50.57 64.00 58.82 62.86 62.16 77.42 76.47 71.83 58.46 60.47 56.41 57.50 50.00 53.33 46.81 37.50 60.78 55.36 48.08 50.00 54.72 72.09 61.40 42.86 43.14 51.61 45.76 49.12 40.91 56.14 50.00 47.54 57.50 43.18 52.31 47.50 54.55 53.62 57.14 K alternative_acceptor CG32062,I_chr3L_10573430_10580726,F_chr3L_10582617_10583219 chr3L + chr3L_10582617_10583426 chr3L_10582617_10583219 chr3L_10582565_10582616;chr3L_10583427_10583490 0.00 0.00 NA NA NA NA NA NA 6.67 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 5.88 0.00 6.67 0.00 0.00 NA NA NA NA NA NA 0.00 NA 5.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA K intron_retention CG11927,CG11926 chr2L + chr2L_4847848_4847963 chr2L_4847847_4847848;chr2L_4847963_4847964 chr2L_4847785_4847847;chr2L_4847964_4849499 96.15 92.86 93.33 89.74 100.00 100.00 95.65 88.24 97.44 100.00 95.45 95.24 100.00 94.12 100.00 95.24 95.00 100.00 100.00 96.15 92.31 100.00 91.30 95.24 100.00 100.00 100.00 100.00 100.00 95.83 94.44 93.33 96.30 90.62 100.00 92.86 93.10 100.00 100.00 95.83 100.00 97.22 88.89 100.00 94.44 95.65 100.00 100.00 96.55 83.33 95.00 100.00 87.50 100.00 95.65 94.12 96.55 100.00 K intron_retention rho-7,noncoding_6143 chr2R - chr2R_7874732_7874785 chr2R_7874731_7874732;chr2R_7874785_7874786 chr2R_7874532_7874731;chr2R_7874786_7875003 5.56 5.56 0.00 23.33 6.12 5.00 7.14 10.00 7.25 2.70 8.11 8.57 0.00 7.41 0.00 0.00 0.00 3.85 0.00 5.19 6.25 5.66 6.06 3.57 5.26 5.71 9.80 3.39 7.55 8.57 9.38 6.56 6.90 10.42 8.33 5.26 4.67 5.88 9.23 2.68 3.39 10.00 0.00 0.00 7.92 6.80 4.62 3.12 14.04 1.64 7.84 0.00 3.45 3.45 4.17 2.90 6.45 5.36 K jcn_only_AD I_chr3R_261173_261244,CG14650,RI_chr3R_265878_265942 chr3R + chr3R_265874_265942 chr3R_265878_265942 chr3R_265943_266042;chr3R_265778_265873 1.43 2.46 1.09 0.78 2.41 0.00 3.70 1.77 4.65 1.09 0.00 1.83 1.61 1.33 2.17 1.09 0.00 1.22 1.18 0.60 0.00 1.09 2.00 0.00 1.25 0.00 0.78 2.60 5.00 2.27 7.69 2.74 0.00 0.91 1.43 2.99 3.70 1.05 1.23 0.77 0.00 0.74 2.74 1.79 2.26 0.95 0.87 1.55 1.68 5.97 2.56 3.75 3.70 2.08 4.76 3.23 0.75 0.00 K alternative_donor pgant3,I_chr2R_2947729_2947783 chr2R - chr2R_2947729_2947787 chr2R_2947729_2947783 chr2R_2947629_2947728;chr2R_2947788_2947883 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette Eph,I_chr4_631523_634240,I_chr4_632065_634240,I_chr4_632433_632707,I_chr4_632433_632988,I_chr4_639690_640473,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_632065_634240 chr4_632065_632138;chr4_632282_632352;chr4_632433_634240 chr4_632139_632281;chr4_632353_632432 chr4_631965_632064;chr4_634241_634340 100.00 100.00 96.00 95.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.36 100.00 96.77 100.00 98.31 100.00 100.00 97.44 98.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 83.33 85.71 97.92 100.00 94.12 100.00 93.75 94.12 100.00 100.00 97.92 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA Ranbp21,I_chrX_19545347_19545435,CG14223 chrX - chrX_19545347_19545435 chrX_19545351_19545435 chrX_19545436_19545535;chrX_19545247_19545346 98.81 100.00 97.73 100.00 100.00 100.00 100.00 97.83 94.78 98.84 100.00 97.67 NA 97.44 100.00 94.59 100.00 97.73 100.00 97.78 100.00 98.97 98.67 97.53 98.59 97.30 98.82 98.09 98.31 100.00 100.00 97.85 99.26 98.61 100.00 100.00 97.40 100.00 99.09 98.10 99.12 98.99 100.00 98.28 98.89 98.17 98.18 98.81 97.18 100.00 98.75 97.22 100.00 95.12 100.00 98.31 100.00 95.86 K alternative_donor Wwox,I_chr2L_8000434_8000497,Spn28D chr2L - chr2L_8000434_8003283 chr2L_8000434_8000497 chr2L_8000366_8000433;chr2L_8003284_8003463 15.38 13.04 18.18 26.32 12.50 17.65 27.27 26.47 24.32 20.00 36.36 21.05 40.00 26.32 20.00 23.08 33.33 27.27 26.32 17.65 21.43 7.14 11.76 13.04 8.70 13.04 20.00 16.67 9.52 6.25 16.67 9.09 4.35 31.03 14.29 13.04 25.00 10.53 8.11 13.79 7.69 24.24 30.77 19.05 7.41 12.50 10.71 8.70 23.08 11.76 11.54 15.38 3.12 7.41 26.32 11.11 6.67 3.23 K alternative_donor sec63,RI_chr3L_7354705_7354843 chr3L + chr3L_7354132_7354843 chr3L_7354705_7354843 chr3L_7354844_7354943;chr3L_7353532_7354131 1.08 1.03 0.00 1.09 1.47 1.23 0.87 0.68 1.18 1.11 0.00 0.62 1.20 0.00 1.11 1.43 1.04 1.23 0.91 1.08 1.39 2.59 0.74 0.88 1.59 0.00 0.81 3.45 1.38 1.19 2.80 1.05 1.26 0.69 0.00 0.00 2.94 1.37 2.02 1.15 0.68 1.04 1.54 1.09 1.46 0.44 0.00 0.38 1.18 0.86 1.08 1.14 0.00 0.00 0.98 1.32 0.75 0.28 K intron_retention tai,I_chr2L_9191814_9206231 chr2L + chr2L_9191814_9233987 chr2L_9191813_9191814;chr2L_9233987_9233988 chr2L_9191714_9191813;chr2L_9233988_9234657 0.00 0.00 0.00 1.54 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 2.97 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 1.68 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette kis,RI_chr2L_218886_227371,RI_chr2L_231035_231947,RI_chr2L_242745_242800,I_chr2L_242926_250756 chr2L - chr2L_218886_227371 chr2L_218886_226115;chr2L_226509_227371 chr2L_226116_226508 chr2L_218786_218885;chr2L_227372_227471 98.92 98.31 98.21 95.29 97.83 96.15 100.00 98.82 100.00 98.65 100.00 99.30 100.00 100.00 100.00 98.33 100.00 97.96 97.67 99.34 100.00 89.78 99.37 98.96 98.73 100.00 96.77 98.90 96.20 98.57 98.04 97.30 99.27 98.97 98.84 100.00 99.40 98.53 99.28 100.00 100.00 97.30 97.56 98.78 100.00 97.92 98.08 99.22 98.36 100.00 98.92 100.00 100.00 100.00 96.43 97.50 100.00 100.00 K intron_retention c12_2 chrX + chrX_9213718_9214117 chrX_9213717_9213718;chrX_9214117_9214118 chrX_9213525_9213717;chrX_9214118_9214545 15.74 14.29 NA NA 25.00 NA 16.67 NA 13.64 NA NA 13.04 NA NA 13.33 NA NA NA NA 7.41 NA 88.89 12.50 25.00 22.22 NA 20.83 20.00 22.73 10.00 18.75 NA 5.26 18.75 NA 0.00 19.51 NA 11.76 19.05 NA 17.86 NA 10.53 NA NA NA 6.67 14.81 25.00 24.00 25.00 NA 6.67 NA 12.50 6.67 NA K intron_retention FKBP59,CG4537 chr2L + chr2L_9889571_9889631 chr2L_9889570_9889571;chr2L_9889631_9889632 chr2L_9889460_9889570;chr2L_9889632_9889769 0.00 0.00 0.00 0.35 0.00 0.00 0.38 0.64 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.48 0.89 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5991 chr3R + chr3R_19877478_19877559 chr3R_19877477_19877478;chr3R_19877559_19877560 chr3R_19877426_19877477;chr3R_19877560_19879314 97.92 97.06 95.45 100.00 100.00 97.22 98.48 98.72 98.78 100.00 95.83 98.70 97.78 100.00 98.33 97.37 97.06 96.97 98.21 97.80 100.00 94.74 93.48 97.44 95.45 97.62 100.00 100.00 100.00 100.00 98.36 100.00 97.92 98.82 96.77 100.00 100.00 96.30 100.00 98.25 100.00 97.75 97.06 97.22 95.83 93.88 97.22 96.77 98.94 100.00 97.62 96.67 100.00 96.30 96.55 100.00 100.00 97.83 K jcn_only_AD sax,CG1882 chr2R + chr2R_3700498_3700785;chr2R_3700238_3700785 chr2R_3700197_3700785 chr2R_3700786_3702250;chr2R_3700011_3700196 14.29 13.24 11.11 14.08 6.45 26.53 11.38 12.31 17.17 12.07 5.71 11.22 17.07 13.04 18.84 21.31 11.11 24.39 21.74 18.25 11.54 23.27 11.63 15.91 17.24 12.50 18.98 8.40 13.01 10.53 26.83 14.58 11.00 5.63 15.79 11.58 12.84 16.30 18.58 12.77 17.48 19.05 11.76 12.04 22.06 21.00 8.25 18.33 20.21 15.66 16.50 17.46 10.81 14.29 12.73 12.68 18.31 16.00 K intron_retention norpA,I_chrX_4217835_4219380,I_chrX_4219265_4219380 chrX + chrX_4219265_4219380 chrX_4219264_4219265;chrX_4219380_4219381 chrX_4219252_4219264;chrX_4219381_4219480 60.00 NA NA NA NA NA NA 63.64 44.44 NA NA NA NA NA NA NA NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA 69.23 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG1021,I_chr3R_2217711_2231099,I_chr3R_2217711_2231390,RI_chr3R_2217711_2231463,I_chr3R_2217742_2218601,I_chr3R_2217742_2219453,I_chr3R_2218465_2231390,RI_chr3R_2218465_2231463,I_chr3R_2218682_2231463,I_chr3R_2219634_2231390,I_chr3R_2231383_2231463 chr3R - chr3R_2217742_2218601;chr3R_2217711_2218601 chr3R_2218465_2218601 chr3R_2218602_2218681;chr3R_2217642_2217710 26.09 22.22 23.53 45.45 27.27 23.08 47.06 34.62 38.46 25.00 11.11 34.21 44.44 40.00 20.69 37.50 40.00 21.05 35.00 20.83 13.64 38.46 18.42 17.07 20.00 28.57 34.78 28.57 36.84 29.41 33.33 12.50 14.81 32.56 30.00 18.18 21.21 11.54 11.90 27.08 23.08 33.33 29.41 28.12 27.78 30.77 17.86 28.57 35.29 23.40 16.13 15.79 8.11 13.33 26.09 23.53 13.46 24.00 K cassette bol,RI_chr3L_9117011_9118271 chr3L - chr3L_9106588_9118266;chr3L_9106588_9118271 chr3L_9106588_9116715;chr3L_9116877_9118271,chr3L_9116877_9118266 chr3L_9116716_9116876 chr3L_9106512_9106587;chr3L_9118272_9118272 95.45 NA 80.00 NA NA NA 100.00 85.71 90.91 NA NA 100.00 NA 100.00 NA 100.00 NA NA 85.71 66.67 NA NA NA NA NA NA NA NA NA NA 75.00 NA NA 100.00 NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA K jcn_only_AA CG2064 chr2R + chr2R_3553522_3553627;chr2R_3553522_3553650 chr2R_3553522_3553619 chr2R_3553444_3553521;chr2R_3553651_3553914 0.42 0.46 0.42 0.48 0.00 0.47 0.55 0.27 0.32 0.00 0.00 0.44 0.64 0.55 0.00 0.29 0.80 0.00 0.00 0.20 0.65 0.00 0.45 1.13 0.43 0.37 0.57 0.69 0.58 0.00 0.90 0.00 1.46 0.28 0.43 0.35 0.00 0.42 0.00 0.65 1.69 0.49 0.00 1.11 1.35 0.29 0.00 0.57 0.00 0.32 0.00 1.12 0.00 0.84 0.00 0.00 0.23 0.81 K intron_retention LanB1 chr2L + chr2L_7814401_7814575 chr2L_7814400_7814401;chr2L_7814575_7814576 chr2L_7814363_7814400;chr2L_7814576_7814643 0.00 0.00 0.00 5.63 2.60 0.00 3.42 0.52 1.00 0.00 2.08 0.75 1.40 3.54 2.82 1.52 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 6.82 5.88 11.11 11.11 2.86 0.00 NA 0.00 3.27 0.00 0.00 0.00 0.00 NA 4.08 10.53 1.06 0.00 0.00 NA 0.00 0.00 0.00 2.12 0.00 5.56 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention eIF4G,I_chr4_948813_950447 chr4 - chr4_950743_951137 chr4_950742_950743;chr4_951137_951138 chr4_950706_950742;chr4_951138_951213 0.00 NA NA NA NA NA 4.44 0.00 0.00 NA NA 6.25 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Psa,I_chr3L_1518053_1518213 chr3L + chr3L_1517756_1518176 chr3L_1517755_1517756;chr3L_1518176_1518177 chr3L_1517586_1517755;chr3L_1518177_1518796 12.14 NA NA 15.38 NA NA 14.29 10.00 9.09 NA NA 29.41 NA NA NA 4.35 NA NA 14.29 5.88 NA NA NA NA NA NA NA NA NA NA 16.67 NA 0.00 22.22 NA NA NA NA NA NA NA 16.67 NA NA NA NA NA 5.00 8.70 NA NA NA NA NA NA NA NA NA K intron_retention CG1172 chr3R + chr3R_1219825_1219952 chr3R_1219824_1219825;chr3R_1219952_1219953 chr3R_1219638_1219824;chr3R_1219953_1220115 0.00 0.00 0.00 1.96 0.00 0.00 6.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.17 0.00 0.00 3.92 3.39 11.11 2.13 0.00 0.00 0.00 0.00 1.72 14.49 0.00 0.00 0.00 1.77 6.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention TBPH,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19747141_19747212 chr2R_19747140_19747141;chr2R_19747212_19747213 chr2R_19746699_19747140;chr2R_19747213_19747350 0.00 0.00 0.00 0.00 0.00 0.00 20.93 3.92 3.77 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 6.67 0.00 0.00 8.33 5.56 9.68 0.00 23.08 0.00 0.00 5.26 0.00 0.00 0.00 12.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 2.56 5.26 0.00 3.12 2.56 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette ctp,I_chrX_4582382_4585669,I_chrX_4582627_4585669,RI_chrX_4582706_4585629,RI_chrX_4582706_4592329 chrX + chrX_4582706_4592329 chrX_4582706_4585669;chrX_4585878_4592329 chrX_4585670_4585877 chrX_4582606_4582705;chrX_4592330_4592419 100.00 100.00 100.00 99.56 100.00 100.00 99.75 99.79 99.84 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.86 100.00 100.00 100.00 100.00 100.00 99.57 100.00 99.35 100.00 99.60 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.80 100.00 100.00 100.00 99.67 100.00 99.76 100.00 100.00 99.81 100.00 100.00 99.51 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA RpL11,I_chr2R_15330246_15330292,I_chr2R_15330603_15330817 chr2R + chr2R_15330246_15330305;chr2R_15330246_15330292 chr2R_15330246_15330317 chr2R_15330177_15330245;chr2R_15330318_15330383 0.00 0.00 0.01 0.00 0.02 0.00 0.00 0.01 0.00 0.05 0.00 0.00 0.00 0.00 0.01 0.00 0.02 0.00 0.02 0.01 0.03 0.00 0.02 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.00 0.00 0.01 0.00 K alternative_acceptor ATPsyn-beta chr4 + chr4_1052580_1053532 chr4_1052580_1053514 chr4_1052474_1052579;chr4_1053533_1053844 0.22 0.15 0.23 0.27 0.28 0.16 0.17 0.22 0.15 0.00 0.27 0.16 0.14 0.16 0.22 0.44 0.41 0.21 0.49 0.26 0.26 0.87 0.29 0.30 0.00 0.26 0.22 0.31 0.00 0.28 0.14 0.00 0.18 0.09 0.63 0.00 0.13 0.00 0.25 0.16 0.87 0.20 0.17 0.31 0.22 0.00 0.40 0.28 0.21 0.50 0.30 0.20 0.51 0.31 0.11 0.19 0.16 0.00 K cassette Dap160,I_chr2L_21139943_21140007 chr2L - chr2L_21138031_21138711 chr2L_21138031_21138112;chr2L_21138359_21138711 chr2L_21138113_21138358 chr2L_21137757_21138030;chr2L_21138712_21139602 84.81 92.00 84.62 55.36 85.19 90.32 80.00 76.00 84.81 84.78 83.33 93.65 87.10 81.82 80.95 97.06 84.85 74.36 88.24 82.22 80.00 85.88 82.05 92.21 84.09 80.00 84.75 97.73 80.70 83.33 74.42 82.35 85.90 91.67 93.48 63.16 87.63 92.00 87.36 94.51 85.42 88.31 96.15 88.71 87.50 85.71 86.54 86.15 83.10 78.95 81.93 84.62 83.33 86.54 80.43 79.66 87.88 74.12 K alternative_donor Mnf,RI_chr3L_11108913_11109028 chr3L - chr3L_11111166_11113709;chr3L_11111166_11113381 chr3L_11111166_11112264 chr3L_11110405_11111165;chr3L_11113710_11113829 3.85 0.00 3.23 4.17 6.25 5.26 2.38 3.70 6.98 0.00 4.55 3.51 3.33 3.85 2.94 3.45 4.76 5.56 3.12 4.76 4.76 3.45 4.00 4.00 4.00 4.55 4.35 11.11 11.11 7.69 3.57 0.00 7.69 1.96 0.00 3.23 6.67 0.00 3.70 3.23 7.14 4.44 2.94 0.00 5.88 5.26 0.00 4.35 3.33 3.85 3.23 10.00 0.00 6.25 3.33 4.35 0.00 3.85 K intron_retention sdt,E_chrX_8118081_8119115,C_chrX_8118081_8119117,I_chrX_8131684_8131842 chrX + chrX_8118081_8121903 chrX_8118080_8118081;chrX_8121903_8121904 chrX_8117989_8118080;chrX_8121904_8122131 0.00 0.00 7.69 NA 5.88 5.00 NA 6.67 5.41 0.00 0.00 2.70 NA NA 0.00 NA 0.00 0.00 NA 3.57 NA 0.00 0.00 2.56 8.00 18.75 7.14 NA 7.41 0.00 NA 0.00 0.00 11.76 0.00 6.45 0.00 0.00 8.51 1.69 NA 5.26 NA 0.00 0.00 0.00 0.00 6.52 6.45 0.00 0.00 9.09 NA 0.00 0.00 0.00 NA NA K intron_retention Kr-h2 chr2L + chr2L_6073174_6073236 chr2L_6073173_6073174;chr2L_6073236_6073237 chr2L_6073040_6073173;chr2L_6073237_6073712 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 1.02 1.15 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Cnx99A,I_chr3R_25144335_25145173,I_chr3R_25145243_25145309,I_chr3R_25145256_25145426 chr3R - chr3R_25145216_25145286 chr3R_25145215_25145216;chr3R_25145286_25145287 chr3R_25145174_25145215;chr3R_25145287_25145319 98.01 99.20 94.35 99.06 97.92 96.58 100.00 97.97 98.01 96.20 99.10 99.60 97.56 96.97 99.33 97.35 99.21 98.26 97.33 97.43 96.43 94.59 99.41 100.00 99.00 97.62 100.00 95.35 97.85 96.46 95.93 92.50 97.56 95.14 99.13 99.12 99.34 98.84 99.19 98.75 98.59 96.59 96.30 97.39 92.39 97.96 99.37 93.40 98.29 100.00 99.45 98.41 97.25 100.00 99.35 99.18 100.00 94.06 K alternative_acceptor HmgD,I_chr2R_17601672_17603325,I_chr2R_17603119_17603196 chr2R + chr2R_17603123_17603250 chr2R_17603123_17603196 chr2R_17602911_17603122;chr2R_17603251_17603296 100.00 100.00 100.00 99.69 100.00 100.00 100.00 100.00 100.00 99.64 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.77 100.00 99.82 99.87 99.76 99.72 100.00 100.00 100.00 100.00 99.88 100.00 99.83 100.00 100.00 99.86 99.84 100.00 100.00 99.81 100.00 100.00 100.00 100.00 100.00 100.00 99.79 100.00 100.00 K alternative_acceptor CG3532 chr3R + chr3R_7840163_7840234 chr3R_7840163_7840225 chr3R_7840045_7840162;chr3R_7840235_7840251 100.00 93.75 100.00 100.00 87.50 100.00 94.74 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 NA 100.00 92.86 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 90.91 100.00 100.00 100.00 95.24 90.00 92.31 100.00 100.00 100.00 100.00 92.86 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 K alternative_donor Rap2l,I_chr2R_19951753_19952256,RI_chr2R_19952181_19952256 chr2R + chr2R_19952181_19952256;chr2R_19951753_19952256 chr2R_19951097_19952256 chr2R_19952257_19952356;chr2R_19950576_19951096 92.16 94.23 94.23 94.74 92.86 96.00 90.54 93.75 92.86 89.29 90.91 93.75 91.30 94.12 94.23 89.47 93.48 90.48 92.59 90.54 91.89 91.03 91.89 91.18 91.18 92.73 90.70 76.32 89.19 88.64 90.91 92.86 88.10 93.02 90.24 90.91 85.00 93.88 93.55 91.14 92.73 93.40 94.74 92.54 92.16 95.12 90.74 91.80 91.67 90.14 88.46 90.48 93.18 93.02 93.75 92.65 93.94 92.54 K jcn_only_AA Dp,I_chr2R_9111166_9112971,REI_chr2R_9113257_9113316 chr2R + chr2R_9113257_9113316 chr2R_9113257_9113313 chr2R_9113201_9113256;chr2R_9113317_9113416 94.00 95.18 97.85 94.12 92.00 90.91 89.19 93.84 92.66 92.06 94.23 94.12 89.04 90.28 95.24 96.84 95.24 98.15 85.45 96.10 90.62 92.71 94.87 94.74 97.40 98.28 93.81 95.00 89.83 95.24 100.00 98.41 96.77 92.42 98.44 96.55 90.83 92.96 93.22 96.04 97.56 95.11 94.00 95.41 92.08 93.55 93.98 91.30 92.90 94.74 90.57 91.67 93.06 95.89 92.73 91.14 84.72 97.54 K jcn_only_AA Eip71CD chr3L + chr3L_15505837_15505905 chr3L_15505837_15505895 chr3L_15505771_15505836;chr3L_15505906_15505963 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N alternative_donor Tor chr2L + chr2L_13005998_13006352 chr2L_13006226_13006352 chr2L_13006353_13006363;chr2L_13005431_13005997 31.66 NA 16.67 53.85 NA 33.33 21.43 27.78 25.00 NA 50.00 23.53 NA 33.33 18.75 23.53 NA 18.18 NA 50.00 NA 50.00 NA NA 33.33 20.00 60.00 66.67 50.00 NA 21.43 NA 22.22 29.41 30.00 30.00 57.14 NA 25.00 35.71 NA 23.08 NA NA 37.50 NA NA 41.67 43.75 NA 30.00 20.00 50.00 NA 27.27 50.00 50.00 44.44 K intron_retention mthl10 chr3L - chr3L_334120_334237 chr3L_334119_334120;chr3L_334237_334238 chr3L_334067_334119;chr3L_334238_334276 100.00 94.12 92.86 100.00 100.00 100.00 100.00 96.00 96.67 NA 100.00 100.00 95.24 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 88.89 100.00 NA 88.89 100.00 NA 100.00 93.33 NA 93.33 100.00 100.00 96.77 100.00 92.86 100.00 100.00 88.89 91.67 96.77 83.33 90.91 100.00 NA 88.89 93.75 100.00 92.86 NA K alternative_acceptor wb chr2L + chr2L_14325555_14326434 chr2L_14325555_14325695 chr2L_14324897_14325554;chr2L_14326435_14327053 40.84 50.00 NA 52.94 NA 16.67 66.67 50.00 37.50 NA NA 41.67 75.00 33.33 33.33 50.00 25.00 75.00 75.00 30.77 NA 33.33 14.29 23.08 NA NA 25.00 100.00 NA 40.00 20.00 66.67 50.00 50.00 33.33 33.33 20.00 20.00 12.50 46.15 NA 50.00 50.00 42.86 66.67 42.86 50.00 75.00 45.45 35.71 16.67 75.00 33.33 27.27 33.33 40.00 30.00 50.00 K cassette unc-13,CRE_chr4_904268_906381,I_chr4_904268_919018,I_chr4_904747_906385,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_904268_906385 chr4_904268_906079;chr4_906089_906385 chr4_906080_906088 chr4_904196_904267;chr4_906386_906481 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Hsc70Cb chr3L + chr3L_14030513_14030577;chr3L_14030522_14030577 chr3L_14030503_14030577 chr3L_14030578_14030850;chr3L_14030355_14030502 12.50 NA NA 0.00 NA NA 11.54 22.22 18.75 NA NA 12.50 NA NA NA NA NA NA 12.50 8.33 NA NA NA NA NA NA NA NA 20.00 NA 11.11 NA NA 10.00 NA NA NA NA NA 16.67 NA 37.50 NA NA NA NA NA NA 0.00 NA NA NA NA NA 28.57 NA NA NA K intron_retention CG1399,I_chr2R_3574133_3574191 chr2R - chr2R_3575799_3585614 chr2R_3575798_3575799;chr2R_3585614_3585615 chr2R_3575701_3575798;chr2R_3585615_3586370 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 4.55 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.64 0.00 0.00 NA 0.00 0.00 11.11 3.92 5.56 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention CG2118,I_chr3R_27619193_27619598 chr3R - chr3R_27618078_27618149 chr3R_27618077_27618078;chr3R_27618149_27618150 chr3R_27617866_27618077;chr3R_27618150_27618368 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 95.00 100.00 100.00 K multi_cassette CG40263,F_chr2RHet_1265687_1293040,F_chr2RHet_1298459_1298703,F_chr2RHet_1298459_1311408,F_chr2RHet_1298885_1299622,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1265687_1324445 chr2RHet_1265687_1286307;chr2RHet_1286572_1292103;chr2RHet_1292187_1293055;chr2RHet_1293175_1293235;chr2RHet_1293394_1324445 chr2RHet_1286308_1286571;chr2RHet_1292104_1292186;chr2RHet_1293056_1293174;chr2RHet_1293236_1293393 chr2RHet_1265587_1265686;chr2RHet_1324446_1324530 51.31 52.63 52.63 46.15 60.00 47.62 40.00 49.25 54.55 50.00 NA 48.72 55.56 61.11 61.11 48.57 71.43 60.00 50.00 87.50 40.00 33.33 53.33 47.37 25.00 42.86 71.43 20.00 22.22 75.00 72.00 50.00 37.50 56.41 40.00 22.22 66.67 55.56 53.85 65.00 8.70 59.46 61.11 56.25 20.00 40.00 52.94 80.00 54.29 18.18 68.42 55.56 30.00 50.00 75.00 43.75 33.33 13.79 K alternative_acceptor CG18624,RI_chrX_7787450_7787620,RI_chrX_7787450_7787687,RI_chrX_7787524_7787687 chrX - chrX_7787450_7787782 chrX_7787524_7787782 chrX_7787783_7787787;chrX_7787424_7787449 99.13 99.21 97.58 99.09 99.18 99.32 97.14 95.26 96.74 100.00 98.10 97.08 95.65 97.35 99.37 97.63 99.08 98.41 98.40 96.17 99.20 100.00 99.15 100.00 100.00 99.13 99.20 98.63 99.11 100.00 98.92 99.43 100.00 97.89 100.00 100.00 99.50 99.07 100.00 99.53 100.00 98.90 98.17 100.00 97.84 100.00 99.19 100.00 98.46 98.97 98.82 100.00 99.15 99.08 97.60 100.00 99.58 98.80 K intron_retention yellow-f2,CG17327,E_chr3R_8823050_8823182 chr3R - chr3R_8823047_8823161 chr3R_8823046_8823047;chr3R_8823161_8823162 chr3R_8822950_8823046;chr3R_8823162_8823177 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.84 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG2818 chr2L + chr2L_3713737_3714091 chr2L_3713736_3713737;chr2L_3714091_3714092 chr2L_3713380_3713736;chr2L_3714092_3714491 0.00 NA NA 5.56 NA NA 4.00 0.00 0.00 NA NA 0.00 NA 7.14 0.00 0.00 0.00 NA 0.00 3.85 NA 0.00 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA 3.23 NA NA NA NA 0.00 0.00 NA 3.45 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 NA K alternative_donor vib,RI_chr3R_15051793_15051920,RI_chr3R_15051793_15052186 chr3R - chr3R_15051793_15052186;chr3R_15051793_15052202 chr3R_15051793_15051920 chr3R_15051737_15051792;chr3R_15052203_15052286 5.32 7.27 4.69 4.84 9.26 4.76 10.75 7.25 6.40 14.71 2.67 4.83 7.25 7.23 5.34 4.49 7.02 3.95 3.88 4.96 4.44 11.43 6.38 4.93 9.52 6.09 5.19 8.93 11.27 4.90 2.75 5.00 10.17 7.33 7.22 6.33 4.21 5.81 4.85 4.19 6.78 5.32 5.88 6.12 3.37 6.34 4.35 8.70 4.25 3.39 4.76 5.13 3.36 3.77 6.30 3.48 3.17 5.68 K cassette Mical,I_chr3R_5828974_5830131,noncoding_15780,I_chr3R_5829878_5830377,I_chr3R_5834577_5835458,I_chr3R_5843939_5844218,I_chr3R_5847106_5863537,I_chr3R_5863483_5863537,I_chr3R_5863613_5868513 chr3R - chr3R_5829373_5830377 chr3R_5829373_5830131;chr3R_5830165_5830377 chr3R_5830132_5830164 chr3R_5829096_5829372;chr3R_5830378_5830477 0.00 0.00 NA NA 5.88 NA 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA 3.45 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 NA 0.00 0.00 2.56 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 K alternative_donor lqfR,I_chr3R_18243588_18243830 chr3R + chr3R_18239002_18239082 chr3R_18239006_18239082 chr3R_18239083_18239179;chr3R_18238632_18239001 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.88 0.00 2.00 0.00 1.49 1.54 1.15 0.00 2.56 0.00 0.80 0.00 0.00 0.00 0.00 1.61 0.00 0.72 1.33 0.00 0.00 0.00 1.33 0.00 1.59 0.83 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Thiolase chr2R - chr2R_19755518_19755575 chr2R_19755517_19755518;chr2R_19755575_19755576 chr2R_19755343_19755517;chr2R_19755576_19755735 2.46 2.30 0.92 7.26 1.83 0.00 6.29 2.16 1.06 3.39 4.94 1.27 0.00 0.99 3.25 0.75 0.00 3.51 3.81 2.83 1.05 6.02 3.72 0.82 11.88 7.23 2.93 2.15 6.72 4.21 13.83 1.83 4.83 2.66 4.63 14.00 2.55 0.94 2.50 2.71 13.25 1.74 2.44 2.42 1.94 2.59 2.32 6.96 1.93 1.84 2.13 1.53 2.53 1.68 2.46 0.00 2.38 3.25 N intron_retention CG32529 chrX + chrX_19795687_19795900 chrX_19795686_19795687;chrX_19795900_19795901 chrX_19795901_19798251 15.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K mutually_exclusive Cda5 chr2L - chr2L_29069_33844,chr2L_34284_34557 chr2L_29069_30393,chr2L_33271_34557 chr2L_33845_34283 chr2L_30394_33270 chr2L_29024_29068;chr2L_34558_34596 0.00 NA 0.00 NA NA NA NA 0.00 0.00 NA NA 100.00 NA NA NA 0.00 NA 0.00 NA 0.00 NA 0.00 NA 0.00 NA 25.00 NA NA 0.00 NA 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 K intron_retention CG1407,RI_chr2R_5918919_5919093,I_chr2R_5918925_5919213,RI_chr2R_5918952_5919084,RI_chr2R_5918952_5919093 chr2R - chr2R_5918952_5919093 chr2R_5918951_5918952;chr2R_5919093_5919094 chr2R_5918927_5918951;chr2R_5919094_5919184 7.27 7.84 8.70 5.56 0.00 0.00 11.84 5.83 8.09 5.13 4.92 9.92 8.20 11.36 10.34 3.80 7.55 3.33 7.89 3.28 5.26 1.47 7.27 6.90 7.41 2.99 16.90 16.67 9.52 6.45 8.70 12.50 8.70 3.88 14.71 2.86 10.13 10.53 6.15 6.82 21.05 6.87 4.35 9.09 6.90 0.00 11.54 0.00 6.45 10.34 9.80 10.91 8.00 12.12 1.25 2.38 4.23 4.76 K alternative_donor Mpcp chr3L + chr3L_14530803_14531103;chr3L_14530935_14531103 chr3L_14530949_14531103 chr3L_14531104_14531521;chr3L_14530797_14530802 0.00 0.29 0.00 0.33 0.00 0.00 0.74 0.00 0.20 0.00 0.00 0.00 0.29 0.00 0.16 0.00 0.21 0.20 0.43 0.21 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.33 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.74 0.00 0.00 0.00 0.62 N cassette Aats-his,EI_chrX_18409716_18414750 chrX + chrX_18409716_18412857 chrX_18409716_18411843;chrX_18412060_18412857 chrX_18411844_18412059 chrX_18409616_18409715;chrX_18412858_18413286 100.00 100.00 100.00 91.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.19 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD akirin,I_chr3L_7363173_7364806,I_chr3L_7363177_7364806,I_chr3L_7363177_7364831,I_chr3L_7363211_7364831,I_chr3L_7363731_7364806,I_chr3L_7364126_7364806,RI_chr3L_7364737_7364806 chr3L + chr3L_7363169_7364806 chr3L_7363285_7364806 chr3L_7364807_7364906;chr3L_7363111_7363168 73.03 70.09 78.41 69.07 70.25 80.56 72.16 66.17 72.00 73.03 72.73 64.41 68.50 73.11 73.55 65.48 69.91 75.57 80.73 59.30 82.21 82.47 69.49 72.89 76.16 72.27 68.11 62.07 78.14 70.49 75.11 79.73 78.20 74.04 72.02 78.38 72.13 73.89 75.58 73.19 86.49 72.57 75.25 73.73 80.31 81.01 71.05 88.89 69.78 68.60 70.00 66.11 78.76 62.26 78.31 72.63 74.47 87.77 K alternative_acceptor I_chr3L_20775431_20775486,CG11396 chr3L - chr3L_20780810_20780890 chr3L_20780814_20780890 chr3L_20780891_20781177;chr3L_20780229_20780809 83.73 NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA NA 75.00 NA NA 72.73 NA NA NA 90.00 NA 77.78 90.00 NA NA 78.57 NA NA 66.67 66.67 100.00 NA NA 72.73 NA NA NA NA NA NA 91.67 NA NA 90.00 NA NA NA NA NA NA 91.67 K jcn_only_AD CG14939,RI_chr2L_11812683_11813150 chr2L - chr2L_11812683_11813724;chr2L_11812683_11813150 chr2L_11812683_11813633 chr2L_11812583_11812682;chr2L_11813725_11813792 2.88 11.43 3.17 1.00 2.56 4.76 2.86 5.88 1.85 NA 0.00 2.91 2.33 0.00 1.67 0.00 0.00 0.00 4.84 3.17 0.00 14.29 NA NA NA 1.96 NA NA 16.67 NA 1.59 6.45 0.00 4.46 NA NA 7.14 9.09 12.00 4.55 NA 0.94 0.00 15.00 0.00 NA NA 9.68 0.98 NA NA 3.70 NA NA 3.39 NA 0.00 3.70 K intron_retention CG11790,CG11791 chr3R + chr3R_20876091_20876902 chr3R_20876090_20876091;chr3R_20876902_20876903 chr3R_20876022_20876090;chr3R_20876903_20877278 88.24 79.07 82.61 92.75 89.47 78.05 92.54 88.46 89.42 81.82 90.48 91.25 79.59 86.00 91.67 97.01 86.05 88.24 87.27 94.66 89.74 84.62 87.72 86.54 96.55 97.44 95.45 89.29 97.30 90.48 90.16 90.91 86.05 87.64 96.55 87.88 86.79 89.19 84.91 86.52 82.50 86.21 87.10 89.06 92.86 84.44 73.33 94.29 90.62 93.88 85.71 88.89 76.92 78.57 89.06 84.09 78.26 78.57 K intron_retention CG3192 chrX - chrX_6571609_6571684 chrX_6571608_6571609;chrX_6571684_6571685 chrX_6571283_6571608;chrX_6571685_6571914 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 K alternative_acceptor tra2,psnoRNA:tra2-a,REFI_chr2R_10491644_10491701 chr2R - chr2R_10490382_10490665 chr2R_10490411_10490665 chr2R_10490666_10490794;chr2R_10490009_10490381 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention AIF chr2L + chr2L_2152271_2152662 chr2L_2152270_2152271;chr2L_2152662_2152663 chr2L_2152233_2152270;chr2L_2152663_2152944 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 7.32 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 9.09 5.56 0.00 0.00 0.00 0.00 0.00 0.00 5.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.12 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pros35,I_chr2L_10222136_10222201,I_chr2L_10222136_10222259,CG4908 chr2L + chr2L_10222144_10222201 chr2L_10222143_10222144;chr2L_10222201_10222202 chr2L_10222075_10222143;chr2L_10222202_10222270 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.34 0.00 0.00 0.00 0.00 0.28 1.35 0.00 0.00 0.37 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.37 0.00 0.00 0.32 0.17 0.79 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 K intron_retention bcn92,E_chrX_2042753_2043276,wapl,Cyp4d1 chrX - chrX_2042877_2043253 chrX_2042876_2042877;chrX_2043253_2043254 chrX_2042480_2042876;chrX_2043254_2043374 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.71 0.00 4.17 0.00 0.00 0.00 0.00 1.68 0.00 4.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD CG12703 chrX + chrX_19645171_19650462 chrX_19645580_19650462 chrX_19650463_19650575;chrX_19644833_19645170 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA Cf2,I_chr2L_4882802_4882864 chr2L - chr2L_4882802_4882864;chr2L_4882366_4882864 chr2L_4882493_4882864 chr2L_4882865_4882964;chr2L_4881215_4882365 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA 72.41 NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG12703 chrX + chrX_19645198_19645380;chrX_19645200_19645380;chrX_19645202_19645380;chrX_19645171_19645380;chrX_19644924_19645380 chrX_19645123_19645380 chrX_19645381_19645579;chrX_19644833_19644923 0.76 0.00 1.46 3.49 2.06 0.00 2.48 0.00 0.76 1.43 1.67 1.29 0.00 3.06 0.00 0.60 1.89 1.90 0.00 0.82 0.00 0.89 2.27 0.98 1.52 3.61 2.59 0.00 1.39 0.66 1.67 0.00 0.00 0.00 0.85 0.87 0.00 2.15 0.00 0.76 1.54 0.00 1.96 0.00 0.74 0.00 0.00 0.47 0.45 1.20 0.00 0.00 0.00 1.52 0.00 0.00 0.98 0.00 K alternative_donor CG31782,VhaSFD,RI_chr2L_16731891_16731942 chr2L - chr2L_16724002_16724068 chr2L_16724002_16724057 chr2L_16723138_16724001;chr2L_16724069_16724171 100.00 100.00 93.75 94.44 100.00 100.00 84.21 100.00 100.00 NA 100.00 90.00 88.89 100.00 100.00 100.00 NA 100.00 100.00 91.18 NA 92.31 100.00 NA NA 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 NA 88.89 93.33 100.00 88.46 87.50 87.50 94.12 100.00 100.00 91.67 94.12 87.50 NA NA NA NA 91.67 100.00 100.00 93.75 K alternative_donor CG11486,I_chr3L_3082041_3082115,RE_chr3L_3084894_3085203 chr3L + chr3L_3078045_3083732 chr3L_3078188_3083732 chr3L_3083733_3083809;chr3L_3077929_3078044 83.33 NA NA NA NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K multi_cassette CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2439831_2459590 chr3L_2439831_2442435;chr3L_2442961_2443389;chr3L_2443839_2443987;chr3L_2444088_2444498;chr3L_2446102_2459590 chr3L_2442436_2442960;chr3L_2443390_2443838;chr3L_2443988_2444087;chr3L_2444499_2446101 chr3L_2439731_2439830;chr3L_2459591_2459690 100.00 95.83 94.44 97.06 100.00 100.00 100.00 100.00 97.62 96.30 100.00 97.14 100.00 100.00 100.00 100.00 100.00 93.75 93.75 97.37 100.00 96.43 100.00 97.56 100.00 100.00 97.56 100.00 98.08 97.56 100.00 95.45 98.25 100.00 96.43 100.00 98.44 96.97 100.00 98.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 96.88 97.30 100.00 94.74 100.00 94.44 94.74 95.45 100.00 100.00 K alternative_acceptor CG11337,I_chr3R_27230306_27230374,RI_chr3R_27230320_27230374 chr3R - chr3R_27230320_27230374;chr3R_27230327_27230374 chr3R_27230306_27230374 chr3R_27230375_27230410;chr3R_27230220_27230305 62.77 NA NA 58.33 NA NA 58.33 66.67 61.90 NA NA 70.00 NA NA NA 66.67 NA NA 55.56 81.82 NA NA NA NA NA NA NA NA NA NA NA NA NA 58.33 NA NA 60.00 NA NA 50.00 NA 66.67 NA NA NA NA NA NA 63.64 NA NA NA NA NA 81.82 NA NA NA K alternative_donor skd chr3L - chr3L_21018649_21020285;chr3L_21018649_21019229;chr3L_21018649_21020239 chr3L_21018649_21020395 chr3L_21018052_21018648;chr3L_21020396_21020501 60.39 NA NA 37.50 NA NA 54.55 66.67 63.64 NA NA 87.50 77.78 57.14 NA 70.59 NA NA NA 66.67 NA 75.00 50.00 NA NA NA 50.00 NA 20.00 50.00 NA NA 57.14 83.33 NA 80.00 NA NA NA 40.00 NA 75.00 83.33 25.00 NA NA NA 57.14 80.00 NA NA NA NA NA 33.33 NA NA NA K intron_retention CG7843,I_chr2R_1972736_1972822 chr2R - chr2R_1971513_1972012 chr2R_1971512_1971513;chr2R_1972012_1972013 chr2R_1971446_1971512;chr2R_1972013_1972292 2.56 0.00 4.26 3.12 4.88 2.38 1.33 5.10 2.88 0.00 0.00 0.00 7.27 0.00 1.82 2.74 1.92 4.65 3.51 1.20 0.00 0.00 5.08 1.92 0.00 2.44 6.12 0.00 3.33 3.12 5.26 0.00 0.00 5.88 4.26 0.00 0.00 9.09 8.51 2.94 0.00 3.74 10.26 5.13 0.00 2.27 0.00 0.00 4.44 3.92 3.64 0.00 0.00 6.67 3.23 2.56 1.61 4.17 K intron_retention Shawn_Tyler,CG14215 chrX + chrX_19547296_19547354 chrX_19547295_19547296;chrX_19547354_19547355 chrX_19546660_19547295;chrX_19547355_19547671 0.00 NA 0.00 0.00 NA NA 0.00 4.76 0.00 25.00 NA 0.00 NA NA NA NA NA 0.00 NA 5.88 NA NA 0.00 0.00 NA NA 8.00 0.00 NA 11.76 NA NA 12.50 0.00 NA 8.70 6.67 5.26 0.00 15.15 NA 0.00 NA 3.85 NA NA NA NA 0.00 NA 3.85 NA NA 0.00 0.00 NA NA NA N alternative_donor RpL5,I_chr2L_22427822_22428348,I_chr2L_22428750_22428846 chr2L - chr2L_22427796_22428348 chr2L_22427796_22428143 chr2L_22427722_22427795;chr2L_22428349_22428391 0.04 0.02 0.04 0.05 0.04 0.04 0.07 0.04 0.06 0.04 0.03 0.05 0.04 0.05 0.06 0.06 0.05 0.02 0.04 0.04 0.04 0.03 0.03 0.04 0.03 0.03 0.06 0.23 0.03 0.02 0.03 0.01 0.01 0.05 0.04 0.02 0.02 0.03 0.05 0.03 0.03 0.05 0.05 0.03 0.00 0.03 0.03 0.03 0.10 0.04 0.04 0.03 0.03 0.02 0.05 0.03 0.02 0.02 K intron_retention CG9346 chr2R + chr2R_16899608_16899666 chr2R_16899607_16899608;chr2R_16899666_16899667 chr2R_16899519_16899607;chr2R_16899667_16899783 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor Gs1l,I_chr2L_4456517_4456723,I_chr2L_4458058_4458120 chr2L - chr2L_4456517_4456725 chr2L_4456521_4456725 chr2L_4456726_4456801;chr2L_4456417_4456516 100.00 NA NA 100.00 NA NA NA NA 92.31 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA 87.50 NA NA 100.00 NA NA NA 87.50 100.00 88.89 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 88.89 NA 100.00 K intron_retention Atpalpha,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16794209_16798894 chr3R_16794208_16794209;chr3R_16798894_16798895 chr3R_16794114_16794208;chr3R_16798895_16798994 83.33 87.50 80.00 92.86 NA NA 92.31 92.31 95.00 NA 84.62 85.71 61.11 87.50 77.78 NA NA 83.33 90.00 94.12 NA 69.23 81.82 70.00 NA 85.71 75.00 62.50 NA NA 100.00 NA NA 82.35 NA NA NA NA NA 78.95 NA 92.86 NA 75.00 NA NA NA NA 73.33 NA NA NA NA NA 76.92 NA NA NA K intron_retention CG3632,RI_chrX_16195880_16196242 chrX + chrX_16193505_16193572 chrX_16193504_16193505;chrX_16193572_16193573 chrX_16193309_16193504;chrX_16193573_16193758 0.00 0.00 0.00 0.00 0.00 0.00 4.88 5.08 6.35 NA 0.00 1.89 0.00 8.00 12.00 0.00 0.00 0.00 0.00 2.99 0.00 2.94 1.47 0.00 3.23 0.00 4.17 12.50 0.00 0.00 0.00 NA 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.67 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 K mutually_exclusive ens,I_chr3L_4130719_4131120 chr3L - chr3L_4127163_4129650,chr3L_4129792_4131120;chr3L_4127163_4130388,chr3L_4130644_4131120 chr3L_4127163_4128307,chr3L_4128974_4131120 chr3L_4129651_4129791;chr3L_4130389_4130643 chr3L_4128308_4128973 chr3L_4126989_4127162;chr3L_4131121_4131220 1.23 0.97 1.11 0.72 1.23 1.08 1.03 0.76 0.55 2.74 1.18 0.67 1.37 1.22 1.08 1.64 1.14 1.67 1.23 0.63 1.37 0.65 1.27 1.63 1.01 1.10 1.64 3.12 2.97 0.87 0.88 3.23 1.50 0.68 1.96 1.59 0.56 1.57 2.08 0.52 6.02 1.02 2.74 1.46 3.26 2.30 2.47 1.37 0.70 1.79 0.65 1.05 2.94 1.82 0.98 1.20 2.17 2.63 K intron_retention capt,I_chr2L_1156009_1158078,I_chr2L_1153732_1157370,I_chr2L_1163632_1163759 chr2L - chr2L_1152116_1152176 chr2L_1152115_1152116;chr2L_1152176_1152177 chr2L_1152095_1152115;chr2L_1152177_1152194 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor pcs,F_chr2R_10877121_10877189 chr2R + chr2R_10868885_10877057 chr2R_10869329_10877057 chr2R_10877058_10877120;chr2R_10868782_10868884 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG11790,CG11791 chr3R + chr3R_20875669_20876354;chr3R_20875669_20876902 chr3R_20875669_20876344 chr3R_20875600_20875668;chr3R_20876903_20877278 39.06 35.29 43.33 39.06 35.48 42.86 28.85 29.82 56.25 22.22 46.15 29.82 35.14 44.83 44.74 58.82 48.39 35.14 41.86 44.62 48.00 43.48 26.92 37.84 45.83 44.12 44.44 38.46 37.14 39.39 46.34 50.00 55.00 44.83 41.94 18.75 34.15 36.00 39.39 35.44 46.94 28.57 32.00 48.15 22.22 36.21 47.62 16.98 67.80 18.00 37.21 26.92 34.38 45.16 40.43 33.33 31.25 12.68 K alternative_donor CG7177 chr3L - chr3L_21547281_21547480;chr3L_21547281_21547653 chr3L_21547281_21547665 chr3L_21547125_21547280;chr3L_21547666_21547994 7.14 NA 11.11 0.00 14.29 10.00 4.55 5.00 4.35 10.00 18.18 4.35 8.33 10.00 14.29 9.38 11.11 11.11 10.00 8.00 0.00 6.25 0.00 10.00 0.00 0.00 10.00 9.09 5.26 11.11 8.33 NA 5.00 0.00 0.00 0.00 7.14 0.00 0.00 6.25 NA 5.00 0.00 11.11 NA 0.00 16.67 5.26 10.00 NA 0.00 NA NA NA 14.29 NA NA 14.29 K alternative_acceptor Prp8,I_chr2R_8048796_8048851,I_chr2R_8050245_8050389 chr2R - chr2R_8048572_8048851 chr2R_8048796_8048851 chr2R_8048852_8048951;chr2R_8048472_8048571 0.00 0.00 0.00 0.00 0.00 0.00 1.65 0.66 1.05 0.00 0.00 0.68 1.98 1.12 0.00 0.67 0.00 0.00 1.94 1.69 1.52 0.00 0.00 0.00 0.00 1.32 0.00 0.00 1.47 0.00 2.78 0.00 1.33 0.70 0.00 0.00 0.00 0.00 1.64 2.05 0.00 1.35 0.00 0.78 0.00 0.00 0.00 0.00 1.44 0.00 0.00 0.00 0.00 0.00 1.06 3.12 2.86 1.61 K intron_retention Actn,I_chrX_1922061_1924247,I_chrX_1922784_1923873 chrX - chrX_1923960_1924247 chrX_1923959_1923960;chrX_1924247_1924248 chrX_1923905_1923959;chrX_1924248_1924347 11.76 NA NA 0.00 NA NA 18.18 NA 11.76 NA NA 23.08 NA NA NA 22.22 NA NA NA 13.04 NA 0.00 5.56 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 11.11 NA 15.00 NA 11.76 NA 0.00 NA NA 27.78 NA 13.33 NA NA NA NA NA NA NA K jcn_only_AD CG6597,noncoding_13714 chr3L + chr3L_20295938_20296166;chr3L_20295972_20296166 chr3L_20295603_20296166 chr3L_20296167_20296215;chr3L_20295573_20295602 94.34 NA NA 94.87 95.00 NA 94.74 92.86 92.98 NA NA 93.75 95.00 NA 96.77 96.97 100.00 NA 100.00 93.33 85.71 83.33 85.00 100.00 NA 95.00 NA NA NA NA 88.89 NA 95.24 88.89 NA NA 84.85 NA NA 91.67 NA 93.94 100.00 90.00 88.00 NA NA 95.24 87.50 NA NA NA NA NA 95.65 NA NA 97.56 K alternative_acceptor Upf2,I_chrX_7969268_7969358,I_chrX_7969312_7969358 chrX - chrX_7969312_7969358;chrX_7969268_7969358;chrX_7969293_7969358 chrX_7969303_7969358 chrX_7969359_7969458;chrX_7969212_7969267 42.86 25.00 50.00 28.57 60.00 44.44 46.67 16.67 60.00 33.33 NA 50.00 41.67 50.00 18.18 30.77 12.50 42.86 25.00 41.67 16.67 53.85 23.08 33.33 42.86 54.55 NA 33.33 57.14 33.33 54.55 NA 28.57 52.38 40.00 50.00 50.00 40.00 37.50 46.15 NA 55.00 50.00 44.44 50.00 NA NA 66.67 50.00 25.00 33.33 NA 80.00 NA 46.15 NA 20.00 25.00 K intron_retention CG9947,eIF-2alpha chrX - chrX_16333796_16333859 chrX_16333795_16333796;chrX_16333859_16333860 chrX_16333630_16333795;chrX_16333860_16334195 0.00 0.00 0.88 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.36 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 K alternative_donor alpha-Cat,I_chr3L_23319053_23319787,I_chr3L_23319057_23319748,I_chr3L_23319861_23321813,I_chr3L_23327841_23328002 chr3L - chr3L_23319057_23319787 chr3L_23319057_23319748 chr3L_23318989_23319056;chr3L_23319788_23319848 0.00 0.00 0.00 0.00 0.00 1.92 1.50 0.00 1.15 0.00 0.00 0.00 0.00 0.00 1.41 0.65 1.32 0.00 1.09 0.65 2.33 0.00 0.00 0.00 2.13 1.69 2.11 0.00 5.88 0.00 0.00 2.38 0.00 0.67 0.00 2.00 0.00 0.00 0.00 1.27 1.96 0.00 0.00 1.09 0.00 0.00 1.10 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG8445,I_chr2R_12083437_12083571,I_chr2R_12083437_12083760,I_chr2R_12083476_12083760 chr2R - chr2R_12083437_12083571 chr2R_12083506_12083571 chr2R_12083572_12083671;chr2R_12083376_12083436 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA 96.15 NA NA NA 100.00 NA NA 92.31 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 100.00 NA NA 100.00 NA NA 97.96 95.45 100.00 NA NA NA 100.00 NA NA NA K jcn_only_AA CG30492,C_chr2R_3522706_3523025,RI_chr2R_3536203_3536977,I_chr2R_3543397_3543455 chr2R + chr2R_3528123_3535801 chr2R_3528123_3528336 chr2R_3527622_3528122;chr2R_3535802_3535913 3.78 5.26 0.00 0.00 5.88 2.86 4.35 1.39 6.93 9.38 10.00 5.48 3.03 12.90 5.88 1.92 4.17 3.57 4.26 12.50 0.00 3.17 0.00 0.00 0.00 3.64 4.55 NA 0.00 3.70 7.69 9.09 16.00 5.77 11.54 NA 3.28 10.00 2.56 4.44 0.00 2.70 0.00 6.67 11.11 0.00 2.38 0.00 7.25 0.00 3.85 NA 12.50 0.00 7.46 0.00 2.70 4.88 K jcn_only_AD Lam chr2L + chr2L_5542656_5543324;chr2L_5543273_5543324;chr2L_5542661_5543324 chr2L_5542864_5543324 chr2L_5543325_5543794;chr2L_5542527_5542655 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.43 1.08 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.68 0.00 0.00 0.00 1.03 0.00 0.00 0.00 K alternative_donor Pgi,I_chr2R_4800674_4800937,I_chr2R_4800693_4800761 chr2R - chr2R_4800693_4800937 chr2R_4800693_4800761 chr2R_4800593_4800692;chr2R_4800938_4801037 1.75 1.37 0.00 1.64 0.00 1.59 3.33 1.94 2.91 3.08 0.00 2.08 1.67 1.72 1.05 1.23 0.00 0.00 1.20 1.89 1.39 5.33 3.19 6.02 4.17 3.45 3.70 5.56 3.95 1.59 1.10 2.08 4.04 0.00 1.92 2.90 1.54 2.44 3.77 2.94 3.03 1.30 1.89 1.80 1.19 1.32 0.00 3.23 0.93 1.12 2.61 3.08 0.00 3.12 1.37 1.75 0.00 0.00 K cassette mnd chr3L + chr3L_14981350_14982948 chr3L_14981350_14981433;chr3L_14981516_14982948 chr3L_14981434_14981515 chr3L_14981173_14981349;chr3L_14982949_14983167 1.75 1.64 2.27 0.95 0.00 2.90 0.98 1.68 1.69 2.15 1.37 1.25 1.23 1.45 0.89 1.16 1.35 5.19 2.30 2.38 1.30 2.38 0.85 2.13 1.56 2.50 1.12 5.56 2.17 4.76 1.56 1.85 1.09 0.82 1.67 2.94 3.03 2.78 2.50 3.19 0.00 2.86 1.27 3.28 1.96 1.89 3.03 3.03 3.61 1.59 2.40 3.12 1.37 1.47 2.75 1.52 0.00 1.75 K intron_retention vlc chr2R + chr2R_1591722_1591790 chr2R_1591721_1591722;chr2R_1591790_1591791 chr2R_1590976_1591721;chr2R_1591791_1591887 0.00 2.56 0.00 6.58 0.00 0.00 1.52 3.90 1.98 0.00 0.00 0.00 0.00 7.41 0.00 6.90 0.00 0.00 4.44 2.90 3.45 0.00 5.88 0.00 7.69 0.00 25.81 9.52 0.00 0.00 0.00 0.00 0.00 1.27 10.53 23.81 0.00 0.00 0.00 2.44 NA 6.67 0.00 2.56 0.00 0.00 0.00 NA 2.00 0.00 2.17 0.00 0.00 3.23 0.00 0.00 0.00 0.00 K intron_retention ps,I_chr3R_5243723_5265067,I_chr3R_5243723_5270765,noncoding_15575,I_chr3R_5245770_5265067,I_chr3R_5245770_5269732,I_chr3R_5269733_5270765 chr3R + chr3R_5254375_5257750 chr3R_5254374_5254375;chr3R_5257750_5257751 chr3R_5254353_5254374;chr3R_5257751_5258205 23.81 22.22 20.00 22.22 30.77 33.33 15.22 14.29 24.19 50.00 11.54 23.21 19.35 23.81 21.88 26.53 23.81 23.08 25.00 21.15 13.33 56.76 17.78 24.00 15.00 37.50 35.71 31.58 21.43 50.00 26.32 NA 44.44 27.27 25.00 13.33 21.21 23.81 19.23 25.00 NA 27.91 55.00 21.88 NA 36.36 NA 63.16 16.28 NA 17.65 25.00 NA NA 18.52 NA NA NA K cassette norpA,I_chrX_4219265_4219380 chrX + chrX_4247647_4251072 chrX_4247647_4247976;chrX_4248057_4251072 chrX_4247977_4248056 chrX_4247500_4247646;chrX_4251073_4251309 72.73 91.67 85.71 26.67 77.78 71.43 50.00 76.00 90.91 53.33 NA 77.27 54.55 78.57 85.71 80.00 69.23 80.00 72.73 93.55 NA 66.67 74.07 64.29 72.73 90.00 55.56 NA 53.85 80.00 80.00 NA 59.09 90.91 71.43 7.14 80.00 66.67 78.57 56.25 NA 80.77 75.00 61.11 71.43 NA 50.00 66.67 75.86 50.00 64.00 80.00 NA NA 87.50 66.67 75.00 63.64 K alternative_donor ph-d chrX - chrX_2015658_2017014 chrX_2015658_2015729 chrX_2015184_2015657;chrX_2017015_2017061 6.67 7.69 0.00 3.85 7.69 6.67 8.33 3.70 6.67 0.00 9.09 7.69 10.00 5.56 7.69 5.56 9.09 11.11 4.76 8.33 0.00 6.67 5.88 8.33 11.11 0.00 9.09 25.00 10.00 5.26 7.69 NA 5.56 8.70 NA 0.00 0.00 NA 6.67 7.69 NA 4.35 0.00 5.88 NA 0.00 9.09 2.78 8.33 12.50 6.25 NA NA NA 8.33 10.00 NA 6.67 K cassette fry,I_chr3L_9636648_9656042 chr3L - chr3L_9627025_9627786 chr3L_9627025_9627503;chr3L_9627534_9627786 chr3L_9627504_9627533 chr3L_9626065_9627024;chr3L_9627787_9628413 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 2.56 NA NA NA NA NA NA 7.69 0.00 NA 5.00 2.63 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 2.38 0.00 3.57 3.45 2.56 0.00 2.70 NA 0.00 0.00 NA NA 0.00 0.00 K intron_retention fwd,RI_chr3L_319514_319746 chr3L - chr3L_314318_319746 chr3L_314317_314318;chr3L_319746_319747 chr3L_313024_314317;chr3L_319747_319846 38.46 27.78 58.82 42.86 NA 43.75 48.15 44.12 26.47 23.53 NA 42.42 35.29 29.41 28.57 25.00 29.41 31.25 29.17 34.21 31.25 42.86 34.15 43.75 43.75 69.23 42.86 38.46 35.71 23.08 30.00 NA 15.38 29.41 27.27 60.00 41.67 39.13 55.56 38.71 NA 35.48 50.00 33.33 NA NA NA 43.75 39.13 NA 29.17 41.18 NA NA 39.29 NA NA 38.46 K intron_retention chrb,I_chr3L_11481702_11483304 chr3L + chr3L_11481375_11481435 chr3L_11481374_11481375;chr3L_11481435_11481436 chr3L_11480660_11481374;chr3L_11481436_11481701 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 96.30 91.67 92.31 100.00 NA 100.00 95.45 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 K alternative_acceptor CG12582 chr3R + chr3R_23594_23980;chr3R_23594_23942 chr3R_23594_23930 chr3R_23459_23593;chr3R_23981_24494 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor vib,RI_chr3R_15051793_15051920,RI_chr3R_15051793_15052186 chr3R - chr3R_15051793_15051920;chr3R_15051793_15052186 chr3R_15051793_15052202 chr3R_15051737_15051792;chr3R_15052203_15052286 92.98 91.82 93.75 94.35 90.74 95.24 87.10 90.58 93.02 85.29 96.00 92.75 89.86 91.57 93.13 93.59 92.98 96.05 94.17 92.98 94.44 85.71 92.20 91.55 85.71 93.04 92.86 87.50 85.92 94.12 96.33 93.75 89.83 91.33 91.75 89.87 92.63 93.02 92.23 94.61 89.83 94.68 94.12 91.84 93.26 92.96 94.20 89.13 93.87 94.07 93.45 94.87 94.12 95.28 92.13 94.78 95.24 92.05 K intron_retention CG33969,I_chr3L_20390576_20390678 chr3L - chr3L_20386326_20386378 chr3L_20386325_20386326;chr3L_20386378_20386379 chr3L_20386251_20386325;chr3L_20386379_20386446 1.72 0.00 5.26 17.24 6.45 0.00 1.61 7.41 4.35 0.00 0.00 9.52 14.29 0.00 0.00 14.71 4.17 0.00 0.00 4.84 0.00 20.00 9.09 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 6.67 7.41 5.26 0.00 0.00 6.67 0.00 11.43 1.72 4.26 4.08 0.00 0.00 2.78 3.92 7.69 7.55 0.00 0.00 2.44 3.45 0.00 0.00 2.94 0.00 0.00 5.00 K intron_retention CG11009,I_chr3L_12844823_12845526,I_chr3L_12845441_12845526 chr3L + chr3L_12844254_12844408 chr3L_12844253_12844254;chr3L_12844408_12844409 chr3L_12844015_12844253;chr3L_12844409_12844822 2.14 2.90 0.00 0.68 0.00 0.00 4.88 2.04 1.81 1.89 0.00 3.57 0.00 5.26 4.21 5.26 0.00 1.59 3.28 2.66 0.00 4.43 1.65 2.45 2.48 9.09 0.00 2.15 4.08 3.28 3.80 0.00 2.60 1.64 2.27 2.74 1.07 2.40 2.14 4.35 3.85 1.79 0.00 2.82 1.52 3.27 1.17 3.48 3.31 1.81 2.00 0.00 2.70 0.59 2.33 1.15 0.97 0.78 K intron_retention larp,I_chr3R_24150390_24150531,F_chr3R_24151542_24153876,RI_chr3R_24160430_24161527 chr3R - chr3R_24151542_24159430 chr3R_24151541_24151542;chr3R_24159430_24159431 chr3R_24151442_24151541;chr3R_24159431_24160429 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor RpS25,I_chr3R_7041333_7041414,I_chr3R_7041347_7041413,I_chr3R_7041347_7041556,RI_chr3R_7044164_7044221 chr3R - chr3R_7041347_7041414;chr3R_7041347_7041471 chr3R_7041347_7041556 chr3R_7041267_7041346;chr3R_7041557_7041598 0.10 0.11 0.17 0.18 0.09 0.08 0.07 0.14 0.10 0.10 0.10 0.16 0.09 0.15 0.07 0.17 0.10 0.04 0.11 0.13 0.07 1.91 0.10 0.08 0.03 0.22 0.07 0.22 0.12 0.10 0.08 0.07 0.12 0.11 0.11 0.07 0.07 0.08 0.09 0.17 0.06 0.13 0.10 0.04 0.05 0.06 0.13 0.04 0.12 0.31 0.08 0.03 0.04 0.07 0.12 0.07 0.02 0.06 K intron_retention CG2685,CG2701,RI_chrX_2612780_2612845,ttm50 chrX - chrX_2607655_2607710 chrX_2607654_2607655;chrX_2607710_2607711 chrX_2607529_2607654;chrX_2607711_2607858 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA 11.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 K intron_retention Eaat1 chr2L + chr2L_9338756_9338817 chr2L_9338755_9338756;chr2L_9338817_9338818 chr2L_9338588_9338755;chr2L_9338818_9338845 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA 4.76 NA NA NA NA NA NA NA 8.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA K intron_retention CG33298 chr2L + chr2L_9515745_9515811 chr2L_9515744_9515745;chr2L_9515811_9515812 chr2L_9515565_9515744;chr2L_9515812_9515936 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 7.14 NA 0.00 2.38 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 1.85 NA NA 0.00 K alternative_acceptor Aats-val chr2R + chr2R_9086425_9086478 chr2R_9086425_9086465 chr2R_9086375_9086424;chr2R_9086479_9086689 36.18 25.00 36.36 29.17 63.64 12.50 54.17 52.63 41.67 NA 40.00 42.86 44.44 23.53 32.00 29.41 38.46 60.00 33.33 44.83 28.57 26.67 36.36 36.36 NA 34.78 NA 36.36 61.54 NA 36.00 NA NA 42.86 NA NA 20.00 NA 30.00 NA NA 41.18 26.67 36.36 14.29 NA NA NA 35.48 NA NA 25.00 NA NA 26.09 NA NA NA K alternative_donor Ntf-2,I_chrX_20906749_20909772 chrX + chrX_20907492_20907565 chrX_20907498_20907565 chrX_20907566_20907664;chrX_20907429_20907491 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.55 100.00 100.00 99.34 98.91 100.00 99.08 100.00 98.88 100.00 100.00 100.00 100.00 100.00 99.27 100.00 100.00 99.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.15 100.00 99.24 100.00 100.00 100.00 100.00 100.00 99.37 100.00 98.97 99.46 100.00 99.21 100.00 98.73 100.00 100.00 99.38 100.00 99.12 K intron_retention Atg8a,I_chrX_10659836_10659921,RI_chrX_10659836_10660127,I_chrX_10659836_10660362,I_chrX_10659836_10660406,I_chrX_10659836_10661133,E_chrX_10659836_10661147,I_chrX_10659836_10661185,noncoding_22965 chrX - chrX_10659836_10660406 chrX_10659835_10659836;chrX_10660406_10660407 chrX_10659736_10659835;chrX_10660407_10660462 41.67 NA NA 36.36 NA NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 36.84 46.15 NA NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 42.86 35.71 NA NA NA NA NA NA NA K jcn_only_AA Mpk2,I_chr3R_19977468_19977530,F_chr3R_19985127_19985197 chr3R - chr3R_19977468_19977567 chr3R_19977492_19977567 chr3R_19977568_19977630;chr3R_19977368_19977467 7.69 4.00 NA 2.56 NA NA 3.45 11.11 2.27 NA 7.69 7.50 8.33 NA 7.14 7.84 11.54 0.00 NA 13.64 0.00 9.52 17.65 14.29 5.00 10.34 7.69 28.57 11.11 0.00 2.50 6.45 13.04 11.90 4.76 26.09 9.09 NA 3.12 9.26 19.44 8.33 NA 13.89 7.50 7.14 6.67 15.00 15.69 NA 7.50 0.00 0.00 NA 6.06 5.56 3.45 12.24 K intron_retention endos,I_chr3L_14024099_14024488,I_chr3L_14024103_14024158,I_chr3L_14024103_14024546,noncoding_12505,I_chr3L_14024496_14024546 chr3L - chr3L_14024103_14024546 chr3L_14024102_14024103;chr3L_14024546_14024547 chr3L_14024003_14024102;chr3L_14024547_14024588 93.88 92.00 94.55 98.81 92.68 97.73 91.67 98.65 93.46 90.24 95.92 98.88 91.67 95.65 98.36 94.44 94.87 97.92 96.72 93.75 97.50 85.37 84.29 87.91 95.24 100.00 98.21 90.91 95.12 92.11 100.00 93.88 64.58 92.86 95.56 97.83 91.38 87.50 90.74 90.12 97.56 92.39 92.68 97.96 92.45 92.19 94.34 91.67 95.51 87.14 96.67 100.00 95.65 90.16 98.25 92.98 92.11 89.33 K intron_retention CG3386,CG3344,CG32483,Vti1 chr3L - chr3L_686528_686580 chr3L_686527_686528;chr3L_686580_686581 chr3L_686342_686527;chr3L_686581_687367 100.00 100.00 100.00 NA NA NA 100.00 NA 100.00 NA 90.91 100.00 NA 100.00 NA 100.00 NA NA 100.00 95.24 NA 88.89 100.00 91.67 NA 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 NA 93.75 100.00 100.00 100.00 92.31 100.00 92.31 NA 100.00 100.00 100.00 90.00 100.00 100.00 90.00 100.00 NA NA NA NA NA 100.00 100.00 K intron_retention CG17665 chr2R - chr2R_123683_123741 chr2R_123682_123683;chr2R_123741_123742 chr2R_123500_123682;chr2R_123742_123841 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 7.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pgi,I_chr2R_4800674_4800937,I_chr2R_4800693_4800761 chr2R - chr2R_4800693_4800937 chr2R_4800692_4800693;chr2R_4800937_4800938 chr2R_4800593_4800692;chr2R_4800938_4801037 1.23 2.70 1.33 2.44 3.03 0.00 2.52 2.88 1.18 1.56 0.00 2.08 0.00 0.00 2.08 0.00 0.00 0.00 1.20 0.00 0.00 7.19 2.15 1.27 4.17 3.45 4.88 5.56 0.00 3.12 1.10 2.08 2.06 0.84 0.00 1.47 2.29 1.23 2.86 0.75 0.00 1.94 0.00 0.91 0.00 3.85 1.69 3.23 0.00 0.00 3.45 0.00 0.00 0.00 0.00 3.45 0.00 0.00 K cassette CtBP chr3R + chr3R_8847365_8851110 chr3R_8847365_8850545;chr3R_8850767_8851110 chr3R_8850546_8850766 chr3R_8847142_8847364;chr3R_8851111_8851987 37.14 41.03 36.84 15.38 26.09 31.25 32.00 37.50 33.33 30.00 58.33 37.74 22.73 27.27 30.00 33.33 50.00 26.32 35.71 38.30 42.86 42.25 41.07 41.54 37.14 35.00 28.57 36.36 33.33 38.24 31.82 33.33 41.67 31.03 41.67 48.48 36.76 44.68 37.78 45.45 26.09 28.81 28.57 45.00 45.45 35.29 46.51 50.00 37.50 44.44 51.11 30.43 42.31 48.48 26.32 44.83 35.42 41.67 K jcn_only_AA CG8490 chr2R + chr2R_8222882_8222945 chr2R_8222882_8222936 chr2R_8222813_8222881;chr2R_8222946_8223775 47.62 NA 50.00 51.56 41.38 NA 63.64 38.10 40.62 NA 47.83 48.48 NA NA 41.67 45.71 NA 36.36 33.33 43.14 47.62 NA NA NA NA 47.62 NA NA NA NA 50.00 NA NA 51.43 NA NA NA NA NA NA NA 38.89 NA NA NA NA NA NA 50.00 NA NA NA NA NA 52.17 NA NA NA K alternative_donor Cctgamma chr3R + chr3R_12473409_12473557;chr3R_12473318_12473557;chr3R_12473479_12473557;chr3R_12473424_12473557;chr3R_12473464_12473557 chr3R_12473420_12473557 chr3R_12473558_12473651;chr3R_12473311_12473317 92.31 92.86 88.00 94.59 91.30 92.86 88.89 86.96 90.48 100.00 100.00 90.91 94.44 88.00 85.19 96.77 91.67 100.00 100.00 85.71 95.24 100.00 100.00 96.15 85.71 84.21 96.30 90.48 69.23 100.00 88.89 86.67 84.62 86.11 100.00 84.62 96.55 95.45 95.24 86.67 70.00 86.84 90.48 100.00 92.31 83.33 100.00 91.67 95.00 91.67 100.00 100.00 92.31 92.86 90.00 100.00 96.55 84.21 K jcn_only_AD CG6006 chr3R + chr3R_11983962_11984579;chr3R_11984036_11984579;chr3R_11984029_11984579;chr3R_11984018_11984579 chr3R_11984096_11984579 chr3R_11984580_11984637;chr3R_11983945_11983961 4.67 NA NA NA NA NA 9.09 NA 19.23 NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA 3.23 NA 4.35 NA NA NA NA NA NA NA K alternative_acceptor bip2,RI_chr4_481674_487126,RI_chr4_483144_483680,RI_chr4_486609_487126 chr4 - chr4_481112_481199 chr4_481147_481199 chr4_481200_481282;chr4_481043_481111 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 93.33 100.00 100.00 96.15 100.00 K intron_retention CG1129 chr3R + chr3R_640496_641008 chr3R_640495_640496;chr3R_641008_641009 chr3R_639961_640495;chr3R_641009_641687 2.29 3.45 2.94 4.17 2.17 3.85 3.60 4.93 2.48 0.00 2.50 2.55 9.23 0.00 0.00 3.42 4.76 4.94 1.27 1.32 0.00 9.71 3.03 2.50 0.00 0.00 1.10 1.89 0.00 3.57 2.11 0.00 0.00 0.74 0.00 3.64 3.33 2.63 1.77 4.00 1.82 3.25 0.00 3.70 0.00 0.99 0.00 4.48 4.22 1.96 3.70 2.99 0.00 0.00 3.26 0.00 2.29 0.00 K intron_retention CG17019,I_chr2R_8821104_8821171 chr2R - chr2R_8819048_8819106 chr2R_8819047_8819048;chr2R_8819106_8819107 chr2R_8818420_8819047;chr2R_8819107_8819246 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.73 0.00 0.00 0.00 0.00 0.00 0.00 5.26 2.50 27.03 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 2.22 0.00 0.00 0.00 0.00 0.00 K intron_retention MRP,F_chr2L_12727117_12736035 chr2L + chr2L_12724344_12724471 chr2L_12724343_12724344;chr2L_12724471_12724472 chr2L_12724206_12724343;chr2L_12724472_12724618 95.24 100.00 100.00 96.55 100.00 92.31 93.94 96.55 100.00 NA 92.31 97.96 94.44 100.00 100.00 97.78 94.12 100.00 100.00 100.00 88.89 100.00 92.68 100.00 95.24 88.89 96.55 95.24 85.37 100.00 94.12 87.50 94.37 100.00 78.95 80.39 92.86 90.00 96.43 94.59 92.86 97.14 100.00 84.09 88.89 92.86 100.00 97.78 94.44 92.31 94.12 100.00 93.33 NA 100.00 90.91 94.74 100.00 K alternative_acceptor Psi,RI_chr2R_12752536_12752596,I_chr2R_12753387_12753659 chr2R - chr2R_12752536_12752596;chr2R_12752539_12752596 chr2R_12752542_12752596 chr2R_12752597_12752696;chr2R_12752436_12752535 25.00 36.36 33.33 30.00 44.44 18.18 18.18 33.33 19.05 33.33 33.33 26.92 14.29 22.22 21.43 27.27 33.33 28.57 25.00 21.05 25.00 29.41 33.33 20.00 NA 21.43 28.57 28.57 14.29 20.83 33.33 33.33 20.00 26.32 NA 21.43 25.00 25.00 36.36 23.91 25.00 24.14 20.00 21.05 12.50 28.57 28.57 28.57 28.57 30.00 18.18 25.00 12.50 25.00 22.22 18.18 20.00 26.32 K intron_retention CG12206,I_chrX_3367405_3367523 chrX - chrX_3360241_3360302 chrX_3360240_3360241;chrX_3360302_3360303 chrX_3359913_3360240;chrX_3360303_3360368 0.00 0.00 10.00 3.33 NA NA 7.69 4.76 12.50 NA NA 8.70 NA NA NA 0.00 NA NA NA 4.35 NA 1.75 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.29 0.00 0.00 NA 0.00 0.00 0.00 0.00 18.18 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 14.29 NA 0.00 0.00 K intron_retention RI_chrX_8468338_8469380,I_chrX_8468338_8477573,CG12065,I_chrX_8469524_8477579,CE_chrX_8469528_8477573 chrX + chrX_8468441_8469386 chrX_8468440_8468441;chrX_8469386_8469387 chrX_8468351_8468440;chrX_8469387_8469480 62.02 54.55 60.00 NA NA 61.54 36.67 55.56 50.00 41.67 NA 62.50 33.33 61.54 71.43 70.83 80.00 NA 69.23 76.47 63.64 55.00 50.00 61.11 83.33 77.78 73.91 60.00 73.33 41.67 63.16 NA 53.85 52.63 63.64 NA 60.00 NA NA 74.07 81.82 52.17 88.89 64.29 NA 72.73 NA 81.25 65.22 54.55 56.25 53.85 70.00 NA 60.00 63.64 36.36 62.50 K intron_retention CG18812,I_chr2R_3617214_3617883,I_chr2R_3617214_3622585,noncoding_4991 chr2R - chr2R_3617214_3622881 chr2R_3617213_3617214;chr2R_3622881_3622882 chr2R_3617147_3617213;chr2R_3622882_3623125 14.77 12.12 19.40 29.27 17.39 17.86 14.29 13.85 14.12 14.29 24.39 18.75 6.56 11.48 15.71 12.79 14.75 15.52 14.29 13.04 25.00 33.33 11.54 14.81 21.82 12.20 20.47 23.08 16.07 14.77 8.70 17.39 18.18 10.66 15.00 17.54 18.89 10.11 17.00 16.54 14.81 10.45 8.20 13.73 22.22 12.68 8.47 14.44 8.89 16.36 17.70 20.63 5.88 15.62 10.81 11.76 13.33 7.79 K jcn_only_AA vig2 chr3R + chr3R_20949838_20950311 chr3R_20949838_20950293 chr3R_20949354_20949837;chr3R_20950312_20950498 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.30 0.45 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.27 0.00 0.00 0.79 0.00 0.27 0.00 0.00 0.20 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.32 0.00 0.00 0.00 K intron_retention PH4alphaEFB,spdo,I_chr3R_26304468_26304840,I_chr3R_26305150_26309614 chr3R + chr3R_26292097_26299755 chr3R_26292096_26292097;chr3R_26299755_26299756 chr3R_26292028_26292096;chr3R_26299756_26299950 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 3.45 0.63 0.00 0.00 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA l(2)k05819,I_chr2L_4396173_4396266 chr2L + chr2L_4396173_4396809 chr2L_4396173_4396266 chr2L_4396143_4396172;chr2L_4396810_4396906 0.83 0.00 0.00 0.83 2.78 0.00 0.81 4.55 0.00 6.67 1.22 4.17 6.67 1.47 1.52 0.95 1.72 0.00 0.00 0.67 0.00 7.69 1.47 2.99 0.00 0.00 1.35 0.00 0.00 0.00 10.17 0.00 0.00 0.94 0.00 0.00 1.72 7.89 0.00 0.00 NA 0.82 0.00 0.00 0.00 3.33 0.00 0.00 0.90 2.86 1.89 4.00 NA NA 1.18 10.00 3.23 NA K intron_retention mld chr3R + chr3R_20445958_20446100 chr3R_20445957_20445958;chr3R_20446100_20446101 chr3R_20445895_20445957;chr3R_20446101_20446835 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA K alternative_donor sqh,I_chrX_6118043_6119039,I_chrX_6118150_6118725,I_chrX_6118150_6118729,I_chrX_6118150_6118790,I_chrX_6118150_6118800 chrX - chrX_6118150_6118729;chrX_6118150_6119035;chrX_6118150_6119039;chrX_6118150_6118949 chrX_6118150_6118725 chrX_6118050_6118149;chrX_6119040_6119139 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6845,I_chr3L_148414_148465,I_chr3L_148414_148475,I_chr3L_148414_148489 chr3L + chr3L_148414_148461 chr3L_148413_148414;chr3L_148461_148462 chr3L_148350_148413;chr3L_148462_148555 12.77 7.41 18.52 14.52 12.50 0.00 2.78 16.95 11.49 NA 8.00 12.07 9.68 11.76 21.88 22.22 6.25 13.79 14.58 8.82 5.56 6.45 22.22 24.00 20.00 3.03 42.86 NA 13.04 9.09 7.81 25.00 25.00 13.89 20.00 26.67 15.38 14.29 14.29 9.09 16.00 12.50 11.43 20.00 8.33 6.67 6.67 14.81 21.05 9.09 16.67 8.70 7.69 NA 7.41 17.86 16.00 12.50 K intron_retention CG9396,CG9399,I_chr3R_5403032_5403329 chr3R - chr3R_5397123_5397210 chr3R_5397122_5397123;chr3R_5397210_5397211 chr3R_5397076_5397122;chr3R_5397211_5397275 45.45 NA NA NA NA NA NA NA 60.00 NA NA 46.15 NA NA NA 26.67 NA NA NA 36.84 77.78 NA NA NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA 54.55 NA NA 45.45 NA NA NA NA NA NA 29.41 NA 45.45 NA NA NA NA NA 45.45 NA K intron_retention CG42271,RI_chrX_14127297_14127804 chrX - chrX_14123271_14123331 chrX_14123270_14123271;chrX_14123331_14123332 chrX_14122537_14123270;chrX_14123332_14124661 0.00 0.00 0.00 19.05 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 3.23 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K cassette CG4266,I_chr2R_17052549_17053657 chr2R - chr2R_17054548_17055100 chr2R_17054548_17054676;chr2R_17054950_17055100 chr2R_17054677_17054949 chr2R_17054404_17054547;chr2R_17055101_17055688 19.61 10.00 19.23 19.61 13.79 16.00 12.12 18.75 12.68 31.58 12.00 30.00 8.57 19.05 17.24 31.58 18.52 15.62 15.38 17.81 16.67 64.71 19.70 22.22 36.00 29.03 25.53 44.19 31.37 18.42 12.77 26.83 28.00 14.29 20.00 32.50 23.08 21.15 22.73 19.51 25.00 19.67 13.04 17.74 30.19 17.78 21.43 21.43 20.31 25.86 25.00 18.92 14.29 34.78 25.93 18.92 13.16 11.59 K intron_retention CG31159 chr3R + chr3R_18439619_18439682 chr3R_18439618_18439619;chr3R_18439682_18439683 chr3R_18439532_18439618;chr3R_18439683_18439845 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG33558,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,I_chr2R_2820149_2820628,EI_chr2R_2820947_2821570,CREI_chr2R_2832933_2850384 chr2R - chr2R_2817876_2818978 chr2R_2817875_2817876;chr2R_2818978_2818979 chr2R_2817851_2817875;chr2R_2818979_2819008 38.46 50.00 50.00 47.06 NA NA 80.00 76.92 39.39 NA NA 40.00 NA NA 31.25 76.92 53.33 NA 63.64 33.33 NA 63.16 25.00 28.00 NA NA 25.00 NA 47.06 77.27 50.00 27.78 38.89 50.00 36.36 25.81 16.67 20.00 29.17 42.55 37.50 38.46 36.36 42.86 26.92 31.82 23.81 42.11 38.89 23.08 23.53 NA 26.32 26.67 50.00 29.63 19.05 51.72 K jcn_only_AD CG1599,I_chr2R_5729744_5729805 chr2R - chr2R_5729673_5729805 chr2R_5729673_5729801 chr2R_5729644_5729672;chr2R_5729806_5729905 2.29 2.68 1.98 3.41 1.64 1.15 2.27 1.05 1.69 2.78 2.94 1.09 0.91 4.12 5.04 1.17 1.18 3.41 3.45 1.03 4.94 4.00 2.19 1.47 0.00 2.48 3.01 4.76 2.04 1.45 2.29 1.59 2.50 4.63 0.00 1.56 2.04 3.16 2.99 2.36 2.22 2.01 2.06 2.41 5.88 1.05 0.85 5.41 3.05 4.08 2.08 5.48 0.00 1.61 3.60 2.52 2.61 7.50 K intron_retention RpS15 chr2R - chr2R_12458354_12458421 chr2R_12458353_12458354;chr2R_12458421_12458422 chr2R_12458131_12458353;chr2R_12458422_12458510 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.02 0.00 0.22 0.07 0.00 0.00 0.00 0.03 0.07 0.00 0.00 0.02 0.00 0.03 0.00 0.04 0.00 0.00 0.09 0.07 0.98 0.00 0.08 0.00 0.12 0.00 0.06 0.00 0.04 0.00 0.04 0.04 0.00 0.00 0.00 0.00 0.06 0.00 0.05 0.00 0.13 0.00 0.03 0.00 0.02 0.00 0.04 0.04 0.02 0.00 K intron_retention CG2658 chrX - chrX_2590292_2590353 chrX_2590291_2590292;chrX_2590353_2590354 chrX_2590021_2590291;chrX_2590354_2590890 0.00 0.00 1.45 1.35 0.00 0.00 1.72 0.00 2.04 0.92 0.00 0.00 0.00 0.00 2.30 0.00 0.00 0.00 0.00 0.58 0.00 0.88 1.36 0.00 0.00 2.04 2.94 1.85 1.33 0.82 0.00 0.74 0.24 0.00 1.60 0.00 0.00 0.00 0.50 0.31 0.79 0.00 4.08 0.00 0.00 0.33 1.89 0.38 2.00 3.03 0.81 0.00 0.00 0.00 0.00 0.00 1.32 0.00 K alternative_acceptor jet chr2L - chr2L_4948560_4948897 chr2L_4948772_4948897 chr2L_4948898_4949817;chr2L_4948202_4948559 18.18 17.65 23.08 NA NA NA 46.15 18.18 21.05 23.08 NA 23.53 NA NA 9.09 NA NA 14.29 NA 15.00 NA 58.82 16.67 14.29 33.33 NA 20.00 12.50 30.77 18.18 NA 23.08 14.29 7.14 10.00 45.45 20.69 15.00 21.43 23.08 NA 21.05 NA 23.53 9.52 17.65 10.53 NA 10.53 15.00 15.00 NA 22.22 14.29 NA 21.43 8.33 NA K intron_retention Top3alpha chr2L + chr2L_19499094_19499145 chr2L_19499093_19499094;chr2L_19499145_19499146 chr2L_19498460_19499093;chr2L_19499146_19499607 0.00 0.00 0.00 7.55 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 2.22 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA cwo,noncoding_15870,chr3R_6215619_6216520.0,chr3R_6216827_6217291.0,chr3R_6217556_6219555.0,chr3R_6219984_6221958.0 chr3R + chr3R_6215160_6222426;chr3R_6215160_6222418 chr3R_6215160_6222423 chr3R_6214846_6215159;chr3R_6222427_6222542 1.92 0.00 NA 0.00 NA NA NA 3.85 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 3.57 NA 0.00 2.04 3.23 NA NA 0.00 NA 3.03 2.78 NA NA 0.00 3.45 3.70 0.00 2.86 4.00 0.00 2.44 0.00 0.00 NA 0.00 NA NA NA 2.00 3.12 2.70 0.00 0.00 NA NA 4.76 NA NA 1.92 N jcn_only_AA None chrU - chrU_5771595_5771684 chrU_5771599_5771684 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.17 100.00 100.00 98.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.15 98.42 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention lok,RI_chr2L_20063248_20063377 chr2L + chr2L_20063613_20063671 chr2L_20063612_20063613;chr2L_20063671_20063672 chr2L_20063378_20063612;chr2L_20063672_20064378 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.13 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Atet,chr2L_4334987_4335394.0,chr2L_4335788_4336447.0 chr2L + chr2L_4334105_4336500 chr2L_4334105_4336449 chr2L_4333926_4334104;chr2L_4336501_4336957 94.59 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 94.59 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor vap,RI_chrX_15897976_15899352,I_chrX_15897976_15899654,I_chrX_15898011_15899654,I_chrX_15898427_15899017,RI_chrX_15898427_15899654,RI_chrX_15899237_15899352,I_chrX_15899237_15899654 chrX - chrX_15898427_15899654 chrX_15898427_15899352 chrX_15898361_15898426;chrX_15899655_15899705 100.00 90.00 100.00 87.50 90.91 100.00 100.00 96.43 97.37 100.00 100.00 94.74 100.00 93.33 92.31 97.14 95.00 100.00 100.00 100.00 90.00 100.00 93.33 100.00 100.00 100.00 85.71 83.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 90.00 100.00 95.45 85.71 96.55 100.00 90.91 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette Dyrk3,I_chr4_1233845_1234170 chr4 - chr4_1233845_1234172 chr4_1233845_1234031;chr4_1234117_1234172 chr4_1234032_1234116 chr4_1233745_1233844;chr4_1234173_1234205 36.03 NA NA 66.67 NA NA 26.32 NA 35.71 NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 18.18 NA NA NA NA NA NA 46.15 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG10737 chr2R + chr2R_15062814_15063752;chr2R_15062814_15063692 chr2R_15062814_15063770 chr2R_15062592_15062813;chr2R_15063771_15063852 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389597_9390195;chr2R_9389597_9390151;chr2R_9389597_9389907;chr2R_9389597_9389940;chr2R_9389597_9390293;chr2R_9389597_9389751;chr2R_9389597_9390264;chr2R_9389597_9389757 chr2R_9389597_9389753 chr2R_9389497_9389596;chr2R_9390294_9390295 1.33 1.61 0.00 1.96 0.00 0.00 0.00 0.00 1.25 0.00 0.00 2.63 0.00 0.00 1.20 1.74 5.26 1.10 1.06 3.06 1.33 0.00 2.83 2.74 1.69 2.74 1.41 0.00 3.70 0.00 0.00 0.00 2.33 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 3.12 2.63 1.64 5.88 1.96 1.49 1.64 1.39 1.54 2.99 0.00 2.38 3.33 0.95 1.75 K intron_retention Vha26 chr3R + chr3R_1418503_1418580 chr3R_1418502_1418503;chr3R_1418580_1418581 chr3R_1418290_1418502;chr3R_1418581_1418907 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 K intron_retention CG31033,RI_chr3R_25658089_25658914 chr3R - chr3R_25658071_25658914 chr3R_25658070_25658071;chr3R_25658914_25658915 chr3R_25657989_25658070;chr3R_25658915_25659003 12.86 8.89 19.44 33.33 13.64 11.76 21.88 12.86 11.84 18.52 6.67 14.29 20.59 14.29 7.27 25.58 12.90 13.16 11.11 8.97 14.71 14.29 15.69 3.85 23.08 20.00 10.42 13.16 29.79 13.04 14.29 10.42 14.75 12.12 4.65 31.03 11.43 6.67 15.87 9.21 13.04 12.12 12.50 8.51 11.76 9.64 8.82 10.71 14.94 15.56 9.52 14.29 6.25 11.76 7.55 2.70 10.87 13.89 K multi_cassette CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2439831_2444498 chr3L_2439831_2442435;chr3L_2442961_2443389;chr3L_2443839_2443987;chr3L_2444088_2444498 chr3L_2442436_2442960;chr3L_2443390_2443838;chr3L_2443988_2444087 chr3L_2439731_2439830;chr3L_2444499_2446101 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N intron_retention cul-2,RI_chr2L_21657668_21657832,noncoding_4226,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21656588_21657832 chr2L_21656587_21656588;chr2L_21657832_21657833 chr2L_21656493_21656587;chr2L_21657833_21657932 100.00 NA NA 100.00 NA NA 87.50 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA K alternative_donor NijA chr3L - chr3L_10688516_10688728 chr3L_10688516_10688577 chr3L_10688432_10688515;chr3L_10688729_10688804 0.00 3.12 0.00 6.67 NA 0.00 0.00 2.50 6.06 NA NA 0.00 NA 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 2.08 3.57 0.00 0.00 6.06 0.00 3.85 0.00 3.23 0.00 4.08 2.63 0.00 0.00 0.00 0.00 0.00 0.00 2.13 2.38 NA 0.00 0.00 2.60 0.00 1.67 1.85 0.00 6.67 0.00 0.00 0.00 0.00 0.00 2.70 0.00 K jcn_only_AA nct,I_chr3R_20679262_20679308 chr3R + chr3R_20679809_20680083 chr3R_20679809_20679946 chr3R_20679598_20679808;chr3R_20680084_20680151 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 99.52 100.00 100.00 100.00 100.00 100.00 98.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.48 100.00 K alternative_acceptor CaMKI,I_chr4_466377_467726,I_chr4_467072_467446,I_chr4_467378_467424,RI_chr4_467374_467424,RI_chr4_467482_467543,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_467378_467446 chr4_467378_467424 chr4_467354_467377;chr4_467447_467481 17.65 15.38 NA 42.86 NA NA 26.09 13.64 17.65 NA NA 40.00 17.65 12.50 NA 8.00 NA NA 33.33 23.53 NA NA 27.27 NA NA NA NA NA NA NA 21.05 NA NA 25.00 NA NA NA NA NA 12.50 NA 23.81 16.67 NA NA NA NA NA 21.62 NA 15.38 NA NA NA 11.76 NA 13.33 NA N alternative_donor CG8678,RI_chr2L_21213167_21213227 chr2L - chr2L_21214648_21220259 chr2L_21214648_21215016 chr2L_21213917_21214647;chr2L_21220260_21220516 28.21 21.21 21.88 16.95 14.29 16.67 23.40 12.50 24.14 29.41 15.62 17.74 23.33 18.52 26.67 17.65 20.00 52.17 20.59 31.91 31.82 28.21 33.33 37.50 35.71 24.24 34.62 38.10 38.10 47.06 22.22 35.29 46.15 21.15 21.43 47.06 42.86 33.33 35.71 33.33 36.84 20.31 21.43 21.88 45.00 38.10 31.58 47.83 26.53 20.69 33.33 22.73 33.33 35.71 18.42 43.75 21.43 54.55 K intron_retention Graf,RI_chrX_15652351_15654288,RI_chrX_15652363_15654157,RI_chrX_15652363_15654499,RI_chrX_15654228_15654288 chrX - chrX_15646506_15646573 chrX_15646505_15646506;chrX_15646573_15646574 chrX_15646426_15646505;chrX_15646574_15646755 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 2.86 0.00 0.00 1.64 3.28 0.00 2.04 2.25 0.00 0.00 2.90 0.90 0.00 0.00 2.94 0.00 2.27 1.35 2.35 4.08 2.38 0.00 2.67 0.00 0.00 3.51 0.00 0.00 0.00 0.00 0.00 2.11 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 1.39 1.18 0.00 2.33 0.00 0.00 1.06 1.30 0.00 0.00 N alternative_donor CG11151 chrX + chrX_13634146_13634710;chrX_13634652_13634710 chrX_13634528_13634710 chrX_13634711_13635156;chrX_13633982_13634145 0.23 0.00 0.21 0.17 0.41 0.00 0.28 0.32 0.46 0.00 0.00 0.27 0.45 0.34 0.22 0.26 0.38 0.35 0.25 0.24 0.33 0.38 0.23 0.22 0.38 0.00 0.23 0.33 0.00 0.00 1.02 0.19 0.11 0.17 0.00 0.00 0.21 0.23 0.62 0.15 0.00 0.26 0.30 0.00 0.11 0.00 0.20 0.00 0.29 0.31 0.85 0.47 0.23 0.27 0.22 0.00 0.13 0.08 K jcn_only_AD Nrg,I_chrX_8411470_8425729,RI_chrX_8411636_8425729,RI_chrX_8412432_8425557 chrX + chrX_8411668_8425729;chrX_8411543_8425729 chrX_8411454_8425729 chrX_8425730_8425829;chrX_8411428_8411453 87.50 NA NA 90.48 NA NA NA 90.00 87.50 NA NA 90.91 NA NA NA 68.97 NA NA NA 89.66 NA NA NA NA NA NA NA NA NA NA 87.50 NA 72.00 84.38 NA NA NA NA NA NA NA 91.67 NA NA NA NA NA 47.83 92.59 NA NA NA NA NA NA NA NA 59.09 K jcn_only_AA CG4065,RI_chr2R_20024231_20024292,I_chr2R_20024873_20024921 chr2R - chr2R_20024859_20024921 chr2R_20024873_20024921 chr2R_20024922_20025021;chr2R_20024773_20024858 1.90 3.92 0.00 1.33 0.00 4.17 1.52 5.88 0.97 4.88 0.00 0.00 0.00 0.00 5.45 0.00 2.63 1.92 0.00 0.83 0.00 5.17 1.72 2.90 1.61 0.00 3.90 0.00 2.20 2.41 9.23 4.05 5.31 0.00 0.00 1.56 1.25 3.45 1.39 1.90 3.75 1.90 0.00 4.00 1.41 2.22 1.41 6.44 1.16 1.92 0.00 0.00 2.63 5.13 3.12 3.39 2.00 2.67 K intron_retention RI_chrX_1796525_1796585,mip130,I_chrX_1820956_1821011,CG11596 chrX + chrX_1821927_1822366 chrX_1821926_1821927;chrX_1822366_1822367 chrX_1821726_1821926;chrX_1822367_1822613 81.94 80.95 93.75 75.00 91.67 64.71 81.82 84.00 82.05 76.92 91.67 100.00 93.33 86.67 85.00 78.95 91.67 94.44 88.24 79.41 86.67 75.00 94.74 100.00 81.82 80.95 83.33 88.89 68.75 72.22 48.57 75.00 74.07 72.00 78.95 75.00 88.46 77.78 85.71 85.19 83.33 80.00 92.31 68.42 60.00 78.95 90.91 47.62 87.10 68.42 81.82 NA 91.67 68.42 94.44 88.89 90.91 71.43 K intron_retention CG15881,RI_chr3L_19799338_19799408,Kap-alpha1 chr3L + chr3L_19799733_19799785 chr3L_19799732_19799733;chr3L_19799785_19799786 chr3L_19799610_19799732;chr3L_19799786_19800032 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 11.76 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 K alternative_donor CG14253,E_chr3R_22806425_22807258 chr3R + chr3R_22806824_22809684;chr3R_22806314_22809684 chr3R_22806425_22809684 chr3R_22809685_22809939;chr3R_22806256_22806313 49.07 42.86 53.54 49.48 50.79 62.71 51.69 48.67 37.63 25.00 32.91 25.79 49.07 44.35 51.56 45.74 41.94 63.03 32.00 56.59 60.55 54.72 50.75 47.69 41.86 47.96 48.28 57.14 51.22 53.33 45.93 57.38 55.84 38.34 48.98 63.89 62.50 55.88 56.52 42.70 62.90 43.05 47.06 45.45 40.54 52.94 51.28 42.71 47.06 38.89 57.47 59.09 47.22 33.33 51.97 42.62 65.67 50.00 K intron_retention MB8.chr3R.pasa.66,ref1,RI_chr3R_2904130_2904237,RI_chr3R_2904305_2904543,I_chr3R_2904452_2904543 chr3R - chr3R_2904130_2904543 chr3R_2904129_2904130;chr3R_2904543_2904544 chr3R_2904030_2904129;chr3R_2904544_2904643 5.28 3.83 5.19 10.34 5.45 6.09 5.34 4.58 3.92 4.10 6.80 6.87 11.11 3.26 5.56 13.92 2.97 2.78 7.14 5.28 3.39 15.17 4.22 2.92 6.49 7.69 10.61 10.53 5.77 8.20 6.11 6.35 6.48 6.54 4.90 5.67 2.92 3.79 2.95 3.90 4.35 5.14 7.23 3.53 3.76 2.28 4.31 6.21 6.20 6.00 6.78 4.84 2.40 2.95 6.49 4.00 2.17 3.50 K intron_retention CG31855 chr2L + chr2L_13369319_13369385 chr2L_13369318_13369319;chr2L_13369385_13369386 chr2L_13369210_13369318;chr2L_13369386_13370334 94.44 NA 88.89 96.15 NA NA 100.00 95.00 94.74 NA NA 94.44 NA 87.50 NA 82.61 NA NA 100.00 94.74 NA NA 93.33 100.00 83.33 100.00 100.00 100.00 100.00 NA NA NA NA 91.67 NA NA NA NA 90.91 NA NA 93.75 NA 87.50 NA 90.91 91.67 NA 100.00 100.00 100.00 NA NA 93.33 90.00 90.91 NA NA K alternative_acceptor alpha-Man-I,I_chrX_10218352_10219759,I_chrX_10218390_10219759 chrX - chrX_10218352_10219846;chrX_10218390_10219846 chrX_10218575_10219846 chrX_10219847_10219859;chrX_10218290_10218351 40.00 NA NA NA NA NA NA 33.33 50.00 NA NA NA NA NA NA 37.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 42.86 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG8388 chr2R - chr2R_11897651_11897713 chr2R_11897660_11897713 chr2R_11897714_11898660;chr2R_11897278_11897650 95.45 NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 96.15 NA NA NA NA NA 90.48 NA NA NA NA NA NA NA 95.45 NA NA NA NA 95.65 NA NA NA NA NA NA NA NA NA 95.00 95.45 NA NA NA NA NA NA 95.45 NA K intron_retention rhea,I_chr3L_8563622_8564067 chr3L + chr3L_8565778_8565997 chr3L_8565777_8565778;chr3L_8565997_8565998 chr3L_8565118_8565777;chr3L_8565998_8566572 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 2.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.96 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 K jcn_only_AA SNF1A chrX + chrX_1269789_1269902 chrX_1269789_1269894 chrX_1269580_1269788;chrX_1269903_1270220 100.00 96.30 100.00 100.00 100.00 100.00 100.00 98.44 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 98.15 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 97.14 100.00 100.00 100.00 98.33 98.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG17683,I_chr2R_18774_18869,I_chr2R_19002_19060 chr2R + chr2R_19002_19064 chr2R_19001_19002;chr2R_19064_19065 chr2R_18902_19001;chr2R_19065_19124 100.00 100.00 100.00 100.00 100.00 100.00 98.18 100.00 98.59 100.00 100.00 100.00 100.00 100.00 97.30 97.92 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 96.92 100.00 100.00 96.30 100.00 95.65 100.00 98.33 100.00 100.00 97.62 100.00 100.00 100.00 100.00 98.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD akirin,I_chr3L_7363173_7364806,I_chr3L_7363177_7364806,I_chr3L_7363177_7364831,I_chr3L_7363211_7364831,I_chr3L_7363731_7364806,I_chr3L_7364126_7364806,RI_chr3L_7364737_7364806 chr3L + chr3L_7363177_7364831;chr3L_7363211_7364831 chr3L_7363169_7364831 chr3L_7364832_7364906;chr3L_7363111_7363168 91.89 NA NA NA NA NA NA 90.91 92.50 NA NA 95.83 95.00 95.65 NA 93.62 NA NA NA 90.32 NA 91.30 92.86 90.91 NA NA NA 95.24 NA 92.11 100.00 NA 90.77 84.00 NA NA 84.00 NA NA 91.67 NA 93.33 NA NA NA 90.48 NA NA 86.96 92.68 90.91 NA NA NA NA NA NA NA K cassette pan chr4 + chr4_115242_120031;chr4_115629_120031 chr4_115242_118447,chr4_115629_118447;chr4_118602_120031 chr4_118448_118601 chr4_115049_115241;chr4_120032_120101 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 1.54 0.00 0.00 3.70 0.00 0.00 0.00 0.00 10.53 0.00 2.86 0.00 NA 2.44 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 NA 0.00 0.00 2.17 2.44 NA 0.00 0.00 NA NA 0.00 NA NA NA K jcn_only_AD sta chrX - chrX_1376949_1377290;chrX_1376949_1377143 chrX_1376949_1377164 chrX_1376851_1376948;chrX_1377291_1377379 0.42 1.06 0.48 0.24 0.36 0.17 0.61 0.30 0.37 1.05 0.41 0.35 0.29 0.37 0.29 0.42 0.50 0.37 0.27 0.22 0.31 0.83 2.82 2.32 0.92 0.29 1.14 0.16 0.66 0.44 1.93 0.41 0.14 0.34 2.19 1.11 0.98 1.76 1.59 0.12 0.40 0.32 0.23 0.15 0.39 0.44 1.36 0.18 0.47 1.79 3.46 0.96 0.42 4.72 0.37 1.37 1.89 0.27 N cassette cv-2 chr2R - chr2R_17246690_17254167 chr2R_17246690_17251203;chr2R_17251293_17254167 chr2R_17251204_17251292 chr2R_17246596_17246689;chr2R_17254168_17254445 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 87.72 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG18619,RI_chr2L_10264634_10264691,RI_chr2L_10264634_10264699,I_chr2L_10264634_10264770,RI_chr2L_10265562_10265628 chr2L + chr2L_10264265_10264551 chr2L_10264265_10264548 chr2L_10264122_10264264;chr2L_10264552_10264633 28.19 11.11 23.26 29.85 26.67 25.00 23.21 28.05 24.04 NA 33.33 26.56 35.85 28.57 25.49 28.33 38.71 21.82 30.30 41.67 33.33 26.79 46.15 47.83 30.77 18.75 65.00 47.06 35.71 37.50 22.64 26.47 21.33 16.92 24.00 34.62 54.05 8.77 47.06 36.84 30.00 30.14 17.65 20.90 20.83 26.19 48.00 22.73 24.18 41.18 43.33 15.22 52.63 39.02 25.45 14.10 40.48 21.15 K intron_retention Mdh chr3R + chr3R_22980113_22980177 chr3R_22980112_22980113;chr3R_22980177_22980178 chr3R_22979938_22980112;chr3R_22980178_22981227 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG31919,CG33995,F_chr2L_5045484_5046146 chr2L + chr2L_5043384_5044306;chr2L_5043384_5044582 chr2L_5043384_5045821 chr2L_5043377_5043383 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.62 99.31 98.88 100.00 99.42 100.00 100.00 100.00 100.00 100.00 100.00 98.65 100.00 100.00 100.00 100.00 98.68 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG5792,F_chr2L_12714547_12714695 chr2L - chr2L_12714297_12721450 chr2L_12714296_12714297;chr2L_12721450_12721451 chr2L_12713875_12714296;chr2L_12721451_12721525 15.38 NA NA 25.00 NA NA NA NA 15.79 NA NA 15.38 NA NA NA NA NA NA NA 15.00 NA 36.36 12.50 NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA 13.33 NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA K intron_retention Cam,I_chr2R_8161049_8161270 chr2R + chr2R_8147694_8152247 chr2R_8147693_8147694;chr2R_8152247_8152248 chr2R_8147545_8147693;chr2R_8152248_8152422 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.09 0.00 0.00 0.13 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.30 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention hipk,RI_chr3L_548068_552227 chr3L + chr3L_569817_569878 chr3L_569816_569817;chr3L_569878_569879 chr3L_569527_569816;chr3L_569879_570199 0.35 0.72 1.33 1.72 0.00 0.53 0.00 1.11 0.59 0.00 0.00 1.09 0.00 1.01 0.00 0.44 0.00 0.00 0.00 0.49 0.00 1.38 0.66 0.53 0.46 0.52 0.78 3.78 0.46 0.00 0.00 0.00 0.00 1.40 0.00 0.70 0.34 0.27 0.53 0.69 0.00 0.35 0.00 0.59 0.00 1.48 0.69 0.83 0.51 0.00 0.22 0.00 0.00 0.00 0.00 0.78 0.00 0.00 K intron_retention CG4996,E_chr2R_13627553_13627643,I_chr2R_13629549_13629609 chr2R + chr2R_13627550_13627643 chr2R_13627549_13627550;chr2R_13627643_13627644 chr2R_13627455_13627549;chr2R_13627644_13627743 0.00 NA NA 11.11 NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention Tsp42Ee,RI_chr2R_2904593_2904783 chr2R + chr2R_2904593_2904751 chr2R_2904592_2904593;chr2R_2904751_2904752 chr2R_2904518_2904592;chr2R_2904752_2904880 99.90 99.93 99.93 99.85 99.92 99.71 99.94 99.96 99.83 99.87 99.93 99.91 99.92 99.91 99.78 99.84 99.92 99.84 99.93 99.94 100.00 99.72 99.91 99.95 99.90 99.91 99.94 99.77 100.00 99.76 99.83 99.88 99.48 99.95 99.91 99.90 99.81 99.80 99.84 99.63 100.00 99.96 99.79 99.90 99.60 99.94 99.89 100.00 99.83 99.90 99.94 99.92 99.87 99.91 99.80 99.80 99.96 99.86 K intron_retention CG2811,I_chr2R_20828961_20829772 chr2R - chr2R_20827366_20827428 chr2R_20827365_20827366;chr2R_20827428_20827429 chr2R_20827302_20827365;chr2R_20827429_20827526 97.50 100.00 97.37 95.65 100.00 97.14 97.50 98.11 98.36 93.33 100.00 98.48 100.00 97.06 97.87 98.25 92.00 96.97 100.00 95.51 97.22 87.50 97.06 97.78 95.83 100.00 96.43 100.00 100.00 92.86 97.83 91.67 95.24 97.92 100.00 95.83 96.15 95.83 96.88 93.10 100.00 94.12 89.66 100.00 100.00 97.56 97.83 100.00 100.00 96.88 97.37 100.00 96.00 100.00 97.44 93.88 98.00 100.00 K alternative_acceptor Cf2,I_chr2L_4882802_4882864 chr2L - chr2L_4882802_4882864;chr2L_4882366_4882864 chr2L_4882493_4882864 chr2L_4882865_4882964;chr2L_4881215_4882365 75.00 75.00 57.14 64.29 85.71 66.67 33.33 75.00 72.22 88.89 85.71 78.95 75.00 75.00 87.50 57.14 66.67 50.00 62.50 77.78 83.33 80.56 84.21 54.55 70.00 75.00 78.57 60.00 77.78 90.91 71.43 76.92 81.25 60.00 80.00 77.78 75.00 88.89 54.55 73.33 81.82 72.73 40.00 66.67 73.33 76.92 62.50 78.38 70.59 75.00 66.67 57.14 100.00 83.33 77.78 66.67 50.00 84.00 K alternative_donor CG12946,noncoding_15730,I_chr3R_5599701_5600032,I_chr3R_5609682_5609889 chr3R - chr3R_5599701_5600041 chr3R_5599701_5600032 chr3R_5599601_5599700;chr3R_5600042_5600132 66.67 NA NA NA NA NA NA NA 56.25 NA NA 91.67 NA NA 60.00 NA NA NA NA 70.00 NA NA NA NA NA NA 55.56 NA NA 75.00 NA NA NA NA NA NA NA NA 69.23 61.54 NA 66.67 NA NA NA NA NA NA 77.78 NA 55.56 NA NA NA NA NA NA NA K alternative_acceptor RpS3A,I_chr4_87364_87465,I_chr4_87533_87717,I_chr4_87549_87717,I_chr4_87549_87769 chr4 - chr4_87648_87717;chr4_87533_87717 chr4_87549_87717 chr4_87718_87817;chr4_87466_87532 25.92 26.86 32.97 32.71 10.24 33.01 11.86 NA 19.25 40.80 NA 23.03 NA 14.33 NA 28.94 NA 25.73 41.13 34.73 17.54 19.87 27.80 26.15 26.07 32.64 22.32 26.32 41.55 28.57 15.42 14.70 19.16 17.66 25.50 NA 32.61 42.20 18.05 11.95 15.64 17.56 NA 14.16 32.61 23.60 18.60 27.03 25.77 38.03 41.63 7.05 35.57 35.76 41.91 14.12 12.32 27.33 K alternative_donor I_chr2R_7171366_7171418,fbl6,dare chr2R - chr2R_7176066_7176572;chr2R_7176066_7177174 chr2R_7176066_7176897 chr2R_7175150_7176065;chr2R_7177175_7177253 72.41 77.78 63.16 73.53 70.00 70.59 77.78 79.41 68.42 63.64 40.00 58.62 85.71 64.29 70.00 62.96 88.24 78.57 69.57 77.27 75.00 69.23 80.77 87.50 69.23 71.43 73.91 66.67 78.57 76.47 78.95 63.64 69.23 72.41 81.25 66.67 68.18 73.33 80.00 69.23 55.56 82.35 50.00 70.59 75.00 76.92 80.00 68.18 74.36 71.43 73.91 77.78 50.00 72.73 77.78 80.00 71.43 58.33 K intron_retention Actn,I_chrX_1929229_1936079,I_chrX_1929235_1930613,I_chrX_1929445_1930439,I_chrX_1929474_1930439,usp,I_chrX_1935420_1935493,I_chrX_1935678_1936079,I_chrX_1935889_1936079 chrX - chrX_1929235_1930439 chrX_1929234_1929235;chrX_1930439_1930440 chrX_1929135_1929234;chrX_1930440_1930472 14.29 NA NA 14.29 NA NA NA NA 25.00 9.52 NA NA NA NA NA NA NA NA NA 16.67 NA 27.59 13.33 15.00 NA NA NA NA 15.79 NA NA NA 18.75 NA NA 16.67 3.85 0.00 NA 33.33 NA 33.33 NA 9.52 13.33 NA NA 13.04 14.29 NA NA NA NA NA NA NA 7.14 NA K alternative_acceptor CG7546 chr3L + chr3L_7508878_7508970;chr3L_7508878_7508967 chr3L_7508878_7508925 chr3L_7508741_7508877;chr3L_7508971_7509150 11.11 10.00 11.11 13.95 7.69 11.11 10.00 12.50 8.75 13.33 8.00 10.91 11.54 15.38 11.11 10.34 11.11 7.14 21.05 15.15 13.79 17.07 10.09 11.69 11.36 9.52 10.14 10.87 13.95 14.00 9.09 12.12 20.45 11.63 14.63 9.26 10.20 11.90 9.76 10.94 12.90 15.25 5.88 7.58 15.00 10.71 15.49 11.11 11.67 11.59 12.64 11.90 10.53 11.11 15.38 11.11 9.72 23.33 K alternative_acceptor tral,I_chr3L_12512171_12512251 chr3L + chr3L_12511768_12511832 chr3L_12511768_12511829 chr3L_12511538_12511767;chr3L_12511833_12512170 6.59 5.43 7.04 8.68 6.45 8.11 5.88 5.37 5.54 6.56 6.59 7.37 5.75 6.02 8.51 5.15 9.68 7.07 6.80 6.76 7.41 6.29 5.13 6.45 5.32 7.77 6.19 9.52 7.23 6.12 8.14 8.72 7.57 4.72 8.54 9.22 6.74 6.09 6.75 5.73 5.11 6.32 7.77 7.11 4.26 5.18 4.60 8.46 8.50 4.23 5.19 5.60 7.57 5.24 8.40 6.32 7.24 7.54 K jcn_only_AD Gp150,I_chr2R_18205316_18205386,I_chr2R_18213233_18213308 chr2R + chr2R_18205274_18205386;chr2R_18205243_18205386;chr2R_18205282_18205386 chr2R_18205316_18205386 chr2R_18205387_18205459;chr2R_18205216_18205242 1.42 1.16 2.00 0.79 0.84 0.39 1.38 1.62 0.71 1.35 0.61 1.45 1.24 0.80 4.08 0.18 0.88 0.88 0.45 0.78 0.27 2.30 1.79 2.00 1.89 0.28 3.45 2.04 1.45 5.56 1.42 0.00 3.59 1.29 0.98 4.29 2.10 1.85 0.53 3.47 4.65 0.95 0.88 6.25 0.00 4.26 2.82 0.00 0.89 0.00 1.90 1.97 3.85 8.82 1.39 1.49 4.81 1.90 K alternative_donor CG3967,RI_chr3L_9408567_9410728,RI_chr3L_9412100_9412179 chr3L - chr3L_9412100_9412194 chr3L_9412100_9412179 chr3L_9412000_9412099;chr3L_9412195_9412279 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 3.85 0.00 NA 3.85 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA 4.35 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.56 0.00 0.00 0.00 3.03 0.00 0.00 NA NA 4.55 0.00 0.00 0.00 2.08 K jcn_only_AA Doa,I_chr3R_24715823_24718923,I_chr3R_24747391_24747896 chr3R + chr3R_24746992_24747080 chr3R_24746992_24747062 chr3R_24746878_24746991;chr3R_24747081_24747146 6.67 5.83 6.53 5.07 6.43 7.41 2.55 5.74 8.13 6.47 9.29 5.79 6.67 4.81 5.95 7.37 8.93 6.52 9.27 4.03 8.00 6.97 4.18 7.55 6.67 12.27 5.22 9.17 8.90 5.76 6.67 7.94 12.79 5.57 4.43 7.25 10.82 1.40 6.51 7.12 8.04 6.74 5.80 5.94 7.89 9.21 4.18 5.43 7.26 8.78 4.44 2.23 6.80 4.13 6.25 7.81 9.90 10.34 N intron_retention msn,I_chr3L_2558033_2560115,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2558390_2563817 chr3L_2558389_2558390;chr3L_2563817_2563818 chr3L_2558293_2558389;chr3L_2563818_2563917 39.60 38.46 NA 45.00 53.85 NA 62.50 100.00 40.74 NA NA 61.11 NA NA 50.00 NA NA NA NA 100.00 NA 4.55 27.27 35.71 NA NA 25.00 NA NA 30.77 NA NA NA NA NA NA 11.11 NA 36.84 56.25 NA 100.00 NA NA 20.00 NA NA 25.00 100.00 NA 30.77 NA NA NA NA NA NA NA K jcn_only_AD tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_563503_565293 chr3R_563503_565232 chr3R_563488_563502;chr3R_565294_565301 68.75 NA NA 58.97 NA NA 81.82 78.12 58.02 NA NA 76.00 66.67 NA 70.83 45.45 NA NA NA 75.00 NA NA NA NA NA 52.38 NA NA NA NA 78.12 NA NA 66.67 NA NA NA NA NA NA NA 71.43 NA NA NA NA NA NA 73.47 NA NA 59.09 NA NA 63.41 NA NA NA K multi_cassette lap,I_chr3R_3017854_3019314 chr3R + chr3R_3019411_3024049 chr3R_3019411_3021337;chr3R_3021618_3022015;chr3R_3022116_3024049 chr3R_3021338_3021617;chr3R_3022016_3022115 chr3R_3019315_3019410;chr3R_3024050_3024362 75.00 NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG17471,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1216223_1216285 chr4_1216222_1216223;chr4_1216285_1216286 chr4_1216163_1216222;chr4_1216286_1216354 3.33 0.00 3.51 7.94 0.00 0.00 2.22 2.65 3.96 NA 0.00 4.26 6.90 5.45 0.00 7.32 0.00 0.00 3.70 0.00 0.00 0.00 3.33 3.33 11.76 0.00 6.67 NA NA 0.00 5.33 10.53 7.14 3.70 0.00 10.53 NA NA 9.52 2.94 0.00 4.12 5.06 0.00 13.33 8.33 0.00 0.00 5.17 4.76 5.71 3.33 NA 3.45 0.00 0.00 0.00 0.00 K jcn_only_AA CG13384 chr2L + chr2L_8386386_8386474;chr2L_8386386_8386486 chr2L_8386386_8386483 chr2L_8386217_8386385;chr2L_8386487_8387378 37.46 36.62 40.36 38.12 39.41 38.55 39.36 38.60 35.92 33.47 37.45 37.40 38.95 37.93 38.02 35.23 36.94 39.74 37.67 33.77 40.11 37.17 33.65 36.36 36.17 41.60 37.35 37.46 39.68 39.98 41.22 37.31 38.42 38.13 36.57 36.70 35.36 36.43 33.73 38.90 41.19 37.13 35.63 37.38 36.73 39.55 39.92 36.72 37.70 33.33 35.31 37.12 40.78 38.24 38.63 38.61 37.02 41.06 K alternative_donor Atg6,I_chr3R_19876189_19876240 chr3R - chr3R_19876189_19876244 chr3R_19876189_19876240 chr3R_19876089_19876188;chr3R_19876245_19876340 0.00 6.67 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 5.26 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 5.56 0.00 0.00 K cassette CG42595,I_chr2RHet_3155517_3174709,RI_chr2RHet_3175044_3179353,RI_chr2RHet_3179300_3179586,I_chr2RHet_3179481_3179586 chr2RHet - chr2RHet_3179300_3179586;chr2RHet_3175044_3179586 chr2RHet_3179300_3179353,chr2RHet_3175044_3179353;chr2RHet_3179494_3179586 chr2RHet_3179354_3179493 chr2RHet_3174944_3175043;chr2RHet_3179587_3179598 90.91 84.62 86.96 87.50 85.71 90.91 97.73 91.30 93.33 100.00 72.73 72.73 91.30 89.47 73.33 86.36 85.71 75.00 96.30 94.12 69.23 100.00 100.00 88.89 100.00 70.00 88.89 NA 85.71 83.33 95.00 87.50 100.00 89.58 100.00 91.67 100.00 100.00 NA 100.00 100.00 88.24 95.00 95.00 100.00 100.00 100.00 75.00 90.91 NA 90.91 100.00 87.50 NA 75.00 85.71 90.00 84.00 K intron_retention CG15098,I_chr2R_14721883_14721980 chr2R - chr2R_14721624_14721815 chr2R_14721623_14721624;chr2R_14721815_14721816 chr2R_14721470_14721623;chr2R_14721816_14721882 0.32 0.26 0.24 0.43 0.14 0.00 0.54 0.36 0.25 0.30 0.13 0.14 0.00 0.42 0.41 0.71 0.00 0.25 0.00 0.29 0.00 0.84 0.23 0.38 0.88 0.00 0.47 1.62 0.42 0.69 0.44 0.22 0.72 0.42 0.21 0.38 0.13 0.31 0.26 0.51 0.78 0.32 0.32 0.21 0.40 0.66 0.42 0.57 0.15 0.23 0.50 0.37 0.00 0.00 0.42 0.14 0.00 0.45 K intron_retention glo,REI_chr3R_7644679_7644932,RI_chr3R_7644683_7644880,I_chr3R_7647556_7647628 chr3R - chr3R_7641488_7641562 chr3R_7641487_7641488;chr3R_7641562_7641563 chr3R_7641040_7641487;chr3R_7641563_7642266 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 K mutually_exclusive RI_chr2L_22125119_22126416,CycK,RI_chr2L_22126776_22130098,I_chr2L_22129256_22129319,I_chr2L_22129837_22129893 chr2L - chr2L_22125119_22128497,chr2L_22129899_22130098 chr2L_22125119_22126416,chr2L_22126776_22130098 chr2L_22128498_22129898 chr2L_22126417_22126775 chr2L_22125065_22125118;chr2L_22130099_22130142 1.75 1.46 3.05 1.97 4.55 1.49 1.99 17.95 8.82 1.20 1.15 1.94 4.82 5.49 3.37 7.14 6.56 3.81 4.64 7.56 1.02 0.75 1.92 1.23 1.32 1.75 1.93 0.68 0.78 1.54 4.82 1.05 1.15 5.59 2.56 1.14 0.72 1.14 1.62 1.38 0.69 10.71 6.45 3.47 0.46 1.01 1.82 0.60 3.49 1.23 1.56 1.85 0.80 0.99 5.93 1.42 2.34 1.24 K alternative_donor pgant6 chr3L + chr3L_2782497_2782737;chr3L_2782556_2782737 chr3L_2782414_2782737 chr3L_2782738_2783472;chr3L_2782330_2782413 70.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 70.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA deltaCOP,I_chrX_1754047_1754089,I_chrX_1755132_1755191,E_chrX_1755139_1755188,I_chrX_1757755_1757801 chrX - chrX_1754655_1754718 chrX_1754658_1754718 chrX_1754719_1755131;chrX_1754460_1754654 27.80 29.80 27.06 24.07 31.40 26.98 27.80 25.20 27.50 27.93 22.92 27.12 23.58 29.57 27.41 27.27 22.88 23.26 27.35 30.39 28.41 32.35 28.98 28.74 29.69 25.57 32.51 39.30 26.34 25.30 25.19 27.78 28.68 26.05 28.04 25.09 31.85 30.49 32.14 30.31 30.57 27.91 32.06 29.98 22.06 27.92 22.56 31.61 22.54 25.30 29.14 30.29 26.06 30.05 21.17 25.37 26.62 29.58 K intron_retention Not1,I_chr2R_5463624_5463682 chr2R - chr2R_5461206_5461291 chr2R_5461205_5461206;chr2R_5461291_5461292 chr2R_5460962_5461205;chr2R_5461292_5462451 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG8043,CG11755 chr3R + chr3R_4502770_4502817;chr3R_4502770_4502834;chr3R_4502770_4502810 chr3R_4502770_4502843 chr3R_4502645_4502769;chr3R_4502844_4503955 0.00 NA 4.55 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 6.67 0.00 0.00 NA 0.00 5.00 0.00 NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA 4.35 9.52 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA 0.00 NA NA NA 0.00 0.00 0.00 0.00 N jcn_only_AA I_chr3L_9481026_9484943,noncoding_11665 chr3L + chr3L_9481349_9481457;chr3L_9481349_9484943 chr3L_9481349_9481415 chr3L_9481282_9481348;chr3L_9484944_9485043 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention RpS18,CG8908,EI_chr2R_16151918_16151997,I_chr2R_16151918_16152036,I_chr2R_16151938_16152065,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16151942_16151997 chr2R_16151941_16151942;chr2R_16151997_16151998 chr2R_16151842_16151941;chr2R_16151998_16152066 91.31 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA 83.33 93.33 89.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG30492,C_chr2R_3522706_3523025,RI_chr2R_3536203_3536977,I_chr2R_3543397_3543455 chr2R + chr2R_3516618_3517681 chr2R_3516617_3516618;chr2R_3517681_3517682 chr2R_3516571_3516617;chr2R_3517682_3517750 7.69 NA 0.00 0.00 14.29 7.69 NA 8.33 0.00 NA NA 0.00 NA NA 11.11 10.53 13.33 0.00 0.00 13.04 NA NA 6.67 NA NA 15.38 NA NA 18.75 12.50 NA NA 14.29 7.41 NA NA 6.67 6.67 NA 8.33 NA 7.89 NA 5.26 NA 10.53 NA 6.06 8.33 NA NA NA NA NA 4.35 NA NA 0.00 K cassette CG7358,I_chrX_18784661_18784773 chrX - chrX_18784515_18784773 chrX_18784515_18784578;chrX_18784661_18784773 chrX_18784579_18784660 chrX_18784488_18784514;chrX_18784774_18784782 12.35 11.54 6.67 14.29 20.00 10.00 23.53 9.68 15.56 6.67 12.50 16.13 26.32 NA 11.54 13.04 13.33 9.09 22.22 16.33 15.38 16.67 7.58 16.67 15.00 10.53 3.12 7.41 21.05 11.11 47.83 16.67 17.65 6.25 17.65 5.26 4.48 10.42 9.30 12.90 14.29 12.20 10.00 24.00 4.35 18.52 12.50 9.52 9.30 6.82 23.33 9.68 10.53 6.25 13.04 8.82 6.45 13.33 K intron_retention Sh3beta,I_chr3L_7361085_7361784 chr3L - chr3L_7362231_7362326 chr3L_7362230_7362231;chr3L_7362326_7362327 chr3L_7361990_7362230;chr3L_7362327_7362333 81.82 81.82 75.86 75.66 64.91 84.48 82.88 70.86 69.04 79.41 69.84 81.43 72.13 69.57 81.11 75.95 66.67 68.75 72.81 74.82 58.21 79.61 88.42 87.62 92.86 89.47 92.16 89.39 93.62 83.93 65.42 80.00 83.33 80.00 90.00 93.55 72.73 88.64 82.86 85.14 87.72 74.70 73.49 84.00 82.61 91.14 90.41 80.95 78.07 79.69 91.76 88.10 85.48 92.31 80.53 84.52 83.87 83.53 K jcn_only_AA Fur2,RI_chrX_16267905_16268958,I_chrX_16270205_16270272,I_chrX_16274795_16274867 chrX + chrX_16274795_16274867 chrX_16274795_16274859 chrX_16274695_16274794;chrX_16274868_16274967 99.49 100.00 99.26 99.49 100.00 98.11 100.00 99.59 99.75 100.00 100.00 97.60 98.26 100.00 98.67 98.26 100.00 97.95 100.00 99.52 100.00 98.59 99.35 98.46 100.00 98.52 100.00 100.00 100.00 99.28 99.15 99.06 99.49 100.00 100.00 98.21 99.49 99.00 100.00 99.29 98.82 98.60 100.00 99.28 99.24 99.07 100.00 100.00 99.60 99.20 100.00 100.00 98.02 100.00 98.37 99.30 98.82 100.00 K alternative_donor MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17398749_17398908 chr2R_17398771_17398908 chr2R_17398909_17399008;chr2R_17398671_17398748 0.00 0.00 0.00 1.82 2.22 0.00 3.03 1.96 1.19 0.00 0.00 1.49 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.72 2.86 2.38 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 1.54 0.00 2.27 0.00 2.38 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG13602,I_chr3R_19753657_19753715 chr3R - chr3R_19753657_19753717;chr3R_19753657_19753869 chr3R_19753657_19753715 chr3R_19753602_19753656;chr3R_19753870_19754006 10.00 25.00 16.67 NA NA NA 0.00 0.00 11.11 NA NA 14.29 NA NA NA 0.00 NA NA NA 0.00 0.00 NA 16.67 25.00 NA NA NA NA NA 0.00 10.00 0.00 NA NA NA 25.00 NA 28.57 0.00 11.11 16.67 20.00 NA NA 33.33 0.00 10.00 0.00 25.00 NA 25.00 NA NA 0.00 0.00 0.00 0.00 33.33 K cassette PhKgamma,I_chrX_11590183_11590435,I_chrX_11596563_11597322 chrX + chrX_11592631_11597322;chrX_11593440_11597322 chrX_11592631_11594653,chrX_11593440_11594653;chrX_11595161_11597322 chrX_11594654_11595160 chrX_11592533_11592630;chrX_11597323_11597422 84.38 92.31 88.24 75.61 70.97 84.00 97.06 78.05 83.33 87.10 91.30 96.08 33.33 85.19 76.67 91.67 75.00 83.33 78.26 84.15 100.00 66.15 84.38 87.93 84.62 81.82 81.13 66.67 79.55 81.36 83.87 96.97 93.44 83.33 76.92 95.24 94.05 88.24 88.46 83.56 89.47 80.00 86.96 86.27 90.00 78.43 85.42 81.82 86.54 81.48 78.69 86.21 92.31 81.63 85.19 84.09 91.67 92.86 K cassette eIF5B,I_chr3L_3429084_3443457,I_chr3L_3432366_3445364 chr3L - chr3L_3432366_3445364 chr3L_3432366_3443457;chr3L_3443566_3445364 chr3L_3443458_3443565 chr3L_3432266_3432365;chr3L_3445365_3445464 99.57 100.00 99.44 100.00 100.00 99.36 96.65 99.65 99.54 99.21 100.00 99.72 99.15 99.39 99.49 99.12 100.00 100.00 99.42 100.00 99.31 98.28 99.70 100.00 99.43 100.00 99.15 99.50 90.48 100.00 99.57 99.56 99.53 99.66 99.51 99.54 99.60 99.50 100.00 98.81 98.66 99.76 100.00 99.61 99.70 99.29 99.65 99.45 99.48 99.65 99.68 99.35 100.00 99.61 99.53 100.00 99.63 99.74 K intron_retention alph,I_chr3R_25417890_25422962 chr3R + chr3R_25417890_25418993 chr3R_25417889_25417890;chr3R_25418993_25418994 chr3R_25417790_25417889;chr3R_25418994_25419629 1.05 1.98 2.29 2.31 0.00 3.64 1.74 1.05 1.11 0.00 0.00 0.92 0.00 0.97 2.96 0.61 0.00 0.00 0.00 1.35 1.03 19.67 2.15 0.00 1.92 0.00 1.45 7.46 6.25 2.35 0.00 0.00 1.50 0.00 2.90 7.04 0.00 1.41 2.22 1.63 2.22 0.00 1.05 2.70 2.35 0.00 1.72 0.00 1.95 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.60 K alternative_donor Elp3 chr2L + chr2L_4444833_4444894 chr2L_4444837_4444894 chr2L_4444895_4444963;chr2L_4444769_4444832 29.03 30.77 26.09 10.00 26.32 40.00 26.32 34.88 28.99 20.00 29.03 35.42 33.33 44.00 29.03 58.54 39.13 29.63 53.33 22.22 33.33 16.67 12.82 5.88 25.00 22.22 31.82 NA 33.33 22.22 54.84 25.00 31.03 52.78 36.84 25.00 24.00 22.22 21.88 25.71 29.41 31.75 36.36 45.00 26.09 32.00 30.43 40.00 39.34 14.29 14.81 22.73 13.64 NA 37.04 33.33 8.11 10.87 K alternative_acceptor RpS3A,I_chr4_87364_87465,I_chr4_87533_87717,I_chr4_87549_87717,I_chr4_87549_87769 chr4 - chr4_87648_87717;chr4_87549_87717 chr4_87533_87717 chr4_87718_87817;chr4_87466_87532 0.03 0.03 0.03 0.02 0.04 0.00 0.00 NA 0.01 0.10 NA 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.05 0.00 0.06 0.05 0.06 0.06 0.20 0.08 0.25 0.02 0.06 NA 0.00 0.00 0.04 0.05 0.11 0.01 NA 0.00 0.17 0.07 0.04 0.08 0.00 0.12 0.03 0.00 0.05 0.04 0.00 0.00 0.00 0.00 K intron_retention CG8531,RI_chr2R_10144869_10144912 chr2R + chr2R_10145875_10145936 chr2R_10145874_10145875;chr2R_10145936_10145937 chr2R_10145451_10145874;chr2R_10145937_10146302 1.72 0.00 2.33 5.19 2.38 0.00 5.10 2.00 3.08 3.39 0.00 1.95 1.82 3.64 2.50 0.00 2.00 2.30 0.00 1.92 0.00 5.49 0.00 0.79 1.59 6.35 4.35 4.90 3.03 2.60 0.00 0.00 1.26 0.00 4.71 4.76 0.95 0.00 0.00 2.11 5.43 2.17 0.00 0.00 3.17 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 2.13 0.98 2.86 K cassette mld chr3R + chr3R_20446836_20448643 chr3R_20446836_20447997;chr3R_20448139_20448643 chr3R_20447998_20448138 chr3R_20446101_20446835;chr3R_20448644_20449325 0.00 2.56 0.00 2.56 5.88 3.23 3.57 2.22 3.08 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 7.41 2.38 3.57 0.00 0.00 0.00 2.22 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 2.33 0.00 0.00 2.17 6.56 1.96 0.00 0.00 0.00 0.00 2.70 2.50 0.00 0.00 K alternative_acceptor CG6860,RFI_chr2L_17371821_17372564 chr2L - chr2L_17368389_17372564 chr2L_17371821_17372564 chr2L_17372565_17372642;chr2L_17368289_17368388 13.43 11.76 15.96 16.67 10.00 8.08 21.18 16.80 16.36 11.36 13.92 15.58 15.07 18.39 15.05 32.17 12.68 13.25 16.13 13.47 16.22 6.03 16.42 11.72 12.50 7.06 13.39 13.16 13.58 13.22 14.63 9.09 10.95 18.94 13.73 13.33 9.58 12.00 10.06 12.30 10.39 13.64 16.25 18.02 5.96 13.43 16.67 14.29 17.42 10.68 13.51 18.06 12.16 11.11 15.79 10.83 11.39 9.93 K jcn_only_AA Cip4,I_chr3L_4325411_4326640,I_chr3L_4363128_4363769,I_chr3L_4363386_4363987 chr3L - chr3L_4325384_4326983 chr3L_4325411_4326983 chr3L_4326984_4327170;chr3L_4325311_4325383 100.00 99.17 100.00 98.03 100.00 99.28 100.00 98.82 100.00 100.00 100.00 99.31 100.00 99.35 100.00 100.00 99.30 98.82 99.50 91.99 98.90 100.00 99.07 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.41 98.77 100.00 99.25 100.00 100.00 100.00 99.05 99.27 100.00 100.00 100.00 100.00 98.68 100.00 99.22 100.00 100.00 99.43 100.00 100.00 99.16 100.00 100.00 100.00 100.00 98.54 100.00 K alternative_acceptor mld,atl chr3R + chr3R_20451535_20457511 chr3R_20451535_20457504 chr3R_20451524_20451534;chr3R_20457512_20457813 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 91.67 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 92.86 100.00 100.00 94.12 100.00 91.67 93.33 100.00 100.00 92.31 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 NA 100.00 K alternative_acceptor Obp18a chrX - chrX_19029762_19029825 chrX_19029772_19029825 chrX_19029826_19029937;chrX_19029113_19029761 100.00 NA NA 92.31 NA NA NA 88.89 100.00 100.00 NA NA NA NA 100.00 100.00 NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA 100.00 NA NA 93.33 NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA K intron_retention Bet3 chr3L - chr3L_9432152_9432249 chr3L_9432151_9432152;chr3L_9432249_9432250 chr3L_9431582_9432151;chr3L_9432250_9432660 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 2.13 0.00 NA 2.27 0.00 NA 9.52 NA NA 5.56 5.26 2.94 NA 16.67 0.00 0.00 0.00 2.38 0.00 NA NA 4.76 0.00 0.00 NA 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 4.17 7.14 0.00 6.25 5.41 0.00 0.00 NA 0.00 4.65 0.00 0.00 2.04 7.69 K alternative_acceptor EDTP chr2R - chr2R_13322478_13331840 chr2R_13322481_13331840 chr2R_13331841_13332419;chr2R_13321630_13322477 100.00 NA NA NA NA NA 90.00 100.00 100.00 NA NA 91.67 NA NA 100.00 NA NA NA NA 100.00 NA NA 100.00 87.50 NA NA 100.00 NA NA NA NA NA NA 100.00 NA 90.00 100.00 NA 100.00 90.91 NA 100.00 NA 87.50 NA NA NA NA 90.00 NA NA NA NA NA 88.89 NA NA NA N alternative_donor Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11835112_11835624;chr2R_11835112_11835509 chr2R_11835112_11835668 chr2R_11834432_11835111;chr2R_11835669_11836215 9.71 12.22 13.70 10.64 10.77 8.93 3.08 5.41 6.29 8.96 12.00 11.86 17.39 12.50 8.33 13.11 6.00 8.47 7.14 11.28 10.20 11.05 11.11 11.38 4.29 1.61 14.55 10.87 6.25 12.63 6.15 10.84 12.40 8.24 14.46 8.97 14.71 9.52 9.56 9.49 4.26 11.03 7.32 6.82 12.40 12.88 8.13 8.65 5.66 17.39 8.66 11.39 11.54 9.71 5.80 12.70 6.02 6.35 K jcn_only_AA CG31211 chr3R + chr3R_7777961_7778368;chr3R_7777961_7778362 chr3R_7777961_7778390 chr3R_7777954_7777960;chr3R_7778391_7778487 0.00 0.00 0.00 0.00 NA 3.23 0.00 3.45 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 2.13 NA NA 2.78 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 NA 0.00 0.00 0.00 2.27 NA 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.45 2.17 3.57 2.38 K intron_retention kuz,F_chr2L_13635998_13637287,I_chr2L_13636762_13637287 chr2L + chr2L_13636844_13637287 chr2L_13636843_13636844;chr2L_13637287_13637288 chr2L_13636505_13636843;chr2L_13637288_13637387 28.87 27.27 20.00 10.38 NA 50.00 18.60 36.36 23.40 20.00 23.33 12.90 56.25 37.50 35.48 30.36 28.57 14.63 40.00 16.33 12.82 35.29 32.26 21.74 18.18 15.56 36.36 36.84 29.17 65.52 20.00 40.00 24.53 38.71 22.22 25.71 25.71 33.33 18.52 42.86 17.65 25.58 36.36 36.84 16.67 33.33 NA 37.04 30.56 30.77 42.86 28.57 NA NA 39.13 NA 26.09 40.00 K intron_retention RpL8,I_chr3L_2589746_2592161 chr3L + chr3L_2587891_2588083 chr3L_2587890_2587891;chr3L_2588083_2588084 chr3L_2587751_2587890;chr3L_2588084_2588997 0.00 0.00 0.04 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.04 0.11 0.02 0.02 0.00 0.02 0.06 0.16 0.03 0.02 0.03 0.00 0.00 0.00 0.01 0.00 0.04 0.00 0.00 0.02 0.04 0.00 0.00 0.00 0.00 0.02 0.00 0.03 0.08 0.05 0.00 0.02 0.04 0.01 0.00 0.00 0.04 0.03 K intron_retention pug chr3R + chr3R_6525545_6525606 chr3R_6525544_6525545;chr3R_6525606_6525607 chr3R_6525473_6525544;chr3R_6525607_6525817 0.00 NA NA 15.79 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 10.53 NA NA NA 0.00 NA NA NA 7.69 NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2813977;chr2R_2814097_2814174;chr2R_2814327_2816013;chr2R_2816342_2816577;chr2R_2816779_2817327;chr2R_2817604_2817753 chr2R_2813978_2814096;chr2R_2814175_2814326;chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817328_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Dyrk3,I_chr4_1233845_1234170 chr4 - chr4_1234147_1234223 chr4_1234146_1234147;chr4_1234223_1234224 chr4_1234032_1234146;chr4_1234224_1234270 61.80 NA NA 42.86 NA NA 62.50 77.78 61.11 NA NA 45.45 NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_last_exon pes chr2L - chr2L_7989552_7991357 chr2L_7991260_7991357 chr2L_7989243_7989551 chr2L_7990964_7991259 chr2L_7991358_7991551 0.00 0.42 0.00 0.00 0.00 0.00 0.32 0.28 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.43 0.00 0.71 0.00 0.36 0.00 0.00 0.33 0.44 0.55 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.46 0.50 0.00 0.00 0.53 0.31 0.49 0.00 0.00 0.36 0.00 0.37 0.00 K intron_retention zetaCOP chr3L - chr3L_16666525_16666581 chr3L_16666524_16666525;chr3L_16666581_16666582 chr3L_16666424_16666524;chr3L_16666582_16666650 0.00 0.00 0.00 0.76 0.88 0.00 0.71 1.14 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 1.17 0.00 0.00 12.00 0.00 4.88 1.60 10.26 0.00 9.32 2.50 0.00 0.00 0.73 0.97 0.00 6.12 0.00 0.00 2.04 0.00 2.50 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.58 0.00 6.25 0.00 1.37 NA 0.44 0.00 0.00 0.65 K intron_retention Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2629684_2629913 chr3L_2629683_2629684;chr3L_2629913_2629914 chr3L_2629141_2629683;chr3L_2629914_2629921 100.00 NA 90.00 97.44 NA 100.00 100.00 100.00 96.43 NA NA 100.00 92.59 100.00 100.00 98.65 NA NA 96.30 97.50 NA NA 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA 93.33 NA NA NA 100.00 92.31 100.00 92.31 NA NA 100.00 NA 100.00 97.83 NA 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 K intron_retention vap,RI_chrX_15899237_15899352,I_chrX_15899237_15899654 chrX - chrX_15894852_15894916 chrX_15894851_15894852;chrX_15894916_15894917 chrX_15894701_15894851;chrX_15894917_15895823 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 7.32 6.82 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.65 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 N alternative_acceptor Moca-cyp chr3R + chr3R_24167182_24167348;chr3R_24167182_24167249;chr3R_24167182_24167243;chr3R_24167182_24167260 chr3R_24167182_24167906 chr3R_24167094_24167181;chr3R_24167907_24167936 27.42 26.19 26.47 15.38 26.09 40.54 12.82 19.67 23.61 34.62 29.41 27.42 21.43 24.14 28.95 35.09 24.14 29.17 25.00 32.63 27.27 54.90 26.76 26.92 25.81 20.00 24.14 25.00 28.26 40.74 5.38 62.50 77.69 26.98 36.17 34.04 27.69 32.56 27.42 26.14 35.29 19.44 30.00 19.35 44.23 36.21 36.96 50.00 24.64 29.27 23.81 22.86 30.30 27.27 25.64 29.79 34.09 52.70 K jcn_only_AA cwo,noncoding_15870 chr3R + chr3R_6222543_6223088 chr3R_6222543_6223084 chr3R_6222454_6222542;chr3R_6223089_6223406 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 NA 100.00 100.00 100.00 95.24 100.00 100.00 100.00 98.77 100.00 100.00 100.00 95.45 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 96.61 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 K intron_retention CG13893,I_chr3L_600913_601954 chr3L - chr3L_600913_603370 chr3L_600912_600913;chr3L_603370_603371 chr3L_600843_600912;chr3L_603371_604001 0.00 0.00 0.00 0.00 0.00 4.44 0.00 3.64 1.72 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 3.12 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.11 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 2.38 1.39 0.00 0.00 2.13 0.00 2.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor vir-1,I_chr2L_12404178_12407208,RE_chr2L_12409622_12421640,I_chr2L_12421830_12423260 chr2L - chr2L_12421902_12423322;chr2L_12421830_12423322 chr2L_12421862_12423322 chr2L_12423323_12423328;chr2L_12421816_12421829 1.55 1.54 2.61 3.29 4.08 2.26 2.76 4.15 2.22 0.00 3.23 1.08 2.11 1.54 4.42 2.43 3.15 2.70 3.58 1.55 5.14 0.59 1.19 0.71 0.41 3.59 1.44 2.75 1.06 1.17 1.12 1.73 4.11 3.30 1.08 1.61 0.63 1.02 1.46 3.00 2.22 3.50 3.40 0.96 2.19 0.69 0.41 1.10 2.05 0.68 0.00 0.61 0.88 0.72 2.41 0.59 0.59 1.35 K intron_retention Su(var)3-9,I_chr3R_11088444_11088825 chr3R - chr3R_11087620_11088268 chr3R_11087619_11087620;chr3R_11088268_11088269 chr3R_11085623_11087619;chr3R_11088269_11088443 25.00 NA NA 43.75 NA NA NA NA NA NA NA 23.53 NA NA NA 33.33 NA NA NA 41.18 NA NA 14.29 NA NA NA 46.15 20.00 NA NA NA NA 0.00 NA NA 36.36 15.38 NA NA NA NA 54.55 NA NA NA NA NA NA NA NA 7.14 NA NA NA 25.00 NA NA NA K alternative_donor Adf1,CG15908_CG9410 chr2R + chr2R_2549942_2550073 chr2R_2549954_2550073 chr2R_2550074_2550262;chr2R_2549797_2549941 60.30 53.85 60.61 68.57 50.00 70.83 62.50 64.58 58.70 54.55 71.43 54.00 53.85 56.52 62.16 69.44 55.00 52.00 60.00 57.14 63.16 71.43 58.62 61.54 66.67 66.67 70.83 NA 73.33 50.00 66.67 41.18 50.00 58.00 57.14 70.59 54.17 56.00 61.54 57.14 69.23 59.62 60.00 59.09 73.33 75.00 61.90 47.06 59.02 55.56 60.71 71.43 62.50 52.94 67.74 62.96 54.55 77.27 K cassette 14-3-3zeta,I_chr2R_5993610_5993957,I_chr2R_5993331_5994971 chr2R + chr2R_5993331_5994971 chr2R_5993331_5994138;chr2R_5994303_5994971 chr2R_5994139_5994302 chr2R_5993231_5993330;chr2R_5994972_5995071 18.75 NA NA 18.75 NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA 2.44 NA NA NA NA NA NA NA NA NA NA NA 42.86 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor cdi chr3R - chr3R_14875792_14875867 chr3R_14875795_14875867 chr3R_14875868_14875953;chr3R_14875539_14875791 50.00 43.75 60.00 52.00 66.67 50.00 47.37 46.15 47.22 50.00 NA 59.09 50.00 NA 50.00 62.50 38.46 NA 46.15 64.00 63.64 59.09 62.86 47.37 50.00 45.45 51.85 43.75 50.00 55.00 53.85 NA 40.00 60.00 41.18 60.00 52.17 33.33 44.12 39.13 NA 39.29 63.64 52.63 NA 36.36 33.33 NA 60.00 NA 56.25 42.11 NA NA 62.50 41.67 36.36 NA K intron_retention Klp61F chr3L - chr3L_1241992_1242075 chr3L_1241991_1241992;chr3L_1242075_1242076 chr3L_1241568_1241991;chr3L_1242076_1242327 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 1.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 K jcn_only_AA CG8552,I_chr2L_8140779_8156516 chr2L - chr2L_8135615_8135673 chr2L_8135618_8135673 chr2L_8135674_8136092;chr2L_8134842_8135614 95.45 98.41 97.44 95.69 97.73 93.10 95.45 98.43 95.71 86.21 93.22 93.26 94.00 96.97 93.55 93.07 96.43 100.00 95.56 97.06 92.98 94.05 100.00 95.59 92.59 95.83 93.42 100.00 100.00 96.39 98.73 95.65 100.00 96.15 92.06 93.94 100.00 95.45 90.38 96.38 92.79 95.17 95.16 95.00 95.45 93.39 93.15 95.42 96.30 94.12 96.30 100.00 94.37 94.12 97.26 88.14 95.18 93.90 K intron_retention ct chrX + chrX_7557588_7564923 chrX_7557587_7557588;chrX_7564923_7564924 chrX_7556679_7557587;chrX_7564924_7565341 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor RPA2,RI_chr2L_20925851_20925909 chr2L - chr2L_20925824_20925913 chr2L_20925851_20925913 chr2L_20925914_20925975;chr2L_20925751_20925823 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 76.69 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG11148,I_chr4_886499_886547,RI_chr4_886921_887162 chr4 - chr4_886499_886556 chr4_886498_886499;chr4_886556_886557 chr4_886399_886498;chr4_886557_886647 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.51 0.00 0.00 1.92 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Fer1HCH,I_chr3R_26212319_26213496,I_chr3R_26213132_26213185 chr3R - chr3R_26213273_26213496;chr3R_26213325_26213496 chr3R_26213365_26213496 chr3R_26213497_26213534;chr3R_26213186_26213272 0.98 1.02 0.59 1.17 0.52 1.07 1.78 1.73 0.46 1.39 0.92 1.54 0.98 0.94 1.17 1.20 0.48 1.49 1.44 0.82 0.49 0.97 1.38 1.01 2.26 1.32 0.75 0.68 0.34 0.77 1.75 0.35 1.08 1.63 1.86 0.71 0.94 0.84 1.42 0.98 1.50 0.88 0.95 1.00 1.39 0.99 0.52 2.22 1.83 0.93 0.56 0.99 0.64 0.44 0.98 0.17 0.48 1.19 K intron_retention TER94 chr2R + chr2R_5876809_5877975 chr2R_5876808_5876809;chr2R_5877975_5877976 chr2R_5876652_5876808;chr2R_5877976_5878078 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.29 0.93 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon BEAF-32,I_chr2R_10658570_10659304,noncoding_6875 chr2R + chr2R_10658570_10659304 chr2R_10658570_10658826 chr2R_10659305_10660149 chr2R_10658827_10659147 chr2R_10658497_10658569 92.86 94.12 96.43 93.33 91.67 92.86 80.00 94.44 86.67 71.43 93.33 94.44 87.50 90.48 92.31 80.00 90.91 93.75 93.75 96.00 92.86 84.62 92.31 94.44 94.74 95.24 92.00 80.00 94.44 92.31 75.00 95.00 90.00 90.48 94.74 90.91 96.67 96.67 96.30 96.88 88.89 90.00 96.00 87.50 94.12 96.88 88.89 88.89 97.22 91.67 91.67 93.75 96.00 95.24 90.91 78.57 83.33 97.50 K alternative_acceptor sra,RI_chr3R_12013022_12018544 chr3R + chr3R_12013022_12021756 chr3R_12013022_12021752 chr3R_12012922_12013021;chr3R_12021757_12023310 97.67 95.65 97.73 95.00 97.50 100.00 98.11 95.08 97.75 100.00 98.04 98.36 97.30 97.06 88.57 97.30 97.30 94.44 97.44 96.74 100.00 98.77 98.44 96.36 100.00 100.00 97.67 98.36 98.36 98.51 100.00 97.37 99.02 94.87 97.50 100.00 96.91 95.00 98.41 98.72 98.39 95.18 96.15 100.00 98.59 96.72 97.50 97.01 93.94 98.00 96.08 97.73 96.15 91.67 97.14 98.11 98.15 98.18 K alternative_acceptor foi,I_chr3L_8520658_8520733,I_chr3L_8524905_8524976 chr3L + chr3L_8520658_8523659 chr3L_8520658_8520733 chr3L_8520558_8520657;chr3L_8523660_8524249 100.00 100.00 100.00 50.00 100.00 100.00 100.00 75.00 80.00 50.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 83.33 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 100.00 100.00 100.00 75.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 50.00 100.00 75.00 100.00 75.00 75.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG5871,NELF-A chr3R + chr3R_17046990_17047047 chr3R_17046989_17046990;chr3R_17047047_17047048 chr3R_17046895_17046989;chr3R_17047048_17047472 0.00 0.00 0.00 5.77 10.00 4.76 2.86 0.00 0.00 NA 0.00 0.00 0.00 0.00 4.00 18.92 0.00 0.00 0.00 0.00 0.00 8.33 4.00 0.00 0.00 0.00 12.50 7.69 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 3.23 0.00 3.85 0.00 3.33 0.00 2.33 0.00 0.00 0.00 0.00 2.38 5.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11009 chr3L + chr3L_12843432_12843597 chr3L_12843431_12843432;chr3L_12843597_12843598 chr3L_12843289_12843431;chr3L_12843598_12843897 0.00 0.00 0.00 0.49 0.00 0.00 0.47 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 0.00 1.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG31999,I_chr4_238453_238873,I_chr4_238809_238873,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_238121_238873;chr4_238453_238873 chr4_238809_238873 chr4_238874_238973;chr4_238032_238120 1.73 5.00 1.45 4.59 0.00 1.85 2.27 1.45 1.04 0.00 3.70 1.08 6.67 1.04 2.47 0.72 0.00 0.00 1.63 3.42 0.00 2.13 0.00 3.70 4.17 0.00 5.13 NA 6.25 0.00 0.58 5.26 3.85 1.16 2.94 0.00 5.26 4.00 0.00 2.70 0.00 1.63 0.00 4.44 0.00 0.00 1.43 0.00 1.83 3.51 11.43 3.03 0.00 1.82 1.44 6.90 2.20 1.96 K cassette sli,RI_chr2R_11794739_11809143 chr2R - chr2R_11772994_11773603 chr2R_11772994_11773089;chr2R_11773162_11773603 chr2R_11773090_11773161 chr2R_11772856_11772993;chr2R_11773604_11773675 91.30 96.55 82.93 91.67 87.50 78.79 65.45 98.63 88.04 87.50 91.30 95.08 100.00 85.11 83.67 93.55 94.74 86.21 92.86 93.42 96.15 96.67 91.67 88.57 92.31 83.78 89.19 93.33 80.00 82.14 88.57 100.00 93.75 89.86 96.30 88.89 80.77 96.00 97.22 91.49 90.00 91.36 89.19 86.96 90.00 92.86 93.75 93.75 90.67 94.12 87.23 80.56 93.33 81.82 90.70 100.00 91.67 88.00 K alternative_acceptor Mnn1 chr2L + chr2L_7057157_7057347 chr2L_7057157_7057223 chr2L_7056561_7057156;chr2L_7057348_7057674 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA K alternative_donor lok,RI_chr2L_20063248_20063377 chr2L + chr2L_20062013_20062147 chr2L_20062064_20062147 chr2L_20062148_20062305;chr2L_20061782_20062012 38.89 40.00 30.56 53.12 33.33 31.03 45.83 27.54 42.37 36.36 41.18 48.00 57.14 43.33 48.48 32.14 47.37 40.74 45.45 34.67 34.48 38.24 24.32 45.95 32.00 51.61 40.62 50.00 25.00 25.00 25.00 33.33 31.58 31.15 38.89 19.61 47.83 37.04 40.62 19.61 46.94 36.23 53.57 47.37 44.00 40.74 38.71 39.02 36.00 25.00 34.78 52.00 20.00 26.09 42.22 42.86 44.44 28.57 N jcn_only_AA EF_chr2R_8548702_8595112,nemy chr2R - chr2R_8561434_8563629;chr2R_8563548_8563629;chr2R_8561431_8563629 chr2R_8560845_8563629 chr2R_8563630_8563736 100.00 99.07 98.36 100.00 100.00 100.00 100.00 99.29 99.50 98.33 100.00 99.40 100.00 100.00 100.00 100.00 100.00 99.01 100.00 93.41 100.00 98.96 98.92 99.21 100.00 100.00 98.45 100.00 97.22 100.00 89.39 100.00 100.00 98.53 100.00 100.00 100.00 97.76 99.39 100.00 100.00 100.00 100.00 100.00 100.00 98.06 98.53 100.00 98.31 100.00 99.52 98.92 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG17883,I_chr2R_560547_560618 chr2R + chr2R_560729_560784 chr2R_560729_560781 chr2R_560619_560728;chr2R_560785_561111 100.00 NA 100.00 NA NA NA 95.38 98.04 98.18 NA 95.00 100.00 97.50 100.00 NA 97.78 96.30 NA 94.44 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 96.30 NA NA 100.00 NA NA 98.36 NA NA NA NA NA 100.00 NA 100.00 100.00 K intron_retention CG17734,I_chr3R_7068286_7069503 chr3R - chr3R_7068286_7068545 chr3R_7068285_7068286;chr3R_7068545_7068546 chr3R_7068186_7068285;chr3R_7068546_7068735 4.05 4.00 2.94 11.81 4.82 5.43 17.21 3.16 4.02 2.04 3.23 3.17 5.56 2.50 1.77 4.23 3.30 4.60 6.00 4.39 2.63 5.88 6.38 3.03 7.89 4.76 8.70 10.98 8.08 3.92 2.56 0.83 1.96 3.64 5.49 12.99 2.82 1.54 3.36 5.11 6.13 3.86 4.05 0.76 4.26 4.37 4.27 1.83 3.72 3.05 6.87 0.00 5.26 5.51 4.32 1.71 4.49 1.76 N jcn_only_AD Not1,I_chr2R_5463624_5463682 chr2R - chr2R_5455592_5456522;chr2R_5455592_5456067 chr2R_5455592_5455673 chr2R_5455002_5455591;chr2R_5456523_5457661 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.49 0.00 0.00 0.00 0.00 0.00 0.00 3.29 3.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor I_chr3L_3151185_3151263,CG32280 chr3L + chr3L_3165255_3167941;chr3L_3165352_3167941;chr3L_3165390_3167941;chr3L_3165704_3167941;chr3L_3165407_3167941 chr3L_3165222_3167941 chr3L_3167942_3168265;chr3L_3165212_3165221 33.33 NA NA 25.00 NA NA 33.33 NA 25.00 75.00 NA 33.33 NA NA NA 25.00 NA 0.00 NA NA NA 66.67 57.14 NA NA NA NA NA 25.00 NA NA NA 50.00 NA NA NA 57.14 NA NA 33.33 NA NA NA NA 33.33 0.00 33.33 50.00 0.00 42.86 50.00 NA NA NA NA NA 57.14 0.00 K intron_retention Pax,RI_chr2L_19401373_19401448,I_chr2L_19401373_19401523,RI_chr2L_19401373_19409403,snmRNA:359,I_chr2L_19404678_19404749,RI_chr2L_19404683_19426205,RI_chr2L_19404823_19409403 chr2L - chr2L_19401373_19403998 chr2L_19401372_19401373;chr2L_19403998_19403999 chr2L_19401273_19401372;chr2L_19403999_19404682 8.98 8.65 11.38 3.30 13.83 10.34 12.10 8.92 13.23 8.86 26.83 11.01 24.24 17.53 10.09 15.45 14.29 12.20 18.18 5.45 10.53 13.70 7.41 6.63 4.79 5.41 8.98 11.32 4.23 8.39 13.39 3.45 12.31 13.37 8.09 8.43 9.60 6.47 6.49 8.71 2.08 10.78 17.05 9.16 3.57 4.31 2.80 10.27 12.17 3.95 7.54 11.54 3.21 3.54 15.08 4.02 3.68 3.30 K jcn_only_AD CG17002 chr2R + chr2R_2874439_2875142 chr2R_2874454_2875142 chr2R_2875143_2875164;chr2R_2874339_2874438 3.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2.63 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention ergic53 chr3L + chr3L_8528287_8528473 chr3L_8528286_8528287;chr3L_8528473_8528474 chr3L_8527971_8528286;chr3L_8528474_8529192 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 1.31 0.00 0.64 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.17 0.00 0.00 0.81 1.01 0.00 0.23 0.54 0.00 0.00 0.00 0.00 0.00 0.81 0.00 1.03 0.49 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA shep,RI_chr3L_5163541_5194164,I_chr3L_5177084_5177314,I_chr3L_5193467_5212049 chr3L - chr3L_5155644_5156066;chr3L_5155711_5156066 chr3L_5155732_5156066 chr3L_5156067_5156229;chr3L_5155556_5155643 5.06 4.35 4.96 13.24 6.06 5.68 5.82 4.90 6.25 5.33 3.77 4.75 8.92 4.98 4.17 5.06 6.50 5.50 6.46 5.42 4.57 4.30 6.96 7.78 7.39 8.19 2.69 2.13 6.36 6.43 4.51 5.62 4.21 7.80 5.11 8.22 5.70 4.00 3.35 3.49 8.07 4.59 3.43 2.33 4.92 3.96 4.00 4.92 5.25 7.08 6.61 4.65 4.44 1.85 4.76 5.59 8.00 3.47 K intron_retention cbs,I_chr2R_9340512_9340593 chr2R + chr2R_9338504_9338594 chr2R_9338503_9338504;chr2R_9338594_9338595 chr2R_9338008_9338503;chr2R_9338595_9339380 0.00 0.00 0.00 4.55 0.00 0.00 5.66 6.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 2.68 0.00 8.20 0.00 1.64 0.00 0.00 0.00 0.00 2.20 0.00 0.00 0.00 0.00 0.00 2.38 0.00 1.67 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 2.44 2.00 2.74 0.00 1.59 0.00 0.00 0.00 1.72 0.00 0.00 0.00 K intron_retention CG14478 chr2R + chr2R_13349991_13350055 chr2R_13349990_13349991;chr2R_13350055_13350056 chr2R_13349499_13349990;chr2R_13350056_13352421 95.24 93.33 100.00 96.55 92.86 100.00 93.10 97.30 94.34 93.75 85.71 92.86 95.65 88.89 100.00 96.77 100.00 87.50 94.12 94.29 100.00 85.19 97.06 95.83 95.00 100.00 100.00 100.00 100.00 86.67 100.00 90.91 100.00 100.00 95.24 93.75 96.15 93.33 96.30 96.97 95.24 97.87 85.00 95.65 93.75 95.65 93.75 97.44 97.14 86.21 87.10 94.44 87.50 NA 94.44 100.00 83.33 85.71 K intron_retention Ptp10D,CEF_chrX_11516219_11517862,I_chrX_11516225_11516345 chrX + chrX_11567495_11567763 chrX_11567494_11567495;chrX_11567763_11567764 chrX_11567366_11567494;chrX_11567764_11567993 6.58 3.03 2.94 6.12 0.00 6.67 20.83 16.67 8.70 16.00 0.00 10.00 7.69 12.50 13.16 3.70 3.57 12.90 5.00 8.00 8.33 12.31 6.12 3.23 13.64 6.67 0.00 NA 0.00 5.00 8.89 17.65 6.49 4.44 6.67 0.00 5.08 0.00 5.63 8.89 0.00 8.47 0.00 8.33 5.26 10.53 5.88 11.63 7.14 8.33 9.09 14.29 8.00 0.00 6.06 0.00 0.00 0.00 K intron_retention CG17273,I_chr3R_16652066_16655997,REI_chr3R_16652421_16653701 chr3R - chr3R_16651716_16651785 chr3R_16651715_16651716;chr3R_16651785_16651786 chr3R_16651355_16651715;chr3R_16651786_16652065 2.91 1.10 2.73 5.83 2.05 2.41 4.72 1.69 3.00 2.03 2.50 2.65 2.03 2.08 2.09 1.83 2.33 3.94 3.05 2.75 1.47 4.90 3.26 2.65 5.86 3.62 3.26 3.63 4.74 2.33 6.67 3.29 4.85 2.48 3.64 3.44 3.74 3.60 2.97 2.91 8.74 2.44 1.74 2.91 3.04 3.13 2.29 3.27 2.24 2.81 3.39 3.60 1.02 1.09 3.02 1.82 0.85 3.06 K intron_retention CG1681 chrX + chrX_13302825_13302895 chrX_13302824_13302825;chrX_13302895_13302896 chrX_13302689_13302824;chrX_13302896_13303422 1.14 0.39 0.54 0.00 1.89 1.30 1.05 1.21 1.24 0.82 0.00 0.85 1.75 2.86 1.23 2.58 0.00 0.00 1.57 0.30 0.00 3.78 0.91 0.67 0.50 1.41 2.73 3.55 16.60 0.00 0.68 0.00 3.09 0.54 0.00 0.00 1.42 0.77 0.54 1.57 4.38 1.88 0.99 1.29 2.13 1.98 1.62 1.83 1.14 1.39 1.07 0.00 0.59 0.00 1.35 1.10 2.13 2.16 K jcn_only_AA e(y)3,I_chrX_19530503_19530884,I_chrX_19530503_19531405 chrX - chrX_19530473_19531650 chrX_19530503_19531650 chrX_19531651_19532371;chrX_19530403_19530472 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.87 100.00 98.51 100.00 100.00 100.00 100.00 100.00 96.77 94.87 100.00 96.77 97.83 100.00 95.83 100.00 100.00 100.00 NA 100.00 100.00 97.50 NA 100.00 100.00 97.06 97.37 98.73 92.31 100.00 98.04 NA 95.77 100.00 97.06 NA 100.00 NA 97.50 98.53 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 K intron_retention Act42A,dream chr2R - chr2R_1902928_1903081 chr2R_1902927_1902928;chr2R_1903081_1903082 chr2R_1901407_1902927;chr2R_1903082_1903223 0.28 0.35 0.18 0.21 0.30 0.32 0.22 0.18 0.23 0.00 0.00 0.41 0.58 0.28 0.28 0.14 0.13 0.29 0.21 0.16 0.16 0.19 0.41 0.22 0.46 0.32 3.06 1.84 0.35 0.21 0.07 0.22 0.16 0.08 0.49 0.86 0.19 0.36 0.92 0.27 0.46 0.25 0.29 0.29 0.29 0.37 0.95 0.25 0.19 1.09 1.15 0.00 1.41 1.92 0.24 1.06 0.69 0.08 K intron_retention CtBP chr3R + chr3R_8837575_8845063 chr3R_8837574_8837575;chr3R_8845063_8845064 chr3R_8837487_8837574;chr3R_8845064_8845536 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.51 100.00 100.00 NA NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 K alternative_last_exon CG6928 chr3L + chr3L_12000501_12000715 chr3L_12000501_12000593 chr3L_12000716_12001162 chr3L_12000594_12000662 chr3L_12000321_12000500 0.00 0.00 0.00 9.09 0.00 0.00 4.76 8.33 0.00 0.00 0.00 5.56 0.00 0.00 0.00 5.00 12.50 0.00 9.09 0.00 0.00 7.69 0.00 0.00 0.00 11.11 0.00 13.33 23.08 0.00 10.00 12.50 0.00 0.00 10.00 0.00 0.00 14.29 0.00 6.25 0.00 15.79 14.29 0.00 20.00 0.00 10.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 K intron_retention CG12702,I_chrX_19654440_19654520 chrX - chrX_19653698_19653764 chrX_19653697_19653698;chrX_19653764_19653765 chrX_19653197_19653697;chrX_19653765_19653999 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 4.76 11.11 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 K jcn_only_AD lid,I_chr2L_5996532_5997682,I_chr2L_5996532_5998072,I_chr2L_5996532_5999224 chr2L - chr2L_5996532_5999409 chr2L_5996532_5999297 chr2L_5996432_5996531;chr2L_5999410_5999478 96.72 100.00 100.00 98.18 95.24 96.15 98.31 92.54 92.86 96.77 100.00 96.15 96.77 98.18 98.08 93.06 92.31 93.33 98.15 98.44 96.55 88.57 92.16 96.43 100.00 96.30 98.15 100.00 NA 96.67 94.23 NA 91.18 100.00 92.31 97.37 95.12 97.50 100.00 100.00 NA 100.00 97.44 96.67 NA NA NA 100.00 100.00 NA 89.58 86.96 NA NA 96.23 95.00 NA NA K alternative_donor CG8323,CG18327 chr2R + chr2R_10053147_10053647 chr2R_10053230_10053647 chr2R_10053648_10054496;chr2R_10053094_10053146 96.30 92.86 100.00 83.33 88.89 100.00 94.44 92.86 94.74 100.00 100.00 96.00 100.00 90.00 100.00 93.75 100.00 100.00 90.91 93.55 100.00 100.00 94.12 100.00 100.00 100.00 93.75 91.67 100.00 100.00 93.33 95.24 92.59 95.24 100.00 100.00 95.45 92.86 89.47 97.06 100.00 96.30 100.00 100.00 96.55 91.89 100.00 96.30 95.45 100.00 100.00 93.75 94.12 100.00 92.86 94.12 100.00 97.06 K intron_retention CG1792,pasha chr3R + chr3R_27442995_27443070 chr3R_27442994_27442995;chr3R_27443070_27443071 chr3R_27442297_27442994;chr3R_27443071_27443181 14.81 21.05 13.64 16.13 20.00 NA 11.76 16.13 14.81 NA NA 20.00 NA NA 5.56 19.05 21.43 14.29 14.29 20.00 NA 21.05 10.53 19.05 NA 20.00 14.29 33.33 NA 0.00 17.65 6.67 0.00 12.50 NA 20.00 12.90 20.00 4.88 15.15 NA 13.33 NA NA 12.50 14.29 4.35 31.25 15.15 15.00 13.33 NA NA 4.00 17.65 19.05 11.54 12.50 K alternative_donor Csk,I_chr3R_7463337_7463512,I_chr3R_7468917_7472437,I_chr3R_7468917_7472509,I_chr3R_7468928_7472509 chr3R - chr3R_7468928_7472509 chr3R_7468928_7472437 chr3R_7468892_7468927;chr3R_7472510_7472537 63.16 66.67 NA 66.67 NA 54.55 75.00 72.73 54.29 NA 44.44 55.00 62.50 55.56 71.43 63.16 NA NA 75.00 60.00 NA NA 64.29 87.50 60.00 62.50 72.22 NA NA NA 75.00 NA 62.50 58.33 36.36 66.67 36.36 NA NA 50.00 NA 63.16 87.50 NA NA NA NA 66.67 71.43 NA 41.67 63.64 NA NA 69.23 NA NA NA K intron_retention E_chr3L_17612784_17614501,CG6259 chr3L - chr3L_17613995_17614200 chr3L_17613994_17613995;chr3L_17614200_17614201 chr3L_17613829_17613994;chr3L_17614201_17614352 0.65 0.00 0.00 1.05 0.00 0.00 0.65 1.24 1.41 1.56 0.00 1.37 0.00 0.95 0.72 2.14 0.00 0.00 0.00 1.12 0.87 3.33 0.00 1.31 0.00 1.61 1.52 0.91 0.00 1.22 0.00 0.00 0.00 0.00 2.94 0.00 0.65 0.00 0.70 2.61 0.00 1.00 0.00 1.72 1.45 0.00 0.00 1.08 1.84 0.00 2.05 1.27 1.10 0.00 0.00 0.00 0.00 0.00 K intron_retention lap,I_chr3R_3017854_3019314 chr3R + chr3R_3016519_3016853 chr3R_3016518_3016519;chr3R_3016853_3016854 chr3R_3016443_3016518;chr3R_3016854_3016886 0.00 0.00 0.00 0.00 5.00 0.00 8.33 5.00 12.24 NA 6.67 9.30 NA 0.00 0.00 7.69 4.35 0.00 0.00 8.00 0.00 NA 0.00 0.00 NA 5.56 7.14 NA NA NA 10.00 NA NA 4.65 NA NA 0.00 NA 0.00 0.00 NA 5.26 0.00 0.00 NA 0.00 0.00 NA 7.32 0.00 0.00 0.00 NA NA 0.00 NA NA NA K alternative_donor dj-1beta,I_chr3R_26643930_26646602 chr3R + chr3R_26633376_26633455 chr3R_26633390_26633455 chr3R_26633456_26633524;chr3R_26633310_26633375 100.00 100.00 100.00 99.23 100.00 100.00 100.00 99.15 99.44 100.00 100.00 99.42 100.00 100.00 100.00 98.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.34 100.00 100.00 99.19 100.00 100.00 100.00 100.00 98.96 100.00 100.00 100.00 99.28 99.35 100.00 100.00 99.57 100.00 99.47 98.72 100.00 100.00 99.56 99.49 100.00 100.00 99.29 100.00 100.00 99.53 100.00 99.12 100.00 98.99 100.00 K intron_retention CG7971,I_chr3L_1659363_1659845,I_chr3L_1667736_1667806 chr3L - chr3L_1655021_1656921 chr3L_1655020_1655021;chr3L_1656921_1656922 chr3L_1654879_1655020;chr3L_1656922_1658464 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette Zasp52,I_chr2R_11661472_11663280,F_chr2R_11662587_11662811,I_chr2R_11690993_11701987 chr2R - chr2R_11661472_11664682 chr2R_11661472_11661932;chr2R_11663013_11664682 chr2R_11661933_11663012 chr2R_11661372_11661471;chr2R_11664683_11664791 99.47 100.00 100.00 100.00 100.00 100.00 99.32 99.32 100.00 98.86 100.00 100.00 98.28 98.77 100.00 98.95 98.78 100.00 98.81 99.65 100.00 91.95 99.59 99.47 99.26 100.00 99.39 100.00 99.32 100.00 99.10 99.03 100.00 100.00 99.19 100.00 99.68 98.68 100.00 99.61 98.95 99.15 100.00 99.47 99.36 99.37 99.36 99.42 100.00 99.21 99.48 100.00 98.98 98.17 99.06 100.00 99.36 100.00 K jcn_only_AD Imp,I_chrX_10699490_10700695,RI_chrX_10699665_10700501,RI_chrX_10699665_10700695 chrX - chrX_10699503_10700501;chrX_10699503_10700695 chrX_10699503_10700474 chrX_10699299_10699502;chrX_10700696_10700795 8.93 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.52 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG1317 chr3L - chr3L_2368426_2368629 chr3L_2368426_2368620 chr3L_2368013_2368425;chr3L_2368630_2370048 2.42 0.00 2.70 3.03 0.00 3.12 0.00 4.41 0.00 2.38 2.27 7.32 2.86 0.00 3.92 2.50 6.45 0.00 3.77 3.85 0.00 9.84 4.26 1.67 NA 0.00 1.67 0.00 2.30 0.00 1.75 3.28 3.03 2.53 5.00 NA 3.23 0.00 4.69 1.23 1.65 3.85 3.23 1.10 5.77 0.85 0.00 3.06 2.15 1.64 9.09 2.56 3.03 4.76 1.82 1.35 1.45 2.42 K intron_retention CG32666 chrX + chrX_11446974_11447060 chrX_11446973_11446974;chrX_11447060_11447061 chrX_11445805_11446973;chrX_11447061_11448906 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention dnc,I_chrX_3150245_3150319,I_chrX_3150351_3152643 chrX + chrX_3232850_3233002 chrX_3232849_3232850;chrX_3233002_3233003 chrX_3232481_3232849;chrX_3233003_3233260 0.00 0.00 0.00 10.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.33 NA 0.00 0.00 NA 0.00 0.00 0.00 3.85 7.14 11.11 0.00 0.00 NA NA 0.00 NA 15.38 0.00 NA 0.00 NA 7.14 0.00 10.00 0.00 0.00 3.45 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 5.26 0.00 3.03 0.00 0.00 0.00 6.25 0.00 0.00 NA N cassette Nhe2,I_chr2L_21122390_21122912 chr2L + chr2L_21128063_21131230;chr2L_21128063_21132033 chr2L_21128063_21128778;chr2L_21129083_21132033,chr2L_21129083_21131230 chr2L_21128779_21129082 chr2L_21127850_21128062;chr2L_21132034_21132685 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 97.50 96.43 100.00 100.00 100.00 98.68 100.00 89.77 100.00 98.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 100.00 97.22 98.57 100.00 100.00 100.00 95.83 100.00 100.00 100.00 98.44 97.67 100.00 97.73 100.00 98.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor D1,RI_chr3R_5065631_5065691,I_chr3R_5065631_5065695,I_chr3R_5065631_5065697 chr3R - chr3R_5065631_5065767;chr3R_5065631_5065697;chr3R_5065631_5065691 chr3R_5065631_5065695 chr3R_5065531_5065630;chr3R_5065768_5065790 24.07 14.63 19.23 19.12 27.50 34.55 29.31 27.27 17.72 39.13 20.69 22.22 17.78 28.57 24.07 36.28 22.22 23.81 26.79 19.51 10.00 10.34 22.73 10.53 30.77 21.05 17.24 25.00 25.00 18.75 29.69 33.87 26.44 25.61 11.63 27.03 25.93 30.43 15.15 32.41 19.35 33.33 35.71 27.27 19.75 14.95 20.00 25.86 19.47 34.29 28.57 26.92 39.53 23.81 16.90 13.04 16.22 32.17 K alternative_acceptor vsg,I_chr3L_9707724_9708265 chr3L + chr3L_9707724_9708846 chr3L_9707724_9708843 chr3L_9707624_9707723;chr3L_9708847_9710788 25.20 24.55 23.91 23.27 22.85 24.28 21.82 22.92 25.23 27.13 23.29 24.61 23.45 26.48 23.86 25.46 24.37 24.10 26.75 24.17 25.00 25.24 27.81 26.79 22.82 23.39 26.72 26.45 26.37 24.47 25.77 25.66 27.02 23.39 27.03 23.56 27.68 27.11 27.21 23.21 26.87 24.53 23.22 25.66 26.74 25.33 23.72 24.41 24.04 25.41 26.62 23.48 25.79 26.51 25.20 27.23 23.50 27.45 K intron_retention CtBP chr3R + chr3R_8844861_8845063 chr3R_8844860_8844861;chr3R_8845063_8845064 chr3R_8844757_8844860;chr3R_8845064_8845536 90.00 NA NA 86.96 88.89 90.00 96.77 84.00 88.89 NA 83.33 95.83 100.00 88.89 84.62 90.48 90.00 70.00 93.33 93.33 NA 88.89 NA 88.89 NA 100.00 NA 90.00 NA NA 83.33 NA NA 94.12 NA 90.00 NA NA NA 90.00 NA 90.00 90.91 NA NA NA NA NA 95.65 87.50 NA NA NA NA 92.31 NA NA NA K intron_retention CG3635,I_chr2L_22179420_22179486 chr2L + chr2L_22179567_22179631 chr2L_22179566_22179567;chr2L_22179631_22179632 chr2L_22179487_22179566;chr2L_22179632_22180010 9.68 3.85 11.11 25.00 5.56 7.69 17.02 14.29 7.14 NA 5.41 15.62 NA 6.67 15.15 31.03 10.53 15.00 17.14 8.33 7.14 0.00 4.44 8.57 NA 13.79 4.76 28.57 NA 20.00 4.88 NA NA 15.38 2.94 0.00 0.00 3.45 8.33 0.00 15.38 15.69 23.08 10.53 NA 9.68 22.22 NA 21.74 7.32 5.56 14.29 NA 11.76 21.43 0.00 8.82 NA K intron_retention Eps-15,I_chr2R_20660319_20660496,CRE_chr2R_20660823_20660880 chr2R - chr2R_20660527_20660734 chr2R_20660526_20660527;chr2R_20660734_20660735 chr2R_20660497_20660526;chr2R_20660735_20660822 1.98 2.82 4.35 1.23 0.00 5.26 7.14 1.25 3.33 2.44 0.00 2.73 0.00 0.00 1.59 2.78 0.00 4.55 0.00 3.07 0.00 3.57 3.36 1.64 0.00 0.00 3.49 4.00 6.38 0.00 6.52 2.47 0.00 3.09 1.61 8.00 1.50 0.00 0.00 4.55 0.00 4.10 0.00 1.33 3.57 2.11 1.54 2.35 3.67 1.79 1.98 3.17 0.00 1.64 0.00 2.38 0.00 3.75 K intron_retention CG6540 chrX + chrX_18542490_18542548 chrX_18542489_18542490;chrX_18542548_18542549 chrX_18542209_18542489;chrX_18542549_18543568 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.50 1.39 0.00 0.00 0.00 0.00 7.41 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 1.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG8232 chr2R + chr2R_4818153_4818214 chr2R_4818156_4818214 chr2R_4818215_4818510;chr2R_4818096_4818152 92.86 88.89 90.00 94.29 86.67 90.00 96.00 97.22 89.19 88.89 100.00 96.55 90.00 100.00 93.75 96.15 95.24 94.12 87.50 91.18 91.67 88.89 92.00 100.00 92.31 90.00 80.00 NA 100.00 100.00 94.74 90.00 94.44 96.77 100.00 92.86 87.50 93.33 92.86 87.50 90.91 89.47 85.71 95.00 90.00 82.35 92.86 93.33 97.30 92.86 94.12 93.75 93.33 86.67 90.32 85.71 92.86 91.67 K alternative_acceptor CG14133 chr3L - chr3L_11683209_11683325;chr3L_11683239_11683325 chr3L_11683229_11683325 chr3L_11683326_11683412;chr3L_11682731_11683208 23.53 15.38 26.67 44.44 23.08 25.00 13.33 13.33 36.59 NA 31.25 35.29 10.00 10.00 45.45 12.50 16.67 22.22 18.18 42.42 27.78 NA 20.00 NA NA 37.50 NA NA NA 23.08 26.32 20.00 37.50 22.73 NA NA 23.53 27.27 40.00 20.00 NA 38.89 28.57 22.22 30.77 18.75 15.38 25.00 31.82 25.00 31.25 NA 18.75 33.33 23.53 20.00 16.67 11.54 K intron_retention CG8675,Fim chrX - chrX_17180910_17180969 chrX_17180909_17180910;chrX_17180969_17180970 chrX_17179736_17180909;chrX_17180970_17181223 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.87 0.00 0.00 0.41 0.00 0.45 0.34 1.50 0.00 0.00 0.00 0.00 0.00 0.66 0.41 0.25 0.00 0.00 1.96 4.17 3.30 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.17 0.29 0.00 0.56 0.00 0.36 0.00 0.41 0.00 1.54 0.46 0.00 0.73 0.00 0.51 0.00 0.00 0.00 0.00 2.19 K alternative_donor CG31038,I_chr3R_25702915_25703648,I_chr3R_25705533_25722419,I_chr3R_25727788_25727905 chr3R + chr3R_25702915_25703648;chr3R_25702989_25703648;chr3R_25702895_25703648;chr3R_25702897_25703648;chr3R_25702838_25703648;chr3R_25702970_25703648 chr3R_25702901_25703648 chr3R_25703649_25703748;chr3R_25702831_25702837 36.36 42.86 18.18 16.67 NA 25.00 11.11 33.33 50.00 33.33 NA 44.44 40.00 14.29 14.29 46.15 NA 0.00 33.33 41.38 0.00 42.11 50.00 53.85 45.45 28.57 40.00 28.57 10.00 25.00 43.75 0.00 46.15 30.77 62.50 54.55 26.67 55.56 50.00 33.33 0.00 26.67 NA 36.36 33.33 50.00 50.00 25.00 30.77 33.33 45.45 44.44 40.00 42.86 22.22 44.44 50.00 50.00 K cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27707594_27784756;chr3R_27747397_27784756;chr3R_27707594_27759175 chr3R_27747397_27757793,chr3R_27707594_27757793;chr3R_27758337_27784756,chr3R_27758337_27759175 chr3R_27757794_27758336 chr3R_27707494_27707593;chr3R_27784757_27784846 17.65 29.41 22.22 22.22 6.25 17.65 21.43 5.00 14.04 25.00 8.00 21.82 4.35 9.38 7.89 7.69 NA 3.45 7.41 21.82 9.09 17.65 18.75 21.88 19.05 13.04 18.18 33.33 40.91 13.79 18.18 25.00 17.24 17.50 31.82 26.09 29.03 22.73 28.57 18.60 15.38 12.50 10.53 10.81 53.33 22.73 14.29 21.43 14.89 12.50 23.08 11.11 23.81 16.67 10.34 12.50 15.00 21.88 K alternative_donor glo,I_chr3R_7644679_7644739,REI_chr3R_7644679_7644932,RI_chr3R_7644683_7644880,I_chr3R_7647556_7647628 chr3R - chr3R_7644683_7644880;chr3R_7644683_7644932;chr3R_7644683_7644739;chr3R_7644683_7644743 chr3R_7644683_7644908 chr3R_7644583_7644682;chr3R_7644933_7644980 1.83 0.00 1.64 1.85 4.35 0.00 1.19 0.00 0.94 0.00 0.00 0.89 2.08 1.85 3.08 2.36 0.00 NA 1.61 1.98 0.00 3.68 3.48 1.92 1.96 2.17 1.98 1.15 5.77 1.89 2.47 1.22 4.55 4.76 1.61 2.53 1.69 0.00 1.54 0.77 1.82 2.68 2.50 1.03 3.64 0.00 1.64 0.85 4.48 0.00 2.74 0.00 2.38 0.00 2.38 3.53 3.30 1.67 K alternative_acceptor CG4294 chr2R - chr2R_18488870_18489034 chr2R_18488876_18489034 chr2R_18489035_18489320;chr2R_18488842_18488869 93.75 NA NA 100.00 NA NA 87.50 NA 87.50 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG5585,I_chr3L_20339275_20339338,I_chr3L_20340649_20340712 chr3L - chr3L_20339275_20339343 chr3L_20339275_20339338 chr3L_20339175_20339274;chr3L_20339344_20339438 0.00 0.00 5.56 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 1.92 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.23 0.00 0.00 0.00 0.00 0.00 K intron_retention CG12581,I_chr3R_488_577,I_chr3R_519_577,I_chr3R_9380_9438 chr3R + chr3R_510_577 chr3R_509_510;chr3R_577_578 chr3R_419_509;chr3R_578_677 75.00 80.95 73.08 80.00 75.00 69.23 64.00 86.21 83.33 66.67 NA 78.05 75.00 81.25 89.47 70.59 91.67 47.62 78.95 72.50 75.00 78.57 80.95 76.47 90.91 76.47 77.27 90.91 88.89 73.33 71.43 80.00 66.67 75.86 66.67 88.89 73.68 76.47 87.50 68.42 71.43 79.41 73.33 66.67 52.94 78.26 73.33 67.39 70.73 66.67 57.69 76.47 63.64 50.00 89.47 91.67 63.64 55.00 K alternative_donor CG1640,RI_chrX_13265127_13267895,I_chrX_13265553_13267895,I_chrX_13265618_13267895,RI_chrX_13266680_13267895,RI_chrX_13267529_13267895,I_chrX_13271541_13271890 chrX + chrX_13265560_13267895;chrX_13265401_13267895;chrX_13265248_13267895;chrX_13265094_13267895 chrX_13265295_13267895 chrX_13267896_13267973;chrX_13265065_13265093 20.69 22.73 22.22 25.71 27.78 25.00 30.43 23.53 25.00 7.14 30.00 26.32 12.50 36.36 24.00 20.69 33.33 22.22 33.33 22.00 22.73 10.34 19.23 25.00 26.67 17.65 17.24 17.65 15.15 16.13 29.17 4.17 10.64 21.21 9.09 31.58 18.92 14.29 14.71 16.67 16.67 25.71 23.53 22.73 8.00 18.75 26.32 10.81 31.71 14.29 19.35 11.11 19.05 18.18 36.84 18.75 16.67 9.84 K intron_retention CG34408,I_chrX_10120689_10121004 chrX + chrX_10116620_10118346 chrX_10116619_10116620;chrX_10118346_10118347 chrX_10116359_10116619;chrX_10118347_10118396 4.45 4.35 NA 8.70 0.00 NA 9.09 0.00 9.52 NA 0.00 6.25 NA 0.00 NA 9.52 6.67 5.26 NA 21.74 0.00 0.00 6.67 2.94 9.52 NA 0.00 5.00 14.29 0.00 NA NA NA 8.33 14.29 0.00 11.76 0.00 4.55 7.14 NA 4.65 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 2.70 0.00 NA NA 5.56 6.67 0.00 NA K jcn_only_AD I_chr3R_16141663_16144698,CG5077,I_chr3R_16147605_16147670 chr3R + chr3R_16147603_16147670 chr3R_16147605_16147670 chr3R_16147671_16147746;chr3R_16147505_16147602 0.48 0.00 0.45 0.32 0.32 0.71 0.36 0.30 0.48 1.46 0.00 0.49 0.63 0.26 0.80 0.70 0.30 0.00 0.18 0.61 0.85 0.97 0.00 0.37 0.57 0.77 1.06 3.04 0.62 1.05 0.52 0.00 0.69 0.46 0.63 0.18 0.24 0.31 0.67 0.87 0.49 0.58 0.31 0.00 0.44 0.44 0.00 0.00 0.24 0.00 0.86 1.55 0.47 0.48 0.34 0.83 0.91 0.51 K intron_retention blow,RI_chr2R_3470434_3470776 chr2R - chr2R_3470434_3474436 chr2R_3470433_3470434;chr2R_3474436_3474437 chr2R_3470334_3470433;chr2R_3474437_3474581 54.36 NA NA NA NA NA NA NA 55.56 41.67 NA 54.55 NA NA NA NA NA 90.91 NA 30.00 NA 62.50 30.77 NA 33.33 NA NA 66.67 69.57 NA 17.65 NA 54.17 NA NA NA NA NA NA 40.00 47.06 60.00 NA NA 37.50 60.00 50.00 57.14 63.64 NA 60.00 NA NA NA NA NA NA 50.00 K intron_retention CG7546 chr3L + chr3L_7508878_7508925 chr3L_7508877_7508878;chr3L_7508925_7508926 chr3L_7508741_7508877;chr3L_7508926_7508962 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 2.94 NA 6.25 13.33 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA 0.00 NA 0.00 NA 0.00 NA NA NA NA NA NA NA K intron_retention Ac3,I_chr2L_21635211_21637957,I_chr2L_21643253_21646594 chr2L + chr2L_21635211_21637658 chr2L_21635210_21635211;chr2L_21637658_21637659 chr2L_21635129_21635210;chr2L_21637659_21637786 20.00 NA NA 38.46 NA NA 50.00 NA 15.79 NA NA 10.53 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA 0.00 NA 20.00 NA NA NA NA NA NA 10.53 NA NA NA 60.00 NA NA NA NA 12.00 NA 28.57 NA NA NA NA NA NA NA K jcn_only_AD Med,CG1792 chr3R + chr3R_27440353_27440411 chr3R_27440357_27440411 chr3R_27440412_27441478;chr3R_27440226_27440352 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD RpL29,I_chr2R_17184688_17191389 chr2R + chr2R_17181380_17181558;chr2R_17181295_17181558 chr2R_17181384_17181558 chr2R_17181559_17181664;chr2R_17181294_17181294 1.55 1.56 1.41 1.01 1.53 1.75 1.14 1.11 1.22 2.22 1.38 1.51 1.93 1.19 1.26 1.41 1.30 1.72 1.42 1.55 1.30 0.63 2.84 2.02 2.65 1.21 5.76 1.98 2.45 1.04 1.54 2.82 1.72 1.26 2.13 2.18 2.59 2.27 3.77 1.31 1.29 1.18 1.28 2.20 1.70 2.50 2.23 1.78 1.09 2.23 1.38 2.40 1.64 4.51 1.33 3.23 1.34 1.40 K intron_retention CG6126 chr3R - chr3R_12024920_12024981 chr3R_12024919_12024920;chr3R_12024981_12024982 chr3R_12023691_12024919;chr3R_12024982_12025616 0.00 0.00 2.15 2.86 0.00 0.00 1.39 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.51 0.00 1.32 0.00 0.00 1.54 5.71 0.00 3.45 0.00 2.27 0.79 0.00 0.00 0.00 1.67 0.00 1.12 0.93 1.85 1.47 0.00 0.00 0.00 0.00 0.00 3.08 0.00 0.00 4.11 0.00 0.00 0.00 0.00 1.27 0.00 1.19 K alternative_donor Pvr,I_chr2L_8226604_8228082,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8227151_8227669 chr2L_8227151_8227651 chr2L_8227095_8227150;chr2L_8227670_8227720 75.00 80.00 72.73 95.24 90.48 78.26 64.71 78.79 77.14 55.00 NA 79.07 91.67 88.24 76.67 62.26 62.96 67.86 79.41 65.52 87.50 NA 70.00 72.41 84.00 72.00 84.00 NA 77.78 71.43 74.36 55.56 66.67 77.78 76.00 58.62 75.00 84.21 75.00 80.43 55.56 78.00 56.25 53.85 87.50 75.00 75.00 66.67 83.33 75.00 80.00 70.83 61.11 69.23 87.50 65.00 NA 80.00 K intron_retention r-l chr3R - chr3R_16896496_16896551 chr3R_16896495_16896496;chr3R_16896551_16896552 chr3R_16896446_16896495;chr3R_16896552_16896639 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.64 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.41 100.00 100.00 100.00 K mutually_exclusive CG5674 chr2L + chr2L_17963606_17971871,chr2L_17972004_17972262 chr2L_17963606_17969371,chr2L_17969519_17972262 chr2L_17971872_17972003 chr2L_17969372_17969518 chr2L_17963396_17963605;chr2L_17972263_17974832 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 83.33 NA NA NA NA NA 84.62 NA NA NA NA NA NA 100.00 NA NA 80.00 K jcn_only_AD CG17829 chrX + chrX_520827_520931 chrX_520854_520931 chrX_520932_521515;chrX_520537_520826 100.00 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA 95.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG12567,I_chr2LHet_20671_20722,I_chr2LHet_21570_31874 chr2LHet - chr2LHet_20651_20722 chr2LHet_20671_20722 chr2LHet_20723_20822;chr2LHet_20571_20650 0.57 0.91 0.00 0.00 0.95 0.00 0.43 0.42 0.27 1.59 0.95 0.36 0.79 0.00 0.58 0.66 0.00 1.88 1.01 0.45 1.41 0.44 0.00 1.76 1.22 0.00 0.00 1.31 0.88 0.69 1.52 0.37 0.60 1.10 0.79 0.00 0.62 0.00 0.00 0.36 0.00 0.66 0.00 2.15 0.66 0.57 1.55 0.38 0.86 0.00 1.37 1.54 0.00 0.00 0.49 0.00 0.58 0.00 K alternative_acceptor Mob4 chr2R - chr2R_2583337_2583396 chr2R_2583349_2583396 chr2R_2583397_2583465;chr2R_2583268_2583336 5.21 5.41 6.99 6.16 6.90 2.14 5.92 4.92 4.78 5.45 5.49 4.26 4.12 5.21 3.14 5.11 4.12 2.61 6.32 5.84 4.67 5.88 4.13 4.24 6.38 6.82 6.31 3.15 8.33 5.97 6.03 8.57 5.71 5.11 6.84 2.88 5.00 4.25 5.59 6.53 5.04 4.00 3.12 6.56 4.55 4.19 6.00 3.70 5.60 5.73 5.48 4.31 2.55 5.03 7.43 4.06 4.07 5.45 K alternative_donor stc chr2L + chr2L_15114214_15114299 chr2L_15114235_15114299 chr2L_15114300_15114310;chr2L_15114049_15114213 18.67 23.44 13.79 16.98 12.24 17.86 20.93 21.35 17.95 20.00 19.15 18.87 19.23 19.05 30.99 12.09 18.92 20.37 17.39 18.67 21.28 17.54 19.23 24.21 22.89 16.67 24.56 20.88 38.46 16.36 18.18 13.08 13.97 17.98 14.10 30.59 22.22 21.74 22.43 17.91 21.83 17.70 16.00 17.14 11.45 18.12 12.16 15.89 13.68 20.00 17.60 20.83 22.03 13.79 21.33 18.03 19.61 12.84 K intron_retention CG10365,I_chr3R_19554176_19554388 chr3R + chr3R_19554263_19554388 chr3R_19554262_19554263;chr3R_19554388_19554389 chr3R_19554197_19554262;chr3R_19554389_19554488 21.05 NA NA NA NA 50.00 53.85 25.00 19.23 0.00 5.56 42.11 0.00 NA 41.67 12.50 NA 10.53 30.77 16.67 NA NA 25.00 NA NA NA NA NA NA NA 40.00 28.57 17.65 41.18 16.67 NA 14.29 NA 23.08 26.92 7.69 45.00 NA 26.67 10.53 16.67 21.05 19.44 25.00 25.00 20.00 NA 15.38 11.11 27.78 17.65 NA 31.58 K intron_retention CG4389,I_chr2L_9576230_9576665 chr2L - chr2L_9575239_9575294 chr2L_9575238_9575239;chr2L_9575294_9575295 chr2L_9574469_9575238;chr2L_9575295_9575435 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6701,RI_chr2R_9866896_9867532 chr2R - chr2R_9861916_9862095 chr2R_9861915_9861916;chr2R_9862095_9862096 chr2R_9860549_9861915;chr2R_9862096_9862342 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 1.18 0.00 1.80 0.00 0.00 0.00 1.35 0.00 0.69 0.00 0.00 0.00 0.00 1.47 0.00 0.84 2.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 K alternative_donor I_chr3L_18664773_18665233,GNBP2,I_chr3L_18667579_18667644 chr3L - chr3L_18668078_18668437;chr3L_18668078_18668478 chr3L_18668078_18668318 chr3L_18667645_18668077;chr3L_18668479_18668494 83.33 100.00 88.89 89.19 83.33 81.25 90.20 93.18 82.00 NA 83.33 73.68 73.68 84.21 92.31 95.83 76.19 76.92 88.46 67.44 83.33 81.82 86.67 86.67 75.00 83.33 92.31 85.71 87.50 71.43 74.07 77.78 80.00 87.50 100.00 87.50 68.75 100.00 58.33 80.00 66.67 75.86 81.25 78.57 87.50 92.31 56.25 90.91 84.44 75.00 84.62 78.57 NA 100.00 71.43 80.00 100.00 92.31 K cassette sec31,I_chr2R_4783150_4783708 chr2R + chr2R_4783150_4783708 chr2R_4783150_4783455;chr2R_4783559_4783708 chr2R_4783456_4783558 chr2R_4783050_4783149;chr2R_4783709_4783808 98.65 99.04 100.00 99.40 98.78 100.00 94.12 98.09 99.05 97.73 96.51 98.83 100.00 98.84 98.20 99.28 100.00 97.59 98.89 98.65 98.82 92.52 96.34 99.14 97.33 97.59 98.40 98.44 97.06 97.50 93.88 100.00 97.87 99.32 98.65 95.12 99.25 97.89 98.06 99.21 98.18 98.91 98.53 98.97 95.16 97.65 99.10 98.08 99.38 99.17 97.24 98.68 100.00 98.90 100.00 98.85 98.60 98.53 K intron_retention Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11837971_11838662 chr2R_11837970_11837971;chr2R_11838662_11838663 chr2R_11837919_11837970;chr2R_11838663_11838663 2.41 2.54 3.26 5.51 1.19 1.98 3.95 2.17 3.23 1.68 0.00 3.11 0.00 3.90 1.00 3.81 2.82 3.49 3.08 2.58 0.00 23.31 1.90 1.42 1.75 7.41 3.53 1.92 3.21 1.42 1.52 1.92 3.17 3.51 2.88 1.57 1.47 3.23 1.63 1.92 4.27 1.85 1.82 1.27 1.89 3.09 3.01 1.40 1.27 2.33 3.70 2.41 2.78 3.92 3.03 0.00 0.00 3.39 K intron_retention CG15609,C_chr2R_12899322_12900789,I_chr2R_12902708_12903184 chr2R - chr2R_12902708_12903167 chr2R_12902707_12902708;chr2R_12903167_12903168 chr2R_12902608_12902707;chr2R_12903168_12903182 3.70 NA 7.14 9.68 NA 14.29 25.00 3.70 9.30 NA NA 4.76 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 8.70 NA NA NA 0.00 NA 12.50 5.26 NA 16.67 NA NA NA 6.06 5.88 3.03 0.00 7.69 NA 0.00 NA 0.00 6.45 NA NA NA NA NA 0.00 NA NA 0.00 K intron_retention CG5224 chr2R + chr2R_14391167_14391245 chr2R_14391166_14391167;chr2R_14391245_14391246 chr2R_14391098_14391166;chr2R_14391246_14391354 3.03 0.00 0.00 0.00 0.00 0.00 6.56 5.71 0.00 2.17 0.00 0.00 0.00 0.00 5.26 9.52 13.33 0.00 7.41 2.44 0.00 4.92 8.89 0.00 4.88 10.53 18.18 13.79 29.41 3.57 3.03 5.26 7.69 6.06 0.00 16.67 0.00 2.70 0.00 0.00 22.73 5.77 0.00 8.00 0.00 2.56 0.00 12.50 10.00 3.57 4.17 2.94 0.00 0.00 10.71 2.13 3.64 21.05 K intron_retention CG17494 chr2L + chr2L_22473866_22476853 chr2L_22473865_22473866;chr2L_22476853_22476854 chr2L_22472624_22473865;chr2L_22476854_22477414 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 2.74 0.00 1.10 0.00 0.00 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG1815,I_chr3R_27501104_27501176 chr3R + chr3R_27495663_27496497 chr3R_27495663_27496485 chr3R_27495539_27495662;chr3R_27496498_27497517 90.48 87.18 89.74 87.50 82.86 94.74 79.17 87.10 87.10 92.86 97.14 83.64 91.43 94.29 88.89 92.00 93.55 90.00 93.02 86.15 100.00 84.62 86.05 97.83 96.15 93.55 96.00 92.86 81.82 96.88 89.36 90.48 85.42 92.54 78.57 85.29 96.36 74.07 90.24 86.49 NA 92.68 89.29 83.33 NA 88.46 NA 92.41 91.43 95.00 90.70 95.00 NA NA 91.38 NA NA NA K alternative_acceptor lama,I_chr3L_5346888_5347714 chr3L - chr3L_5340784_5347714 chr3L_5346888_5347714 chr3L_5347715_5347814;chr3L_5340732_5340783 0.00 0.00 0.00 4.76 0.00 0.00 3.57 3.45 3.23 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 2.27 2.86 0.00 0.00 0.00 3.70 21.95 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention Trn chr3L + chr3L_6190658_6190713 chr3L_6190657_6190658;chr3L_6190713_6190714 chr3L_6190483_6190657;chr3L_6190714_6191987 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 7.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention SP2637,Gint3 chr2R - chr2R_14528699_14528963 chr2R_14528698_14528699;chr2R_14528963_14528964 chr2R_14528389_14528698;chr2R_14528964_14529077 100.00 88.46 95.65 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 97.92 96.97 94.74 100.00 100.00 94.12 100.00 82.61 100.00 94.12 95.83 100.00 95.00 100.00 97.14 96.15 96.77 98.04 95.00 97.67 100.00 100.00 95.83 100.00 100.00 100.00 100.00 98.00 97.44 100.00 100.00 96.43 97.06 94.44 95.74 100.00 K intron_retention sgg,I_chrX_2565856_2566099,I_chrX_2566157_2566946 chrX + chrX_2565856_2566946 chrX_2565855_2565856;chrX_2566946_2566947 chrX_2565756_2565855;chrX_2566947_2567046 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG12030 chr3L + chr3L_649052_649178 chr3L_649052_649125 chr3L_648517_649051;chr3L_649179_649419 1.06 0.85 1.28 1.65 0.96 0.93 1.02 0.88 0.77 1.33 1.06 1.07 0.78 1.05 0.77 1.06 0.92 0.74 0.67 0.90 1.21 15.52 0.71 0.67 1.21 1.63 0.63 3.35 9.45 1.11 1.17 1.32 1.94 0.86 1.68 0.79 0.66 1.35 1.33 1.77 2.82 1.22 0.93 0.55 1.78 1.64 1.14 1.74 0.70 1.89 1.02 0.74 0.81 1.48 1.25 0.95 0.41 1.09 K cassette tou,RI_chr2R_7474644_7475275,I_chr2R_7479681_7491857,I_chr2R_7504956_7505020 chr2R - chr2R_7474644_7475275 chr2R_7474644_7475150;chr2R_7475217_7475275 chr2R_7475151_7475216 chr2R_7474602_7474643;chr2R_7475276_7475375 96.97 96.43 96.97 98.04 95.24 96.15 93.62 96.00 98.55 92.86 100.00 96.49 96.67 96.43 96.67 98.00 100.00 100.00 97.06 90.77 100.00 97.01 98.21 100.00 96.15 96.55 97.06 100.00 63.79 98.11 96.55 95.00 92.13 100.00 96.97 92.59 98.21 96.43 97.30 98.48 96.15 96.55 95.24 97.62 93.75 96.43 100.00 98.77 98.39 100.00 97.92 96.67 94.74 100.00 100.00 94.74 92.86 100.00 K intron_retention CG16791 chr3R - chr3R_17149476_17149602 chr3R_17149475_17149476;chr3R_17149602_17149603 chr3R_17149338_17149475;chr3R_17149603_17149740 0.00 5.13 0.00 3.85 3.70 0.00 3.45 0.00 3.39 1.89 0.00 5.26 0.00 0.00 0.00 0.00 8.33 0.00 5.26 0.00 0.00 3.70 1.45 3.64 0.00 5.71 2.13 3.85 0.00 0.00 0.00 0.00 0.00 3.08 0.00 0.00 2.53 1.82 1.11 3.49 2.38 1.33 0.00 0.00 7.02 0.00 0.00 2.27 1.59 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 3.08 K intron_retention kis,RI_chr2L_218886_227371,RI_chr2L_231035_231947,RI_chr2L_242745_242800,I_chr2L_242926_250756 chr2L - chr2L_226509_227371 chr2L_226508_226509;chr2L_227371_227372 chr2L_226116_226508;chr2L_227372_227471 0.00 0.00 0.00 2.56 0.00 0.00 2.22 0.00 1.09 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 K cassette opa1-like,I_chr2R_10119470_10120234,I_chr2R_10121848_10121900,I_chr2R_10122128_10122197,I_chr2R_10122334_10122393 chr2R - chr2R_10121848_10122197 chr2R_10121848_10121947;chr2R_10122065_10122197 chr2R_10121948_10122064 chr2R_10121778_10121847;chr2R_10122198_10122227 37.74 40.28 47.95 17.74 39.22 30.00 24.62 30.58 34.50 37.74 32.00 32.17 34.92 42.86 44.44 55.68 44.83 37.31 35.90 32.39 40.00 54.03 41.09 38.54 24.00 28.00 40.00 34.78 41.00 44.32 48.72 41.27 35.62 41.44 36.25 18.75 36.28 36.47 42.16 43.83 32.41 35.84 30.30 40.35 34.67 39.58 37.97 47.83 37.76 41.27 42.59 34.62 31.03 41.18 45.26 34.04 32.76 35.14 K jcn_only_AD AnnIX chr3R + chr3R_16891008_16893167;chr3R_16891137_16893167;chr3R_16891033_16893167 chr3R_16891124_16893167 chr3R_16893168_16893221;chr3R_16890951_16891007 14.29 13.85 11.46 11.01 13.33 14.12 24.36 8.94 11.33 16.67 25.84 14.22 23.58 12.44 7.28 12.16 10.34 10.60 11.54 10.45 22.89 14.89 16.67 17.20 18.00 12.79 18.25 14.29 18.75 31.58 14.62 14.63 9.68 8.70 26.23 28.41 18.42 16.42 15.71 13.33 13.21 10.66 11.61 23.08 8.57 20.26 20.56 14.29 10.76 30.23 22.45 12.68 20.34 21.70 9.86 26.26 22.35 12.16 K intron_retention CG8889 chr2R - chr2R_7914491_7914546 chr2R_7914490_7914491;chr2R_7914546_7914547 chr2R_7914406_7914490;chr2R_7914547_7914656 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 10.81 0.00 0.00 0.00 0.00 0.00 NA 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K alternative_acceptor rgn chr3L + chr3L_21413463_21413564 chr3L_21413463_21413540 chr3L_21413351_21413462;chr3L_21413565_21413789 50.00 42.31 41.38 72.97 42.42 37.04 84.00 52.38 46.15 46.15 59.09 43.28 40.74 53.12 41.86 46.34 51.85 43.75 40.00 50.00 55.17 25.58 47.17 58.54 57.14 57.14 58.33 92.86 69.57 46.15 48.48 50.00 51.43 40.00 51.52 60.00 55.56 45.45 47.54 46.77 NA 42.67 53.85 29.17 40.91 65.79 55.77 42.86 40.82 72.09 50.88 53.85 64.52 65.00 46.51 73.17 78.72 46.67 K jcn_only_AD CG17490 chr2L + chr2L_22431120_22432684;chr2L_22431088_22432684;chr2L_22431020_22432684 chr2L_22431301_22432684 chr2L_22432685_22433056;chr2L_22431014_22431019 58.19 NA NA NA NA NA NA 41.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 75.00 K jcn_only_AD Syx4,I_chrX_2635555_2635621,I_chrX_2636831_2636971 chrX - chrX_2633579_2633652;chrX_2633579_2635455 chrX_2633579_2633742 chrX_2633330_2633578;chrX_2635456_2635529 17.65 20.00 14.89 11.90 16.13 24.36 13.64 14.18 17.72 54.55 15.48 10.24 27.91 15.71 20.20 14.78 19.72 18.99 18.00 17.58 22.54 9.09 12.31 19.70 15.38 23.53 12.20 11.54 NA 8.00 12.73 20.97 26.21 14.44 19.72 16.67 16.07 21.15 15.58 18.52 13.11 18.13 13.51 5.13 15.70 20.79 22.73 17.98 21.15 10.34 17.91 17.07 34.38 25.00 15.97 24.36 22.22 31.00 K alternative_donor REI_chr3L_3042451_3043440,Jafrac2,I_chr3L_3042851_3043044,I_chr3L_3043202_3043271 chr3L + chr3L_3043202_3043271 chr3L_3043206_3043271 chr3L_3043272_3043339;chr3L_3043138_3043201 100.00 98.63 100.00 98.08 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 97.37 100.00 96.77 97.50 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 97.78 96.43 100.00 96.97 97.56 100.00 100.00 100.00 100.00 100.00 100.00 97.89 100.00 96.30 98.96 100.00 100.00 100.00 98.39 98.63 100.00 100.00 98.75 98.31 97.62 100.00 98.57 100.00 98.77 99.26 100.00 K alternative_donor CG3508 chr3R + chr3R_10485305_10485465 chr3R_10485338_10485465 chr3R_10485466_10486020;chr3R_10485170_10485304 13.33 NA NA NA NA NA NA 30.77 21.43 NA NA 18.75 NA NA NA 9.09 NA NA NA 12.50 NA NA 5.00 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA 18.75 NA 14.29 NA NA NA NA 13.33 NA NA K alternative_acceptor dah,I_chrX_15223901_15223968,I_chrX_15232958_15233665 chrX + chrX_15222986_15223051 chrX_15222986_15223042 chrX_15222858_15222985;chrX_15223052_15223900 100.00 100.00 100.00 100.00 100.00 NA 100.00 90.91 100.00 NA NA 92.31 NA NA 100.00 100.00 NA 100.00 NA 100.00 NA NA 100.00 100.00 NA NA 90.00 NA NA NA 100.00 NA 91.67 100.00 NA 100.00 100.00 NA 100.00 92.86 NA 100.00 NA NA 87.50 NA 91.67 100.00 92.31 90.00 NA 88.89 NA NA 87.50 NA NA NA K intron_retention CG10959,I_chrX_8043524_8043577,I_chrX_8043625_8043682 chrX + chrX_8043510_8043577 chrX_8043509_8043510;chrX_8043577_8043578 chrX_8043424_8043509;chrX_8043578_8043624 0.00 NA NA 0.00 NA NA NA NA 5.26 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 K intron_retention CG6490,F_chr3R_22303527_22303741 chr3R - chr3R_22358145_22360445 chr3R_22358144_22358145;chr3R_22360445_22360446 chr3R_22357835_22358144;chr3R_22360446_22360939 71.43 NA 66.67 69.23 NA NA 68.18 100.00 68.18 NA NA 76.47 NA NA NA 71.43 63.64 77.78 63.64 81.82 NA 70.00 NA NA NA 90.00 NA NA NA NA 88.89 NA 66.67 90.00 NA 66.67 NA NA NA NA NA 80.00 NA NA NA NA NA 61.54 78.95 NA NA NA NA NA 73.33 NA NA NA K cassette l(2)k09913 chr2R + chr2R_18954831_18958129 chr2R_18954831_18955469;chr2R_18955652_18958129 chr2R_18955470_18955651 chr2R_18954762_18954830;chr2R_18958130_18958411 95.77 95.40 93.94 65.00 88.24 93.10 94.74 81.08 94.57 95.77 83.33 96.55 97.37 90.91 88.89 88.89 100.00 92.16 97.44 98.64 85.19 95.30 99.09 98.39 98.46 87.80 88.71 79.17 97.70 92.16 96.88 97.83 96.05 98.55 94.74 97.00 97.24 97.03 96.69 94.36 92.93 92.14 97.73 96.04 96.70 96.64 96.23 97.12 97.22 90.28 98.95 98.33 99.00 92.55 95.16 97.83 94.44 93.81 K intron_retention Cpr chr2L + chr2L_6344284_6344343 chr2L_6344283_6344284;chr2L_6344343_6344344 chr2L_6344159_6344283;chr2L_6344344_6344945 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.60 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention NetB,CG32595,I_chrX_14642093_14642682,CG15890 chrX - chrX_14612668_14612726 chrX_14612667_14612668;chrX_14612726_14612727 chrX_14612288_14612667;chrX_14612727_14612985 0.00 0.00 0.00 2.86 0.00 0.00 4.00 0.00 0.00 0.00 NA 3.92 0.00 0.00 0.00 0.00 0.00 NA 2.70 0.00 NA NA 3.85 0.00 0.00 0.00 8.70 NA 0.00 NA 0.00 NA 7.14 10.53 NA 0.00 0.00 0.00 0.00 0.00 0.00 7.69 3.45 9.52 NA 0.00 0.00 NA 0.00 8.33 0.00 0.00 10.53 0.00 0.00 9.68 5.13 0.00 K intron_retention RpL10Ab chr3L + chr3L_11816456_11816757 chr3L_11816455_11816456;chr3L_11816757_11816758 chr3L_11816300_11816455;chr3L_11816758_11817314 1.00 0.98 0.87 0.84 0.74 0.86 0.77 1.16 0.77 1.34 0.81 0.92 1.04 0.98 0.83 0.60 0.95 0.77 0.94 0.83 0.80 1.30 1.13 0.99 1.34 0.91 1.04 2.65 1.25 1.44 3.35 1.20 1.84 1.00 1.18 1.01 1.03 1.35 1.02 0.91 1.47 0.86 0.73 1.44 1.36 1.02 1.08 0.87 1.75 1.49 1.65 1.31 0.85 0.85 0.91 1.32 0.95 0.75 N multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2814174;chr2R_2814327_2816013;chr2R_2816342_2816577;chr2R_2816779_2817753 chr2R_2814175_2814326;chr2R_2816014_2816341;chr2R_2816578_2816778 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention cnc,I_chr3R_19014852_19016738,I_chr3R_19046366_19046507,I_chr3R_19046619_19047567 chr3R - chr3R_19035606_19043600 chr3R_19035605_19035606;chr3R_19043600_19043601 chr3R_19035330_19035605;chr3R_19043601_19044848 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 4.26 0.00 NA 0.00 NA 0.00 3.12 0.00 0.00 0.00 0.00 0.00 NA 2.35 0.00 0.00 0.00 0.00 0.00 0.00 3.77 2.70 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 5.26 0.00 6.67 0.00 6.25 0.00 0.00 5.63 0.00 NA 0.00 0.00 0.00 0.00 5.00 0.00 NA 5.00 K intron_retention Tao-1,E_chrX_19467010_19469645 chrX - chrX_19467262_19467323 chrX_19467261_19467262;chrX_19467323_19467324 chrX_19466899_19467261;chrX_19467324_19467497 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.49 0.00 0.00 1.54 0.00 2.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17471,RI_chr4_1213397_1214333,RI_chr4_1213397_1216053,RI_chr4_1214248_1214333,I_chr4_1214293_1214333,RI_chr4_1215991_1216053,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1213397_1214185 chr4_1213396_1213397;chr4_1214185_1214186 chr4_1213332_1213396;chr4_1214186_1214247 0.00 0.00 2.33 18.18 0.00 0.00 7.81 5.26 2.08 NA 0.00 3.77 0.00 0.00 0.00 1.14 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.78 NA NA 0.00 0.00 0.00 2.56 3.49 0.00 7.69 0.00 0.00 0.00 0.00 0.00 2.82 5.13 0.00 0.00 0.00 0.00 2.63 5.56 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention hts,I_chr2R_15311185_15312327,I_chr2R_15311303_15311544,I_chr2R_15311303_15312026 chr2R - chr2R_15311303_15312327 chr2R_15311302_15311303;chr2R_15312327_15312328 chr2R_15311203_15311302;chr2R_15312328_15312346 5.80 7.69 2.38 28.57 0.00 3.12 12.24 7.81 6.48 NA 0.00 3.03 6.06 9.68 10.34 17.07 0.00 0.00 8.57 2.56 0.00 0.00 0.00 13.04 30.77 5.56 0.00 NA NA NA 5.71 NA NA 7.14 NA 0.00 3.85 NA 8.70 7.14 NA 5.80 6.25 11.43 NA NA NA NA 3.92 0.00 2.86 8.33 NA NA 7.14 0.00 6.25 NA K intron_retention egl chr2R - chr2R_19626395_19631859 chr2R_19626394_19626395;chr2R_19631859_19631860 chr2R_19626149_19626394;chr2R_19631860_19632137 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor I_chr2L_13965397_13965694,RI_chr2L_13967695_13967746,nimB4 chr2L - chr2L_13969445_13969618 chr2L_13969461_13969618 chr2L_13969619_13969964;chr2L_13968897_13969444 100.00 97.30 100.00 100.00 100.00 100.00 100.00 98.59 99.12 100.00 97.44 96.34 98.57 100.00 100.00 97.67 97.44 97.62 100.00 100.00 100.00 95.83 92.31 100.00 100.00 95.12 96.88 100.00 100.00 95.00 78.12 100.00 100.00 100.00 100.00 95.83 97.30 100.00 97.37 94.29 96.30 98.72 97.06 100.00 96.55 100.00 100.00 100.00 97.73 98.11 100.00 92.31 100.00 100.00 100.00 100.00 98.85 98.89 K cassette CG4266,I_chr2R_17052549_17053657 chr2R - chr2R_17052549_17054234 chr2R_17052549_17053063;chr2R_17053380_17054234 chr2R_17053064_17053379 chr2R_17052449_17052548;chr2R_17054235_17054339 85.87 89.91 84.88 77.12 91.55 92.41 80.00 82.14 88.30 92.37 83.58 85.87 73.77 80.95 93.15 78.02 88.52 89.29 78.57 86.91 79.76 88.89 86.22 90.97 78.00 74.36 76.12 87.50 90.76 89.71 42.07 84.95 82.08 85.40 85.12 72.64 88.35 87.68 85.47 84.08 69.66 87.24 90.91 84.48 96.23 77.21 85.95 82.90 87.58 87.74 86.54 83.82 88.33 83.16 90.91 84.76 88.17 89.93 K alternative_acceptor CG14225,I_chrX_19569702_19569879,I_chrX_19573364_19573474 chrX - chrX_19569689_19569836 chrX_19569702_19569836 chrX_19569837_19569924;chrX_19569602_19569688 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045251_16046129 chr3L_16045250_16045251;chr3L_16046129_16046130 chr3L_16045216_16045250;chr3L_16046130_16046204 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 NA 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA 100.00 100.00 NA 100.00 K intron_retention CG1427,RI_chr3R_1427548_1427635 chr3R + chr3R_1427585_1427681 chr3R_1427584_1427585;chr3R_1427681_1427682 chr3R_1427482_1427584;chr3R_1427682_1427704 95.91 100.00 92.31 100.00 100.00 100.00 92.86 100.00 95.24 NA 100.00 91.67 86.67 100.00 88.24 91.67 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 92.86 93.33 100.00 100.00 100.00 90.00 96.55 100.00 100.00 92.86 100.00 94.12 94.12 92.86 94.12 96.00 90.00 95.83 90.00 100.00 93.75 88.89 100.00 93.75 95.45 92.31 92.31 100.00 100.00 100.00 86.67 92.86 92.86 96.00 K intron_retention CG1513,I_chr2R_5778649_5778739 chr2R - chr2R_5774560_5774670 chr2R_5774559_5774560;chr2R_5774670_5774671 chr2R_5774436_5774559;chr2R_5774671_5774914 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention HLH106,RI_chr3L_19787260_19787323 chr3L + chr3L_19787251_19788001 chr3L_19787250_19787251;chr3L_19788001_19788002 chr3L_19787160_19787250;chr3L_19788002_19789492 60.00 50.00 63.16 52.94 NA 66.67 60.87 60.71 34.62 NA 60.00 65.52 58.82 56.52 40.00 81.40 60.00 30.77 56.52 54.84 45.45 66.67 54.55 60.00 NA 60.00 41.67 NA 46.15 NA 52.63 NA NA 58.62 80.00 NA NA 63.64 NA NA NA 62.50 55.00 NA NA 66.67 NA 46.15 52.17 NA 60.00 NA NA NA 68.18 63.64 87.50 NA K jcn_only_AA CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9905053_9905137 chr2L_9905084_9905137 chr2L_9905138_9905241;chr2L_9904827_9905052 3.85 3.57 0.00 NA NA NA NA NA 0.00 NA NA 5.00 NA NA 4.17 NA NA 0.00 NA 2.63 NA 1.47 8.11 3.45 NA NA 2.70 4.55 11.48 15.62 NA 5.88 6.67 0.00 3.85 10.00 2.63 13.89 2.44 5.00 31.43 2.86 NA 2.04 0.00 5.56 3.03 2.04 10.34 3.57 0.00 NA 6.06 3.70 8.00 4.76 4.55 6.25 K intron_retention Ndae1,I_chr2L_7231127_7234203,I_chr2L_7231184_7234525,I_chr2L_7231981_7234526,CREI_chr2L_7232646_7232704,I_chr2L_7234342_7234526 chr2L - chr2L_7231184_7234526 chr2L_7231183_7231184;chr2L_7234526_7234527 chr2L_7231127_7231183;chr2L_7234527_7234625 0.00 0.00 0.00 0.00 3.70 2.94 10.87 1.96 6.25 0.00 7.14 6.35 0.00 0.00 0.00 2.56 3.33 3.33 0.00 4.44 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 4.76 4.65 NA 0.00 3.17 9.09 0.00 0.00 0.00 5.26 6.25 0.00 1.47 0.00 0.00 0.00 0.00 NA 0.00 1.41 NA 0.00 0.00 NA NA 5.26 NA 0.00 0.00 K intron_retention CG40042 chr2LHet - chr2LHet_168170_168233 chr2LHet_168169_168170;chr2LHet_168233_168234 chr2LHet_167980_168169;chr2LHet_168234_168403 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9947,eIF-2alpha chrX - chrX_16334196_16334249 chrX_16334195_16334196;chrX_16334249_16334250 chrX_16333860_16334195;chrX_16334250_16334445 2.42 7.03 1.45 2.98 2.30 1.36 2.90 2.30 2.44 3.97 1.08 2.37 2.70 2.65 2.11 4.39 0.42 1.46 2.35 2.42 2.02 4.24 2.45 2.37 3.74 2.29 1.92 1.82 3.45 2.21 2.48 1.86 2.66 2.62 2.74 6.79 3.61 17.65 1.56 3.19 4.13 2.58 1.14 2.47 2.61 2.31 1.89 3.39 2.12 3.43 2.05 2.14 1.64 2.42 1.32 5.68 2.36 3.17 K intron_retention EloA chr3R + chr3R_19077680_19077970 chr3R_19077679_19077680;chr3R_19077970_19077971 chr3R_19077294_19077679;chr3R_19077971_19078558 3.33 5.26 0.00 11.43 NA 0.00 12.50 6.06 10.00 0.00 NA 13.04 0.00 0.00 0.00 0.00 NA 0.00 NA 3.08 NA 13.04 3.61 0.00 4.44 NA 6.82 5.45 15.79 2.44 0.00 0.00 3.92 6.67 3.33 0.00 5.26 4.35 1.72 4.29 7.69 4.65 NA 3.92 0.00 3.33 0.00 0.00 2.78 11.76 3.77 0.00 0.00 6.67 3.85 0.00 0.00 0.00 K intron_retention CG9572 chrX + chrX_20044870_20044977 chrX_20044869_20044870;chrX_20044977_20044978 chrX_20044631_20044869;chrX_20044978_20045059 0.00 14.29 NA NA NA NA NA NA 8.33 NA NA 0.00 NA NA NA NA NA NA NA 9.09 NA NA 0.00 0.00 NA NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 0.00 4.44 3.85 0.00 0.00 NA 8.33 0.00 0.00 0.00 NA 0.00 0.00 3.85 NA NA NA NA 8.33 0.00 4.76 K cassette CG11299,noncoding_8970,I_chr2R_19602423_19609308,I_chr2R_19619053_19619186 chr2R + chr2R_19601642_19609732;chr2R_19601642_19616571 chr2R_19601642_19602229;chr2R_19602423_19609732,chr2R_19602423_19616571 chr2R_19602230_19602422 chr2R_19601628_19601641;chr2R_19616572_19616757 97.87 95.65 100.00 97.06 90.00 100.00 100.00 95.24 96.72 100.00 100.00 96.97 96.67 100.00 100.00 97.56 100.00 95.00 96.43 98.15 100.00 100.00 88.46 93.75 87.50 100.00 95.00 100.00 80.00 90.91 95.83 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 90.00 97.44 94.74 100.00 100.00 93.75 100.00 100.00 97.87 91.67 96.00 91.67 100.00 91.67 96.55 93.75 100.00 100.00 K intron_retention I_chr3R_8822346_8822403,CG7518 chr3R + chr3R_8824823_8825162 chr3R_8824822_8824823;chr3R_8825162_8825163 chr3R_8824749_8824822;chr3R_8825163_8825241 6.67 7.14 3.57 1.72 0.00 8.33 6.56 2.67 6.12 3.70 10.34 4.46 16.00 5.45 8.89 7.04 7.69 21.74 6.38 10.10 11.11 8.22 3.45 5.06 3.92 8.89 5.26 12.50 6.82 4.62 9.68 9.38 7.02 5.33 6.67 3.57 14.13 5.63 5.61 5.94 10.00 6.00 6.98 3.12 23.08 16.07 4.35 5.08 6.12 6.45 5.21 14.29 16.67 10.81 3.57 14.29 27.59 8.33 K intron_retention fwd,I_chr3L_310787_310918,RI_chr3L_319514_319746 chr3L - chr3L_307631_307694 chr3L_307630_307631;chr3L_307694_307695 chr3L_307512_307630;chr3L_307695_310178 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.39 4.44 0.00 2.11 10.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.68 0.00 0.00 0.00 2.90 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_donor ATPsyn-Cf6,I_chr3R_19181508_19181563,I_chr3R_19181524_19181702 chr3R - chr3R_19181508_19183230;chr3R_19181508_19181702 chr3R_19181508_19181584 chr3R_19181424_19181507;chr3R_19183231_19184049 2.45 1.74 0.64 3.48 0.71 1.41 4.17 2.07 2.24 3.28 2.17 1.86 3.25 0.83 1.63 1.89 1.68 2.78 2.94 1.35 2.82 2.70 3.06 2.45 6.84 4.03 4.97 1.92 6.47 3.25 2.56 0.60 2.02 1.49 3.12 3.36 2.94 2.78 2.14 3.23 0.61 0.67 1.80 3.70 1.26 3.28 2.09 2.22 1.27 4.27 3.85 3.74 2.82 3.03 1.67 2.13 3.46 1.41 K jcn_only_AD fws,CG6453 chr2L - chr2L_17480920_17480968;chr2L_17480920_17480972;chr2L_17480920_17480983 chr2L_17480920_17481149 chr2L_17480825_17480919;chr2L_17481150_17481199 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention MB6.chr3R.pasa.9963,lig3 chr3R - chr3R_8222988_8223055 chr3R_8222987_8222988;chr3R_8223055_8223056 chr3R_8222926_8222987;chr3R_8223056_8223250 7.29 10.81 11.43 18.64 4.76 3.23 7.81 7.08 6.74 NA 0.00 5.00 5.66 4.17 8.89 9.64 11.63 5.88 5.63 8.22 0.00 10.00 21.21 9.09 0.00 0.00 24.44 NA NA 4.35 19.48 12.50 14.29 7.50 6.45 0.00 22.22 8.82 0.00 6.67 0.00 9.09 8.93 0.00 6.25 3.45 8.00 25.00 7.92 8.33 2.38 8.70 0.00 0.00 6.78 10.81 0.00 15.38 K jcn_only_AA CG1074,I_chr3R_261173_261244,RI_chr3R_265878_265942 chr3R + chr3R_261173_261244 chr3R_261173_261228 chr3R_261073_261172;chr3R_261245_261344 100.00 100.00 96.15 100.00 100.00 NA 97.14 95.00 100.00 96.55 100.00 100.00 NA 100.00 97.37 100.00 100.00 100.00 96.97 98.44 NA 100.00 100.00 96.67 NA 96.43 100.00 100.00 95.65 100.00 96.77 97.06 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 97.73 100.00 100.00 100.00 98.28 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 K intron_retention CG9526 chr2L + chr2L_6457490_6457539 chr2L_6457489_6457490;chr2L_6457539_6457540 chr2L_6457338_6457489;chr2L_6457540_6457916 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.48 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.97 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17233,I_chr3L_20232803_20232962,RI_chr3L_20232898_20232962 chr3L - chr3L_20231011_20231837 chr3L_20231010_20231011;chr3L_20231837_20231838 chr3L_20229534_20231010;chr3L_20231838_20232644 0.00 0.00 0.00 0.00 5.88 0.00 4.00 0.00 5.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor kar,I_chr3R_8510258_8513437,I_chr3R_8513840_8514930,I_chr3R_8514177_8514930 chr3R - chr3R_8513844_8514930 chr3R_8513844_8513900 chr3R_8513500_8513843;chr3R_8514931_8515030 50.00 NA NA 66.67 NA NA 66.67 NA 20.00 75.00 NA 100.00 100.00 NA NA 66.67 NA NA NA 33.33 NA 71.43 33.33 20.00 NA NA 33.33 NA NA NA NA NA 50.00 NA 100.00 25.00 25.00 16.67 33.33 33.33 NA 50.00 NA NA NA 50.00 NA 66.67 NA NA NA NA NA NA NA NA NA NA K intron_retention torp4a chrX - chrX_4542904_4542974 chrX_4542903_4542904;chrX_4542974_4542975 chrX_4542672_4542903;chrX_4542975_4543547 100.00 99.23 100.00 100.00 100.00 100.00 99.26 100.00 99.51 100.00 100.00 99.49 99.01 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.96 98.72 100.00 100.00 100.00 100.00 100.00 100.00 99.07 100.00 100.00 98.88 100.00 100.00 99.02 100.00 100.00 99.51 100.00 99.03 100.00 99.46 99.38 98.94 99.41 100.00 100.00 99.42 99.70 99.60 K intron_retention dor,hfw chrX + chrX_1561859_1561920 chrX_1561858_1561859;chrX_1561920_1561921 chrX_1561707_1561858;chrX_1561921_1562493 0.00 0.00 0.00 0.00 0.00 0.00 2.27 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 3.12 6.52 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Tfb1 chr2R + chr2R_10250627_10250756 chr2R_10250627_10250749 chr2R_10250565_10250626;chr2R_10250757_10251018 90.35 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 95.00 NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG12004 chr3L + chr3L_1573765_1574987 chr3L_1573765_1573993 chr3L_1573680_1573764;chr3L_1574988_1576330 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor RpL5,I_chr2L_22427822_22428348,psnoRNA:RpL5-a,F_chr2L_22428392_22428525,I_chr2L_22428750_22428846 chr2L - chr2L_22427796_22428348 chr2L_22427822_22428348 chr2L_22428349_22428391;chr2L_22427722_22427795 0.01 0.01 0.01 0.02 0.00 0.01 0.01 0.02 0.02 0.04 0.01 0.01 0.03 0.01 0.01 0.01 0.01 0.02 0.01 0.02 0.01 0.02 0.02 0.01 0.01 0.02 0.01 0.16 0.02 0.01 0.02 0.02 0.01 0.01 0.00 0.02 0.01 0.01 0.01 0.01 0.01 0.02 0.01 0.02 0.02 0.02 0.02 0.00 0.03 0.02 0.03 0.02 0.01 0.01 0.02 0.02 0.01 0.01 K intron_retention sec31,I_chr2R_4783150_4783708 chr2R + chr2R_4785679_4785755 chr2R_4785678_4785679;chr2R_4785755_4785756 chr2R_4785377_4785678;chr2R_4785756_4785827 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor glo,I_chr3R_7644679_7644739,REI_chr3R_7644679_7644932,RI_chr3R_7644683_7644880,I_chr3R_7647556_7647628 chr3R - chr3R_7644683_7644880;chr3R_7644683_7644739;chr3R_7644683_7644908;chr3R_7644683_7644743 chr3R_7644683_7644932 chr3R_7644583_7644682;chr3R_7644933_7644980 91.36 93.94 91.80 85.19 86.96 93.62 75.00 88.64 91.51 100.00 83.33 91.96 85.42 90.74 87.69 93.70 88.00 NA 87.10 92.46 93.55 86.03 92.17 88.46 90.20 80.43 93.07 95.40 80.77 93.40 86.42 93.90 88.64 87.62 95.16 97.47 91.53 93.33 90.77 93.08 89.09 88.39 87.50 95.88 87.27 92.86 93.44 92.37 87.31 94.74 90.41 90.48 96.43 93.10 85.71 91.76 91.21 95.00 K intron_retention CG30193,CG30190,noncoding_8782 chr2R + chr2R_18818690_18819037 chr2R_18818689_18818690;chr2R_18819037_18819038 chr2R_18818567_18818689;chr2R_18819038_18819238 55.56 NA NA NA NA NA 55.56 NA 73.33 NA NA 66.67 NA NA NA NA NA NA NA 46.15 NA 65.38 80.00 NA NA NA 53.85 NA 63.64 NA 41.67 54.55 70.59 NA NA 37.04 46.15 NA NA 47.83 61.11 46.15 NA NA 47.06 61.11 41.67 65.00 80.00 36.84 45.45 NA NA 75.00 NA NA NA 73.33 K jcn_only_AD cbs,I_chr2R_9340506_9340593,I_chr2R_9340512_9340593 chr2R + chr2R_9340536_9340593;chr2R_9340512_9340593 chr2R_9340506_9340593 chr2R_9340594_9340693;chr2R_9340412_9340505 4.60 1.85 6.00 3.49 5.71 0.00 4.80 5.00 3.85 0.00 8.57 2.33 9.76 3.57 6.90 5.68 4.76 13.95 3.03 4.67 2.94 NA 4.17 2.22 6.78 5.41 3.23 3.23 9.30 5.56 6.52 0.00 1.96 3.45 10.00 3.57 1.89 6.12 4.48 1.43 6.58 3.74 7.69 4.84 7.55 4.60 1.85 3.57 2.47 5.32 2.25 8.16 NA 3.17 6.41 10.11 8.33 4.17 K intron_retention CG7841,RI_chr3L_15499446_15500898,I_chr3L_15500695_15500898,RI_chr3L_15500713_15500898 chr3L - chr3L_15500667_15500898 chr3L_15500666_15500667;chr3L_15500898_15500899 chr3L_15500613_15500666;chr3L_15500899_15500998 13.33 NA NA NA NA NA 19.05 15.00 26.32 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA 12.50 16.67 NA 12.50 NA 5.56 21.43 NA NA 16.67 NA NA NA NA 14.29 6.67 13.33 13.33 NA 5.56 9.68 NA 5.00 NA 5.56 NA 14.29 21.05 NA 14.29 12.50 NA NA 25.00 NA NA NA K intron_retention LanB1 chr2L + chr2L_7811773_7814575 chr2L_7811772_7811773;chr2L_7814575_7814576 chr2L_7811459_7811772;chr2L_7814576_7814643 0.00 0.00 0.00 1.39 2.22 0.00 0.73 0.00 0.68 0.00 0.00 0.00 0.00 1.64 0.00 0.64 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 1.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor B52,F_chr3R_9488762_9491174,E_chr3R_9488770_9491174 chr3R + chr3R_9488127_9488691 chr3R_9488127_9488676 chr3R_9488019_9488126;chr3R_9488692_9488761 0.44 0.44 0.00 0.00 0.00 0.57 0.47 0.00 0.37 0.79 0.00 0.28 2.70 0.70 0.44 0.00 0.00 0.46 1.23 0.42 0.62 0.43 1.19 0.00 1.05 0.56 2.11 1.95 0.26 0.30 1.95 0.00 0.44 0.75 0.38 0.75 0.72 0.68 1.09 0.70 0.24 0.57 0.00 1.06 0.29 0.41 0.00 0.23 0.00 0.40 1.52 1.31 0.00 0.68 0.46 0.81 0.47 0.33 K intron_retention mbc,I_chr3R_19615584_19615649,I_chr3R_19625220_19625288 chr3R + chr3R_19625373_19625589 chr3R_19625372_19625373;chr3R_19625589_19625590 chr3R_19625289_19625372;chr3R_19625590_19625680 9.26 8.89 11.90 7.00 0.00 4.65 8.93 7.48 7.84 10.71 7.41 8.33 8.51 9.26 4.48 4.23 9.52 5.26 8.00 6.00 11.54 14.58 10.34 11.59 20.00 4.08 9.23 3.85 13.79 17.14 4.17 26.32 21.05 6.60 14.29 13.33 10.61 10.81 12.24 14.75 9.09 7.14 10.81 7.04 11.76 15.69 8.77 16.67 8.05 8.06 11.43 11.11 13.89 5.77 8.93 10.45 11.76 30.77 K intron_retention Idh,I_chr3L_8351006_8351949,I_chr3L_8351036_8351655 chr3L - chr3L_8351006_8351655 chr3L_8351005_8351006;chr3L_8351655_8351656 chr3L_8350936_8351005;chr3L_8351656_8351715 4.76 4.76 8.70 6.90 0.00 4.17 13.33 4.76 6.15 15.00 0.00 8.33 5.00 5.88 6.45 4.35 NA 0.00 0.00 2.99 0.00 20.83 6.67 4.88 5.13 3.85 6.98 17.65 4.55 0.00 NA 9.09 7.69 2.78 10.00 13.16 0.00 0.00 4.26 9.68 0.00 5.26 0.00 0.00 0.00 16.67 0.00 0.00 4.88 0.00 6.98 0.00 9.68 2.63 3.45 6.67 0.00 3.23 K cassette Asator chr4 - chr4_495731_497917 chr4_495731_497588;chr4_497729_497917 chr4_497589_497728 chr4_495702_495730;chr4_497918_497940 85.71 NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG4825,RI_chr3L_20516382_20516451 chr3L - chr3L_20516382_20516451 chr3L_20516385_20516451 chr3L_20516452_20516551;chr3L_20516303_20516381 95.65 95.24 90.00 93.75 100.00 100.00 95.65 84.21 97.22 100.00 88.89 96.55 90.91 92.86 92.86 94.12 100.00 90.91 100.00 95.24 91.67 93.75 100.00 96.15 93.33 91.67 94.74 93.33 100.00 100.00 100.00 100.00 94.12 90.48 90.00 100.00 95.45 95.00 100.00 96.77 93.75 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 96.00 92.86 100.00 94.44 95.24 100.00 92.31 100.00 K alternative_last_exon l(3)82Fd,I_chr3R_1122358_1125191,I_chr3R_1131693_1133665,I_chr3R_1147660_1148709 chr3R - chr3R_1122358_1125191 chr3R_1124212_1125191 chr3R_1121869_1122357 chr3R_1123920_1124211 chr3R_1125192_1125291 98.53 98.11 97.73 96.55 97.67 97.37 97.56 98.21 100.00 100.00 97.14 98.86 97.14 96.97 100.00 100.00 100.00 100.00 100.00 98.78 97.50 96.15 98.25 98.41 100.00 97.62 95.12 100.00 100.00 97.92 97.37 100.00 100.00 98.41 100.00 98.04 100.00 100.00 98.53 100.00 100.00 99.07 94.29 100.00 100.00 100.00 95.45 100.00 98.81 97.92 98.04 100.00 96.00 96.77 97.83 96.55 100.00 100.00 K intron_retention I_chr3R_16141663_16144698,CG5077,I_chr3R_16147605_16147670 chr3R + chr3R_16144008_16144698 chr3R_16144007_16144008;chr3R_16144698_16144699 chr3R_16143815_16144007;chr3R_16144699_16144743 85.19 72.73 88.89 81.82 NA 87.50 90.91 77.78 78.95 NA NA 85.71 91.67 92.31 84.62 84.21 90.91 NA 76.92 77.78 NA 90.91 75.00 92.31 NA 78.57 71.43 NA 60.00 90.00 NA NA 63.64 86.36 88.89 90.91 90.00 90.00 NA 71.43 NA 92.86 75.00 72.73 NA 71.43 NA NA 85.19 90.91 92.86 NA NA NA NA 83.33 77.78 100.00 N intron_retention Tsp42Ed chr2R - chr2R_2897868_2897936 chr2R_2897867_2897868;chr2R_2897936_2897937 chr2R_2897838_2897867;chr2R_2897937_2898098 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 65.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 K intron_retention CG3635,I_chr2L_22179420_22179486 chr2L + chr2L_22175603_22179486 chr2L_22175602_22175603;chr2L_22179486_22179487 chr2L_22175591_22175602;chr2L_22179487_22179566 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 91.67 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA NA NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 100.00 K intron_retention CG3091,I_chrX_2147635_2147990 chrX - chrX_2147432_2147483 chrX_2147431_2147432;chrX_2147483_2147484 chrX_2147350_2147431;chrX_2147484_2147634 0.00 0.00 0.00 2.27 0.00 0.00 0.00 2.20 1.96 NA 0.00 9.26 0.00 5.26 3.85 0.00 2.94 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 4.17 NA 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 2.08 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention Nmda1,R_chr2R_8766216_8766562,I_chr2R_8766652_8766956,I_chr2R_8766728_8766791,I_chr2R_8766728_8767623 chr2R - chr2R_8766652_8766956 chr2R_8766651_8766652;chr2R_8766956_8766957 chr2R_8766628_8766651;chr2R_8766957_8766983 72.38 NA 66.67 NA NA NA 90.91 88.89 68.75 NA NA 71.43 NA 80.00 63.64 75.00 NA NA NA 52.94 NA NA 60.00 NA NA NA 90.91 94.74 92.86 NA 58.33 NA NA 73.33 NA NA 60.00 NA NA 90.00 NA NA NA 66.67 NA NA NA NA 73.33 NA NA NA NA NA 58.33 NA NA NA K alternative_acceptor egr,I_chr2R_5970832_5970930,I_chr2R_5970999_5971058 chr2R + chr2R_5970832_5970930;chr2R_5970832_5970908 chr2R_5970832_5970926 chr2R_5970767_5970831;chr2R_5970931_5970998 26.14 29.80 24.79 20.45 27.43 29.75 20.59 23.30 25.21 31.25 30.77 26.60 23.68 24.76 25.68 22.55 28.87 23.81 24.79 24.31 24.55 29.81 26.73 28.57 23.71 21.30 34.44 20.00 27.52 25.89 23.08 24.05 23.33 23.46 26.23 35.04 33.15 30.08 28.19 28.97 20.43 26.89 27.96 26.09 28.57 25.98 26.49 24.74 22.97 32.68 28.80 27.68 29.24 29.05 20.55 26.14 28.26 25.60 K intron_retention pnr,RI_chr3R_11852561_11855192 chr3R + chr3R_11864921_11864991 chr3R_11864920_11864921;chr3R_11864991_11864992 chr3R_11864309_11864920;chr3R_11864992_11865268 20.75 21.79 16.13 21.62 20.75 20.00 22.95 19.74 20.00 18.75 23.91 20.21 31.43 30.95 25.93 16.95 30.77 20.00 21.74 16.67 22.00 14.75 25.32 22.22 26.67 18.75 30.77 43.84 20.59 22.77 21.43 18.33 16.28 17.20 22.22 19.35 22.88 16.44 23.77 18.37 29.55 19.27 28.95 18.99 12.05 28.57 30.99 12.33 15.45 21.18 22.67 20.00 18.57 14.06 21.43 17.98 25.30 10.59 K alternative_acceptor sqh,I_chrX_6118043_6119039,I_chrX_6118150_6118725,I_chrX_6118150_6118729,I_chrX_6118150_6118790,I_chrX_6118150_6118800 chrX - chrX_6118043_6119039 chrX_6118150_6119039 chrX_6119040_6119139;chrX_6117943_6118042 99.86 100.00 100.00 100.00 99.73 99.76 99.83 99.84 99.90 99.63 100.00 99.88 99.71 99.72 99.53 100.00 99.67 100.00 99.77 99.90 99.71 99.12 99.87 99.86 100.00 100.00 99.86 100.00 100.00 100.00 99.79 100.00 99.77 99.85 99.78 99.82 99.88 99.69 100.00 99.89 100.00 99.79 100.00 100.00 100.00 99.86 99.84 99.67 99.89 99.88 99.84 99.77 99.82 99.84 99.79 99.84 99.88 100.00 K jcn_only_AD CG13923,CG12022 chr3L + chr3L_1803324_1803432 chr3L_1803328_1803432 chr3L_1803433_1803567;chr3L_1803322_1803323 100.00 100.00 NA 100.00 NA 100.00 96.77 100.00 98.04 NA NA 97.50 NA 100.00 95.45 NA NA NA 100.00 96.88 NA NA 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.59 95.83 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 97.96 NA 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 97.44 100.00 98.18 K cassette CG32638,I_chrX_13017877_13022283 chrX - chrX_13017721_13020100 chrX_13017721_13017806;chrX_13017877_13020100 chrX_13017807_13017876 chrX_13017225_13017720;chrX_13020101_13020247 99.39 97.22 99.00 100.00 97.75 98.82 98.26 99.39 100.00 100.00 100.00 99.32 100.00 100.00 99.12 100.00 98.84 100.00 100.00 98.99 100.00 100.00 99.24 99.17 100.00 100.00 100.00 100.00 98.00 98.68 98.08 98.15 100.00 100.00 98.61 94.34 99.24 98.91 100.00 100.00 100.00 99.51 100.00 100.00 100.00 100.00 98.02 100.00 98.96 99.15 98.98 100.00 99.14 98.63 100.00 97.96 96.21 99.05 K cassette CG9795,RI_chr3R_149612_150058 chr3R + chr3R_149887_150309 chr3R_149887_150058;chr3R_150233_150309 chr3R_150059_150232 chr3R_149675_149886;chr3R_150310_150390 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 K intron_retention capt,I_chr2L_1156009_1158078,I_chr2L_1153732_1157370,I_chr2L_1163632_1163759 chr2L - chr2L_1152701_1152770 chr2L_1152700_1152701;chr2L_1152770_1152771 chr2L_1152177_1152700;chr2L_1152771_1153318 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.18 0.00 0.00 0.48 0.31 0.56 0.00 0.26 0.37 0.00 0.24 0.00 0.00 0.28 0.20 0.19 0.13 0.27 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.39 K jcn_only_AD CG3829,I_chr2R_20874677_20875710,I_chr2R_20874711_20875717,I_chr2R_20875172_20875710,I_chr2R_20875497_20875710 chr2R + chr2R_20875497_20875710;chr2R_20875172_20875710;chr2R_20874711_20875710 chr2R_20875350_20875710 chr2R_20875711_20875810;chr2R_20874611_20874710 69.23 NA 76.92 76.47 60.00 78.12 69.23 80.95 73.53 NA 64.00 64.58 72.41 87.88 76.47 83.33 77.42 65.85 80.00 70.45 76.19 52.94 NA NA NA 69.23 NA NA 45.45 NA 50.00 NA NA 79.41 NA NA NA NA NA 48.15 NA 64.58 60.00 NA NA 22.73 NA 27.27 70.21 NA NA NA NA NA 60.71 NA NA 40.00 K intron_retention CG1792,pasha chr3R + chr3R_27442244_27442296 chr3R_27442243_27442244;chr3R_27442296_27442297 chr3R_27442056_27442243;chr3R_27442297_27442994 21.67 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA 26.67 NA NA NA 15.38 NA NA NA NA NA NA NA NA NA 38.46 42.86 NA NA NA NA NA NA NA K alternative_acceptor CAP-D2,E_chr3R_25501928_25504637 chr3R + chr3R_25501579_25501620;chr3R_25501579_25501655 chr3R_25501579_25501909 chr3R_25501398_25501578;chr3R_25501910_25501927 0.00 0.00 0.00 1.82 0.00 0.00 2.86 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 1.30 3.85 0.00 1.72 0.00 0.00 0.00 0.00 0.00 2.86 0.00 7.41 0.00 2.00 1.96 0.00 0.00 1.72 0.00 0.00 1.79 5.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Flo-2 chrX + chrX_14818447_14824779;chrX_14818447_14820798;chrX_14818447_14819678 chrX_14818447_14820768 chrX_14818259_14818446 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 2.22 0.00 0.00 0.00 NA 0.00 1.92 0.00 0.00 1.12 0.00 2.56 2.22 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4406 chrX - chrX_1902102_1902161 chrX_1902101_1902102;chrX_1902161_1902162 chrX_1901871_1902101;chrX_1902162_1902322 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 4.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG17002 chr2R + chr2R_2875194_2875291 chr2R_2875194_2875285 chr2R_2875175_2875193;chr2R_2875292_2875770 98.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 97.14 NA NA NA NA NA NA NA NA NA NA 96.88 NA NA NA NA NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention RpS3A,I_chr4_87364_87465,I_chr4_87533_87717,I_chr4_87549_87717,I_chr4_87549_87769 chr4 - chr4_87533_87769 chr4_87532_87533;chr4_87769_87770 chr4_87466_87532;chr4_87770_87817 99.97 99.97 99.98 99.96 99.92 99.98 99.97 99.96 99.95 100.00 99.97 99.98 99.98 100.00 99.98 99.94 100.00 99.97 99.97 99.94 99.97 99.96 99.96 99.96 99.95 99.98 100.00 99.95 100.00 99.86 99.98 99.85 99.96 99.97 99.95 100.00 100.00 99.93 99.97 99.95 100.00 99.99 99.97 100.00 99.85 99.93 99.94 99.91 99.99 99.92 100.00 100.00 99.96 100.00 99.95 100.00 99.95 99.83 K alternative_acceptor tral,I_chr3L_12512171_12512251 chr3L + chr3L_12510160_12510527 chr3L_12510160_12510515 chr3L_12509677_12510159;chr3L_12510528_12511057 8.08 7.02 5.11 18.75 8.33 7.37 8.21 9.15 6.46 11.02 6.19 5.90 8.08 8.70 6.92 10.00 7.95 9.28 8.08 7.69 8.08 15.26 11.54 7.77 16.67 15.22 8.38 15.38 12.57 8.72 7.69 11.57 10.03 5.79 9.55 51.16 12.06 6.88 8.94 8.75 6.90 5.99 5.88 7.82 12.23 7.47 7.80 7.46 5.51 9.50 7.25 10.11 7.23 7.41 7.03 8.86 4.97 6.73 K alternative_acceptor CG6115 chr2L - chr2L_16887672_16887792 chr2L_16887678_16887792 chr2L_16887793_16887941;chr2L_16887122_16887671 99.26 99.16 99.26 99.34 98.72 99.20 97.14 99.37 98.47 100.00 98.65 98.95 98.59 100.00 99.26 99.35 100.00 99.09 100.00 98.24 99.00 98.73 98.94 100.00 100.00 99.12 99.28 96.74 97.40 100.00 99.44 100.00 100.00 99.39 100.00 100.00 98.57 99.18 100.00 100.00 100.00 99.49 98.89 98.20 98.94 99.34 98.82 98.15 99.08 99.20 99.46 98.95 99.28 99.49 100.00 100.00 99.23 98.88 K jcn_only_AA Hlc chrX - chrX_21257309_21257376 chrX_21257319_21257376 chrX_21257377_21257805;chrX_21256593_21257308 100.00 100.00 100.00 100.00 100.00 100.00 99.62 100.00 99.68 100.00 99.12 100.00 100.00 100.00 100.00 99.18 99.18 100.00 99.43 99.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.90 99.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.15 99.61 100.00 99.13 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.91 98.04 100.00 99.25 K alternative_donor noncoding_18164,F_chr3R_17192061_17200781,RI_chr3R_17193489_17193631 chr3R + chr3R_17193416_17193631;chr3R_17193407_17193631 chr3R_17193489_17193631 chr3R_17193632_17193731;chr3R_17193389_17193406 14.91 8.33 17.65 14.81 14.29 21.43 8.33 19.05 15.00 NA NA 11.54 21.43 26.67 8.33 13.04 14.29 20.00 7.14 18.52 9.09 NA 10.00 0.00 NA 15.38 25.00 0.00 14.29 NA 7.02 25.00 16.67 19.05 10.00 10.00 12.50 28.57 9.09 16.00 15.38 19.23 16.67 7.69 27.78 20.83 18.18 20.00 15.38 5.56 14.29 22.22 0.00 20.00 13.33 12.50 8.33 19.23 K alternative_acceptor cwo,noncoding_15870 chr3R + chr3R_6222543_6223088 chr3R_6222543_6223084 chr3R_6222454_6222542;chr3R_6223089_6223406 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 97.37 100.00 100.00 100.00 90.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 K intron_retention l(1)G0222,I_chrX_17473084_17473137 chrX - chrX_17466685_17466742 chrX_17466684_17466685;chrX_17466742_17466743 chrX_17466553_17466684;chrX_17466743_17466876 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17471,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1217104_1217383 chr4_1217103_1217104;chr4_1217383_1217384 chr4_1217009_1217103;chr4_1217384_1217398 34.52 NA NA 50.00 NA NA 43.33 39.39 32.35 NA NA 28.57 26.67 NA NA 38.46 NA NA 35.71 28.57 NA NA NA NA NA NA NA NA NA NA 23.08 NA NA 50.00 NA NA NA NA NA NA NA 30.00 36.36 NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA K multi_cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,RI_chr3R_27801288_27801517,I_chr3R_27801288_27801596 chr3R - chr3R_27784850_27805244 chr3R_27784850_27795477;chr3R_27795508_27798223;chr3R_27798276_27801169;chr3R_27801288_27801517;chr3R_27801688_27805244 chr3R_27795478_27795507;chr3R_27798224_27798275;chr3R_27801170_27801287;chr3R_27801518_27801687 chr3R_27784757_27784849;chr3R_27805245_27805341 56.35 66.67 75.00 87.50 NA 40.00 16.67 45.45 50.00 NA 66.67 77.78 66.67 50.00 60.00 55.56 NA 50.00 50.00 57.14 50.00 NA NA NA NA 40.00 25.00 NA NA NA 75.00 NA 40.00 71.43 NA NA NA NA 66.67 50.00 NA 44.44 66.67 NA NA 100.00 NA 60.00 55.56 NA 66.67 NA NA NA 50.00 NA NA 60.00 K intron_retention APP-BP1 chr3L + chr3L_11093488_11093546 chr3L_11093487_11093488;chr3L_11093546_11093547 chr3L_11093239_11093487;chr3L_11093547_11093705 0.00 0.00 0.00 0.00 0.00 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention srp,R_chr3R_11824572_11825047,I_chr3R_11826508_11826910 chr3R + chr3R_11821447_11825047 chr3R_11821446_11821447;chr3R_11825047_11825048 chr3R_11819864_11821446;chr3R_11825048_11825147 0.80 0.00 0.00 2.27 0.00 1.06 0.00 1.71 1.39 0.83 3.16 2.54 0.00 3.66 2.94 2.02 0.00 2.50 1.04 1.45 0.00 0.39 0.89 0.62 1.61 0.00 1.49 1.00 1.29 0.74 3.45 0.00 0.00 2.45 1.21 0.90 0.84 0.74 0.47 0.00 0.00 0.76 0.00 0.00 1.30 0.00 0.95 0.00 2.54 0.80 0.64 1.63 0.00 0.00 0.87 0.00 0.38 0.00 K cassette RI_chr2R_12912984_12913058,RhoGEF2 chr2R + chr2R_12922514_12924321 chr2R_12922514_12922850;chr2R_12923913_12924321 chr2R_12922851_12923912 chr2R_12922340_12922513;chr2R_12924322_12924406 99.19 98.70 100.00 99.26 98.46 97.14 98.18 99.19 99.47 98.39 97.56 100.00 97.22 98.70 98.77 100.00 98.51 100.00 100.00 99.36 100.00 98.90 99.28 100.00 98.59 97.50 100.00 100.00 100.00 100.00 100.00 100.00 98.74 97.73 97.65 100.00 98.60 98.72 99.17 99.42 100.00 100.00 100.00 97.44 100.00 100.00 97.92 99.38 98.65 98.53 98.21 98.44 100.00 100.00 98.92 100.00 97.30 98.73 K cassette CG6043,I_chr2L_13267973_13268086 chr2L + chr2L_13274851_13275587 chr2L_13274851_13274989;chr2L_13275062_13275587 chr2L_13274990_13275061 chr2L_13274691_13274850;chr2L_13275588_13275628 3.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA K jcn_only_AA CG5872,RI_chr3L_20430213_20430346,RI_chr3L_20430213_20430358 chr3L + chr3L_20430213_20430346;chr3L_20430213_20430358 chr3L_20430213_20430353 chr3L_20430113_20430212;chr3L_20430359_20430446 75.31 NA NA NA NA NA NA NA 68.18 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 75.00 NA NA NA 61.90 NA NA NA NA NA NA NA NA 76.19 NA NA NA 71.43 NA 76.92 80.95 NA NA NA NA NA NA NA NA 75.61 K jcn_only_AD alpha-Adaptin,I_chr2L_413655_413722 chr2L - chr2L_413655_414442 chr2L_413655_413722 chr2L_413555_413654;chr2L_414443_414852 8.52 14.29 3.77 5.81 5.41 14.29 13.58 10.26 12.28 NA 6.00 4.62 25.00 18.92 11.11 25.00 2.17 7.41 6.00 12.50 2.56 NA 6.52 2.44 8.70 5.77 12.20 NA 6.06 7.69 14.29 NA 6.56 7.41 12.12 15.38 12.50 13.51 9.09 7.69 0.00 8.33 10.64 11.43 5.00 2.13 NA 4.65 8.97 NA 12.24 6.45 13.64 NA 6.78 29.17 14.63 4.76 K intron_retention CG9691 chrX + chrX_9778902_9778970 chrX_9778901_9778902;chrX_9778970_9778971 chrX_9778475_9778901;chrX_9778971_9779079 43.16 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 55.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA NA N alternative_acceptor CG2201 chr2L - chr2L_21618111_21623365 chr2L_21623130_21623365 chr2L_21623366_21623540;chr2L_21618011_21618110 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA 0.00 NA 0.00 NA N alternative_donor CG1494 chrX + chrX_21159081_21159147;chrX_21158242_21159147 chrX_21159059_21159147 chrX_21159148_21159527;chrX_21157788_21158241 1.47 1.85 1.47 1.23 1.85 1.85 0.99 0.96 0.67 2.04 2.00 0.89 1.64 1.59 1.32 1.11 1.64 1.67 1.35 0.00 1.75 1.64 1.02 1.43 1.89 1.41 1.28 2.44 2.33 0.00 1.02 0.00 6.94 0.93 2.13 1.96 1.15 1.75 1.32 1.16 0.00 0.75 1.96 1.59 0.00 2.08 2.50 0.00 0.81 2.70 1.19 1.96 2.86 4.00 1.19 2.78 2.78 0.00 K mutually_exclusive Nopp140,I_chr3L_21828330_21828566,I_chr3L_21828986_21829082 chr3L + chr3L_21827930_21828566,chr3L_21828986_21829082 chr3L_21827930_21828173,chr3L_21828330_21829082 chr3L_21828567_21828985 chr3L_21828174_21828329 chr3L_21827465_21827929;chr3L_21829083_21829182 19.20 23.02 19.59 20.98 13.79 19.39 25.00 21.37 16.59 13.30 22.86 16.67 20.97 24.32 16.26 20.51 16.00 19.23 17.65 24.73 16.47 4.98 23.04 19.19 24.39 20.48 31.93 20.17 11.29 14.65 18.18 11.64 10.69 20.00 16.67 22.29 21.28 17.14 19.13 13.12 15.75 16.67 16.85 14.55 15.19 16.67 25.32 10.06 20.18 19.74 21.88 23.08 19.20 26.05 17.50 22.07 30.93 14.45 K intron_retention CG5484 chr3R + chr3R_22543734_22544049 chr3R_22543733_22543734;chr3R_22544049_22544050 chr3R_22543570_22543733;chr3R_22544050_22544588 87.09 87.50 NA NA NA NA NA NA NA NA NA 91.67 NA NA NA 77.78 NA NA NA 92.31 NA 96.77 92.31 80.00 80.00 NA 90.00 80.00 90.00 NA 92.31 NA 100.00 NA NA NA 69.23 70.00 NA 86.67 NA 90.00 NA 88.89 81.82 70.00 NA 100.00 81.82 77.78 80.00 NA NA NA NA NA NA NA K jcn_only_AA fal,I_chr3L_19289660_19290145 chr3L + chr3L_19291320_19291381 chr3L_19291320_19291377 chr3L_19290619_19291319;chr3L_19291382_19291573 98.12 100.00 97.14 100.00 95.83 96.30 98.00 95.16 96.43 100.00 96.88 100.00 97.73 100.00 100.00 98.25 100.00 100.00 100.00 98.80 100.00 100.00 97.73 100.00 94.12 100.00 93.18 NA NA NA 98.41 100.00 NA 97.01 100.00 NA 100.00 100.00 93.94 100.00 95.65 94.52 93.55 93.94 NA 96.77 100.00 100.00 98.63 96.43 100.00 93.02 NA 97.73 93.88 97.62 96.88 92.86 K intron_retention opa1-like,I_chr2R_10119470_10120234,I_chr2R_10121848_10121900,I_chr2R_10122128_10122197,I_chr2R_10122334_10122393 chr2R - chr2R_10119470_10120229 chr2R_10119469_10119470;chr2R_10120229_10120230 chr2R_10119370_10119469;chr2R_10120230_10120408 7.58 7.58 7.27 8.08 7.81 13.04 7.95 8.24 6.21 8.33 7.50 8.57 9.52 10.64 9.46 9.09 5.77 2.94 11.94 7.63 3.92 9.21 8.91 7.29 4.62 3.57 7.46 12.00 7.81 7.02 4.71 11.63 5.77 10.20 4.26 4.17 5.31 8.06 8.51 31.71 3.57 6.30 6.25 6.74 0.00 6.35 6.90 12.50 8.20 6.06 10.31 5.56 11.63 6.82 5.26 5.97 9.33 7.69 K intron_retention RpL22,noncoding_21234 chrX - chrX_658557_658628 chrX_658556_658557;chrX_658628_658629 chrX_658335_658556;chrX_658629_658775 99.84 99.83 99.86 99.90 100.00 99.70 99.82 99.88 99.41 100.00 99.82 99.77 99.80 99.38 99.68 100.00 99.80 99.51 100.00 99.69 99.82 99.57 99.93 99.94 99.68 99.83 100.00 100.00 100.00 99.86 100.00 99.84 99.86 99.90 99.87 98.98 100.00 99.90 99.80 99.68 100.00 99.73 99.84 99.75 99.86 99.63 99.68 99.83 99.71 99.91 99.91 99.83 99.59 99.93 99.87 99.91 99.81 99.89 K intron_retention SelR,I_chr3R_6692390_6692530,I_chr3R_6692461_6692530,I_chr3R_6694098_6694160 chr3R - chr3R_6692416_6692530 chr3R_6692415_6692416;chr3R_6692530_6692531 chr3R_6692361_6692415;chr3R_6692531_6692630 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Flo,I_chr2R_11456012_11456623 chr2R - chr2R_11456332_11456623 chr2R_11456331_11456332;chr2R_11456623_11456624 chr2R_11456256_11456331;chr2R_11456624_11456723 1.32 0.00 0.00 0.00 0.00 1.61 0.00 2.70 3.41 0.00 3.64 4.03 3.92 4.08 0.00 2.02 3.33 0.00 2.74 2.94 0.00 1.32 0.00 0.00 5.26 5.26 3.03 0.00 3.70 2.94 3.85 0.00 2.50 0.83 0.00 5.13 0.00 0.00 0.00 5.06 3.12 1.29 1.75 1.41 0.00 0.00 0.00 10.71 1.32 2.22 0.00 0.00 0.00 0.00 2.20 0.00 1.03 4.17 K jcn_only_AD Gp150,I_chr2R_18205316_18205386,RI_chr2R_18206133_18212679,I_chr2R_18211853_18212679,RI_chr2R_18212600_18212679,I_chr2R_18213233_18213308 chr2R + chr2R_18205243_18212679 chr2R_18205460_18212679 chr2R_18212680_18212779;chr2R_18205216_18205242 99.81 100.00 99.41 99.50 100.00 99.24 98.94 100.00 99.36 100.00 98.75 99.47 100.00 100.00 98.52 99.78 99.51 99.11 99.38 99.83 99.06 99.19 99.72 99.47 99.37 99.72 100.00 99.12 98.36 100.00 99.70 100.00 100.00 100.00 100.00 100.00 99.56 99.05 99.47 100.00 100.00 99.81 100.00 100.00 100.00 100.00 100.00 100.00 99.34 100.00 100.00 100.00 100.00 100.00 99.72 99.14 98.90 100.00 K intron_retention G-salpha60A chr2R + chr2R_19833785_19833960 chr2R_19833784_19833785;chr2R_19833960_19833961 chr2R_19833660_19833784;chr2R_19833961_19833967 0.00 NA NA 0.00 NA NA 4.17 3.33 0.00 NA 0.00 15.38 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 10.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 5.88 NA 0.00 3.23 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 NA 5.88 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 8.00 K alternative_acceptor Doa,I_chr3R_24715823_24718923,I_chr3R_24747391_24747896 chr3R + chr3R_24746992_24747080 chr3R_24746992_24747062 chr3R_24746878_24746991;chr3R_24747081_24747146 6.00 6.00 4.26 5.35 5.69 6.03 4.31 5.16 6.93 5.05 7.07 5.13 5.21 5.15 6.01 6.28 7.50 4.29 6.25 3.50 7.14 8.38 4.60 6.06 5.71 8.50 7.07 7.69 8.57 3.70 5.81 6.67 9.17 4.12 4.08 7.14 7.14 2.53 5.45 6.31 6.25 5.78 7.84 4.49 6.62 6.25 4.60 4.35 6.51 8.11 4.49 2.31 4.81 5.03 4.92 6.04 7.69 6.61 K alternative_acceptor Pka-R2,I_chr2R_5911755_5913333,I_chr2R_5911755_5913354,I_chr2R_5911803_5913333 chr2R - chr2R_5911803_5913333;chr2R_5911755_5913333 chr2R_5911708_5913333 chr2R_5913334_5913352;chr2R_5911703_5911707 40.59 72.73 45.45 33.33 20.00 33.33 35.71 45.00 30.30 57.14 53.85 23.08 14.29 16.67 40.00 41.18 50.00 16.67 50.00 38.89 41.67 50.00 50.00 NA NA 14.29 25.00 NA NA 50.00 47.37 NA NA 35.29 50.00 14.29 61.54 NA 25.00 50.00 NA 42.86 36.36 53.85 NA NA NA 40.00 34.78 NA 50.00 42.86 NA NA 35.71 NA NA NA K jcn_only_AD Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11838972_11839458;chr2R_11838972_11839411 chr2R_11838972_11839376 chr2R_11838888_11838971;chr2R_11839459_11839486 100.00 NA NA NA NA NA NA NA 96.43 NA NA 88.00 NA NA 100.00 NA NA NA NA 92.86 NA 93.33 94.59 100.00 NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 NA NA NA NA 96.43 NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA K intron_retention U2af50,I_chrX_16252240_16252638 chrX - chrX_16251251_16251327 chrX_16251250_16251251;chrX_16251327_16251328 chrX_16250711_16251250;chrX_16251328_16251450 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.41 0.00 0.00 0.53 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD cul-2,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21661637_21662083 chr2L_21662021_21662083 chr2L_21662084_21662183;chr2L_21661537_21661636 2.48 1.89 5.17 4.17 0.00 0.00 3.59 2.53 0.57 7.14 2.44 4.10 22.22 1.56 4.17 3.73 1.59 0.00 0.00 2.40 0.00 5.00 0.70 2.94 3.57 1.67 2.48 3.81 4.76 5.19 0.00 3.92 1.22 0.77 4.17 1.23 7.69 0.00 8.33 8.14 1.11 3.54 1.82 1.89 3.12 5.38 5.77 1.08 3.64 6.58 4.40 1.59 0.00 2.27 1.59 3.39 0.00 0.00 K alternative_donor CG17233,RI_chr3L_20232898_20232962 chr3L - chr3L_20231011_20232962 chr3L_20231011_20231837 chr3L_20229534_20231010;chr3L_20232963_20233016 88.57 83.33 88.57 88.10 89.29 86.67 83.78 80.43 87.32 70.00 87.50 87.10 74.07 88.00 97.06 90.32 95.83 96.67 90.48 89.29 95.24 76.67 89.55 81.82 87.50 92.31 85.71 69.23 78.38 82.61 92.31 93.55 87.50 82.69 86.84 92.68 91.36 93.62 90.41 82.35 79.41 93.85 91.67 94.12 92.00 83.72 90.91 90.38 89.66 91.49 89.66 87.10 90.91 87.80 87.18 94.44 94.87 80.70 K alternative_donor alpha-Man-I,I_chrX_10218352_10219759,I_chrX_10218390_10219759 chrX - chrX_10218390_10219816;chrX_10218390_10219823;chrX_10218390_10219708;chrX_10218390_10219846 chrX_10218390_10219759 chrX_10218290_10218389;chrX_10219847_10219859 22.65 20.00 NA 25.00 NA 28.57 33.33 25.00 23.08 NA 16.67 26.67 22.22 14.29 22.22 25.00 33.33 14.29 16.67 30.00 NA 20.00 0.00 16.67 NA 42.86 42.86 NA NA 33.33 20.00 NA 40.00 36.36 20.00 25.00 NA NA 16.67 25.00 NA 22.22 28.57 NA NA 16.67 NA 20.00 30.77 NA 50.00 20.00 20.00 NA 22.22 NA 25.00 16.67 K intron_retention B52,E_chr3R_9488770_9491174 chr3R + chr3R_9487155_9487227 chr3R_9487154_9487155;chr3R_9487227_9487228 chr3R_9487148_9487154;chr3R_9487228_9487314 55.00 NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA 50.00 NA 35.29 NA NA NA NA NA NA 75.00 NA NA NA 72.73 NA NA 66.67 NA NA NA 33.33 50.00 70.00 NA NA NA 36.36 NA 61.11 72.73 NA NA NA NA 50.00 NA NA NA 44.44 K intron_retention SmG chrX - chrX_16534064_16534128 chrX_16534063_16534064;chrX_16534128_16534129 chrX_16533995_16534063;chrX_16534129_16534194 90.00 NA NA 90.00 NA 88.89 92.86 76.92 88.89 NA NA 80.00 NA NA 87.50 100.00 NA NA NA 78.95 NA NA 91.67 85.71 94.44 93.75 100.00 90.00 100.00 75.00 NA 71.43 90.00 90.00 90.91 91.67 NA NA 87.50 86.67 97.06 90.91 NA NA 88.89 80.77 88.89 50.00 91.67 78.57 100.00 90.00 94.44 94.44 NA 90.91 93.33 84.62 N jcn_only_AA CG11200 chr2R - chr2R_16194142_16196065 chr2R_16196005_16196065 chr2R_16196066_16196078 11.77 NA 0.00 5.13 NA NA NA 5.56 15.62 NA NA 12.24 23.81 17.24 5.00 14.29 NA NA 11.11 13.21 NA NA NA 7.41 NA 13.16 4.00 NA NA NA 4.76 NA NA 6.25 NA NA NA NA 15.00 12.00 NA 12.50 NA NA NA 14.81 NA 3.33 8.51 9.68 11.54 14.29 NA NA 20.69 15.38 NA 10.00 N alternative_donor kat80,I_chrX_16162233_16162306,I_chrX_16168725_16169287 chrX - chrX_16168725_16169565;chrX_16168725_16169287 chrX_16168725_16169347 chrX_16168625_16168724;chrX_16169566_16169786 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 5.26 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K alternative_acceptor Cp190,I_chr3R_11100788_11100846,F_chr3R_11104164_11104239 chr3R - chr3R_11100788_11100846;chr3R_11100334_11100846 chr3R_11100321_11100846 chr3R_11100847_11100931;chr3R_11099837_11100320 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 K jcn_only_AA Tsp97E chr3R - chr3R_22789207_22790364 chr3R_22790008_22790364 chr3R_22790365_22790433 100.00 100.00 100.00 98.33 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA K intron_retention I_chr3L_17833072_17833135,CG5567 chr3L - chr3L_17835658_17836374 chr3L_17835657_17835658;chr3L_17836374_17836375 chr3L_17835458_17835657;chr3L_17836375_17836617 4.09 6.45 0.00 0.00 8.70 0.00 5.71 5.13 5.26 0.00 0.00 3.92 0.00 0.00 0.00 9.09 0.00 4.35 10.00 1.89 0.00 10.53 4.26 0.00 NA 8.00 7.69 6.67 0.00 0.00 9.52 0.00 0.00 5.41 11.76 3.45 0.00 0.00 2.94 0.00 0.00 8.00 0.00 0.00 0.00 6.67 12.50 0.00 3.92 16.67 5.26 4.35 6.67 6.67 9.09 13.04 12.20 5.88 K alternative_acceptor CG11006,F_chr3L_12799159_12799339 chr3L + chr3L_12799438_12799952;chr3L_12799438_12800192;chr3L_12799438_12799955;chr3L_12799438_12799967 chr3L_12799438_12800078 chr3L_12799340_12799437;chr3L_12800193_12800930 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA 0.00 NA 14.58 6.67 0.00 0.00 NA NA 7.14 0.00 0.00 NA NA 1.72 NA 0.00 0.00 8.33 0.00 3.85 4.08 0.00 0.00 NA 0.00 3.23 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA 0.00 K intron_retention CG1407,RI_chr2R_5918952_5919093 chr2R - chr2R_5919631_5919718 chr2R_5919630_5919631;chr2R_5919718_5919719 chr2R_5919524_5919630;chr2R_5919719_5919840 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 1.97 1.28 0.00 4.60 2.44 2.53 3.33 0.00 0.00 2.27 0.00 0.00 0.00 0.00 2.04 0.00 1.20 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RhoGAP92B chr3R + chr3R_15731610_15734155 chr3R_15731609_15731610;chr3R_15734155_15734156 chr3R_15731353_15731609;chr3R_15734156_15734331 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 1.72 0.00 3.36 0.53 0.00 0.00 0.00 0.00 1.20 0.00 1.01 0.00 0.00 0.00 0.00 1.30 0.93 0.00 0.00 1.06 0.00 0.00 2.20 0.00 1.69 0.00 1.22 0.00 0.00 0.64 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 K intron_retention 14-3-3zeta,I_chr2R_5987356_5991764,I_chr2R_5993610_5993957,I_chr2R_5993331_5994971 chr2R + chr2R_5993331_5993793 chr2R_5993330_5993331;chr2R_5993793_5993794 chr2R_5993231_5993330;chr2R_5993794_5993825 15.45 4.32 6.00 18.49 9.23 11.54 15.52 14.89 10.00 NA 7.50 17.98 19.15 14.55 10.42 17.53 11.59 5.56 11.39 28.00 5.13 15.38 33.33 30.00 9.68 2.25 55.00 50.00 37.50 50.00 14.29 46.15 42.11 9.63 40.00 38.46 42.86 3.42 33.33 28.26 22.73 10.78 13.21 5.41 26.32 32.00 25.93 46.67 9.92 18.52 12.07 11.86 26.67 11.43 11.94 3.70 18.75 30.30 K intron_retention CG15547,I_chr3R_26712627_26714606,RI_chr3R_26713323_26714382 chr3R - chr3R_26708794_26708849 chr3R_26708793_26708794;chr3R_26708849_26708850 chr3R_26708734_26708793;chr3R_26708850_26709639 18.65 20.00 10.87 28.57 29.17 31.03 13.43 24.07 14.86 21.88 20.83 7.84 18.42 9.52 30.77 23.33 28.95 19.23 17.39 24.00 7.14 18.87 19.51 9.09 31.58 NA 40.91 50.00 12.50 21.43 12.26 29.87 21.21 14.67 25.93 24.14 12.50 20.00 7.69 8.33 17.31 12.79 21.05 9.09 8.33 17.50 7.27 21.05 19.67 17.78 20.59 5.88 6.90 14.29 22.45 16.67 13.33 8.97 K intron_retention Pgi,I_chr2R_4801076_4801329 chr2R - chr2R_4801076_4801214 chr2R_4801075_4801076;chr2R_4801214_4801215 chr2R_4800976_4801075;chr2R_4801215_4801631 99.00 98.92 98.55 100.00 94.00 98.59 100.00 97.73 99.26 98.77 100.00 100.00 100.00 98.25 98.88 98.41 100.00 98.44 100.00 98.31 100.00 96.19 99.36 99.27 99.00 100.00 99.24 95.70 100.00 100.00 100.00 98.59 96.49 98.94 98.97 93.69 99.17 99.02 100.00 98.20 97.14 97.89 100.00 99.04 97.75 99.13 98.94 98.29 99.06 99.24 99.29 98.80 98.39 98.97 100.00 98.91 100.00 100.00 K alternative_acceptor l(2)05714,I_chr2L_4970785_4973718,RI_chr2L_4971343_4973718,CG8892 chr2L - chr2L_4971323_4973718 chr2L_4971454_4973718 chr2L_4973719_4973787;chr2L_4971243_4971322 91.67 57.14 70.00 100.00 NA NA 100.00 92.31 77.78 NA NA 100.00 100.00 100.00 85.71 94.12 NA 85.71 100.00 92.86 87.50 100.00 90.00 87.50 83.33 87.50 88.89 100.00 NA 80.00 91.67 NA NA 78.57 87.50 NA 100.00 100.00 100.00 80.00 NA 90.00 100.00 66.67 NA 100.00 100.00 NA 94.12 100.00 83.33 80.00 100.00 87.50 87.50 90.91 100.00 100.00 K alternative_acceptor CG5703 chrX + chrX_17526494_17526622 chrX_17526494_17526601 chrX_17526344_17526493;chrX_17526623_17527141 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.62 0.00 1.92 0.00 0.00 0.00 0.79 0.00 0.00 1.47 1.37 0.48 0.00 0.00 0.00 0.00 1.19 0.00 1.89 0.00 3.03 0.00 1.27 1.41 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 1.41 0.00 0.00 0.00 0.00 1.45 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 K intron_retention Arc-p34 chr2L + chr2L_20420413_20420489 chr2L_20420412_20420413;chr2L_20420489_20420490 chr2L_20420319_20420412;chr2L_20420490_20420589 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG11486,RE_chr3L_3084894_3085203 chr3L + chr3L_3071298_3073080;chr3L_3071190_3073080 chr3L_3071308_3073080 chr3L_3073081_3073149;chr3L_3071183_3071189 21.43 NA NA NA NA NA NA 26.92 NA NA NA 40.91 NA NA NA 8.11 NA NA NA 5.13 NA NA NA NA NA NA NA NA NA NA NA NA NA 21.43 NA NA NA NA NA NA NA 23.81 NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA NA NA K intron_retention CG4287,CG32856,mor chr3R - chr3R_11789268_11789320 chr3R_11789267_11789268;chr3R_11789320_11789321 chr3R_11787896_11789267;chr3R_11789321_11789576 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 6.06 0.00 0.00 0.00 0.00 2.44 0.00 3.85 10.00 16.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.90 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 3.45 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K intron_retention betaggt-I,I_chr2L_4946222_4946668 chr2L + chr2L_4945682_4945901 chr2L_4945681_4945682;chr2L_4945901_4945902 chr2L_4945582_4945681;chr2L_4945902_4946013 0.00 0.00 0.00 1.67 0.00 0.00 0.00 5.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 1.89 0.00 2.00 0.00 0.00 0.00 0.00 9.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 8.33 0.85 1.75 7.69 0.00 10.53 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 2.94 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG6782,CG6783 chr3R - chr3R_7390834_7392639 chr3R_7390833_7390834;chr3R_7392639_7392640 chr3R_7390506_7390833;chr3R_7392640_7392746 63.64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 63.64 NA NA 64.71 53.85 NA NA NA NA NA 66.67 16.67 NA NA NA NA NA 63.64 NA NA 76.92 NA NA NA 46.67 NA 61.54 88.89 NA NA 58.33 71.43 NA NA NA NA NA NA NA K intron_retention SCAP,CG14591 chr2R - chr2R_1919787_1919851 chr2R_1919786_1919787;chr2R_1919851_1919852 chr2R_1919603_1919786;chr2R_1919852_1920226 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9006273_9007675 chrX_9006273_9006782;chrX_9006801_9007675 chrX_9006783_9006800 chrX_9006196_9006272;chrX_9007676_9007775 2.44 1.59 0.00 3.33 5.36 3.45 0.97 0.00 1.76 1.92 1.61 5.21 3.51 1.82 1.64 2.70 1.96 0.00 3.03 1.69 3.39 4.67 2.86 4.40 0.00 0.00 1.28 3.23 1.82 1.33 3.12 3.57 3.64 1.12 4.65 3.64 1.38 2.20 2.17 2.50 2.22 3.54 1.75 2.35 3.57 5.00 4.00 2.22 1.00 5.17 4.21 5.66 3.23 2.44 3.90 1.79 1.82 4.35 K intron_retention Tsp97E chr3R - chr3R_22789243_22789839 chr3R_22789242_22789243;chr3R_22789839_22789840 chr3R_22788880_22789242;chr3R_22789840_22790007 0.76 4.84 3.39 2.80 0.00 0.00 1.03 1.98 0.76 0.00 0.00 0.00 0.00 0.00 2.35 1.47 0.00 0.00 3.33 0.63 0.00 3.85 4.26 0.00 0.00 0.00 9.28 11.76 2.30 0.00 3.61 2.11 0.00 2.33 0.00 1.23 2.33 0.00 2.50 1.49 2.04 3.57 0.00 0.00 1.00 2.38 0.00 0.00 4.46 0.00 5.06 0.00 0.00 0.00 1.32 3.33 0.00 0.00 K alternative_donor Nhe2,I_chr2L_21122390_21122912 chr2L + chr2L_21124522_21125316 chr2L_21124615_21125316 chr2L_21125317_21125329;chr2L_21124443_21124521 4.76 4.55 0.00 15.79 0.00 NA 11.76 12.00 6.98 NA 20.00 1.64 13.64 4.35 0.00 0.00 6.67 NA 3.45 2.70 NA 8.33 4.17 5.56 5.56 7.41 9.09 9.09 0.00 4.76 0.00 NA 0.00 0.00 NA 7.41 4.76 0.00 3.57 8.00 NA 2.70 NA 6.67 8.33 7.69 0.00 0.00 6.25 NA 0.00 NA NA NA 5.88 NA NA NA K intron_retention stc chr2L + chr2L_15117492_15117553 chr2L_15117491_15117492;chr2L_15117553_15117554 chr2L_15117140_15117491;chr2L_15117554_15117669 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.53 0.00 0.00 1.06 2.10 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753;chr2R_2814327_2817753 chr2R_2814327_2816013,chr2R_2813804_2816013;chr2R_2816342_2817753 chr2R_2816014_2816341 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 100.00 100.00 99.03 100.00 99.26 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 100.00 100.00 99.32 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.10 100.00 100.00 100.00 100.00 K intron_retention Rab14,I_chr2L_14357104_14357340 chr2L + chr2L_14357701_14357754 chr2L_14357700_14357701;chr2L_14357754_14357755 chr2L_14357632_14357700;chr2L_14357755_14357843 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 2.04 4.72 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 K intron_retention I_chrX_16266436_16268958,Fur2,I_chrX_16267221_16268573,I_chrX_16267868_16268958,RI_chrX_16267905_16268958,I_chrX_16270205_16270272,I_chrX_16274795_16274867 chrX + chrX_16267208_16268958 chrX_16267207_16267208;chrX_16268958_16268959 chrX_16267150_16267207;chrX_16268959_16269058 39.89 NA NA NA NA NA 33.33 23.08 30.43 NA NA 46.15 NA NA NA 41.67 NA NA NA 45.00 NA 38.10 NA NA NA NA NA NA NA NA NA NA NA 31.25 NA NA NA NA NA NA NA 53.33 NA NA NA NA NA NA 42.86 NA NA NA NA NA NA NA NA NA K alternative_donor CG34413,RI_chr2R_20769295_20770153,I_chr2R_20771136_20772048,I_chr2R_20773500_20774745 chr2R + chr2R_20769150_20770153;chr2R_20769206_20770153;chr2R_20769295_20770153 chr2R_20769471_20770153 chr2R_20770154_20770253;chr2R_20769141_20769149 6.67 3.17 4.41 7.14 3.49 4.49 11.39 11.54 6.21 6.52 3.39 6.59 3.64 5.97 4.71 15.09 3.70 7.81 6.35 7.00 4.76 41.07 10.53 4.82 5.45 5.80 17.19 7.50 15.38 12.90 5.06 25.00 22.86 5.88 11.54 26.09 4.46 6.67 3.85 7.96 16.67 4.68 3.51 6.25 7.41 8.70 3.70 9.68 6.16 6.67 15.09 3.92 7.69 6.67 3.85 8.11 7.69 16.67 K intron_retention Roc1a chrX + chrX_541559_541642 chrX_541558_541559;chrX_541642_541643 chrX_541253_541558;chrX_541643_541670 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.00 2.27 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17399683_17403392;chr2R_17399683_17403481;chr2R_17399683_17401713 chr2R_17399683_17401733 chr2R_17399598_17399682;chr2R_17403482_17403550 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon CG32521,I_chrX_21077138_21082106,I_chrX_21077612_21082713,EI_chrX_21080561_21082106,I_chrX_21080906_21082713,CREF_chrX_21082827_21152068,EF_chrX_21094675_21152068 chrX - chrX_21080561_21082106;chrX_21077612_21082106 chrX_21080906_21082106 chrX_21076245_21077611 chrX_21080124_21080905 chrX_21082107_21082206 7.72 7.51 10.30 2.06 7.69 6.19 19.59 4.42 8.02 6.99 9.82 11.55 2.63 8.72 8.16 7.47 6.06 18.66 7.51 5.61 17.24 8.87 9.26 10.18 7.59 4.62 7.72 21.45 12.77 8.40 6.44 5.85 6.86 8.96 9.36 7.51 10.81 12.50 10.39 8.97 3.99 8.09 7.69 9.83 7.09 4.81 3.77 9.13 8.09 5.54 8.09 10.05 6.34 4.11 10.25 5.90 5.30 4.80 K intron_retention wapl,Cyp4d1 chrX - chrX_2045496_2045555 chrX_2045495_2045496;chrX_2045555_2045556 chrX_2045305_2045495;chrX_2045556_2045644 4.00 0.00 0.00 0.00 10.00 8.70 0.00 8.00 10.81 NA NA 11.76 4.76 5.88 7.41 4.35 6.67 0.00 0.00 4.44 6.67 4.76 3.57 4.35 0.00 0.00 0.00 5.00 6.67 4.35 0.00 0.00 10.00 10.34 14.29 4.76 8.11 0.00 6.67 9.38 0.00 0.00 0.00 0.00 0.00 4.88 0.00 4.00 4.65 3.33 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 K jcn_only_AD gpp,I_chr3R_2271795_2272181 chr3R + chr3R_2232800_2233199 chr3R_2232814_2233199 chr3R_2233200_2233496;chr3R_2232745_2232799 93.22 NA NA 89.58 NA NA 96.67 96.15 91.46 NA NA 91.43 97.62 100.00 NA 91.18 87.50 NA 93.55 92.31 NA 95.24 94.44 NA NA NA 84.00 NA NA 96.30 NA NA 89.66 95.56 NA 90.91 NA NA NA 97.30 NA 94.00 88.46 NA NA NA NA 97.14 93.22 NA 92.59 95.00 NA NA 92.59 NA NA 90.91 K alternative_donor Orc2 chr3R + chr3R_9791304_9791371 chr3R_9791308_9791371 chr3R_9791372_9792217;chr3R_9790714_9791303 0.00 0.00 0.00 4.55 0.00 0.00 5.00 0.00 2.94 NA 0.00 3.23 NA 0.00 3.23 0.00 0.00 3.70 0.00 0.00 0.00 NA 3.85 5.56 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.45 3.33 NA 4.17 0.00 0.00 3.57 4.55 NA 0.00 2.56 4.17 0.00 0.00 0.00 NA 3.03 0.00 0.00 0.00 K intron_retention CG9945,CG16742 chr2R + chr2R_16508050_16508112 chr2R_16508049_16508050;chr2R_16508112_16508113 chr2R_16507943_16508049;chr2R_16508113_16508255 0.00 2.78 0.00 7.69 NA 0.00 4.76 0.00 7.27 5.56 9.09 0.00 0.00 0.00 3.45 6.67 0.00 0.00 0.00 6.45 0.00 0.00 0.00 0.00 0.00 0.00 6.67 7.32 7.27 0.00 0.00 2.63 4.17 3.85 0.00 0.00 4.76 0.00 2.56 0.00 0.00 0.00 0.00 1.89 6.06 11.36 0.00 0.00 5.71 4.35 0.00 0.00 0.00 0.00 8.00 0.00 13.51 0.00 K jcn_only_AA CG17665 chr2R - chr2R_123842_123917 chr2R_123868_123917 chr2R_123918_124062;chr2R_123742_123841 96.00 92.31 96.15 94.37 100.00 95.65 94.37 93.65 96.43 NA 96.00 98.08 97.37 100.00 95.00 96.36 97.56 88.89 92.45 97.96 100.00 95.83 97.67 90.32 96.88 100.00 92.50 96.67 NA 100.00 98.00 NA NA 98.51 100.00 92.86 98.04 96.00 95.65 98.15 100.00 89.55 96.30 97.78 NA 94.44 93.18 NA 92.98 90.24 86.00 100.00 92.00 92.31 93.33 95.83 89.29 100.00 K cassette Liprin-alpha chr2L + chr2L_6724085_6724826 chr2L_6724085_6724177;chr2L_6724394_6724826 chr2L_6724178_6724393 chr2L_6723995_6724084;chr2L_6724827_6725096 8.82 9.68 7.41 11.11 NA 13.64 16.00 7.41 9.43 2.38 11.11 7.89 18.18 8.70 13.64 9.09 18.18 6.67 10.53 6.52 NA 19.05 5.56 6.25 12.50 15.00 19.05 13.04 9.52 12.90 15.00 6.25 6.15 7.32 3.85 8.82 10.29 9.09 6.12 5.97 6.67 7.41 NA 12.00 8.70 4.35 11.76 3.75 7.32 NA 10.81 8.33 18.18 7.69 9.52 7.69 8.33 3.45 K jcn_only_AA Src42A chr2R + chr2R_1898274_1898445 chr2R_1898274_1898436 chr2R_1898115_1898273;chr2R_1898446_1898614 84.09 83.72 80.68 87.03 79.37 89.41 65.31 85.33 89.35 90.38 80.00 83.80 76.32 84.42 89.42 85.44 79.55 86.42 79.12 83.49 83.33 81.48 88.39 88.30 75.00 83.76 78.31 100.00 84.09 87.88 84.44 72.34 87.50 89.51 77.59 88.71 83.91 90.32 80.65 83.65 83.72 83.59 85.90 82.76 90.74 90.48 85.39 98.04 82.96 88.75 86.67 87.50 79.63 81.25 81.13 84.93 83.61 86.44 K intron_retention Pak,RI_chr3R_2181143_2181934 chr3R + chr3R_2179973_2180635 chr3R_2179972_2179973;chr3R_2180635_2180636 chr3R_2179830_2179972;chr3R_2180636_2180902 40.06 NA NA 46.15 NA NA NA NA 64.29 NA NA 46.67 NA NA NA 30.77 NA NA NA 35.71 NA 43.48 50.00 35.71 NA NA NA 38.46 NA NA NA NA 35.71 60.00 45.45 70.00 NA NA NA NA NA 36.84 NA 25.00 NA NA NA NA 41.67 NA 60.00 NA 16.67 NA NA NA 25.00 13.33 K alternative_last_exon Bet3,Nf-YA chr3L - chr3L_9432661_9435223 chr3L_9435067_9435223 chr3L_9432250_9432660 chr3L_9433156_9435066 chr3L_9435224_9435352 53.73 50.94 50.65 53.40 50.75 45.83 46.75 47.83 54.61 59.52 80.85 49.26 42.42 56.86 54.43 65.62 49.09 62.50 56.60 44.44 70.00 73.73 55.22 56.14 39.29 34.29 40.91 66.22 73.33 59.55 50.75 52.56 75.19 53.12 55.56 47.06 56.71 56.88 54.05 58.82 52.17 50.32 58.70 56.25 66.37 58.65 50.50 68.18 53.73 46.84 48.18 57.89 53.19 48.91 48.65 53.85 44.80 53.66 N intron_retention CG7777,I_chr2R_7323928_7328572 chr2R + chr2R_7327836_7329439 chr2R_7327835_7327836;chr2R_7329439_7329440 chr2R_7327692_7327835;chr2R_7329440_7329695 6.67 NA NA 0.00 NA NA 6.67 NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Shawn_Tyler,MKP-4 chrX + chrX_19517388_19517449 chrX_19517387_19517388;chrX_19517449_19517450 chrX_19517138_19517387;chrX_19517450_19517581 0.00 0.00 0.00 3.57 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 2.13 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 1.89 0.00 0.00 4.55 0.00 0.00 0.00 0.00 N alternative_donor Lag1,RI_chrX_6153758_6153930,I_chrX_6153758_6155077,RI_chrX_6153758_6161036,I_chrX_6160907_6161036 chrX - chrX_6153758_6155077;chrX_6153758_6154631;chrX_6153758_6153930;chrX_6153758_6161036;chrX_6153758_6154193;chrX_6153758_6154358 chrX_6153758_6160439 chrX_6153658_6153757;chrX_6161037_6161136 86.54 84.49 87.08 87.25 85.96 85.94 88.18 87.74 88.18 86.54 85.92 87.47 88.58 87.92 87.34 86.29 88.27 87.21 87.34 86.64 89.50 83.76 88.34 86.98 85.42 84.46 85.29 80.69 76.47 87.69 84.33 80.63 86.30 88.06 86.92 87.10 84.74 83.26 81.52 87.16 83.62 86.67 87.69 87.26 76.47 82.03 81.56 87.50 88.84 82.77 88.18 86.47 82.14 77.53 87.60 79.43 75.93 84.10 K alternative_acceptor CG31600 chr2L - chr2L_21914952_21915015 chr2L_21914967_21915015 chr2L_21915016_21915168;chr2L_21914802_21914951 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG10289,I_chr3L_6163043_6163216 chr3L - chr3L_6163028_6163216 chr3L_6163043_6163216 chr3L_6163217_6163316;chr3L_6162943_6163027 0.00 1.37 0.00 0.79 0.00 0.00 0.90 0.00 1.23 0.00 0.00 0.00 0.00 0.00 1.37 0.00 1.56 0.00 0.00 0.00 0.00 0.00 1.11 1.32 0.00 0.00 2.04 4.17 0.00 0.00 2.35 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 1.46 0.00 1.80 0.00 1.19 1.32 0.00 2.70 0.00 0.00 0.00 0.00 0.00 2.15 0.00 1.59 0.00 K jcn_only_AD Nedd4,I_chr3L_17526753_17527450,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17526749_17527450;chr3L_17526950_17527450 chr3L_17526753_17527450 chr3L_17527451_17527550;chr3L_17526708_17526748 12.50 NA 12.50 3.70 NA 38.10 18.52 17.65 17.65 NA NA 23.08 4.35 NA 4.76 9.68 NA 14.81 7.41 7.69 13.64 NA 12.20 NA 19.44 10.71 28.57 NA 35.00 NA 20.00 NA NA 13.51 NA NA NA NA 12.50 NA NA 17.24 5.00 15.00 NA 8.33 NA 8.82 8.77 NA 7.41 12.00 NA NA 10.71 NA NA 13.04 K intron_retention CG15012 chr3L - chr3L_4291817_4291874 chr3L_4291816_4291817;chr3L_4291874_4291875 chr3L_4291687_4291816;chr3L_4291875_4291964 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 1.54 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.65 1.20 2.99 0.00 0.00 0.00 0.00 0.71 1.52 0.00 3.88 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 K alternative_donor CG41265,I_chr2RHet_569340_569401 chr2RHet + chr2RHet_565791_569401 chr2RHet_569340_569401 chr2RHet_569402_569411;chr2RHet_565675_565790 66.67 100.00 50.00 40.00 100.00 100.00 40.00 30.00 44.44 50.00 100.00 100.00 50.00 66.67 100.00 50.00 50.00 100.00 50.00 60.00 50.00 100.00 50.00 100.00 100.00 100.00 33.33 100.00 100.00 100.00 50.00 100.00 50.00 40.00 100.00 100.00 50.00 50.00 100.00 66.67 100.00 40.00 100.00 50.00 100.00 33.33 50.00 100.00 75.00 50.00 100.00 50.00 100.00 NA 66.67 50.00 50.00 100.00 K intron_retention I_chr2R_4783150_4783708,Ggamma1,noncoding_5300 chr2R + chr2R_4789783_4789847 chr2R_4789782_4789783;chr2R_4789847_4789848 chr2R_4789746_4789782;chr2R_4789848_4790635 98.20 98.09 97.40 99.52 98.99 97.33 97.31 95.70 98.50 100.00 97.37 96.45 99.35 99.27 98.20 98.91 98.88 99.03 97.67 98.52 96.30 97.56 100.00 99.11 97.70 99.36 98.84 98.28 98.92 98.67 98.16 97.92 99.13 96.91 99.01 100.00 96.85 98.08 98.86 96.92 98.90 97.84 99.03 95.21 98.29 98.03 96.50 98.65 96.88 97.25 96.89 98.63 99.07 98.71 97.45 96.95 97.89 97.06 N cassette aru,I_chr2L_864795_867505 chr2L - chr2L_864795_865826 chr2L_864795_864876;chr2L_865061_865826 chr2L_864877_865060 chr2L_864695_864794;chr2L_865827_865847 100.00 100.00 100.00 79.07 100.00 100.00 100.00 100.00 78.08 100.00 15.52 100.00 100.00 100.00 100.00 100.00 100.00 43.90 100.00 82.22 26.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 46.51 61.54 100.00 60.00 42.50 81.82 100.00 100.00 100.00 100.00 57.89 66.67 100.00 65.08 100.00 100.00 47.37 71.88 100.00 61.70 80.95 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 56.41 K intron_retention l(2)35Di,RI_chr2L_15750643_15750721 chr2L - chr2L_15750652_15750721 chr2L_15750651_15750652;chr2L_15750721_15750722 chr2L_15750550_15750651;chr2L_15750722_15750821 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00 0.66 0.00 0.00 1.69 2.41 1.30 0.00 0.00 1.35 1.22 1.47 1.38 0.00 7.55 1.19 6.57 6.06 2.04 0.00 3.81 0.00 0.85 1.50 0.00 1.19 0.00 0.00 0.00 0.00 5.88 1.16 0.00 0.00 0.00 0.97 0.00 0.00 1.36 0.79 0.00 0.00 0.81 0.61 0.00 0.60 0.52 0.63 K alternative_donor SD23414,CG9132,I_chrX_16693612_16694097,I_chrX_16693612_16694529,CG9125,I_chrX_16696492_16696589 chrX - chrX_16693612_16694097;chrX_16693612_16694558 chrX_16693612_16696171 chrX_16693512_16693611;chrX_16696172_16696233 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Syb chr2R - chr2R_6137333_6138383 chr2R_6137333_6137873;chr2R_6138092_6138383 chr2R_6137874_6138091 chr2R_6137005_6137332;chr2R_6138384_6138649 6.03 5.88 7.34 34.58 4.31 3.97 3.11 13.22 6.78 5.33 26.48 5.48 14.05 7.34 7.08 14.23 7.92 9.70 9.22 6.88 21.72 3.79 5.68 5.26 4.82 6.99 6.46 10.66 3.88 5.66 8.93 6.93 7.31 8.73 6.03 2.56 4.38 3.00 4.25 6.51 5.73 5.95 8.23 5.47 6.66 8.28 3.89 11.87 5.69 5.54 6.35 5.70 2.20 4.49 6.91 4.58 2.67 5.03 K jcn_only_AD Mct1 chrX + chrX_2089073_2092664;chrX_2088826_2092664 chrX_2089096_2092664 chrX_2092665_2092972;chrX_2088634_2088825 3.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.33 NA NA NA 3.57 0.00 NA NA NA NA NA 0.00 NA NA NA 2.27 NA NA NA NA NA NA 8.70 NA K jcn_only_AD CG9588,omd chr3R - chr3R_9501459_9501552 chr3R_9501459_9501522 chr3R_9500847_9501458;chr3R_9501553_9501849 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.61 100.00 100.00 95.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.15 100.00 98.65 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Bub1 chr2L + chr2L_5280272_5280327 chr2L_5280271_5280272;chr2L_5280327_5280328 chr2L_5278956_5280271;chr2L_5280328_5281989 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 NA 22.50 15.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 K intron_retention CG42540,C_chr3L_4563905_4578759 chr3L + chr3L_4586784_4588068 chr3L_4586783_4586784;chr3L_4588068_4588069 chr3L_4586627_4586783;chr3L_4588069_4588097 21.88 NA NA 21.88 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention eIF-4a,I_chr2L_5985221_5985289 chr2L + chr2L_5984625_5984718 chr2L_5984624_5984625;chr2L_5984718_5984719 chr2L_5984011_5984624;chr2L_5984719_5984942 0.00 0.00 0.00 0.01 0.00 0.00 0.02 0.04 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.04 0.00 0.00 0.00 0.00 0.03 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD Idgf2 chr2L + chr2L_16449744_16449802 chr2L_16449748_16449802 chr2L_16449803_16449871;chr2L_16449665_16449743 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4833364_4834454;chrX_4833234_4834454;chrX_4833203_4834454;chrX_4833308_4834454 chrX_4833338_4834454 chrX_4834455_4834880;chrX_4833197_4833202 11.11 16.67 0.00 6.67 20.00 NA 11.11 6.25 8.82 12.50 NA 6.67 27.27 22.22 0.00 25.00 18.18 0.00 14.29 15.00 NA 0.00 NA NA NA NA NA NA NA 11.11 27.27 NA 5.56 15.79 NA NA 0.00 NA NA 0.00 33.33 5.88 28.57 NA NA NA NA 25.00 5.56 NA NA NA NA NA 0.00 NA NA NA K alternative_donor Dp,I_chr2R_9111166_9112971,REI_chr2R_9113257_9113316 chr2R + chr2R_9112640_9112971;chr2R_9112663_9112971 chr2R_9112646_9112971 chr2R_9112972_9113071;chr2R_9112620_9112639 33.33 25.00 50.00 40.00 NA 33.33 NA NA 33.33 NA NA 44.44 NA NA 28.57 16.67 NA 44.44 NA 28.57 NA 10.53 40.00 41.18 25.00 43.75 23.53 20.00 NA 25.00 23.08 NA NA 20.00 NA NA 31.25 NA 42.11 38.46 28.57 35.71 NA 33.33 NA 25.00 33.33 NA 50.00 45.45 NA NA NA 33.33 NA NA 40.00 22.22 K intron_retention RI_chr2R_19244231_19244378,vir chr2R - chr2R_19249970_19250022 chr2R_19249969_19249970;chr2R_19250022_19250023 chr2R_19249273_19249969;chr2R_19250023_19252910 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA 1.75 0.00 0.00 0.00 0.00 9.52 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG8798,I_chr3L_19602800_19602865 chr3L - chr3L_19602800_19602865 chr3L_19602810_19602865 chr3L_19602866_19602965;chr3L_19602700_19602799 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 95.45 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.59 96.67 93.33 100.00 93.75 100.00 100.00 96.00 97.22 100.00 100.00 92.86 100.00 100.00 95.00 94.44 100.00 100.00 N jcn_only_AD CG9339,RE_chr2L_20903555_20916904,I_chr2L_20903560_20918638,I_chr2L_20922613_20922685 chr2L - chr2L_20917121_20918093;chr2L_20917121_20918638 chr2L_20917121_20918798 chr2L_20916905_20917120;chr2L_20918799_20918888 65.31 NA NA 76.19 NA NA NA NA 55.56 NA NA 60.71 NA NA NA 87.10 NA NA 78.26 65.31 NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA 80.95 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 45.45 N intron_retention I_chrX_19573364_19573474,Mer,E_chrX_19584965_19587100,CG14229 chrX - chrX_19585968_19586333 chrX_19585967_19585968;chrX_19586333_19586334 chrX_19585731_19585967;chrX_19586334_19587282 36.36 NA 30.00 16.67 NA 31.82 47.83 46.43 45.16 100.00 26.67 35.29 31.58 NA 50.00 50.00 30.77 30.43 41.18 34.15 45.45 37.50 40.00 36.84 NA 37.50 40.00 46.15 35.29 21.43 44.12 33.33 15.56 29.17 31.25 NA 52.63 38.46 30.00 39.29 100.00 34.29 40.00 40.00 29.63 37.84 25.93 21.57 36.67 46.15 33.33 NA 20.00 35.29 27.78 36.36 36.84 12.96 K jcn_only_AD RpL12,I_chr2R_19948517_19948682 chr2R + chr2R_19947968_19948035 chr2R_19947973_19948035 chr2R_19948036_19948097;chr2R_19947923_19947967 48.47 51.85 55.42 50.00 60.87 66.20 69.51 57.14 69.75 17.65 49.48 58.65 56.58 55.07 54.84 49.07 48.98 51.85 56.76 53.23 62.50 26.67 NA 5.00 NA 50.43 28.00 11.11 22.58 27.59 50.00 39.13 30.43 63.04 30.00 16.67 48.00 NA NA 6.78 26.19 66.81 50.82 5.04 42.98 17.50 28.00 16.28 60.80 28.57 NA 18.52 28.00 NA 48.47 13.04 14.29 26.73 K jcn_only_AA Papss chr3L + chr3L_19838529_19838634;chr3L_19838529_19838611 chr3L_19838529_19838596 chr3L_19838397_19838528;chr3L_19838635_19838730 21.88 NA NA NA NA NA NA NA 26.92 NA NA 28.57 NA NA NA NA NA NA NA 21.88 NA NA 4.76 NA NA NA NA NA NA NA NA NA 8.33 30.43 NA NA NA NA NA NA NA 19.05 NA NA NA 26.09 NA NA 18.18 NA 25.00 NA NA NA NA NA NA 13.51 K alternative_donor Pten,I_chr2L_10256507_10256803,F_chr2L_10259663_10260253 chr2L - chr2L_10259691_10260853 chr2L_10259691_10260253 chr2L_10259476_10259690;chr2L_10260854_10260860 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 97.37 100.00 95.45 100.00 100.00 100.00 100.00 100.00 90.00 100.00 K alternative_last_exon CG8611,I_chrX_17309193_17309577 chrX - chrX_17309193_17313480 chrX_17309878_17313480 chrX_17309003_17309192 chrX_17309809_17309877 chrX_17313481_17313908 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA CG1092 chr3R + chr3R_92928_93014 chr3R_92928_92982 chr3R_92694_92927;chr3R_93015_94005 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention RI_chr3L_201061_201173,NitFhit,I_chr3L_212783_212843 chr3L + chr3L_203791_203843 chr3L_203790_203791;chr3L_203843_203844 chr3L_203699_203790;chr3L_203844_205311 21.91 25.00 24.24 24.14 18.75 20.00 27.50 28.26 36.00 NA 15.00 26.19 33.33 36.84 31.58 23.33 23.08 21.95 21.88 21.54 9.09 12.90 NA 41.67 NA 23.33 NA NA 19.05 11.76 28.00 15.38 9.09 28.85 NA 21.43 25.00 NA 31.58 6.25 15.38 13.73 16.67 6.67 2.04 15.15 30.77 10.81 20.97 NA NA NA NA NA 22.22 NA 33.33 3.77 K alternative_donor CG7231 chr2L + chr2L_7985442_7985552;chr2L_7985494_7985552 chr2L_7985434_7985552 chr2L_7985553_7985768;chr2L_7985425_7985433 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 70.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA 85.71 NA K intron_retention I_chr3R_261173_261244,CG14650,RI_chr3R_265878_265942 chr3R + chr3R_266046_266114 chr3R_266045_266046;chr3R_266114_266115 chr3R_265949_266045;chr3R_266115_266407 0.00 0.00 0.00 0.85 2.53 0.00 2.25 0.00 0.00 0.00 0.00 1.53 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.54 0.00 0.00 0.00 5.26 6.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.60 0.00 0.00 0.00 0.93 0.00 0.00 0.00 K alternative_acceptor CG1832,I_chr2L_22167179_22167302,I_chr2L_22168644_22168740 chr2L - chr2L_22167239_22167302 chr2L_22167254_22167302 chr2L_22167303_22167402;chr2L_22167050_22167238 15.52 18.75 10.66 17.68 10.38 15.29 15.85 16.67 14.10 11.67 16.67 16.13 11.81 16.49 12.71 14.60 15.96 11.76 12.93 18.50 15.62 15.25 17.21 15.79 21.21 9.01 17.89 33.33 13.51 13.58 15.29 15.52 16.13 16.23 16.90 17.14 18.56 12.77 18.95 15.00 11.01 15.14 14.89 14.29 17.74 14.12 18.39 15.19 18.00 14.71 20.17 12.16 14.29 15.71 11.63 18.18 14.58 17.32 K jcn_only_AA spz chr3R - chr3R_22892176_22892329 chr3R_22892203_22892329 chr3R_22892330_22892387;chr3R_22892041_22892175 69.35 64.24 71.52 81.75 68.49 68.82 82.16 70.81 71.39 65.40 69.52 70.88 67.13 69.25 66.50 70.58 71.27 71.84 69.35 71.52 68.16 58.49 60.76 65.56 73.35 79.72 53.49 58.97 81.17 73.72 69.06 73.40 78.00 71.68 69.09 61.44 68.15 66.04 64.66 70.82 78.71 74.43 74.52 70.10 61.11 69.38 58.31 72.36 72.80 59.06 62.83 71.94 60.36 63.58 68.23 66.99 51.28 70.44 K jcn_only_AD TBPH,I_chr2R_19748981_19749882,I_chr2R_19748981_19749921,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19748981_19749882;chr2R_19748981_19750012;chr2R_19748981_19749783 chr2R_19748981_19749899 chr2R_19748884_19748980;chr2R_19750013_19750013 2.06 0.00 0.00 1.72 6.67 3.33 2.00 0.00 0.00 NA 0.00 1.33 0.00 5.26 4.88 5.45 5.88 3.57 1.92 2.78 0.00 3.57 2.22 3.33 11.54 0.00 5.41 NA 5.00 4.76 0.00 0.00 4.76 0.00 NA 0.00 0.00 7.69 2.13 4.44 4.00 1.43 0.00 5.88 NA 2.78 4.55 0.00 1.69 6.06 0.00 2.86 NA 0.00 2.86 0.00 0.00 0.00 K alternative_donor Mct1 chrX + chrX_2092973_2093852 chrX_2092977_2093852 chrX_2093853_2093972;chrX_2092665_2092972 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA 100.00 NA 88.89 100.00 88.89 NA 100.00 100.00 NA NA NA 87.50 NA 100.00 NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 100.00 K intron_retention I_chr2L_13965397_13965694,RI_chr2L_13967695_13967746,nimB4 chr2L - chr2L_13969461_13969618 chr2L_13969460_13969461;chr2L_13969618_13969619 chr2L_13968897_13969460;chr2L_13969619_13969964 6.47 8.00 6.90 6.56 9.23 7.69 5.63 13.51 6.38 NA 7.27 7.32 5.77 6.90 8.97 12.96 7.14 6.67 6.52 6.47 5.00 10.71 0.00 0.00 6.67 0.00 8.33 NA 0.00 0.00 8.82 3.12 0.00 9.76 4.00 0.00 1.61 3.70 5.66 6.52 0.00 7.03 8.51 0.00 0.00 5.71 10.00 0.00 5.26 3.37 8.00 0.00 3.08 3.12 12.00 5.00 7.03 10.00 K intron_retention nmdyn-D7 chr3R + chr3R_5506389_5506438 chr3R_5506388_5506389;chr3R_5506438_5506439 chr3R_5506221_5506388;chr3R_5506439_5507247 0.00 0.00 6.67 8.33 0.00 0.00 0.00 4.76 4.65 0.00 0.00 3.85 NA 0.00 0.00 4.17 0.00 0.00 0.00 0.00 5.56 0.00 0.00 3.70 9.52 0.00 21.05 NA NA NA 6.90 0.00 0.00 0.00 0.00 5.26 0.00 0.00 9.09 0.00 7.69 5.13 NA NA 0.00 0.00 2.94 0.00 2.78 4.76 0.00 0.00 0.00 0.00 0.00 3.70 3.70 8.70 K alternative_acceptor CG6643,I_chr3R_20370792_20375406,tRNA:D:96A chr3R + chr3R_20380856_20381189 chr3R_20380856_20381180 chr3R_20380424_20380855;chr3R_20381190_20381684 97.85 98.10 98.91 98.21 98.61 98.68 97.03 97.54 95.83 97.56 96.92 97.45 100.00 96.30 98.86 99.05 97.47 97.37 98.11 97.26 96.88 97.47 99.05 98.29 96.72 95.56 97.44 95.65 98.31 98.63 96.61 98.55 98.85 99.19 96.34 98.51 95.00 95.35 96.94 96.15 99.02 98.18 94.59 98.75 95.60 99.21 97.32 97.50 98.70 97.85 98.90 98.48 97.87 98.80 95.28 99.10 96.72 99.20 K alternative_acceptor Zn72D,RF_chr3L_16100887_16102721,I_chr3L_16105199_16105253 chr3L - chr3L_16104982_16105097 chr3L_16105015_16105097 chr3L_16105098_16105198;chr3L_16103583_16104981 0.00 0.00 2.50 2.17 0.00 2.33 0.00 0.00 3.77 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 5.00 1.06 5.56 1.64 1.10 0.00 2.56 0.00 2.27 0.00 4.88 0.00 1.37 0.00 2.70 0.00 0.00 0.00 1.27 2.00 0.00 1.41 0.00 1.67 0.00 2.78 4.35 2.00 2.22 0.00 4.11 2.38 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 K intron_retention Chc,I_chrX_15728946_15729357 chrX - chrX_15722683_15722748 chrX_15722682_15722683;chrX_15722748_15722749 chrX_15722596_15722682;chrX_15722749_15722915 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor uzip,I_chr2R_20916008_20916468 chr2R + chr2R_20899685_20900155;chr2R_20899701_20900155 chr2R_20899732_20900155 chr2R_20900156_20900229;chr2R_20899603_20899684 0.00 0.00 0.00 3.45 0.00 4.35 10.00 2.70 0.00 0.00 0.00 2.70 0.00 0.00 0.00 2.50 0.00 0.00 0.00 3.92 0.00 0.00 2.63 0.00 0.00 4.76 4.76 0.00 10.00 0.00 2.86 0.00 2.50 0.00 3.33 7.69 0.00 8.33 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 4.55 3.45 2.44 0.00 0.00 0.00 8.33 0.00 2.94 0.00 0.00 2.38 K alternative_acceptor rl,I_chr2RHet_199154_207044,RI_chr2RHet_203476_203577,RI_chr2RHet_203592_207044,I_chr2RHet_232696_247338,RI_chr2RHet_240197_247338 chr2RHet + chr2RHet_198817_198964;chr2RHet_198817_198981 chr2RHet_198817_198973 chr2RHet_198804_198816;chr2RHet_198982_199153 31.25 NA 22.22 31.25 20.00 44.44 38.64 36.11 14.29 NA NA 46.15 30.00 23.08 NA 29.03 28.57 22.22 23.53 30.43 33.33 NA 28.57 37.50 28.57 28.57 33.33 NA NA 44.44 54.55 NA NA 41.38 20.00 35.71 44.44 NA 36.36 NA NA 37.50 NA NA NA 33.33 55.56 NA 44.83 28.57 28.57 25.00 NA NA 44.44 NA NA 28.57 K intron_retention Tpr2 chr2L + chr2L_16505949_16506007 chr2L_16505948_16505949;chr2L_16506007_16506008 chr2L_16505496_16505948;chr2L_16506008_16506852 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette RhoGAP100F,F_chr3R_27658626_27659118,F_chr3R_27660019_27660096,F_chr3R_27662909_27663491 chr3R + chr3R_27662904_27665601 chr3R_27662904_27663495;chr3R_27663750_27665601 chr3R_27663496_27663749 chr3R_27662888_27662903;chr3R_27665602_27665718 85.41 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA 75.00 NA 75.00 83.33 100.00 NA NA 100.00 NA NA NA NA NA 80.00 NA 87.50 NA NA NA NA NA NA NA NA NA 80.00 K cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2814327_2816013;chr2R_2813804_2816013 chr2R_2814327_2814894,chr2R_2813804_2814894;chr2R_2815654_2816013 chr2R_2814895_2815653 chr2R_2813704_2813803;chr2R_2816014_2816113 14.29 16.07 15.38 22.41 13.04 12.90 16.67 8.33 12.94 9.76 16.00 19.44 11.76 15.15 10.26 21.88 13.16 12.00 14.29 15.86 18.18 12.20 16.36 20.88 26.09 14.29 14.29 26.09 17.86 16.67 9.68 14.29 19.05 16.95 13.24 22.64 16.18 15.71 18.52 13.18 11.43 12.94 16.67 8.57 14.02 9.17 10.29 13.59 12.16 10.34 11.84 8.93 10.00 12.50 14.29 11.90 15.56 11.39 K intron_retention chic,RI_chr2L_5976783_5980950,I_chr2L_5979705_5979818,I_chr2L_5979705_5979941,RI_chr2L_5979705_5979951,I_chr2L_5979705_5979953,I_chr2L_5979705_5980025,I_chr2L_5979705_5980213,I_chr2L_5979705_5980370,I_chr2L_5979705_5980558,I_chr2L_5979705_5980632,I_chr2L_5979705_5980639,RI_chr2L_5979705_5980734 chr2L - chr2L_5979705_5980952 chr2L_5979704_5979705;chr2L_5980952_5980953 chr2L_5979605_5979704;chr2L_5980953_5981025 5.56 0.00 0.00 13.56 8.00 0.00 0.00 3.23 7.59 NA 0.00 5.56 9.09 6.25 3.03 6.82 NA 13.79 6.06 4.55 0.00 6.25 NA 12.50 NA 15.00 NA 35.29 27.59 0.00 4.55 3.33 1.96 3.23 8.00 0.00 NA NA NA 13.33 2.44 9.23 3.33 17.39 4.00 4.88 NA 2.82 7.00 NA NA NA 6.67 NA 6.25 NA 13.64 2.78 K intron_retention Lig4 chrX - chrX_13561170_13561228 chrX_13561169_13561170;chrX_13561228_13561229 chrX_13560259_13561169;chrX_13561229_13561389 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 4.55 NA 0.00 0.00 NA NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 NA NA 13.33 NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA 0.00 NA 3.85 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD CaMKII,I_chr4_1069766_1069812,I_chr4_1071236_1071307,RI_chr4_1071236_1071315,RI_chr4_1071489_1071968,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1071236_1071968;chr4_1071236_1071884;chr4_1071236_1071813;chr4_1071236_1072054 chr4_1071236_1071319 chr4_1071136_1071235;chr4_1072055_1072059 94.06 NA 93.55 78.65 NA NA 94.00 87.91 94.59 NA NA 94.12 96.15 97.62 96.67 93.16 95.65 NA 90.57 94.12 89.29 100.00 82.61 NA NA NA NA NA 90.91 100.00 86.89 96.15 100.00 86.59 NA 100.00 NA NA NA 93.75 97.14 86.67 92.31 100.00 92.00 95.92 NA 92.98 89.02 NA NA NA NA NA 94.29 NA NA 96.04 K jcn_only_AA prominin-like,I_chr3L_3121200_3123087 chr3L - chr3L_3121200_3127652 chr3L_3127026_3127652 chr3L_3127653_3127699 80.23 85.61 82.58 69.18 71.15 74.09 86.24 85.52 77.37 85.37 62.75 87.54 80.23 78.92 73.47 71.01 86.22 79.85 81.45 81.65 72.78 40.29 82.93 81.58 67.27 84.46 78.00 60.00 65.82 75.68 80.93 69.23 61.18 77.71 83.82 85.45 76.13 81.58 82.98 69.44 66.67 80.75 81.33 84.35 88.89 91.07 72.58 72.60 80.67 78.57 79.17 82.08 86.44 79.17 82.24 75.00 81.82 82.98 K intron_retention Mdh chr3R + chr3R_22981795_22981862 chr3R_22981794_22981795;chr3R_22981862_22981863 chr3R_22981500_22981794;chr3R_22981863_22981991 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG42490,noncoding_3620,I_chr2L_18665287_18666474,RI_chr2L_18666413_18666474,CREI_chr2L_18666629_18666680 chr2L + chr2L_18665287_18665675 chr2L_18665286_18665287;chr2L_18665675_18665676 chr2L_18665274_18665286;chr2L_18665676_18665914 18.86 NA NA NA NA NA 25.00 30.77 6.25 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 11.11 NA NA 33.33 NA NA NA NA NA 16.67 NA 25.00 NA NA NA NA NA 14.29 21.05 NA NA NA NA NA NA NA NA NA K intron_retention Fibp,RI_chr3L_19810268_19810326 chr3L - chr3L_19809921_19809970 chr3L_19809920_19809921;chr3L_19809970_19809971 chr3L_19809820_19809920;chr3L_19809971_19810103 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 9.52 NA NA NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Zpr1,RI_chrX_9055207_9055334 chrX - chrX_9055207_9055334 chrX_9055221_9055334 chrX_9055335_9055434;chrX_9055107_9055206 100.00 100.00 100.00 100.00 100.00 100.00 97.33 98.82 100.00 100.00 100.00 99.10 100.00 100.00 100.00 98.77 100.00 100.00 100.00 99.17 100.00 100.00 100.00 98.61 97.62 100.00 100.00 97.78 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.85 98.70 100.00 100.00 97.78 95.35 100.00 97.14 100.00 100.00 100.00 100.00 98.72 100.00 98.65 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG11665,RI_chr2R_1530001_1531078,I_chr2R_1530001_1531096,RI_chr2R_1530001_1531145,RI_chr2R_1535330_1540011 chr2R - chr2R_1530001_1531096 chr2R_1531041_1531096 chr2R_1531097_1531178;chr2R_1529901_1530000 99.59 99.29 99.31 100.00 99.14 99.15 99.47 99.59 99.67 100.00 99.20 99.60 99.19 100.00 100.00 100.00 100.00 99.24 100.00 99.68 100.00 96.12 99.42 99.34 98.98 100.00 99.44 98.61 100.00 100.00 100.00 98.86 98.67 100.00 98.99 98.08 99.28 99.19 99.32 99.52 99.10 100.00 100.00 99.43 98.86 98.84 100.00 99.30 100.00 98.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Gpo-1,I_chr2R_11747621_11747699,EI_chr2R_11747445_11747699,I_chr2R_11749758_11750187,I_chr2R_11756325_11756380 chr2R - chr2R_11748259_11748565 chr2R_11748258_11748259;chr2R_11748565_11748566 chr2R_11748106_11748258;chr2R_11748566_11748611 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA 14.29 NA NA NA NA NA NA NA K cassette Sh3beta,I_chr3L_7358062_7358169,RI_chr3L_7358065_7358169,I_chr3L_7361085_7361784 chr3L - chr3L_7358062_7359541;chr3L_7358065_7359541 chr3L_7358065_7358169,chr3L_7358062_7358169;chr3L_7359311_7359541 chr3L_7358170_7359310 chr3L_7357965_7358061;chr3L_7359542_7359548 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 75.00 96.15 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 87.50 100.00 100.00 100.00 80.00 83.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Nrx-IV,eap chr3L + chr3L_12142009_12144919 chr3L_12142008_12142009;chr3L_12144919_12144920 chr3L_12141892_12142008;chr3L_12144920_12145116 26.47 16.67 21.43 32.69 17.86 16.22 31.48 26.47 12.99 36.84 20.00 35.90 50.00 29.17 18.18 27.91 23.81 22.22 20.00 20.63 21.43 19.57 22.22 26.92 40.00 41.18 27.50 19.05 18.75 29.41 31.25 NA 43.75 23.73 27.78 69.23 24.07 21.88 28.57 37.50 30.77 18.97 30.00 29.55 15.38 29.41 16.67 29.17 29.23 28.57 30.95 25.81 15.00 NA 25.00 NA 25.00 NA K jcn_only_AA mu2,I_chr3L_1945382_1945647 chr3L - chr3L_1945592_1945647;chr3L_1945529_1945647 chr3L_1945574_1945647 chr3L_1945648_1945655;chr3L_1945437_1945528 26.09 NA 33.33 27.66 25.00 NA 7.32 26.92 26.87 NA 28.57 24.44 34.38 40.91 29.41 27.12 8.33 26.09 NA 29.33 43.48 NA 30.95 27.27 NA 21.88 19.23 NA NA NA 20.00 NA NA 9.76 NA 28.57 NA NA 23.33 25.00 NA 26.09 25.00 NA NA NA 25.00 10.00 31.48 23.08 25.00 NA NA NA 33.33 NA 22.73 23.81 K intron_retention Prx6005 chr2L - chr2L_2877390_2877610 chr2L_2877389_2877390;chr2L_2877610_2877611 chr2L_2877090_2877389;chr2L_2877611_2877803 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG8678,RI_chr2L_21213167_21213218,RI_chr2L_21213167_21213227 chr2L - chr2L_21213167_21213227 chr2L_21213167_21213222 chr2L_21213067_21213166;chr2L_21213228_21213318 92.86 96.55 88.00 95.00 80.00 83.33 97.62 93.48 92.75 92.31 93.75 90.91 95.24 94.74 90.91 96.97 95.45 83.33 96.67 89.58 94.44 89.19 97.37 96.77 92.59 92.31 95.24 89.47 92.11 90.00 92.59 95.00 89.47 87.50 96.00 95.45 88.57 83.87 97.50 97.37 95.00 92.86 82.35 94.74 88.24 90.91 94.59 92.31 89.36 88.71 94.12 100.00 95.00 88.46 96.67 96.97 87.76 100.00 K intron_retention p53,CG17119,sav chr3R - chr3R_18876847_18878643 chr3R_18876846_18876847;chr3R_18878643_18878644 chr3R_18876537_18876846;chr3R_18878644_18878670 20.71 NA NA NA NA NA 46.15 13.33 13.33 NA NA 20.00 NA NA 21.43 NA NA NA NA NA NA NA NA 21.43 NA NA NA 80.00 50.00 NA 25.00 NA NA 13.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA 0.00 K intron_retention CG14798 chrX + chrX_1587357_1587417 chrX_1587356_1587357;chrX_1587417_1587418 chrX_1587200_1587356;chrX_1587418_1587876 30.77 NA NA 45.45 NA NA 46.15 NA NA 36.36 NA NA NA NA NA NA NA NA NA 28.57 NA 27.27 30.77 NA NA NA 30.77 NA NA NA 20.69 NA NA NA NA 46.15 26.67 NA 30.77 37.50 NA NA NA NA NA NA NA 46.15 41.67 NA NA NA NA NA NA NA 4.17 NA K intron_retention SCAR chr2L + chr2L_10981429_10981486 chr2L_10981428_10981429;chr2L_10981486_10981487 chr2L_10981179_10981428;chr2L_10981487_10982116 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.65 0.00 0.00 0.00 2.86 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD Hcf,I_chr4_391984_392875 chr4 + chr4_380602_381212;chr4_380911_381212;chr4_380646_381212;chr4_380607_381212 chr4_380985_381212 chr4_381213_381632;chr4_380600_380601 39.53 NA NA 41.30 NA NA 29.63 0.00 35.29 NA NA 50.00 NA 54.55 NA 51.02 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 39.53 NA NA NA NA NA NA NA NA NA K cassette CG6995 chr3R + chr3R_20644572_20646818 chr3R_20644572_20645450;chr3R_20646490_20646818 chr3R_20645451_20646489 chr3R_20644527_20644571;chr3R_20646819_20646968 97.08 99.00 94.20 89.06 98.51 97.10 96.39 94.44 97.37 98.33 97.06 94.89 96.61 98.41 98.82 97.01 98.44 98.75 98.63 97.73 95.77 98.08 97.08 95.90 95.83 96.05 94.06 98.55 98.02 99.00 86.21 96.19 97.79 96.36 95.00 98.95 99.27 96.97 94.59 97.96 94.06 95.71 98.36 94.67 96.88 97.69 99.13 96.62 98.01 95.28 99.07 96.77 98.98 98.90 97.85 97.12 96.36 96.75 K alternative_acceptor Tango2,RI_chrX_13543535_13546911,I_chrX_13544101_13544542 chrX + chrX_13511970_13512305 chrX_13511970_13512134 chrX_13511850_13511969;chrX_13512306_13512435 60.00 53.33 71.43 60.00 42.86 35.71 53.85 62.50 53.85 41.67 50.00 75.00 70.00 83.33 50.00 85.71 83.33 50.00 70.00 54.17 37.50 95.00 61.11 56.00 60.00 91.67 50.00 57.14 66.67 50.00 80.00 61.11 67.86 58.82 38.89 53.33 50.00 46.67 60.87 50.00 77.78 68.18 71.43 63.16 72.00 66.67 42.86 57.14 69.57 63.16 40.00 50.00 60.00 50.00 72.73 42.11 72.73 68.42 K alternative_acceptor CG7685 chr3R + chr3R_14230882_14230959 chr3R_14230882_14230941 chr3R_14230822_14230881;chr3R_14230960_14231025 80.00 79.17 78.57 76.92 90.91 73.68 65.00 79.17 75.00 69.23 66.67 80.00 88.89 69.23 75.00 88.24 87.50 81.25 83.33 76.74 68.75 86.21 82.14 86.21 93.33 94.44 84.85 96.00 69.70 65.00 86.67 93.33 73.08 94.74 89.47 55.56 84.62 86.96 79.41 82.61 73.08 86.67 69.23 84.21 80.00 72.73 74.07 70.83 83.33 77.78 84.00 80.00 76.00 74.07 77.78 84.62 81.25 61.11 K alternative_donor miple2,I_chr3L_271508_273549,I_chr3L_271695_273549,I_chr3L_271922_273549,I_chr3L_274251_274594 chr3L + chr3L_271217_273549;chr3L_273391_273549;chr3L_271695_273549 chr3L_271792_273549 chr3L_273550_273649;chr3L_271209_271216 91.67 100.00 100.00 92.00 87.50 90.00 90.00 93.75 93.33 85.71 75.00 94.74 100.00 100.00 88.89 90.91 100.00 80.00 84.62 95.00 66.67 90.00 94.12 93.75 91.67 100.00 86.67 83.33 80.00 87.50 91.67 85.71 77.78 94.44 90.00 83.33 90.91 90.91 93.75 92.86 83.33 94.44 100.00 93.75 87.50 90.91 88.89 75.00 95.45 92.59 93.33 93.33 100.00 88.89 93.75 93.33 93.75 88.89 K alternative_acceptor CG10417,E_chr2R_1248333_1249215,RI_chr2R_1248452_1248523 chr2R - chr2R_1248452_1248523 chr2R_1248471_1248523 chr2R_1248524_1248623;chr2R_1248352_1248451 96.55 96.88 97.50 98.67 94.12 96.00 97.01 95.89 95.29 96.30 95.24 95.77 100.00 100.00 100.00 97.37 90.91 92.31 95.65 100.00 91.67 96.55 91.18 95.65 95.24 96.88 96.55 100.00 90.91 97.06 100.00 97.96 98.04 96.00 100.00 93.33 95.24 100.00 94.44 92.86 94.03 96.72 97.62 91.18 97.73 97.47 100.00 95.29 96.20 96.67 93.33 100.00 96.55 100.00 97.62 96.97 93.18 96.71 K cassette wge chr3R - chr3R_18542354_18542928 chr3R_18542354_18542655;chr3R_18542773_18542928 chr3R_18542656_18542772 chr3R_18540256_18542353;chr3R_18542929_18543063 100.00 100.00 100.00 94.74 100.00 100.00 90.91 100.00 96.88 100.00 84.62 100.00 90.91 100.00 95.65 100.00 100.00 100.00 91.67 100.00 93.75 93.62 100.00 97.14 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 97.87 100.00 100.00 85.71 100.00 96.97 100.00 97.78 95.00 100.00 100.00 100.00 100.00 100.00 100.00 97.62 97.06 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 96.43 K intron_retention Arf79F,I_chr3L_22863251_22864866,RI_chr3L_22871119_22871250,I_chr3L_22871351_22871733 chr3L - chr3L_22862875_22862941 chr3L_22862874_22862875;chr3L_22862941_22862942 chr3L_22862765_22862874;chr3L_22862942_22863165 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD SdhA,I_chr2R_15281949_15282989,I_chr2R_15283283_15283411 chr2R - chr2R_15281949_15283191 chr2R_15281949_15282989 chr2R_15281849_15281948;chr2R_15283192_15283282 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.39 0.00 0.37 0.48 0.00 0.00 0.53 0.62 0.00 0.00 0.00 1.06 0.62 0.34 0.00 0.00 0.90 0.33 0.00 0.00 0.50 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 K intron_retention Elongin-C,I_chr2R_15333309_15333432,I_chr2R_15336252_15338966 chr2R - chr2R_15333645_15333722 chr2R_15333644_15333645;chr2R_15333722_15333723 chr2R_15333433_15333644;chr2R_15333723_15333794 19.57 26.53 20.16 15.64 19.57 23.23 22.86 17.42 15.02 13.79 21.74 22.27 22.78 20.51 19.86 14.60 28.75 20.47 21.10 15.02 23.36 11.42 23.78 18.67 22.11 35.00 30.85 14.38 23.18 11.98 21.95 8.50 7.94 16.67 15.69 13.79 18.44 24.62 19.68 7.17 7.76 17.33 26.19 11.33 7.12 5.78 17.43 5.31 16.03 17.97 22.64 20.72 13.04 32.81 20.83 26.15 20.42 5.34 K jcn_only_AA CG1161,RI_chr3R_1181273_1181459 chr3R + chr3R_1181273_1181515;chr3R_1181273_1181459 chr3R_1181273_1181555 chr3R_1181173_1181272;chr3R_1181556_1181559 98.78 98.78 98.64 99.32 99.60 100.00 92.07 99.02 99.00 96.51 100.00 99.48 98.33 99.36 99.61 100.00 99.54 99.07 97.69 98.26 98.71 97.89 99.06 98.55 98.35 92.86 96.99 99.54 96.53 100.00 96.61 98.89 98.75 98.44 97.40 97.62 98.34 99.61 99.22 97.60 92.77 99.01 98.21 97.93 96.70 99.17 98.40 100.00 99.71 99.27 98.15 96.32 100.00 99.28 99.62 98.15 99.68 100.00 K intron_retention bwa,I_chr2L_20069515_20073377,I_chr2L_20073310_20073377 chr2L + chr2L_20066899_20069047 chr2L_20066898_20066899;chr2L_20069047_20069048 chr2L_20066389_20066898;chr2L_20069048_20069304 0.00 0.00 2.00 1.94 3.33 0.00 2.53 1.22 2.73 0.00 0.00 4.04 2.44 0.00 0.00 4.29 4.17 0.00 0.00 3.12 0.00 1.31 2.47 0.00 0.00 0.00 2.63 4.48 2.99 2.15 0.00 0.00 1.89 0.00 2.86 0.00 0.00 0.00 4.26 2.45 0.00 3.81 5.56 0.00 0.00 0.00 0.00 0.83 1.04 0.00 0.00 4.55 0.00 0.00 5.77 0.00 0.00 2.61 K intron_retention ens,I_chr3L_4130719_4131120 chr3L - chr3L_4130644_4131120 chr3L_4130643_4130644;chr3L_4131120_4131121 chr3L_4130619_4130643;chr3L_4131121_4131220 100.00 NA NA NA NA NA NA NA 100.00 NA NA 69.23 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.00 NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG1265,I_chr3L_4255296_4255550 chr3L + chr3L_4255296_4255353;chr3L_4255296_4255609;chr3L_4255296_4255550 chr3L_4255296_4255457 chr3L_4255196_4255295;chr3L_4255610_4255650 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 3.03 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 1.30 0.00 2.13 K alternative_donor CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2439416_2439498;chr3L_2435133_2439498 chr3L_2436229_2439498 chr3L_2439499_2439583;chr3L_2434626_2435132 99.23 98.73 98.46 99.22 100.00 98.18 99.06 99.02 99.37 100.00 97.92 99.19 98.00 100.00 98.51 98.51 98.11 98.28 98.25 99.23 97.92 99.65 99.48 99.21 99.11 98.44 98.45 99.22 99.42 99.26 100.00 100.00 99.57 97.85 100.00 99.32 99.45 100.00 99.41 99.50 100.00 99.22 98.04 99.32 100.00 98.88 100.00 99.45 99.06 98.98 99.26 98.51 100.00 100.00 98.75 100.00 100.00 100.00 K intron_retention RI_chrX_7172561_7252693,CG1677,I_chrX_7178792_7252693,unc-119 chrX - chrX_7184711_7184821 chrX_7184710_7184711;chrX_7184821_7184822 chrX_7184704_7184710;chrX_7184822_7185583 0.00 0.00 0.00 0.00 4.00 0.00 0.00 2.27 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.82 0.00 0.00 0.00 0.00 0.00 0.00 5.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG31743 chr2L + chr2L_16881802_16885263 chr2L_16881801_16881802;chr2L_16885263_16885264 chr2L_16881617_16881801;chr2L_16885264_16885735 0.00 NA NA 0.00 NA NA NA NA 0.00 0.00 NA 15.38 NA NA NA 0.00 NA NA NA 12.50 NA 0.00 NA NA NA NA 12.50 7.14 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 NA 0.00 5.88 5.00 NA NA 14.29 0.00 0.00 NA NA NA NA NA 0.00 NA K jcn_only_AA CG7120,I_chr3L_8393044_8393104,I_chr3L_8393044_8393116 chr3L + chr3L_8393044_8393181 chr3L_8393044_8393104 chr3L_8392944_8393043;chr3L_8393182_8393204 0.00 NA NA NA NA NA 0.00 0.00 0.00 NA NA 3.85 NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA 15.00 NA NA NA NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 3.23 K alternative_acceptor Trap1 chr2R - chr2R_2521454_2521515;chr2R_2521438_2521515 chr2R_2521435_2521515 chr2R_2521516_2521564;chr2R_2521152_2521434 0.00 0.00 0.00 0.00 3.57 3.57 0.00 1.79 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 2.86 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 3.03 2.94 0.00 2.22 0.00 0.00 0.00 1.89 0.00 0.00 0.00 2.94 0.00 0.00 0.00 K intron_retention CG3353,RI_chr3R_17043671_17044394 chr3R - chr3R_17043671_17043725 chr3R_17043670_17043671;chr3R_17043725_17043726 chr3R_17043571_17043670;chr3R_17043726_17044340 0.00 0.00 0.00 6.67 0.00 0.00 0.00 1.56 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 11.76 0.00 0.00 0.00 0.00 6.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette CG18659,E_chr2R_5011363_5019110,RI_chr2R_5013572_5014531,I_chr2R_5016147_5016997 chr2R - chr2R_5011651_5014923 chr2R_5011651_5012248;chr2R_5012726_5013055;chr2R_5013572_5014531;chr2R_5014668_5014923 chr2R_5012249_5012725;chr2R_5013056_5013571;chr2R_5014532_5014667 chr2R_5011194_5011650;chr2R_5014924_5015382 97.83 97.92 96.88 84.09 100.00 96.67 95.24 97.30 96.97 100.00 95.45 98.53 100.00 100.00 96.97 100.00 100.00 100.00 100.00 96.30 83.87 81.02 94.59 98.44 97.92 96.43 98.33 96.67 98.39 96.15 100.00 97.83 94.52 97.73 96.00 98.08 97.80 98.11 95.79 98.73 94.64 96.15 95.45 96.36 100.00 98.57 98.36 100.00 98.33 98.39 93.55 96.77 100.00 92.59 97.14 97.92 98.00 98.31 K cassette CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1525393_1526659 chr3L_1525393_1526333;chr3L_1526399_1526659 chr3L_1526334_1526398 chr3L_1525293_1525392;chr3L_1526660_1526731 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N intron_retention kay,noncoding_19957,R_chr3R_25614823_25615439,E_chr3R_25616137_25617114 chr3R + chr3R_25599544_25599635 chr3R_25599543_25599544;chr3R_25599635_25599636 chr3R_25598998_25599543 100.00 NA NA 100.00 NA NA 100.00 62.50 100.00 NA NA 60.00 100.00 46.15 NA 100.00 100.00 100.00 NA 42.86 50.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 57.14 NA 100.00 100.00 100.00 100.00 47.37 NA 52.38 NA NA NA 36.36 NA 63.16 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K jcn_only_AA SMC2,I_chr2R_10737857_10737917 chr2R - chr2R_10737857_10737917 chr2R_10737862_10737917 chr2R_10737918_10738017;chr2R_10737757_10737856 100.00 100.00 97.53 98.72 96.77 100.00 98.44 100.00 99.03 100.00 100.00 95.96 100.00 100.00 100.00 98.13 100.00 100.00 100.00 99.36 98.28 100.00 100.00 94.64 100.00 100.00 100.00 100.00 94.74 100.00 100.00 98.39 100.00 100.00 97.62 100.00 98.36 94.12 94.83 100.00 100.00 99.18 100.00 100.00 100.00 100.00 98.36 99.07 99.22 98.51 98.63 95.24 100.00 100.00 98.88 96.88 98.04 100.00 K intron_retention CG32103,I_chr3L_12398261_12403200 chr3L - chr3L_12407187_12407805 chr3L_12407186_12407187;chr3L_12407805_12407806 chr3L_12407030_12407186;chr3L_12407806_12407901 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA 5.00 NA 0.00 NA 0.00 NA 20.00 5.00 7.69 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA 0.00 NA 8.33 NA NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA K alternative_acceptor CG31068 chr3R + chr3R_23061584_23061627;chr3R_23061584_23061639 chr3R_23061584_23061636 chr3R_23061427_23061583;chr3R_23061640_23061706 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor His4r chr3R + chr3R_10451640_10451747;chr3R_10451538_10451747 chr3R_10451564_10451747 chr3R_10451748_10451951;chr3R_10451469_10451537 0.67 0.44 1.20 0.61 0.87 1.10 1.00 0.58 0.89 0.00 0.93 0.47 1.09 0.49 2.22 1.00 1.12 0.35 0.62 0.87 0.90 0.00 0.00 0.00 0.00 0.54 1.35 2.00 2.01 1.37 1.04 0.41 0.46 0.84 0.00 0.00 0.82 0.00 0.00 1.88 0.67 0.74 0.81 0.00 0.34 1.73 0.00 0.67 0.45 1.63 1.56 0.00 1.03 0.00 0.24 0.49 0.71 1.07 K alternative_donor CG17224,RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605 chr2L - chr2L_3018025_3018081;chr2L_3018025_3018274;chr2L_3018025_3018085;chr2L_3018025_3018278 chr2L_3018025_3018163 chr2L_3017982_3018024;chr2L_3018279_3018287 50.00 66.67 NA 30.00 NA NA 16.67 20.00 33.33 NA NA 27.27 NA 50.00 50.00 16.67 0.00 NA NA 33.33 NA 33.33 NA 33.33 NA NA NA NA NA NA 55.56 75.00 NA 60.00 NA NA NA NA NA 75.00 66.67 44.44 66.67 44.44 100.00 40.00 NA 58.33 57.14 NA NA NA NA NA 100.00 NA NA 62.50 K alternative_acceptor RpL27A,E_chr2L_4457411_4457977,I_chr2L_4458058_4458120 chr2L - chr2L_4457290_4457374;chr2L_4457319_4457374 chr2L_4457275_4457374 chr2L_4457375_4457410;chr2L_4457188_4457274 0.00 0.00 0.00 0.09 0.10 0.00 0.09 0.00 0.05 0.00 0.00 0.04 0.09 0.00 0.00 0.08 0.00 0.09 0.08 0.06 0.00 0.00 0.00 0.10 0.00 0.00 0.00 4.59 0.13 0.00 0.07 0.12 0.08 0.06 0.00 0.00 0.00 0.00 0.12 0.05 0.05 0.07 0.00 0.16 0.00 0.00 0.00 0.00 0.06 0.09 0.00 0.00 0.00 0.00 0.06 0.00 0.07 0.00 K alternative_acceptor smi35A,I_chr2L_14197568_14197656,I_chr2L_14197587_14197656,E_chr2L_14222082_14233893,RI_chr2L_14233579_14233647 chr2L - chr2L_14197568_14197656;chr2L_14197587_14197656 chr2L_14197294_14197656 chr2L_14197657_14197756;chr2L_14196927_14197293 100.00 100.00 100.00 96.97 100.00 100.00 92.86 97.44 97.40 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 91.30 100.00 96.88 100.00 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.23 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Eaf,RI_chr2R_3294566_3294636,I_chr2R_3294566_3294656,RI_chr2R_3294566_3294714,I_chr2R_3294566_3295255,I_chr2R_3294591_3295244 chr2R - chr2R_3294566_3295176;chr2R_3294566_3295244;chr2R_3294566_3294634;chr2R_3294566_3294636;chr2R_3294566_3294638;chr2R_3294566_3294642;chr2R_3294566_3294714 chr2R_3294566_3295280 chr2R_3294491_3294565;chr2R_3295281_3295302 2.53 8.33 3.12 0.00 NA 7.41 0.00 5.88 7.32 NA 6.06 1.85 12.00 4.76 2.56 0.00 0.00 0.00 7.69 2.99 6.67 0.00 2.50 6.45 9.38 0.00 4.35 0.00 0.00 0.00 5.71 0.00 3.03 0.00 NA NA 4.65 0.00 9.76 1.82 0.00 3.77 4.55 0.00 5.00 2.38 0.00 0.00 2.99 0.00 0.00 0.00 8.57 NA 3.33 8.33 0.00 1.79 K cassette C3G chrX - chrX_6680846_6681383 chrX_6680846_6681128;chrX_6681282_6681383 chrX_6681129_6681281 chrX_6680189_6680845;chrX_6681384_6681553 94.53 97.65 95.86 91.62 93.91 95.38 88.20 90.10 95.68 84.85 93.02 97.10 95.88 98.15 93.28 97.60 93.68 92.91 84.55 93.92 95.60 66.55 90.35 93.41 92.38 91.40 93.17 49.61 94.83 98.19 96.36 96.20 95.00 95.71 94.85 92.86 92.76 92.39 95.80 87.80 92.50 96.23 100.00 92.78 96.23 96.24 95.50 96.92 98.35 90.10 93.67 92.04 95.74 91.78 94.53 97.83 97.37 99.28 K jcn_only_AA RecQ5 chr3L - chr3L_14623293_14623619 chr3L_14623545_14623619 chr3L_14623620_14624918;chr3L_14622841_14623292 8.27 7.14 15.91 3.03 4.44 8.33 38.18 10.71 6.78 NA 4.65 6.49 0.00 14.58 8.47 12.24 0.00 9.52 13.33 2.90 8.33 14.71 6.33 8.00 16.33 9.09 7.14 2.22 14.29 3.03 26.09 15.00 7.14 6.45 12.07 21.21 13.73 2.70 3.85 13.95 NA 11.39 5.26 6.25 NA 10.71 10.87 10.00 10.11 6.98 7.50 26.19 4.44 8.33 8.20 3.57 3.51 3.45 K intron_retention RI_chr2L_8218680_8218853,Pvr,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8222115_8222225 chr2L_8222114_8222115;chr2L_8222225_8222226 chr2L_8222103_8222114;chr2L_8222226_8222376 6.54 13.33 5.85 7.69 6.90 4.35 5.32 6.44 8.16 3.08 7.69 6.76 9.68 6.20 8.33 9.30 6.35 5.30 6.87 6.05 8.39 6.45 6.11 7.46 11.18 7.44 13.20 18.07 6.90 7.23 6.62 6.54 4.59 5.94 8.38 6.36 6.54 36.36 5.71 7.08 6.70 4.39 7.14 6.21 3.62 5.47 4.38 6.12 7.00 5.94 5.26 6.14 4.46 5.22 6.81 6.87 3.70 5.37 K alternative_donor Gp150,I_chr2R_18205316_18205386,I_chr2R_18213233_18213308 chr2R + chr2R_18205274_18205386;chr2R_18205243_18205386;chr2R_18205316_18205386 chr2R_18205282_18205386 chr2R_18205387_18205459;chr2R_18205216_18205242 4.44 2.46 0.64 1.04 2.59 6.83 7.99 2.48 2.12 6.45 3.20 2.99 3.16 3.41 1.99 4.28 1.47 1.17 4.82 6.02 3.05 7.25 6.47 6.35 5.79 9.79 13.54 6.25 18.99 1.47 1.79 4.44 0.78 3.90 9.20 13.33 4.46 8.89 8.33 7.38 4.76 3.07 2.67 10.81 2.56 5.41 5.26 8.33 3.11 8.77 6.32 5.83 2.94 4.00 1.27 3.85 2.53 6.02 K alternative_donor RpL3,I_chr3R_7047694_7047896,I_chr3R_7047774_7047896,E_chr3R_7047964_7050565,I_chr3R_7049970_7050189 chr3R + chr3R_7047694_7047896;chr3R_7047655_7047896 chr3R_7047774_7047896 chr3R_7047897_7047963;chr3R_7047619_7047654 0.00 0.00 0.00 0.04 0.00 0.00 0.04 0.02 0.03 0.00 0.00 0.03 0.10 0.00 0.03 0.00 0.04 0.00 0.00 0.02 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.24 0.53 0.04 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.02 0.04 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.07 K intron_retention Stat92E,att-ORFB chr3R - chr3R_16365639_16365696 chr3R_16365638_16365639;chr3R_16365696_16365697 chr3R_16365381_16365638;chr3R_16365697_16366176 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Cip4,I_chr3L_4363128_4363769,I_chr3L_4363386_4363987 chr3L - chr3L_4324448_4324861 chr3L_4324451_4324861 chr3L_4324862_4324996;chr3L_4324284_4324447 34.62 34.15 25.00 44.44 25.71 35.48 40.45 33.33 39.18 37.74 15.00 35.06 21.05 19.35 26.67 26.92 26.83 18.06 30.30 40.40 21.74 38.46 40.62 41.86 35.29 26.53 32.08 30.43 35.14 31.48 27.27 26.47 23.40 38.00 44.44 30.77 42.55 36.36 50.00 39.02 26.09 32.10 26.32 50.00 25.81 34.48 45.71 34.62 39.78 39.13 41.07 53.85 50.00 44.83 23.08 35.48 45.45 33.33 K intron_retention simj,I_chr3L_10680263_10680313 chr3L + chr3L_10679362_10680175 chr3L_10679361_10679362;chr3L_10680175_10680176 chr3L_10679064_10679361;chr3L_10680176_10680262 3.03 1.39 4.48 4.76 0.00 0.00 7.25 0.00 3.91 2.50 3.28 3.54 5.45 6.12 2.60 5.41 5.71 1.35 4.17 3.57 3.64 4.55 3.68 1.98 2.22 0.00 4.92 4.43 2.05 3.21 3.28 0.00 0.69 6.67 2.06 6.19 2.43 2.88 3.11 2.73 1.27 2.78 3.57 2.78 3.45 3.20 2.27 4.32 1.57 2.27 3.85 0.00 1.41 0.00 3.53 0.00 3.03 1.00 K alternative_acceptor betaTub56D,I_chr2R_15336252_15336648,I_chr2R_15336252_15337409,I_chr2R_15336252_15338966 chr2R - chr2R_15336150_15338966 chr2R_15336252_15338966 chr2R_15338967_15339039;chr2R_15334824_15336149 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.92 100.00 100.00 99.92 100.00 100.00 100.00 100.00 100.00 99.84 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.93 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9770053_9788941 chr2R_9770053_9787870;chr2R_9787955_9788941 chr2R_9787871_9787954 chr2R_9769906_9770052;chr2R_9788942_9789041 36.11 33.33 37.50 42.86 40.74 36.36 26.39 35.48 38.14 43.90 21.95 26.44 86.67 39.53 40.54 30.88 10.00 36.11 33.33 28.00 18.52 25.66 26.79 34.62 21.95 43.75 44.44 75.76 52.78 34.09 25.00 NA 25.45 35.38 27.27 42.31 41.07 31.03 37.14 46.67 NA 34.67 37.50 30.00 NA 16.67 NA 44.07 37.78 NA 37.50 30.00 42.86 NA 46.30 NA NA 45.45 K intron_retention rod,CG1635,I_chr3R_27416864_27416939 chr3R + chr3R_27412966_27413024 chr3R_27412965_27412966;chr3R_27413024_27413025 chr3R_27412140_27412965;chr3R_27413025_27413658 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 2.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 2.29 0.00 2.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 8.89 0.00 0.00 1.49 0.00 0.00 0.00 K alternative_acceptor hppy,I_chr2R_15066378_15066915,I_chr2R_15105700_15106080,I_chr2R_15106144_15108248 chr2R + chr2R_15066378_15066881;chr2R_15066378_15067003 chr2R_15066378_15066915 chr2R_15066360_15066377;chr2R_15067004_15067015 7.20 5.26 8.33 16.00 12.50 6.67 10.34 5.00 4.76 0.00 25.00 4.17 16.67 28.57 6.67 19.44 11.76 12.50 9.52 2.86 14.29 9.09 3.45 0.00 5.56 7.69 0.00 5.56 4.17 4.76 26.67 NA 15.38 4.35 5.56 0.00 5.26 10.53 11.11 7.50 0.00 4.35 10.00 1.82 11.11 6.67 11.76 6.90 7.69 10.00 3.12 5.56 7.69 NA 5.26 8.33 NA 8.33 K intron_retention awd chr3R - chr3R_27571313_27571491 chr3R_27571312_27571313;chr3R_27571491_27571492 chr3R_27571190_27571312;chr3R_27571492_27571619 0.36 0.28 0.42 0.40 0.44 0.15 0.59 0.29 0.38 0.42 0.23 0.47 0.48 0.28 0.19 0.29 0.00 0.13 0.20 0.34 0.35 0.14 0.22 0.24 0.44 0.25 0.36 0.65 0.49 0.32 0.32 0.27 0.43 0.25 0.38 0.62 0.36 0.41 0.14 0.40 0.67 0.28 0.41 0.33 0.51 0.49 0.75 0.76 0.31 0.62 0.59 0.41 0.35 0.36 0.15 0.44 0.30 0.73 K jcn_only_AD CG17159,CG17162,noncoding_25215 chrXHet - chrXHet_69232_75430;chrXHet_69232_75279 chrXHet_69232_75250 chrXHet_69195_69231;chrXHet_75431_75453 77.67 NA 83.87 73.33 NA 85.00 66.67 76.47 81.03 NA 90.32 80.95 NA NA 78.26 80.77 NA 56.52 NA 80.00 63.64 NA 69.57 79.17 NA 83.87 NA NA NA NA 90.48 NA NA 73.17 NA NA 72.41 76.19 78.38 65.22 NA 74.29 NA 90.00 NA NA NA NA 77.08 NA 79.17 76.92 NA NA 70.59 NA NA NA K alternative_donor CG4699 chr3R + chr3R_11619752_11620550;chr3R_11619772_11620550;chr3R_11619776_11620550;chr3R_11619676_11620550 chr3R_11619570_11620550 chr3R_11620551_11621301;chr3R_11619539_11619569 0.00 5.56 0.00 2.38 0.00 0.00 0.00 0.00 2.22 0.00 5.26 2.22 0.00 0.00 3.45 0.00 0.00 0.00 3.70 6.12 0.00 0.00 0.00 0.00 0.00 3.23 0.00 6.25 0.00 0.00 0.00 0.00 0.00 5.00 5.26 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.41 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 K intron_retention CG12054 chr3R + chr3R_27050955_27051534 chr3R_27050954_27050955;chr3R_27051534_27051535 chr3R_27050886_27050954;chr3R_27051535_27051798 96.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 96.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD larp,F_chr3R_24151542_24153876,I_chr3R_24160430_24160932,I_chr3R_24160430_24160971,RI_chr3R_24160430_24161527 chr3R - chr3R_24160430_24161729;chr3R_24160430_24160971;chr3R_24160430_24160975;chr3R_24160430_24160979;chr3R_24160430_24161939;chr3R_24160430_24161527 chr3R_24160430_24160932 chr3R_24160330_24160429;chr3R_24161940_24162125 3.10 4.39 0.00 1.67 1.90 1.98 2.79 3.51 2.77 5.62 4.60 2.50 2.42 3.20 2.27 1.59 0.69 3.10 3.68 2.91 4.63 5.15 4.02 2.90 4.60 8.57 5.73 2.04 4.08 5.04 2.10 8.70 6.22 2.52 4.42 2.52 4.93 1.89 2.24 8.48 4.94 1.37 2.27 8.82 7.58 7.27 2.22 7.60 4.52 0.00 5.33 2.06 3.03 1.92 2.84 3.17 4.94 2.68 K intron_retention alphaTub84B,EI_chr3R_2912813_2912955 chr3R + chr3R_2912467_2912955 chr3R_2912466_2912467;chr3R_2912955_2912956 chr3R_2912232_2912466;chr3R_2912956_2913055 0.00 0.18 0.00 0.03 0.10 0.11 0.00 0.07 0.00 0.18 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.12 0.00 0.00 0.00 0.00 0.28 0.70 0.42 0.14 0.03 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.15 0.06 0.00 0.00 0.00 0.02 0.05 0.00 0.03 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.09 K intron_retention CG1622,I_chrX_13191916_13192167,I_chrX_13192409_13192738,EI_chrX_13192857_13192928 chrX + chrX_13192221_13192738 chrX_13192220_13192221;chrX_13192738_13192739 chrX_13192168_13192220;chrX_13192739_13192838 10.00 NA NA NA NA NA NA NA 23.08 NA NA 18.75 NA NA NA NA NA 6.67 NA 21.43 NA 0.00 NA NA NA NA NA NA 0.00 NA 8.33 NA 15.38 NA NA 0.00 NA NA NA NA 15.00 NA NA NA NA 0.00 NA 0.00 41.67 NA 16.67 NA NA NA NA NA NA 10.00 N cassette msn,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2560296_2563817;chr3L_2558390_2563817 chr3L_2558390_2561931,chr3L_2560296_2561931;chr3L_2562844_2563817 chr3L_2561932_2562843 chr3L_2558293_2558389;chr3L_2563818_2563917 74.33 59.40 82.53 82.86 65.71 71.78 92.63 83.98 78.25 68.64 73.71 79.70 53.12 78.11 70.11 93.40 80.90 56.89 85.06 82.77 77.25 38.13 69.50 60.59 63.09 80.63 78.46 46.73 64.41 75.95 87.61 68.35 67.42 82.37 67.86 81.95 59.24 54.02 62.37 81.38 79.67 69.67 80.00 76.54 61.83 70.48 61.57 77.04 80.37 68.84 78.33 71.49 74.33 67.23 74.34 66.24 78.16 82.24 K jcn_only_AD CG6364,I_chr3R_20116610_20116825 chr3R + chr3R_20116875_20118559 chr3R_20118453_20118559 chr3R_20118560_20118691 92.00 NA NA 90.91 NA NA 80.00 NA 89.66 NA NA NA NA NA 100.00 NA NA NA NA NA NA 81.48 NA NA NA NA NA NA NA NA 95.00 NA 90.48 NA NA NA 90.48 NA 82.61 95.24 NA 93.10 NA NA 82.14 100.00 92.00 85.71 95.83 95.83 NA NA NA NA NA NA 95.00 95.83 K intron_retention ago,I_chr3L_4251841_4253988 chr3L - chr3L_4248123_4248182 chr3L_4248122_4248123;chr3L_4248182_4248183 chr3L_4247912_4248122;chr3L_4248183_4248408 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 1.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389597_9390195;chr2R_9389597_9390151;chr2R_9389597_9389907;chr2R_9389597_9389940;chr2R_9389597_9390293;chr2R_9389597_9389751;chr2R_9389597_9389753;chr2R_9389597_9389757 chr2R_9389597_9390264 chr2R_9389497_9389596;chr2R_9390294_9390295 0.87 0.00 3.49 3.92 4.35 0.00 0.85 4.50 0.62 0.00 0.00 0.00 0.00 0.00 1.20 0.87 0.00 1.10 3.19 1.75 0.00 1.82 0.00 4.11 0.00 4.11 0.00 0.00 1.85 0.00 5.88 5.00 2.33 0.83 0.00 1.03 1.67 2.70 1.67 0.96 4.00 1.45 0.00 0.00 0.00 0.00 1.18 0.00 2.24 1.64 1.39 0.00 0.00 0.00 3.57 0.00 0.00 3.51 K intron_retention RpS25,I_chr3R_7041333_7041414,I_chr3R_7041347_7041556,RI_chr3R_7044164_7044221 chr3R - chr3R_7041692_7041784 chr3R_7041691_7041692;chr3R_7041784_7041785 chr3R_7041472_7041691;chr3R_7041785_7041938 11.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA 11.76 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention RI_chrX_2612780_2612845,ttm50,crm chrX - chrX_2625511_2625566 chrX_2625510_2625511;chrX_2625566_2625567 chrX_2624982_2625510;chrX_2625567_2625745 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.98 3.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention muskelin chr2R - chr2R_8518286_8518348 chr2R_8518285_8518286;chr2R_8518348_8518349 chr2R_8517889_8518285;chr2R_8518349_8518490 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA 100.00 NA 100.00 NA 90.91 100.00 NA NA NA NA 100.00 100.00 NA 95.65 90.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 K alternative_donor SNF4Agamma,I_chr3R_16982134_16982890 chr3R + chr3R_17027129_17027406 chr3R_17027131_17027406 chr3R_17027407_17027904;chr3R_17027063_17027128 95.24 91.67 NA 100.00 NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 90.00 NA 90.32 100.00 100.00 90.00 NA 92.86 95.24 100.00 90.00 87.50 NA 90.91 100.00 88.89 100.00 88.00 100.00 95.24 95.65 NA 100.00 NA 93.75 NA NA 100.00 NA 100.00 93.33 82.35 NA 100.00 83.33 NA 88.89 NA NA K jcn_only_AA cwo,noncoding_15870,chr3R_6215619_6216520.0,chr3R_6216827_6217291.0,chr3R_6217556_6219555.0,chr3R_6219984_6221958.0 chr3R + chr3R_6215160_6222426;chr3R_6215160_6222423 chr3R_6215160_6222418 chr3R_6214846_6215159;chr3R_6222427_6222542 96.30 95.65 NA 100.00 NA NA NA 96.15 100.00 NA NA 100.00 NA NA NA 90.00 NA NA NA 89.29 NA 98.08 95.92 96.77 NA NA 96.30 NA 96.97 97.22 NA NA 100.00 93.10 96.30 100.00 97.14 92.00 95.65 92.68 92.31 96.15 NA 95.45 NA NA NA 98.00 96.88 94.59 100.00 100.00 NA NA 95.24 NA NA 96.15 K cassette Gmap,I_chrX_15393496_15401194,I_chrX_15400854_15401194,I_chrX_15402291_15403750 chrX + chrX_15393496_15401194 chrX_15393496_15397615;chrX_15400495_15401194 chrX_15397616_15400494 chrX_15393449_15393495;chrX_15401195_15401294 99.22 96.83 98.21 100.00 97.73 100.00 97.53 98.82 100.00 98.51 100.00 99.01 97.87 100.00 100.00 100.00 100.00 100.00 100.00 99.22 100.00 98.89 97.94 100.00 100.00 100.00 97.37 100.00 98.33 98.53 100.00 98.15 100.00 100.00 98.00 97.14 100.00 98.89 100.00 99.06 98.31 99.13 97.78 100.00 98.53 98.70 100.00 100.00 99.09 100.00 98.13 100.00 98.73 100.00 98.51 100.00 98.92 100.00 K intron_retention Nup154,I_chr2L_11009331_11009442,I_chr2L_11011380_11011453 chr2L + chr2L_11009812_11009878 chr2L_11009811_11009812;chr2L_11009878_11009879 chr2L_11009784_11009811;chr2L_11009879_11009944 90.35 89.47 94.44 94.87 73.33 93.75 82.50 90.70 89.13 NA 91.67 97.14 86.96 89.66 88.24 93.33 100.00 91.67 91.67 87.10 90.00 80.00 87.50 93.75 93.33 94.12 87.50 NA NA 91.67 72.73 75.00 100.00 90.00 92.86 92.31 75.00 84.62 78.57 83.33 96.00 97.37 90.91 94.44 94.12 88.00 100.00 76.47 90.91 89.66 82.61 90.00 88.89 89.47 85.71 96.15 95.45 92.00 K cassette sw chrX - chrX_20104518_20105848 chrX_20104518_20105401;chrX_20105435_20105848 chrX_20105402_20105434 chrX_20104497_20104517;chrX_20105849_20105976 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 5.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA K alternative_donor tws,I_chr3R_5960899_5960978,CG6241 chr3R - chr3R_5959310_5960163;chr3R_5959310_5960041;chr3R_5959310_5959789;chr3R_5959310_5960049;chr3R_5959310_5960182;chr3R_5959310_5960026;chr3R_5959310_5960158;chr3R_5959310_5959679 chr3R_5959310_5960101 chr3R_5958937_5959309;chr3R_5960183_5960224 20.83 14.29 30.00 16.00 25.00 10.00 34.78 27.27 34.48 20.00 14.29 22.73 33.33 25.00 21.43 23.33 20.00 30.00 23.53 21.74 12.50 25.00 25.00 12.50 16.67 11.11 20.00 12.50 0.00 11.11 23.08 0.00 0.00 25.93 25.00 22.22 25.00 25.00 16.67 11.11 33.33 20.83 27.27 33.33 0.00 12.50 33.33 4.76 18.75 20.00 30.00 28.57 16.67 0.00 18.75 20.00 33.33 0.00 K intron_retention lig,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3963954_3964764 chr2R_3963953_3963954;chr2R_3964764_3964765 chr2R_3963798_3963953;chr2R_3964765_3964796 21.54 18.97 14.29 28.57 16.28 23.53 35.71 21.74 23.17 17.14 27.27 28.30 30.95 18.52 19.15 29.03 15.62 16.33 18.42 20.99 23.33 28.30 18.42 10.96 19.57 25.00 30.19 58.82 23.08 24.44 15.38 25.00 21.88 21.54 21.43 7.69 15.79 22.45 18.42 23.88 23.08 24.36 17.65 29.79 13.16 14.00 8.96 35.00 26.79 17.65 16.98 20.00 18.52 7.94 24.07 21.82 10.26 46.15 K alternative_donor miple2,I_chr3L_271508_273549,I_chr3L_271695_273549,I_chr3L_271922_273549,I_chr3L_274251_274594 chr3L + chr3L_271792_273549;chr3L_273391_273549;chr3L_271695_273549 chr3L_271217_273549 chr3L_273550_273649;chr3L_271209_271216 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Amun,I_chrX_11607839_11608272,I_chrX_11607842_11608105,I_chrX_11607842_11608125,RI_chrX_11607842_11608272 chrX - chrX_11607718_11607787;chrX_11607631_11607787 chrX_11607722_11607787 chrX_11607788_11607838;chrX_11606802_11607630 100.00 100.00 98.78 100.00 100.00 100.00 100.00 100.00 98.90 97.78 100.00 100.00 100.00 100.00 100.00 98.96 100.00 100.00 98.21 98.79 100.00 100.00 98.59 98.61 100.00 98.00 98.61 100.00 98.72 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.01 98.39 99.21 100.00 100.00 100.00 100.00 100.00 98.18 100.00 98.33 100.00 98.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Tsp42Ee,I_chr2R_2899841_2899895,RI_chr2R_2904593_2904783 chr2R + chr2R_2899841_2900537 chr2R_2899840_2899841;chr2R_2900537_2900538 chr2R_2899753_2899840;chr2R_2900538_2900621 0.57 0.61 0.50 0.29 0.35 0.44 0.76 0.36 0.37 1.47 0.29 0.43 0.41 0.57 0.46 0.39 0.47 0.36 0.61 0.26 0.49 0.89 0.93 1.42 1.09 0.72 1.76 3.29 1.80 0.61 0.43 0.33 0.27 0.32 0.74 1.34 0.85 0.77 0.77 1.12 0.42 0.50 0.52 0.65 0.43 0.70 1.22 0.54 0.24 1.19 0.61 0.87 0.93 0.88 0.29 0.85 0.57 0.40 K intron_retention CG10353,I_chrX_11775936_11778830,I_chrX_11778617_11778830,RI_chrX_11780885_11780988 chrX - chrX_11775936_11777133 chrX_11775935_11775936;chrX_11777133_11777134 chrX_11775836_11775935;chrX_11777134_11777218 13.04 9.09 9.52 21.88 22.22 12.50 7.50 9.76 10.53 NA 0.00 14.29 15.38 12.50 14.81 15.56 19.05 7.69 9.38 9.09 13.04 33.33 7.41 9.09 22.22 0.00 12.50 NA 38.46 19.05 19.35 NA 4.35 10.64 12.50 8.00 10.00 23.08 20.69 18.18 15.38 17.95 18.18 5.56 NA 8.33 20.00 11.63 16.33 NA 20.00 18.75 11.11 15.38 36.84 20.00 NA 10.34 K alternative_acceptor Exp6,I_chrX_369347_369797 chrX - chrX_368234_368342 chrX_368252_368342 chrX_368343_368539;chrX_367797_368233 4.76 5.00 4.35 5.71 NA NA 0.00 4.00 6.06 NA NA 3.70 5.56 0.00 NA 12.50 NA 7.14 NA 8.57 6.67 4.55 3.03 4.35 NA NA 8.70 NA 4.55 5.56 5.56 NA 3.12 3.23 0.00 7.14 4.00 5.56 3.85 6.67 4.35 0.00 NA 0.00 0.00 5.56 6.67 4.76 7.41 0.00 9.09 NA NA NA 5.00 0.00 NA 6.25 K alternative_acceptor Klc,I_chr3L_12741783_12742943,I_chr3L_12741838_12743062 chr3L - chr3L_12739928_12739997 chr3L_12739931_12739997 chr3L_12739998_12740303;chr3L_12739716_12739927 97.50 97.30 100.00 94.67 92.86 96.15 97.33 95.24 98.85 100.00 100.00 92.42 97.67 97.56 96.88 98.70 100.00 96.00 97.56 100.00 95.00 100.00 96.00 96.88 100.00 96.67 97.06 95.00 96.55 100.00 98.11 94.74 100.00 98.51 100.00 100.00 92.86 100.00 100.00 97.56 96.83 98.28 100.00 96.67 97.22 97.50 93.10 98.33 98.59 92.50 95.24 96.88 100.00 100.00 94.87 97.37 97.14 98.33 K intron_retention ATPsyn-Cf6,I_chr3R_19181508_19181563,I_chr3R_19181524_19181702 chr3R - chr3R_19181508_19181584 chr3R_19181507_19181508;chr3R_19181584_19181585 chr3R_19181424_19181507;chr3R_19181585_19181663 7.69 NA NA NA NA NA 7.69 NA 17.65 NA NA 14.29 NA NA NA NA NA 7.69 NA 7.69 NA NA NA NA NA 22.22 NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Spec2,noncoding_14812,CG2911 chr3R - chr3R_1448411_1448469 chr3R_1448410_1448411;chr3R_1448469_1448470 chr3R_1447834_1448410;chr3R_1448470_1448873 14.29 NA NA 16.67 NA NA 6.25 NA NA NA NA NA NA NA NA 23.53 NA NA NA 14.29 NA 28.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA 0.00 6.67 K alternative_donor ced-6,I_chr2R_5324717_5324924,I_chr2R_5328640_5328696 chr2R - chr2R_5325238_5329011;chr2R_5325238_5329037 chr2R_5325238_5328696 chr2R_5324931_5325237;chr2R_5329038_5329082 98.96 100.00 98.98 98.60 98.39 98.73 99.33 98.35 99.13 97.10 100.00 97.86 100.00 100.00 96.26 100.00 100.00 97.83 99.12 99.20 100.00 95.59 99.22 98.06 100.00 98.92 98.68 98.59 98.80 98.73 99.02 98.18 97.21 99.42 100.00 100.00 98.91 98.51 100.00 97.72 100.00 98.48 98.84 98.96 98.90 100.00 100.00 99.00 98.56 97.89 99.08 98.67 100.00 100.00 98.47 98.84 100.00 99.18 K alternative_acceptor CG1140,I_chr3L_1964610_1964836 chr3L + chr3L_1964610_1965074;chr3L_1964610_1965059 chr3L_1964610_1964836 chr3L_1964541_1964609;chr3L_1965075_1965273 3.33 0.00 2.50 0.00 3.70 2.86 7.14 3.33 6.25 0.00 3.33 6.02 10.00 8.11 2.08 3.33 3.45 5.88 6.45 2.54 3.12 38.10 5.66 3.92 2.78 6.67 0.00 0.00 0.00 2.78 2.04 3.23 3.28 7.69 3.33 2.13 5.88 2.56 4.11 9.09 0.00 5.06 0.00 5.00 5.41 3.92 8.33 3.39 2.78 4.55 2.00 6.45 0.00 1.96 3.92 2.78 2.27 2.13 K intron_retention scaf6,EI_chr3L_17037760_17037808 chr3L - chr3L_17033311_17033538 chr3L_17033310_17033311;chr3L_17033538_17033539 chr3L_17033238_17033310;chr3L_17033539_17033701 12.77 NA 17.65 7.69 NA 12.50 11.76 17.39 19.51 NA NA 15.00 29.41 22.22 NA 9.68 NA NA 18.18 6.67 NA NA 14.71 0.00 0.00 NA 20.00 NA NA NA 20.00 0.00 0.00 18.52 0.00 22.22 13.04 0.00 12.00 16.67 15.38 8.33 14.29 5.00 NA 0.00 0.00 7.69 23.81 NA 18.52 NA NA NA 25.00 5.88 7.14 NA K intron_retention dia chr2L + chr2L_20760842_20763496 chr2L_20760841_20760842;chr2L_20763496_20763497 chr2L_20760525_20760841;chr2L_20763497_20765452 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 K alternative_acceptor smt3,I_chr2L_6967327_6967507 chr2L - chr2L_6967330_6967507 chr2L_6967386_6967507 chr2L_6967508_6967593;chr2L_6966982_6967329 100.00 100.00 100.00 99.86 99.75 100.00 99.83 99.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.78 100.00 99.79 99.77 100.00 100.00 100.00 100.00 99.80 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.75 100.00 99.78 100.00 100.00 99.86 100.00 K jcn_only_AD Pkc98E chr3R + chr3R_24865713_24866817 chr3R_24865795_24866817 chr3R_24866818_24867147;chr3R_24865708_24865712 82.86 NA NA 91.30 NA NA NA 81.82 77.78 NA NA 82.76 NA NA NA NA NA NA NA 77.42 NA 51.43 89.66 NA NA NA NA NA 93.33 81.48 66.67 NA NA 80.95 NA NA 82.86 NA 100.00 92.00 NA 96.00 NA NA NA NA NA 95.65 83.33 NA NA NA NA NA NA NA NA NA K intron_retention bur,psnoRNA:bur-a,I_chr2L_21177679_21178250,I_chr2L_21177960_21179329 chr2L - chr2L_21176972_21177204 chr2L_21176971_21176972;chr2L_21177204_21177205 chr2L_21176671_21176971;chr2L_21177205_21177509 0.00 1.10 0.93 1.61 0.00 0.00 0.00 3.03 1.84 0.00 2.44 2.37 0.00 0.00 2.11 0.00 0.00 1.19 0.00 2.70 0.00 0.00 1.37 0.00 0.00 0.00 1.45 2.94 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 1.54 1.20 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 1.70 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 N jcn_only_AD Lag1,RI_chrX_6153758_6153930,I_chrX_6153758_6155077,RI_chrX_6153758_6161036,I_chrX_6160907_6161036 chrX - chrX_6153758_6155077;chrX_6153758_6153930;chrX_6153758_6161036;chrX_6153758_6154193;chrX_6153758_6154358;chrX_6153758_6160439 chrX_6153758_6154631 chrX_6153658_6153757;chrX_6161037_6161136 5.13 4.21 6.33 4.81 5.88 7.10 5.98 12.08 5.13 0.00 4.48 6.88 6.53 7.91 3.50 10.30 5.30 4.16 7.99 5.41 0.00 4.95 2.31 2.82 2.69 7.74 0.00 3.85 7.61 4.07 11.81 6.67 4.87 8.23 5.23 3.31 1.95 3.91 2.93 5.46 7.98 5.67 9.56 5.43 5.26 8.87 5.05 8.00 6.29 2.55 3.40 4.42 0.00 4.45 8.37 3.90 2.62 4.92 K jcn_only_AD CG33298 chr2L + chr2L_9496256_9503592;chr2L_9495657_9503592 chr2L_9495712_9503592 chr2L_9503593_9504813;chr2L_9495488_9495656 0.00 0.00 3.23 1.69 4.35 NA 0.00 0.00 3.33 NA 4.35 0.00 5.56 0.00 0.00 0.00 2.44 0.00 0.00 0.00 4.35 9.09 NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA 9.52 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA 2.56 NA NA NA K intron_retention CG42389,I_chr2L_16622842_16634725,chr2L_16628843_16629150.0 chr2L + chr2L_16622842_16652742 chr2L_16622841_16622842;chr2L_16652742_16652743 chr2L_16622742_16622841;chr2L_16652743_16652912 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention scra,EI_chr2R_3480349_3480405 chr2R + chr2R_3477967_3478072 chr2R_3477966_3477967;chr2R_3478072_3478073 chr2R_3477722_3477966;chr2R_3478073_3478387 0.00 0.00 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention wts chr3R - chr3R_26617498_26617562 chr3R_26617497_26617498;chr3R_26617562_26617563 chr3R_26617419_26617497;chr3R_26617563_26617678 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 3.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG15439,E_chr2L_4449585_4452632,CG15440 chr2L - chr2L_4450364_4450772 chr2L_4450363_4450364;chr2L_4450772_4450773 chr2L_4449431_4450363;chr2L_4450773_4453037 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 9.68 NA NA 6.25 NA 10.53 0.00 0.00 7.69 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.00 5.41 14.29 6.25 14.29 0.00 0.00 7.69 NA 0.00 7.14 0.00 0.00 7.14 0.00 5.56 6.25 0.00 0.00 5.71 0.00 0.00 16.67 0.00 7.41 0.00 0.00 0.00 6.67 9.09 0.00 4.00 K intron_retention CG2003 chr3R + chr3R_27815249_27815312 chr3R_27815248_27815249;chr3R_27815312_27815313 chr3R_27815109_27815248;chr3R_27815313_27816636 5.41 8.51 0.00 24.24 4.76 7.46 5.26 6.45 6.42 9.09 0.00 5.15 8.89 3.92 3.12 0.00 4.00 3.77 10.81 4.88 5.88 2.78 5.88 7.69 3.33 7.32 17.65 13.04 0.00 3.64 13.56 4.55 6.67 2.78 5.41 12.50 7.32 4.65 6.56 8.70 0.00 6.14 4.44 2.94 3.28 3.28 0.00 4.92 6.19 10.00 6.35 8.33 7.14 8.82 5.80 5.00 2.78 2.20 K alternative_donor cryptocephal,I_chr2L_21311307_21311752,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21311033_21311752;chr2L_21311307_21311752;chr2L_21311215_21311752 chr2L_21311532_21311752 chr2L_21311753_21311852;chr2L_21310948_21311032 16.77 13.85 10.52 3.79 14.58 10.69 9.08 5.43 11.65 21.92 11.30 7.75 9.15 9.43 10.48 18.93 9.73 18.89 7.90 10.21 10.53 20.70 12.23 25.08 14.24 4.82 20.65 37.63 37.70 20.31 11.28 32.88 20.35 6.73 16.77 25.37 29.13 19.75 24.33 35.40 19.79 10.20 8.40 17.80 30.50 19.50 24.91 18.05 8.26 25.45 15.45 20.72 23.16 28.02 8.06 22.41 20.35 15.25 N jcn_only_AA CG30193,CG30190 chr2R + chr2R_18815153_18817321 chr2R_18815153_18816610 chr2R_18815039_18815152;chr2R_18817322_18817596 100.00 100.00 100.00 86.49 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.41 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG17737,I_chr3L_3223527_3224313,I_chr3L_3223943_3224313 chr3L + chr3L_3223928_3224313 chr3L_3223927_3223928;chr3L_3224313_3224314 chr3L_3223843_3223927;chr3L_3224314_3224413 0.10 0.10 0.00 0.20 0.31 0.32 0.26 0.17 0.12 0.00 0.00 0.22 0.00 0.50 0.11 0.30 0.17 0.00 0.00 0.11 0.13 0.00 0.08 0.21 0.45 0.00 0.17 0.72 0.29 0.00 0.00 0.00 0.15 0.19 0.00 0.15 0.00 0.35 0.20 0.23 0.00 0.14 0.17 0.00 0.00 0.00 0.08 0.00 0.28 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG9797 chr3R - chr3R_4555824_4556254 chr3R_4555824_4556088 chr3R_4555512_4555823;chr3R_4556255_4556334 100.00 100.00 100.00 98.92 100.00 100.00 100.00 98.65 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.02 100.00 98.59 98.48 100.00 100.00 95.65 100.00 100.00 100.00 99.15 100.00 100.00 100.00 100.00 98.94 99.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.19 K intron_retention l(1)G0193 chrX - chrX_7837261_7839928 chrX_7837260_7837261;chrX_7839928_7839929 chrX_7836542_7837260;chrX_7839929_7840252 0.85 0.57 1.08 1.52 1.45 0.00 2.08 0.75 1.96 1.23 2.08 1.52 0.00 0.00 0.00 0.62 0.00 0.00 1.69 1.03 0.00 0.74 1.85 0.00 0.00 0.00 0.00 1.00 0.00 1.45 0.93 0.00 0.00 1.56 1.55 0.00 0.86 0.00 0.00 0.90 2.50 0.66 1.72 0.85 0.00 1.30 0.90 2.47 1.32 0.43 1.88 1.49 0.00 0.00 1.15 0.74 0.64 1.42 K intron_retention CG18490,I_chr3L_11209088_11209685 chr3L + chr3L_11219902_11220772 chr3L_11219901_11219902;chr3L_11220772_11220773 chr3L_11219736_11219901;chr3L_11220773_11220815 7.55 9.09 11.76 18.37 NA 14.29 18.52 11.54 12.20 NA NA 7.89 NA 0.00 14.29 9.43 9.09 NA 13.64 5.26 NA 9.09 0.00 11.76 7.41 0.00 0.00 NA 3.45 18.75 0.00 5.56 7.14 7.32 0.00 7.41 11.11 7.69 10.71 11.76 6.90 8.33 6.67 12.00 8.33 6.90 10.53 12.24 10.00 7.14 6.67 5.26 0.00 0.00 6.25 0.00 0.00 5.71 K intron_retention CG18522,CG18519 chr3R - chr3R_11358911_11358968 chr3R_11358910_11358911;chr3R_11358968_11358969 chr3R_11358290_11358910;chr3R_11358969_11360784 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.81 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N multi_cassette Hr78,I_chr3L_21490089_21490390,CG33214 chr3L - chr3L_21488969_21490390 chr3L_21488969_21489520;chr3L_21489842_21489919;chr3L_21490023_21490390 chr3L_21489521_21489841;chr3L_21489920_21490022 chr3L_21488699_21488968;chr3L_21490391_21490490 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 73.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N intron_retention CG6701,RI_chr2R_9866896_9867532,noncoding_6685 chr2R - chr2R_9866924_9867532 chr2R_9866923_9866924;chr2R_9867532_9867533 chr2R_9866689_9866923;chr2R_9867533_9867623 100.00 100.00 NA 100.00 100.00 100.00 74.36 100.00 75.00 NA 100.00 73.33 100.00 100.00 NA 71.05 100.00 100.00 100.00 100.00 100.00 100.00 62.96 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 74.07 100.00 100.00 NA NA NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 NA K intron_retention CG18324,I_chr2R_10068194_10068715 chr2R + chr2R_10057028_10057074 chr2R_10057027_10057028;chr2R_10057074_10057075 chr2R_10056892_10057027;chr2R_10057075_10057672 25.00 21.74 33.33 31.25 NA 18.75 23.08 33.33 21.43 NA 26.67 25.00 NA 28.57 NA 28.57 36.36 28.57 33.33 25.93 21.43 11.76 26.92 22.73 30.77 20.00 33.33 52.17 16.00 16.00 28.57 29.17 23.08 15.00 NA 35.71 9.09 27.27 32.00 14.29 20.83 28.57 NA 15.00 25.81 19.23 46.15 23.53 24.00 25.00 26.32 16.67 36.36 23.81 21.05 18.18 23.33 25.00 K alternative_acceptor CG8043,CG11755 chr3R + chr3R_4502770_4502817;chr3R_4502770_4502834;chr3R_4502770_4502810 chr3R_4502770_4502843 chr3R_4502645_4502769;chr3R_4502844_4503955 0.00 NA 10.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA 10.00 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 0.00 14.29 NA NA 0.00 0.00 NA 0.00 NA 10.00 14.29 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 K intron_retention CG12773 chrX - chrX_1245071_1245134 chrX_1245070_1245071;chrX_1245134_1245135 chrX_1243920_1245070;chrX_1245135_1245313 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.45 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.43 0.00 0.00 0.00 0.00 7.69 0.00 6.52 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG9306,I_chr2L_13370565_13370841,I_chr2L_13370795_13370841 chr2L - chr2L_13370764_13370853 chr2L_13370764_13370841 chr2L_13370696_13370763;chr2L_13370854_13370918 100.00 100.00 99.42 100.00 100.00 99.39 100.00 100.00 100.00 100.00 100.00 99.77 100.00 100.00 98.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.26 99.32 100.00 100.00 100.00 100.00 100.00 100.00 99.72 100.00 100.00 100.00 99.82 99.34 98.54 99.49 100.00 100.00 100.00 99.76 99.82 100.00 100.00 100.00 99.75 100.00 100.00 99.56 100.00 99.77 100.00 99.36 K intron_retention debcl,I_chr2R_2539027_2539493 chr2R + chr2R_2539638_2539692 chr2R_2539637_2539638;chr2R_2539692_2539693 chr2R_2539494_2539637;chr2R_2539693_2540353 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.47 0.00 0.00 0.00 0.00 2.50 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Art3,I_chr3R_11054902_11054955 chr3R - chr3R_11054902_11054972;chr3R_11054902_11054965 chr3R_11054902_11054955 chr3R_11054802_11054901;chr3R_11054973_11055055 2.78 0.00 0.00 5.88 0.00 0.00 5.00 4.00 2.78 0.00 0.00 3.45 0.00 7.69 0.00 4.17 NA 0.00 0.00 4.17 7.14 0.00 9.09 0.00 7.69 NA 4.55 0.00 0.00 0.00 20.69 9.09 8.33 4.35 0.00 9.09 4.00 0.00 4.17 3.33 11.11 6.45 0.00 3.85 0.00 4.55 0.00 9.09 3.57 4.55 0.00 0.00 2.78 0.00 0.00 10.00 2.27 0.00 K intron_retention jim,I_chr3L_22791582_22791898 chr3L - chr3L_22791579_22791898 chr3L_22791578_22791579;chr3L_22791898_22791899 chr3L_22791482_22791578;chr3L_22791899_22791998 0.00 0.00 0.00 0.00 0.00 0.00 2.38 2.17 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 K intron_retention foi,I_chr3L_8524905_8524976 chr3L + chr3L_8521881_8523659 chr3L_8521880_8521881;chr3L_8523659_8523660 chr3L_8521860_8521880;chr3L_8523660_8524249 15.65 NA 12.00 13.64 11.76 4.76 27.27 11.90 10.87 NA 4.00 16.67 NA NA 19.05 13.79 13.04 25.00 25.00 9.09 16.67 47.62 NA NA NA 5.88 NA NA 68.00 NA 9.62 NA 17.39 25.00 NA NA NA NA NA 40.00 54.55 10.42 11.76 NA NA NA NA 31.25 14.63 NA NA NA NA NA 19.23 NA NA 30.43 K intron_retention CG32529 chrX + chrX_19765627_19765844 chrX_19765626_19765627;chrX_19765844_19765845 chrX_19762434_19765626;chrX_19765845_19766182 1.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3.70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N cassette CG14995,I_chr3L_4095875_4097205,I_chr3L_4096047_4096903 chr3L - chr3L_4096068_4097205;chr3L_4096068_4097506 chr3L_4096068_4096903;chr3L_4096979_4097205,chr3L_4096979_4097506 chr3L_4096904_4096978 chr3L_4095972_4096067;chr3L_4097507_4097804 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA 94.44 NA NA 100.00 NA NA 85.71 100.00 100.00 87.50 67.50 100.00 100.00 100.00 NA 100.00 100.00 95.45 92.86 90.00 92.86 95.45 100.00 100.00 100.00 100.00 100.00 95.24 100.00 88.89 100.00 NA 100.00 100.00 100.00 93.75 100.00 92.86 100.00 95.83 90.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG6340,I_chrX_15402291_15403750 chrX + chrX_15376571_15377231 chrX_15376570_15376571;chrX_15377231_15377232 chrX_15376446_15376570;chrX_15377232_15377453 6.06 5.00 NA 7.69 NA NA 0.00 10.00 0.00 NA NA 10.00 NA 6.25 0.00 0.00 6.67 6.67 NA 5.88 NA 5.00 12.50 7.69 NA NA 20.00 NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA 10.53 8.00 NA 9.38 NA 0.00 0.00 0.00 NA 0.00 11.76 NA 7.69 NA NA NA 0.00 NA NA 6.45 K alternative_donor His4r chr3R + chr3R_10451640_10451747;chr3R_10451564_10451747 chr3R_10451538_10451747 chr3R_10451748_10451951;chr3R_10451469_10451537 96.78 97.80 96.99 97.71 97.40 97.80 96.01 97.30 96.78 96.77 97.67 97.87 97.10 96.60 96.31 95.35 96.64 98.23 98.15 97.40 97.31 95.74 95.08 97.12 95.45 98.09 91.89 96.00 94.63 94.52 96.88 97.52 98.61 97.49 91.67 96.08 96.72 98.90 97.62 95.62 95.33 97.79 97.58 94.70 98.29 93.06 96.43 96.00 98.04 93.50 92.19 97.56 95.88 94.29 98.04 96.60 95.00 97.07 K intron_retention His4r chr3R + chr3R_10451640_10451747 chr3R_10451639_10451640;chr3R_10451747_10451748 chr3R_10451443_10451639;chr3R_10451748_10451951 6.45 11.76 5.26 6.25 0.00 NA 18.18 2.94 9.52 NA 7.14 17.86 10.53 8.70 0.00 0.00 0.00 0.00 NA 5.88 NA 8.00 NA NA NA 10.53 20.00 NA 10.53 NA 10.00 0.00 NA 8.70 0.00 NA 14.29 NA NA 10.53 0.00 6.45 0.00 0.00 0.00 6.45 12.50 0.00 0.00 11.54 NA 14.29 NA 0.00 8.70 4.35 11.11 0.00 K alternative_donor R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8088371_8089184;chr2L_8088454_8089184 chr2L_8088517_8089184 chr2L_8089185_8089284;chr2L_8088362_8088370 7.14 NA 9.09 11.11 NA NA 15.38 7.69 7.14 NA NA 6.25 9.09 10.00 0.00 10.71 NA 16.67 8.33 4.17 16.67 NA 14.29 NA 0.00 14.29 NA NA NA NA 10.00 NA 0.00 10.00 0.00 7.14 NA NA NA 0.00 16.67 6.25 0.00 0.00 NA 0.00 NA NA 3.85 NA 0.00 NA 0.00 NA 0.00 14.29 NA NA K intron_retention CG7120,I_chr3L_8393044_8393104,I_chr3L_8393044_8393116 chr3L + chr3L_8393044_8393181 chr3L_8393043_8393044;chr3L_8393181_8393182 chr3L_8392944_8393043;chr3L_8393182_8393204 4.76 NA NA NA NA NA 11.11 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 46.15 4.76 5.00 NA NA 10.53 NA 50.00 NA NA NA NA NA NA 12.50 0.00 NA 0.00 0.00 NA 12.50 NA NA NA 11.76 NA NA 13.64 NA NA NA NA NA NA NA 0.00 0.00 K multi_cassette Gel,I_chr3R_63962_64024,I_chr3R_66533_66599 chr3R + chr3R_61047_62274 chr3R_61047_61809;chr3R_61871_61960;chr3R_62004_62274 chr3R_61810_61870;chr3R_61961_62003 chr3R_61015_61046;chr3R_62275_62526 0.16 0.25 0.52 0.17 0.00 0.38 0.00 0.11 0.34 0.00 0.44 0.12 0.14 0.00 0.00 0.40 0.00 0.28 0.20 0.16 0.33 0.00 0.21 0.24 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.20 0.38 0.00 0.32 0.36 0.43 0.39 0.00 0.00 0.26 0.32 0.21 0.00 0.27 0.00 0.27 0.12 0.00 0.24 0.76 0.00 0.00 0.21 0.00 0.00 0.16 K intron_retention CG2694,I_chrX_2609471_2609546,RI_chrX_2622297_2622430,RI_chrX_2622435_2622577 chrX + chrX_2609314_2609370 chrX_2609313_2609314;chrX_2609370_2609371 chrX_2608812_2609313;chrX_2609371_2609466 2.27 NA NA 36.36 NA NA 0.00 8.11 2.27 NA 15.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 15.38 NA 0.00 0.00 NA NA 11.11 NA NA 12.50 0.00 NA 0.00 4.76 0.00 23.53 2.94 NA 3.70 6.67 NA 5.00 NA NA NA NA 0.00 NA 9.52 7.14 11.11 NA NA NA 0.00 NA 0.00 0.00 K alternative_acceptor tefu,I_chr3R_11060517_11060585 chr3R - chr3R_11060517_11060585 chr3R_11060522_11060585 chr3R_11060586_11060685;chr3R_11060417_11060516 97.09 94.12 100.00 96.55 92.31 100.00 96.88 97.30 96.77 NA 100.00 96.55 100.00 100.00 100.00 96.30 95.24 100.00 100.00 100.00 100.00 100.00 93.75 95.45 100.00 100.00 88.89 NA NA 100.00 95.65 87.50 100.00 94.12 77.78 100.00 90.91 100.00 100.00 95.24 NA 97.67 100.00 NA NA 91.67 92.86 100.00 96.30 100.00 100.00 90.91 90.00 NA 96.30 90.00 94.12 100.00 K intron_retention fwd,I_chr3L_310787_310918,RI_chr3L_319514_319746 chr3L - chr3L_306770_306828 chr3L_306769_306770;chr3L_306828_306829 chr3L_306605_306769;chr3L_306829_306917 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 2.86 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.92 0.00 6.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Marf,I_chrX_6263726_6263783 chrX + chrX_6262091_6262558 chrX_6262377_6262558 chrX_6262559_6263485 0.00 0.00 0.00 1.23 0.00 0.00 1.01 0.00 0.00 1.89 0.00 2.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 1.82 0.93 0.85 0.00 0.00 0.00 0.00 1.01 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 3.57 0.00 1.56 0.00 0.00 0.00 0.00 K jcn_only_AD Cyp1,RI_chrX_16212641_16213159,RI_chrX_16212641_16213308,I_chrX_16212641_16213680,I_chrX_16212641_16213960 chrX - chrX_16212641_16213308;chrX_16212641_16214111 chrX_16212641_16213960 chrX_16212541_16212640;chrX_16214112_16214235 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.12 0.00 0.00 0.12 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.29 0.00 0.11 0.07 0.00 0.00 0.06 0.00 0.00 0.04 0.00 0.05 0.07 0.03 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.08 K intron_retention RpS20,snoRNA:Psi28S-2562 chr3R + chr3R_16648614_16648853 chr3R_16648613_16648614;chr3R_16648853_16648854 chr3R_16648524_16648613;chr3R_16648854_16649080 0.00 0.00 0.00 0.00 0.00 0.08 0.02 0.06 0.03 0.00 0.00 0.03 0.03 0.06 0.04 0.04 0.04 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.31 0.11 0.00 0.04 0.00 0.00 0.07 0.07 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.02 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 K mutually_exclusive RpS11,I_chr2R_8087545_8087625,I_chr2R_8087545_8087698,I_chr2R_8087747_8088193 chr2R - chr2R_8087545_8087932,chr2R_8088056_8088279 chr2R_8087545_8087620,chr2R_8087747_8088279 chr2R_8087933_8088055 chr2R_8087621_8087746 chr2R_8087476_8087544;chr2R_8088280_8088293 99.96 99.98 99.97 99.97 99.94 99.94 99.98 99.98 99.96 99.96 99.97 99.99 99.97 99.96 99.98 99.97 99.93 99.97 99.97 99.99 99.97 99.96 99.94 99.96 99.93 99.97 99.96 99.93 99.91 99.97 99.91 99.94 99.88 99.98 99.93 99.97 99.98 99.96 99.98 99.94 99.93 99.97 99.89 99.98 99.96 99.92 99.98 99.86 99.95 99.93 99.98 99.96 99.96 99.97 99.95 99.97 99.99 99.94 K multi_cassette noncoding_24933,sw chrX - chrX_20101671_20105848 chrX_20101671_20103190;chrX_20103239_20104496;chrX_20104518_20105401;chrX_20105435_20105848 chrX_20103191_20103238;chrX_20104497_20104517;chrX_20105402_20105434 chrX_20101515_20101670;chrX_20105849_20105976 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention cryptocephal,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21312209_21312283 chr2L_21312208_21312209;chr2L_21312283_21312284 chr2L_21312125_21312208;chr2L_21312284_21312647 68.19 NA NA 72.73 NA NA 75.00 63.64 63.64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA 54.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Vps13,I_chr2R_3464510_3464571 chr2R + chr2R_3454389_3454650 chr2R_3454505_3454650 chr2R_3454651_3454869;chr2R_3454371_3454388 4.45 NA NA 11.54 NA NA 6.67 6.06 5.41 NA NA 8.82 NA NA 0.00 13.79 NA 8.70 2.56 3.85 NA 0.00 0.00 NA NA NA NA NA 4.55 9.09 3.57 NA 4.35 9.09 NA NA 7.14 NA NA 1.85 NA 0.00 NA 0.00 NA NA NA 3.64 8.16 NA NA NA NA NA 2.86 NA NA NA K alternative_donor CG14767,RI_chr2R_4610372_4610761 chr2R - chr2R_4607290_4607359 chr2R_4607290_4607347 chr2R_4607151_4607289;chr2R_4607360_4607537 48.99 50.78 47.32 48.23 44.19 40.81 50.39 49.57 46.36 55.00 48.74 47.40 50.97 43.64 48.30 45.88 45.99 53.23 53.60 46.46 48.15 49.90 53.65 50.79 49.81 50.91 45.81 44.00 48.40 51.67 51.27 48.35 52.96 52.03 54.50 43.19 48.92 53.01 53.66 54.76 48.39 45.92 47.12 59.33 48.85 48.99 57.84 49.14 46.48 51.80 52.36 45.81 51.65 47.41 47.27 47.74 51.77 53.65 K cassette unc-104,I_chr2R_12643956_12644305,RI_chr2R_12650846_12659758 chr2R - chr2R_12648220_12649172 chr2R_12648220_12648910;chr2R_12648953_12649172 chr2R_12648911_12648952 chr2R_12648103_12648219;chr2R_12649173_12649312 0.00 NA NA 4.76 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 4.35 0.00 5.26 3.70 NA NA NA 0.00 NA 0.00 0.00 0.00 NA 4.35 0.00 NA NA 0.00 NA NA 2.94 NA 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K alternative_last_exon CG33158,chr3L_16432902_16433603.0,RI_chr3L_16482628_16484609 chr3L + chr3L_16415747_16478536 chr3L_16415747_16441539 chr3L_16478537_16478721 chr3L_16441540_16441608 chr3L_16415633_16415746 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention ligatin,Slbp chr3R - chr3R_24976954_24977011 chr3R_24976953_24976954;chr3R_24977011_24977012 chr3R_24975609_24976953;chr3R_24977012_24977494 0.00 0.00 0.00 3.51 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 1.75 1.56 0.00 0.00 0.00 3.57 3.53 0.70 0.00 0.00 0.00 1.80 0.00 0.00 1.37 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 K intron_retention Spx chrX + chrX_6149978_6150051 chrX_6149977_6149978;chrX_6150051_6150052 chrX_6149869_6149977;chrX_6150052_6150135 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 5.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention zip,I_chr2R_20878796_20879147 chr2R - chr2R_20898140_20898622 chr2R_20898139_20898140;chr2R_20898622_20898623 chr2R_20897903_20898139;chr2R_20898623_20898731 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA 100.00 NA NA NA NA 100.00 NA 100.00 90.91 NA NA 100.00 100.00 NA 100.00 100.00 NA NA 88.89 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA K multi_cassette Nipped-B,R_chr2R_590026_590111,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_588767_607274 chr2R_588767_599318;chr2R_599551_599605;chr2R_600281_607274 chr2R_599319_599550;chr2R_599606_600280 chr2R_588445_588766;chr2R_607275_607374 97.78 100.00 100.00 90.62 100.00 95.00 100.00 98.25 98.48 100.00 100.00 96.30 100.00 96.30 100.00 93.10 100.00 95.24 100.00 95.74 100.00 94.44 92.59 94.44 93.75 100.00 95.24 93.75 88.24 93.75 97.78 100.00 100.00 96.67 94.44 94.74 93.33 100.00 92.31 96.15 90.00 96.00 100.00 96.43 100.00 100.00 100.00 96.77 98.36 100.00 100.00 100.00 100.00 80.00 96.30 100.00 100.00 94.12 K jcn_only_AD slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,RI_chr2R_20289332_20289739,I_chr2R_20289332_20289846,I_chr2R_20289332_20290093 chr2R - chr2R_20289332_20290083;chr2R_20289332_20289739;chr2R_20289332_20289846 chr2R_20289332_20290093 chr2R_20289232_20289331;chr2R_20290094_20290193 0.00 NA NA 8.33 NA 0.00 0.00 4.88 0.00 NA NA 1.79 0.00 2.63 3.33 0.00 5.26 0.00 0.00 2.13 0.00 3.23 0.00 3.57 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 4.08 NA 0.00 7.41 4.76 NA 0.00 4.76 0.00 0.00 NA 0.00 0.00 0.00 NA 3.12 NA NA 3.23 K intron_retention ImpL2,I_chr3L_4225707_4225972,I_chr3L_4225707_4226245,I_chr3L_4225707_4226564,I_chr3L_4226910_4226993 chr3L - chr3L_4225707_4226573 chr3L_4225706_4225707;chr3L_4226573_4226574 chr3L_4225607_4225706;chr3L_4226574_4226664 2.78 2.90 2.23 3.02 0.55 2.91 2.65 2.26 2.77 2.35 1.88 2.70 2.40 3.14 3.52 2.69 1.90 5.10 3.11 2.00 2.69 2.05 4.87 4.15 3.42 3.54 4.21 5.43 4.27 3.19 1.41 1.86 1.75 3.12 4.08 4.15 3.52 4.02 2.62 2.99 2.46 2.26 2.68 2.10 1.25 2.63 3.63 1.67 3.11 4.49 3.46 3.14 4.35 2.78 0.88 3.57 2.72 1.90 K intron_retention CG17746,I_chr3L_3238983_3250343 chr3L - chr3L_3238073_3238611 chr3L_3238072_3238073;chr3L_3238611_3238612 chr3L_3237742_3238072;chr3L_3238612_3238982 0.83 0.00 0.00 0.00 0.00 1.45 1.69 0.59 2.72 1.94 0.00 0.83 1.20 0.00 0.00 0.00 0.00 2.44 1.55 1.36 0.00 2.34 0.88 2.80 3.39 0.00 1.05 4.26 0.96 0.00 0.00 0.00 0.00 0.60 0.00 1.54 2.66 2.88 2.82 1.71 1.56 0.38 0.00 0.71 0.66 0.00 0.00 0.00 1.88 1.23 2.88 4.05 0.00 2.38 1.40 0.00 0.90 0.24 K intron_retention SC35,I_chr2L_12432222_12432308,psnoRNA:SC35-a,psnoRNA:SC35-b chr2L - chr2L_12432724_12433578 chr2L_12432723_12432724;chr2L_12433578_12433579 chr2L_12432309_12432723;chr2L_12433579_12433709 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.59 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive betaTub97EF chr3R - chr3R_23794914_23795381,chr3R_23795550_23798642 chr3R_23794914_23795104,chr3R_23795273_23798642 chr3R_23795382_23795549 chr3R_23795105_23795272 chr3R_23794649_23794913;chr3R_23798643_23798872 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.68 0.34 0.00 0.58 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.52 0.00 0.36 0.00 0.00 0.42 0.83 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.34 0.37 0.30 0.00 0.46 0.00 0.50 0.39 0.00 0.00 K jcn_only_AD kuz,F_chr2L_13635998_13637287,I_chr2L_13636762_13637287 chr2L + chr2L_13636762_13637287;chr2L_13636002_13637287 chr2L_13636844_13637287 chr2L_13637288_13637387 22.77 20.37 39.39 70.43 14.81 11.11 51.61 23.17 29.59 33.33 47.06 64.50 15.25 36.36 35.53 47.79 33.33 53.33 28.57 31.32 50.54 19.61 15.34 20.33 27.17 54.08 19.59 21.92 22.77 14.58 30.99 22.03 32.54 20.16 21.98 32.73 20.34 14.41 18.40 16.19 24.68 22.80 28.99 14.29 37.63 28.17 15.49 23.00 21.21 15.48 15.69 19.44 12.64 13.85 29.85 11.11 21.62 19.05 K intron_retention gish,I_chr3R_12125412_12126290 chr3R + chr3R_12124273_12125312 chr3R_12124272_12124273;chr3R_12125312_12125313 chr3R_12124192_12124272;chr3R_12125313_12125411 9.09 7.14 0.00 26.32 NA NA 39.13 11.11 22.58 NA NA 20.59 NA NA 16.67 14.29 NA NA NA 6.10 NA NA 15.79 8.70 NA NA 11.11 43.75 0.00 NA 14.29 0.00 4.35 16.67 5.88 0.00 14.29 20.00 10.00 6.06 NA 13.33 15.38 0.00 0.00 6.67 0.00 9.09 9.68 0.00 9.09 13.33 6.67 NA 9.09 0.00 6.45 0.00 K intron_retention mth chr3L - chr3L_344539_344614 chr3L_344538_344539;chr3L_344614_344615 chr3L_344367_344538;chr3L_344615_344620 15.00 7.14 9.09 20.83 7.69 25.00 8.33 30.30 20.83 NA 11.11 16.28 40.00 17.65 23.53 22.58 20.83 18.18 31.03 17.65 16.67 NA 7.69 12.50 0.00 18.75 8.33 NA NA 18.75 15.38 NA 9.09 20.00 0.00 NA 8.70 9.52 0.00 14.29 4.76 17.50 40.00 NA NA 0.00 15.00 NA 19.44 6.90 10.53 0.00 NA NA 18.52 11.11 9.09 NA K intron_retention Dp,I_chr2R_9111166_9112971,REI_chr2R_9113257_9113316 chr2R + chr2R_9113130_9113195 chr2R_9113129_9113130;chr2R_9113195_9113196 chr2R_9112972_9113129;chr2R_9113196_9113256 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 1.00 2.50 1.32 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 K intron_retention c11_1 chrX - chrX_9172223_9172284 chrX_9172222_9172223;chrX_9172284_9172285 chrX_9171748_9172222;chrX_9172285_9172930 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 4.69 2.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pp4-19C,I_chrX_20293932_20294672,RI_chrX_20293980_20294069,REI_chrX_20294004_20294672 chrX - chrX_20293980_20294672 chrX_20293979_20293980;chrX_20294672_20294673 chrX_20293904_20293979;chrX_20294673_20294772 4.78 5.08 6.00 4.85 3.45 4.04 8.82 7.37 3.47 6.56 11.48 3.18 4.00 2.90 4.55 2.20 8.77 11.11 3.49 3.90 5.26 3.95 6.63 6.45 7.53 4.44 3.33 9.43 6.90 6.06 3.30 7.84 7.04 4.10 4.35 1.98 2.96 5.43 3.17 4.78 3.77 3.77 3.51 3.94 5.62 5.71 6.90 3.74 3.95 6.17 3.50 5.63 5.19 4.21 4.67 5.43 6.06 10.91 K alternative_donor BM-40-SPARC,I_chr3R_22696095_22696231,I_chr3R_22696095_22696291,I_chr3R_22696095_22697413 chr3R - chr3R_22696095_22697647;chr3R_22696095_22697413;chr3R_22696095_22696231 chr3R_22696095_22696291 chr3R_22695995_22696094;chr3R_22697648_22697767 0.18 0.16 0.11 0.15 0.10 0.15 0.23 0.08 0.22 0.24 0.22 0.14 0.16 0.17 0.14 0.26 0.17 0.15 0.19 0.18 0.08 0.04 0.20 0.28 0.40 0.16 0.33 0.12 0.28 0.12 0.32 0.29 0.18 0.10 0.09 0.47 0.10 0.27 0.21 0.49 0.21 0.21 0.25 0.09 0.21 0.34 0.11 0.89 0.22 0.11 0.16 0.20 0.09 0.09 0.16 0.19 0.09 0.24 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2389073;chrX_2389272_2390808;chrX_2390959_2391350;chrX_2391522_2395659 chrX_2389074_2389271;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2395660_2395759 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 K alternative_acceptor dgt6 chr3R - chr3R_24954603_24954668 chr3R_24954619_24954668 chr3R_24954669_24955189;chr3R_24954306_24954602 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 1.82 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG2224 chr3R - chr3R_26283127_26283184 chr3R_26283140_26283184 chr3R_26283185_26283500;chr3R_26283014_26283126 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 NA 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 K intron_retention Vha100-1,I_chr3R_24958227_24960770,RI_chr3R_24959152_24959582,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24958227_24958993 chr3R_24958226_24958227;chr3R_24958993_24958994 chr3R_24958127_24958226;chr3R_24958994_24959059 7.59 3.64 10.91 13.64 0.00 10.34 14.75 10.71 17.86 12.50 15.15 9.86 7.89 10.81 8.16 4.41 6.06 15.15 4.44 13.24 9.52 15.38 7.55 7.04 2.63 3.77 6.17 4.55 4.00 5.88 8.22 4.65 7.46 14.89 7.27 13.33 7.69 4.41 5.26 8.08 4.76 9.30 5.88 7.04 10.00 7.59 7.84 8.57 10.39 3.57 8.22 3.77 6.25 6.56 18.37 0.00 1.59 1.69 K alternative_donor CG15601 chrX + chrX_15605352_15605544 chrX_15605490_15605544 chrX_15605545_15606219;chrX_15605050_15605351 88.89 77.78 90.00 91.67 87.50 88.89 76.92 73.33 100.00 100.00 100.00 92.31 85.71 80.00 85.71 90.91 100.00 87.50 90.91 92.86 83.33 100.00 81.82 78.57 NA 100.00 85.71 83.33 87.50 87.50 85.71 100.00 90.00 91.67 100.00 NA 100.00 83.33 71.43 90.91 63.64 100.00 100.00 87.50 100.00 75.00 100.00 85.71 93.33 92.31 88.89 NA 80.00 100.00 100.00 88.89 85.71 81.82 K intron_retention CG17294,Rcd4 chr2L + chr2L_8377522_8377576 chr2L_8377521_8377522;chr2L_8377576_8377577 chr2L_8377225_8377521;chr2L_8377577_8377623 6.67 0.00 15.38 13.79 NA 0.00 9.80 8.93 8.16 6.67 4.17 9.80 0.00 5.56 0.00 8.00 10.00 10.71 6.67 7.14 0.00 0.00 15.38 7.41 12.50 22.22 27.50 17.07 14.29 0.00 14.29 0.00 NA 0.00 0.00 NA 7.41 0.00 3.23 5.13 18.52 14.58 0.00 2.17 0.00 14.63 15.38 0.00 9.30 4.17 13.33 6.45 NA 3.45 0.00 0.00 16.22 0.00 K cassette boi,I_chrX_2363445_2363896 chrX - chrX_2339627_2340443 chrX_2339627_2339893;chrX_2340215_2340443 chrX_2339894_2340214 chrX_2338205_2339626;chrX_2340444_2340512 1.26 0.00 1.54 0.81 0.00 1.56 1.54 0.71 0.65 3.92 0.00 1.52 0.00 0.00 1.28 4.00 0.00 0.00 0.00 0.61 0.00 2.38 1.85 4.26 0.00 0.00 0.00 0.00 3.23 0.00 1.89 0.00 2.27 0.87 0.00 0.00 2.27 2.27 2.90 1.74 1.64 1.26 1.75 2.38 2.27 0.83 2.86 0.98 1.45 0.00 3.23 0.00 6.25 2.78 0.00 2.44 0.00 1.47 K jcn_only_AD CG4829,I_chrX_16717240_16717547 chrX + chrX_16711038_16716589 chrX_16711168_16716589 chrX_16716590_16716805;chrX_16710951_16711037 100.00 100.00 100.00 100.00 98.21 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 98.36 98.51 100.00 98.04 100.00 99.05 100.00 100.00 100.00 100.00 95.65 100.00 100.00 NA NA 100.00 100.00 100.00 92.59 100.00 96.67 NA 100.00 NA NA 95.24 100.00 99.01 98.82 96.15 90.48 98.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.72 K alternative_donor CG17883,I_chr2R_560147_560511,I_chr2R_560547_560618 chr2R + chr2R_560568_560618;chr2R_560547_560618;chr2R_560565_560618 chr2R_560147_560618 chr2R_560619_560642;chr2R_560047_560146 6.90 6.82 8.16 11.36 6.45 8.11 1.01 1.98 9.17 19.05 11.11 8.64 3.70 2.08 8.51 3.37 10.91 7.32 7.25 3.74 6.90 3.12 8.00 6.67 11.54 11.11 14.89 6.90 3.33 5.26 10.91 2.50 3.03 8.57 9.09 0.00 8.82 0.00 12.90 1.49 3.23 7.06 7.55 6.82 2.70 3.08 6.67 4.17 8.18 15.22 4.08 11.11 2.94 8.33 7.58 6.00 6.25 4.60 K intron_retention CG41099,I_chr3RHet_1688505_1705884,RI_chr3RHet_1703294_1705884 chr3RHet - chr3RHet_1705816_1705884 chr3RHet_1705815_1705816;chr3RHet_1705884_1705885 chr3RHet_1705737_1705815;chr3RHet_1705885_1705984 14.29 NA 25.00 26.09 NA NA NA NA 46.15 NA NA 11.76 22.73 0.00 NA 14.29 NA NA 0.00 13.79 NA NA NA NA NA NA NA NA NA NA 7.14 NA NA 11.54 NA NA NA NA NA 15.38 NA 30.00 NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA 12.20 K jcn_only_AD CG1640,RI_chrX_13265127_13267895,I_chrX_13265553_13267895,I_chrX_13265618_13267895,RI_chrX_13266680_13267895,RI_chrX_13267529_13267895,I_chrX_13271541_13271890 chrX + chrX_13265560_13267895;chrX_13265401_13267895;chrX_13265248_13267895;chrX_13265094_13267895 chrX_13265295_13267895 chrX_13267896_13267973;chrX_13265065_13265093 30.16 38.89 33.85 38.67 43.86 42.22 38.18 30.14 39.47 22.86 42.22 32.89 20.69 33.33 32.08 24.44 43.18 29.41 40.74 29.35 33.33 18.18 31.58 32.73 40.62 29.27 30.16 22.58 20.97 26.23 48.33 11.63 17.78 32.86 9.52 39.47 25.58 23.88 26.67 23.23 23.68 39.76 36.36 31.25 18.18 30.88 42.11 15.38 44.44 24.49 30.30 20.45 30.00 29.17 44.64 29.27 24.32 16.51 K alternative_acceptor tay,I_chrX_15779977_15780538,RI_chrX_15780874_15781045,I_chrX_15783766_15785978 chrX - chrX_15777398_15777465 chrX_15777401_15777465 chrX_15777466_15777513;chrX_15777227_15777397 72.08 NA 57.14 83.33 NA 66.67 66.67 76.92 77.78 NA 75.00 58.33 77.78 80.00 68.75 71.43 NA NA NA 70.59 NA 62.50 76.92 66.67 55.56 88.89 NA NA NA 63.64 72.73 NA 70.00 77.78 NA NA 60.00 NA NA 87.50 NA 92.31 NA NA NA NA NA NA 66.67 NA 88.89 NA NA NA 84.62 NA NA NA K alternative_donor CG14476,I_chrX_21474758_21476200,I_chrX_21475620_21475965 chrX - chrX_21475620_21476200;chrX_21475620_21476104 chrX_21475620_21476178 chrX_21475520_21475619;chrX_21476201_21476209 4.17 2.78 8.00 6.25 4.17 4.41 7.69 0.81 4.46 0.00 7.14 2.46 3.09 4.76 9.38 7.23 4.55 2.56 3.90 4.82 5.88 2.86 1.85 0.00 7.14 7.81 0.00 4.17 10.00 NA 2.99 NA NA 3.66 4.55 9.09 2.33 3.70 0.00 5.41 NA 5.19 6.00 6.06 NA 0.00 0.00 NA 4.17 2.38 5.88 2.50 5.00 0.00 2.27 0.00 0.00 0.00 K intron_retention CG4290,RI_chrX_1954878_1955077,I_chrX_1962457_1964222 chrX - chrX_1951801_1951861 chrX_1951800_1951801;chrX_1951861_1951862 chrX_1950153_1951800;chrX_1951862_1951956 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention lt,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22831820_22831885 chr2L_22831819_22831820;chr2L_22831885_22831886 chr2L_22831754_22831819;chr2L_22831886_22832028 100.00 100.00 100.00 97.62 100.00 100.00 99.17 99.26 99.30 100.00 100.00 99.00 100.00 100.00 98.28 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.36 100.00 94.12 97.30 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 98.04 98.63 100.00 K intron_retention Dscam,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3254133_3255892 chr2R_3254132_3254133;chr2R_3255892_3255893 chr2R_3253971_3254132;chr2R_3255893_3255920 67.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 61.54 78.57 NA 47.37 NA NA NA NA NA NA NA NA NA NA NA 72.73 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Sema-1b,RI_chr2R_13565425_13565874 chr2R - chr2R_13566288_13566564 chr2R_13566287_13566288;chr2R_13566564_13566565 chr2R_13565777_13566287;chr2R_13566565_13566646 1.61 NA NA 5.26 NA 0.00 5.56 7.32 4.76 NA NA 0.00 0.00 0.00 0.00 3.23 0.00 NA 0.00 0.00 NA NA 14.29 NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 11.76 NA NA NA 13.33 NA 5.71 4.76 NA NA NA NA 12.50 4.88 NA NA NA NA NA 0.00 NA NA NA K intron_retention Oatp74D,I_chr3L_17500359_17500724 chr3L + chr3L_17503429_17503490 chr3L_17503428_17503429;chr3L_17503490_17503491 chr3L_17503244_17503428;chr3L_17503491_17503634 0.00 0.00 1.25 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 1.15 9.09 0.00 0.00 0.00 0.00 0.00 1.80 0.00 0.00 0.85 0.00 0.00 0.00 0.00 2.52 0.00 0.00 0.00 2.00 0.00 0.00 0.59 2.63 0.00 0.00 0.00 0.00 1.32 0.00 1.25 0.00 K intron_retention psq,RI_chr2R_6449696_6467831 chr2R + chr2R_6500437_6500484 chr2R_6500436_6500437;chr2R_6500484_6500485 chr2R_6500242_6500436;chr2R_6500485_6500880 100.00 100.00 97.83 98.44 100.00 100.00 100.00 100.00 98.99 100.00 100.00 98.90 96.67 100.00 98.11 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 98.08 100.00 100.00 98.82 98.70 97.22 100.00 100.00 97.37 100.00 100.00 98.04 99.04 97.44 100.00 100.00 100.00 100.00 100.00 98.80 100.00 98.00 100.00 97.50 100.00 98.28 97.22 100.00 100.00 K cassette MRP,F_chr2L_12727117_12736035 chr2L + chr2L_12727117_12737958 chr2L_12727117_12737397;chr2L_12737619_12737958 chr2L_12737398_12737618 chr2L_12727017_12727116;chr2L_12737959_12738176 46.77 52.00 59.02 45.90 64.71 70.21 54.37 59.04 59.05 31.25 47.06 66.67 53.85 69.57 59.02 66.27 54.00 51.11 54.00 77.78 59.57 7.14 43.18 38.89 34.44 52.00 35.36 20.45 18.32 39.50 43.68 41.07 31.50 58.70 37.33 21.50 41.73 35.90 40.52 43.20 46.77 61.00 56.25 37.02 42.47 51.90 43.48 40.82 65.17 35.46 35.68 44.78 56.94 41.67 64.91 34.69 66.67 64.10 K intron_retention I_chr2L_11009331_11009442,dUTPase,I_chr2L_11011380_11011453 chr2L + chr2L_11011380_11011471 chr2L_11011379_11011380;chr2L_11011471_11011472 chr2L_11011335_11011379;chr2L_11011472_11011553 52.54 59.70 47.40 61.37 40.56 51.68 47.74 39.91 44.12 52.98 47.06 50.00 45.81 47.44 47.71 51.10 47.06 45.90 43.59 50.25 46.86 56.58 66.80 58.85 68.33 73.82 79.90 68.35 75.21 66.35 50.34 53.92 52.54 48.21 67.54 63.37 55.84 57.51 56.69 59.36 74.47 46.83 46.45 71.09 47.89 63.64 61.24 63.64 49.31 49.27 72.07 58.13 52.05 65.26 48.51 59.73 49.19 48.84 K intron_retention CG15221 chrX + chrX_11628745_11628816 chrX_11628744_11628745;chrX_11628816_11628817 chrX_11628217_11628744;chrX_11628817_11629473 0.00 1.33 0.00 4.00 0.00 4.00 0.00 1.68 1.80 0.00 0.00 1.40 3.12 0.00 1.56 2.99 0.00 0.00 0.00 0.00 0.00 2.78 1.02 1.35 0.00 0.00 2.22 0.00 1.28 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.57 0.00 0.00 4.17 0.00 0.00 1.19 0.00 0.00 0.00 K intron_retention CG9684 chr3R - chr3R_4186465_4186521 chr3R_4186464_4186465;chr3R_4186521_4186522 chr3R_4186286_4186464;chr3R_4186522_4187403 0.00 0.00 0.00 22.22 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 8.89 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 2.63 NA NA NA NA NA NA NA 3.33 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA NA K alternative_acceptor CG14235,noncoding_24847,CG18809,noncoding_24848 chrX - chrX_19635236_19638294;chrX_19635199_19638294 chrX_19635202_19638294 chrX_19638295_19638317;chrX_19634765_19635198 39.75 38.91 39.72 41.09 38.03 36.13 40.32 36.78 38.06 42.86 37.87 40.27 38.25 39.23 34.56 41.69 41.01 36.26 39.79 40.07 36.15 42.37 40.67 38.97 41.38 40.38 35.82 38.52 47.44 37.69 42.49 35.26 53.62 39.04 44.09 45.76 39.75 33.50 38.41 35.59 46.25 36.55 42.63 40.17 43.36 45.83 38.49 43.86 39.63 43.35 38.41 42.46 39.39 40.00 43.04 35.14 38.28 41.71 K intron_retention nrv2,I_chr2L_6791842_6794492,I_chr2L_6793397_6794492,I_chr2L_6793405_6793916,I_chr2L_6793405_6794499,I_chr2L_6793684_6794492 chr2L - chr2L_6793405_6794492 chr2L_6793404_6793405;chr2L_6794492_6794493 chr2L_6793305_6793404;chr2L_6794493_6794592 0.00 0.00 0.00 0.00 0.00 0.00 7.14 2.56 5.71 0.00 NA 2.94 0.00 0.00 0.00 3.03 5.56 3.70 0.00 2.50 0.00 0.00 4.17 4.26 0.00 0.00 6.06 NA 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 3.61 6.45 1.69 4.00 0.00 0.00 3.28 2.50 2.44 1.41 0.00 0.00 0.00 0.00 0.00 0.00 2.50 3.92 7.27 K intron_retention CG10103,noncoding_10997 chr3L - chr3L_6748224_6748519 chr3L_6748223_6748224;chr3L_6748519_6748520 chr3L_6748173_6748223;chr3L_6748520_6749258 8.51 9.84 12.33 15.94 14.29 8.77 14.06 12.50 19.19 3.51 8.51 7.87 20.51 15.38 8.54 16.67 11.67 3.17 13.21 6.36 9.46 3.57 11.54 7.02 3.85 8.77 10.39 12.90 5.00 4.48 14.75 7.14 2.94 9.38 5.56 8.00 5.80 11.11 7.79 10.81 2.94 10.66 9.30 7.32 4.13 5.79 5.26 6.00 14.00 4.12 13.21 5.00 5.66 7.58 7.79 10.42 5.95 4.10 K intron_retention gammaTub23C,CG3165 chr2L + chr2L_2973108_2973165 chr2L_2973107_2973108;chr2L_2973165_2973166 chr2L_2972977_2973107;chr2L_2973166_2973368 0.00 0.00 0.00 7.46 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 1.52 2.38 9.52 3.64 5.71 6.67 0.00 9.09 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.98 0.00 6.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3860,RI_chr2R_19882285_19882350 chr2R - chr2R_19882443_19882498 chr2R_19882442_19882443;chr2R_19882498_19882499 chr2R_19882351_19882442;chr2R_19882499_19882557 100.00 93.33 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 96.97 100.00 94.12 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 91.67 100.00 100.00 91.67 92.86 95.45 NA 100.00 92.86 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Myo61F,mtacp1,I_chr3L_1330291_1330865,I_chr3L_1330291_1331279,RI_chr3L_1330929_1331041,l(3)02640 chr3L + chr3L_1330965_1331279 chr3L_1330964_1330965;chr3L_1331279_1331280 chr3L_1330866_1330964;chr3L_1331280_1331379 1.75 1.74 2.92 0.20 2.04 2.05 1.28 1.39 1.58 0.00 3.09 1.88 1.18 1.85 0.76 2.16 0.66 1.91 2.82 2.42 2.86 4.35 1.75 1.02 1.20 2.51 2.59 2.89 1.21 1.54 1.89 3.80 1.52 3.12 2.17 1.23 2.15 0.95 2.16 2.44 1.81 2.14 3.08 0.00 1.62 2.04 1.05 0.91 1.51 0.80 1.89 1.55 1.69 0.88 0.89 1.47 1.71 3.20 K intron_retention CHOp24,CG3568 chrX + chrX_4435178_4435249 chrX_4435177_4435178;chrX_4435249_4435250 chrX_4434950_4435177;chrX_4435250_4435584 0.00 0.00 0.00 0.88 1.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 1.08 0.49 0.00 0.89 0.00 0.48 0.00 1.08 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Gos28,CG31231 chr3R + chr3R_14489790_14490330 chr3R_14489789_14489790;chr3R_14490330_14490331 chr3R_14489605_14489789;chr3R_14490331_14490719 13.21 12.16 18.18 12.00 17.86 21.43 24.32 17.65 16.50 15.56 10.87 27.16 57.69 20.00 15.00 13.21 17.02 17.50 12.50 17.53 15.00 9.38 8.18 8.47 8.00 16.28 16.19 14.29 17.00 8.57 23.08 12.09 9.20 18.57 8.45 13.04 14.75 13.58 11.40 10.34 11.00 18.95 18.00 9.30 12.61 12.78 8.65 8.13 13.70 7.69 9.18 21.28 8.82 10.71 16.07 9.17 9.76 7.41 K intron_retention CG7861 chr2R + chr2R_1930529_1930597 chr2R_1930528_1930529;chr2R_1930597_1930598 chr2R_1930214_1930528;chr2R_1930598_1931070 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention trc,I_chr3L_19826244_19826323 chr3L - chr3L_19824416_19825124 chr3L_19824415_19824416;chr3L_19825124_19825125 chr3L_19824347_19824415;chr3L_19825125_19825270 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG1646,RI_chr3R_24638061_24638116,RI_chr3R_24638209_24638280,I_chr3R_24641816_24641874 chr3R + chr3R_24637877_24637948;chr3R_24637877_24637958 chr3R_24637877_24638116 chr3R_24637841_24637876;chr3R_24638117_24638208 91.94 88.89 87.67 87.74 92.73 93.88 78.85 87.67 92.68 96.23 90.16 94.78 85.00 87.76 91.89 90.00 90.00 93.94 91.94 94.19 93.33 86.44 87.50 87.69 87.76 82.89 84.09 86.11 93.98 96.51 87.91 97.65 95.57 91.76 92.00 76.79 94.64 91.94 91.57 93.69 96.43 92.86 91.49 93.33 93.10 97.33 93.75 97.59 93.15 94.59 88.71 91.14 93.75 93.75 93.62 91.11 89.58 98.15 K jcn_only_AA rgn chr3L + chr3L_21413463_21413564 chr3L_21413463_21413540 chr3L_21413351_21413462;chr3L_21413565_21413789 14.29 6.67 7.69 41.67 10.34 8.00 NA 25.00 14.29 9.09 NA 17.46 8.33 8.70 2.78 16.67 25.00 7.41 13.79 23.21 NA 10.20 11.36 14.81 27.27 NA 22.22 NA NA 13.64 14.29 9.09 23.33 13.95 18.52 15.00 10.81 3.85 15.38 27.42 NA 10.45 23.81 14.55 14.29 14.29 8.57 17.65 6.98 NA 17.02 NA NA 9.52 17.95 34.78 NA 18.52 K intron_retention CG5789,I_chr3R_20367337_20369421 chr3R - chr3R_20362945_20363008 chr3R_20362944_20362945;chr3R_20363008_20363009 chr3R_20361926_20362944;chr3R_20363009_20363705 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 2.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Pp2A-29B,I_chr2L_8367210_8367311,I_chr2L_8369561_8369715,RI_chr2L_8369761_8369827 chr2L + chr2L_8369031_8369715 chr2L_8369561_8369715 chr2L_8369716_8369760;chr2L_8368758_8369030 3.05 2.30 3.23 2.06 2.27 2.73 2.62 3.10 2.19 2.86 2.76 3.19 2.91 3.85 2.33 5.28 1.24 3.88 2.48 3.92 3.03 5.43 2.92 2.69 2.99 3.68 3.44 8.82 4.49 2.74 2.27 5.15 9.18 2.80 4.41 3.92 2.75 2.36 4.33 5.68 5.15 2.24 1.33 1.81 7.76 5.16 4.20 8.05 3.05 2.39 2.67 3.16 3.37 3.45 3.24 2.65 2.05 7.07 K intron_retention CG3287,I_chr2R_2700203_2700285 chr2R + chr2R_2701259_2701541 chr2R_2701258_2701259;chr2R_2701541_2701542 chr2R_2700678_2701258;chr2R_2701542_2702327 1.06 0.00 1.96 0.00 0.00 0.00 2.90 1.98 0.00 0.00 0.00 0.00 5.08 0.00 4.00 1.27 2.27 0.00 2.78 1.54 0.00 2.11 0.00 3.57 4.35 3.57 2.50 6.78 9.21 0.00 0.00 0.00 1.06 4.63 0.00 0.00 0.00 0.00 3.85 2.82 1.55 1.83 2.13 3.12 1.87 1.41 0.00 2.17 0.95 0.00 2.70 0.00 0.00 0.00 0.00 0.00 3.39 0.91 K alternative_acceptor CG14782,mei-38 chrX + chrX_1371322_1371408 chrX_1371322_1371405 chrX_1371127_1371321;chrX_1371409_1372262 4.32 8.11 3.23 3.45 5.00 0.00 6.90 5.26 9.62 0.00 5.88 2.08 4.76 3.85 3.12 5.26 NA 4.35 0.00 2.63 3.85 9.68 4.44 5.13 4.00 2.94 6.98 14.29 18.52 8.00 4.35 5.08 7.14 6.90 0.00 2.22 5.00 3.23 6.00 6.02 5.45 3.23 3.03 0.00 4.55 3.75 2.33 3.66 1.61 2.56 5.88 3.03 2.78 1.85 6.67 2.44 4.35 4.30 K intron_retention CG1746,I_chr3R_27044771_27044867,I_chr3R_27044771_27044990,I_chr3R_27044771_27045027,RI_chr3R_27044771_27045110,I_chr3R_27044771_27045132,RI_chr3R_27044771_27045188,I_chr3R_27044771_27045193,RI_chr3R_27044771_27045268 chr3R - chr3R_27044771_27044831 chr3R_27044770_27044771;chr3R_27044831_27044832 chr3R_27044671_27044770;chr3R_27044832_27045273 63.64 NA NA NA NA NA 52.63 75.00 70.59 NA NA 77.78 NA NA NA 73.33 NA 50.00 60.00 69.23 NA NA NA 80.00 NA 60.00 63.64 NA 82.35 55.56 NA 72.73 40.00 41.67 NA 66.67 55.56 NA NA 56.25 36.36 56.25 NA 25.00 NA NA 77.78 NA 90.91 NA NA NA NA NA 63.64 70.00 NA 50.00 K intron_retention Csk,I_chr3R_7463337_7463512,I_chr3R_7468928_7472509 chr3R - chr3R_7461692_7461746 chr3R_7461691_7461692;chr3R_7461746_7461747 chr3R_7461423_7461691;chr3R_7461747_7461966 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.29 0.00 1.08 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 2.82 0.00 0.00 0.00 0.62 0.77 0.83 0.00 0.56 0.62 0.65 1.25 0.00 0.00 0.78 0.63 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 K intron_retention CG13074 chr3L - chr3L_16089102_16089161 chr3L_16089101_16089102;chr3L_16089161_16089162 chr3L_16089004_16089101;chr3L_16089162_16089256 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Tfb1 chr2R + chr2R_10250584_10250756 chr2R_10250584_10250749 chr2R_10250565_10250583;chr2R_10250757_10251018 95.45 NA NA 100.00 NA 90.48 NA 97.06 NA NA NA 95.45 NA NA 90.00 NA NA NA NA 96.30 NA NA NA NA NA NA NA NA NA NA NA NA NA 95.83 NA NA NA NA NA 72.73 NA 97.14 NA NA 94.29 NA NA NA 88.24 NA NA NA NA NA NA NA NA NA K alternative_donor CE_chrX_20766225_20927825,CG1529,RI_chrX_20902550_20902613 chrX - chrX_20902550_20902613 chrX_20902550_20902601 chrX_20902450_20902549;chrX_20902614_20902713 0.00 0.00 0.00 5.00 0.00 0.00 0.00 8.33 2.70 0.00 0.00 0.00 NA NA 5.56 0.00 6.67 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 2.17 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 3.57 K intron_retention Ddip2,I_chr3L_252776_253313 chr3L - chr3L_252051_252111 chr3L_252050_252051;chr3L_252111_252112 chr3L_251390_252050;chr3L_252112_252463 0.00 0.00 0.00 3.77 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Tango5,noncoding_22970,I_chrX_10659836_10661185 chrX - chrX_10656468_10658389;chrX_10656468_10658117 chrX_10656468_10658202 chrX_10656442_10656467;chrX_10658390_10658400 96.77 91.49 98.85 100.00 98.57 94.59 98.78 99.04 99.45 97.83 94.57 96.93 98.21 98.57 100.00 97.75 97.22 98.61 97.80 98.58 100.00 93.58 97.78 95.05 98.18 92.68 94.59 88.00 85.71 90.16 96.91 91.18 97.10 97.46 96.15 83.33 95.80 100.00 95.45 93.75 94.12 95.32 96.67 92.86 95.08 78.26 86.11 98.25 96.38 100.00 93.94 98.41 96.77 88.89 99.02 97.78 84.00 90.48 K alternative_acceptor CG6463,I_chr3L_10686961_10687096 chr3L - chr3L_10686961_10687096 chr3L_10686968_10687096 chr3L_10687097_10687196;chr3L_10686861_10686960 98.97 98.13 99.19 97.62 98.99 98.96 100.00 99.33 98.40 100.00 98.97 99.04 100.00 100.00 100.00 98.43 100.00 100.00 100.00 98.77 98.11 98.97 98.67 98.57 91.11 99.08 100.00 100.00 95.24 98.11 99.01 98.98 98.46 99.38 100.00 98.31 99.37 98.31 97.79 99.19 100.00 98.61 100.00 98.90 98.59 99.19 98.56 98.33 98.86 98.04 98.77 97.92 99.22 99.07 100.00 98.21 98.08 100.00 K intron_retention tay,RI_chrX_15779977_15780033,I_chrX_15779977_15780538,RI_chrX_15780874_15781045,I_chrX_15783766_15785978 chrX - chrX_15779977_15781045 chrX_15779976_15779977;chrX_15781045_15781046 chrX_15779877_15779976;chrX_15781046_15781068 71.43 NA NA NA NA NA 46.15 66.67 61.11 NA NA 71.43 87.50 80.00 NA 53.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA 70.00 NA NA NA NA NA NA NA NA NA NA NA 72.73 87.50 NA NA NA NA NA NA NA NA NA K intron_retention Aldh chr2L + chr2L_9390137_9390245 chr2L_9390136_9390137;chr2L_9390245_9390246 chr2L_9390040_9390136;chr2L_9390246_9390312 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 K alternative_acceptor Ssadh,RI_chr3R_21451890_21451963,I_chr3R_21452371_21452464,I_chr3R_21452407_21452453 chr3R - chr3R_21452386_21452453;chr3R_21452371_21452453 chr3R_21452368_21452453 chr3R_21452454_21452553;chr3R_21452307_21452367 80.77 100.00 56.25 73.33 NA NA 82.35 77.78 78.26 NA 91.67 77.27 83.33 85.71 81.82 70.59 NA 76.92 NA 80.00 NA 82.61 85.00 82.35 NA NA 80.95 80.00 NA 80.00 76.92 72.73 NA 87.50 91.67 73.68 73.91 75.00 89.47 73.68 NA 73.68 NA 76.92 62.50 80.95 85.00 92.31 85.00 69.23 80.77 NA 93.33 88.24 82.35 NA 80.00 87.50 K cassette Mob2,RI_chr3L_11520443_11527440,CE_chr3L_11520917_11527526,RE_chr3L_11520925_11527489,RI_chr3L_11535932_11545929 chr3L - chr3L_11520443_11527440 chr3L_11520443_11520554;chr3L_11520917_11527440 chr3L_11520555_11520916 chr3L_11520343_11520442;chr3L_11527441_11527462 98.96 100.00 98.59 98.13 98.25 98.39 98.66 100.00 99.46 100.00 99.07 96.88 98.48 98.59 100.00 97.30 98.67 100.00 98.91 97.89 97.59 98.14 96.30 100.00 100.00 100.00 100.00 98.77 100.00 98.91 96.81 98.59 99.15 99.32 98.89 100.00 100.00 98.08 98.59 99.32 99.05 99.32 98.51 98.55 100.00 99.12 98.61 100.00 99.39 100.00 98.96 100.00 97.22 98.04 98.95 100.00 100.00 100.00 K intron_retention exba,I_chr3R_1425087_1425925,I_chr3R_1425813_1426009,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1425813_1426009 chr3R_1425812_1425813;chr3R_1426009_1426010 chr3R_1425790_1425812;chr3R_1426010_1426024 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 98.59 96.88 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 95.00 100.00 100.00 100.00 100.00 100.00 95.45 97.56 100.00 100.00 100.00 100.00 98.21 96.88 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Ilp6,RI_chrX_2226173_2226308,I_chrX_2226173_2226571 chrX - chrX_2226173_2226376;chrX_2226173_2227352;chrX_2226173_2226571 chrX_2226173_2226308 chrX_2226073_2226172;chrX_2227353_2227719 0.00 0.00 0.00 1.06 1.23 1.82 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 1.15 1.61 0.00 1.49 0.00 0.00 0.00 6.25 0.85 0.00 0.00 0.00 0.00 0.00 4.88 0.00 0.00 0.00 0.00 0.00 1.85 2.04 0.82 0.00 0.00 0.00 5.36 0.00 0.00 0.00 3.57 2.82 1.23 0.00 1.32 0.00 0.00 4.35 0.00 1.49 0.00 0.00 0.88 0.00 K intron_retention PNGase,I_chr2R_1906759_1906817,I_chr2R_1906899_1906977 chr2R + chr2R_1907055_1907110 chr2R_1907054_1907055;chr2R_1907110_1907111 chr2R_1906978_1907054;chr2R_1907111_1907175 8.99 6.10 11.25 18.69 14.29 11.11 8.55 13.50 9.88 0.00 10.42 10.74 8.99 6.38 8.99 10.74 11.54 11.76 10.83 8.00 7.81 14.06 8.82 10.96 10.81 10.84 7.25 15.00 5.56 6.67 10.66 6.48 10.16 11.19 8.96 12.24 11.11 5.00 4.62 2.90 7.69 8.48 11.11 5.56 3.54 5.81 5.41 8.84 13.10 12.16 4.60 15.79 11.11 4.00 12.40 3.95 7.02 6.01 K intron_retention RpL32,I_chr3R_25871509_25871807 chr3R - chr3R_25871509_25871771 chr3R_25871508_25871509;chr3R_25871771_25871772 chr3R_25871409_25871508;chr3R_25871772_25871834 100.00 NA NA NA NA NA 100.00 NA NA 100.00 NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 NA 100.00 100.00 100.00 K intron_retention CG15611,I_chr2R_12996782_13000822 chr2R + chr2R_12997580_12997671 chr2R_12997579_12997580;chr2R_12997671_12997672 chr2R_12997448_12997579;chr2R_12997672_12998005 3.40 0.00 2.13 8.33 7.14 6.06 11.63 5.13 6.41 NA 0.00 7.55 0.00 0.00 2.94 5.66 6.67 3.23 10.81 8.33 0.00 NA 0.00 3.57 4.35 7.69 8.33 5.26 0.00 0.00 5.26 NA 0.00 7.41 0.00 NA 5.13 8.00 0.00 0.00 0.00 7.14 4.00 0.00 NA 3.85 0.00 NA 7.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 NA K intron_retention CG32441 chr3L + chr3L_21567787_21567843 chr3L_21567786_21567787;chr3L_21567843_21567844 chr3L_21567533_21567786;chr3L_21567844_21568011 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 2.13 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD U2af50,I_chrX_16252240_16252638 chrX - chrX_16252240_16252843 chrX_16252240_16252638 chrX_16252140_16252239;chrX_16252844_16253100 2.17 0.00 0.00 4.94 4.88 2.38 2.78 2.53 2.75 3.45 2.38 2.38 3.45 0.00 1.85 0.00 2.44 2.63 1.92 5.48 6.52 0.00 2.20 4.44 2.08 0.00 0.00 1.10 1.43 0.00 4.76 2.50 0.00 5.06 4.00 1.33 1.08 2.50 1.54 1.11 7.41 1.33 7.69 3.61 0.00 2.33 0.00 0.00 1.16 1.15 0.97 7.27 0.00 5.26 2.17 1.35 4.21 0.00 K intron_retention tra2,REFI_chr2R_10491644_10491701 chr2R - chr2R_10489948_10490008 chr2R_10489947_10489948;chr2R_10490008_10490009 chr2R_10489509_10489947;chr2R_10490009_10490381 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 4.92 0.00 0.00 0.00 3.19 0.00 0.00 0.00 0.00 0.00 0.00 3.23 2.86 5.71 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 1.85 NA 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 3.23 3.03 1.35 8.33 K alternative_donor RpL32,I_chr3R_25871509_25871807 chr3R - chr3R_25871509_25871771;chr3R_25871509_25871611;chr3R_25871509_25871583;chr3R_25871509_25871855 chr3R_25871509_25871851 chr3R_25871409_25871508;chr3R_25871856_25871862 1.43 1.12 1.39 1.43 1.30 1.19 1.23 1.06 1.23 2.41 1.60 1.21 0.95 0.69 0.91 0.92 1.01 1.23 1.00 1.21 1.43 2.48 2.24 1.58 1.96 1.25 1.89 1.85 3.33 4.09 1.26 2.02 3.98 1.43 3.20 2.57 1.26 1.57 1.29 1.60 3.04 1.14 1.40 2.42 2.19 3.36 1.54 3.52 0.83 1.38 1.55 2.30 1.16 1.64 1.19 2.18 1.23 3.37 N cassette Nos,I_chr2L_10826086_10826539 chr2L - chr2L_10818567_10822967 chr2L_10818567_10822106;chr2L_10822247_10822967 chr2L_10822107_10822246 chr2L_10818418_10818566;chr2L_10822968_10823002 66.66 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 28.57 33.33 NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Nc73EF,I_chr3L_16950628_16951334,I_chr3L_16950952_16952198,I_chr3L_16951588_16952198,I_chr3L_16951626_16952198,I_chr3L_16952138_16952198,I_chr3L_16952985_16955434,I_chr3L_16953768_16954599 chr3L + chr3L_16950628_16952198;chr3L_16950615_16952198 chr3L_16950606_16952198 chr3L_16952199_16952207;chr3L_16950580_16950605 3.85 4.35 11.63 8.11 7.69 14.81 6.67 7.84 0.00 NA NA 4.62 3.45 3.85 2.63 2.63 7.69 NA 0.00 2.44 3.12 3.12 9.52 0.00 6.90 NA 3.12 3.33 NA NA 10.00 NA NA 10.91 0.00 0.00 2.78 8.16 3.64 2.38 NA 5.00 4.55 0.00 0.00 3.85 7.41 NA 5.88 9.43 2.82 7.14 NA 0.00 6.25 2.56 0.00 NA K intron_retention pAbp,I_chr2R_14027838_14028996 chr2R + chr2R_14028922_14028992 chr2R_14028921_14028922;chr2R_14028992_14028993 chr2R_14028916_14028921;chr2R_14028993_14029177 0.00 2.11 0.00 5.94 1.92 0.00 6.31 3.90 0.87 0.00 0.00 1.98 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.93 0.00 1.17 0.00 0.00 1.75 9.80 3.51 5.30 2.04 2.04 0.00 0.00 3.23 0.00 0.00 8.64 0.00 0.00 0.00 1.94 5.71 2.48 0.00 0.00 0.00 0.00 0.00 4.76 1.57 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 6.67 K alternative_donor CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157794_157864 chr4 + chr4_162747_162825 chr4_162754_162825 chr4_162826_163517;chr4_160896_162746 100.00 100.00 100.00 100.00 96.43 100.00 98.70 100.00 100.00 94.12 100.00 98.72 97.22 100.00 100.00 100.00 100.00 100.00 100.00 98.80 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 94.74 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.94 100.00 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette G9a,I_chrX_145325_145634,I_chrX_145570_145634 chrX + chrX_145325_145634 chrX_145325_145383;chrX_145575_145634 chrX_145384_145574 chrX_145225_145324;chrX_145635_145734 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 92.86 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG6171,I_chr3R_11188806_11188873,CG34404,CG14868 chr3R - chr3R_11188806_11188873 chr3R_11188805_11188806;chr3R_11188873_11188874 chr3R_11188706_11188805;chr3R_11188874_11188973 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 97.92 94.44 100.00 97.87 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 96.30 93.33 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 K intron_retention M(2)21AB,I_chr2L_110878_111037,I_chr2L_112022_112689,RI_chr2L_132256_132482 chr2L + chr2L_110878_111906 chr2L_110877_110878;chr2L_111906_111907 chr2L_110778_110877;chr2L_111907_112019 3.20 2.16 4.08 2.71 1.80 3.03 9.55 3.98 3.69 2.33 3.03 5.71 5.88 6.15 4.43 4.74 3.10 4.73 3.39 3.30 2.84 3.12 2.89 4.17 4.24 3.85 3.08 4.59 4.26 2.99 3.30 1.63 1.83 3.17 3.47 2.72 4.15 2.34 5.02 4.74 0.00 3.05 1.89 3.54 1.72 2.98 0.00 3.05 4.60 3.20 4.45 2.99 2.31 3.31 3.17 4.38 4.51 1.01 K jcn_only_AD lark,noncoding_11093,REI_chr3L_7332718_7333975,RI_chr3L_7334219_7334452 chr3L + chr3L_7332718_7333975 chr3L_7333871_7333975 chr3L_7333976_7334075;chr3L_7332618_7332717 91.53 96.45 93.33 80.60 91.53 95.08 97.56 91.04 94.12 79.75 90.00 94.29 92.86 91.53 95.24 92.31 97.96 98.28 96.88 94.03 87.23 90.99 89.03 95.03 91.47 96.72 84.00 86.44 87.27 90.76 79.41 84.92 87.86 93.80 83.21 76.23 88.52 95.00 93.07 83.06 84.25 95.73 91.23 82.80 95.17 92.00 89.44 81.71 94.16 94.44 85.85 89.02 95.24 88.30 93.65 93.68 93.15 91.87 K alternative_acceptor key,I_chr2R_20674567_20674813,I_chr2R_20674654_20674897,RI_chr2R_20676692_20676888 chr2R - chr2R_20674567_20674813 chr2R_20674654_20674813 chr2R_20674814_20674879;chr2R_20674554_20674566 98.04 97.33 98.46 96.00 98.28 98.18 98.97 97.17 98.62 100.00 100.00 98.36 100.00 100.00 97.33 95.96 100.00 98.04 96.83 97.67 97.92 98.18 100.00 97.85 98.39 98.31 99.04 98.00 95.24 98.21 98.31 97.83 94.87 96.77 94.55 97.96 96.12 98.15 97.83 98.85 100.00 99.20 95.83 98.63 95.12 98.46 97.37 90.00 96.46 97.80 98.90 98.21 96.72 97.10 100.00 96.34 96.77 98.36 K jcn_only_AA KP78a,I_chr3R_7176882_7178734 chr3R - chr3R_7176882_7178734 chr3R_7176885_7178734 chr3R_7178735_7178834;chr3R_7176782_7176881 95.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 91.43 NA NA 95.00 NA NA NA 95.00 NA NA NA NA NA NA 92.00 NA NA 93.75 95.83 NA NA NA NA 95.00 NA NA 96.15 NA NA NA NA NA NA NA NA NA NA K alternative_donor CG14253,E_chr3R_22806425_22807258 chr3R + chr3R_22806824_22809684;chr3R_22806425_22809684 chr3R_22806314_22809684 chr3R_22809685_22809939;chr3R_22806256_22806313 0.00 0.00 0.00 0.00 1.59 0.00 0.56 0.38 0.00 0.00 0.00 0.45 0.93 0.00 0.00 0.00 0.00 0.84 0.00 0.39 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.74 0.00 1.30 0.52 0.00 0.00 2.50 0.00 0.00 1.12 0.00 0.45 0.00 0.00 0.00 0.00 0.00 1.04 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 K intron_retention Psi,I_chr2R_12753387_12753659 chr2R - chr2R_12754752_12754830 chr2R_12754751_12754752;chr2R_12754830_12754831 chr2R_12753660_12754751;chr2R_12754831_12755136 0.00 0.00 NA 0.00 NA NA NA 0.00 3.85 NA 0.00 0.00 NA NA 0.00 NA NA NA NA 5.71 NA 5.56 6.06 0.00 NA NA NA NA 9.09 0.00 NA 0.00 0.00 0.00 6.25 0.00 0.00 NA 0.00 10.71 NA 0.00 NA NA NA 0.00 NA 2.63 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 K jcn_only_AA CG9586 chr2L - chr2L_9165843_9165942 chr2L_9165873_9165942 chr2L_9165943_9166164;chr2L_9165830_9165842 0.00 0.00 0.64 0.52 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.35 0.00 0.72 0.61 0.00 0.00 0.00 0.80 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.48 0.56 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.43 0.37 0.45 0.34 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.41 0.22 0.38 K jcn_only_AD l(2)k01209,I_chr2R_13308079_13310771,I_chr2R_13309452_13310771,RI_chr2R_13310877_13311160 chr2R + chr2R_13309417_13311160;chr2R_13309452_13311160;chr2R_13308079_13311160 chr2R_13308486_13311160 chr2R_13311161_13311260;chr2R_13307979_13308078 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 K intron_retention CG5004,E_chrX_17024712_17024996 chrX + chrX_17019978_17020033 chrX_17019977_17019978;chrX_17020033_17020034 chrX_17019909_17019977;chrX_17020034_17020118 20.00 NA 11.76 15.79 NA NA NA 21.43 25.00 NA NA 20.00 29.41 NA NA NA 13.33 14.29 25.00 17.86 NA NA NA NA NA NA 87.50 NA NA NA NA NA NA 30.00 NA NA NA NA NA NA NA 25.81 NA NA NA NA NA NA 18.52 NA NA NA NA NA 15.79 NA NA NA K intron_retention CG14425,Sxl,CG14425_Sxl,CEF_chrX_6984538_6992033 chrX - chrX_6986204_6992033 chrX_6986203_6986204;chrX_6992033_6992034 chrX_6985707_6986203;chrX_6992034_6992068 25.84 NA NA 35.71 NA NA 13.04 25.00 31.03 NA NA 12.50 0.00 NA NA 33.33 NA NA 33.33 26.67 NA NA NA NA NA NA NA NA NA NA 14.29 NA 16.67 28.57 NA NA NA NA NA 14.29 NA 41.67 NA NA NA NA NA NA 20.00 NA NA NA NA NA 30.77 NA NA NA K alternative_acceptor KP78a,I_chr3R_7176882_7178734 chr3R - chr3R_7176882_7178734 chr3R_7176885_7178734 chr3R_7178735_7178834;chr3R_7176782_7176881 88.19 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 85.71 NA NA 87.50 NA NA NA 87.50 NA NA NA NA NA NA 88.89 NA NA 91.67 88.89 NA NA NA NA 87.50 NA NA 90.00 NA NA NA NA NA NA NA NA NA NA K intron_retention CG9153,Myo61F chr3L + chr3L_1314091_1314157 chr3L_1314090_1314091;chr3L_1314157_1314158 chr3L_1313975_1314090;chr3L_1314158_1314320 7.14 5.00 10.26 5.61 11.86 5.80 7.78 7.14 9.03 4.88 14.49 11.76 6.49 8.06 9.88 6.67 11.76 11.48 11.48 9.15 10.64 0.84 8.63 3.09 4.11 8.06 6.72 5.19 3.09 2.42 8.79 4.08 3.24 8.25 7.69 5.83 2.54 7.14 6.02 5.43 1.90 7.63 10.00 9.80 6.67 7.41 6.67 1.49 4.80 20.90 7.32 8.47 3.23 8.86 7.14 8.57 6.52 3.75 K alternative_donor gish chr3R + chr3R_12106734_12107802 chr3R_12106747_12107802 chr3R_12107803_12107810;chr3R_12106723_12106733 77.78 77.78 NA 71.43 NA NA 76.92 92.31 80.00 NA NA 70.59 77.78 NA 66.67 62.50 NA NA 66.67 77.42 NA 70.00 80.95 71.43 90.00 NA 83.33 83.33 84.62 65.00 81.25 87.50 91.67 87.50 82.35 66.67 66.67 NA 88.89 68.18 77.78 86.67 NA 79.17 87.50 73.33 NA 65.00 82.61 77.78 78.57 92.31 60.00 87.50 60.00 75.00 NA 56.25 K alternative_donor Fps85D,I_chr3R_5194729_5194776,I_chr3R_5216796_5218450 chr3R - chr3R_5216796_5218462 chr3R_5216796_5218450 chr3R_5216696_5216795;chr3R_5218463_5218550 0.00 1.79 0.00 2.82 0.00 0.00 0.00 1.30 0.69 0.00 0.00 0.00 0.00 0.00 1.32 1.72 0.00 0.00 0.00 1.57 2.17 0.00 0.92 1.25 1.92 2.00 1.59 0.00 2.90 1.75 0.00 0.00 1.75 0.00 0.00 2.78 0.95 0.00 1.19 1.22 2.63 0.00 2.13 0.95 0.00 2.27 0.00 2.13 0.91 0.00 3.49 0.00 0.00 0.00 0.00 0.00 3.51 0.00 K intron_retention Rab11,RE_chr3R_16939259_16939667 chr3R + chr3R_16940824_16940972 chr3R_16940823_16940824;chr3R_16940972_16940973 chr3R_16940475_16940823;chr3R_16940973_16941873 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.09 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.34 0.11 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.31 0.00 0.00 0.00 K intron_retention Irbp,Ranbp9 chr3R + chr3R_7241213_7241269 chr3R_7241212_7241213;chr3R_7241269_7241270 chr3R_7240738_7241212;chr3R_7241270_7241415 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG32809,I_chrX_1576304_1577129,I_chrX_1576463_1577129,I_chrX_1576815_1577129,I_chrX_1577031_1577129,CEI_chrX_1579569_1579679,RI_chrX_1585391_1586471,I_chrX_1589508_1589564 chrX - chrX_1576815_1577129 chrX_1576815_1576895;chrX_1576962_1577129 chrX_1576896_1576961 chrX_1576803_1576814;chrX_1577130_1577229 90.45 88.89 100.00 NA 100.00 88.89 100.00 90.00 95.00 85.71 100.00 92.86 NA 100.00 87.50 100.00 88.89 NA NA 94.74 88.89 NA NA 100.00 NA 85.71 87.50 NA NA 85.71 92.31 NA 85.71 90.91 90.00 100.00 100.00 NA 87.50 84.62 NA 100.00 NA 88.89 85.71 88.89 NA 88.89 94.12 85.71 100.00 100.00 NA NA 100.00 NA NA NA K multi_cassette lap,I_chr3R_3017854_3019314 chr3R + chr3R_3017854_3019314 chr3R_3017854_3018213;chr3R_3018377_3018442;chr3R_3018735_3019314 chr3R_3018214_3018376;chr3R_3018443_3018734 chr3R_3017754_3017853;chr3R_3019315_3019410 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention I_chr2R_2754447_2755071,Spn4,CG9454 chr2R - chr2R_2764239_2764725 chr2R_2764238_2764239;chr2R_2764725_2764726 chr2R_2764101_2764238;chr2R_2764726_2764867 60.00 66.67 42.86 54.55 77.78 61.11 52.17 65.62 65.00 29.41 90.00 70.97 60.00 71.43 71.43 76.19 56.25 81.25 66.67 57.89 55.56 55.56 59.09 57.14 50.00 66.67 55.00 53.33 57.14 58.82 80.00 52.38 40.91 67.74 50.00 81.82 56.25 66.67 72.00 53.19 63.64 70.97 60.00 76.47 40.00 44.83 70.00 63.16 61.29 62.50 47.83 52.94 59.26 60.00 64.71 65.00 59.09 29.41 N intron_retention CG32512 chrX - chrX_20934443_20934522 chrX_20934442_20934443;chrX_20934522_20934523 chrX_20933620_20934442;chrX_20934523_20934589 100.00 NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA 42.86 NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor gw,I_chr4_679135_681671,noncoding_20755 chr4 - chr4_682607_683578;chr4_682607_683596 chr4_682607_683702 chr4_682360_682606;chr4_683703_683710 60.00 NA NA 37.50 NA NA NA 77.78 50.00 NA NA NA NA NA NA 70.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 71.43 NA NA NA NA NA NA NA NA NA K alternative_last_exon scu chrX + chrX_17985424_17985984 chrX_17985424_17985587 chrX_17985985_17987490 chrX_17985588_17985687 chrX_17985361_17985423 1.47 0.96 0.93 1.95 1.07 1.65 2.07 1.19 1.18 0.62 0.00 1.75 2.27 1.96 2.40 4.85 0.65 1.12 1.73 1.11 0.61 3.68 1.16 1.41 0.91 1.52 1.09 2.50 2.03 2.67 6.77 2.58 3.96 1.53 2.26 1.42 0.60 0.00 0.62 3.72 1.27 1.58 1.36 1.54 2.97 2.96 0.99 4.27 1.36 0.34 1.48 0.62 1.67 1.47 1.37 0.90 0.53 3.54 K intron_retention CG42553,I_chr3L_834336_834491,F_chr3L_835436_835825 chr3L + chr3L_835331_835386 chr3L_835330_835331;chr3L_835386_835387 chr3L_834783_835330;chr3L_835387_835435 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9555,CG17906 chr2L + chr2L_8994785_8994924 chr2L_8994784_8994785;chr2L_8994924_8994925 chr2L_8994651_8994784;chr2L_8994925_8995026 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_last_exon AP-1sigma chr3R + chr3R_19785316_19786619;chr3R_19785316_19787772 chr3R_19785316_19785614 chr3R_19786620_19787225;chr3R_19787773_19788299 chr3R_19785615_19785954 chr3R_19785178_19785315 25.00 21.37 31.01 25.60 23.68 27.55 30.86 27.67 23.93 11.32 23.15 24.68 30.08 29.13 29.51 27.98 31.13 20.75 30.82 25.28 19.15 25.93 24.70 23.26 24.14 30.00 26.09 28.28 25.30 23.30 30.61 16.87 20.45 29.75 23.33 27.36 18.18 25.00 20.43 27.55 16.82 26.58 31.03 22.46 17.78 13.77 17.43 25.45 26.48 19.35 27.56 28.85 16.44 17.17 30.46 16.52 14.73 13.91 K intron_retention CG33523,RI_chr3L_5920177_5921323 chr3L + chr3L_5921741_5921803 chr3L_5921740_5921741;chr3L_5921803_5921804 chr3L_5921637_5921740;chr3L_5921804_5922139 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.88 3.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention tlk chrX + chrX_3671394_3675687 chrX_3671393_3671394;chrX_3675687_3675688 chrX_3671379_3671393;chrX_3675688_3677592 0.00 NA NA 5.56 NA NA NA 12.50 0.00 NA NA 14.29 NA NA NA 14.29 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 0.00 NA 0.00 14.29 NA 0.00 NA NA NA NA NA 0.00 12.50 NA NA NA NA NA NA NA NA NA K intron_retention gw,I_chr4_679135_681671 chr4 - chr4_673469_673526 chr4_673468_673469;chr4_673526_673527 chr4_673272_673468;chr4_673527_673677 0.00 0.00 0.00 1.95 0.00 0.00 0.76 1.18 0.65 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 1.12 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CanB2,CG12825 chr2R + chr2R_3675038_3675104 chr2R_3675038_3675095 chr2R_3674969_3675037;chr2R_3675105_3675170 100.00 100.00 98.80 99.27 100.00 100.00 100.00 100.00 100.00 97.50 100.00 99.19 100.00 98.59 100.00 99.15 100.00 100.00 98.73 99.45 98.70 98.25 98.65 100.00 98.04 98.72 100.00 97.92 98.04 100.00 100.00 98.31 100.00 100.00 98.15 98.48 98.63 100.00 98.77 98.95 100.00 100.00 100.00 98.67 98.51 100.00 100.00 100.00 99.31 100.00 100.00 100.00 96.61 100.00 100.00 100.00 98.80 99.09 K alternative_donor Lnk,RI_chr3R_21714780_21715376 chr3R + chr3R_21714419_21715376;chr3R_21714614_21715376 chr3R_21714788_21715376 chr3R_21715377_21715476;chr3R_21714271_21714418 0.00 0.00 2.38 1.92 0.00 0.00 3.12 1.49 1.11 0.00 0.00 1.39 0.00 2.50 2.63 2.99 0.00 0.00 0.00 1.03 0.00 0.00 1.82 0.00 4.17 0.00 1.85 2.86 3.57 0.00 1.45 0.00 3.03 1.41 0.00 0.00 2.38 2.70 0.00 1.59 0.00 0.00 2.78 2.56 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 2.86 0.00 2.56 K alternative_acceptor Pp1-87B chr3R - chr3R_8249909_8250332 chr3R_8250239_8250332 chr3R_8250333_8251639;chr3R_8249673_8249908 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.68 100.00 100.00 100.00 99.62 100.00 100.00 100.00 99.77 99.57 99.54 100.00 99.34 100.00 100.00 100.00 100.00 100.00 K intron_retention ATPsyn-beta chr4 + chr4_1052580_1053532 chr4_1052579_1052580;chr4_1053532_1053533 chr4_1052474_1052579;chr4_1053533_1053844 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.14 0.00 0.00 0.04 0.00 0.29 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor I_chr3R_1303481_1304607,CG31550 chr3R + chr3R_1312607_1312781 chr3R_1312607_1312772 chr3R_1312598_1312606;chr3R_1312782_1312899 90.91 78.57 84.62 100.00 100.00 88.89 93.33 93.75 80.00 NA NA 92.31 NA NA 91.67 92.31 100.00 90.91 90.00 88.24 NA NA 93.33 90.91 NA 100.00 90.00 NA 100.00 NA 88.89 NA 90.00 92.86 NA NA 92.31 NA 68.75 93.33 NA 87.50 87.50 86.67 83.33 83.33 100.00 NA 93.75 92.31 93.33 NA 87.50 NA 87.50 90.00 100.00 72.73 K alternative_donor RI_chr3R_7061265_7061322,CG31388 chr3R + chr3R_7064332_7064678 chr3R_7064623_7064678 chr3R_7064679_7064763;chr3R_7063775_7064331 71.43 NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 71.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA NA K intron_retention Cnx99A,I_chr3R_25142581_25142644,I_chr3R_25144335_25145173,I_chr3R_25145243_25145309,I_chr3R_25145256_25145426 chr3R - chr3R_25142088_25142441 chr3R_25142087_25142088;chr3R_25142441_25142442 chr3R_25141959_25142087;chr3R_25142442_25142582 0.78 0.72 0.42 0.92 0.53 0.00 1.59 0.72 0.93 1.91 0.24 0.92 0.58 0.00 0.39 1.24 0.84 1.01 0.00 0.53 0.92 2.22 1.02 0.91 0.24 0.29 1.11 1.50 1.07 0.62 0.84 0.75 0.30 0.86 0.59 3.93 0.83 0.34 0.51 0.56 1.57 0.78 0.00 0.88 1.59 0.55 0.67 1.24 0.42 1.05 1.34 0.66 0.00 0.80 0.78 0.68 0.64 1.20 K alternative_acceptor CG8726 chr2R - chr2R_3857956_3858036 chr2R_3857980_3858036 chr2R_3858037_3858218;chr2R_3857740_3857955 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 K alternative_donor CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2435133_2439498;chr3L_2436229_2439498 chr3L_2439416_2439498 chr3L_2439499_2439583;chr3L_2434626_2435132 0.77 1.27 1.54 0.78 0.00 1.82 0.94 0.98 0.63 0.00 2.08 0.81 2.00 0.00 1.49 1.49 1.89 1.72 1.75 0.77 2.08 0.35 0.52 0.79 0.89 1.56 0.78 0.78 0.58 0.74 0.00 0.00 0.43 2.15 0.00 0.68 0.55 0.00 0.59 0.50 0.00 0.78 1.96 0.68 0.00 1.12 0.00 0.55 0.94 1.02 0.74 1.49 0.00 0.00 1.25 0.00 0.00 0.00 K jcn_only_AD CG12576,RI_chrX_21878289_21882347,I_chrX_21882735_21882809,I_chrX_21882735_21883407,I_chrX_21882735_21883467,I_chrX_21882735_21883620,I_chrX_21882735_21883714 chrX - chrX_21882735_21882809;chrX_21882735_21883714;chrX_21882735_21883467 chrX_21882735_21883750 chrX_21882635_21882734;chrX_21883751_21883814 97.73 95.45 97.10 96.03 98.51 95.38 95.88 96.70 98.21 98.11 98.77 94.62 97.56 94.32 98.77 96.03 100.00 93.15 97.98 97.90 97.53 98.45 97.41 98.48 95.92 95.83 100.00 100.00 98.08 96.12 92.47 98.51 100.00 99.32 95.45 100.00 100.00 100.00 97.53 99.12 97.14 98.55 97.18 96.64 98.77 97.41 98.77 99.41 95.98 94.44 98.88 96.88 98.15 97.73 97.96 97.40 95.52 98.89 K intron_retention F_chr2R_18805721_18805778,Nup214,I_chr2R_18820842_18820922 chr2R - chr2R_18809465_18809520 chr2R_18809464_18809465;chr2R_18809520_18809521 chr2R_18808269_18809464;chr2R_18809521_18809862 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention tho2 chr2L - chr2L_2137927_2137983 chr2L_2137926_2137927;chr2L_2137983_2137984 chr2L_2137883_2137926;chr2L_2137984_2138155 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 4.44 NA 12.50 3.85 0.00 0.00 0.00 0.00 0.00 2.86 0.00 5.88 0.00 0.00 7.69 0.00 6.90 7.41 9.68 0.00 35.48 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 4.17 20.00 7.58 7.69 0.00 1.96 6.52 0.00 0.00 1.72 4.17 0.00 8.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention E_chr3R_6935653_7037028,nocturnin,RI_chr3R_7026291_7032627,I_chr3R_7029508_7030286 chr3R + chr3R_7032861_7032914 chr3R_7032860_7032861;chr3R_7032914_7032915 chr3R_7032628_7032860;chr3R_7032915_7032977 0.00 0.00 0.00 8.11 0.00 0.00 2.33 2.38 0.00 0.00 12.50 6.06 9.38 0.00 0.00 3.64 4.00 0.00 11.11 0.00 5.71 0.00 0.00 2.56 0.00 26.67 9.76 NA 9.09 0.00 7.84 NA 0.00 0.00 10.00 8.33 3.45 0.00 8.16 0.00 20.00 0.00 0.00 3.70 0.00 0.00 6.67 0.00 5.71 0.00 0.00 0.00 2.56 0.00 0.00 0.00 3.57 0.00 K intron_retention per,noncoding_21656 chrX + chrX_2586424_2586509 chrX_2586423_2586424;chrX_2586509_2586510 chrX_2586241_2586423;chrX_2586510_2586698 23.41 NA NA NA NA NA NA NA 19.05 NA NA 15.00 NA NA NA NA NA NA NA 27.78 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 27.78 NA NA 13.33 NA NA NA 30.77 NA NA NA NA NA NA NA NA NA K alternative_donor CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042891_5042960;chr2L_5042891_5043077 chr2L_5042891_5042983 chr2L_5042835_5042890;chr2L_5043078_5043083 12.50 12.73 12.07 15.28 13.51 16.67 10.47 10.98 12.60 17.24 12.12 12.96 7.69 8.62 12.73 11.40 20.83 13.16 18.64 10.22 22.22 9.30 6.90 9.43 9.76 14.89 10.87 16.67 17.14 14.29 13.56 12.82 17.50 12.09 9.30 14.63 8.16 11.11 8.16 18.18 12.50 7.45 12.50 9.38 10.64 13.89 7.84 7.69 13.13 10.20 11.86 14.89 14.71 11.76 14.93 8.33 3.64 12.50 K jcn_only_AA B4,I_chr2L_13513474_13549131,I_chr2L_13547133_13549131,I_chr2L_13547162_13547692,I_chr2L_13547304_13549131 chr2L - chr2L_13547304_13549131;chr2L_13547133_13549131 chr2L_13547162_13549131 chr2L_13549132_13549231;chr2L_13547062_13547132 74.36 67.74 56.67 80.49 78.26 62.50 66.67 72.50 75.00 79.17 NA 55.00 NA NA 44.44 68.18 48.00 NA 65.62 84.91 75.00 86.49 76.79 83.64 84.85 68.00 74.36 75.00 78.38 81.13 63.89 NA 62.86 61.11 80.00 75.68 78.38 71.43 78.85 86.21 72.09 73.81 68.18 82.22 72.73 81.97 81.58 83.33 68.09 77.14 79.49 73.91 NA 70.97 56.10 55.56 65.62 74.36 K intron_retention CG17721,RI_chr3R_7061265_7061322 chr3R + chr3R_7061229_7061322 chr3R_7061228_7061229;chr3R_7061322_7061323 chr3R_7061165_7061228;chr3R_7061323_7061422 6.15 7.69 3.23 9.68 0.00 8.33 5.00 4.76 9.52 6.82 5.00 10.00 0.00 9.09 6.90 16.00 13.64 NA 0.00 11.76 8.70 8.00 0.00 5.26 6.06 0.00 5.56 3.70 10.71 5.00 6.25 10.00 NA 6.67 NA 7.41 4.00 6.45 2.94 6.98 10.00 5.41 4.35 0.00 10.34 5.77 6.67 3.33 10.34 0.00 4.76 0.00 0.00 8.33 13.04 6.00 3.45 8.00 K alternative_acceptor Eph,I_chr4_631523_634240,I_chr4_632065_634240,I_chr4_632433_632707,I_chr4_632433_632988,I_chr4_639690_640473,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_632433_634240 chr4_632433_632707 chr4_632353_632432;chr4_634241_634340 4.79 4.00 4.65 12.50 2.78 2.86 10.00 3.57 5.10 0.00 3.45 4.82 4.35 7.14 2.22 5.26 4.44 0.00 4.00 5.88 2.56 9.09 1.85 3.45 4.00 4.44 6.67 22.22 9.09 0.00 5.71 12.50 7.69 6.35 5.56 5.56 2.56 3.85 3.03 3.57 14.29 5.56 5.13 4.76 10.00 4.55 10.00 0.00 4.88 20.00 4.65 3.85 NA 10.00 4.88 5.00 0.00 20.00 K intron_retention Graf,RI_chrX_15652351_15654288,RI_chrX_15652363_15654157,RI_chrX_15652363_15654499,RI_chrX_15654228_15654288 chrX - chrX_15648806_15649136 chrX_15648805_15648806;chrX_15649136_15649137 chrX_15648519_15648805;chrX_15649137_15649180 23.81 21.43 23.81 30.77 NA 33.33 23.33 18.37 26.47 NA 33.33 24.24 56.25 27.27 20.00 25.64 9.09 26.67 18.18 19.51 28.57 15.79 46.15 46.15 NA 30.77 35.71 NA 12.50 12.50 21.43 13.64 10.00 27.50 12.50 36.36 NA NA NA 11.76 NA 17.65 22.73 14.29 NA 7.41 NA 16.67 28.21 30.77 26.67 25.00 NA NA 32.00 NA NA 11.43 K jcn_only_AA Su(var)2-10,RI_chr2R_5006333_5006392 chr2R + chr2R_5006178_5006243 chr2R_5006178_5006225 chr2R_5006021_5006177;chr2R_5006244_5006332 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 1.10 0.00 0.81 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 1.03 0.00 0.00 0.00 0.00 0.55 K intron_retention G-salpha60A chr2R + chr2R_19832427_19832482 chr2R_19832426_19832427;chr2R_19832482_19832483 chr2R_19832330_19832426;chr2R_19832483_19832603 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 NA 0.00 5.71 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 1.85 0.00 9.52 0.00 0.00 0.00 0.00 0.00 0.00 12.50 0.00 0.00 0.00 0.00 6.06 0.00 0.00 0.00 0.00 0.00 0.00 4.76 1.06 0.00 0.00 0.00 NA 0.00 0.00 6.67 2.63 0.00 K alternative_acceptor mub,RI_chr3L_21901021_21901163,I_chr3L_21908756_21909179 chr3L + chr3L_21914088_21914192;chr3L_21914088_21914156;chr3L_21914088_21914141 chr3L_21914088_21914153 chr3L_21914067_21914087;chr3L_21914193_21914427 13.33 18.18 10.00 15.00 28.57 25.00 15.38 11.11 12.00 12.50 14.29 5.71 17.65 12.50 15.79 11.11 27.27 5.88 NA 15.22 19.05 14.63 11.11 17.50 15.62 23.08 12.90 10.53 10.53 17.24 13.33 18.18 5.56 12.50 10.00 4.17 10.61 10.00 20.45 15.22 21.43 4.35 15.38 6.06 13.33 16.67 14.29 17.39 8.57 6.90 10.81 15.38 11.76 16.00 12.50 18.18 11.54 0.00 K jcn_only_AD E_chr2RHet_2881760_2912543,eIF-4B,I_chr2RHet_2903246_2912532,I_chr2RHet_2912605_2917250 chr2RHet + chr2RHet_2901839_2902093 chr2RHet_2902034_2902093 chr2RHet_2902094_2902500;chr2RHet_2901816_2901838 2.25 2.63 1.18 5.24 2.25 0.00 1.85 3.52 1.97 NA 1.96 2.50 0.00 3.79 1.74 1.97 1.77 0.91 2.24 0.00 1.11 3.33 4.00 10.71 0.00 1.27 4.17 0.00 9.30 2.94 9.09 0.00 0.00 1.86 12.50 2.78 5.66 NA 0.00 8.47 0.00 1.42 2.91 8.33 0.00 3.45 7.41 2.50 2.73 4.08 9.62 3.33 1.18 3.57 0.76 0.00 6.45 1.67 K intron_retention Rheb,CRMP chr3R + chr3R_1394762_1394927 chr3R_1394761_1394762;chr3R_1394927_1394928 chr3R_1394655_1394761;chr3R_1394928_1394993 98.15 95.56 98.18 100.00 96.43 97.50 100.00 98.88 98.04 100.00 97.50 100.00 100.00 100.00 100.00 95.83 97.56 100.00 98.31 99.25 100.00 98.08 100.00 97.37 100.00 100.00 97.50 100.00 96.15 98.04 100.00 93.88 95.45 98.61 100.00 97.50 96.55 95.65 96.43 93.75 98.15 100.00 97.78 98.18 97.56 94.44 98.41 98.28 98.91 100.00 95.74 96.88 96.67 97.22 98.15 100.00 95.74 98.70 K alternative_donor Vha55 chr3R - chr3R_8453298_8453399 chr3R_8453298_8453361 chr3R_8453171_8453297;chr3R_8453400_8453468 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.47 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.82 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention B4,REI_chr2L_13509793_13534906,EI_chr2L_13513471_13534906,I_chr2L_13513474_13549131,I_chr2L_13547304_13549131 chr2L - chr2L_13509793_13512959 chr2L_13509792_13509793;chr2L_13512959_13512960 chr2L_13509741_13509792;chr2L_13512960_13513464 1.02 1.10 0.00 5.00 3.33 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.69 0.00 1.48 0.32 0.72 0.00 0.00 1.52 8.59 2.06 1.52 0.00 0.00 1.64 1.39 0.00 0.82 1.19 0.76 1.07 2.53 0.76 1.23 2.56 1.55 1.08 1.50 1.14 0.00 2.44 1.42 1.03 0.00 1.52 2.23 0.00 1.02 1.36 3.39 K intron_retention Indy chr3L - chr3L_18824722_18825046 chr3L_18824721_18824722;chr3L_18825046_18825047 chr3L_18824595_18824721;chr3L_18825047_18825084 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 1.89 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7188 chr3L - chr3L_8300833_8300893 chr3L_8300832_8300833;chr3L_8300893_8300894 chr3L_8300825_8300832;chr3L_8300894_8301064 62.50 NA 46.15 73.33 NA NA 62.50 NA 42.86 NA NA 50.00 66.67 NA NA 88.89 NA NA NA 63.64 NA 40.00 NA NA 88.89 NA 57.14 47.83 NA NA NA NA NA NA NA NA NA NA NA NA NA 63.64 NA NA NA NA NA NA 71.43 50.00 NA NA NA NA NA 70.00 53.33 NA K intron_retention Lac,I_chr2R_8341560_8351848,RE_chr2R_8341564_8351844,I_chr2R_8348603_8351844 chr2R + chr2R_8341364_8351969 chr2R_8341363_8341364;chr2R_8351969_8351970 chr2R_8340696_8341363;chr2R_8351970_8353154 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.95 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Cep135,RI_chr3L_15120510_15120565 chr3L + chr3L_15120385_15120565 chr3L_15120510_15120565 chr3L_15120566_15120665;chr3L_15120117_15120384 5.81 NA 6.45 4.17 NA 0.00 11.11 8.11 4.76 NA NA 0.00 NA 7.69 13.04 7.69 0.00 14.29 17.24 1.96 NA 32.00 13.04 10.00 NA 4.00 14.29 NA 3.85 0.00 0.00 6.06 3.57 6.45 NA 15.00 4.55 NA 20.00 8.51 5.56 9.76 NA NA 0.00 4.65 NA 0.00 8.11 12.90 4.35 NA NA NA 0.00 0.00 NA 0.00 K alternative_donor CG4699 chr3R + chr3R_11624200_11624442;chr3R_11624133_11624442;chr3R_11624190_11624442 chr3R_11624127_11624442 chr3R_11624443_11624758;chr3R_11623809_11624126 18.00 22.22 20.37 26.37 26.42 20.83 9.23 14.63 15.74 19.44 18.75 14.89 9.52 18.00 16.90 23.53 14.00 22.50 15.79 21.49 13.95 8.57 23.76 20.99 20.75 12.24 15.29 23.81 18.69 14.53 17.86 23.08 15.73 21.69 14.81 23.38 23.36 21.43 26.09 2.68 13.64 16.24 9.30 23.46 17.39 13.19 12.96 19.60 16.51 20.00 13.16 14.58 21.21 16.00 17.54 26.98 21.28 18.05 K jcn_only_AD e(y)3,I_chrX_19530503_19530884,I_chrX_19530503_19531405 chrX - chrX_19530503_19530884;chrX_19530503_19531405;chrX_19530503_19532222 chrX_19530503_19531650 chrX_19530403_19530502;chrX_19532223_19532322 71.15 77.78 79.17 70.37 64.71 81.36 75.00 70.24 70.87 66.07 71.43 71.74 75.51 81.25 74.55 79.31 69.23 75.00 77.08 72.28 88.24 73.77 73.33 71.88 62.07 68.42 74.58 50.00 57.14 63.46 73.58 79.17 59.26 66.28 66.00 74.00 78.00 80.00 69.01 62.50 55.00 70.10 54.17 84.62 56.52 48.84 64.29 54.17 69.07 88.00 67.61 81.82 70.37 NA 63.64 78.26 87.50 57.89 K intron_retention RpII15 chr3R + chr3R_10134845_10134899 chr3R_10134844_10134845;chr3R_10134899_10134900 chr3R_10134776_10134844;chr3R_10134900_10135970 8.01 NA 0.00 7.14 11.11 6.67 10.53 8.70 13.16 NA 8.33 9.52 NA NA 7.69 7.69 NA 6.25 0.00 7.69 15.38 NA NA NA NA 10.00 50.00 54.55 63.64 NA 5.56 NA NA 6.67 NA NA 0.00 NA NA 10.34 NA 5.71 12.50 7.14 0.00 NA NA NA 5.88 12.50 NA NA NA NA 14.29 NA 11.11 0.00 K alternative_acceptor RI_chr2R_12912984_12913058,RhoGEF2 chr2R + chr2R_12916527_12918637 chr2R_12916527_12918629 chr2R_12916364_12916526;chr2R_12918638_12919153 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 NA 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 K alternative_last_exon CG13784,I_chr2L_7209439_7209522,I_chr2L_7219131_7219918 chr2L - chr2L_7208582_7218908;chr2L_7209654_7218908 chr2L_7218854_7218908 chr2L_7208417_7208581;chr2L_7209349_7209653 chr2L_7218643_7218853 chr2L_7218909_7219130 25.00 21.43 41.18 25.00 21.43 35.71 39.13 28.57 46.88 31.58 30.00 25.00 33.33 52.94 20.00 58.33 25.00 33.33 52.94 34.78 27.27 27.78 18.18 29.41 11.76 16.67 14.29 14.29 21.05 13.04 38.46 22.22 12.00 48.28 38.89 5.88 15.38 21.43 17.24 22.58 15.38 25.81 33.33 12.00 9.09 28.57 18.18 24.00 39.29 60.00 19.05 16.67 40.00 20.00 26.67 22.22 28.57 18.75 K alternative_donor CG13689 chr2L + chr2L_602950_603073 chr2L_603007_603073 chr2L_603074_603562;chr2L_602813_602949 100.00 100.00 85.71 100.00 NA NA 90.00 92.86 92.31 NA NA 100.00 100.00 NA 100.00 90.00 100.00 87.50 100.00 100.00 NA NA 100.00 NA NA 88.89 NA NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 NA NA 100.00 92.86 88.89 100.00 NA 100.00 NA 100.00 100.00 92.86 100.00 90.00 90.00 NA 88.89 NA 100.00 100.00 100.00 91.30 K intron_retention CG33111,noncoding_18661,I_chr3R_19627964_19628107,I_chr3R_19633752_19633821 chr3R - chr3R_19627964_19632347 chr3R_19627963_19627964;chr3R_19632347_19632348 chr3R_19627864_19627963;chr3R_19632348_19632486 6.28 NA NA 17.14 NA NA 15.79 5.56 5.88 NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA 6.67 NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 15.38 NA 15.38 NA NA NA NA NA 0.00 NA K intron_retention CG18749,noncoding_15296,CG33722 chr3R + chr3R_4069864_4069918 chr3R_4069863_4069864;chr3R_4069918_4069919 chr3R_4069831_4069863;chr3R_4069919_4071416 0.00 0.00 0.00 10.00 6.25 5.56 0.00 0.00 2.67 0.00 0.00 3.77 0.00 0.00 0.00 6.90 3.12 0.00 0.00 3.28 0.00 25.00 5.56 6.67 10.71 0.00 5.66 20.00 45.16 0.00 0.00 NA NA 5.13 0.00 10.71 7.14 0.00 7.69 6.90 NA 3.12 0.00 0.00 0.00 0.00 4.65 NA 2.22 0.00 8.11 0.00 0.00 3.45 0.00 0.00 0.00 NA K cassette Msp-300,I_chr2L_5197634_5197866 chr2L + chr2L_5204593_5205103 chr2L_5204593_5204835;chr2L_5204904_5205103 chr2L_5204836_5204903 chr2L_5204463_5204592;chr2L_5205104_5205389 100.00 99.09 100.00 100.00 100.00 100.00 98.90 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.29 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention sd,noncoding_23930,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15706472_15707633 chrX_15706471_15706472;chrX_15707633_15707634 chrX_15706468_15706471;chrX_15707634_15707635 90.00 100.00 100.00 86.67 NA 92.31 80.95 95.24 82.14 92.86 75.00 93.75 100.00 87.50 100.00 73.08 91.67 88.89 92.86 84.09 92.31 95.65 82.35 78.57 NA 92.31 73.68 81.82 93.55 92.11 93.75 94.74 88.57 94.74 82.35 100.00 90.00 NA 73.33 87.10 94.44 88.89 76.92 72.73 90.00 87.50 NA 98.04 96.00 NA 77.78 90.91 NA NA 88.89 88.89 NA 92.86 K jcn_only_AA hts,I_chr2R_15311185_15312327,I_chr2R_15311303_15311544,I_chr2R_15311303_15312026 chr2R - chr2R_15306111_15312327 chr2R_15311303_15312327 chr2R_15312328_15312346 84.31 94.29 81.43 73.68 90.91 84.31 79.73 87.10 84.76 NA 81.13 91.03 82.69 81.25 72.00 70.15 82.46 78.26 75.86 97.52 83.33 96.55 93.62 93.10 NA 90.38 93.10 60.00 NA NA 77.97 NA 57.69 78.26 NA 91.30 87.18 82.61 90.62 80.60 NA 90.00 84.00 82.69 NA NA NA NA 75.56 84.62 92.16 88.57 NA NA 84.38 90.32 95.45 NA K alternative_donor CG1657,I_chrX_11222451_11222508 chrX + chrX_11222441_11222508 chrX_11222451_11222508 chrX_11222509_11222608;chrX_11222351_11222440 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.45 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 6.67 0.00 1.85 2.38 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.27 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K intron_retention CG15609,I_chr2R_12897700_12897767,C_chr2R_12899322_12900789,I_chr2R_12902708_12903184 chr2R - chr2R_12897679_12897767 chr2R_12897678_12897679;chr2R_12897767_12897768 chr2R_12897600_12897678;chr2R_12897768_12897834 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 1.55 0.00 1.49 0.00 1.85 1.75 3.41 4.48 0.00 2.90 0.00 2.45 0.00 0.00 0.72 0.00 1.45 3.23 0.98 0.00 0.00 2.41 2.44 2.99 1.96 2.04 0.00 3.61 0.00 0.00 0.00 0.91 1.33 2.16 0.00 2.08 0.00 0.00 0.00 1.01 0.82 0.00 0.84 0.00 0.00 0.00 1.23 0.00 0.00 0.00 K jcn_only_AD Eaf,RI_chr2R_3294566_3294636,I_chr2R_3294566_3294656,RI_chr2R_3294566_3294714,I_chr2R_3294566_3295255,I_chr2R_3294591_3295244 chr2R - chr2R_3294566_3295176;chr2R_3294566_3294634;chr2R_3294566_3294636;chr2R_3294566_3294638;chr2R_3294566_3295280;chr2R_3294566_3294642;chr2R_3294566_3294714 chr2R_3294566_3295244 chr2R_3294491_3294565;chr2R_3295281_3295302 40.45 41.67 37.50 76.92 NA 33.33 57.14 52.94 46.34 NA 48.48 44.44 20.00 52.38 41.03 55.17 42.86 35.00 42.31 53.73 43.33 8.00 37.50 48.39 43.75 33.33 30.43 41.94 28.12 37.50 31.43 50.00 33.33 47.50 NA NA 39.53 40.91 34.15 29.09 19.23 37.74 36.36 43.75 27.50 28.57 48.00 33.33 44.78 59.09 29.63 46.43 40.00 NA 56.67 37.50 21.74 39.29 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2816013;chr2R_2816342_2816577;chr2R_2816779_2817327;chr2R_2817604_2817753 chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817328_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Ugt36Bc chr2L + chr2L_16799134_16799680 chr2L_16799133_16799134;chr2L_16799680_16799681 chr2L_16799029_16799133;chr2L_16799681_16800520 0.00 NA NA NA NA NA 9.09 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 0.00 10.00 6.67 NA 0.00 7.14 14.29 NA 10.00 NA 0.00 NA NA 0.00 NA NA NA 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 0.00 NA NA NA NA 0.00 NA N jcn_only_AA capt,I_chr2L_1156009_1158078,I_chr2L_1163632_1163759 chr2L - chr2L_1153732_1158078 chr2L_1157987_1158078 chr2L_1158079_1158178;chr2L_1153632_1153731 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA vap,RI_chrX_15897976_15899352,I_chrX_15897976_15899654,I_chrX_15898011_15899654,I_chrX_15898427_15899017,RI_chrX_15898427_15899654,RI_chrX_15899237_15899352,I_chrX_15899237_15899654 chrX - chrX_15898427_15899654;chrX_15898011_15899654;chrX_15899510_15899654;chrX_15898478_15899654 chrX_15897976_15899654 chrX_15899655_15899705 2.50 NA NA NA NA NA 2.94 NA 11.11 NA NA 9.09 NA NA NA 5.88 NA NA NA 2.13 NA 2.94 11.11 NA 0.00 NA NA NA NA 0.00 3.45 NA NA 7.14 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA NA NA 2.86 NA NA 0.00 NA NA NA NA NA NA K intron_retention Tom40,I_chrX_7631717_7632414 chrX + chrX_7631717_7631905 chrX_7631716_7631717;chrX_7631905_7631906 chrX_7631617_7631716;chrX_7631906_7632168 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 K jcn_only_AD CG5694,RI_chr2L_10229956_10231366 chr2L - chr2L_10229956_10231538;chr2L_10229956_10231394 chr2L_10229956_10231282 chr2L_10229856_10229955;chr2L_10231539_10231648 56.45 NA NA 70.00 NA NA 61.29 42.86 56.45 NA NA 58.33 33.33 57.14 NA 61.82 NA 59.09 34.29 58.62 NA NA 46.15 42.86 NA NA NA NA NA NA 50.00 NA NA 58.14 NA NA NA NA NA 65.52 NA 46.88 NA NA NA NA NA 55.17 50.94 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG14290,RI_chr3R_14754008_14754110 chr3R - chr3R_14754008_14754110 chr3R_14754037_14754110 chr3R_14754111_14754179;chr3R_14753942_14754007 100.00 100.00 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 99.26 100.00 100.00 98.94 100.00 100.00 100.00 100.00 100.00 97.14 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.81 100.00 98.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.04 100.00 100.00 100.00 97.73 100.00 98.28 100.00 100.00 K intron_retention I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,cg,I_chr2R_10064197_10068715,I_chr2R_10068194_10068715 chr2R + chr2R_10061428_10061604 chr2R_10061427_10061428;chr2R_10061604_10061605 chr2R_10061376_10061427;chr2R_10061605_10061774 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.00 100.00 100.00 97.06 100.00 100.00 100.00 K intron_retention CG7091,RI_chr3R_8805541_8805680,I_chr3R_8809774_8809832 chr3R + chr3R_8805919_8805974 chr3R_8805918_8805919;chr3R_8805974_8805975 chr3R_8805677_8805918;chr3R_8805975_8806192 0.00 0.00 0.00 3.03 0.00 0.00 2.27 2.30 0.00 NA 0.00 1.23 0.00 3.77 0.00 2.90 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 N intron_retention Syb chr2R - chr2R_6137333_6138021 chr2R_6137332_6137333;chr2R_6138021_6138022 chr2R_6137005_6137332;chr2R_6138022_6138091 100.00 100.00 100.00 89.84 100.00 100.00 100.00 90.28 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD vig chr2L - chr2L_15067690_15067952;chr2L_15067690_15067995;chr2L_15067690_15067868;chr2L_15067690_15068029;chr2L_15067690_15067999 chr2L_15067690_15067915 chr2L_15066937_15067689;chr2L_15068030_15068031 92.47 87.50 94.94 94.27 94.03 87.27 95.29 89.47 92.47 89.00 95.86 90.38 92.42 90.37 93.71 93.50 94.55 93.27 95.93 92.25 94.70 89.31 94.96 86.42 96.30 95.04 95.00 84.02 86.36 87.50 94.37 87.30 86.60 95.90 94.29 92.21 84.62 88.41 92.75 83.15 83.78 94.10 94.74 89.01 87.91 87.30 92.11 82.12 94.46 95.56 94.06 83.53 95.19 94.12 95.48 92.75 90.80 84.28 K intron_retention trio,I_chr3L_999683_1009321 chr3L - chr3L_1026347_1026405 chr3L_1026346_1026347;chr3L_1026405_1026406 chr3L_1026262_1026346;chr3L_1026406_1026625 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD E_chr4_592469_594231,Ephrin,I_chr4_595055_597604,RI_chr4_596272_596341 chr4 + chr4_592737_594238;chr4_592646_594238;chr4_592490_594238;chr4_592593_594238;chr4_592469_594238;chr4_592410_594238 chr4_592798_594238 chr4_594239_594331;chr4_592404_592409 6.45 3.70 8.70 2.78 8.00 3.57 8.42 11.25 10.47 NA NA 7.59 4.76 7.89 5.88 4.65 6.25 NA 8.51 6.45 13.79 NA 3.70 NA 4.35 21.88 6.06 NA NA NA 3.23 NA NA 1.27 8.33 10.71 NA NA NA 0.00 NA 12.90 14.71 10.71 NA NA NA NA 4.82 NA 5.41 22.73 NA NA 3.03 NA NA NA K intron_retention glec,RI_chr3R_17677599_17677828 chr3R - chr3R_17677599_17681121 chr3R_17677598_17677599;chr3R_17681121_17681122 chr3R_17677499_17677598;chr3R_17681122_17681984 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 3.70 2.56 0.00 4.35 0.00 0.00 0.00 3.03 3.03 0.00 3.45 0.00 10.64 3.33 0.00 0.00 0.00 2.94 0.00 0.00 0.00 3.85 1.75 6.45 3.70 4.44 0.00 0.00 0.00 8.89 0.00 0.00 4.17 3.39 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Sop2,CG33649 chr2L - chr2L_13829644_13829709 chr2L_13829643_13829644;chr2L_13829709_13829710 chr2L_13829346_13829643;chr2L_13829710_13829727 90.68 94.74 92.17 82.94 90.68 92.93 93.43 89.45 92.69 95.12 88.98 91.57 84.31 90.00 89.21 88.74 87.30 85.00 88.03 88.79 92.56 95.76 90.24 94.87 98.18 89.39 91.25 95.65 92.54 89.55 89.55 81.13 75.81 89.30 92.59 95.00 92.50 92.11 92.93 94.74 77.50 86.82 92.11 91.94 79.37 86.67 91.26 75.81 86.19 93.06 91.03 88.31 93.33 96.43 91.54 88.30 89.38 64.52 K jcn_only_AD Pegarn chr3L + chr3L_12783425_12784534;chr3L_12783483_12784534 chr3L_12783350_12784534 chr3L_12784535_12784733;chr3L_12783320_12783349 21.71 NA NA NA NA NA NA NA 18.42 NA NA NA NA NA NA 13.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 31.82 NA NA NA NA NA 33.33 9.52 NA NA NA NA NA NA NA NA 25.00 K alternative_donor I_chrX_20906749_20909772,Mgstl,noncoding_25026 chrX + chrX_20913675_20914706 chrX_20914329_20914706 chrX_20914707_20914747;chrX_20913482_20913674 100.00 100.00 98.73 99.21 98.48 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.44 98.92 100.00 100.00 98.89 100.00 98.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.63 99.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.33 98.68 99.01 98.99 100.00 98.63 100.00 99.22 100.00 100.00 98.04 100.00 98.80 100.00 100.00 98.48 98.77 K jcn_only_AD CG9526,I_chr2L_6457114_6457365,I_chr2L_6457278_6457337 chr2L + chr2L_6457114_6457337 chr2L_6457278_6457337 chr2L_6457338_6457437;chr2L_6457014_6457113 1.66 1.69 1.59 1.63 0.00 0.00 1.28 1.05 0.00 5.26 4.08 2.06 2.00 0.00 1.33 0.00 0.00 1.85 0.00 0.00 2.63 12.12 3.23 4.55 2.04 0.00 1.33 1.85 2.78 1.56 8.14 1.32 0.00 0.00 3.77 1.54 1.25 2.00 0.00 2.61 3.61 1.05 2.78 3.64 0.00 0.00 2.38 1.69 2.08 6.67 0.00 1.92 NA 2.00 1.22 1.75 5.45 0.00 K cassette CG8176,I_chr3R_5348614_5348964 chr3R + chr3R_5348614_5349923 chr3R_5348614_5349257;chr3R_5349519_5349923 chr3R_5349258_5349518 chr3R_5348514_5348613;chr3R_5349924_5350029 33.33 32.08 35.71 35.16 22.37 31.33 24.71 22.04 25.52 45.95 32.99 21.76 23.68 29.09 28.46 37.29 29.17 37.89 25.19 34.06 27.68 55.21 38.89 45.74 30.30 30.30 37.72 55.56 34.85 33.33 30.53 40.32 54.76 26.03 36.47 27.18 46.43 40.51 37.00 41.18 29.41 27.05 26.67 32.32 56.14 36.49 39.44 42.42 27.31 29.33 34.04 40.51 35.29 33.33 28.28 30.49 32.65 40.00 K alternative_acceptor l(2)k05819,I_chr2L_4396173_4396266 chr2L + chr2L_4396173_4396809 chr2L_4396173_4396266 chr2L_4396143_4396172;chr2L_4396810_4396906 6.98 7.32 4.44 4.40 1.92 5.00 5.32 10.29 5.88 9.09 0.00 20.63 37.50 5.77 6.00 3.85 4.65 6.00 4.92 6.09 4.17 35.00 9.26 7.84 5.71 2.67 5.36 1.82 5.41 21.43 9.52 3.57 12.20 3.80 11.54 23.08 4.60 10.71 8.77 9.09 7.69 6.38 2.22 8.00 5.56 8.70 6.90 23.08 6.98 10.71 9.52 7.89 8.33 8.33 6.15 13.33 8.33 41.67 K intron_retention nimC1,I_chr2L_13975880_13975977 chr2L - chr2L_13975880_13976476 chr2L_13975879_13975880;chr2L_13976476_13976477 chr2L_13975780_13975879;chr2L_13976477_13976753 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 1.23 NA 0.00 5.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 NA NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA 10.00 NA NA NA NA 0.00 0.00 NA NA NA NA NA 6.35 NA NA 10.53 NA NA 1.96 NA NA NA K intron_retention mys,I_chrX_7958795_7961094 chrX + chrX_7958795_7959480 chrX_7958794_7958795;chrX_7959480_7959481 chrX_7958695_7958794;chrX_7959481_7959565 5.26 6.49 7.61 5.49 12.63 6.62 12.06 5.43 6.99 3.45 6.98 4.99 20.00 5.71 6.09 5.40 9.35 4.41 6.88 7.29 5.84 1.53 3.08 1.42 3.28 9.47 3.00 18.92 2.61 7.55 5.83 4.29 0.88 4.96 2.27 5.04 3.92 2.58 3.92 6.62 0.00 5.21 7.25 2.91 5.26 2.88 1.94 6.58 6.15 6.32 3.61 5.26 2.11 1.83 6.82 3.50 0.68 3.12 K intron_retention CG9836,I_chr3R_4654041_4664113,I_chr3R_4749124_4756437 chr3R - chr3R_4649024_4649074 chr3R_4649023_4649024;chr3R_4649074_4649075 chr3R_4648990_4649023;chr3R_4649075_4649523 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.80 100.00 K intron_retention CG17689 chr3L + chr3L_13501646_13502149 chr3L_13501645_13501646;chr3L_13502149_13502150 chr3L_13500035_13501645;chr3L_13502150_13502434 8.33 10.53 10.53 16.00 NA 10.00 0.00 9.09 9.76 3.70 NA 5.56 33.33 14.29 3.85 14.29 NA NA 0.00 9.52 0.00 19.67 9.30 9.68 10.34 8.33 7.41 8.33 12.77 2.50 0.00 3.33 3.28 18.52 14.29 13.79 6.25 10.81 6.15 8.00 11.76 16.67 NA 10.81 1.92 10.87 3.85 8.33 10.26 8.00 10.81 4.76 0.00 6.67 0.00 6.06 4.35 5.26 K intron_retention Synd chr3R + chr3R_16664346_16664400 chr3R_16664345_16664346;chr3R_16664400_16664401 chr3R_16664235_16664345;chr3R_16664401_16664609 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Ras64B,I_chr3L_4139414_4139906,RI_chr3L_4139526_4139906,I_chr3L_4139773_4139906 chr3L + chr3L_4139260_4139906 chr3L_4139259_4139260;chr3L_4139906_4139907 chr3L_4139041_4139259;chr3L_4139907_4139994 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585739_2586265;chr3L_2585739_2586402;chr3L_2585739_2586413 chr3L_2585739_2586036 chr3L_2585639_2585738;chr3L_2586414_2586502 12.24 12.50 10.23 9.73 8.33 10.26 19.49 8.03 11.84 17.24 11.11 9.62 10.29 8.70 10.10 11.04 12.28 12.00 12.22 8.48 11.86 17.05 12.77 15.52 15.15 11.36 16.67 18.18 22.68 12.50 8.04 9.68 15.48 11.19 15.07 12.99 15.00 12.70 10.91 13.97 18.46 9.55 11.94 18.09 7.14 9.86 13.51 13.82 9.14 12.50 13.27 12.96 14.71 11.54 8.18 12.24 16.67 12.70 K intron_retention unc-5,E_chr2R_11238100_11240757,I_chr2R_11252444_11252570 chr2R + chr2R_11246255_11247919 chr2R_11246254_11246255;chr2R_11247919_11247920 chr2R_11246084_11246254;chr2R_11247920_11247973 0.00 0.00 0.00 3.57 0.00 NA 0.00 0.00 0.00 0.00 0.00 4.35 NA NA 0.00 NA NA NA 0.00 0.00 0.00 0.00 1.96 0.00 0.00 NA 0.00 9.09 0.00 0.00 0.00 NA 6.67 0.00 0.00 0.00 6.45 0.00 0.00 6.67 NA 4.65 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.35 NA NA 0.00 K intron_retention I_chr2R_2700203_2700285,koi chr2R + chr2R_2704065_2704121 chr2R_2704064_2704065;chr2R_2704121_2704122 chr2R_2702565_2704064;chr2R_2704122_2704219 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.17 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 3.03 0.00 6.67 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD Rip11,RI_chrX_18530353_18530870,RI_chrX_18544139_18544185 chrX - chrX_18534444_18541222 chrX_18534444_18534510 chrX_18534299_18534443;chrX_18541223_18541623 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG15011 chr3L - chr3L_4257716_4257771 chr3L_4257715_4257716;chr3L_4257771_4257772 chr3L_4257584_4257715;chr3L_4257772_4257888 10.67 14.29 13.64 10.81 NA 11.76 11.54 7.41 11.63 NA NA 13.79 13.33 5.56 0.00 21.43 6.67 11.54 0.00 15.56 0.00 0.00 12.00 13.04 NA 0.00 8.33 NA NA 0.00 8.70 0.00 0.00 3.03 NA 0.00 9.52 12.50 0.00 12.50 NA 12.12 NA NA 11.76 7.41 7.41 NA 12.12 5.26 0.00 11.11 0.00 17.65 18.75 18.18 25.00 10.53 K intron_retention Hlc,snoRNA:MeU6-A47 chrX - chrX_21257806_21258000 chrX_21257805_21257806;chrX_21258000_21258001 chrX_21257377_21257805;chrX_21258001_21258752 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 K alternative_acceptor Plip chr3R + chr3R_19584641_19584711 chr3R_19584641_19584699 chr3R_19584572_19584640;chr3R_19584712_19584774 100.00 100.00 100.00 90.91 94.74 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Sec61alpha chr2L - chr2L_6477898_6477970 chr2L_6477897_6477898;chr2L_6477970_6477971 chr2L_6477129_6477897;chr2L_6477971_6479062 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Ent1 chr2L - chr2L_357749_357815 chr2L_357748_357749;chr2L_357815_357816 chr2L_357423_357748;chr2L_357816_357903 95.83 94.44 100.00 97.56 95.00 89.47 94.44 97.67 92.45 NA 94.44 95.92 95.65 88.46 95.45 95.83 94.74 95.24 95.65 98.25 94.44 100.00 100.00 91.67 100.00 85.71 93.75 100.00 100.00 93.33 95.83 100.00 94.44 97.50 100.00 NA 95.65 88.89 89.47 96.30 100.00 97.83 95.24 100.00 91.67 100.00 100.00 100.00 96.00 100.00 100.00 94.12 100.00 100.00 96.67 100.00 94.74 93.33 K jcn_only_AD Mpcp chr3L + chr3L_14530949_14531103;chr3L_14530935_14531103 chr3L_14530803_14531103 chr3L_14531104_14531521;chr3L_14530797_14530802 98.07 97.89 97.73 96.93 98.86 98.64 98.03 95.80 99.00 99.79 99.04 97.45 98.95 96.98 98.53 95.47 99.69 98.09 97.81 98.15 98.50 98.99 97.18 98.33 98.26 97.70 96.56 98.35 96.75 96.04 97.92 96.27 97.67 97.02 95.15 93.05 99.50 98.41 98.95 98.40 94.07 98.86 97.61 98.07 98.55 99.55 97.77 98.60 98.59 98.35 96.05 98.24 98.72 95.26 97.70 98.78 97.97 97.31 K intron_retention CG7112 chr3L + chr3L_8341540_8341601 chr3L_8341539_8341540;chr3L_8341601_8341602 chr3L_8341356_8341539;chr3L_8341602_8341789 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K intron_retention Pfk,I_chr2R_5999081_6000140,E_chr2R_6001157_6001630 chr2R + chr2R_6000676_6001630 chr2R_6000675_6000676;chr2R_6001630_6001631 chr2R_6000521_6000675;chr2R_6001631_6001730 12.50 13.79 17.65 21.05 20.00 15.79 26.67 12.50 18.92 4.55 NA 19.35 NA NA 30.77 7.14 NA NA NA 4.29 NA 15.38 7.55 12.00 10.00 NA 17.50 28.57 25.00 3.45 30.00 NA 10.00 9.52 15.38 NA 6.15 12.50 10.87 28.12 NA 9.38 NA 6.67 0.00 8.33 2.70 20.00 16.00 0.00 10.87 19.23 NA 0.00 21.43 0.00 0.00 NA K alternative_donor CG33655,I_chr2R_17207309_17207365 chr2R - chr2R_17207309_17207369 chr2R_17207309_17207365 chr2R_17207209_17207308;chr2R_17207370_17207465 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA 6.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Hip1 chr3L - chr3L_12763439_12763494 chr3L_12763438_12763439;chr3L_12763494_12763495 chr3L_12763009_12763438;chr3L_12763495_12764241 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 2.78 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 1.04 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention Nup75,I_chr2R_14058825_14059758,I_chr2R_14058954_14059942 chr2R - chr2R_14052608_14052664 chr2R_14052607_14052608;chr2R_14052664_14052665 chr2R_14052460_14052607;chr2R_14052665_14052855 0.00 0.00 0.00 3.33 0.00 0.00 0.00 1.39 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention shep,RI_chr3L_5163541_5194164,I_chr3L_5177084_5177314,I_chr3L_5193467_5212049 chr3L - chr3L_5155711_5156456 chr3L_5155710_5155711;chr3L_5156456_5156457 chr3L_5155556_5155710;chr3L_5156457_5156803 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 75.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 22.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 100.00 K intron_retention Indy chr3L - chr3L_18825085_18833472 chr3L_18825084_18825085;chr3L_18833472_18833473 chr3L_18825047_18825084;chr3L_18833473_18833593 21.05 19.05 13.95 16.39 12.90 21.62 33.33 27.40 16.47 NA 14.71 24.62 21.05 24.00 22.22 25.37 16.67 24.24 21.62 26.44 13.79 2.70 13.51 22.22 21.43 19.35 30.77 26.67 30.77 17.65 28.95 NA 26.32 28.81 35.29 36.84 0.00 NA 12.00 12.50 NA 18.67 15.79 5.56 0.00 9.52 0.00 33.33 26.88 NA 25.00 23.08 11.11 NA 21.95 14.29 4.35 8.70 K alternative_acceptor I_chr3L_207277_208117,pyx chr3L - chr3L_221504_221588 chr3L_221525_221588 chr3L_221589_221782;chr3L_221286_221503 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N cassette Myo31DF,I_chr2L_10506249_10506683,I_chr2L_10506446_10506542 chr2L - chr2L_10496849_10505925 chr2L_10496849_10497852;chr2L_10498156_10505925 chr2L_10497853_10498155 chr2L_10496629_10496848;chr2L_10505926_10506106 100.00 100.00 100.00 95.29 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.20 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention I_chr3L_20306985_20307177,CG6680 chr3L + chr3L_20310517_20310578 chr3L_20310516_20310517;chr3L_20310578_20310579 chr3L_20310328_20310516;chr3L_20310579_20310888 31.43 37.14 36.84 42.42 50.00 36.00 27.59 41.18 34.25 30.77 28.57 29.23 13.64 26.83 42.86 28.57 59.26 47.37 38.89 37.93 36.84 20.00 34.15 20.00 47.06 56.25 50.00 NA 50.00 22.58 26.92 15.38 30.00 44.68 36.00 42.11 28.95 24.00 30.77 26.00 29.17 50.00 54.17 37.14 28.57 23.21 11.76 33.33 30.56 31.82 25.00 25.93 40.43 27.78 44.44 31.03 15.85 14.61 K intron_retention l(2)03709,I_chr2R_14707617_14707700,I_chr2R_14708048_14708095 chr2R + chr2R_14708789_14708997 chr2R_14708788_14708789;chr2R_14708997_14708998 chr2R_14708689_14708788;chr2R_14708998_14709059 98.45 100.00 98.72 99.40 100.00 95.08 99.55 98.74 99.26 100.00 100.00 98.45 97.96 98.65 100.00 97.03 100.00 100.00 98.90 99.25 98.11 96.88 97.48 97.39 98.80 97.80 97.39 98.28 98.72 95.52 97.70 100.00 100.00 100.00 98.68 93.83 95.59 97.44 95.89 98.47 98.53 99.19 100.00 96.00 86.54 97.85 97.53 97.67 98.33 98.08 98.33 97.06 98.48 96.34 97.18 98.94 97.62 100.00 K intron_retention TfIIA-L chr3R + chr3R_23081386_23081447 chr3R_23081385_23081386;chr3R_23081447_23081448 chr3R_23081178_23081385;chr3R_23081448_23081692 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD mge,RI_chr3L_3908532_3908778 chr3L - chr3L_3908532_3909003 chr3L_3908532_3908778 chr3L_3908432_3908531;chr3L_3909004_3909039 0.00 0.00 0.00 0.00 2.94 NA 4.76 2.38 0.00 0.00 17.24 0.00 5.00 0.00 2.70 NA 0.00 2.86 0.00 2.17 3.33 2.00 1.69 0.00 0.00 0.00 1.37 0.00 3.45 0.00 2.70 3.33 0.00 2.27 0.00 0.00 1.43 0.00 0.00 0.00 0.00 2.70 9.52 0.00 0.00 0.00 1.56 0.00 1.69 0.00 2.17 0.00 0.00 2.00 2.27 1.85 4.71 1.85 K alternative_donor CG1657 chrX + chrX_11219544_11222056;chrX_11219604_11222056 chrX_11219635_11222056 chrX_11222057_11222225;chrX_11219475_11219543 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 K intron_retention I_chr3R_23771063_23772599,CG4951,RI_chr3R_23778808_23778861 chr3R - chr3R_23778405_23778478 chr3R_23778404_23778405;chr3R_23778478_23778479 chr3R_23778197_23778404;chr3R_23778479_23778646 33.33 17.86 31.25 53.85 17.65 40.91 47.83 31.58 18.60 26.67 26.32 37.84 35.00 41.18 27.59 15.62 40.00 20.00 39.13 40.43 30.00 27.78 28.57 31.43 37.50 50.00 17.39 NA 29.17 30.00 65.00 33.33 42.86 39.39 25.00 43.75 28.57 15.38 28.57 36.67 53.85 45.10 40.00 33.33 47.37 51.11 34.48 37.50 41.67 20.00 23.08 32.14 33.33 22.73 25.93 32.26 40.62 45.10 K intron_retention Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19546876_19547916 chr2R_19546875_19546876;chr2R_19547916_19547917 chr2R_19546867_19546875;chr2R_19547917_19547942 100.00 93.75 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 96.43 100.00 100.00 100.00 96.43 NA 100.00 100.00 100.00 NA 100.00 96.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 96.55 100.00 100.00 NA 100.00 100.00 100.00 95.24 NA 100.00 100.00 NA 100.00 100.00 90.00 100.00 90.00 K alternative_donor CG2789 chr2L + chr2L_560306_560369 chr2L_560311_560369 chr2L_560370_560522;chr2L_560097_560305 95.28 95.12 94.06 97.71 96.72 94.12 99.42 96.75 96.43 93.24 94.37 97.39 90.16 98.63 96.81 96.49 94.74 89.53 93.41 91.67 92.78 95.24 96.82 95.00 97.94 95.45 98.41 93.91 99.15 94.52 91.15 98.32 98.23 96.60 95.35 98.82 92.52 98.08 97.33 93.85 97.97 96.13 93.85 91.47 91.49 95.28 96.36 94.30 93.06 97.08 91.30 91.59 89.87 96.26 97.09 94.63 96.39 91.61 K intron_retention E(bx),I_chr3L_240127_240176,I_chr3L_246324_246699 chr3L - chr3L_240117_240176 chr3L_240116_240117;chr3L_240176_240177 chr3L_240027_240116;chr3L_240177_240276 59.29 52.63 55.29 59.80 59.32 56.14 35.87 50.75 60.14 46.67 57.63 53.33 57.35 65.75 63.95 65.14 50.00 48.75 60.49 57.92 55.38 51.09 65.85 60.29 69.84 76.39 77.08 73.58 60.75 66.30 52.69 68.66 72.32 62.50 62.16 58.16 59.38 60.47 51.90 45.34 67.09 59.29 59.02 60.26 54.79 48.60 46.55 53.15 60.49 62.07 55.34 55.32 53.70 50.00 61.54 56.90 63.04 63.01 K intron_retention MRG15,l(3)neo43,F_chr3R_11104164_11104239 chr3R - chr3R_11103623_11103682 chr3R_11103622_11103623;chr3R_11103682_11103683 chr3R_11103508_11103622;chr3R_11103683_11103879 0.00 0.00 4.44 1.72 0.00 0.00 0.00 2.13 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 NA 0.00 0.00 2.63 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3R_22696095_22697413,Rb97D chr3R - chr3R_22699721_22699788 chr3R_22699720_22699721;chr3R_22699788_22699789 chr3R_22699582_22699720;chr3R_22699789_22700512 10.76 7.69 0.00 18.52 NA 14.29 13.64 12.50 9.30 8.70 NA 11.76 21.05 NA 7.41 20.00 NA 12.50 9.52 15.56 0.00 0.00 13.33 19.23 10.00 NA 18.52 12.50 11.11 0.00 NA NA 8.00 19.05 NA 0.00 9.43 5.00 12.20 10.81 NA 10.53 NA 6.45 10.71 8.70 13.04 NA 20.83 6.06 9.09 9.52 11.76 6.06 22.22 3.85 13.33 14.29 K alternative_donor eIF5,noncoding_24049,EI_chrX_15885411_15885854,RI_chrX_15885416_15885611 chrX - chrX_15885416_15885925;chrX_15885416_15885854;chrX_15885416_15885783 chrX_15885416_15885611 chrX_15885316_15885415;chrX_15885926_15885954 0.00 0.00 0.00 3.57 NA 0.00 0.00 0.00 3.03 NA 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA NA NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 4.55 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 K jcn_only_AA CG15032,I_chrX_15200613_15200682 chrX + chrX_15200613_15204410 chrX_15200613_15200682 chrX_15200513_15200612;chrX_15204411_15205252 0.00 0.00 0.00 1.23 0.00 0.00 1.69 1.37 0.00 0.00 3.85 1.75 0.00 0.00 2.33 0.00 0.00 4.00 0.00 0.00 0.00 0.00 2.50 NA 0.00 0.00 5.56 5.88 1.59 3.39 0.00 0.00 0.00 3.23 0.00 2.38 0.00 0.00 1.89 1.05 0.00 2.63 0.00 0.00 4.17 1.92 NA 0.00 1.37 NA 3.33 0.00 0.00 NA 0.00 NA 0.00 0.00 K intron_retention eIF-4E,RI_chr3L_9394054_9394756,I_chr3L_9394308_9394756,RI_chr3L_9394468_9394631,I_chr3L_9394468_9394659,I_chr3L_9394468_9395155,I_chr3L_9394468_9395240,I_chr3L_9394468_9395446,I_chr3L_9394685_9394756,RI_chr3L_9394707_9395016,RI_chr3L_9394707_9395198,I_chr3L_9394707_9395309,I_chr3L_9394819_9394884,I_chr3L_9394819_9395016,I_chr3L_9394819_9395198,I_chr3L_9394819_9395379 chr3L - chr3L_9394468_9395198 chr3L_9394467_9394468;chr3L_9395198_9395199 chr3L_9394368_9394467;chr3L_9395199_9395223 96.15 100.00 95.65 88.64 93.75 92.31 97.92 92.11 93.85 93.33 100.00 98.08 93.75 100.00 100.00 100.00 95.00 100.00 100.00 94.87 100.00 100.00 94.12 100.00 100.00 93.75 100.00 94.74 95.00 95.65 94.44 87.50 100.00 96.97 95.00 100.00 100.00 100.00 100.00 96.97 84.62 97.14 92.86 95.65 92.86 96.15 95.24 82.61 97.92 95.45 92.31 95.24 100.00 100.00 100.00 100.00 100.00 92.59 K intron_retention dnc,I_chrX_3150245_3150319,I_chrX_3150351_3152643 chrX + chrX_3150245_3152646 chrX_3150244_3150245;chrX_3152646_3152647 chrX_3150235_3150244;chrX_3152647_3152733 62.50 NA NA 63.64 NA NA NA 58.33 NA NA NA NA NA NA NA 62.50 NA NA NA 47.62 NA NA NA NA NA NA NA NA NA NA 72.73 NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 58.82 NA NA NA NA NA NA NA NA NA K cassette Nipsnap,RI_chrX_15965934_15967435 chrX - chrX_15965934_15967435 chrX_15965934_15967059;chrX_15967175_15967435 chrX_15967060_15967174 chrX_15965834_15965933;chrX_15967436_15967464 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 97.83 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Nmda1,R_chr2R_8766216_8766562,I_chr2R_8766652_8766956,I_chr2R_8766728_8766791,I_chr2R_8766728_8767623 chr2R - chr2R_8766728_8767193 chr2R_8766727_8766728;chr2R_8767193_8767194 chr2R_8766713_8766727;chr2R_8767194_8767290 0.00 0.00 0.00 1.26 0.00 4.17 1.69 1.46 1.72 0.00 1.06 0.00 0.00 1.52 3.28 0.00 2.17 3.45 1.19 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 1.85 0.00 0.00 0.00 0.00 1.61 2.78 0.00 0.00 0.00 0.00 0.00 0.00 2.74 1.72 0.00 0.00 0.00 0.00 NA 1.71 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 NA K intron_retention rho-7,noncoding_6143 chr2R - chr2R_7876069_7876127 chr2R_7876068_7876069;chr2R_7876127_7876128 chr2R_7876008_7876068;chr2R_7876128_7876254 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 21.43 5.00 0.00 10.53 0.00 16.67 12.24 17.65 0.00 2.27 0.00 0.00 0.00 3.33 16.67 0.00 0.00 0.00 0.00 0.00 2.13 NA 0.00 0.00 4.17 0.00 4.35 0.00 2.70 1.64 0.00 0.00 0.00 0.00 0.00 0.00 4.44 K intron_retention PhKgamma,I_chrX_11590183_11590435,I_chrX_11596563_11597322 chrX + chrX_11592631_11594653 chrX_11592630_11592631;chrX_11594653_11594654 chrX_11592533_11592630;chrX_11594654_11595012 12.13 0.00 NA NA NA NA 11.11 15.38 12.50 NA NA 10.53 NA NA NA NA NA NA NA 13.04 NA 46.15 13.64 11.11 33.33 NA 25.00 NA NA 21.43 NA NA 38.46 NA 7.69 NA 0.00 NA NA 19.05 NA NA NA 11.76 NA 0.00 0.00 30.77 6.67 0.00 13.33 NA NA NA NA NA 0.00 NA K intron_retention CG13568,I_chr2R_19941242_19941302 chr2R - chr2R_19940843_19940896 chr2R_19940842_19940843;chr2R_19940896_19940897 chr2R_19940721_19940842;chr2R_19940897_19940934 34.84 NA NA NA NA NA NA 54.55 36.36 NA NA NA NA NA NA NA NA NA NA 31.58 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG16940,I_chr3L_212740_212843,I_chr3L_212783_212843,noncoding_9585,Kaz1-ORFA_Kaz1-ORFB chr3L + chr3L_212785_212843;chr3L_212308_212843 chr3L_212788_212843 chr3L_212844_212943;chr3L_212275_212307 0.00 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA G-salpha60A chr2R + chr2R_19833785_19833969 chr2R_19833785_19833960 chr2R_19833660_19833784;chr2R_19833970_19834043 23.46 24.68 22.22 21.59 24.64 19.18 15.46 21.86 26.17 23.40 23.53 17.54 18.75 21.95 25.49 21.38 22.73 30.00 23.20 17.04 30.49 16.92 28.57 30.26 21.88 30.00 30.67 31.67 16.00 26.51 12.82 22.14 26.28 25.40 28.57 29.49 34.21 26.83 16.95 19.33 22.61 18.99 25.64 25.00 20.49 27.41 21.37 16.96 22.56 23.64 33.33 34.85 25.45 35.14 20.49 23.46 36.84 16.08 K alternative_donor F_chrX_15764251_15765393,CG16952,RI_chrX_15764587_15765393,I_chrX_15766003_15766047 chrX + chrX_15764522_15765393;chrX_15764247_15765393;chrX_15764620_15765393;chrX_15764599_15765393 chrX_15764432_15765393 chrX_15765394_15765493;chrX_15764236_15764246 31.52 40.00 50.00 28.00 28.57 40.00 32.14 25.71 34.21 0.00 50.00 32.00 12.50 44.44 14.29 27.03 20.00 41.67 15.79 20.00 50.00 0.00 33.33 66.67 42.86 30.00 41.67 NA 20.00 20.00 44.44 0.00 22.22 25.00 36.36 37.50 25.00 0.00 33.33 40.00 16.67 31.03 53.33 20.00 33.33 33.33 50.00 23.08 43.59 25.00 46.15 14.29 NA 80.00 28.57 NA 50.00 12.50 K alternative_donor mub,RI_chr3L_21901021_21901163,I_chr3L_21908756_21909179 chr3L + chr3L_21873042_21881733 chr3L_21873109_21881733 chr3L_21881734_21881792;chr3L_21872950_21873041 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Traf-like,I_chrX_16309163_16309641,I_chrX_16309212_16309689,I_chrX_16309561_16309641,I_chrX_16309561_16309689,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16309561_16309689 chrX_16309560_16309561;chrX_16309689_16309690 chrX_16309461_16309560;chrX_16309690_16309741 95.45 96.43 97.22 96.77 96.43 95.45 96.08 95.52 95.18 91.67 93.33 98.18 93.55 96.88 96.88 100.00 97.44 97.44 97.30 89.66 93.33 97.44 89.47 97.44 95.65 92.59 96.97 93.75 100.00 94.74 83.33 94.12 95.83 98.15 85.19 77.27 90.24 96.55 97.50 91.43 85.71 91.89 96.67 100.00 100.00 95.45 91.67 93.33 94.64 96.30 92.68 95.24 94.74 95.45 97.14 92.59 97.44 93.75 K alternative_donor twin,RI_chr3R_20032242_20045321 chr3R - chr3R_20046286_20047514;chr3R_20046286_20047526 chr3R_20046286_20047530 chr3R_20046254_20046285;chr3R_20047531_20047647 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA 9.09 NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 K jcn_only_AD RpL35,I_chrX_5566913_5567030,I_chrX_5567168_5567220 chrX + chrX_5566913_5567030;chrX_5566556_5567030 chrX_5566909_5567030 chrX_5567031_5567130;chrX_5566554_5566555 93.89 96.19 94.01 93.47 89.93 92.68 94.16 93.38 91.32 92.10 90.81 93.28 92.85 94.32 92.19 96.48 91.22 93.89 94.56 94.69 92.73 95.14 96.43 94.89 94.41 93.69 97.59 91.10 96.36 92.56 96.24 92.46 81.99 94.61 94.27 97.10 90.05 93.32 91.06 76.57 96.02 91.25 94.19 88.40 91.87 96.93 96.12 94.59 94.15 96.35 98.02 91.09 89.07 98.14 93.43 96.37 96.04 92.08 K alternative_acceptor CG31122 chr3R - chr3R_14233936_14233996 chr3R_14233939_14233996 chr3R_14233997_14234162;chr3R_14233613_14233935 13.04 16.92 9.09 14.71 10.00 12.77 14.04 10.00 8.63 17.50 17.39 13.64 11.11 7.27 9.68 14.81 22.22 8.47 11.36 10.29 13.33 11.81 15.79 21.88 12.96 8.16 15.12 19.18 9.76 11.00 15.69 15.22 13.04 11.86 15.62 13.04 16.36 12.99 15.13 15.38 15.09 8.33 11.63 13.33 18.18 9.72 11.39 15.38 9.78 17.24 9.48 15.87 10.87 14.49 12.28 10.87 13.21 15.62 K intron_retention CG31523,I_chr3R_294322_304799,RI_chr3R_298911_304354 chr3R - chr3R_292566_293015 chr3R_292565_292566;chr3R_293015_293016 chr3R_291179_292565;chr3R_293016_293294 0.77 1.16 0.54 0.93 0.29 0.43 2.30 0.61 0.88 0.00 0.00 0.79 0.74 0.54 0.39 0.37 0.00 2.18 0.85 0.73 0.28 1.91 1.23 1.14 2.39 1.60 1.88 2.48 3.09 0.75 0.77 0.32 1.18 0.83 0.56 1.53 0.69 0.50 0.31 0.77 3.14 0.56 0.28 1.38 0.45 0.95 1.08 0.41 1.05 1.04 0.83 2.19 0.37 0.53 0.78 0.51 0.56 0.30 K intron_retention DmL37a,I_chr2L_5071155_5071224 chr2L + chr2L_5071158_5071226 chr2L_5071157_5071158;chr2L_5071226_5071227 chr2L_5071103_5071157;chr2L_5071227_5071324 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 N cassette dpr3 chr2L - chr2L_2059984_2065610 chr2L_2059984_2061974;chr2L_2062300_2065610 chr2L_2061975_2062299 chr2L_2058819_2059983;chr2L_2065611_2065743 100.00 100.00 100.00 87.61 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K multi_cassette drpr,I_chr3L_1718097_1718705,I_chr3L_1718154_1723579,I_chr3L_1720385_1723579,CG18171 chr3L - chr3L_1718097_1723579 chr3L_1718097_1718705;chr3L_1719746_1719922;chr3L_1720170_1723579 chr3L_1718706_1719745;chr3L_1719923_1720169 chr3L_1718054_1718096;chr3L_1723580_1723679 85.71 85.71 75.00 41.67 79.17 90.48 88.00 77.78 82.61 91.67 81.25 85.19 86.36 94.74 95.65 77.78 94.12 94.74 76.00 91.49 93.33 82.86 75.86 90.00 80.00 74.07 87.50 90.91 76.47 80.95 85.71 85.71 90.00 81.82 92.86 83.33 86.67 84.21 92.00 80.56 91.67 87.23 83.33 93.75 73.68 93.75 84.21 73.08 75.00 89.47 81.82 90.91 70.59 100.00 89.29 92.86 80.95 72.22 K cassette M(2)21AB,I_chr2L_110878_111037,I_chr2L_112022_112689,RI_chr2L_132256_132482 chr2L + chr2L_110878_112689;chr2L_110878_111906 chr2L_110878_111004;chr2L_111118_112689,chr2L_111118_111906 chr2L_111005_111117 chr2L_110778_110877;chr2L_112690_112789 3.25 3.64 3.03 2.16 1.43 3.23 7.32 3.46 3.74 2.45 1.40 3.11 3.42 2.05 4.76 4.88 3.82 8.28 2.54 3.20 1.59 16.31 3.17 3.51 3.17 3.31 4.01 7.25 6.19 4.14 3.64 2.82 3.64 3.82 4.82 6.59 3.14 3.79 3.01 2.25 3.11 3.71 3.17 2.76 7.88 3.28 2.99 2.20 2.08 3.25 4.32 3.07 2.76 3.50 1.81 3.12 2.82 3.27 K intron_retention hrg chr2R - chr2R_15553736_15553799 chr2R_15553735_15553736;chr2R_15553799_15553800 chr2R_15553030_15553735;chr2R_15553800_15554072 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 2.56 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive I_chr3L_1494947_1496080,pUf68,I_chr3L_1499710_1499771,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1499338_1499771,chr3L_1499880_1501798;chr3L_1499338_1500244,chr3L_1500389_1501798 chr3L_1499338_1501345,chr3L_1501407_1501798 chr3L_1499772_1499879;chr3L_1500245_1500388 chr3L_1501346_1501406 chr3L_1499043_1499337;chr3L_1501799_1501892 20.00 NA 20.00 0.00 NA NA NA 8.33 28.57 0.00 60.00 7.69 NA NA 25.00 16.67 NA NA 12.50 33.33 NA 0.00 30.00 20.00 37.50 0.00 14.29 16.67 NA NA 21.74 NA 40.00 10.00 42.86 11.11 NA 20.00 NA 40.00 33.33 23.08 NA 25.00 0.00 40.00 NA 50.00 27.27 14.29 25.00 20.00 NA 20.00 25.00 33.33 0.00 20.00 K cassette kst,I_chr3L_3365752_3365816,I_chr3L_3367008_3367514 chr3L + chr3L_3366311_3367514 chr3L_3366311_3366443;chr3L_3367011_3367514 chr3L_3366444_3367010 chr3L_3366200_3366310;chr3L_3367515_3367614 67.04 67.08 67.85 94.81 66.20 68.80 49.17 54.42 63.65 69.31 48.12 68.10 38.70 57.85 57.22 94.61 55.23 50.71 58.15 57.23 60.51 83.41 74.82 69.32 72.80 55.91 67.64 79.39 78.27 86.81 61.40 72.23 72.78 58.07 67.04 70.00 75.25 74.34 69.47 64.41 65.39 61.24 56.25 64.63 67.50 69.68 64.32 69.88 53.82 70.46 65.89 75.00 67.01 66.88 51.78 67.58 66.18 70.01 N alternative_donor CG1115,F_chr3R_1052705_1053045 chr3R + chr3R_1052701_1053045;chr3R_1052718_1053045 chr3R_1052705_1053045 chr3R_1053046_1053145;chr3R_1052605_1052700 2.13 0.00 16.00 2.50 8.70 21.05 0.00 0.00 0.00 0.00 13.64 0.00 14.81 0.00 14.81 0.00 7.14 7.69 12.90 0.00 10.53 7.41 2.04 0.00 9.52 10.00 0.00 11.43 13.04 9.38 14.71 5.00 9.52 2.13 0.00 9.09 0.00 0.00 2.17 0.00 9.38 0.00 4.55 0.00 9.38 0.00 2.00 14.29 0.00 0.00 1.89 0.00 0.00 0.00 11.11 0.00 1.25 10.00 K intron_retention RI_chr2R_9104206_9104265,CG4663 chr2R - chr2R_9116372_9116507 chr2R_9116371_9116372;chr2R_9116507_9116508 chr2R_9115675_9116371;chr2R_9116508_9116737 0.00 0.00 10.53 0.00 NA 0.00 3.85 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 K jcn_only_AD Vha68-2 chr2L + chr2L_12974422_12975613 chr2L_12974444_12975613 chr2L_12975614_12975712;chr2L_12974385_12974421 100.00 99.33 100.00 99.07 100.00 99.54 99.71 99.48 100.00 100.00 99.55 99.43 99.36 99.38 99.23 99.65 100.00 99.57 100.00 99.74 100.00 100.00 100.00 100.00 100.00 99.59 100.00 100.00 100.00 100.00 99.77 100.00 100.00 99.73 100.00 100.00 100.00 99.44 99.10 99.67 98.44 99.75 100.00 100.00 100.00 100.00 100.00 99.13 99.80 98.80 100.00 100.00 100.00 100.00 100.00 99.22 100.00 100.00 K intron_retention betaTub97EF chr3R - chr3R_23794914_23795381 chr3R_23794913_23794914;chr3R_23795381_23795382 chr3R_23794649_23794913;chr3R_23795382_23795549 0.00 0.00 0.00 0.78 0.00 0.00 0.00 2.23 0.98 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 1.57 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 1.60 0.00 0.00 0.00 0.00 1.03 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 1.47 0.82 0.00 0.35 0.00 0.00 0.00 0.55 0.00 0.32 0.00 K jcn_only_AD ERp60,I_chr2R_7776895_7777652,I_chr2R_7776895_7778171,RI_chr2R_7790917_7791377 chr2R - chr2R_7776895_7778175 chr2R_7776895_7778171 chr2R_7776795_7776894;chr2R_7778176_7778271 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.10 0.00 0.04 0.07 0.00 0.04 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention g,I_chrX_13628772_13629563 chrX - chrX_13624678_13625581 chrX_13624677_13624678;chrX_13625581_13625582 chrX_13624529_13624677;chrX_13625582_13625655 2.46 4.65 4.65 0.00 0.00 0.00 9.52 5.19 5.71 0.00 0.00 2.41 4.55 0.00 8.16 0.00 0.00 0.00 6.25 5.06 0.00 0.00 2.78 0.00 0.00 2.17 5.45 10.53 2.50 5.00 6.12 12.50 6.45 6.17 0.00 4.44 0.00 3.45 0.00 4.12 5.00 3.85 0.00 0.00 0.00 2.99 0.00 0.00 5.00 5.26 0.00 0.00 NA 9.09 2.08 3.57 0.00 1.82 K jcn_only_AA CG11790,CG11791 chr3R + chr3R_20875669_20876344;chr3R_20875669_20876902 chr3R_20875669_20876354 chr3R_20875600_20875668;chr3R_20876903_20877278 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 4.35 NA NA 6.67 NA 8.33 NA NA 0.00 NA NA NA 0.00 3.70 K alternative_acceptor CG1815,I_chr3R_27501104_27501167,I_chr3R_27501104_27501176 chr3R + chr3R_27501104_27501179;chr3R_27501104_27501167 chr3R_27501104_27501176 chr3R_27501004_27501103;chr3R_27501180_27501267 40.62 30.00 45.95 32.20 21.43 33.33 46.00 39.66 38.24 46.34 51.52 53.12 30.00 48.39 46.51 40.43 24.24 32.14 31.43 35.14 31.58 48.15 47.92 20.41 40.62 48.48 31.25 16.67 49.06 48.08 48.00 45.24 44.57 39.13 29.55 47.37 37.29 46.88 46.81 50.60 43.18 41.77 40.00 47.50 46.55 40.58 21.05 53.10 38.24 47.73 30.43 38.24 39.13 50.00 39.22 40.74 40.62 45.83 K alternative_donor gpp,I_chr3R_2271795_2272181 chr3R + chr3R_2232800_2233199 chr3R_2232814_2233199 chr3R_2233200_2233496;chr3R_2232745_2232799 93.75 100.00 88.24 87.50 91.67 92.86 95.00 96.77 90.00 90.00 100.00 92.31 94.74 100.00 91.67 91.30 83.33 78.57 95.45 95.45 NA 94.12 95.24 87.50 100.00 91.67 84.21 90.00 100.00 94.12 100.00 NA 90.91 96.30 92.86 95.24 91.67 NA 100.00 95.24 88.89 93.33 87.50 100.00 NA 100.00 NA 97.06 91.43 100.00 95.24 91.67 77.78 NA 95.45 NA NA 93.75 N jcn_only_AD CG7033 chrX + chrX_8984654_8986142 chrX_8986071_8986142 chrX_8986143_8986859;chrX_8984521_8984653 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.13 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.98 100.00 100.00 100.00 100.00 100.00 98.82 100.00 K cassette Dscam,I_chr2R_3212243_3212342,F_chr2R_3219886_3228832,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3208270_3210064 chr2R_3208270_3209087;chr2R_3209152_3210064 chr2R_3209088_3209151 chr2R_3207156_3208269;chr2R_3210065_3210223 85.71 100.00 87.50 95.24 88.89 85.71 41.67 86.67 84.21 NA 40.00 88.89 55.56 85.71 100.00 87.50 100.00 88.89 77.78 88.89 85.71 63.64 77.78 66.67 NA 75.00 85.71 NA 60.00 NA 88.89 NA 75.00 91.67 NA NA 83.33 NA 71.43 90.00 NA 95.00 83.33 80.00 NA 85.71 88.89 NA 89.47 81.82 81.82 85.71 NA NA 93.33 87.50 72.73 NA K intron_retention CG31012,I_chr3R_26643930_26646602 chr3R + chr3R_26643032_26643355 chr3R_26643031_26643032;chr3R_26643355_26643356 chr3R_26642920_26643031;chr3R_26643356_26643512 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.80 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 1.03 1.94 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive Atpalpha,I_chr3R_16783890_16785070,I_chr3R_16788018_16789830,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16774552_16787936,chr3R_16788018_16789446 chr3R_16774552_16786447,chr3R_16786548_16789446 chr3R_16787937_16788017 chr3R_16786448_16786547 chr3R_16774539_16774551;chr3R_16789447_16789578 5.56 0.00 2.27 4.05 2.33 11.76 5.26 6.41 2.97 2.86 79.55 4.17 6.67 2.44 3.85 5.88 4.65 8.11 8.16 5.17 27.78 2.99 11.76 8.00 9.09 3.45 9.09 0.00 10.71 4.00 6.52 5.00 4.49 6.76 6.25 5.56 0.00 9.09 0.00 4.23 0.00 5.56 5.41 6.52 5.66 7.55 0.00 7.89 6.32 0.00 14.29 0.00 6.90 NA 3.08 12.50 10.00 16.44 K intron_retention CtBP chr3R + chr3R_8842516_8845063 chr3R_8842515_8842516;chr3R_8845063_8845064 chr3R_8842464_8842515;chr3R_8845064_8845536 95.00 90.91 90.91 95.65 70.00 100.00 96.97 94.74 88.00 NA NA 96.67 92.31 100.00 88.24 95.45 100.00 NA 94.44 95.00 90.00 100.00 88.89 100.00 NA 100.00 100.00 100.00 94.12 NA 91.67 NA 100.00 88.89 NA 100.00 100.00 NA 100.00 100.00 NA 96.30 91.67 NA NA NA NA 76.92 96.00 NA 90.00 NA NA NA 90.91 NA 77.78 90.00 K jcn_only_AD cenB1A chr3R + chr3R_18949110_18949164 chr3R_18949114_18949164 chr3R_18949165_18949936;chr3R_18947955_18949109 0.00 0.52 0.56 1.10 0.00 0.86 0.00 0.00 0.66 0.82 0.00 0.00 1.61 0.80 1.72 0.00 0.00 0.00 0.00 0.52 1.32 0.34 0.00 0.50 0.66 0.00 1.07 0.00 0.00 0.00 1.05 0.00 0.92 0.00 0.00 0.71 0.35 0.00 2.03 0.32 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.35 0.39 1.41 0.00 0.00 0.54 0.00 0.35 1.04 K intron_retention l(1)G0320 chrX - chrX_9446817_9447484 chrX_9446816_9446817;chrX_9447484_9447485 chrX_9445171_9446816;chrX_9447485_9447817 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette Ppn,F_chr3R_24347009_24347078 chr3R - chr3R_24348983_24351592 chr3R_24348983_24349755;chr3R_24349940_24349995;chr3R_24351030_24351592 chr3R_24349756_24349939;chr3R_24349996_24351029 chr3R_24348417_24348982;chr3R_24351593_24351772 100.00 100.00 100.00 75.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 80.00 83.33 100.00 93.33 100.00 100.00 100.00 100.00 85.71 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention unc-13,I_chr4_904268_919018,I_chr4_906518_906708,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_906518_919018 chr4_906517_906518;chr4_919018_919019 chr4_906418_906517;chr4_919019_919102 0.00 0.00 0.00 4.65 0.00 0.00 0.00 1.92 0.00 0.00 NA 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 3.39 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 NA 0.00 0.00 3.45 1.64 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention iPLA2-VIA chr3L - chr3L_9854038_9854099 chr3L_9854037_9854038;chr3L_9854099_9854100 chr3L_9853351_9854037;chr3L_9854100_9854435 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD Nrx-IV chr3L + chr3L_12142009_12147050 chr3L_12146849_12147050 chr3L_12147051_12147254 100.00 100.00 100.00 93.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor MB8.chr3R.pasa.66,CG1105,I_chr3R_2892020_2892122,RI_chr3R_2892020_2892252,I_chr3R_2892305_2892645 chr3R - chr3R_2892020_2892122;chr3R_2892020_2892645 chr3R_2892020_2892252 chr3R_2891920_2892019;chr3R_2892646_2892745 2.22 0.00 0.00 0.00 0.00 2.94 2.04 3.33 2.99 0.00 0.00 3.64 3.45 3.12 2.22 2.63 3.85 0.00 3.57 1.85 4.35 2.27 1.89 2.08 3.70 0.00 2.70 0.00 2.86 0.00 5.00 0.00 0.00 3.33 3.03 5.41 0.00 2.33 0.00 3.70 3.03 1.43 3.85 0.00 0.00 2.22 2.08 2.86 1.56 3.12 1.67 7.14 0.00 0.00 2.33 5.56 0.00 2.33 K multi_cassette RI_chrX_11473566_11473702,roX2,noncoding_23149,I_chrX_11475074_11475402 chrX + chrX_11473158_11473702 chrX_11473158_11473247;chrX_11473270_11473384;chrX_11473433_11473544;chrX_11473562_11473702 chrX_11473248_11473269;chrX_11473385_11473432;chrX_11473545_11473561 chrX_11473148_11473157;chrX_11473703_11473726 12.90 NA NA 10.53 NA NA NA 16.67 19.05 10.00 NA 16.67 NA 10.00 7.14 10.00 NA NA 11.76 13.51 NA NA NA NA NA 33.33 NA NA NA NA 10.00 NA NA 14.81 NA NA NA NA NA 10.34 NA 22.22 14.29 NA NA 23.08 20.00 6.67 12.90 NA NA NA NA NA 10.53 NA 22.22 11.11 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2389272_2395659 chrX_2389272_2389644;chrX_2389762_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2392054;chrX_2392149_2392515;chrX_2392665_2393243;chrX_2393712_2395659 chrX_2389645_2389761;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521;chrX_2392055_2392148;chrX_2392516_2392664;chrX_2393244_2393711 chrX_2389172_2389271;chrX_2395660_2395759 20.00 NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette Ac3,I_chr2L_21635211_21637957,I_chr2L_21643253_21646594 chr2L + chr2L_21635211_21637658 chr2L_21635211_21635619;chr2L_21635732_21637658 chr2L_21635620_21635731 chr2L_21635129_21635210;chr2L_21637659_21637786 26.97 NA NA 38.46 NA NA 30.00 26.67 15.79 NA NA 22.73 40.00 NA 30.00 33.33 NA NA 27.27 37.50 NA NA NA NA NA NA NA NA NA NA 13.51 NA NA 26.67 NA 7.69 NA NA NA 10.53 NA 50.00 NA NA NA NA NA NA 24.14 NA 33.33 27.27 NA NA 25.00 18.18 NA NA K alternative_acceptor Ranbp16,I_chrX_15826485_15826554,I_chrX_15826655_15827277 chrX - chrX_15826485_15826554 chrX_15826495_15826554 chrX_15826555_15826588;chrX_15826385_15826484 100.00 92.31 100.00 96.55 100.00 100.00 97.14 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 95.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 NA 92.86 100.00 96.30 NA 95.65 97.78 100.00 100.00 100.00 100.00 93.33 94.74 100.00 96.88 92.31 100.00 NA NA NA 90.91 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 K jcn_only_AA CG4238 chr2L + chr2L_2029029_2029103 chr2L_2029029_2029091 chr2L_2028321_2029028;chr2L_2029104_2029418 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 K intron_retention rictor chrX - chrX_19148565_19148635 chrX_19148564_19148565;chrX_19148635_19148636 chrX_19147835_19148564;chrX_19148636_19149554 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 5.88 NA 0.00 NA 6.06 0.00 0.00 0.00 0.00 2.27 0.00 10.34 0.00 0.00 0.00 10.34 2.78 0.00 0.00 2.94 0.00 6.90 7.32 NA 0.00 NA 3.23 0.00 8.33 0.00 9.09 0.00 6.06 0.00 0.00 NA 0.00 0.00 0.00 4.76 0.00 K intron_retention Snx6,RI_chr2L_8218680_8218853,I_chr2L_8230332_8238998 chr2L - chr2L_8218872_8219115 chr2L_8218871_8218872;chr2L_8219115_8219116 chr2L_8218854_8218871;chr2L_8219116_8219215 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.11 96.30 100.00 100.00 100.00 100.00 100.00 100.00 98.68 100.00 94.44 97.06 95.56 100.00 100.00 100.00 NA 97.50 100.00 100.00 98.39 100.00 100.00 100.00 100.00 97.62 100.00 98.00 100.00 98.21 98.46 100.00 95.65 98.21 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 98.08 100.00 K jcn_only_AA SNF4Agamma,I_chr3R_16982134_16982890 chr3R + chr3R_16982134_16983336;chr3R_16982134_16982890;chr3R_16982134_16983218;chr3R_16982134_16983159 chr3R_16982134_16983164 chr3R_16982126_16982133;chr3R_16983337_16983376 12.50 NA 19.35 11.43 NA NA 8.82 15.38 10.00 NA NA 13.64 12.12 15.15 9.09 2.70 NA 14.29 13.33 12.50 NA NA NA NA NA NA NA NA NA NA 6.45 NA NA 14.29 NA NA NA NA NA NA NA 16.98 NA NA NA NA NA NA 10.91 NA NA NA NA NA 15.22 NA NA 0.00 K intron_retention park,RI_chr3L_21188731_21188785 chr3L - chr3L_21188231_21188285 chr3L_21188230_21188231;chr3L_21188285_21188286 chr3L_21188134_21188230;chr3L_21188286_21188730 0.00 0.00 NA 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 6.67 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.39 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL24,I_chr2L_13394941_13395015 chr2L - chr2L_13394941_13395015 chr2L_13394940_13394941;chr2L_13395015_13395016 chr2L_13394865_13394940;chr2L_13395016_13395065 89.44 NA NA NA NA NA 100.00 NA 88.89 NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA 90.00 NA NA NA 57.14 NA NA NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD tws,I_chr3R_5960899_5960978,CG6241 chr3R - chr3R_5955369_5960540 chr3R_5955369_5958936 chr3R_5955217_5955368 99.13 100.00 98.75 99.25 100.00 100.00 96.46 99.28 99.49 93.48 100.00 99.32 100.00 100.00 98.61 100.00 100.00 100.00 100.00 100.00 98.61 98.63 99.40 99.07 98.75 98.80 98.15 96.88 98.51 98.99 98.70 100.00 100.00 99.13 97.67 100.00 100.00 100.00 98.89 98.15 100.00 98.77 97.73 100.00 97.50 98.61 98.70 99.02 100.00 97.06 100.00 100.00 100.00 96.88 98.68 98.41 96.97 100.00 K mutually_exclusive Mlf,noncoding_7111,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CEI_chr2R_11826763_11827279 chr2R - chr2R_11824086_11825619,chr2R_11825773_11825951 chr2R_11824086_11825183,chr2R_11825385_11825951 chr2R_11825620_11825772 chr2R_11825184_11825384 chr2R_11823989_11824085;chr2R_11825952_11826483 98.08 99.07 100.00 79.59 100.00 100.00 91.38 96.75 97.24 85.37 94.55 97.08 82.61 96.30 97.18 97.10 97.78 100.00 98.41 97.62 100.00 100.00 98.39 98.25 96.15 98.11 99.06 85.71 98.57 96.55 98.08 98.73 96.06 96.26 100.00 100.00 99.42 99.10 98.29 95.92 97.96 98.28 95.92 98.41 95.28 98.78 100.00 96.63 98.70 97.66 97.87 95.45 98.92 97.67 96.92 100.00 98.44 99.28 K intron_retention CG30349,lin chr2R + chr2R_4798090_4798148 chr2R_4798089_4798090;chr2R_4798148_4798149 chr2R_4797992_4798089;chr2R_4798149_4798399 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.17 0.65 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.42 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.52 0.40 0.00 0.34 0.00 0.22 0.00 0.00 0.00 0.32 0.00 K jcn_only_AA Imp,I_chrX_10699490_10700695,RI_chrX_10699665_10700501,RI_chrX_10699665_10700695 chrX - chrX_10699547_10700501;chrX_10699503_10700501 chrX_10699665_10700501 chrX_10700502_10700547;chrX_10699299_10699502 33.93 NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA 42.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG2658 chrX - chrX_2591822_2591881 chrX_2591821_2591822;chrX_2591881_2591882 chrX_2591372_2591821;chrX_2591882_2592219 1.32 0.00 0.00 5.56 0.00 0.00 1.69 0.00 4.23 2.44 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28.24 3.76 2.26 4.60 0.00 2.47 1.65 11.96 7.50 3.23 4.26 5.68 0.00 6.56 3.85 3.52 2.56 2.94 0.88 5.63 1.03 0.00 1.27 1.32 2.99 4.55 5.95 0.00 6.25 4.00 0.00 0.00 0.00 0.00 4.29 0.00 0.00 K intron_retention Asx chr2R + chr2R_10397666_10397727 chr2R_10397665_10397666;chr2R_10397727_10397728 chr2R_10397345_10397665;chr2R_10397728_10397968 0.00 2.13 0.00 1.32 0.00 0.00 0.00 0.00 1.05 2.56 0.00 0.00 0.00 2.63 3.33 0.00 0.00 0.00 3.92 0.00 0.00 0.73 0.00 0.00 0.00 0.00 3.92 3.45 0.00 0.00 0.00 3.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.15 0.00 0.00 0.00 2.90 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_243585_244182;chr4_243673_244182;chr4_243639_244182 chr4_243657_244182 chr4_244183_244282;chr4_243557_243584 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 NA 0.00 3.95 0.00 0.00 0.00 1.18 3.23 0.00 2.13 1.27 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 6.67 0.00 1.41 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 2.50 5.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10353,I_chrX_11775936_11778830,I_chrX_11778617_11778830,RI_chrX_11780885_11780988 chrX - chrX_11775936_11777220 chrX_11775935_11775936;chrX_11777220_11777221 chrX_11775836_11775935;chrX_11777221_11777654 56.10 66.67 46.88 42.50 59.38 56.67 58.33 68.97 71.01 90.91 76.47 68.18 76.47 70.00 39.02 55.26 61.54 65.52 50.00 49.15 66.67 77.14 50.00 50.00 40.00 47.06 56.52 35.71 32.00 52.00 56.10 57.14 62.22 48.89 47.06 41.18 51.61 62.50 50.00 65.91 45.45 55.77 55.17 51.85 57.14 54.84 71.43 57.69 61.67 47.06 52.00 53.33 53.33 50.00 60.00 66.67 75.00 65.00 K alternative_acceptor Pk17E,I_chrX_18683130_18684538,I_chrX_18685493_18699326 chrX + chrX_18684343_18684544 chrX_18684343_18684538 chrX_18684218_18684342;chrX_18684545_18684638 92.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 85.71 K cassette CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157794_157864 chr4 + chr4_157794_158016 chr4_157794_157864;chr4_157959_158016 chr4_157865_157958 chr4_157699_157793;chr4_158017_158243 92.86 94.44 87.50 88.71 94.12 95.45 94.37 96.43 90.67 83.33 94.44 98.15 96.97 95.12 96.67 91.55 91.43 92.31 92.86 92.68 92.86 100.00 90.00 85.71 73.33 68.57 95.65 100.00 71.43 93.33 94.59 85.71 100.00 91.57 94.74 92.31 88.89 87.50 90.91 95.83 83.33 93.88 94.74 95.00 NA 88.89 100.00 88.89 95.95 100.00 95.00 92.86 NA NA 91.18 83.33 NA 100.00 K intron_retention BRWD3 chr3R + chr3R_20149344_20149400 chr3R_20149343_20149344;chr3R_20149400_20149401 chr3R_20148119_20149343;chr3R_20149401_20150125 92.31 95.45 96.00 97.50 94.74 100.00 96.30 87.50 90.00 92.31 88.24 90.74 95.24 100.00 80.00 91.67 94.74 94.74 89.66 92.16 78.95 96.30 88.89 86.67 95.65 100.00 90.91 79.31 97.22 97.06 90.91 95.65 96.30 93.62 100.00 96.77 97.30 91.30 88.37 89.09 93.10 92.00 100.00 87.50 74.07 88.89 84.00 92.59 97.78 88.46 89.19 94.12 90.00 91.67 90.00 90.48 92.31 94.29 K intron_retention C3G chrX - chrX_6676520_6676593 chrX_6676519_6676520;chrX_6676593_6676594 chrX_6675507_6676519;chrX_6676594_6676725 0.00 0.00 0.00 1.44 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette RI_chrX_11473566_11473702,roX2,noncoding_23149,I_chrX_11475074_11475402 chrX + chrX_11473158_11473702 chrX_11473158_11473247;chrX_11473270_11473381;chrX_11473433_11473485;chrX_11473562_11473702 chrX_11473248_11473269;chrX_11473382_11473432;chrX_11473486_11473561 chrX_11473148_11473157;chrX_11473703_11473726 18.18 22.22 11.11 10.53 NA NA NA 20.00 22.73 18.18 NA 16.67 42.86 18.18 13.33 12.90 33.33 NA 11.76 17.95 NA NA NA NA NA 33.33 33.33 NA NA NA 18.18 22.22 NA 14.81 NA NA NA NA 33.33 13.33 NA 22.22 14.29 33.33 NA 28.57 20.00 6.67 15.62 NA NA 33.33 NA NA 15.00 NA 30.00 11.11 K intron_retention Lip4 chr2L + chr2L_10530670_10530855 chr2L_10530669_10530670;chr2L_10530855_10530856 chr2L_10530314_10530669;chr2L_10530856_10531517 1.38 0.00 0.00 0.00 0.00 0.00 1.15 0.00 3.17 0.00 0.00 2.78 0.00 3.08 0.00 2.35 0.00 0.00 NA 1.80 0.00 3.46 0.91 1.90 2.90 2.27 0.00 2.35 5.71 0.00 0.00 5.41 6.19 3.45 4.82 4.41 1.83 1.09 0.00 2.42 6.60 2.33 0.00 3.03 0.00 4.72 0.00 4.59 3.70 0.00 2.73 0.00 2.48 0.00 0.00 0.00 1.61 4.22 K alternative_donor CG7702 chr3R + chr3R_14495273_14496859;chr3R_14495285_14496859 chr3R_14495421_14496859 chr3R_14496860_14497096;chr3R_14495114_14495272 72.73 NA 60.00 NA NA NA 80.00 NA NA NA NA 50.00 NA NA NA NA NA NA NA 72.73 NA NA 77.78 71.43 60.00 NA NA NA NA 80.00 NA NA NA NA NA NA NA NA NA NA 66.67 75.00 NA 85.71 NA 71.43 NA 50.00 77.78 NA 77.78 NA NA NA NA NA NA NA K intron_retention RanBPM chr2R + chr2R_6322096_6322156 chr2R_6322095_6322096;chr2R_6322156_6322157 chr2R_6321932_6322095;chr2R_6322157_6322290 0.00 6.45 0.00 4.65 0.00 8.70 4.76 0.00 7.32 NA 0.00 0.00 0.00 0.00 0.00 6.06 NA 6.67 0.00 3.45 0.00 7.69 2.70 7.14 9.09 8.70 15.62 0.00 30.00 0.00 2.94 0.00 0.00 0.00 0.00 5.00 3.45 0.00 0.00 14.29 NA 4.44 0.00 6.25 14.81 8.70 5.71 NA 8.16 0.00 0.00 0.00 6.90 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL13A,I_chr3R_1450243_1451235,EI_chr3R_1450853_1451054,snoRNA:Me28S-U2134b,snoRNA:Me28S-U2134a chr3R + chr3R_1450243_1450611 chr3R_1450242_1450243;chr3R_1450611_1450612 chr3R_1450148_1450242;chr3R_1450612_1450852 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.12 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.08 0.10 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.03 0.07 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 K cassette Pten,I_chr2L_10256507_10256803,F_chr2L_10259663_10260253 chr2L - chr2L_10256507_10257394 chr2L_10256507_10256909;chr2L_10257123_10257394 chr2L_10256910_10257122 chr2L_10256469_10256506;chr2L_10257395_10257716 77.78 66.67 87.50 35.71 100.00 87.50 58.82 77.78 80.00 80.00 83.33 66.67 72.73 66.67 60.00 85.71 100.00 75.00 64.71 80.95 83.33 NA 71.43 60.00 55.56 85.71 91.67 NA NA 75.00 83.33 77.78 NA 86.36 88.89 80.00 85.71 80.00 83.33 76.47 66.67 72.00 90.91 56.25 33.33 78.95 78.57 80.00 83.33 70.59 63.16 55.56 60.00 90.91 81.82 71.43 73.33 66.67 K alternative_acceptor UbcD2,noncoding_2473,CG6724 chr2L - chr2L_10766973_10767656 chr2L_10767013_10767656 chr2L_10767657_10767740;chr2L_10766908_10766972 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA Xe7,RI_chr3R_1493064_1493414,CRI_chr3R_1493111_1493414 chr3R - chr3R_1493028_1493414 chr3R_1493111_1493414 chr3R_1493415_1493514;chr3R_1493011_1493027 10.98 19.44 7.41 31.58 0.00 NA 13.89 9.68 9.80 NA 4.76 6.25 NA NA NA 20.00 12.00 NA 9.38 10.20 NA 17.39 12.50 8.70 NA 3.70 6.67 NA 11.54 NA 17.24 20.00 34.29 3.23 NA 19.23 3.23 4.35 NA 10.42 13.79 11.76 13.04 18.18 8.70 14.71 15.62 28.89 4.55 7.69 16.67 NA 10.34 8.33 9.52 12.82 4.00 12.24 K jcn_only_AD I_chr2L_19388570_19389922,CG17544 chr2L - chr2L_19393657_19398334;chr2L_19393657_19398350 chr2L_19393657_19398346 chr2L_19393497_19393656;chr2L_19398351_19398401 23.56 21.82 24.66 18.92 14.52 21.81 25.81 28.61 23.31 21.83 20.42 24.78 23.56 27.76 19.55 30.08 19.66 26.92 20.44 25.73 29.44 18.47 23.05 23.69 23.53 19.43 16.54 23.00 15.66 24.40 25.71 21.01 21.18 21.98 24.91 17.13 23.87 28.03 26.42 21.01 22.88 27.26 23.98 27.65 28.42 21.61 27.81 21.66 26.22 24.22 23.17 26.95 19.88 21.78 23.57 25.00 31.84 29.62 K intron_retention I_chr3R_5338175_5338299,Rlc1 chr3R - chr3R_5341073_5341123 chr3R_5341072_5341073;chr3R_5341123_5341124 chr3R_5340795_5341072;chr3R_5341124_5341406 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.60 2.33 0.00 0.00 0.00 0.00 0.00 3.88 2.56 0.72 0.00 0.00 0.95 1.75 0.00 0.00 2.40 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.28 K intron_retention XRCC1 chrX + chrX_5226044_5226101 chrX_5226043_5226044;chrX_5226101_5226102 chrX_5225715_5226043;chrX_5226102_5226468 0.00 0.00 0.00 5.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 1.32 0.00 4.65 3.28 0.00 0.00 0.00 1.61 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 4.08 0.00 0.00 0.00 8.33 3.33 0.00 0.00 3.85 0.00 0.00 0.00 0.00 3.17 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 1.59 0.00 0.00 K intron_retention hppy,I_chr2R_15105700_15106080,I_chr2R_15106144_15108248 chr2R + chr2R_15105700_15108248 chr2R_15105699_15105700;chr2R_15108248_15108249 chr2R_15105636_15105699;chr2R_15108249_15108287 11.36 NA NA 0.00 NA NA 47.37 NA 13.51 NA NA 12.20 NA 25.00 12.50 17.65 NA NA 6.25 6.25 NA 19.23 16.67 NA 10.53 8.33 6.25 NA NA NA 6.25 NA 0.00 13.33 NA NA 0.00 NA NA 7.41 NA 6.67 NA NA NA NA NA 13.33 8.33 NA NA 14.29 NA NA 15.79 NA NA NA K mutually_exclusive CG8671,I_chr2L_21275807_21277205 chr2L + chr2L_21275807_21279883,chr2L_21280448_21281131 chr2L_21275807_21277196,chr2L_21278430_21281131 chr2L_21279884_21280447 chr2L_21277197_21278429 chr2L_21275724_21275806;chr2L_21281132_21281337 71.43 71.43 50.00 50.00 50.00 75.00 66.67 66.67 72.73 75.00 50.00 62.50 66.67 80.00 40.00 60.00 80.00 66.67 80.00 62.50 50.00 71.43 72.73 63.64 83.33 50.00 62.50 62.50 60.00 75.00 57.14 66.67 77.78 66.67 75.00 85.71 75.00 71.43 66.67 73.33 75.00 50.00 80.00 62.50 66.67 77.78 71.43 85.71 63.64 83.33 72.73 83.33 75.00 83.33 71.43 75.00 85.71 83.33 K intron_retention CG3770,CG12851,F_chr2R_20839778_20839843 chr2R + chr2R_20833687_20833741 chr2R_20833686_20833687;chr2R_20833741_20833742 chr2R_20832496_20833686;chr2R_20833742_20833855 3.57 1.81 3.77 7.41 2.20 4.26 18.75 4.00 3.64 1.72 10.67 6.13 5.56 5.62 2.56 9.80 2.78 0.00 3.03 4.96 0.00 15.82 3.57 0.61 4.12 5.10 4.79 4.71 9.52 5.71 3.70 0.95 4.32 4.27 2.27 16.28 5.33 3.33 2.03 5.51 3.57 4.28 3.95 2.86 2.25 1.96 1.14 5.61 2.50 3.31 2.40 0.00 0.64 1.83 3.28 1.43 1.29 1.23 K alternative_donor CG15609,C_chr2R_12899322_12900789,I_chr2R_12902708_12903184 chr2R - chr2R_12896448_12897557 chr2R_12896448_12897005 chr2R_12896351_12896447;chr2R_12897558_12897678 20.61 18.95 18.42 23.86 21.54 23.19 16.67 17.65 21.74 27.78 16.92 18.75 20.31 19.30 18.68 15.38 16.92 23.38 15.79 18.01 15.71 42.55 14.86 15.97 21.52 12.66 21.51 29.79 29.52 25.69 18.39 25.77 41.54 16.80 23.38 27.06 21.43 18.27 32.99 26.67 28.38 20.00 21.15 20.61 31.58 22.30 17.76 38.78 20.95 10.13 19.01 16.00 22.73 18.75 23.17 18.48 14.61 30.97 K intron_retention CG4572,FI_chr3R_15689914_15690042 chr3R - chr3R_15689914_15690046 chr3R_15689913_15689914;chr3R_15690046_15690047 chr3R_15689814_15689913;chr3R_15690047_15690114 20.44 18.00 18.75 28.57 16.95 17.74 14.96 20.44 12.69 29.17 11.29 23.64 8.57 19.67 18.75 30.00 14.67 15.69 21.11 15.44 16.88 26.67 21.25 12.90 23.53 32.35 36.49 42.86 59.46 15.00 22.86 22.22 35.48 15.04 24.14 47.06 15.38 9.09 13.24 20.63 54.17 15.07 22.22 17.14 7.69 26.32 23.64 30.77 19.59 17.19 32.56 13.89 37.14 26.32 19.15 23.91 18.18 39.02 K intron_retention Ulp1 chrX - chrX_19097520_19097598 chrX_19097519_19097520;chrX_19097598_19097599 chrX_19096134_19097519;chrX_19097599_19097800 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 1.15 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG5273 chrX + chrX_653719_653808 chrX_653719_653787 chrX_653471_653718;chrX_653809_654561 62.50 57.89 58.54 NA 48.28 NA 43.75 60.53 56.16 NA 40.00 68.42 NA 70.37 65.79 56.25 65.38 67.86 NA 58.62 45.00 80.00 62.50 63.41 NA NA NA NA 81.82 NA 57.14 NA NA 70.45 NA NA 71.67 67.65 63.08 59.57 NA 53.45 65.00 70.37 NA 56.67 NA NA 52.50 80.77 61.70 NA NA 41.94 62.50 81.25 70.00 NA K intron_retention l(3)02640,I_chr3L_1337063_1337270 chr3L + chr3L_1336017_1337270 chr3L_1336016_1336017;chr3L_1337270_1337271 chr3L_1335944_1336016;chr3L_1337271_1337370 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.45 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.81 0.00 0.00 0.00 0.86 0.00 0.00 1.70 1.82 0.87 0.00 0.00 0.00 0.00 0.00 0.00 1.63 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.75 0.60 0.00 0.00 0.00 K intron_retention meso18E,I_chrX_19601491_19601568 chrX - chrX_19601491_19601568 chrX_19601490_19601491;chrX_19601568_19601569 chrX_19601429_19601490;chrX_19601569_19601635 100.00 100.00 100.00 100.00 NA 90.91 100.00 91.67 94.44 88.89 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 94.74 100.00 90.91 100.00 100.00 94.44 100.00 100.00 96.43 94.12 100.00 95.00 95.83 96.43 93.33 NA 100.00 93.33 89.47 93.75 94.44 100.00 100.00 94.44 90.00 100.00 100.00 NA 92.31 92.86 93.75 K jcn_only_AD nes chr3L - chr3L_19253331_19253632;chr3L_19253331_19253636;chr3L_19253331_19253609;chr3L_19253331_19253676;chr3L_19253331_19253745;chr3L_19253331_19253764 chr3L_19253331_19253648 chr3L_19253215_19253330;chr3L_19253765_19253779 17.70 14.29 14.29 11.63 17.14 27.27 29.09 19.23 18.00 25.00 NA 14.00 17.39 23.53 19.05 16.67 NA 12.50 13.64 16.13 31.82 40.00 18.37 13.16 24.14 12.00 25.81 28.57 18.18 9.52 16.28 12.50 15.62 13.33 18.75 19.05 41.94 30.00 21.74 15.52 18.52 9.52 6.67 7.69 18.52 18.60 20.00 6.25 8.00 NA 21.05 20.59 11.11 9.52 17.19 29.17 45.00 6.45 K jcn_only_AD eIF4E-6,RI_chr3R_24852741_24852800,I_chr3R_24852751_24852800 chr3R - chr3R_24852751_24852809 chr3R_24852751_24852800 chr3R_24852651_24852750;chr3R_24852810_24852896 29.03 NA NA NA NA NA NA NA 29.03 NA NA NA NA NA NA NA NA NA NA 39.13 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 26.09 NA NA NA NA NA NA NA NA NA K intron_retention Rnp4F,I_chrX_5214525_5214591 chrX - chrX_5214538_5214591 chrX_5214537_5214538;chrX_5214591_5214592 chrX_5214315_5214537;chrX_5214592_5214691 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 2.08 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention caz,noncoding_24110,RI_chrX_16183147_16183258,RI_chrX_16183356_16185973 chrX + chrX_16182991_16183258 chrX_16182990_16182991;chrX_16183258_16183259 chrX_16182887_16182990;chrX_16183259_16183355 7.69 NA NA NA NA NA NA NA 14.29 6.67 NA 7.41 NA NA NA NA NA NA NA 18.75 NA 8.33 4.65 10.71 10.53 NA 35.71 41.67 0.00 0.00 0.00 0.00 NA NA 7.14 13.04 4.35 6.25 6.67 11.76 NA 17.65 NA NA NA 15.00 NA 13.33 0.00 0.00 10.71 NA NA NA NA 7.69 6.67 9.09 K alternative_acceptor CaMKII,I_chr4_1058049_1058127,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,RI_chr4_1071489_1071968,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1058196_1058271 chr4_1058217_1058271 chr4_1058272_1058285;chr4_1058160_1058195 94.44 96.15 100.00 95.16 100.00 95.83 94.00 93.22 92.98 87.50 93.75 95.35 100.00 100.00 96.00 94.23 96.00 95.24 94.44 97.44 88.89 76.92 95.45 96.00 100.00 95.00 95.00 100.00 92.86 94.44 97.44 83.33 88.89 92.16 100.00 75.00 93.75 93.33 100.00 95.65 93.75 93.75 95.45 97.22 92.86 87.10 91.30 91.30 94.74 96.00 100.00 94.44 88.89 94.44 97.14 88.00 91.43 91.49 K cassette Cct1,Cct2 chr3L + chr3L_1546307_1550713 chr3L_1546307_1546598;chr3L_1546677_1550713 chr3L_1546599_1546676 chr3L_1546118_1546306;chr3L_1550714_1551288 11.93 14.09 10.61 9.09 12.40 12.12 4.82 8.36 11.31 24.19 11.76 12.88 15.38 9.70 11.30 9.36 13.53 19.05 12.23 19.63 11.41 10.73 15.72 18.13 10.00 8.52 11.88 6.94 12.31 13.85 11.50 13.73 12.15 10.74 11.35 7.64 18.62 17.60 19.54 13.04 7.10 10.37 10.08 11.32 22.46 14.69 11.66 11.05 10.00 15.05 11.43 19.82 11.94 11.93 12.11 15.54 12.68 8.74 K alternative_acceptor CG17224,RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605 chr2L - chr2L_3018025_3018278;chr2L_3018082_3018278 chr2L_3018018_3018278 chr2L_3018279_3018287;chr2L_3017982_3018017 0.00 5.88 0.00 0.00 NA 0.00 0.00 NA 1.54 0.00 8.33 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 5.88 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 2.94 0.00 11.11 0.00 NA NA 8.33 NA 14.29 0.00 NA 0.00 0.00 0.00 NA 5.56 NA 0.00 0.00 0.00 0.00 9.09 NA NA NA NA 7.14 0.00 K jcn_only_AD Mms19,I_chr3R_1059416_1059514 chr3R + chr3R_1059416_1059514 chr3R_1059457_1059514 chr3R_1059515_1059614;chr3R_1059316_1059415 100.00 100.00 100.00 100.00 96.55 97.06 100.00 100.00 98.82 NA 100.00 100.00 96.88 100.00 98.15 98.11 100.00 100.00 100.00 98.70 100.00 100.00 100.00 98.46 97.37 100.00 97.87 96.00 97.78 100.00 93.62 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 96.83 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 98.67 96.55 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 K alternative_donor eIF5,I_chrX_15882955_15883078,RI_chrX_15883163_15883424,I_chrX_15883297_15883424,EI_chrX_15885411_15885854,RI_chrX_15885416_15885611 chrX - chrX_15883143_15883470 chrX_15883143_15883424 chrX_15883079_15883142;chrX_15883471_15883504 100.00 NA NA 100.00 NA 87.50 100.00 100.00 90.00 NA NA 100.00 NA NA NA 93.33 NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 91.67 NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 94.44 NA NA NA NA NA NA NA NA 91.67 K intron_retention R_chr2R_4502755_4503407,Vps25 chr2R + chr2R_4513081_4513132 chr2R_4513080_4513081;chr2R_4513132_4513133 chr2R_4512956_4513080;chr2R_4513133_4513793 12.12 0.00 12.24 14.04 17.24 8.33 11.32 14.29 6.35 7.69 20.00 14.29 0.00 14.29 14.58 13.11 15.00 21.05 17.65 13.33 0.00 8.57 10.64 8.62 32.00 29.63 18.00 25.93 34.38 16.67 14.58 9.80 12.50 9.62 10.81 35.00 9.80 12.12 8.47 12.07 25.93 10.71 6.45 12.20 11.76 8.47 10.42 15.79 14.93 11.11 14.04 9.76 9.68 10.87 9.09 6.06 8.33 14.29 K alternative_acceptor CG30372,coilin,I_chr2R_4012973_4013037,RI_chr2R_4012976_4013037 chr2R - chr2R_4012976_4013037;chr2R_4012973_4013037 chr2R_4012979_4013037 chr2R_4013038_4013137;chr2R_4012876_4012972 75.00 66.67 63.64 90.00 80.00 66.67 81.82 85.71 82.35 NA 80.00 64.29 66.67 NA 66.67 75.00 66.67 83.33 83.33 75.00 85.71 NA 72.73 100.00 66.67 71.43 77.78 NA 57.14 83.33 75.00 NA 88.89 81.82 80.00 NA 71.43 NA NA 60.00 100.00 72.22 NA 60.00 71.43 81.82 50.00 NA 90.00 71.43 60.00 83.33 NA NA 85.71 75.00 55.56 87.50 K intron_retention CG30349,lin chr2R + chr2R_4796711_4796766 chr2R_4796710_4796711;chr2R_4796766_4796767 chr2R_4796582_4796710;chr2R_4796767_4796916 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG10959,I_chrX_8043524_8043577,I_chrX_8043625_8043682 chrX + chrX_8043510_8043577 chrX_8043524_8043577 chrX_8043578_8043624;chrX_8043424_8043509 0.00 NA NA 0.00 NA NA NA NA 5.26 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA 5.88 0.00 NA 5.26 NA NA NA NA NA NA NA NA NA 0.00 K cassette msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2579521_2586402 chr3L_2579521_2585604;chr3L_2585739_2586402 chr3L_2585605_2585738 chr3L_2579455_2579520;chr3L_2586403_2586502 98.22 97.19 98.71 96.33 98.90 98.48 98.85 97.07 98.74 97.67 99.50 98.16 98.60 98.28 97.22 98.39 98.95 96.50 97.01 96.71 98.22 94.94 97.64 98.99 99.41 99.50 98.67 95.35 96.24 98.81 96.14 100.00 95.45 98.89 98.17 99.36 98.86 98.96 97.67 98.52 91.03 97.22 97.80 100.00 98.72 96.15 97.96 98.22 97.09 98.61 96.90 99.36 100.00 96.67 96.65 98.97 100.00 97.40 K intron_retention chic,noncoding_1263,RI_chr2L_5973675_5973760,RI_chr2L_5973675_5973798,I_chr2L_5973675_5973823,RI_chr2L_5979705_5980734 chr2L - chr2L_5973675_5976610 chr2L_5973674_5973675;chr2L_5976610_5976611 chr2L_5973575_5973674;chr2L_5976611_5976782 0.00 0.04 0.00 0.00 0.06 0.00 0.12 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.09 0.13 0.00 0.00 0.00 0.00 0.00 0.05 0.03 0.00 0.00 0.00 0.11 0.48 0.24 0.00 0.00 0.00 0.04 0.08 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.03 0.00 0.04 0.00 0.00 0.00 0.05 0.00 0.00 0.01 K intron_retention CG8839,I_chr2R_8229288_8229488,I_chr2R_8229288_8231538 chr2R - chr2R_8229288_8231964 chr2R_8229287_8229288;chr2R_8231964_8231965 chr2R_8229188_8229287;chr2R_8231965_8232118 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.67 9.09 0.00 7.69 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 NA 0.00 9.09 NA 0.00 5.56 0.00 4.44 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.00 0.00 4.88 3.33 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 1.59 K intron_retention CG5522 chr2R + chr2R_12671388_12675659 chr2R_12671387_12671388;chr2R_12675659_12675660 chr2R_12671319_12671387;chr2R_12675660_12675765 2.50 2.50 4.76 3.81 0.00 7.55 6.96 2.31 3.05 0.00 2.99 4.59 4.17 8.11 2.41 3.30 0.00 10.87 6.67 3.03 0.00 2.22 1.72 1.65 4.62 4.17 9.68 7.41 7.27 1.20 3.45 0.00 0.00 5.31 0.00 0.00 1.45 0.00 2.50 3.42 2.94 1.21 3.39 2.22 0.00 0.00 0.00 0.00 3.47 3.10 0.00 0.00 0.00 14.29 4.94 0.00 0.00 0.00 K intron_retention TBPH,I_chr2R_19748981_19749882,I_chr2R_19748981_19749921,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19748981_19749899 chr2R_19748980_19748981;chr2R_19749899_19749900 chr2R_19748884_19748980;chr2R_19749900_19749968 98.04 100.00 100.00 98.00 94.12 95.45 97.92 100.00 100.00 92.86 100.00 98.04 100.00 96.30 96.88 95.83 96.67 96.97 97.37 98.36 100.00 96.00 97.37 96.97 93.10 100.00 96.97 100.00 95.65 96.55 100.00 100.00 97.83 100.00 100.00 100.00 100.00 95.45 96.67 98.18 97.62 98.33 100.00 96.97 100.00 96.97 93.75 100.00 98.28 96.00 100.00 94.74 100.00 100.00 97.78 100.00 100.00 100.00 K alternative_donor trbd chr3R - chr3R_5535271_5536202;chr3R_5535271_5536695 chr3R_5535271_5535611 chr3R_5535110_5535270;chr3R_5536696_5536730 20.69 17.39 25.93 34.21 18.75 20.83 21.21 17.95 18.97 23.08 44.44 26.19 15.00 16.67 17.39 20.59 16.67 42.31 19.23 18.37 28.57 55.56 20.59 21.74 22.22 13.64 19.23 18.18 29.63 34.78 21.74 20.00 23.68 21.62 21.05 14.29 22.73 25.00 21.74 22.86 17.39 24.44 16.67 13.64 18.75 12.50 21.05 28.12 21.05 20.00 20.69 17.39 16.67 16.67 23.08 15.38 22.22 14.29 K alternative_acceptor CG17683,I_chr2R_18774_18869 chr2R + chr2R_18774_18826;chr2R_18774_18851 chr2R_18774_18869 chr2R_18768_18773;chr2R_18870_18969 0.00 0.00 8.33 5.00 0.00 0.00 0.00 4.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 9.09 9.09 0.00 0.00 8.33 0.00 NA 0.00 10.00 5.26 0.00 10.00 5.88 9.09 9.09 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 14.29 9.09 8.33 0.00 0.00 0.00 0.00 12.50 0.00 0.00 0.00 0.00 9.09 7.69 K intron_retention CG15100 chr2R - chr2R_14736551_14736606 chr2R_14736550_14736551;chr2R_14736606_14736607 chr2R_14735399_14736550;chr2R_14736607_14736711 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 3.88 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Taf1 chr3R + chr3R_2479844_2480191 chr3R_2479843_2479844;chr3R_2480191_2480192 chr3R_2479787_2479843;chr3R_2480192_2480386 11.76 NA NA NA NA NA NA 25.00 23.53 NA NA 15.00 NA NA NA NA NA NA NA 0.00 NA NA 23.53 11.76 NA NA NA NA NA NA NA 9.52 3.70 38.46 NA NA 6.25 NA 5.88 9.09 NA 11.76 NA 9.52 8.70 0.00 13.33 8.33 12.50 13.33 NA NA NA NA NA 12.50 7.14 26.32 K jcn_only_AD heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27805342_27811232;chr3R_27805342_27810955 chr3R_27805342_27811214 chr3R_27805247_27805341;chr3R_27811233_27811433 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 8.00 0.00 2.33 NA 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 1.69 0.00 NA NA 1.75 0.00 0.00 0.00 K intron_retention CG1024 chr3R - chr3R_2203621_2203685 chr3R_2203620_2203621;chr3R_2203685_2203686 chr3R_2203552_2203620;chr3R_2203686_2203901 94.09 92.86 NA NA NA NA 90.91 100.00 94.44 NA 88.89 100.00 100.00 NA 87.50 94.44 88.89 NA 88.89 100.00 100.00 NA 93.75 93.33 100.00 NA 81.82 100.00 87.50 92.86 100.00 90.00 90.91 100.00 NA NA 92.86 NA 90.91 94.74 NA 92.86 NA 94.44 NA 93.75 100.00 100.00 100.00 93.75 90.00 81.82 100.00 92.31 100.00 100.00 95.24 100.00 K alternative_donor Myo61F,mtacp1,I_chr3L_1330291_1330865,I_chr3L_1330291_1331279,RI_chr3L_1330929_1331041,l(3)02640 chr3L + chr3L_1330929_1331041 chr3L_1330950_1331041 chr3L_1331042_1331054;chr3L_1330866_1330928 99.24 99.08 97.67 97.39 98.90 100.00 98.60 99.22 100.00 98.73 100.00 99.38 100.00 100.00 97.03 100.00 100.00 98.72 100.00 99.51 98.31 97.44 99.06 98.32 100.00 98.73 99.12 97.53 100.00 100.00 100.00 98.80 100.00 100.00 100.00 100.00 99.34 98.99 98.59 99.37 98.85 100.00 98.11 100.00 99.24 99.26 97.96 100.00 99.25 98.91 99.01 100.00 98.36 98.78 98.92 100.00 98.95 100.00 K intron_retention CG18473 chr3R + chr3R_5190257_5190313 chr3R_5190256_5190257;chr3R_5190313_5190314 chr3R_5190039_5190256;chr3R_5190314_5190593 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Exp6,I_chrX_369347_369797 chrX - chrX_365679_365781 chrX_365678_365679;chrX_365781_365782 chrX_365610_365678;chrX_365782_365944 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 92.86 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 92.31 91.67 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor RpL28,RI_chr3L_3221710_3221877,I_chr3L_3221982_3222744,snoRNA:Or-CD11c chr3L - chr3L_3221982_3222787;chr3L_3221982_3222574;chr3L_3221982_3222926;chr3L_3221982_3222365;chr3L_3221982_3222847 chr3L_3221982_3222152 chr3L_3221882_3221981;chr3L_3222927_3222958 0.29 0.00 0.00 0.19 0.00 0.44 0.68 0.11 0.98 1.10 0.58 1.58 0.00 0.00 0.20 0.00 0.00 0.00 0.22 0.43 0.00 0.34 1.47 0.00 5.26 0.56 7.14 11.59 0.85 0.00 0.00 0.00 0.00 0.26 0.00 0.00 4.08 2.44 2.08 0.90 0.00 0.14 0.00 2.56 0.00 1.03 4.00 0.00 0.34 0.00 4.76 4.55 0.29 5.26 0.43 2.86 3.53 0.10 K intron_retention CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908142_9908424,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907848_9908424 chr2L_9907847_9907848;chr2L_9908424_9908425 chr2L_9907756_9907847;chr2L_9908425_9908505 68.75 60.00 83.33 62.50 NA NA 66.67 69.23 66.67 NA 66.67 68.97 75.00 73.33 69.23 90.00 63.64 NA 75.00 58.33 45.45 72.00 78.95 73.33 64.29 NA 66.67 66.67 76.92 82.76 60.00 77.78 68.00 66.67 75.00 76.47 58.82 50.00 63.16 76.19 NA 73.08 90.91 64.29 54.55 88.89 63.64 73.33 76.92 60.00 62.50 50.00 NA NA 68.75 71.43 47.37 90.00 K intron_retention CG7816,RI_chr3R_25691122_25694436 chr3R - chr3R_25690719_25690778 chr3R_25690718_25690719;chr3R_25690778_25690779 chr3R_25690611_25690718;chr3R_25690779_25691121 0.00 0.00 0.88 0.00 0.00 0.00 0.00 1.01 1.63 1.23 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 2.34 0.00 0.00 0.00 1.19 5.43 3.92 0.00 0.00 0.00 0.00 1.67 1.26 0.00 0.00 0.00 0.00 1.61 0.00 1.64 0.00 0.00 0.00 0.00 3.88 1.54 2.70 1.25 1.41 2.06 0.00 1.72 0.00 0.00 0.00 1.15 2.15 K intron_retention cora,I_chr2R_15129291_15129988 chr2R + chr2R_15130685_15130759 chr2R_15130684_15130685;chr2R_15130759_15130760 chr2R_15130574_15130684;chr2R_15130760_15131114 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.61 0.00 0.00 0.77 0.00 0.89 0.88 0.65 0.00 0.00 0.00 1.03 0.00 0.00 1.22 0.00 0.00 0.00 0.80 0.88 0.00 0.00 0.00 0.00 0.00 0.25 1.07 0.00 0.00 0.00 0.98 0.00 0.35 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.67 0.00 0.00 0.00 0.00 0.38 0.00 0.00 K alternative_donor Ssdp,RI_chr3R_14022843_14025255 chr3R - chr3R_14022843_14024928 chr3R_14022843_14024423 chr3R_14022743_14022842;chr3R_14024929_14025096 42.86 41.18 47.06 50.00 62.50 33.33 66.67 44.44 43.40 35.71 63.64 37.50 66.67 38.89 46.67 51.85 53.33 50.00 40.00 25.00 50.00 47.83 48.15 47.37 60.00 53.33 69.23 60.00 25.00 31.82 53.33 20.00 13.89 44.12 44.44 45.45 40.91 38.89 44.44 36.36 25.00 42.86 47.06 35.00 20.00 25.00 35.71 29.73 42.50 36.36 36.84 36.84 36.36 60.00 55.56 28.57 42.86 23.81 K jcn_only_AA mr,I_chr2R_19861985_19862040 chr2R + chr2R_19861985_19862040 chr2R_19861985_19862035 chr2R_19861885_19861984;chr2R_19862041_19862140 100.00 100.00 100.00 95.45 100.00 100.00 98.04 98.67 96.77 NA 100.00 100.00 97.87 96.43 100.00 98.25 100.00 100.00 100.00 98.80 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA NA 93.62 100.00 100.00 100.00 100.00 96.88 100.00 97.22 93.55 100.00 95.45 98.59 96.43 96.15 100.00 100.00 96.97 100.00 98.61 96.97 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG3860,I_chr2R_19880382_19880479,I_chr2R_19880577_19880631,RI_chr2R_19882285_19882350 chr2R - chr2R_19880577_19880637 chr2R_19880577_19880631 chr2R_19880480_19880576;chr2R_19880638_19880731 0.00 5.00 0.00 0.00 6.25 NA 0.00 3.85 2.86 NA NA 3.23 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 7.14 0.00 0.00 6.67 6.67 4.17 0.00 0.00 0.00 4.35 NA NA 3.12 NA 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 NA 3.45 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 K intron_retention M(2)21AB,I_chr2L_107839_110405,I_chr2L_107957_108587,I_chr2L_110878_111037,I_chr2L_112022_112689,RI_chr2L_132256_132482 chr2L + chr2L_108227_108587 chr2L_108226_108227;chr2L_108587_108588 chr2L_108145_108226;chr2L_108588_108687 6.50 5.83 3.88 9.44 3.73 6.80 8.02 9.94 4.80 10.85 8.18 4.46 3.92 7.07 6.92 7.28 5.15 3.62 6.50 8.05 7.77 5.25 5.36 5.35 11.59 9.00 10.80 7.83 14.29 9.30 8.11 10.29 12.05 5.91 6.40 15.15 3.34 5.21 5.92 12.23 20.69 4.49 5.26 2.31 7.59 7.07 5.13 13.33 7.17 5.63 4.62 5.15 5.68 5.21 4.11 4.55 4.46 10.53 K cassette CaMKI,I_chr4_467862_471815,I_chr4_471136_473243,I_chr4_472116_472527,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_471136_473243 chr4_471136_471815;chr4_472081_473243 chr4_471816_472080 chr4_471036_471135;chr4_473244_473337 100.00 96.30 96.88 87.50 94.12 100.00 100.00 98.46 100.00 100.00 100.00 97.73 100.00 96.55 100.00 98.04 100.00 96.15 100.00 100.00 100.00 95.24 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 94.12 98.33 100.00 100.00 100.00 100.00 100.00 97.30 100.00 98.21 100.00 94.44 100.00 100.00 100.00 100.00 98.39 100.00 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Liprin-alpha chr2L + chr2L_6727335_6727862 chr2L_6727334_6727335;chr2L_6727862_6727863 chr2L_6727326_6727334;chr2L_6727863_6728780 8.68 19.05 4.35 17.65 10.53 9.09 0.00 8.89 12.96 NA 0.00 10.00 5.56 9.09 9.68 6.82 14.29 11.11 10.71 8.47 0.00 5.36 6.25 12.00 NA 3.85 15.38 0.00 3.92 5.71 4.17 10.53 9.52 8.93 8.33 14.81 22.73 0.00 6.90 11.59 0.00 6.06 0.00 10.00 0.00 0.00 11.11 3.80 9.09 NA 11.54 14.29 0.00 NA 6.06 10.53 NA 4.65 K cassette CG6364,I_chr3R_20116610_20116825 chr3R + chr3R_20116610_20116825 chr3R_20116610_20116666;chr3R_20116765_20116825 chr3R_20116667_20116764 chr3R_20116510_20116609;chr3R_20116826_20116874 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette CG14619,RI_chrX_21860097_21868647,I_chrX_21865109_21865522,I_chrX_21869837_21869915 chrX + chrX_21860097_21868000 chrX_21860097_21864235;chrX_21865109_21868000 chrX_21864236_21865108 chrX_21859997_21860096;chrX_21868001_21868211 35.78 29.23 29.41 50.00 39.53 34.88 44.74 43.33 36.81 55.77 29.63 40.37 28.57 41.18 40.00 61.36 30.00 35.71 47.06 32.70 54.17 24.51 35.56 23.16 24.62 50.00 22.22 33.33 33.33 65.91 50.00 38.89 67.61 35.96 36.84 62.38 21.52 21.25 25.00 35.78 41.38 36.36 53.85 23.86 43.48 33.33 25.00 55.13 44.19 23.08 23.81 22.03 31.25 17.39 37.25 28.57 20.51 64.52 K alternative_donor CG4822,I_chr2L_120081_120199,I_chr2L_120266_120420,I_chr2L_125267_128799,RI_chr2L_126228_126309 chr2L - chr2L_120266_120510 chr2L_120266_120420 chr2L_120225_120265;chr2L_120511_120512 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 NA 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 NA NA 94.44 100.00 100.00 100.00 N cassette kis,I_chr2L_228282_230537,RI_chr2L_231035_231947,RI_chr2L_242745_242800,I_chr2L_242926_250756 chr2L - chr2L_227548_229172 chr2L_227548_228132;chr2L_228282_229172 chr2L_228133_228281 chr2L_227372_227547;chr2L_229173_229382 100.00 100.00 100.00 91.26 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N jcn_only_AD CG8051,I_chrX_19198128_19201351 chrX - chrX_19198128_19199330;chrX_19198128_19199326 chrX_19198128_19201671 chrX_19198028_19198127;chrX_19201672_19201734 49.20 NA NA NA NA NA NA NA 68.00 NA NA 70.83 NA NA NA 60.00 NA NA NA NA NA NA 50.00 NA NA NA NA NA 21.43 NA NA NA 29.17 NA NA NA NA NA NA 48.39 NA NA NA NA NA 31.03 NA 21.21 54.84 NA 34.78 NA NA NA NA NA NA 54.29 K alternative_acceptor CG4267,I_chr2L_2245495_2245550 chr2L + chr2L_2242946_2243564 chr2L_2242946_2243559 chr2L_2242697_2242945;chr2L_2243565_2244415 100.00 93.75 90.91 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.67 94.12 100.00 100.00 100.00 92.31 96.88 100.00 94.44 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 100.00 100.00 93.75 100.00 97.06 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA I_chr2R_17169674_17170491,CG10069,I_chr2R_17169897_17170495,I_chr2R_17170432_17170491,I_chr2R_17171765_17171886 chr2R + chr2R_17169897_17170491;chr2R_17169897_17170495 chr2R_17169897_17169960 chr2R_17169889_17169896 0.00 4.35 0.00 1.19 2.13 1.47 0.00 3.12 1.08 1.32 0.00 0.00 3.92 2.04 0.00 0.00 0.00 0.00 2.38 1.53 0.00 0.95 2.50 2.35 0.00 0.00 0.00 0.00 0.00 1.52 0.00 1.75 4.35 1.05 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 2.50 0.00 0.00 1.59 0.00 1.55 0.00 0.00 0.00 0.00 1.82 3.45 0.00 0.00 0.00 1.20 K multi_cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27761114_27762991,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27707594_27801169 chr3R_27707594_27747354;chr3R_27747397_27784756;chr3R_27784850_27795477;chr3R_27795508_27801169 chr3R_27747355_27747396;chr3R_27784757_27784849;chr3R_27795478_27795507 chr3R_27707494_27707593;chr3R_27801170_27801219 90.00 NA NA NA 100.00 NA 100.00 100.00 NA NA NA 80.00 75.00 NA 100.00 100.00 NA NA NA 80.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA 75.00 NA NA NA K intron_retention syd,I_chr3L_7924891_7925400 chr3L - chr3L_7919938_7921016 chr3L_7919937_7919938;chr3L_7921016_7921017 chr3L_7919673_7919937;chr3L_7921017_7921217 14.29 11.11 14.29 3.45 NA 20.00 17.39 5.00 12.82 30.00 19.05 16.67 NA 6.67 19.05 13.64 11.76 5.00 22.22 11.43 21.43 37.50 18.18 17.39 35.00 16.67 10.71 12.50 12.00 0.00 24.00 NA 8.00 22.73 14.29 23.81 23.33 9.52 12.50 0.00 20.83 13.16 NA 13.04 15.00 9.68 15.00 14.29 11.43 15.62 24.00 7.14 20.00 9.52 10.53 21.05 12.50 0.00 K alternative_donor mfas,I_chr3R_7811954_7812017,I_chr3R_7818597_7818853,I_chr3R_7818607_7818853,RI_chr3R_7818607_7818970 chr3R - chr3R_7818597_7818970 chr3R_7818597_7818853 chr3R_7818507_7818596;chr3R_7818971_7818995 18.75 7.89 14.29 13.43 5.26 18.75 52.17 21.54 11.76 12.50 21.43 28.07 21.43 23.91 15.79 26.92 17.02 12.50 21.43 26.53 12.00 2.63 20.00 16.67 NA 7.69 22.73 31.25 38.46 12.50 24.32 NA 13.04 21.43 NA NA 4.35 11.11 18.75 13.46 NA 14.08 18.42 16.67 25.00 26.92 18.18 29.41 20.27 21.05 21.43 12.50 NA NA 24.39 27.78 15.00 25.00 K intron_retention Ddip2,I_chr3L_252776_253313 chr3L - chr3L_255038_255162 chr3L_255037_255038;chr3L_255162_255163 chr3L_254697_255037;chr3L_255163_255715 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 6.67 NA 0.00 0.00 NA 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 NA 3.45 0.00 0.00 4.35 0.00 0.00 0.00 0.00 NA 2.56 NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA 6.25 K intron_retention RpL34a chr3R - chr3R_21884640_21884701 chr3R_21884639_21884640;chr3R_21884701_21884702 chr3R_21884125_21884639;chr3R_21884702_21884773 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.17 0.00 0.00 0.00 0.00 0.27 0.11 0.00 0.17 0.00 0.15 0.11 0.11 0.00 0.11 0.00 0.00 0.00 0.40 0.32 0.00 0.15 0.00 0.00 0.00 0.20 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.24 0.00 0.00 0.18 0.14 0.00 0.00 0.09 0.11 0.00 0.05 0.05 0.16 K intron_retention CG9992 chrX - chrX_16277559_16278620 chrX_16277558_16277559;chrX_16278620_16278621 chrX_16277546_16277558;chrX_16278621_16278914 0.00 11.76 NA NA NA NA 0.00 3.12 0.00 NA 0.00 0.00 NA 0.00 0.00 3.23 0.00 0.00 9.09 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA 3.70 NA NA 0.00 NA 0.00 NA NA 0.00 0.00 11.76 NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 NA NA NA K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2393243;chrX_2393712_2394269;chrX_2394396_2395151;chrX_2395275_2395659 chrX_2393244_2393711;chrX_2394270_2394395;chrX_2395152_2395274 chrX_2387149_2387248;chrX_2395660_2395759 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.59 3.85 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 1.12 2.27 2.94 0.00 1.45 0.00 0.00 1.67 0.00 0.00 0.00 0.76 0.00 3.23 1.12 0.00 1.25 0.99 0.00 0.00 0.00 1.39 NA 2.94 NA 0.00 0.00 0.00 0.00 0.00 2.08 NA 0.00 0.00 0.00 0.00 K jcn_only_AD CG15321,I_chrX_9578185_9579504,I_chrX_9578185_9579582,I_chrX_9578185_9580671,RI_chrX_9578185_9581011 chrX - chrX_9578185_9579504;chrX_9578185_9579535 chrX_9578185_9579582 chrX_9578085_9578184;chrX_9579583_9579597 4.45 NA NA NA NA NA NA 10.00 15.00 NA NA 0.00 NA 0.00 NA 4.35 NA NA NA 4.17 NA NA 9.09 NA NA NA NA NA 7.50 8.70 10.00 NA 0.00 NA NA NA NA NA NA 2.38 NA 4.00 NA 0.00 NA NA NA 10.13 4.55 NA 10.00 NA NA NA NA NA NA 0.00 K intron_retention nAcRbeta-21C chr2L + chr2L_546444_546564 chr2L_546443_546444;chr2L_546564_546565 chr2L_546380_546443;chr2L_546565_546632 1.96 0.36 1.42 1.46 1.83 1.30 2.79 1.86 1.69 6.25 0.87 2.66 0.96 3.50 3.20 2.05 0.00 0.86 1.97 1.32 0.47 10.29 2.80 2.29 0.90 1.86 1.45 6.67 5.80 2.17 2.04 3.17 2.31 1.78 1.12 3.88 1.59 1.96 2.36 5.41 3.03 1.75 1.52 1.35 5.88 2.66 0.00 8.24 1.86 3.12 2.70 2.31 0.88 1.69 1.90 2.21 0.57 2.13 K alternative_acceptor Trf,I_chr2L_8073126_8073167 chr2L + chr2L_8073126_8073196 chr2L_8073126_8073167 chr2L_8073026_8073125;chr2L_8073197_8073267 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 3.85 0.00 2.17 2.27 0.00 0.00 0.00 3.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 3.03 0.00 1.43 0.00 0.00 2.78 0.00 0.00 1.32 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 1.54 1.00 K jcn_only_AD Nedd4,RI_chr3L_17523407_17523908,I_chr3L_17523717_17523908,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17523407_17523908 chr3L_17523523_17523908 chr3L_17523909_17524008;chr3L_17523307_17523406 100.00 100.00 100.00 100.00 100.00 100.00 93.62 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 97.73 96.30 97.56 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 96.77 100.00 100.00 100.00 98.89 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.70 100.00 100.00 100.00 100.00 NA 98.39 NA NA 100.00 K alternative_donor CG16936,RI_chr2R_20655101_20655166,I_chr2R_20660319_20660496 chr2R - chr2R_20655101_20655161;chr2R_20655101_20655620;chr2R_20655101_20655166 chr2R_20655101_20655476 chr2R_20655001_20655100;chr2R_20655621_20655665 3.23 4.35 0.00 0.00 0.00 0.00 4.08 3.23 0.75 0.00 0.00 3.57 0.00 2.22 6.00 0.00 3.57 0.00 2.00 2.70 4.00 0.00 4.35 4.00 0.00 4.76 4.35 14.29 7.41 13.79 10.17 4.44 3.23 0.00 4.44 8.33 1.10 0.00 1.37 1.80 0.00 3.65 3.45 7.84 7.23 10.64 6.15 7.55 3.47 2.50 3.45 0.00 0.00 1.96 0.00 2.70 2.50 3.96 K intron_retention Hmgs chr2R + chr2R_12224952_12226951 chr2R_12224951_12224952;chr2R_12226951_12226952 chr2R_12224883_12224951;chr2R_12226952_12228760 25.00 NA NA NA NA NA 25.00 NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG1486 chrX + chrX_21198024_21198087 chrX_21198023_21198024;chrX_21198087_21198088 chrX_21197830_21198023;chrX_21198088_21199018 0.00 0.00 0.00 3.51 1.27 2.53 1.23 0.88 0.72 1.43 0.00 1.71 0.00 0.00 2.15 0.00 0.00 0.00 0.00 1.30 0.00 0.00 2.02 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 1.03 1.32 0.00 0.00 0.00 0.83 1.32 0.00 2.38 2.78 0.71 1.45 1.15 0.00 0.67 0.00 1.48 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 K jcn_only_AD CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157014_157316,RI_chr4_157014_157504,I_chr4_157794_157864 chr4 + chr4_156998_157316 chr4_157014_157316 chr4_157317_157403;chr4_156984_156997 65.00 NA NA NA NA NA NA NA 65.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention spir,I_chr2L_20334199_20334626,I_chr2L_20336550_20339058 chr2L + chr2L_20343948_20344654 chr2L_20343947_20343948;chr2L_20344654_20344655 chr2L_20343743_20343947;chr2L_20344655_20344722 6.55 8.89 5.71 14.29 10.71 0.00 23.26 11.54 6.74 0.00 4.55 3.70 15.79 2.50 8.11 11.90 8.00 13.04 6.25 16.36 0.00 5.43 8.20 6.52 6.25 6.45 8.51 6.58 2.94 8.00 6.90 NA 10.26 14.81 3.23 0.00 4.44 5.56 4.44 6.90 3.45 9.46 8.33 3.45 6.25 2.38 11.63 16.67 14.29 5.80 10.42 0.00 0.00 0.00 7.14 12.20 4.62 0.00 K intron_retention CG5746,Golgin84 chr3R - chr3R_20182208_20182262 chr3R_20182207_20182208;chr3R_20182262_20182263 chr3R_20181719_20182207;chr3R_20182263_20183645 5.56 8.70 0.00 15.00 NA 11.76 8.00 16.67 11.76 NA NA 0.00 0.00 10.53 0.00 19.05 NA 0.00 4.76 7.32 NA NA 10.00 3.45 NA 0.00 17.65 46.67 6.67 NA 9.09 NA 0.00 6.25 0.00 NA 2.63 0.00 9.68 11.54 14.29 0.00 0.00 0.00 0.00 9.09 0.00 NA 9.09 5.56 0.00 NA 4.17 5.56 10.53 0.00 2.70 0.00 K mutually_exclusive HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13165623_13176198,chrX_13176263_13179235 chrX_13165623_13170467,chrX_13170581_13179235 chrX_13176199_13176262 chrX_13170468_13170580 chrX_13165515_13165622;chrX_13179236_13179281 33.33 NA NA 14.29 60.00 NA 20.00 50.00 33.33 NA 0.00 25.00 27.27 57.14 42.86 38.46 37.50 37.50 42.86 25.00 NA 16.67 50.00 33.33 20.00 23.53 20.00 NA 36.36 33.33 33.33 NA 44.44 0.00 NA 17.65 NA 25.00 NA 30.00 33.33 30.00 NA NA 60.00 33.33 NA 30.00 20.00 NA 38.46 NA NA NA 20.00 NA NA NA K intron_retention brm,I_chr3L_15968197_15968325 chr3L - chr3L_15964334_15964393 chr3L_15964333_15964334;chr3L_15964393_15964394 chr3L_15963115_15964333;chr3L_15964394_15965185 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8929 chr2R + chr2R_16215069_16215371 chr2R_16215068_16215069;chr2R_16215371_16215372 chr2R_16214949_16215068;chr2R_16215372_16215639 100.00 100.00 NA 100.00 NA 88.89 95.00 94.74 95.45 NA NA 95.24 NA 88.89 100.00 100.00 100.00 NA 100.00 93.33 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 NA NA 100.00 100.00 NA NA NA 100.00 100.00 100.00 95.24 100.00 100.00 NA 100.00 NA NA 94.12 90.91 100.00 NA 100.00 NA 100.00 NA NA NA K cassette eas,REI_chrX_16172581_16175010,REI_chrX_16172581_16177702 chrX + chrX_16172581_16174918;chrX_16172581_16175010 chrX_16172581_16172726;chrX_16172795_16175010,chrX_16172795_16174918 chrX_16172727_16172794 chrX_16172481_16172580;chrX_16175011_16175110 6.90 NA NA NA NA NA NA 9.09 4.00 NA NA 4.55 NA NA 5.00 10.71 NA NA 5.56 12.50 NA NA 7.14 NA NA NA NA NA NA NA 11.11 NA NA 5.00 20.00 NA NA NA NA NA NA 4.17 7.69 NA NA NA NA NA 16.13 NA NA NA NA NA 5.56 6.67 NA NA K intron_retention CG17278 chr3R - chr3R_16847027_16847126 chr3R_16847026_16847027;chr3R_16847126_16847127 chr3R_16846757_16847026;chr3R_16847127_16847306 0.00 0.00 0.00 0.36 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.26 0.00 0.42 1.08 0.00 0.00 0.00 0.31 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RI_chr2R_19244231_19244378,vir chr2R - chr2R_19252911_19252969 chr2R_19252910_19252911;chr2R_19252969_19252970 chr2R_19250023_19252910;chr2R_19252970_19253646 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 K alternative_donor CG1347 chr3R + chr3R_1495515_1499211;chr3R_1495452_1499211 chr3R_1496295_1499211 chr3R_1499212_1502282;chr3R_1495435_1495451 100.00 100.00 100.00 92.31 93.33 93.33 97.44 95.65 100.00 87.50 100.00 82.22 92.59 96.00 100.00 97.44 100.00 94.12 96.43 95.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.95 95.24 95.24 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 95.24 96.43 100.00 100.00 91.67 100.00 95.45 100.00 95.45 100.00 100.00 100.00 95.83 100.00 100.00 100.00 K jcn_only_AA I_chrX_17546225_17546531,CG8211 chrX - chrX_17549488_17549815 chrX_17549492_17549815 chrX_17549816_17550846;chrX_17547855_17549487 97.33 98.08 97.96 95.38 94.12 96.88 96.49 100.00 100.00 93.94 96.00 98.44 100.00 96.88 100.00 97.67 100.00 100.00 100.00 93.98 100.00 98.20 97.37 95.00 100.00 97.67 94.64 98.21 98.31 97.96 83.67 96.77 95.79 100.00 91.30 100.00 94.34 92.16 98.39 97.62 96.55 97.33 96.67 98.59 98.39 96.36 92.45 96.77 96.39 95.24 95.59 100.00 95.35 100.00 96.97 97.73 90.62 95.83 K intron_retention mew,I_chrX_13133259_13150649 chrX - chrX_13117886_13119016 chrX_13117885_13117886;chrX_13119016_13119017 chrX_13117859_13117885;chrX_13119017_13119144 0.00 NA NA NA NA NA NA 11.76 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 13.33 NA NA 0.00 0.00 NA NA NA 0.00 NA NA NA NA NA NA 5.56 NA NA NA NA NA NA NA NA NA K intron_retention CG42574,I_chr3R_621543_625413,I_chr3R_621546_625413 chr3R - chr3R_622790_625413 chr3R_622789_622790;chr3R_625413_625414 chr3R_622387_622789;chr3R_625414_625513 60.00 77.78 63.64 53.57 NA NA 52.63 80.00 51.11 60.00 NA 60.00 NA NA 66.67 73.33 NA NA NA 62.96 NA 70.00 63.41 81.82 52.00 NA 69.57 51.92 32.43 66.67 NA NA 47.92 63.16 50.00 61.54 73.47 54.17 69.23 45.16 41.67 61.54 NA 66.67 41.67 41.67 50.00 35.00 62.50 NA 52.17 81.25 47.06 NA NA NA NA 36.36 K intron_retention cdi chr3R - chr3R_14875954_14876012 chr3R_14875953_14875954;chr3R_14876012_14876013 chr3R_14875868_14875953;chr3R_14876013_14876211 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.04 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention deltaCOP,I_chrX_1754047_1754089,I_chrX_1755132_1755191,E_chrX_1755139_1755188,I_chrX_1757755_1757801 chrX - chrX_1755132_1755188 chrX_1755131_1755132;chrX_1755188_1755189 chrX_1755039_1755131;chrX_1755189_1755288 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.68 0.00 0.00 0.00 0.00 0.41 2.47 11.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.40 K intron_retention CG8165,CG8176,I_chr3R_5348614_5348964 chr3R + chr3R_5341890_5346774 chr3R_5341889_5341890;chr3R_5346774_5346775 chr3R_5341790_5341889;chr3R_5346775_5347072 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 NA 0.00 2.00 0.00 0.00 0.00 1.77 0.00 0.00 3.23 1.61 0.00 0.00 0.00 0.00 0.00 0.00 7.14 NA 0.00 0.00 2.94 NA 0.00 1.98 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.09 0.00 0.00 NA 0.00 0.00 0.00 2.48 7.69 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 K jcn_only_AA F_chr3RHet_1879085_1900358,Alg-2 chr3RHet - chr3RHet_1898928_1898983;chr3RHet_1898930_1898983;chr3RHet_1898919_1898983 chr3RHet_1898895_1898983 chr3RHet_1898984_1899090;chr3RHet_1898558_1898894 3.17 2.63 5.15 3.12 1.64 0.00 1.76 3.40 4.00 0.00 2.70 5.13 4.55 2.16 5.65 4.07 3.96 2.06 3.25 1.55 2.53 0.00 5.19 7.45 5.48 6.19 0.00 4.76 4.48 2.38 4.37 0.00 NA 4.85 5.26 3.70 7.55 4.55 1.10 3.49 6.67 2.93 2.25 2.27 16.28 2.30 2.33 3.23 5.84 2.20 1.25 7.78 1.59 1.79 5.52 1.77 2.29 2.78 K jcn_only_AD CG16936,RI_chr2R_20655101_20655166,I_chr2R_20660319_20660496 chr2R - chr2R_20655101_20655161;chr2R_20655101_20655620;chr2R_20655101_20655476 chr2R_20655101_20655166 chr2R_20655001_20655100;chr2R_20655621_20655665 0.00 1.01 0.00 0.00 1.59 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 1.30 0.00 14.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 NA 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 1.37 K jcn_only_AD CG14872,REI_chr3R_11334285_11334336 chr3R - chr3R_11334285_11334385 chr3R_11334285_11334336 chr3R_11334185_11334284;chr3R_11334386_11334436 12.75 14.29 18.92 11.11 24.44 12.50 30.34 12.96 13.53 10.26 14.89 21.21 17.24 10.34 13.92 12.37 22.81 15.19 15.07 12.40 21.28 4.08 9.24 12.64 1.92 9.09 1.80 4.29 13.04 15.00 17.86 6.41 5.05 19.35 8.82 15.66 14.43 8.57 8.11 13.45 2.96 18.40 20.83 10.60 11.54 6.11 12.75 7.26 17.91 13.85 12.10 10.81 15.71 22.67 10.84 12.82 11.48 10.86 K intron_retention CG12065,CE_chrX_8469528_8477573 chrX + chrX_8478609_8479842 chrX_8478608_8478609;chrX_8479842_8479843 chrX_8478489_8478608;chrX_8479843_8479951 1.06 0.85 0.32 0.28 0.83 0.00 1.45 0.90 1.14 0.00 0.37 1.89 2.43 3.75 1.91 1.66 0.00 0.59 1.86 0.79 0.64 2.10 1.96 1.32 1.93 0.70 2.00 2.46 4.17 0.89 2.34 1.04 1.58 1.39 2.61 1.02 0.87 1.05 1.52 2.72 1.02 0.96 0.00 0.00 1.05 1.45 1.06 3.61 1.10 1.60 0.99 0.84 0.68 0.00 1.49 0.60 1.29 1.29 K intron_retention gp210,I_chr2R_1653709_1654789,I_chr2R_1655359_1655422 chr2R + chr2R_1658362_1659420 chr2R_1658361_1658362;chr2R_1659420_1659421 chr2R_1658311_1658361;chr2R_1659421_1659492 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_donor CG8531,RI_chr2R_10144869_10144912 chr2R + chr2R_10145224_10145276;chr2R_10145070_10145276 chr2R_10145138_10145276 chr2R_10145277_10145393;chr2R_10144926_10145069 1.25 1.25 1.04 0.83 1.59 1.41 0.00 5.07 9.09 2.04 1.30 0.69 0.00 1.59 1.01 7.44 0.00 1.20 0.00 0.48 1.28 22.58 0.99 0.96 1.59 0.00 0.82 1.03 1.30 1.39 17.16 1.61 1.05 5.69 1.61 1.61 1.03 11.69 0.95 0.91 1.92 0.65 1.64 1.16 1.47 1.18 1.25 1.54 0.75 8.26 8.85 0.00 1.75 1.45 1.10 1.11 1.03 1.69 N alternative_donor Idgf2 chr2L + chr2L_16449744_16449802 chr2L_16449748_16449802 chr2L_16449803_16449871;chr2L_16449665_16449743 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG10737 chr2R + chr2R_15062754_15063770 chr2R_15062814_15063770 chr2R_15063771_15063852;chr2R_15062592_15062753 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor Acf1,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27624356_27624427 chr3R_27624356_27624414 chr3R_27624256_27624355;chr3R_27624428_27624527 100.00 95.45 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 97.22 94.12 100.00 100.00 98.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 95.00 100.00 97.44 94.12 100.00 100.00 100.00 97.22 96.43 100.00 96.15 100.00 100.00 100.00 100.00 100.00 96.77 98.08 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Cyp311a1 chrX - chrX_11925250_11925308 chrX_11925249_11925250;chrX_11925308_11925309 chrX_11924872_11925249;chrX_11925309_11925479 30.77 NA NA NA NA NA 30.77 NA NA NA NA 26.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Vinc,I_chrX_2114558_2115574,I_chrX_2114558_2116113 chrX - chrX_2114558_2116264 chrX_2114558_2116113 chrX_2114458_2114557;chrX_2116265_2116308 0.00 0.00 0.92 0.75 0.00 0.00 2.70 0.70 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 1.20 0.00 0.00 0.95 0.00 0.00 0.00 0.00 4.35 3.12 7.69 0.00 0.00 0.00 0.70 0.00 0.00 0.00 1.56 1.30 0.00 0.00 2.63 0.00 0.00 1.36 0.00 0.00 0.00 0.00 0.00 0.27 0.56 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 K cassette CG33232,I_chr3L_2484838_2495010 chr3L + chr3L_2484838_2495010 chr3L_2484838_2485072;chr3L_2485229_2495010 chr3L_2485073_2485228 chr3L_2484830_2484837;chr3L_2495011_2495110 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 92.86 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention RpL29,I_chr2R_17184688_17191389 chr2R + chr2R_17181380_17181558 chr2R_17181379_17181380;chr2R_17181558_17181559 chr2R_17181355_17181379;chr2R_17181559_17181664 0.24 0.39 0.04 0.15 0.04 0.11 0.10 0.03 0.10 0.14 0.07 0.12 0.07 0.14 0.07 0.17 0.13 0.13 0.18 0.12 0.09 1.72 0.65 0.20 0.00 0.09 1.56 1.01 0.81 1.90 0.25 0.94 1.71 0.21 1.20 1.52 0.24 0.27 0.28 0.25 1.21 0.14 0.15 0.40 0.33 1.54 0.50 1.64 0.30 0.39 0.48 0.24 0.37 1.61 0.14 0.23 0.20 2.03 K intron_retention CG31619 chr2L + chr2L_21701181_21701763 chr2L_21701180_21701181;chr2L_21701763_21701764 chr2L_21700855_21701180;chr2L_21701764_21701938 14.69 16.92 15.49 15.94 10.74 13.39 17.05 17.37 11.39 6.67 25.40 11.23 34.72 13.85 14.48 9.32 10.71 20.90 14.69 16.73 21.21 13.64 12.46 12.56 15.17 10.71 21.08 33.73 51.47 9.33 12.16 19.51 13.51 9.55 17.89 34.07 8.49 12.16 11.11 13.24 31.67 11.20 11.11 15.45 21.74 18.27 17.81 15.38 10.65 33.61 14.49 13.39 16.92 25.62 11.59 18.75 27.04 9.76 K alternative_acceptor RhoGAP92B chr3R + chr3R_15737582_15738036 chr3R_15737582_15738033 chr3R_15736615_15737581;chr3R_15738037_15739398 100.00 93.75 100.00 98.75 100.00 100.00 98.65 100.00 98.98 100.00 97.83 98.75 100.00 97.87 100.00 98.82 97.62 100.00 98.21 98.11 100.00 98.25 98.59 98.15 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 98.44 100.00 100.00 98.94 100.00 100.00 100.00 97.62 100.00 100.00 96.59 98.28 98.33 100.00 97.22 100.00 100.00 97.92 98.36 100.00 K intron_retention CG34394,I_chr2L_3365674_3365965 chr2L - chr2L_3361444_3362998 chr2L_3361443_3361444;chr2L_3362998_3362999 chr2L_3360996_3361443;chr2L_3362999_3363195 3.98 0.00 0.00 0.00 0.00 0.00 8.00 0.00 6.67 5.26 0.00 0.00 6.67 NA 0.00 20.00 6.67 0.00 13.33 0.00 0.00 17.27 3.33 0.00 7.41 NA 7.69 5.26 4.11 5.71 0.00 3.85 10.34 0.00 0.00 6.25 2.13 0.00 0.00 4.76 6.25 8.00 NA 9.38 8.33 6.45 0.00 7.21 6.52 7.14 0.00 5.26 0.00 NA 0.00 0.00 NA 7.41 K intron_retention CG7766,I_chrX_8993495_8994545,I_chrX_8991338_8991387 chrX - chrX_8990009_8991387 chrX_8990008_8990009;chrX_8991387_8991388 chrX_8989859_8990008;chrX_8991388_8991487 0.00 0.00 0.00 4.44 0.00 0.00 15.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 NA 0.00 3.64 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 3.12 0.00 0.00 0.00 3.12 0.00 0.00 0.00 2.06 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 K alternative_acceptor Paip2,noncoding_16407,I_chr3R_8809774_8809832 chr3R + chr3R_8807110_8809456 chr3R_8807110_8809436 chr3R_8807046_8807109;chr3R_8809457_8809605 0.00 0.00 0.00 0.00 0.00 0.00 2.25 1.23 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 2.38 2.38 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive Gug,R_chr3L_8444636_8444874,I_chr3L_8455244_8456103 chr3L + chr3L_8445229_8456103,chr3L_8456338_8456400 chr3L_8445229_8455071,chr3L_8455204_8456400 chr3L_8456104_8456337 chr3L_8455072_8455203 chr3L_8445200_8445228;chr3L_8456401_8460667 83.34 NA NA 66.67 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N jcn_only_AA CG34394,I_chr2L_3365674_3365965,RI_chr2L_3365677_3365965,I_chr2L_3365701_3365757 chr2L - chr2L_3365976_3367244;chr2L_3365677_3367244 chr2L_3365674_3367244 chr2L_3367245_3367719;chr2L_3365601_3365673 29.10 30.56 32.50 20.00 23.08 30.77 26.79 29.51 31.37 25.71 14.63 22.77 28.57 19.44 25.71 28.07 27.50 38.89 30.30 29.35 37.78 28.69 32.76 28.85 40.38 29.41 28.33 31.82 16.67 28.07 35.71 NA 26.53 22.03 29.82 32.20 25.51 24.07 28.72 32.00 NA 37.00 25.93 38.46 24.00 34.62 40.62 44.00 32.73 32.26 37.14 41.67 25.81 19.23 39.02 20.00 28.57 NA K cassette Pkn,CI_chr2R_5143544_5146344,I_chr2R_5171635_5172166 chr2R - chr2R_5143215_5146344;chr2R_5143544_5146344 chr2R_5143544_5144914,chr2R_5143215_5144914;chr2R_5145566_5146344 chr2R_5144915_5145565 chr2R_5143018_5143214;chr2R_5146345_5146444 8.33 5.13 9.68 8.89 8.00 9.38 4.55 5.71 11.48 9.84 9.09 14.04 15.00 9.09 10.00 11.43 4.55 3.45 10.53 12.00 4.76 8.51 8.54 11.29 7.32 5.00 5.06 5.48 10.14 6.67 8.33 10.71 18.00 9.30 12.12 8.06 10.71 7.55 5.10 6.98 8.33 9.23 8.33 4.71 9.38 5.13 4.88 11.76 8.16 4.44 7.25 5.56 8.70 7.41 3.57 9.68 7.41 11.43 K intron_retention CG18004 chr2R + chr2R_6773038_6773094 chr2R_6773037_6773038;chr2R_6773094_6773095 chr2R_6772971_6773037;chr2R_6773095_6773178 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.00 0.00 0.00 2.94 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Gp150,I_chr2R_18205316_18205386,RI_chr2R_18206133_18212679,I_chr2R_18211853_18212679,RI_chr2R_18212600_18212679,I_chr2R_18213233_18213308 chr2R + chr2R_18205243_18205386 chr2R_18205242_18205243;chr2R_18205386_18205387 chr2R_18205216_18205242;chr2R_18205387_18205459 14.43 12.20 11.56 8.55 9.57 15.35 29.76 14.00 10.38 18.03 10.47 14.10 16.10 13.16 13.11 8.82 9.55 8.71 13.15 15.92 10.63 10.94 23.35 21.54 43.51 29.38 49.12 34.69 47.56 10.61 12.59 17.39 10.69 12.15 16.87 43.04 14.16 22.83 19.88 18.97 34.78 10.26 9.77 27.14 9.09 25.00 17.24 14.43 10.79 26.23 18.08 13.33 15.87 16.00 12.25 18.18 14.10 15.48 K jcn_only_AA CG7110,E_chr2L_13399145_13399217,CR_chr2L_13405706_13410507 chr2L + chr2L_13399141_13399217 chr2L_13399141_13399192 chr2L_13399135_13399140;chr2L_13399218_13399317 0.00 4.00 0.00 1.85 NA 3.03 5.13 1.79 0.00 NA 9.52 0.00 0.00 2.27 0.00 3.39 NA 3.70 2.63 1.67 0.00 8.70 3.03 0.00 0.00 0.00 2.33 NA 0.00 NA 2.08 NA NA 0.00 3.03 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 4.55 NA NA 0.00 0.00 3.53 0.00 0.00 3.33 NA NA 3.57 NA NA NA K intron_retention CG9684 chr3R - chr3R_4187404_4187629 chr3R_4187403_4187404;chr3R_4187629_4187630 chr3R_4186522_4187403;chr3R_4187630_4188103 0.00 0.00 0.00 31.82 0.00 4.35 6.25 0.00 0.00 NA 0.00 0.00 7.41 0.00 0.00 2.13 4.55 0.00 0.00 0.00 0.00 NA 9.09 0.00 0.00 8.33 0.00 NA NA NA 0.00 NA NA 4.65 12.50 7.69 0.00 NA 9.09 0.00 NA 4.65 0.00 12.50 NA 0.00 0.00 NA 2.13 3.85 4.35 NA NA NA 0.00 0.00 5.56 0.00 K alternative_acceptor Su(var)2-10,RI_chr2R_5006333_5006392 chr2R + chr2R_5006553_5008568;chr2R_5006553_5007804;chr2R_5006553_5008598 chr2R_5006553_5008282 chr2R_5006405_5006552;chr2R_5008599_5008637 49.02 40.91 45.24 30.00 60.61 57.58 66.67 60.98 59.04 44.19 70.00 27.08 64.86 46.43 55.81 48.00 27.59 46.43 58.97 57.84 61.29 29.41 44.87 35.71 46.81 26.32 46.55 48.65 50.00 54.35 51.61 49.02 50.00 48.33 52.38 25.42 35.59 35.42 33.33 52.13 52.63 51.35 67.65 38.64 36.36 49.15 52.27 64.71 61.43 45.61 50.00 47.22 44.19 41.46 62.50 46.30 53.57 67.57 K alternative_donor CG13551,I_chr2R_19265701_19270570 chr2R - chr2R_19270646_19270887 chr2R_19270646_19270842 chr2R_19270612_19270645;chr2R_19270888_19270938 6.75 4.74 6.41 8.20 4.29 5.23 6.31 7.24 4.11 3.23 3.05 6.56 5.62 6.36 5.49 5.03 3.03 7.33 5.16 8.37 4.22 15.00 19.23 17.95 11.76 6.45 19.05 NA 10.00 26.32 5.45 6.38 5.71 3.77 13.64 12.00 12.79 4.62 10.87 25.45 8.00 6.91 4.60 10.78 7.50 12.24 18.75 3.85 3.53 11.11 16.67 11.76 11.94 14.55 4.79 6.60 8.77 4.00 K jcn_only_AA Galpha49B,I_chr2R_8501587_8501648,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8500357_8501759;chr2R_8500357_8501071 chr2R_8500357_8501648 chr2R_8500333_8500356;chr2R_8501760_8501850 5.79 NA NA NA NA NA 15.00 6.90 2.78 NA NA 6.82 0.00 0.00 NA 7.41 NA NA NA 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA 4.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 11.11 NA NA NA NA NA NA NA NA NA K intron_retention CG30392,CG30390 chr2R - chr2R_17178476_17178536 chr2R_17178475_17178476;chr2R_17178536_17178537 chr2R_17178451_17178475;chr2R_17178537_17179086 90.45 NA 90.00 76.19 NA NA 77.78 92.31 80.00 NA NA 77.27 53.85 90.00 90.00 85.71 NA NA 87.50 86.96 100.00 81.82 100.00 90.91 NA 100.00 NA NA 94.44 90.00 90.00 100.00 94.44 94.44 100.00 90.91 NA NA NA 69.23 95.00 94.74 NA 100.00 81.82 94.74 80.00 100.00 85.29 83.33 NA 90.00 66.67 100.00 91.67 90.91 93.33 98.41 K intron_retention Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2611558_2611638 chr3L_2611557_2611558;chr3L_2611638_2611639 chr3L_2611316_2611557;chr3L_2611639_2611710 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.59 0.45 0.00 0.91 0.36 0.35 0.32 1.66 0.00 0.57 0.00 0.00 0.31 0.27 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.64 0.00 0.00 0.21 0.00 0.39 0.32 0.00 0.32 0.62 0.00 0.00 0.30 0.00 0.28 0.60 0.42 0.27 0.00 0.64 0.00 0.38 0.00 0.00 0.00 K jcn_only_AD tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_562850_562904 chr3R_562850_562902 chr3R_562745_562849;chr3R_562905_562974 94.35 92.05 95.45 93.97 94.05 96.03 93.85 94.10 94.58 96.30 92.02 94.55 94.41 94.24 92.15 92.36 94.25 93.09 94.35 95.26 93.89 94.32 94.25 94.59 95.58 93.07 94.62 96.33 91.57 92.16 93.06 94.49 94.21 94.59 96.03 94.97 94.37 97.09 97.22 95.45 96.08 92.61 88.61 94.64 95.36 92.51 97.55 93.55 94.13 96.71 93.20 96.30 95.74 93.41 93.57 94.52 95.95 91.74 N intron_retention noncoding_4261 chr2L + chr2L_21930182_21930326 chr2L_21930181_21930182;chr2L_21930326_21930327 chr2L_21930148_21930181;chr2L_21930327_21930694 2.63 4.04 1.20 3.70 0.00 0.00 3.24 1.92 2.76 1.75 1.09 3.70 0.00 2.63 2.44 3.00 0.00 3.17 4.35 2.91 3.23 3.54 3.10 2.90 3.17 4.11 3.69 4.93 2.86 1.44 2.99 0.76 1.03 3.31 4.76 3.51 1.69 1.50 2.63 1.99 2.70 0.63 3.45 1.55 1.23 1.90 2.29 2.06 2.41 3.18 3.17 1.20 3.61 0.00 0.95 2.10 0.00 1.65 K intron_retention CG17715,I_chr2L_22741825_22741944,I_chr2L_22742106_22746918 chr2L + chr2L_22741825_22741945 chr2L_22741824_22741825;chr2L_22741945_22741946 chr2L_22741725_22741824;chr2L_22741946_22741987 18.18 23.08 13.51 30.49 13.73 19.23 40.54 16.50 12.96 14.81 27.78 20.48 8.96 12.24 16.00 12.50 15.69 11.76 20.55 15.60 20.93 13.51 16.22 18.18 30.43 22.64 30.51 34.78 45.45 11.63 29.09 8.51 10.77 20.45 19.35 47.62 19.35 18.52 28.12 20.37 17.07 13.89 7.81 22.22 8.93 15.87 23.81 12.63 16.95 18.18 29.03 24.14 10.34 19.05 13.89 16.67 18.92 8.40 K jcn_only_AD ZnT63C chr3L + chr3L_3304022_3304601;chr3L_3303837_3304601 chr3L_3303853_3304601 chr3L_3304602_3304665;chr3L_3303742_3303836 93.68 95.87 90.08 96.24 92.37 95.87 93.15 91.33 92.16 95.80 95.76 89.92 93.33 94.83 94.07 97.42 95.41 87.07 96.61 90.21 92.78 89.08 93.70 92.93 95.61 93.68 92.52 91.35 97.50 92.78 91.52 89.23 88.68 90.62 94.44 94.90 90.48 93.94 93.22 96.58 88.89 94.94 92.55 92.67 78.79 94.23 94.12 98.11 92.94 94.07 94.83 96.64 91.30 96.67 95.06 94.77 90.76 95.00 K jcn_only_AD CG10992,RI_chrX_13675767_13676018 chrX - chrX_13675767_13675842;chrX_13675767_13676018 chrX_13675767_13675872 chrX_13675699_13675766;chrX_13676019_13676118 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.13 0.00 0.00 0.10 0.18 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 K intron_retention RpS3A,I_chr4_87364_87465,I_chr4_87533_87717,I_chr4_87549_87717,I_chr4_87549_87769 chr4 - chr4_87533_87757 chr4_87532_87533;chr4_87757_87758 chr4_87466_87532;chr4_87758_87817 100.00 99.97 99.98 99.99 99.96 100.00 99.99 99.99 99.98 99.92 100.00 100.00 100.00 99.98 100.00 99.99 100.00 99.97 99.98 99.98 100.00 100.00 100.00 99.96 100.00 100.00 99.97 100.00 100.00 99.91 99.98 100.00 100.00 99.98 100.00 100.00 100.00 99.94 100.00 100.00 100.00 99.99 99.97 100.00 99.96 99.98 100.00 100.00 99.98 99.96 100.00 100.00 100.00 100.00 100.00 99.97 100.00 99.98 K alternative_donor CG13319,RI_chr2R_8812301_8816468,noncoding_6439,sugarbabe chr2R + chr2R_8812158_8816468 chr2R_8812334_8816468 chr2R_8816469_8816550;chr2R_8811927_8812157 83.33 NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 83.33 NA K alternative_acceptor CG14194 chrX + chrX_19088052_19088400;chrX_19088052_19088528 chrX_19088052_19088456 chrX_19087981_19088051;chrX_19088529_19089031 97.96 98.41 100.00 95.24 95.35 98.08 97.10 98.61 98.40 97.50 94.59 98.90 97.87 97.78 94.83 98.31 100.00 100.00 97.96 97.66 95.65 97.70 97.83 95.40 98.28 97.83 98.02 97.87 96.00 100.00 97.87 100.00 100.00 97.22 97.73 94.55 98.23 98.61 97.98 98.77 100.00 97.78 100.00 98.67 97.83 100.00 100.00 96.00 97.53 98.18 98.73 97.62 97.87 95.16 98.08 98.21 95.77 100.00 K alternative_acceptor Mocs1,I_chr3L_11064230_11064309 chr3L + chr3L_11064230_11064658 chr3L_11064230_11064309 chr3L_11064151_11064229;chr3L_11064659_11065510 2.17 0.00 8.33 15.00 6.67 0.00 5.26 5.26 5.71 5.26 NA 12.00 NA NA 0.00 13.33 NA 0.00 20.00 9.52 0.00 6.25 2.38 4.35 0.00 NA 2.22 1.67 6.52 0.00 0.00 7.69 2.17 4.76 0.00 0.00 0.00 0.00 0.00 1.96 0.00 6.67 NA 2.50 0.00 4.17 5.56 0.00 0.00 2.78 2.27 0.00 0.00 0.00 0.00 4.35 0.00 0.00 K alternative_acceptor SD23414,CG9125,I_chrX_16696492_16696589 chrX - chrX_16696492_16696589 chrX_16696503_16696589 chrX_16696590_16696689;chrX_16696392_16696491 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 100.00 94.44 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 96.43 100.00 100.00 97.83 100.00 100.00 100.00 97.22 95.45 97.50 98.51 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 96.97 97.44 98.68 K jcn_only_AA Tsp42Ea,CG30159 chr2R + chr2R_2880283_2881883 chr2R_2880283_2881877 chr2R_2880260_2880282;chr2R_2881884_2881989 99.05 96.49 100.00 99.03 100.00 97.83 97.91 100.00 99.51 97.30 100.00 100.00 97.14 100.00 98.63 100.00 97.56 100.00 96.92 100.00 100.00 96.73 99.07 100.00 100.00 100.00 97.50 99.05 100.00 98.31 98.47 100.00 100.00 99.02 98.55 100.00 96.30 100.00 96.97 99.14 100.00 98.40 96.67 97.94 100.00 98.70 98.95 95.83 100.00 97.89 100.00 100.00 96.23 100.00 98.99 100.00 98.82 97.30 K intron_retention CG7332,I_chrX_18779996_18780073,RI_chrX_18780777_18780878 chrX + chrX_18779996_18780052 chrX_18779995_18779996;chrX_18780052_18780053 chrX_18779896_18779995;chrX_18780053_18780776 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.62 0.00 0.00 0.00 10.00 12.20 0.00 9.09 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor inaE chrX + chrX_13678262_13679739;chrX_13678223_13679739 chrX_13678310_13679739 chrX_13679740_13679985;chrX_13677782_13678222 95.24 92.59 100.00 100.00 100.00 87.50 100.00 95.12 96.92 100.00 92.86 97.73 100.00 96.00 100.00 96.15 94.44 100.00 100.00 97.26 100.00 88.24 93.10 94.29 96.97 100.00 93.55 95.24 95.24 92.86 86.96 100.00 96.88 96.30 92.68 91.89 97.50 96.43 91.43 97.44 92.59 94.34 100.00 94.29 86.67 87.88 100.00 91.43 96.88 100.00 93.22 90.91 94.74 95.83 95.00 92.31 95.24 95.00 K intron_retention Spn,I_chr3L_2511764_2512148 chr3L - chr3L_2508574_2508638 chr3L_2508573_2508574;chr3L_2508638_2508639 chr3L_2508194_2508573;chr3L_2508639_2508865 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 2.94 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 NA 3.33 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 5.26 0.00 NA 0.00 0.00 0.00 NA K cassette Acyp2,CG4699 chr3R + chr3R_11618624_11618763 chr3R_11618624_11618678;chr3R_11618696_11618763 chr3R_11618679_11618695 chr3R_11618415_11618623;chr3R_11618764_11618873 100.00 100.00 92.31 100.00 100.00 100.00 100.00 92.86 100.00 100.00 NA 94.44 NA NA 91.67 100.00 NA 100.00 100.00 95.65 100.00 NA 92.31 100.00 85.71 100.00 100.00 NA 100.00 NA 100.00 100.00 88.89 100.00 90.00 90.91 90.00 100.00 100.00 93.33 90.91 100.00 90.00 75.00 100.00 94.12 92.31 100.00 94.44 100.00 100.00 100.00 100.00 93.33 100.00 92.86 100.00 100.00 K intron_retention I_chr3R_16141663_16144698,CG5077,I_chr3R_16147605_16147670 chr3R + chr3R_16146174_16147197 chr3R_16146173_16146174;chr3R_16147197_16147198 chr3R_16145951_16146173;chr3R_16147198_16147358 9.09 11.55 5.29 5.13 7.94 8.85 8.96 5.22 8.95 10.12 8.77 9.35 11.72 9.09 10.06 14.59 12.92 7.30 7.74 5.77 9.18 6.72 12.06 13.40 13.86 11.45 10.94 14.00 12.80 6.38 7.28 6.90 9.09 9.90 8.56 6.79 13.95 14.10 13.06 7.00 7.76 7.82 10.31 13.81 5.23 6.62 12.61 3.69 10.16 7.89 9.64 12.96 7.12 10.06 7.65 9.52 14.42 2.88 K intron_retention yip2 chr2L + chr2L_9915367_9915624 chr2L_9915366_9915367;chr2L_9915624_9915625 chr2L_9915165_9915366;chr2L_9915625_9915791 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.61 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 K intron_retention Mob2,RI_chr3L_11520443_11527440,CE_chr3L_11520917_11527526,RE_chr3L_11520925_11527489,RI_chr3L_11535932_11545929 chr3L - chr3L_11520443_11534877 chr3L_11520442_11520443;chr3L_11534877_11534878 chr3L_11520343_11520442;chr3L_11534878_11535292 6.67 5.00 3.45 0.00 0.00 8.33 28.57 10.64 10.96 NA 14.29 3.85 NA 7.41 0.00 11.11 9.52 3.57 9.52 7.02 5.88 14.89 4.26 2.86 5.26 8.33 6.25 12.50 0.00 10.53 0.00 10.53 16.67 6.67 12.12 6.45 4.41 2.94 4.00 5.88 0.00 8.22 9.09 0.00 11.76 10.81 3.57 9.68 8.06 10.81 6.90 3.85 0.00 0.00 7.69 0.00 6.25 8.33 K intron_retention bip2,RI_chr4_481674_487126,RI_chr4_483144_483680,RI_chr4_486609_487126 chr4 - chr4_481112_481199 chr4_481111_481112;chr4_481199_481200 chr4_481043_481111;chr4_481200_481282 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.08 100.00 100.00 98.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.15 100.00 100.00 100.00 100.00 100.00 98.44 100.00 100.00 100.00 96.97 100.00 100.00 98.31 100.00 K intron_retention Sep1 chrX + chrX_21229421_21230538 chrX_21229420_21229421;chrX_21230538_21230539 chrX_21229264_21229420;chrX_21230539_21230731 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 3.57 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 3.70 0.00 0.00 0.00 0.00 1.72 1.92 0.00 4.76 0.00 0.00 0.00 0.00 K jcn_only_AD yps,I_chr3L_12115255_12115627,RI_chr3L_12115255_12115645,I_chr3L_12115255_12115669,I_chr3L_12115877_12115936 chr3L - chr3L_12115255_12115775 chr3L_12115255_12115645 chr3L_12115155_12115254;chr3L_12115776_12115867 0.00 0.41 0.00 0.27 0.64 0.00 0.45 0.31 0.20 0.50 0.61 0.00 0.00 0.00 0.39 0.84 0.00 0.00 0.00 0.14 0.00 0.93 0.66 0.00 0.00 0.49 0.00 0.00 0.00 0.00 1.60 0.00 0.00 0.00 0.60 0.90 0.25 0.00 0.76 0.23 0.80 0.20 0.00 0.35 0.77 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.78 0.00 0.00 0.18 K intron_retention CG10289,I_chr3L_6163043_6163216 chr3L - chr3L_6163028_6163216 chr3L_6163027_6163028;chr3L_6163216_6163217 chr3L_6162943_6163027;chr3L_6163217_6163316 0.00 1.37 0.00 3.10 0.00 0.00 2.65 0.80 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 1.32 0.00 0.00 2.04 2.13 0.00 0.00 4.60 0.00 1.48 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.91 0.00 0.00 2.60 0.00 1.82 0.00 0.00 0.00 0.00 0.00 3.19 0.00 1.59 0.00 K intron_retention cryptocephal,noncoding_4181,I_chr2L_21311307_21311752,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21311307_21311752 chr2L_21311306_21311307;chr2L_21311752_21311753 chr2L_21311271_21311306;chr2L_21311753_21311852 98.33 98.33 98.70 94.81 96.55 98.51 97.16 99.15 98.62 100.00 98.08 96.55 98.65 96.49 98.81 94.97 98.41 98.75 96.30 100.00 94.64 98.08 93.85 100.00 97.96 98.25 98.53 99.12 95.21 98.73 96.52 98.84 97.32 96.49 98.11 97.40 98.68 97.87 98.48 97.67 98.77 98.57 98.00 93.88 97.27 96.58 98.53 96.19 98.44 98.89 98.39 95.31 100.00 100.00 98.82 95.40 100.00 98.67 N jcn_only_AA Hrb98DE,RI_chr3R_24429041_24431183 chr3R + chr3R_24429421_24429782;chr3R_24429421_24431183 chr3R_24429421_24429573 chr3R_24429330_24429420;chr3R_24431184_24431283 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14446 chrX + chrX_6122437_6122511 chrX_6122436_6122437;chrX_6122511_6122512 chrX_6122305_6122436;chrX_6122512_6122912 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA 9.52 NA NA NA NA NA NA 13.33 NA NA NA NA NA 0.00 NA NA NA K cassette CG5174,F_chr2R_14309059_14311473 chr2R + chr2R_14312172_14312844;chr2R_14311992_14312844 chr2R_14312172_14312376,chr2R_14311992_14312376;chr2R_14312582_14312844 chr2R_14312377_14312581 chr2R_14311831_14311991;chr2R_14312845_14312913 100.00 100.00 99.11 100.00 100.00 98.99 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.84 98.80 100.00 100.00 100.00 100.00 98.44 100.00 98.65 100.00 100.00 100.00 98.86 100.00 100.00 100.00 100.00 100.00 100.00 99.22 100.00 100.00 100.00 100.00 98.80 100.00 99.01 100.00 100.00 100.00 100.00 100.00 100.00 98.86 100.00 100.00 99.26 100.00 K jcn_only_AA bol,I_chr3L_9095908_9105733,RI_chr3L_9117011_9118271 chr3L - chr3L_9100796_9101055 chr3L_9100811_9101055 chr3L_9101056_9101135;chr3L_9100749_9100795 100.00 NA NA NA NA NA NA NA 90.48 NA NA 100.00 NA NA NA NA NA NA NA 96.43 NA 100.00 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 92.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention F_chr3R_7396835_7396923,wkd chr3R + chr3R_7407562_7409035 chr3R_7407561_7407562;chr3R_7409035_7409036 chr3R_7407293_7407561;chr3R_7409036_7409278 4.55 0.00 0.00 7.14 0.00 4.55 6.78 7.41 6.94 22.22 15.00 2.70 0.00 0.00 0.00 0.00 8.00 4.35 0.00 6.45 0.00 14.81 5.00 4.08 6.25 4.35 7.14 5.88 12.77 9.38 4.55 9.38 10.00 3.08 6.90 17.24 5.00 0.00 7.89 5.56 11.11 4.94 3.45 2.04 4.17 6.82 6.06 3.12 3.77 3.45 2.04 0.00 0.00 0.00 3.77 6.90 0.00 4.17 K jcn_only_AA CG7766,I_chrX_8993495_8994545,I_chrX_8991338_8991387 chrX - chrX_8991547_8991788 chrX_8991553_8991788 chrX_8991789_8992040;chrX_8991388_8991546 82.93 83.93 79.63 84.13 80.49 82.93 81.58 88.33 82.11 74.29 90.48 86.79 67.44 74.36 81.82 81.13 83.72 82.98 87.18 79.49 87.23 82.12 75.22 85.19 82.61 72.13 83.54 87.23 76.56 78.95 86.49 76.92 90.00 81.43 85.29 77.53 83.11 89.29 85.85 80.17 82.26 85.15 89.74 80.00 85.88 76.92 84.93 93.42 84.95 77.53 81.63 77.19 90.20 83.08 79.17 83.33 77.78 86.02 K intron_retention CG11739,REI_chr3R_205547_205633,RI_chr3R_205772_205830,I_chr3R_207254_207600 chr3R + chr3R_205547_205649 chr3R_205546_205547;chr3R_205649_205650 chr3R_205447_205546;chr3R_205650_205733 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.65 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.69 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 1.34 N multi_cassette CG1161,RI_chr3R_1181273_1181459,I_chr3R_1182079_1182146 chr3R + chr3R_1181273_1182146 chr3R_1181273_1181515;chr3R_1181665_1181724;chr3R_1181851_1182146 chr3R_1181516_1181664;chr3R_1181725_1181850 chr3R_1181173_1181272;chr3R_1182147_1182246 100.00 100.00 100.00 100.00 100.00 100.00 95.12 100.00 97.23 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.09 100.00 96.28 94.67 95.27 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.43 100.00 100.00 100.00 100.00 100.00 100.00 96.52 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.04 100.00 100.00 100.00 100.00 100.00 K intron_retention I_chr2R_19922148_19922210,sei,I_chr2R_19939693_19939776,I_chr2R_19946657_19946733,I_chr2R_19948517_19948682 chr2R + chr2R_19940112_19940177 chr2R_19940111_19940112;chr2R_19940177_19940178 chr2R_19940053_19940111;chr2R_19940178_19940252 28.18 41.67 NA 27.78 NA NA 38.89 47.06 30.43 NA 41.67 21.05 NA NA NA 43.75 NA 42.86 35.71 48.28 NA NA 33.33 15.00 NA NA NA NA NA 25.00 25.00 11.11 14.29 37.50 NA 25.00 37.50 14.29 22.73 17.39 23.53 40.00 NA NA 22.73 20.00 22.22 13.04 39.13 30.00 28.57 NA 30.77 35.71 25.00 29.41 14.81 24.14 K multi_cassette R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8088454_8105691 chr2L_8088454_8088664;chr2L_8088716_8089393;chr2L_8089737_8105691 chr2L_8088665_8088715;chr2L_8089394_8089736 chr2L_8088448_8088453;chr2L_8105692_8105782 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 95.45 100.00 100.00 93.33 90.91 100.00 85.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 100.00 100.00 75.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 83.33 83.33 92.31 100.00 100.00 100.00 100.00 75.00 100.00 100.00 100.00 100.00 K alternative_donor Ssadh,RI_chr3R_21451890_21451963,I_chr3R_21452371_21452464,I_chr3R_21452407_21452453 chr3R - chr3R_21452368_21452464 chr3R_21452368_21452453 chr3R_21452307_21452367;chr3R_21452465_21452553 95.45 88.89 NA NA NA NA 100.00 87.50 90.00 NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA 100.00 80.00 87.50 NA NA 88.89 100.00 NA 100.00 NA NA NA 100.00 NA NA 100.00 87.50 88.89 87.50 NA 100.00 NA NA NA 100.00 88.89 NA 90.91 NA 100.00 NA NA 88.89 77.78 NA 100.00 NA K intron_retention Gs1l,I_chr2L_4456517_4456723 chr2L - chr2L_4456333_4456385 chr2L_4456332_4456333;chr2L_4456385_4456386 chr2L_4456114_4456332;chr2L_4456386_4456516 6.93 5.13 8.82 15.62 8.82 8.33 5.22 7.53 6.54 10.00 3.12 4.44 2.70 3.39 10.20 17.65 3.12 5.45 8.11 9.38 2.17 10.00 4.49 5.94 6.25 4.48 20.25 24.00 11.34 12.07 6.60 8.82 9.43 7.06 0.00 23.91 5.51 3.61 4.51 6.57 9.57 5.43 8.89 6.98 5.88 6.80 6.85 12.87 7.37 8.93 6.74 10.00 12.20 5.00 6.12 6.93 5.26 9.86 K intron_retention CG10249,I_chr2R_10790537_10790639 chr2R - chr2R_10793459_10794529 chr2R_10793458_10793459;chr2R_10794529_10794530 chr2R_10793019_10793458;chr2R_10794530_10794722 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 14.29 NA NA NA NA NA NA NA NA 0.00 K jcn_only_AD I_chrX_15223901_15223968,HDAC6,I_chrX_15232958_15233665 chrX + chrX_15232738_15233659;chrX_15232699_15233659 chrX_15232958_15233659 chrX_15233660_15234340;chrX_15232108_15232698 72.92 86.67 82.61 34.48 84.38 78.26 NA 56.41 75.47 NA NA 83.33 NA 71.43 63.64 NA 71.43 66.67 NA 86.11 85.00 65.38 75.51 81.40 75.76 50.00 73.53 52.17 76.67 65.62 92.68 80.00 63.83 65.79 81.48 65.38 72.41 82.69 71.64 64.41 69.70 78.43 70.00 67.74 84.62 65.38 73.81 77.78 72.92 56.67 75.00 85.00 72.55 72.41 67.74 88.57 80.00 67.86 K intron_retention Shawn_Tyler,Shawn chrX + chrX_19508177_19508245 chrX_19508176_19508177;chrX_19508245_19508246 chrX_19507946_19508176;chrX_19508246_19508415 3.70 7.14 3.70 9.09 NA 5.56 3.45 11.11 2.94 0.00 NA 0.00 NA 7.14 0.00 0.00 NA 4.35 0.00 5.77 0.00 15.00 11.54 0.00 5.00 6.67 0.00 10.53 8.06 0.00 0.00 0.00 1.94 0.00 2.94 19.51 14.58 9.09 6.56 3.45 7.02 2.00 0.00 7.14 3.70 5.66 0.00 2.50 3.45 10.00 4.65 16.67 4.76 6.25 0.00 0.00 2.70 0.00 K intron_retention CG8552,I_chr2L_8140779_8156516 chr2L - chr2L_8134513_8134572 chr2L_8134512_8134513;chr2L_8134572_8134573 chr2L_8134264_8134512;chr2L_8134573_8134773 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 98.25 100.00 97.56 100.00 100.00 100.00 100.00 100.00 K cassette lqf,I_chr3L_7522287_7522807 chr3L + chr3L_7528745_7530075 chr3L_7528745_7528983;chr3L_7529536_7530075 chr3L_7528984_7529535 chr3L_7528643_7528744;chr3L_7530076_7530479 6.52 5.97 7.69 6.09 4.26 1.85 9.41 7.78 6.99 9.68 10.00 13.16 6.52 7.55 6.35 8.82 12.24 7.84 5.26 14.88 12.50 2.44 7.00 4.88 7.14 6.49 5.68 5.48 6.85 5.71 13.33 4.55 6.25 9.30 9.30 15.25 7.95 5.48 4.65 6.00 3.70 6.15 6.38 8.08 4.84 9.72 6.02 6.45 6.90 2.74 5.75 3.64 13.16 7.14 5.95 6.78 6.10 11.11 N jcn_only_AD CG14253,E_chr3R_22806425_22807258 chr3R + chr3R_22806824_22807254;chr3R_22806425_22807254;chr3R_22806454_22807254 chr3R_22806725_22807254 chr3R_22807255_22807473;chr3R_22806325_22806424 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 5.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3R_6694098_6694160,Fdh chr3R - chr3R_6697908_6697976 chr3R_6697907_6697908;chr3R_6697976_6697977 chr3R_6697818_6697907;chr3R_6697977_6698058 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 1.50 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 1.19 21.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpS18,CG8908,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16152664_16152727 chr2R_16152663_16152664;chr2R_16152727_16152728 chr2R_16151998_16152663;chr2R_16152728_16152858 65.34 NA NA NA NA NA 29.41 NA 66.67 NA NA 63.64 28.57 NA NA 64.00 NA NA NA 61.54 NA 72.22 76.19 NA NA NA NA NA 53.85 NA 73.68 NA 66.67 NA NA 88.89 NA NA NA 57.14 NA 66.67 NA 63.64 NA NA NA 70.00 46.67 NA 72.73 NA NA NA NA NA NA NA K intron_retention kuz,E_chr2L_13550294_13551106,CE_chr2L_13558833_13594255,F_chr2L_13635998_13637287,RI_chr2L_13636519_13636577,I_chr2L_13636762_13637287 chr2L + chr2L_13636214_13636383 chr2L_13636213_13636214;chr2L_13636383_13636384 chr2L_13636100_13636213;chr2L_13636384_13636393 16.28 10.00 12.50 5.32 NA NA 15.56 36.84 21.15 0.00 12.50 6.70 41.67 21.74 16.67 8.62 21.43 11.11 17.65 10.09 9.52 27.91 19.51 13.16 6.45 12.50 18.52 17.65 18.00 26.87 20.83 12.50 8.25 17.39 14.71 4.60 6.82 17.39 16.67 16.28 2.86 20.69 19.05 22.22 3.03 15.00 NA 23.08 19.61 NA 27.27 7.14 5.00 NA 23.08 NA 5.26 16.67 K intron_retention KrT95D,I_chr3R_19825840_19825904 chr3R - chr3R_19824491_19824551 chr3R_19824490_19824491;chr3R_19824551_19824552 chr3R_19823890_19824490;chr3R_19824552_19824668 0.48 1.14 0.00 2.26 0.00 1.75 0.92 0.61 0.36 1.43 0.00 1.08 0.00 0.00 0.75 0.59 0.00 0.88 1.22 0.52 0.00 1.66 0.37 0.40 0.40 0.00 2.33 6.38 2.38 0.00 1.53 0.00 1.11 0.00 0.44 1.01 0.00 0.00 0.96 0.60 1.34 0.76 0.00 0.00 0.00 0.00 0.48 0.00 1.68 0.49 1.17 0.00 0.00 0.00 0.62 0.00 0.00 0.82 K alternative_donor GlcAT-P,I_chr3L_11172482_11172633 chr3L - chr3L_11172482_11172633 chr3L_11172482_11172629 chr3L_11172382_11172481;chr3L_11172634_11172733 98.28 95.83 96.23 100.00 98.00 100.00 95.74 100.00 100.00 100.00 98.36 100.00 100.00 100.00 98.77 100.00 100.00 100.00 100.00 99.16 98.21 97.87 97.67 98.00 100.00 98.15 98.08 97.67 100.00 95.65 92.98 96.97 98.21 100.00 96.67 100.00 98.81 98.11 98.39 97.10 100.00 99.17 98.00 97.14 96.55 100.00 96.30 98.41 98.32 100.00 97.92 96.43 97.73 95.65 98.53 97.50 98.28 98.25 K intron_retention CG9603,I_chr3R_4165812_4166062 chr3R - chr3R_4165812_4166149 chr3R_4165811_4165812;chr3R_4166149_4166150 chr3R_4165712_4165811;chr3R_4166150_4166162 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.21 0.49 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.22 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 1.03 0.71 0.00 0.00 0.18 0.71 0.13 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.20 0.00 0.00 0.00 K alternative_acceptor ird5,I_chr3R_11874883_11874942,CG10185 chr3R - chr3R_11874534_11874942 chr3R_11874883_11874942 chr3R_11874943_11875042;chr3R_11873964_11874533 6.06 3.45 5.26 17.14 0.00 3.23 15.00 2.56 10.20 0.00 0.00 6.67 14.29 4.76 2.17 6.06 3.45 6.67 9.09 5.77 3.57 21.43 3.92 3.03 8.33 9.09 6.90 0.00 8.33 9.52 2.94 10.53 3.45 3.77 8.33 8.70 7.14 3.33 3.12 3.92 9.09 5.80 0.00 6.25 9.09 6.67 4.76 6.38 6.45 5.00 6.67 10.34 5.56 0.00 8.82 9.68 0.00 13.04 K jcn_only_AA Spc105R chr3L + chr3L_20798960_20799024 chr3L_20798960_20799021 chr3L_20794645_20798959;chr3L_20799025_20799474 100.00 95.83 100.00 97.30 NA NA 100.00 96.30 100.00 NA NA 100.00 NA NA 95.65 96.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 NA NA 100.00 NA NA 100.00 97.83 100.00 100.00 NA NA NA 100.00 96.08 100.00 100.00 NA 100.00 98.31 97.83 100.00 100.00 100.00 100.00 NA NA 95.00 100.00 96.00 95.45 NA 97.89 K intron_retention CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2814327_2816013 chr2R_2814326_2814327;chr2R_2816013_2816014 chr2R_2814227_2814326;chr2R_2816014_2816113 7.63 6.25 10.81 6.82 17.39 3.57 16.67 6.67 7.50 9.76 16.67 10.77 12.50 15.15 10.53 13.79 5.71 8.33 6.67 7.63 10.53 12.20 10.00 10.00 17.50 10.53 11.48 15.00 8.16 9.20 6.67 5.26 7.04 9.26 6.35 9.30 6.56 3.28 10.53 7.56 8.96 3.90 13.04 6.06 4.30 6.67 4.92 8.33 7.25 7.14 7.04 7.55 6.90 4.62 6.45 10.00 5.00 4.17 K intron_retention CG1674,I_chr4_264634_265805 chr4 + chr4_266168_266232 chr4_266167_266168;chr4_266232_266233 chr4_266030_266167;chr4_266233_266266 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.13 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention l(1)G0334 chrX + chrX_4598551_4598620 chrX_4598550_4598551;chrX_4598620_4598621 chrX_4598228_4598550;chrX_4598621_4599146 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention CG42574,I_chr3R_618802_618939,I_chr3R_621543_625413,I_chr3R_621546_625413 chr3R - chr3R_620787_622210 chr3R_620786_620787;chr3R_622210_622211 chr3R_618940_620786;chr3R_622211_622332 48.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA 47.37 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG33558,I_chr2R_2813804_2817753,I_chr2R_2814327_2817753,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2816779_2817354;chr2R_2816779_2817327 chr2R_2816779_2817459 chr2R_2816679_2816778;chr2R_2817460_2817510 0.00 2.27 0.00 0.00 0.00 6.25 0.00 3.70 1.54 2.70 0.00 1.67 0.00 0.00 2.86 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 2.08 8.33 2.86 0.00 0.00 3.23 1.56 0.00 2.33 2.22 1.80 0.00 0.00 0.00 2.70 1.67 0.00 2.17 0.00 1.52 2.70 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 K alternative_donor CSN8,I_chr2L_8365282_8365388,I_chr2L_8367210_8367311 chr2L + chr2L_8365282_8365388 chr2L_8365329_8365388 chr2L_8365389_8365488;chr2L_8365182_8365281 100.00 100.00 97.56 98.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.55 100.00 100.00 100.00 98.39 100.00 100.00 97.78 97.83 100.00 100.00 98.08 98.18 100.00 87.10 100.00 100.00 96.15 100.00 97.62 100.00 97.73 100.00 100.00 96.00 98.15 100.00 100.00 100.00 97.06 100.00 100.00 98.08 100.00 100.00 100.00 96.97 98.57 100.00 100.00 97.37 96.77 100.00 100.00 98.33 98.80 98.57 K alternative_donor stck,I_chr3R_4184313_4184380,I_chr3R_4184660_4184730 chr3R + chr3R_4182496_4184192;chr3R_4182818_4184192 chr3R_4183179_4184192 chr3R_4184193_4184312;chr3R_4182427_4182495 50.00 42.86 55.56 50.00 33.33 50.00 38.46 50.00 47.83 33.33 42.86 56.25 40.00 50.00 37.50 50.00 28.57 66.67 62.50 66.67 50.00 62.50 60.00 44.44 50.00 44.44 57.14 60.00 66.67 66.67 66.67 66.67 75.00 46.67 50.00 75.00 40.00 33.33 44.44 62.50 75.00 42.11 50.00 66.67 80.00 42.86 50.00 75.00 41.18 40.00 55.56 28.57 60.00 60.00 36.36 40.00 40.00 66.67 K intron_retention CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157014_157316,RI_chr4_157014_157504,I_chr4_157794_157864 chr4 + chr4_156998_157316 chr4_156997_156998;chr4_157316_157317 chr4_156984_156997;chr4_157317_157403 88.89 NA NA 68.75 NA NA 92.86 88.24 77.27 NA NA 100.00 NA NA NA 90.91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA 81.25 NA NA NA NA NA NA 91.67 NA NA NA NA NA NA NA NA NA K jcn_only_AD nes chr3L - chr3L_19253331_19253632;chr3L_19253331_19253636;chr3L_19253331_19253609;chr3L_19253331_19253676;chr3L_19253331_19253648;chr3L_19253331_19253745 chr3L_19253331_19253764 chr3L_19253215_19253330;chr3L_19253765_19253779 0.00 0.00 0.00 2.33 0.00 0.00 1.82 1.92 0.00 0.00 NA 0.00 0.00 0.00 0.00 2.08 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 2.67 NA 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 K alternative_donor CG13771 chr2L - chr2L_6663068_6663123;chr2L_6663068_6663131 chr2L_6663068_6663127 chr2L_6662854_6663067;chr2L_6663132_6663374 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA 22.22 NA NA NA NA NA 12.50 NA 13.33 NA NA NA NA NA NA NA NA NA 33.33 K alternative_donor Chc,RI_chrX_15728405_15729273,I_chrX_15728405_15729401,I_chrX_15728946_15729357 chrX - chrX_15728405_15729260;chrX_15728405_15729370;chrX_15728405_15729476;chrX_15728405_15729357 chrX_15728405_15729319 chrX_15728305_15728404;chrX_15729477_15729501 9.45 10.87 10.61 12.50 13.79 12.50 9.49 8.07 8.86 12.50 8.57 6.15 7.59 10.39 8.33 8.93 6.06 10.87 10.75 9.45 10.87 6.00 9.23 7.32 10.00 9.84 11.90 9.38 16.67 5.88 7.78 15.38 7.41 8.44 11.11 15.56 7.69 15.79 3.57 12.90 0.00 8.70 7.04 10.00 0.00 8.70 3.85 12.12 8.02 15.79 14.29 12.50 16.67 21.43 8.00 8.70 4.35 13.33 K jcn_only_AA Fps85D,I_chr3R_5194729_5194776,I_chr3R_5216796_5218450 chr3R - chr3R_5216796_5218462 chr3R_5216814_5218462 chr3R_5218463_5218550;chr3R_5216696_5216795 2.54 2.56 2.41 0.00 1.54 2.53 1.12 1.87 3.40 0.00 2.33 0.00 1.54 7.41 3.70 2.47 7.32 2.63 1.19 3.89 4.62 4.27 3.87 0.91 1.39 0.00 3.41 6.45 1.06 1.28 0.00 0.00 3.75 4.64 1.61 5.88 1.37 4.76 2.54 3.45 0.00 1.38 3.03 3.38 4.26 3.28 0.00 3.08 5.06 2.67 4.17 4.44 0.00 1.85 4.17 3.12 0.00 0.00 K intron_retention MED14,CG12030 chr3L + chr3L_596632_596687 chr3L_596631_596632;chr3L_596687_596688 chr3L_596327_596631;chr3L_596688_599242 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.98 5.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K alternative_donor plx chr3R + chr3R_1528494_1532905 chr3R_1528650_1532905 chr3R_1532906_1533663;chr3R_1528447_1528493 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention cnn,I_chr2R_9333096_9336723,I_chr2R_9333096_9336812,RI_chr2R_9334834_9336719,I_chr2R_9347031_9370659 chr2R - chr2R_9334834_9336719 chr2R_9334833_9334834;chr2R_9336719_9336720 chr2R_9334744_9334833;chr2R_9336720_9336819 90.62 92.31 100.00 80.00 NA NA 90.48 90.00 90.62 100.00 NA 81.82 87.50 NA 87.50 94.74 NA NA 91.67 84.62 77.78 83.33 95.45 90.91 90.00 88.89 91.67 91.67 95.24 90.91 100.00 100.00 91.30 90.91 NA 75.00 93.75 NA 100.00 91.30 88.89 90.00 NA 89.47 NA 84.62 NA 95.65 90.00 87.50 100.00 NA NA NA 90.00 NA NA 75.00 K intron_retention CG17838 chr3R + chr3R_16605060_16606429 chr3R_16605059_16605060;chr3R_16606429_16606430 chr3R_16604991_16605059;chr3R_16606430_16606549 100.00 NA NA 93.75 NA NA 100.00 100.00 95.24 NA NA 94.12 100.00 NA NA 100.00 100.00 NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA K cassette ens,I_chr3L_4130719_4131120 chr3L - chr3L_4132204_4133768;chr3L_4132213_4133768 chr3L_4132204_4133548,chr3L_4132213_4133548;chr3L_4133657_4133768 chr3L_4133549_4133656 chr3L_4131956_4132203;chr3L_4133769_4133822 2.34 2.56 3.12 0.00 2.50 2.13 1.47 3.03 1.76 1.92 1.43 2.34 3.23 2.13 4.17 3.51 1.75 2.70 1.75 2.05 3.66 4.83 1.89 3.03 4.55 3.66 1.64 2.40 5.10 1.71 1.27 5.71 1.15 2.27 4.44 1.94 1.08 1.16 2.63 2.34 3.77 2.58 3.92 2.60 3.28 2.08 0.94 1.98 3.67 1.47 2.25 5.88 0.00 1.41 2.35 3.23 0.00 1.54 K alternative_donor I_chr3R_8822346_8822403,CG7518 chr3R + chr3R_8827698_8828350 chr3R_8828286_8828350 chr3R_8828351_8828431;chr3R_8827671_8827697 0.00 0.00 0.00 4.88 0.00 NA 7.41 2.63 2.04 NA 11.11 4.35 10.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 NA 8.33 0.00 4.35 NA 0.00 3.33 12.50 NA NA 4.76 0.00 0.00 6.67 NA NA 0.00 0.00 0.00 2.63 NA 0.00 0.00 2.78 NA NA 0.00 NA 2.94 0.00 0.00 0.00 NA NA 0.00 0.00 6.25 9.09 K cassette CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2439831_2459590 chr3L_2439831_2444498;chr3L_2446102_2459590 chr3L_2444499_2446101 chr3L_2439731_2439830;chr3L_2459591_2459690 100.00 98.73 98.53 99.17 100.00 100.00 100.00 100.00 99.30 98.77 100.00 99.15 100.00 100.00 100.00 100.00 100.00 98.41 98.41 99.23 100.00 98.49 100.00 99.21 100.00 100.00 99.25 100.00 99.26 99.10 100.00 98.39 99.29 100.00 98.81 100.00 99.39 98.94 100.00 99.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.07 99.15 99.23 100.00 98.63 100.00 98.48 98.73 98.88 100.00 100.00 K multi_cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27761114_27762991,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27707594_27801169 chr3R_27707594_27757793;chr3R_27758337_27784756;chr3R_27784850_27795477;chr3R_27795508_27798223;chr3R_27798276_27801169 chr3R_27757794_27758336;chr3R_27784757_27784849;chr3R_27795478_27795507;chr3R_27798224_27798275 chr3R_27707494_27707593;chr3R_27801170_27801219 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 66.67 50.00 NA 100.00 100.00 NA NA 100.00 75.00 NA 66.67 NA 100.00 100.00 66.67 NA NA 50.00 100.00 NA NA 66.67 100.00 NA NA 100.00 100.00 100.00 100.00 NA 66.67 NA 66.67 100.00 NA NA 100.00 60.00 100.00 100.00 NA 100.00 NA 66.67 NA 100.00 66.67 K alternative_donor Srp68 chr3L + chr3L_8968321_8968424 chr3L_8968355_8968424 chr3L_8968425_8968774;chr3L_8968194_8968320 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.79 K jcn_only_AD MED22,I_chrX_822500_822582,noncoding_21259,I_chrX_829743_831973 chrX + chrX_822500_822582 chrX_822519_822582 chrX_822583_822649;chrX_822435_822499 100.00 100.00 97.37 100.00 97.92 100.00 100.00 100.00 98.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 NA 100.00 100.00 100.00 97.56 100.00 100.00 100.00 98.04 100.00 100.00 88.57 100.00 100.00 100.00 98.61 98.25 100.00 100.00 100.00 98.57 100.00 100.00 97.22 100.00 100.00 100.00 98.36 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG8031 chr3R - chr3R_8835038_8835103 chr3R_8835037_8835038;chr3R_8835103_8835104 chr3R_8834926_8835037;chr3R_8835104_8835216 0.00 0.00 0.00 1.82 0.00 0.00 0.00 1.48 1.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 4.05 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor scrib,I_chr3R_22362324_22363015,I_chr3R_22381374_22399575,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22362244_22363092;chr3R_22362120_22363092;chr3R_22362315_22363092;chr3R_22362254_22363092;chr3R_22362224_22363092;chr3R_22362324_22363092 chr3R_22362142_22363092 chr3R_22363093_22363115;chr3R_22362112_22362119 4.76 3.57 5.77 6.76 10.00 7.14 6.15 4.23 6.36 0.00 7.50 5.56 5.41 7.14 4.76 1.59 7.89 5.41 0.00 5.43 6.98 2.59 1.96 5.56 10.00 5.88 0.00 5.26 5.66 1.27 4.76 0.00 6.06 2.82 2.38 4.55 7.89 9.09 7.69 1.85 4.88 2.53 0.00 2.63 5.56 7.32 4.55 3.30 7.25 0.00 2.17 0.00 0.00 0.00 9.80 0.00 0.00 4.48 K intron_retention CG34409,CG12948 chr3R - chr3R_5569737_5570402 chr3R_5569736_5569737;chr3R_5570402_5570403 chr3R_5569634_5569736;chr3R_5570403_5571167 5.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA RhoGAP5A,C_chrX_5514320_5515557 chrX - chrX_5511062_5511153 chrX_5511090_5511153 chrX_5511154_5511259;chrX_5510684_5511061 100.00 98.11 100.00 100.00 100.00 97.14 100.00 100.00 97.10 100.00 100.00 100.00 NA NA 100.00 92.31 100.00 100.00 100.00 98.65 100.00 97.83 98.99 98.25 96.77 100.00 98.72 98.15 97.83 98.51 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.81 100.00 100.00 100.00 98.18 98.04 99.00 96.59 100.00 100.00 100.00 98.61 100.00 100.00 97.85 97.14 98.94 98.15 98.55 K intron_retention I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17183481_17200781,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,I_chr3R_17190098_17190207,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,I_chr3R_17197790_17197863,RI_chr3R_17198778_17199052,RI_chr3R_17198803_17199019,RI_chr3R_17198803_17199052 chr3R - chr3R_17190098_17200781 chr3R_17190097_17190098;chr3R_17200781_17200782 chr3R_17189998_17190097;chr3R_17200782_17200881 21.50 NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA 26.32 NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA 14.29 16.67 NA 41.67 NA NA NA NA 30.77 NA NA NA 35.71 NA NA NA NA NA NA NA N jcn_only_AD Lag1,RI_chrX_6153758_6153930,I_chrX_6153758_6155077,RI_chrX_6153758_6161036,I_chrX_6160907_6161036 chrX - chrX_6153758_6155077;chrX_6153758_6154631;chrX_6153758_6153930;chrX_6153758_6161036;chrX_6153758_6154358;chrX_6153758_6160439 chrX_6153758_6154193 chrX_6153658_6153757;chrX_6161037_6161136 2.18 0.00 3.17 2.29 0.00 3.23 3.63 2.18 1.63 3.00 1.89 3.74 0.00 0.00 3.25 2.06 0.00 3.42 0.00 1.66 2.63 4.95 1.54 1.41 0.00 0.00 0.00 3.30 5.54 1.93 2.76 0.00 6.30 2.28 0.00 2.48 2.20 0.00 2.31 1.97 0.00 3.10 0.00 0.00 4.93 4.30 0.00 0.00 2.32 3.18 2.62 3.15 0.00 2.97 2.26 0.00 2.21 0.00 K alternative_donor drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389597_9390195;chr2R_9389597_9390151;chr2R_9389597_9389907;chr2R_9389597_9389940;chr2R_9389597_9390293;chr2R_9389597_9390264;chr2R_9389597_9389753;chr2R_9389597_9389757 chr2R_9389597_9389751 chr2R_9389497_9389596;chr2R_9390294_9390295 5.71 5.26 4.88 5.08 4.17 6.67 5.56 6.45 3.61 6.67 3.12 5.00 6.67 7.41 5.71 7.69 3.85 2.86 5.13 1.96 3.23 13.04 8.57 8.33 4.35 2.70 9.52 13.33 6.25 11.11 5.00 6.67 8.33 9.84 5.56 3.85 4.76 7.69 8.70 7.89 11.11 4.11 5.26 5.56 7.14 11.11 5.26 12.00 7.58 6.25 4.76 8.33 4.76 0.00 5.13 5.88 3.12 8.33 K alternative_acceptor shep,RI_chr3L_5163541_5194164,I_chr3L_5177084_5177314,I_chr3L_5193467_5212049 chr3L - chr3L_5155644_5156066;chr3L_5155711_5156066 chr3L_5155732_5156066 chr3L_5156067_5156229;chr3L_5155556_5155643 4.03 4.50 3.95 10.04 4.42 3.95 3.91 3.70 4.88 4.20 2.82 3.62 7.63 3.52 3.49 3.64 5.43 3.45 4.14 4.08 4.08 3.48 5.52 5.88 6.86 6.35 1.71 1.83 5.32 5.20 3.98 4.73 3.22 6.08 4.03 7.51 4.40 2.91 2.31 3.11 6.56 3.75 2.50 2.25 3.39 3.24 4.07 3.90 3.91 5.48 5.26 3.80 4.46 1.41 4.08 5.56 5.88 2.78 K jcn_only_AA Pitslre,I_chr3L_20764965_20765781,I_chr3L_20764965_20766192,I_chr3L_20764965_20766212,I_chr3L_20766064_20766192,I_chr3L_20766064_20766215,RI_chr3L_20766064_20766893,I_chr3L_20766311_20766664,I_chr3L_20766311_20766893,I_chr3L_20766773_20766893 chr3L + chr3L_20764965_20765704;chr3L_20764965_20766215 chr3L_20764965_20766893 chr3L_20764896_20764964;chr3L_20766894_20766993 64.18 71.88 NA NA NA NA NA 77.27 50.91 82.14 NA 55.88 NA NA NA 65.22 NA NA NA 67.65 NA 48.65 51.52 71.19 59.52 NA 61.70 75.64 61.36 69.23 22.58 51.85 62.00 NA 73.53 78.79 70.73 64.18 60.29 64.10 63.64 73.81 NA 46.81 71.88 75.00 73.53 83.33 78.12 71.79 59.15 51.35 71.88 62.96 50.00 57.14 71.43 59.09 K jcn_only_AD CG12576,RI_chrX_21878289_21882347,I_chrX_21882735_21882809,I_chrX_21882735_21883407,I_chrX_21882735_21883467,I_chrX_21882735_21883620,I_chrX_21882735_21883714 chrX - chrX_21882735_21883714;chrX_21882735_21883467;chrX_21882735_21883750 chrX_21882735_21882809 chrX_21882635_21882734;chrX_21883751_21883814 0.78 3.41 1.45 1.32 0.00 3.08 1.03 2.20 0.89 0.00 0.00 0.77 0.00 1.14 1.23 1.59 0.00 6.85 1.01 0.84 2.47 0.78 1.72 1.52 0.00 2.78 0.00 0.00 0.00 0.00 3.23 1.49 0.00 0.68 1.14 0.00 0.00 0.00 2.47 0.00 0.00 0.72 1.41 1.68 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 2.27 2.04 1.30 2.99 0.00 K intron_retention Arf79F,I_chr3L_22863166_22863946,I_chr3L_22863166_22864419,RI_chr3L_22863251_22863389,RI_chr3L_22863251_22863952,I_chr3L_22863251_22864009,I_chr3L_22863251_22864188,I_chr3L_22863251_22864501,I_chr3L_22863251_22864629,RI_chr3L_22863251_22864763,I_chr3L_22863251_22864866,RI_chr3L_22871119_22871250,I_chr3L_22871351_22871733 chr3L - chr3L_22863251_22863952 chr3L_22863250_22863251;chr3L_22863952_22863953 chr3L_22863151_22863250;chr3L_22863953_22864046 60.00 NA 77.78 60.00 NA NA NA 77.78 50.00 NA NA 50.00 NA NA 77.78 NA NA NA 63.64 NA NA NA 41.67 NA NA NA 60.00 NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA 27.27 NA NA NA NA 46.15 NA NA NA 58.33 NA NA NA NA NA NA NA N alternative_donor RpS27A,Ip259 chr2L + chr2L_10408387_10408738 chr2L_10408622_10408738 chr2L_10408739_10409132;chr2L_10408376_10408386 10.68 10.68 5.13 10.94 7.14 5.06 12.77 5.13 6.90 41.67 3.08 3.82 9.36 6.02 3.04 12.18 4.79 2.53 5.32 4.84 4.50 14.71 28.79 11.61 7.34 1.42 40.00 57.89 22.47 34.62 6.00 9.52 10.87 5.14 52.63 50.00 6.35 16.33 4.92 16.00 35.48 3.64 5.76 15.15 2.84 40.62 15.74 23.81 6.05 16.67 42.22 7.69 16.90 37.04 2.58 11.21 18.40 22.62 K alternative_donor dlg1,I_chrX_11298230_11299306 chrX + chrX_11283731_11284263 chrX_11283815_11284263 chrX_11284264_11284573;chrX_11283729_11283730 88.89 85.71 88.89 95.24 85.71 83.33 100.00 95.24 95.00 NA 87.50 85.71 88.89 90.00 86.67 95.65 92.86 75.00 82.35 88.24 87.50 90.91 87.50 88.89 100.00 73.33 77.78 100.00 94.74 100.00 88.24 85.71 95.65 90.91 88.24 93.75 83.33 NA NA 94.44 90.00 88.89 88.89 90.91 NA 92.31 83.33 97.56 80.00 NA 80.00 88.89 75.00 NA 93.75 NA NA 92.31 K alternative_acceptor Su(var)2-10,I_chr2R_5005955_5006020,RI_chr2R_5006333_5006392 chr2R + chr2R_5005955_5006020 chr2R_5005955_5006010 chr2R_5005855_5005954;chr2R_5006021_5006120 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 95.65 96.15 100.00 100.00 100.00 97.67 100.00 100.00 97.30 97.37 100.00 100.00 100.00 98.46 98.39 96.88 100.00 100.00 100.00 100.00 96.77 96.55 100.00 100.00 100.00 96.55 96.97 98.53 100.00 100.00 98.04 100.00 100.00 96.67 100.00 100.00 100.00 97.73 100.00 100.00 100.00 98.33 100.00 100.00 100.00 100.00 100.00 97.83 100.00 K alternative_donor olf186-F chr2R + chr2R_13731470_13738562 chr2R_13738402_13738562 chr2R_13738563_13738965;chr2R_13731438_13731469 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA UbcD6,RI_chr3R_776749_776832 chr3R - chr3R_776475_776832 chr3R_776749_776832 chr3R_776833_776932;chr3R_776189_776474 82.14 NA NA NA NA NA NA 85.71 91.67 NA NA 70.00 NA NA NA NA NA NA NA NA NA NA 66.67 79.17 NA NA NA NA 65.00 NA NA NA NA 82.14 NA NA NA NA NA 84.00 NA 84.38 NA 57.14 NA 95.24 NA NA 81.82 83.87 68.97 NA NA NA NA NA 90.00 NA K intron_retention babo chr2R + chr2R_4842357_4842463 chr2R_4842356_4842357;chr2R_4842463_4842464 chr2R_4842239_4842356;chr2R_4842464_4842672 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA 100.00 NA NA NA 91.67 100.00 NA NA 91.67 NA NA 100.00 NA NA 100.00 100.00 NA NA NA NA NA NA 92.31 NA NA NA NA NA NA NA 92.86 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG13551,I_chr2R_19265701_19270570 chr2R - chr2R_19270646_19270887 chr2R_19270646_19270842 chr2R_19270612_19270645;chr2R_19270888_19270938 14.66 10.61 13.30 17.55 8.87 11.50 12.73 14.85 8.94 8.89 7.41 13.55 12.78 14.46 11.90 11.44 7.37 15.42 11.74 17.53 8.71 28.12 34.83 34.33 27.59 13.51 36.11 NA 21.88 42.86 12.00 15.28 9.80 8.17 25.71 26.83 24.64 10.47 21.92 43.56 20.00 14.36 9.45 21.74 15.93 25.00 35.71 8.11 8.05 22.35 30.00 25.45 24.77 29.35 10.18 13.29 18.64 8.26 K alternative_donor Imp,I_chrX_10699490_10700695,RI_chrX_10699665_10700501,RI_chrX_10699665_10700695 chrX - chrX_10699503_10700501;chrX_10699503_10700695 chrX_10699503_10700474 chrX_10699299_10699502;chrX_10700696_10700795 10.82 0.00 0.00 10.53 0.00 12.50 15.79 13.79 9.68 NA 0.00 13.04 10.00 6.67 0.00 12.00 0.00 0.00 14.29 11.11 33.33 NA 12.50 NA NA 20.00 20.00 NA NA NA 22.22 NA NA 8.33 NA NA NA NA NA 0.00 NA 6.67 7.69 NA NA NA NA 25.00 13.04 NA NA NA NA NA 14.29 NA NA NA K alternative_donor Eno,EI_chr2L_1727403_1727645,I_chr2L_1728229_1728302 chr2L - chr2L_1728233_1728361 chr2L_1728233_1728302 chr2L_1728054_1728232;chr2L_1728362_1728402 88.89 92.31 88.89 61.11 NA 87.50 76.92 85.71 86.67 NA 62.50 96.15 NA 88.89 100.00 81.82 NA NA 100.00 85.71 NA NA 90.00 84.62 NA NA NA NA 100.00 100.00 93.75 62.50 88.89 95.00 75.00 NA 87.50 100.00 87.50 85.71 NA 93.75 88.89 84.62 90.91 100.00 75.00 88.89 94.44 100.00 100.00 100.00 85.71 88.89 90.00 100.00 80.00 100.00 K alternative_donor I_chrX_16266436_16268958,Fur2,I_chrX_16267221_16268573,I_chrX_16267868_16268958,RI_chrX_16267905_16268958,I_chrX_16270205_16270272,I_chrX_16274795_16274867 chrX + chrX_16267208_16268958 chrX_16267221_16268958 chrX_16268959_16269058;chrX_16267150_16267207 69.10 78.57 62.50 61.11 72.73 63.64 61.54 58.33 60.98 83.33 66.67 66.67 62.50 58.82 61.54 74.07 68.42 70.00 77.78 68.57 76.92 62.86 68.97 75.00 66.67 63.64 57.14 71.43 72.73 77.78 68.75 NA 80.00 60.71 53.33 75.00 68.18 69.23 75.00 88.46 70.00 70.83 87.50 74.07 NA 77.78 87.50 85.71 66.67 63.64 72.00 56.25 75.00 NA 66.67 90.00 54.55 93.33 K jcn_only_AA tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_563461_565293 chr3R_563503_565293 chr3R_565294_565301;chr3R_563195_563460 42.42 NA NA 72.73 NA NA 11.76 NA 46.58 NA NA NA NA NA NA 54.55 NA NA 23.81 22.22 NA NA NA 34.78 NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA 42.42 NA NA NA NA 38.10 NA 43.33 NA NA NA NA NA 71.43 NA 20.00 NA K cassette CG17698 chr3L + chr3L_23741161_23741523 chr3L_23741161_23741239;chr3L_23741393_23741523 chr3L_23741240_23741392 chr3L_23741051_23741160;chr3L_23741524_23741816 100.00 100.00 100.00 97.30 100.00 100.00 97.30 96.30 96.00 100.00 100.00 97.62 100.00 100.00 96.30 97.44 100.00 100.00 100.00 97.62 100.00 100.00 95.00 100.00 100.00 73.68 94.44 NA 85.71 100.00 100.00 100.00 100.00 100.00 100.00 76.92 100.00 90.00 100.00 100.00 100.00 100.00 96.30 100.00 88.89 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Sec61alpha chr2L - chr2L_6480102_6480323 chr2L_6480101_6480102;chr2L_6480323_6480324 chr2L_6480034_6480101;chr2L_6480324_6480490 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette Asator chr4 - chr4_495395_497917 chr4_495395_495585;chr4_495731_497588;chr4_497729_497917 chr4_495586_495730;chr4_497589_497728 chr4_495385_495394;chr4_497918_497940 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD bl,I_chr2R_16481586_16483061,mir-7 chr2R + chr2R_16493357_16493948 chr2R_16493382_16493948 chr2R_16493949_16494359;chr2R_16493187_16493356 2.63 2.21 1.96 2.97 2.10 2.55 1.65 4.76 2.22 2.15 4.63 2.82 0.89 1.18 3.63 4.32 4.23 1.74 4.07 3.40 3.97 1.54 3.49 4.29 2.55 2.70 2.93 4.21 5.76 1.34 2.23 2.92 2.19 3.11 1.23 3.59 4.92 1.73 2.26 0.83 2.63 2.67 2.36 4.17 2.66 2.27 3.94 2.23 2.24 4.25 2.67 1.81 1.94 3.59 2.26 1.69 2.81 1.77 K jcn_only_AD LanB1,RI_chr2L_7820401_7820448,RI_chr2L_7820405_7820461 chr2L + chr2L_7820401_7820461 chr2L_7820405_7820461 chr2L_7820462_7820548;chr2L_7820305_7820400 1.70 1.05 2.67 2.21 1.77 1.86 1.36 1.77 1.25 1.49 1.03 1.56 1.94 1.70 2.87 1.48 1.39 1.72 1.65 1.90 1.55 1.59 2.42 2.82 1.31 2.00 3.04 0.74 2.69 1.01 1.64 1.75 1.39 1.49 1.16 1.64 2.28 2.04 1.37 1.72 1.93 2.06 1.86 1.58 2.36 1.32 2.66 1.20 1.81 2.21 2.09 1.91 1.87 1.60 1.66 1.43 1.54 1.60 K intron_retention CG5706 chr3R - chr3R_20077801_20077866 chr3R_20077800_20077801;chr3R_20077866_20077867 chr3R_20076455_20077800;chr3R_20077867_20078024 0.00 2.86 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 3.85 6.25 0.00 0.00 3.45 9.09 0.00 10.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 2.04 1.69 4.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG15107,I_chr2R_14859289_14859333 chr2R - chr2R_14859289_14859333;chr2R_14859269_14859333 chr2R_14859281_14859333 chr2R_14859334_14859398;chr2R_14859203_14859268 68.05 65.62 61.90 69.35 68.97 65.85 64.15 62.16 70.51 NA 67.74 61.33 70.00 78.38 53.33 74.36 55.26 68.18 68.00 66.19 65.00 67.39 75.47 68.09 66.67 71.64 65.85 75.76 70.00 77.05 63.46 67.78 77.27 65.08 48.78 69.09 69.57 75.86 64.15 76.42 76.25 68.82 72.34 66.67 72.94 60.75 64.58 64.76 73.26 74.07 60.98 55.17 65.00 68.75 73.21 61.11 70.97 74.48 K intron_retention Smg6 chr3R - chr3R_20857217_20857272 chr3R_20857216_20857217;chr3R_20857272_20857273 chr3R_20857081_20857216;chr3R_20857273_20857415 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 6.25 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA K intron_retention deltaCOP,I_chrX_1754047_1754089,I_chrX_1755132_1755191,E_chrX_1755139_1755188,I_chrX_1757755_1757801 chrX - chrX_1755708_1755795 chrX_1755707_1755708;chrX_1755795_1755796 chrX_1755628_1755707;chrX_1755796_1755831 99.50 99.32 99.28 99.30 100.00 99.04 100.00 99.40 99.68 100.00 100.00 97.92 99.10 100.00 99.29 99.42 98.02 100.00 99.11 99.63 99.17 99.08 100.00 99.45 100.00 99.04 99.43 99.31 99.38 100.00 99.25 100.00 99.70 99.42 100.00 100.00 99.57 100.00 99.54 100.00 100.00 99.15 97.67 100.00 99.35 100.00 100.00 98.80 99.06 99.38 100.00 100.00 100.00 100.00 99.29 100.00 99.50 99.48 K intron_retention I_chr2L_100704_100835,CG11377 chr2L + chr2L_103435_103877 chr2L_103434_103435;chr2L_103877_103878 chr2L_103006_103434;chr2L_103878_104103 40.38 25.00 38.10 40.43 31.03 40.91 53.70 34.43 39.02 40.00 24.32 33.87 50.00 60.00 37.50 57.50 56.52 52.94 51.35 40.38 29.17 13.33 44.44 41.46 69.23 61.11 26.83 16.18 47.37 31.58 40.00 25.00 22.22 50.00 41.38 36.84 29.03 33.33 20.00 38.64 26.67 48.15 59.09 55.00 16.67 51.52 42.86 23.33 41.67 29.55 35.48 47.83 55.00 39.29 43.33 42.86 41.18 46.34 K cassette MRP,I_chr2L_12727117_12729243,F_chr2L_12727117_12736035 chr2L + chr2L_12727117_12737958 chr2L_12727117_12728577;chr2L_12728799_12737958 chr2L_12728578_12728798 chr2L_12727017_12727116;chr2L_12737959_12738176 11.54 12.20 16.67 21.43 10.00 26.32 21.67 24.44 24.56 8.33 18.18 42.00 28.00 26.32 16.67 17.65 11.54 15.38 17.86 47.62 20.83 2.05 12.59 9.28 11.94 17.24 9.30 4.11 2.73 8.86 9.26 5.71 4.40 19.15 12.96 10.64 12.90 6.25 7.14 10.28 2.94 25.00 16.00 5.00 4.55 5.00 7.14 6.45 22.50 2.15 7.91 11.90 8.82 3.92 20.00 3.03 5.00 3.45 K jcn_only_AA Graf,RI_chrX_15652351_15654288,RI_chrX_15652363_15654157,RI_chrX_15652363_15654499,RI_chrX_15654228_15654288 chrX - chrX_15652351_15654157 chrX_15652363_15654157 chrX_15654158_15654174;chrX_15652263_15652350 40.91 NA NA 40.91 NA NA 9.52 NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD rin,I_chr3R_9476825_9476895 chr3R + chr3R_9472923_9474639 chr3R_9473269_9474639 chr3R_9474640_9476216;chr3R_9472709_9472922 50.90 56.13 50.00 24.40 38.16 55.06 56.70 65.13 46.46 56.36 43.23 62.03 59.56 50.56 52.94 59.95 48.89 27.86 50.95 58.47 56.59 64.41 54.11 44.85 39.45 50.84 39.39 26.89 41.89 37.70 58.08 59.18 41.88 56.48 56.45 40.52 46.00 42.52 35.14 58.08 56.36 48.56 62.11 43.09 43.55 NA 46.46 59.46 55.42 45.83 53.47 55.34 35.29 49.06 55.00 57.89 47.95 62.71 K intron_retention bowl,RI_chr2L_3772695_3773616 chr2L + chr2L_3780580_3781903 chr2L_3780579_3780580;chr2L_3781903_3781904 chr2L_3779698_3780579;chr2L_3781904_3784109 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 2.17 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.90 0.00 NA 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 K jcn_only_AD Pi3K92E,I_chr3R_16459436_16459551,I_chr3R_16459436_16459848 chr3R - chr3R_16459436_16459848;chr3R_16459436_16460267;chr3R_16459436_16460340;chr3R_16459436_16459551 chr3R_16459436_16460287 chr3R_16459336_16459435;chr3R_16460341_16460435 3.12 2.70 6.25 5.63 12.00 3.45 1.64 5.88 0.00 0.00 4.76 1.19 0.00 3.39 7.27 4.00 5.00 2.78 0.00 3.17 4.17 3.45 2.90 2.17 0.00 2.22 2.17 3.57 4.76 0.00 0.00 NA 2.78 3.45 0.00 0.00 0.00 3.12 5.56 3.37 10.00 1.41 3.23 1.39 NA 0.00 4.35 2.94 1.19 NA 0.00 9.09 NA NA 3.92 13.64 4.00 NA K intron_retention par-6 chrX + chrX_17598634_17598700 chrX_17598633_17598634;chrX_17598700_17598701 chrX_17598405_17598633;chrX_17598701_17601129 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 2.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Acf1,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27625096_27625160 chr3R_27625095_27625096;chr3R_27625160_27625161 chr3R_27624657_27625095;chr3R_27625161_27625529 2.78 1.59 0.00 7.41 6.67 4.35 5.26 5.00 2.22 10.00 0.00 5.15 6.52 5.13 0.00 2.27 0.00 3.12 3.57 2.80 0.00 0.00 0.00 2.78 6.98 5.56 5.48 0.00 9.09 0.00 0.00 1.75 10.00 7.69 0.00 0.00 2.33 5.26 0.00 3.45 2.94 6.12 2.94 0.00 2.13 2.53 3.75 5.71 4.88 6.02 0.00 0.00 0.00 0.00 5.56 1.69 0.00 0.00 K intron_retention CG2767 chr3R - chr3R_3832499_3832558 chr3R_3832498_3832499;chr3R_3832558_3832559 chr3R_3831939_3832498;chr3R_3832559_3832685 0.00 0.00 0.00 2.38 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.63 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 4.44 3.85 1.92 0.00 0.00 2.44 0.00 0.00 0.00 4.84 0.00 0.00 3.30 1.32 0.00 0.00 0.00 0.00 2.22 1.35 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 K intron_retention CG12946,noncoding_15730,I_chr3R_5599701_5600032,I_chr3R_5609682_5609889 chr3R - chr3R_5599701_5600032 chr3R_5599700_5599701;chr3R_5600032_5600033 chr3R_5599601_5599700;chr3R_5600033_5600132 94.12 100.00 NA 100.00 NA 100.00 90.00 100.00 88.89 NA NA 90.00 100.00 NA 91.67 100.00 NA 100.00 NA 94.12 100.00 NA 90.00 88.89 NA 100.00 93.75 NA 88.89 91.67 100.00 NA 100.00 90.91 NA 100.00 100.00 NA 84.62 93.75 NA 88.24 NA 100.00 NA NA NA 90.91 94.12 NA 91.67 NA NA NA 90.00 NA NA 100.00 K cassette ens,I_chr3L_4130719_4131120 chr3L - chr3L_4127163_4131120;chr3L_4127163_4129650 chr3L_4127163_4128613;chr3L_4128974_4131120,chr3L_4128974_4129650 chr3L_4128614_4128973 chr3L_4126989_4127162;chr3L_4131121_4131220 11.49 11.32 15.00 3.70 11.29 16.22 10.23 5.21 13.11 5.63 5.06 32.58 5.56 8.57 11.36 18.18 8.96 26.37 8.57 26.11 13.33 4.46 17.18 15.08 8.74 4.49 10.28 9.71 21.90 12.98 8.08 10.17 13.37 10.28 9.52 5.22 14.36 10.49 11.49 12.24 14.93 12.43 11.43 8.77 20.16 13.64 17.07 16.79 12.95 14.49 10.00 8.51 15.79 12.90 13.51 7.29 18.00 21.25 K alternative_last_exon fz,CG13482 chr3L + chr3L_14310438_14359847 chr3L_14310438_14325073 chr3L_14359848_14361814 chr3L_14325074_14326977 chr3L_14310419_14310437 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA K jcn_only_AD CG34394,I_chr2L_3365674_3365965 chr2L - chr2L_3367720_3367903 chr2L_3367720_3367850 chr2L_3367245_3367719;chr2L_3367904_3368056 0.00 0.00 1.08 2.86 1.96 0.00 2.47 3.61 1.69 0.00 0.00 1.80 0.00 0.00 1.23 0.00 1.67 1.75 1.82 0.89 1.64 0.00 1.33 1.49 0.00 0.00 0.00 4.29 20.63 2.94 0.00 0.00 1.22 0.00 3.85 0.00 0.88 0.00 0.00 0.00 2.38 0.74 0.00 0.00 0.00 0.00 0.00 2.67 0.00 0.00 1.75 0.00 0.00 0.00 1.64 3.77 0.00 0.00 K intron_retention HmgD,I_chr2R_17601672_17603325,I_chr2R_17603119_17603196 chr2R + chr2R_17603123_17603196 chr2R_17603122_17603123;chr2R_17603196_17603197 chr2R_17602911_17603122;chr2R_17603197_17603296 0.00 0.16 0.00 0.00 0.27 0.00 0.00 0.42 0.25 0.00 0.00 0.48 0.65 0.00 0.00 0.00 0.00 0.23 0.31 0.00 0.00 0.00 0.32 0.00 0.00 0.28 0.72 1.92 0.00 0.00 0.00 0.38 0.00 0.37 0.00 0.00 0.13 0.00 0.28 0.23 0.29 0.26 0.36 0.00 0.00 0.35 0.00 0.42 0.14 0.00 0.22 0.00 0.00 0.40 0.23 0.51 0.00 0.14 K intron_retention HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13176263_13178924 chrX_13176262_13176263;chrX_13178924_13178925 chrX_13176199_13176262;chrX_13178925_13178936 1.37 0.00 0.00 0.00 0.00 0.00 0.00 7.41 2.35 NA 0.00 4.44 5.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 8.33 6.06 10.00 5.56 0.00 24.14 NA 12.50 0.00 6.06 0.00 0.00 1.37 9.09 5.71 3.45 5.56 6.67 4.76 NA 0.00 0.00 6.45 NA NA 3.85 10.71 2.90 0.00 9.68 0.00 0.00 NA 4.76 NA NA 0.00 K alternative_acceptor CG11299,noncoding_8970,I_chr2R_19619053_19619186 chr2R + chr2R_19601598_19602203 chr2R_19601598_19602188 chr2R_19601444_19601597;chr2R_19602204_19602422 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA capu,I_chr2L_3884519_3902594,I_chr2L_3887800_3888648,I_chr2L_3887896_3888648 chr2L - chr2L_3887557_3888648 chr2L_3887800_3888648 chr2L_3888649_3888710;chr2L_3886984_3887556 0.00 NA NA NA NA NA 10.00 NA 0.00 NA NA NA NA NA NA NA NA NA 4.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 NA 0.00 NA 4.17 0.00 NA NA NA NA NA NA NA NA NA K intron_retention CG4049,I_chr2R_20000795_20001276 chr2R - chr2R_19996175_19996223 chr2R_19996174_19996175;chr2R_19996223_19996224 chr2R_19994610_19996174;chr2R_19996224_19996457 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG42238,I_chr2L_20967747_20967858,I_chr2L_20967747_20968017,I_chr2L_20967747_20968635,I_chr2L_20967747_20968842,I_chr2L_20967747_20969164,I_chr2L_20967747_20993232,I_chr2L_20967747_21051685,RI_chr2L_20967747_21051705,noncoding_4091,RI_chr2L_21028682_21051773 chr2L - chr2L_20967747_20968810 chr2L_20967747_20968786 chr2L_20967726_20967746;chr2L_20968811_20968882 91.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 91.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Pax,RI_chr2L_19404683_19426205,RI_chr2L_19404823_19409403 chr2L - chr2L_19409911_19410247 chr2L_19409910_19409911;chr2L_19410247_19410248 chr2L_19409769_19409910;chr2L_19410248_19410413 0.43 0.00 0.00 0.34 0.43 0.52 0.75 0.66 0.56 0.00 0.00 0.95 1.22 0.00 0.65 0.61 0.00 0.80 0.71 1.14 0.97 0.37 0.34 0.00 0.49 0.00 1.28 0.00 0.54 0.00 0.67 0.79 0.00 1.10 0.42 0.00 0.28 0.00 0.28 0.68 0.61 0.19 0.00 0.35 1.05 0.00 0.81 0.79 0.47 0.00 0.74 1.38 0.00 1.12 0.36 0.00 0.52 0.00 K alternative_donor Shawn_Tyler,CG14213 chrX + chrX_19533110_19533177 chrX_19533117_19533177 chrX_19533178_19533426;chrX_19532929_19533109 77.78 80.95 71.43 74.65 74.29 79.49 88.52 78.57 82.93 71.43 71.88 69.23 85.19 80.56 78.85 77.27 82.86 63.64 88.64 79.41 63.16 71.05 72.41 80.77 86.11 82.50 82.69 80.00 80.56 74.07 67.50 86.36 80.00 73.33 82.05 93.10 63.83 68.09 74.55 72.97 78.79 84.71 76.32 68.89 72.73 77.59 72.50 85.19 78.82 80.00 76.27 72.73 70.59 77.78 83.93 80.43 76.27 65.52 K jcn_only_AD fs(1)h,I_chrX_7950171_7952371,RI_chrX_7954192_7954783,I_chrX_7954192_7955240 chrX - chrX_7954192_7955408 chrX_7954192_7955296 chrX_7954092_7954191;chrX_7955409_7955445 96.43 NA NA NA NA NA 91.30 96.88 97.30 NA NA 95.83 NA NA NA 96.43 NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 96.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG3635 chr2L + chr2L_22183467_22183599;chr2L_22183467_22183607 chr2L_22183467_22183527 chr2L_22183394_22183466;chr2L_22183608_22183915 40.37 36.64 27.42 26.47 29.33 35.63 54.40 31.48 38.66 54.67 33.70 39.69 38.46 47.25 32.06 41.73 33.68 28.71 40.37 40.30 36.08 27.68 32.03 46.25 54.02 38.96 32.93 38.37 48.57 41.94 41.53 51.46 34.06 35.90 37.38 64.77 49.61 45.16 44.03 49.17 51.49 33.04 34.29 53.59 40.31 51.14 48.42 55.90 42.72 35.51 48.10 56.00 42.75 47.79 41.88 42.14 37.77 48.28 K intron_retention CG4630,RI_chr2R_9103472_9103634,I_chr2R_9103765_9103852,I_chr2R_9103910_9104108,I_chr2R_9103956_9104108,RI_chr2R_9104206_9104265 chr2R - chr2R_9103765_9103852 chr2R_9103764_9103765;chr2R_9103852_9103853 chr2R_9103665_9103764;chr2R_9103853_9103909 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA K jcn_only_AD CG2177,I_chr4_334269_334329,I_chr4_334269_334505 chr4 - chr4_334269_334329;chr4_334269_334373 chr4_334269_334324 chr4_334169_334268;chr4_334374_334429 10.71 8.20 12.82 9.62 7.89 10.75 37.96 16.30 20.75 3.70 21.31 7.41 11.11 7.61 11.76 9.89 15.15 9.52 10.53 9.52 12.77 6.17 14.29 13.51 14.10 10.57 4.41 4.65 8.11 5.95 23.45 5.94 13.33 12.43 9.23 3.00 16.13 16.67 10.17 9.70 10.68 16.22 17.53 10.71 4.21 15.71 18.37 8.90 8.20 15.22 14.29 9.30 11.94 12.31 13.87 9.38 10.71 4.21 K alternative_donor Nedd4,I_chr3L_17526753_17527450,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17526753_17527450;chr3L_17526749_17527450 chr3L_17526950_17527450 chr3L_17527451_17527550;chr3L_17526708_17526748 46.77 48.00 50.00 64.29 23.53 29.79 53.85 38.71 50.70 57.14 50.00 43.96 51.85 42.86 36.17 55.56 40.00 42.86 46.67 50.00 51.72 50.00 46.77 41.67 35.42 42.50 43.24 66.67 36.11 41.18 37.50 50.00 43.40 53.12 50.00 52.27 65.22 45.45 48.89 66.00 42.11 36.56 35.48 58.06 50.00 39.39 54.55 47.27 39.56 47.62 50.00 47.06 20.83 50.00 34.00 33.33 26.67 32.14 K alternative_donor RpL27A,E_chr2L_4457411_4457977,I_chr2L_4457510_4457892,snoRNA:Me18S-C1831,I_chr2L_4458058_4458120 chr2L - chr2L_4457510_4457892 chr2L_4457510_4457739 chr2L_4457412_4457509;chr2L_4457893_4457992 99.99 100.00 100.00 99.97 100.00 100.00 99.99 99.99 99.99 100.00 100.00 99.99 99.99 100.00 100.00 99.99 99.99 100.00 100.00 99.99 99.99 99.63 99.99 100.00 99.99 99.98 99.99 100.00 99.99 100.00 100.00 99.99 100.00 99.99 99.99 99.99 100.00 100.00 99.99 99.99 100.00 100.00 99.98 100.00 99.99 100.00 99.99 99.99 99.99 100.00 99.99 100.00 100.00 99.99 100.00 100.00 100.00 100.00 N intron_retention Moe,I_chrX_8774434_8791759 chrX - chrX_8791324_8792216 chrX_8791323_8791324;chrX_8792216_8792217 chrX_8792217_8792259 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 82.86 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA NA K intron_retention CG15609,C_chr2R_12899322_12900789,I_chr2R_12902708_12903184 chr2R - chr2R_12900214_12900789 chr2R_12900213_12900214;chr2R_12900789_12900790 chr2R_12899457_12900213;chr2R_12900790_12900889 100.00 100.00 100.00 93.75 100.00 100.00 64.10 97.73 98.08 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 97.87 95.83 94.44 97.62 100.00 100.00 94.44 100.00 100.00 90.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 97.73 94.74 100.00 100.00 100.00 100.00 100.00 96.88 94.12 96.30 100.00 100.00 100.00 100.00 100.00 100.00 NA K intron_retention f-cup,I_chr3R_9524004_9524059,EI_chr3R_9524613_9524789 chr3R - chr3R_9523761_9523812 chr3R_9523760_9523761;chr3R_9523812_9523813 chr3R_9523557_9523760;chr3R_9523813_9524002 0.00 0.00 7.41 0.00 0.00 5.56 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 7.50 15.00 12.50 0.00 16.67 NA 0.00 2.94 0.00 5.56 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 2.04 4.17 2.27 0.00 0.00 0.00 0.00 4.17 0.00 NA K alternative_donor Fkbp13,I_chr2R_17375346_17375523 chr2R - chr2R_17375351_17375523 chr2R_17375351_17375511 chr2R_17374670_17375350;chr2R_17375524_17375623 0.48 0.18 0.24 0.53 0.00 0.82 0.88 0.27 0.33 0.56 0.80 0.70 1.01 0.55 0.82 0.22 0.77 0.22 0.47 0.48 0.49 0.74 1.01 0.32 1.38 0.28 1.08 1.11 2.23 0.60 0.90 0.49 0.17 0.59 0.00 0.33 0.59 0.42 0.64 0.40 0.43 0.40 0.00 0.48 0.31 0.27 0.56 0.24 0.65 0.64 0.24 0.00 0.47 0.19 0.85 0.32 0.13 0.27 K intron_retention CG15438,CG15439,CG15440 chr2L - chr2L_4448294_4448359 chr2L_4448293_4448294;chr2L_4448359_4448360 chr2L_4447906_4448293;chr2L_4448360_4448710 4.35 2.70 2.94 3.23 0.00 3.23 4.00 0.00 2.67 0.00 4.76 0.86 3.70 1.89 2.41 16.47 0.00 0.00 0.00 5.11 0.00 28.57 4.81 3.90 8.00 0.00 4.35 7.25 6.32 6.35 4.48 8.82 15.29 4.72 12.77 8.57 4.17 3.12 2.56 6.50 7.14 1.61 0.00 10.71 7.53 7.95 6.45 10.09 2.29 7.55 4.21 4.76 0.00 6.25 7.79 7.27 0.00 6.93 K intron_retention Incenp chr2R + chr2R_3167672_3167734 chr2R_3167671_3167672;chr2R_3167734_3167735 chr2R_3166612_3167671;chr2R_3167735_3167831 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.99 6.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA ssp4,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13414489_13414718;chr2R_13413922_13414718;chr2R_13413823_13414718;chr2R_13413919_13414718 chr2R_13414486_13414718 chr2R_13414719_13414817 98.37 97.83 98.17 97.44 97.98 98.96 98.25 99.37 99.63 96.83 92.68 99.09 97.98 98.37 99.21 99.05 99.07 100.00 100.00 99.44 97.94 94.06 98.68 98.21 93.02 88.30 94.74 100.00 98.87 97.32 96.67 100.00 98.84 99.39 99.10 95.68 97.51 99.15 98.84 97.70 96.79 98.17 94.52 98.73 96.27 97.73 96.92 98.28 99.56 100.00 99.33 98.91 95.29 100.00 99.35 98.02 100.00 98.77 K intron_retention I_chrX_7993650_7995126,Gclc chrX - chrX_8009614_8010024 chrX_8009613_8009614;chrX_8010024_8010025 chrX_8009450_8009613;chrX_8010025_8010150 2.35 0.00 0.00 8.24 0.00 6.12 1.08 5.21 3.12 0.00 5.00 3.73 3.39 0.00 3.28 4.10 0.00 6.67 0.00 3.92 4.44 2.95 1.00 0.82 2.22 5.26 1.32 2.75 12.88 1.97 2.40 1.69 2.92 2.56 0.93 0.00 0.44 0.71 2.35 1.02 3.66 5.22 3.77 1.49 2.70 2.59 0.00 2.81 2.91 2.27 2.16 1.04 0.00 0.00 1.59 1.41 3.96 3.75 K jcn_only_AA CG32394,RI_chr3L_6731199_6731803,dikar chr3L - chr3L_6730773_6731803 chr3L_6731199_6731803 chr3L_6731804_6731903;chr3L_6730635_6730772 0.00 4.00 3.45 9.09 0.00 2.78 0.00 0.00 1.32 8.16 NA 4.35 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 24.49 1.69 8.11 0.00 0.00 0.00 17.07 12.96 8.33 0.00 NA 9.30 0.00 0.00 2.78 6.90 0.00 5.88 8.57 NA 0.00 0.00 18.92 NA 4.76 NA 11.84 0.00 NA 0.00 4.00 0.00 NA 0.00 NA NA 0.00 K intron_retention Trf4-1,I_chrX_8459198_8459266 chrX + chrX_8459198_8459409 chrX_8459197_8459198;chrX_8459409_8459410 chrX_8459098_8459197;chrX_8459410_8460089 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 4.35 0.00 0.00 1.30 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 K alternative_donor cbs,I_chr2R_9340506_9340593,I_chr2R_9340512_9340593 chr2R + chr2R_9340536_9340593;chr2R_9340512_9340593 chr2R_9340506_9340593 chr2R_9340594_9340693;chr2R_9340412_9340505 6.98 4.35 7.69 4.76 7.69 0.00 8.89 8.57 7.41 0.00 14.29 2.44 13.64 4.17 11.54 10.26 5.88 16.00 3.70 7.55 7.69 8.33 6.45 3.23 14.29 5.56 3.12 8.33 15.00 8.70 9.30 0.00 5.26 4.44 19.05 4.76 4.76 10.00 6.67 3.12 12.12 6.67 13.33 6.67 14.29 6.98 4.35 5.26 2.78 10.26 2.70 14.29 0.00 3.70 11.11 15.91 14.29 3.45 K jcn_only_AA CG2219,I_chr4_199813_199889,RI_chr4_202143_202194 chr4 - chr4_199813_199889;chr4_199822_199889 chr4_199838_199889 chr4_199890_199942;chr4_199758_199812 93.44 96.00 90.00 88.57 97.44 100.00 90.91 94.79 95.86 92.31 97.56 92.00 94.37 92.42 97.73 92.13 90.14 89.47 91.94 92.59 91.18 90.00 95.15 95.40 92.45 88.89 95.35 94.64 93.02 98.41 90.62 94.64 91.67 89.47 94.23 95.92 94.44 92.31 92.86 94.05 90.91 87.00 88.24 96.30 90.00 93.75 100.00 93.44 91.60 91.51 93.51 94.74 100.00 92.31 95.65 96.72 95.88 96.10 K jcn_only_AA CG1599,I_chr2R_5729744_5729805 chr2R - chr2R_5729673_5729805;chr2R_5729731_5729805 chr2R_5729744_5729805 chr2R_5729806_5729905;chr2R_5729644_5729672 0.91 0.00 1.00 1.14 3.23 0.00 1.63 1.05 1.14 0.00 2.82 0.00 0.91 0.00 0.00 0.00 0.00 1.15 1.74 1.53 1.27 0.00 0.74 1.47 2.25 1.65 0.00 0.00 2.04 0.00 0.78 1.59 0.00 0.96 1.67 0.00 0.00 0.00 0.00 0.80 0.00 0.00 3.03 1.22 2.04 3.03 1.68 0.00 1.54 2.08 0.00 1.39 0.00 1.59 0.93 0.85 0.88 0.00 K jcn_only_AA CG6043,I_chr2L_13267973_13268086 chr2L + chr2L_13274377_13274690;chr2L_13274377_13274642 chr2L_13274377_13274651 chr2L_13274310_13274376;chr2L_13274691_13274770 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA K intron_retention B4,I_chr2L_13513474_13549131,I_chr2L_13547133_13549131,I_chr2L_13547162_13547692,I_chr2L_13547304_13549131 chr2L - chr2L_13547304_13549131 chr2L_13547303_13547304;chr2L_13549131_13549132 chr2L_13547204_13547303;chr2L_13549132_13549231 56.25 41.67 53.33 73.68 NA 50.00 65.00 55.56 72.00 NA NA 34.62 NA 63.64 52.63 72.22 50.00 72.73 53.33 63.64 66.67 71.43 43.75 66.67 60.00 50.00 53.33 65.00 71.43 62.50 55.00 70.00 54.05 57.14 58.82 66.67 54.55 NA 53.33 62.50 53.33 65.22 50.00 45.45 42.86 56.25 NA 76.19 57.69 64.29 45.45 60.00 NA NA 40.00 40.00 56.25 56.25 K intron_retention CG12130,I_chr2R_5849630_5849730,I_chr2R_5850249_5850702 chr2R + chr2R_5849568_5849730 chr2R_5849567_5849568;chr2R_5849730_5849731 chr2R_5849530_5849567;chr2R_5849731_5849830 4.38 3.28 3.57 7.50 0.00 7.69 12.90 10.53 1.37 0.00 0.00 7.89 3.85 NA 4.17 0.00 5.56 8.33 0.00 3.64 0.00 21.95 5.32 8.00 0.00 0.00 8.20 5.56 5.26 5.00 11.76 11.11 4.17 0.00 4.44 0.00 4.31 1.59 6.38 10.42 1.96 5.06 10.53 1.72 2.27 6.35 1.49 2.70 5.26 3.90 6.15 7.69 0.00 5.26 3.85 5.80 5.80 1.06 K intron_retention CG7006 chr3R + chr3R_20676493_20676543 chr3R_20676492_20676493;chr3R_20676543_20676544 chr3R_20676314_20676492;chr3R_20676544_20677192 0.00 0.00 0.00 5.41 0.00 0.00 0.00 2.27 0.00 4.35 0.00 3.12 0.00 6.67 0.00 0.00 0.00 3.33 2.56 3.30 0.00 0.00 3.28 0.00 4.00 0.00 0.00 7.89 20.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 4.55 0.00 0.00 6.56 0.00 0.00 0.00 1.27 0.00 K intron_retention RI_chr3L_9408567_9410728,RpS17,I_chr3L_9422428_9422797 chr3L - chr3L_9422215_9422273 chr3L_9422214_9422215;chr3L_9422273_9422274 chr3L_9422116_9422214;chr3L_9422274_9422425 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.02 0.00 0.02 0.00 0.00 0.06 0.00 0.00 0.00 0.05 0.03 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.24 0.02 0.00 0.06 0.00 0.00 0.05 0.00 0.03 0.00 0.00 0.01 0.00 0.00 0.02 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.03 0.00 0.00 0.03 0.03 0.02 0.00 0.00 0.01 K jcn_only_AD PhKgamma,I_chrX_11590179_11590249,I_chrX_11590183_11590435,I_chrX_11596563_11597322 chrX + chrX_11590345_11590435;chrX_11589973_11590435 chrX_11590179_11590435 chrX_11590436_11590535;chrX_11589857_11589972 4.00 4.35 NA NA NA NA NA 33.33 8.33 0.00 NA 4.17 NA NA NA NA NA NA NA 7.69 NA 0.00 3.45 0.00 4.55 NA 0.00 0.00 4.00 NA NA NA NA NA NA NA 7.41 0.00 4.00 5.00 NA 5.13 NA 4.35 NA 0.00 NA 0.00 NA 0.00 3.12 4.55 NA NA NA 4.55 NA NA K alternative_donor CG3689,I_chr3L_9405436_9406302 chr3L + chr3L_9405083_9406302 chr3L_9405436_9406302 chr3L_9406303_9406402;chr3L_9404917_9405082 10.13 7.89 10.13 7.64 6.58 6.94 13.85 10.40 12.23 7.81 14.00 11.81 19.40 10.00 8.24 11.22 12.90 11.84 11.70 14.09 17.50 7.79 18.89 8.26 13.33 12.68 14.04 15.38 11.11 9.09 12.63 6.40 8.09 10.29 8.97 8.70 13.33 11.36 12.10 8.75 4.58 13.10 12.31 15.07 3.20 6.90 8.20 4.90 14.08 7.48 11.29 8.25 10.13 5.45 8.42 8.87 5.26 5.58 K intron_retention Dscam,F_chr2R_3219886_3225754,I_chr2R_3219886_3226532,FI_chr2R_3219886_3227659,F_chr2R_3219886_3228449,F_chr2R_3219886_3228832,F_chr2R_3226043_3235353,F_chr2R_3227948_3235353,F_chr2R_3228738_3235353,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3225665_3235353 chr2R_3225664_3225665;chr2R_3235353_3235354 chr2R_3225386_3225664;chr2R_3235354_3235453 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA NA 93.75 NA NA NA 100.00 NA NA NA 88.89 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 92.86 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG8635 chr2R - chr2R_4519012_4519137 chr2R_4519012_4519109 chr2R_4518577_4519011;chr2R_4519138_4519178 0.00 0.00 0.00 0.70 0.00 0.00 0.00 3.07 1.67 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.51 0.00 1.37 0.00 0.00 0.00 1.35 0.00 1.61 1.69 1.32 2.91 0.00 0.98 0.88 1.82 0.00 1.96 2.22 0.00 0.00 0.00 0.66 0.00 2.38 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.86 0.00 0.87 0.51 K jcn_only_AA CG31705,I_chr2L_11525668_11525916 chr2L - chr2L_11525668_11528120 chr2L_11526013_11528120 chr2L_11528121_11528201;chr2L_11525594_11525667 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585739_2586265;chr3L_2585739_2586036;chr3L_2585739_2586413 chr3L_2585739_2586402 chr3L_2585639_2585738;chr3L_2586414_2586502 85.96 83.33 87.50 89.38 87.50 89.74 78.81 89.78 86.84 82.76 84.72 89.10 88.24 90.22 88.89 87.01 85.96 84.00 84.44 90.30 88.14 80.68 85.11 81.03 81.82 87.50 81.48 81.82 73.20 84.72 91.07 90.32 83.33 88.81 84.93 87.01 80.00 87.30 87.27 83.82 80.00 88.54 86.57 81.91 92.86 90.14 81.08 85.53 87.43 79.17 84.69 87.04 85.29 84.62 91.82 87.76 83.33 82.54 K intron_retention CG8485,I_chr2R_10126696_10126750 chr2R - chr2R_10126696_10126955 chr2R_10126695_10126696;chr2R_10126955_10126956 chr2R_10126596_10126695;chr2R_10126956_10127190 0.00 2.86 0.00 4.17 0.00 3.12 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 5.71 4.35 0.00 0.00 3.23 0.00 0.00 1.92 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 5.41 0.00 0.00 0.00 K jcn_only_AD Vrp1,I_chr2R_17997529_17997692 chr2R - chr2R_18000094_18003669 chr2R_18000094_18003655 chr2R_17999715_18000093;chr2R_18003670_18003673 85.71 NA NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG5978,I_chr3L_8616035_8616091 chr3L - chr3L_8616650_8616707 chr3L_8616649_8616650;chr3L_8616707_8616708 chr3L_8616177_8616649;chr3L_8616708_8616787 0.00 6.25 0.00 0.00 0.00 0.00 3.70 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 NA 9.52 8.33 NA 4.76 0.00 8.70 0.00 0.00 0.00 NA NA 3.70 5.26 0.00 0.00 14.29 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.38 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K cassette grp,I_chr2L_16697644_16698961,R_chr2L_16698072_16698138 chr2L + chr2L_16697644_16698961 chr2L_16697644_16698138;chr2L_16698349_16698961 chr2L_16698139_16698348 chr2L_16697544_16697643;chr2L_16698962_16699061 98.61 98.86 98.63 99.21 98.61 98.41 98.63 99.09 97.50 98.33 97.73 97.62 98.04 98.39 97.67 98.81 98.18 98.39 100.00 98.79 98.11 99.00 97.69 97.41 98.53 97.59 98.92 93.22 98.61 98.82 98.78 98.65 99.04 97.25 98.65 91.25 97.45 98.95 97.97 98.32 93.85 99.30 98.25 98.86 98.02 98.98 97.67 99.07 99.30 98.63 99.09 98.25 97.44 98.86 96.70 98.96 98.90 99.00 K intron_retention CG7970 chr3L + chr3L_1653044_1653141 chr3L_1653043_1653044;chr3L_1653141_1653142 chr3L_1652975_1653043;chr3L_1653142_1653254 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 2.41 0.00 0.00 12.77 0.00 0.00 0.00 0.00 1.98 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 6.25 0.00 0.00 NA 0.00 0.00 4.17 0.00 K intron_retention Jupiter,I_chr3R_7417030_7419354,I_chr3R_7417630_7417716,RI_chr3R_7442793_7445425 chr3R - chr3R_7417634_7417716 chr3R_7417633_7417634;chr3R_7417716_7417717 chr3R_7417223_7417633;chr3R_7417717_7417734 92.31 90.91 100.00 93.33 NA NA 85.71 100.00 100.00 NA NA 92.86 87.50 100.00 100.00 81.82 NA 87.50 NA 94.74 NA 95.24 95.83 80.00 90.91 90.00 78.95 70.83 70.00 82.35 100.00 100.00 78.57 91.67 93.33 91.67 80.95 92.31 83.33 92.00 85.71 95.24 NA 92.31 93.33 88.46 93.33 94.44 93.75 93.75 87.50 86.67 92.86 86.67 88.89 100.00 94.44 93.75 K intron_retention CG30085,I_chr2R_11756325_11756380 chr2R - chr2R_11756325_11756409 chr2R_11756324_11756325;chr2R_11756409_11756410 chr2R_11756225_11756324;chr2R_11756410_11756480 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 2.15 0.00 0.00 1.98 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 20.00 1.37 0.00 0.00 0.00 4.26 8.82 2.63 1.72 0.00 0.00 0.00 1.54 0.00 0.00 3.39 2.56 3.39 0.00 0.00 2.15 0.00 4.44 2.86 0.00 3.45 2.70 0.00 0.00 3.80 0.00 3.85 0.00 0.00 0.00 0.00 1.22 K jcn_only_AA I_chr2R_9844856_9845327,CG13349,RI_chr2R_9846641_9846709 chr2R - chr2R_9846605_9846709 chr2R_9846641_9846709 chr2R_9846710_9846809;chr2R_9846541_9846604 1.16 0.66 1.14 1.87 1.90 0.00 1.02 0.95 2.79 1.16 1.10 1.62 2.90 2.17 0.90 0.00 7.04 2.33 2.90 0.49 2.33 2.21 0.96 0.52 0.00 0.00 1.04 0.00 1.67 2.07 1.15 0.88 2.59 0.65 1.77 0.88 0.73 0.48 0.88 2.69 0.00 1.33 4.48 1.57 2.02 3.66 0.55 4.31 2.36 1.31 1.35 2.25 2.00 0.74 0.93 2.25 0.95 0.59 K cassette Nedd4,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17534504_17536604 chr3L_17534504_17534775;chr3L_17535067_17536604 chr3L_17534776_17535066 chr3L_17534419_17534503;chr3L_17536605_17536704 3.65 2.33 3.67 2.40 2.78 3.37 4.72 2.99 2.88 3.88 2.67 4.72 3.85 4.76 4.12 2.74 2.78 2.25 2.20 2.26 3.61 10.40 4.06 4.00 2.22 1.15 3.65 2.60 8.90 5.43 6.19 3.85 5.05 2.52 4.46 4.35 4.26 3.45 5.81 3.27 3.61 2.53 1.49 10.37 4.46 3.82 3.45 7.73 2.91 1.10 4.67 2.04 8.79 2.90 2.19 7.14 12.68 11.81 K jcn_only_AD ATPsyn-beta chr4 + chr4_1052580_1053532 chr4_1052864_1053532 chr4_1053533_1053844;chr4_1052474_1052579 0.00 0.00 0.08 0.06 0.00 0.00 0.06 0.00 0.04 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.21 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.14 0.00 0.05 0.18 0.11 0.00 0.00 0.00 0.08 0.00 0.12 0.00 K intron_retention Rbp2,I_chrX_16343528_16343906 chrX + chrX_16345825_16345951 chrX_16345824_16345825;chrX_16345951_16345952 chrX_16345735_16345824;chrX_16345952_16346631 12.50 NA NA NA NA NA NA NA NA NA 3.45 NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA 22.73 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor nito,I_chr2R_3852832_3852883 chr2R + chr2R_3850065_3850273 chr2R_3850109_3850273 chr2R_3850274_3850898;chr2R_3850045_3850064 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA 100.00 K intron_retention lt,I_chr2L_22817840_22817968,RI_chr2L_22820498_22823377,RI_chr2L_22823579_22823640,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22818652_22820169 chr2L_22818651_22818652;chr2L_22820169_22820170 chr2L_22818298_22818651;chr2L_22820170_22820497 4.17 1.43 4.35 5.22 6.15 1.59 3.23 2.42 4.30 0.00 3.03 4.79 2.11 5.41 2.22 5.26 2.94 2.74 1.75 0.70 3.77 5.00 3.08 6.38 0.00 2.50 2.70 8.00 11.76 7.89 3.88 12.50 10.34 4.26 4.17 5.88 0.00 8.82 2.56 5.56 5.00 2.98 5.62 3.03 4.00 6.82 11.76 0.00 5.30 13.64 2.78 4.17 3.85 8.33 1.12 3.23 12.07 19.05 K cassette Ac3,I_chr2L_21635211_21637957,I_chr2L_21643253_21646594 chr2L + chr2L_21635211_21637957 chr2L_21635211_21637658;chr2L_21637787_21637957 chr2L_21637659_21637786 chr2L_21635129_21635210;chr2L_21637958_21638057 93.75 90.00 92.31 73.33 100.00 83.33 100.00 100.00 100.00 90.00 100.00 80.95 100.00 90.91 91.67 100.00 100.00 100.00 92.31 88.46 85.71 100.00 92.86 100.00 90.00 90.00 93.33 100.00 100.00 88.89 100.00 100.00 93.75 94.44 100.00 70.59 94.44 100.00 94.44 100.00 80.00 93.75 85.71 90.91 80.00 100.00 100.00 88.89 100.00 93.75 94.44 90.00 100.00 100.00 86.67 90.00 80.00 88.89 K intron_retention CG7407 chr3L + chr3L_21816764_21816825 chr3L_21816763_21816764;chr3L_21816825_21816826 chr3L_21816515_21816763;chr3L_21816826_21817662 6.67 NA 12.50 8.70 NA 11.76 NA 16.00 6.67 NA NA 10.00 12.50 NA 0.00 14.29 NA NA 5.88 15.15 NA NA 0.00 11.76 NA NA 16.67 5.88 31.25 12.50 30.77 NA NA 0.00 NA 28.57 6.67 NA 0.00 0.00 46.67 4.76 NA NA 16.67 0.00 3.85 NA 12.00 0.00 4.35 NA 0.00 0.00 NA 5.26 0.00 NA K alternative_last_exon br,I_chrX_1517022_1518170,chrX_1531825_1532171.0,chrX_1532359_1533289.0,chrX_1533577_1534629.0,chrX_1535554_1536485.0,chrX_1539850_1540090.0,chrX_1540212_1541396.0,chrX_1544237_1547430.0,chrX_1547632_1547887.0,noncoding_21384,dor chrX + chrX_1531368_1548424;chrX_1531368_1537100,chrX_1531368_1536917;chrX_1531368_1541397 chrX_1531368_1552820 chrX_1548425_1550023;chrX_1537101_1539195;chrX_1541398_1544171 chrX_1552821_1559444 chrX_1531317_1531367 7.81 7.27 6.38 6.00 7.14 9.76 12.70 4.88 7.46 5.13 8.70 5.56 10.81 8.00 3.85 13.43 28.12 11.11 8.89 7.21 4.65 15.62 2.83 10.26 9.76 10.26 11.48 23.40 5.66 4.95 5.77 2.70 4.44 9.68 7.81 5.66 10.00 10.71 11.11 2.91 7.32 0.95 11.36 9.62 10.87 6.06 10.64 2.63 7.27 9.86 6.49 11.90 6.25 14.29 9.68 9.09 4.17 2.36 K alternative_acceptor mub,RI_chr3L_21901021_21901163,I_chr3L_21908756_21909179 chr3L + chr3L_21914088_21914192;chr3L_21914088_21914153;chr3L_21914088_21914141 chr3L_21914088_21914156 chr3L_21914067_21914087;chr3L_21914193_21914427 21.68 24.24 30.00 5.00 28.57 15.00 15.38 22.22 18.00 12.50 42.86 25.71 17.65 18.75 15.79 16.67 27.27 23.53 NA 26.09 9.52 12.20 18.52 15.00 18.75 15.38 32.26 10.53 26.32 24.14 6.67 45.45 27.78 12.50 20.00 16.67 28.79 30.00 11.36 21.74 28.57 15.22 7.69 27.27 33.33 25.00 23.81 34.78 20.00 27.59 21.62 19.23 29.41 12.00 16.67 22.73 34.62 30.77 K intron_retention hppy,I_chr2R_15105700_15106080,I_chr2R_15106144_15108248 chr2R + chr2R_15105700_15111557 chr2R_15105699_15105700;chr2R_15111557_15111558 chr2R_15105636_15105699;chr2R_15111558_15111891 27.50 27.50 24.24 40.62 10.71 17.65 19.72 22.45 27.91 31.25 21.21 29.03 32.14 36.36 20.45 26.32 18.52 24.32 20.69 25.76 16.13 68.42 45.45 29.41 43.59 41.38 30.51 19.15 25.00 42.86 30.00 15.38 28.95 32.14 29.79 48.08 32.89 28.30 27.40 25.81 30.77 27.03 26.09 33.90 25.00 35.29 25.00 27.27 23.46 35.48 25.00 33.33 26.83 28.00 41.94 26.32 30.43 12.50 K jcn_only_AD Orc2 chr3R + chr3R_9791304_9791371 chr3R_9791308_9791371 chr3R_9791372_9792217;chr3R_9790714_9791303 3.85 5.00 0.00 6.45 0.00 0.00 10.34 2.33 8.00 NA 3.70 4.65 NA 4.55 4.65 0.00 0.00 5.26 0.00 0.00 4.35 NA 10.53 7.69 NA 0.00 5.00 NA NA 0.00 NA 0.00 3.33 2.50 0.00 NA 0.00 0.00 4.88 4.76 NA 7.25 4.00 0.00 5.13 9.38 NA 3.57 5.45 8.57 2.50 0.00 4.00 NA 6.38 2.94 0.00 4.35 K alternative_donor pelo,I_chr2L_9706747_9706980,I_chr2L_9707821_9708144,I_chr2L_9707891_9708144,I_chr2L_9708081_9708144 chr2L + chr2L_9707891_9708144;chr2L_9708081_9708144;chr2L_9707821_9708144 chr2L_9706747_9708144 chr2L_9708145_9708244;chr2L_9706647_9706746 100.00 100.00 100.00 97.56 100.00 100.00 97.92 97.22 98.91 100.00 100.00 98.73 100.00 100.00 100.00 98.44 100.00 97.44 100.00 98.63 100.00 97.67 98.41 98.46 100.00 98.08 98.57 97.78 100.00 100.00 100.00 100.00 100.00 98.21 100.00 98.31 100.00 100.00 100.00 98.77 100.00 97.40 100.00 100.00 100.00 100.00 100.00 98.85 97.47 100.00 98.53 100.00 100.00 100.00 100.00 100.00 100.00 99.06 K intron_retention CG7841,RI_chr3L_15499446_15500898,I_chr3L_15500695_15500898,RI_chr3L_15500713_15500898 chr3L - chr3L_15499446_15500572 chr3L_15499445_15499446;chr3L_15500572_15500573 chr3L_15499346_15499445;chr3L_15500573_15500666 21.63 18.75 20.00 22.22 NA 14.29 22.86 33.33 29.73 0.00 30.77 23.81 NA NA 27.27 35.29 36.36 43.75 26.67 40.00 NA 15.15 16.67 25.00 NA 22.22 16.67 13.04 18.18 15.62 30.00 28.57 8.57 22.22 13.33 20.00 13.64 NA 22.22 36.36 16.00 26.32 NA 8.00 21.05 18.52 26.67 23.08 25.93 11.76 14.29 6.25 20.00 NA 30.00 NA 11.76 3.57 K alternative_donor gus,I_chr2R_1009158_1009345,RI_chr2R_1009158_1011540,I_chr2R_1009346_1015730 chr2R - chr2R_1009158_1009273;chr2R_1009158_1009241 chr2R_1009158_1009277 chr2R_1009058_1009157;chr2R_1009278_1009300 25.00 NA NA 28.57 NA NA NA 18.18 40.00 NA NA 25.00 16.67 NA NA 25.00 NA NA NA 57.14 NA NA NA 50.00 NA NA NA NA NA NA NA NA NA 23.08 NA NA NA NA NA NA NA 14.29 20.00 NA NA NA NA NA 28.57 NA NA NA NA NA NA NA NA 44.44 K alternative_donor CG12393,CG9135 chr2L + chr2L_6048627_6048693;chr2L_6048631_6048693 chr2L_6048635_6048693 chr2L_6048694_6048702;chr2L_6048512_6048626 33.33 33.33 41.67 39.13 33.33 36.36 33.33 32.00 38.71 NA 41.67 33.33 35.71 30.00 40.00 35.48 38.46 36.00 35.29 32.26 35.29 31.82 30.00 27.27 NA 30.00 28.57 50.00 37.50 25.00 25.00 40.00 27.27 32.00 33.33 36.36 33.33 28.57 31.82 25.00 30.00 28.57 45.45 30.00 25.00 23.08 44.44 23.08 34.78 28.57 31.25 30.00 25.00 33.33 35.29 36.36 25.00 28.57 K intron_retention beta-Spec chrX + chrX_17561772_17562139 chrX_17561771_17561772;chrX_17562139_17562140 chrX_17561603_17561771;chrX_17562140_17562147 26.66 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 11.76 NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA 33.33 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG1927,RI_chr3L_1967428_1967489,RI_chr3L_1967503_1967958,RI_chr3L_1967503_1968077 chr3L - chr3L_1967503_1969599 chr3L_1967503_1967958 chr3L_1967490_1967502;chr3L_1969600_1970134 1.10 0.00 1.45 0.89 0.00 1.82 0.95 0.85 1.49 0.00 0.00 1.69 1.35 0.00 0.00 1.03 1.54 0.00 0.00 1.28 0.00 0.00 0.00 1.25 0.00 1.37 1.32 2.33 0.00 1.61 1.10 1.96 0.00 0.89 2.04 1.61 0.00 0.00 1.47 2.15 1.59 1.31 1.61 1.37 1.25 1.15 1.27 1.67 1.63 0.00 1.32 0.00 0.00 0.00 1.12 0.00 0.00 1.09 K cassette katanin-60 chr3R - chr3R_1056348_1057778 chr3R_1056348_1056714;chr3R_1057036_1057778 chr3R_1056715_1057035 chr3R_1055744_1056347;chr3R_1057779_1057940 97.22 97.67 97.22 70.69 96.77 90.62 97.67 86.79 98.84 100.00 93.75 88.89 87.88 96.15 100.00 97.56 100.00 97.30 87.88 95.10 87.50 81.36 98.39 98.08 96.97 97.06 97.83 96.77 91.67 94.12 97.22 100.00 93.33 98.08 97.22 97.44 98.39 97.73 98.21 94.74 96.55 98.48 90.32 95.35 97.87 95.92 97.50 98.28 94.74 98.31 92.73 97.14 100.00 96.55 97.73 100.00 100.00 100.00 K intron_retention CG15111 chr2R + chr2R_15026855_15027198 chr2R_15026854_15026855;chr2R_15027198_15027199 chr2R_15026788_15026854;chr2R_15027199_15027317 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 3.85 NA NA 6.06 NA NA 0.00 6.67 NA NA 0.00 3.45 NA NA 4.00 0.00 12.50 NA 0.00 NA NA NA 0.00 NA NA 3.45 NA NA 0.00 NA 8.33 NA NA 4.17 NA 7.69 NA NA NA NA 6.45 8.33 NA 0.00 NA 7.69 0.00 0.00 0.00 NA K alternative_acceptor Zyx102EF,I_chr4_1078380_1078835,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1078644_1078835;chr4_1078778_1078835;chr4_1078782_1078835 chr4_1078666_1078835 chr4_1078836_1078848;chr4_1078433_1078643 37.50 38.89 37.50 37.78 30.00 46.67 23.26 43.48 31.71 50.00 25.00 42.50 40.00 33.33 23.53 34.04 31.25 33.33 44.44 30.00 28.57 50.00 36.84 50.00 11.11 30.00 35.71 42.86 20.00 44.44 33.33 30.00 42.86 22.50 33.33 27.27 25.00 57.14 30.77 41.67 50.00 39.47 27.27 39.13 37.50 42.86 50.00 46.15 33.33 41.67 35.29 25.00 46.15 41.18 38.89 43.75 35.00 41.38 K intron_retention CG6650 chr3L + chr3L_14025471_14025524 chr3L_14025470_14025471;chr3L_14025524_14025525 chr3L_14025143_14025470;chr3L_14025525_14025743 1.09 1.46 1.15 0.79 2.11 0.00 1.02 2.21 1.45 3.64 0.00 1.12 0.00 0.00 1.90 0.00 2.53 1.06 0.00 2.96 0.00 2.94 1.97 1.11 0.00 0.00 2.53 0.00 0.00 0.00 0.00 2.50 1.12 1.80 0.00 2.80 0.41 1.09 1.67 2.07 0.00 2.22 0.00 1.32 4.55 4.26 0.00 0.00 2.84 0.00 2.21 0.00 0.00 2.33 0.00 0.98 4.21 0.00 K intron_retention CG10026 chr2L + chr2L_19455858_19456408 chr2L_19455857_19455858;chr2L_19456408_19456409 chr2L_19455678_19455857;chr2L_19456409_19456568 58.12 NA NA 60.00 NA NA NA 56.25 45.45 NA NA 53.85 46.15 NA 70.00 90.00 NA NA NA 38.89 NA NA NA NA NA NA NA NA NA NA NA NA NA 70.00 NA NA NA NA NA NA NA 43.75 NA NA NA NA NA NA 71.43 NA NA NA NA NA 63.64 NA NA NA K intron_retention CG1407,RI_chr2R_5918952_5919093 chr2R - chr2R_5917764_5918589 chr2R_5917763_5917764;chr2R_5918589_5918590 chr2R_5917094_5917763;chr2R_5918590_5918719 0.64 1.68 4.05 5.21 1.79 1.61 2.70 5.00 0.00 0.00 0.00 1.36 5.00 0.00 0.00 4.60 0.00 0.00 0.00 3.85 0.00 1.25 1.29 1.29 0.00 0.00 4.76 5.41 0.00 0.00 0.00 0.00 2.70 0.00 3.12 0.88 0.64 0.00 1.07 2.31 0.00 2.16 0.00 0.78 0.00 1.39 0.00 0.00 1.90 0.00 1.47 0.00 0.00 0.92 1.75 0.00 0.00 0.00 K intron_retention katanin-60 chr3R - chr3R_1054559_1055428 chr3R_1054558_1054559;chr3R_1055428_1055429 chr3R_1053999_1054558;chr3R_1055429_1055550 8.82 9.52 3.77 4.62 4.76 0.00 23.08 9.52 8.05 25.00 12.50 8.54 14.29 0.00 12.77 11.76 8.82 18.18 12.20 7.61 5.71 8.45 7.41 7.89 15.00 9.30 12.96 10.81 23.53 4.65 4.17 8.82 10.53 8.22 13.16 7.14 3.70 10.20 9.46 11.29 26.09 10.13 5.26 10.53 11.76 8.33 10.71 12.50 8.54 6.25 5.97 11.43 5.88 7.32 4.08 9.62 8.51 7.41 K alternative_acceptor CG14868,CG6136 chr3R - chr3R_11195671_11196040 chr3R_11195986_11196040 chr3R_11196041_11196089;chr3R_11195435_11195670 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 K intron_retention CG16971,CG33229,I_chr3L_225856_225909,RI_chr3L_225919_226004,I_chr3L_229245_230186 chr3L + chr3L_224184_224972 chr3L_224183_224184;chr3L_224972_224973 chr3L_224174_224183;chr3L_224973_225140 11.83 11.83 13.36 64.25 9.95 10.84 8.70 7.75 8.10 9.91 6.40 7.94 8.63 7.25 9.73 21.26 7.21 6.59 8.13 5.81 6.24 8.37 23.64 23.53 18.75 23.50 45.95 34.21 24.48 10.18 7.58 15.33 10.73 9.15 15.74 53.85 10.45 15.49 13.90 9.49 18.92 7.27 11.31 12.02 15.45 13.38 20.00 7.58 10.50 23.94 28.57 14.17 13.27 29.41 6.87 20.31 27.12 12.60 K intron_retention CG31211 chr3R + chr3R_7776077_7776148 chr3R_7776076_7776077;chr3R_7776148_7776149 chr3R_7775411_7776076;chr3R_7776149_7776506 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 K intron_retention Galpha49B,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8505646_8505947 chr2R_8505645_8505646;chr2R_8505947_8505948 chr2R_8505492_8505645;chr2R_8505948_8505993 0.00 0.00 0.00 2.90 0.00 0.00 3.17 0.00 1.72 NA 0.00 2.33 0.00 0.00 0.00 2.74 0.00 0.00 0.00 0.00 0.00 NA 3.45 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 9.09 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 11.76 0.00 0.00 NA NA 2.33 0.00 6.67 0.00 K intron_retention CG12004 chr3L + chr3L_1573765_1573993 chr3L_1573764_1573765;chr3L_1573993_1573994 chr3L_1573680_1573764;chr3L_1573994_1574736 0.00 0.00 0.00 0.36 0.00 0.00 1.27 0.00 0.24 0.00 0.00 0.67 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG2017 chr3R - chr3R_1686127_1687468;chr3R_1686127_1687891;chr3R_1686127_1687510 chr3R_1686127_1688092 chr3R_1685454_1686126;chr3R_1688093_1688097 0.00 0.00 0.00 1.67 2.70 2.94 0.00 1.69 1.12 0.00 0.00 0.00 0.00 0.00 0.00 2.04 3.12 2.33 2.08 0.00 2.27 1.18 1.25 1.56 0.00 0.00 1.27 0.00 1.27 0.00 0.00 0.00 1.64 1.59 0.00 0.00 0.00 1.61 0.00 0.00 0.00 1.22 0.00 1.54 2.13 1.69 0.00 3.85 0.00 0.00 0.00 0.00 5.26 0.00 2.04 0.00 0.00 0.00 K jcn_only_AA Aats-gly,CG6854 chr3L + chr3L_15088286_15088373 chr3L_15088286_15088354 chr3L_15088282_15088285;chr3L_15088374_15090790 1.23 1.16 2.13 0.50 2.08 0.72 1.62 2.01 1.03 3.26 1.52 2.54 3.61 0.98 0.00 0.64 0.00 0.00 1.23 1.16 0.83 2.62 4.08 2.38 0.00 0.76 4.76 2.70 1.32 1.32 4.24 0.47 1.79 4.06 0.00 3.96 0.00 0.00 1.06 0.59 0.00 0.67 3.96 0.60 1.02 1.61 2.08 1.02 1.09 0.00 5.00 1.47 1.20 0.00 1.66 1.96 2.27 1.41 K alternative_acceptor CG40351 chr3LHet + chr3LHet_594695_594779;chr3LHet_594695_594765 chr3LHet_594695_594756 chr3LHet_594687_594694;chr3LHet_594780_595060 63.34 NA NA 81.82 NA NA NA 60.00 66.67 NA NA NA NA NA NA NA 57.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA K alternative_donor CG2258,I_chrX_7993647_7995101,I_chrX_7993647_7995119,I_chrX_7993650_7995126,I_chrX_7994188_7995101 chrX - chrX_7993650_7995101;chrX_7993650_7995119 chrX_7993650_7995978 chrX_7993643_7993649;chrX_7995979_7996028 20.00 20.00 20.00 0.00 20.00 25.00 20.00 27.27 11.11 NA 0.00 23.08 40.00 20.00 16.67 44.44 20.00 20.00 14.29 26.67 20.00 33.33 64.29 16.67 50.00 20.00 14.29 33.33 0.00 20.00 25.00 NA NA 27.27 33.33 0.00 40.00 50.00 33.33 40.00 20.00 11.11 20.00 0.00 NA 12.50 40.00 25.00 26.67 42.86 33.33 0.00 50.00 16.67 33.33 37.50 20.00 14.29 K intron_retention B4,I_chr2L_13547304_13549131 chr2L - chr2L_13506684_13508620 chr2L_13506683_13506684;chr2L_13508620_13508621 chr2L_13502543_13506683;chr2L_13508621_13509104 6.37 6.67 12.50 4.76 6.67 NA 11.11 5.26 0.00 0.00 NA 5.00 11.76 7.69 13.04 11.11 0.00 0.00 NA 0.00 NA 6.06 10.71 0.00 NA NA NA 13.79 NA NA NA NA 0.00 0.00 6.67 0.00 4.00 14.29 0.00 0.00 NA 5.26 NA 8.33 NA NA NA 0.00 15.00 12.50 7.69 14.29 NA NA NA NA NA 13.33 K alternative_acceptor CG2144 chr2R + chr2R_3409187_3409246 chr2R_3409187_3409225 chr2R_3408456_3409186;chr2R_3409247_3410051 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K intron_retention I_chr2L_19388570_19389922,CG17544 chr2L - chr2L_19393657_19398346 chr2L_19393656_19393657;chr2L_19398346_19398347 chr2L_19393497_19393656;chr2L_19398347_19398401 8.93 7.14 3.70 8.57 13.33 13.64 11.54 9.09 10.53 8.33 12.50 7.78 14.29 3.64 6.38 11.70 13.79 4.17 4.65 8.93 5.00 25.00 10.87 10.42 18.75 5.41 27.27 10.53 15.79 5.56 4.84 5.26 7.89 9.23 7.55 11.43 15.62 13.51 9.76 7.48 6.35 10.26 2.56 10.17 3.23 4.62 6.25 4.50 7.08 12.00 14.58 15.15 11.11 0.00 11.48 7.32 6.82 4.65 K jcn_only_AA CG14619,RI_chrX_21860097_21868647,I_chrX_21865109_21865522,I_chrX_21869837_21869915 chrX + chrX_21867359_21868000 chrX_21867359_21867984 chrX_21867326_21867358;chrX_21868001_21868211 4.55 5.17 5.00 7.41 2.78 5.36 3.51 1.89 6.82 1.56 0.00 4.58 NA 3.57 2.22 4.76 NA 4.35 2.86 5.07 1.92 9.84 0.86 4.12 4.26 3.03 7.32 8.82 2.50 5.13 7.69 9.68 9.30 2.22 4.17 5.62 5.07 1.10 3.97 10.13 NA 5.74 7.14 5.26 1.82 3.70 6.38 4.55 4.96 6.00 5.13 2.22 4.69 0.00 0.00 3.51 0.00 4.55 K jcn_only_AD Sox14 chr2R + chr2R_19868269_19871066 chr2R_19868315_19871066 chr2R_19871067_19871533;chr2R_19867418_19868268 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.95 0.00 2.08 4.00 0.00 3.12 0.00 6.00 2.17 0.00 4.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 2.08 3.12 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 K intron_retention CG7920,I_chr3R_25837330_25837394 chr3R - chr3R_25837784_25840536 chr3R_25837783_25837784;chr3R_25840536_25840537 chr3R_25837391_25837783;chr3R_25840537_25840959 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.38 0.00 K intron_retention l(3)L1231 chr3R - chr3R_10471120_10471241 chr3R_10471119_10471120;chr3R_10471241_10471242 chr3R_10471018_10471119;chr3R_10471242_10472386 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor cmet chr2L - chr2L_11262421_11262485 chr2L_11262430_11262485 chr2L_11262486_11262560;chr2L_11262244_11262420 94.28 92.86 100.00 96.88 91.67 92.86 96.55 92.68 93.18 NA 93.33 95.00 100.00 93.33 85.71 95.45 93.33 94.12 91.18 98.18 93.75 100.00 100.00 100.00 NA 95.24 100.00 NA 93.33 94.74 90.91 94.12 96.00 92.16 92.86 100.00 94.44 90.91 90.00 94.44 93.75 100.00 100.00 100.00 94.44 88.24 96.30 95.24 97.92 94.12 100.00 100.00 100.00 91.67 89.29 88.89 83.33 83.87 K alternative_acceptor gig,I_chr3L_20128721_20128786 chr3L + chr3L_20128721_20128786 chr3L_20128721_20128777 chr3L_20128621_20128720;chr3L_20128787_20128886 100.00 100.00 NA 100.00 NA NA 91.67 91.67 100.00 NA NA 93.75 NA NA 100.00 87.50 100.00 NA NA 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 90.91 NA 100.00 100.00 100.00 100.00 100.00 NA 95.00 NA 93.75 NA NA NA NA 92.86 100.00 93.33 100.00 NA NA 100.00 100.00 100.00 NA K intron_retention CG2017 chr3R - chr3R_1685243_1685453 chr3R_1685242_1685243;chr3R_1685453_1685454 chr3R_1685182_1685242;chr3R_1685454_1686126 1.61 0.00 0.00 6.06 0.00 1.72 0.00 1.64 1.75 0.00 0.00 1.75 5.00 0.00 0.00 2.38 0.00 0.00 3.57 2.34 0.00 0.90 2.67 0.92 0.00 0.00 3.12 3.50 2.75 1.31 2.86 1.49 0.98 4.41 0.00 3.33 1.52 0.00 0.00 0.98 2.74 2.54 5.56 2.56 2.17 1.18 2.27 1.21 6.67 2.63 2.68 1.89 0.00 2.56 1.61 1.02 3.64 0.00 K cassette CG4896,REI_chr2L_1179197_1179859,I_chr2L_1191535_1191648 chr2L + chr2L_1179197_1179859 chr2L_1179197_1179451;chr2L_1179526_1179859 chr2L_1179452_1179525 chr2L_1179127_1179196;chr2L_1179860_1179937 63.07 71.43 72.22 34.62 69.23 64.29 46.15 52.17 66.67 44.44 50.00 64.00 80.00 77.78 57.89 90.48 57.14 71.43 56.25 65.38 77.78 73.33 65.38 50.00 53.33 53.85 81.82 92.31 73.33 66.67 43.18 77.78 52.94 61.54 69.23 13.04 44.12 75.00 64.00 71.88 38.46 64.29 41.18 59.09 63.64 66.67 58.33 52.38 54.29 69.23 60.71 81.82 62.50 55.56 60.00 52.94 NA 33.33 N intron_retention HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13164727_13165514 chrX_13164726_13164727;chrX_13165514_13165515 chrX_13165515_13165622 35.21 NA NA NA NA NA 43.75 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 26.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor dwg,RI_chrX_2622297_2622355,RI_chrX_2622297_2622430,RI_chrX_2622435_2622577,RI_chrX_2627170_2627263 chrX + chrX_2622297_2622355;chrX_2622297_2622430 chrX_2622297_2622577 chrX_2622197_2622296;chrX_2622578_2622677 83.33 91.43 90.91 75.76 89.47 87.10 63.16 86.36 83.67 83.33 89.29 91.53 76.19 96.55 85.71 82.50 85.00 76.19 84.85 85.71 77.27 33.33 86.96 76.47 83.33 74.07 76.74 88.24 86.84 84.85 54.69 85.71 75.00 76.74 76.92 66.67 84.44 88.00 80.65 82.14 81.82 85.45 82.14 81.08 83.72 82.76 80.00 86.79 83.64 83.33 79.17 73.33 94.29 78.95 83.87 82.86 88.24 92.73 K intron_retention Orc4 chr2R - chr2R_20684564_20684623 chr2R_20684563_20684564;chr2R_20684623_20684624 chr2R_20683262_20684563;chr2R_20684624_20684907 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 1.69 8.33 0.00 0.00 3.92 0.00 0.00 0.00 1.39 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 3.61 0.00 0.00 3.85 0.00 0.00 0.00 0.00 4.82 1.39 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 2.22 K jcn_only_AD Rad17,RI_chr3R_10488039_10488120 chr3R - chr3R_10488039_10488124 chr3R_10488039_10488120 chr3R_10487939_10488038;chr3R_10488125_10488220 19.26 NA NA NA NA NA NA 25.00 25.00 NA NA 0.00 NA NA NA 12.50 NA NA 20.00 18.52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.76 NA NA NA NA NA NA NA NA 23.08 NA NA NA NA NA NA NA NA NA K intron_retention Msp-300,I_chr2L_5197634_5197866 chr2L + chr2L_5196285_5197866 chr2L_5196284_5196285;chr2L_5197866_5197867 chr2L_5195979_5196284;chr2L_5197867_5197966 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.60 0.00 0.00 0.00 2.74 0.00 0.00 0.00 0.00 0.00 0.00 1.12 1.03 0.00 0.00 0.00 0.00 5.26 1.27 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 4.26 0.00 0.00 K jcn_only_AD mthl3 chr2R - chr2R_13338538_13338593;chr2R_13338538_13340067;chr2R_13338538_13339957;chr2R_13338538_13340007 chr2R_13338538_13340031 chr2R_13338407_13338537;chr2R_13340068_13340078 2.63 4.76 0.00 0.00 NA NA 6.45 6.00 4.08 NA 0.00 0.00 2.13 6.67 10.00 0.00 3.23 0.00 0.00 2.78 5.00 0.00 NA NA NA NA 0.00 NA NA NA 2.94 NA NA 2.00 3.85 NA NA NA NA NA NA 5.13 4.00 NA NA 0.00 NA 0.00 2.63 NA 0.00 NA NA NA 4.35 NA NA NA K jcn_only_AD CG10737 chr2R + chr2R_15062592_15063692;chr2R_15062814_15063692 chr2R_15062754_15063692 chr2R_15063693_15063852;chr2R_15062387_15062591 28.51 29.13 24.30 34.31 22.89 22.16 28.93 32.29 29.67 38.24 30.46 22.25 22.73 29.76 33.17 17.14 26.22 22.91 25.58 20.79 21.09 35.11 34.58 29.79 30.82 24.86 37.95 46.72 38.22 26.13 16.10 29.32 24.36 24.25 25.95 22.90 34.45 36.57 35.89 17.20 27.85 22.34 17.12 30.59 26.24 25.13 28.21 30.55 26.72 37.50 30.16 34.07 28.51 25.20 23.66 29.82 32.35 31.77 K alternative_donor CG42568,RI_chr2R_20046540_20046671,RI_chr2R_20046609_20046675,RI_chr2R_20046743_20046821 chr2R - chr2R_20046609_20046675;chr2R_20046609_20046671 chr2R_20046609_20046667 chr2R_20046509_20046608;chr2R_20046676_20046742 22.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 22.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette betaInt-nu chr2L + chr2L_21053362_21054993 chr2L_21053362_21053457;chr2L_21053645_21054993 chr2L_21053458_21053644 chr2L_21053285_21053361;chr2L_21054994_21055744 66.94 65.38 73.33 53.85 71.43 61.54 66.94 68.97 62.84 67.50 63.64 69.12 69.57 68.75 68.25 70.48 63.64 65.75 66.00 70.99 90.00 20.00 50.00 73.53 58.70 56.67 74.36 51.61 79.49 62.26 53.68 77.78 62.50 66.29 53.85 62.16 76.19 56.67 75.00 55.56 64.10 72.00 68.09 75.00 75.00 64.10 68.97 76.00 59.81 60.00 67.95 56.41 69.44 62.50 64.00 80.00 68.52 78.57 K jcn_only_AA sda,I_chr3R_22742285_22742350,RI_chr3R_22750984_22752737 chr3R + chr3R_22742285_22750355 chr3R_22742285_22742350 chr3R_22742270_22742284;chr3R_22750356_22750983 0.00 0.00 0.00 0.00 4.35 0.00 0.00 2.56 1.52 0.00 NA 0.00 NA 3.33 0.00 0.00 0.00 0.00 0.00 6.06 0.00 1.82 0.00 1.75 0.00 0.00 0.00 0.00 NA 3.57 0.00 NA 0.00 0.00 7.14 0.00 2.38 0.00 2.17 0.00 NA 0.00 3.70 0.00 NA 2.94 3.33 0.00 4.76 14.81 0.00 0.00 NA NA 3.23 8.00 3.70 NA K intron_retention CG13373,CG32817 chrX + chrX_371965_372045 chrX_371964_371965;chrX_372045_372046 chrX_371640_371964;chrX_372046_372227 10.82 NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 25.00 NA NA 15.38 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 6.25 NA K intron_retention CG31637 chr2L + chr2L_6499820_6525367 chr2L_6499819_6499820;chr2L_6525367_6525368 chr2L_6498604_6499819;chr2L_6525368_6525550 0.59 0.58 0.57 0.00 0.00 0.00 1.67 1.03 1.41 0.00 8.97 1.68 2.04 0.00 1.81 0.00 0.00 0.00 0.00 0.71 3.38 0.00 0.50 0.00 0.00 0.00 3.36 5.62 15.07 0.00 0.00 0.00 1.14 2.11 0.00 0.00 0.00 1.45 0.00 1.95 0.00 1.60 2.06 0.00 0.00 1.59 0.00 1.12 0.65 1.54 2.01 5.63 1.15 0.81 0.59 3.54 0.81 0.00 K intron_retention CG15362,CG7289 chr2L + chr2L_1981833_1981885 chr2L_1981832_1981833;chr2L_1981885_1981886 chr2L_1981642_1981832;chr2L_1981886_1982101 0.00 0.00 0.00 2.70 5.00 0.00 3.45 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 4.00 0.00 0.00 4.35 NA 0.00 4.76 NA 0.00 0.00 2.56 0.00 0.00 2.86 0.00 12.50 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 2.17 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG12773 chrX - chrX_1247232_1247288 chrX_1247232_1247285 chrX_1246687_1247231;chrX_1247289_1248009 100.00 100.00 100.00 100.00 97.50 100.00 100.00 98.18 98.86 100.00 100.00 100.00 100.00 100.00 98.25 100.00 100.00 93.62 100.00 100.00 100.00 100.00 100.00 96.08 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.81 98.44 96.23 100.00 98.90 98.31 98.67 100.00 100.00 98.91 97.14 100.00 98.08 100.00 100.00 100.00 98.46 100.00 98.48 97.37 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CE_chrX_20766225_20927825,CG1529,RI_chrX_20902550_20902613 chrX - chrX_20902550_20902613 chrX_20902549_20902550;chrX_20902613_20902614 chrX_20902450_20902549;chrX_20902614_20902713 6.25 0.00 0.00 13.64 5.56 0.00 7.69 21.43 10.00 4.76 0.00 9.68 NA 13.33 5.56 0.00 6.67 13.79 0.00 0.00 0.00 6.52 5.88 0.00 10.53 0.00 0.00 12.50 12.00 5.88 27.78 0.00 6.25 0.00 0.00 16.67 3.92 0.00 6.67 2.38 0.00 6.45 NA 7.69 0.00 14.29 13.33 8.33 7.69 16.67 8.33 10.53 0.00 10.53 0.00 9.09 0.00 10.00 K intron_retention CG17265,CG3542,CG17219,RFI_chr2L_3030576_3030666,GABPI chr2L + chr2L_3023344_3023404 chr2L_3023343_3023344;chr2L_3023404_3023405 chr2L_3023243_3023343;chr2L_3023405_3023794 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 98.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 96.00 94.44 100.00 100.00 95.00 100.00 96.77 100.00 97.14 97.22 100.00 100.00 97.83 100.00 97.87 100.00 95.65 100.00 93.33 96.55 100.00 95.92 96.43 97.78 100.00 100.00 100.00 100.00 96.55 100.00 100.00 K intron_retention CG8617 chr2R - chr2R_10244456_10244640 chr2R_10244455_10244456;chr2R_10244640_10244641 chr2R_10243215_10244455;chr2R_10244641_10244845 8.33 13.04 12.50 4.76 NA NA 0.00 13.33 6.25 10.53 14.29 6.25 NA NA NA 12.50 NA 7.14 NA 9.62 NA 28.33 3.70 6.67 0.00 NA 17.65 30.43 9.09 9.09 0.00 15.00 19.23 7.69 10.53 14.29 5.26 3.45 7.32 12.20 12.50 5.88 NA 10.53 19.23 5.41 6.67 17.39 8.33 3.45 4.35 14.29 9.38 0.00 4.35 6.25 5.71 5.71 K jcn_only_AD CG17508,RI_chr2R_1496995_1497120 chr2R + chr2R_1496288_1496517;chr2R_1496337_1496517;chr2R_1496303_1496517 chr2R_1496341_1496517 chr2R_1496518_1496994;chr2R_1496153_1496287 0.42 1.49 0.78 0.59 0.00 0.00 0.00 0.00 0.71 3.70 0.00 0.42 1.05 0.00 0.00 0.00 0.00 1.14 0.59 0.48 2.63 0.00 0.00 0.00 2.60 0.00 1.02 5.41 13.04 0.00 2.67 0.00 0.00 0.45 0.00 1.08 0.00 0.00 0.00 0.00 4.17 0.56 0.00 1.89 0.00 0.89 1.25 0.00 1.13 1.14 0.81 1.32 0.00 0.00 0.00 1.22 0.00 0.81 K alternative_acceptor CG30372,RI_chr2R_4012976_4013037 chr2R - chr2R_4004526_4004669 chr2R_4004610_4004669 chr2R_4004670_4004789;chr2R_4003772_4004525 85.19 96.15 73.08 90.00 71.43 89.47 66.67 77.42 86.00 78.95 100.00 86.84 83.33 94.44 76.92 84.00 87.50 88.46 85.19 84.78 92.86 82.93 86.27 89.19 82.76 85.19 89.29 94.12 81.82 83.33 90.00 82.35 93.33 86.21 85.71 81.25 92.31 87.50 87.50 76.47 84.62 82.93 92.86 96.55 80.95 96.15 92.59 60.87 83.72 86.67 79.17 81.48 84.62 81.48 77.78 82.14 88.89 93.33 K alternative_donor Top2,I_chr2L_19452310_19453250,I_chr2L_19452316_19452538,I_chr2L_19452794_19453250 chr2L - chr2L_19452316_19453250 chr2L_19452316_19452538 chr2L_19452216_19452315;chr2L_19453251_19453350 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.48 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor pAbp,I_chr2R_14027838_14028996 chr2R + chr2R_14028922_14028996;chr2R_14028460_14028996 chr2R_14028464_14028996 chr2R_14028997_14029096;chr2R_14028264_14028459 35.71 42.86 NA 46.67 60.00 42.86 22.22 44.44 16.67 NA NA 33.33 50.00 33.33 NA 23.08 28.57 25.00 14.29 30.77 NA 36.36 50.00 50.00 NA 20.00 23.08 36.36 33.33 NA 40.00 NA 46.15 40.00 NA NA 33.33 NA 14.29 60.00 NA 30.00 NA 35.71 NA NA NA 50.00 30.00 NA NA NA NA NA 0.00 NA 40.00 42.86 K alternative_acceptor oho23B,I_chr2L_2856176_2856244,I_chr2L_2856573_2856630,RI_chr2L_2856673_2856772 chr2L + chr2L_2856176_2856246;chr2L_2856176_2856222 chr2L_2856176_2856218 chr2L_2856076_2856175;chr2L_2856247_2856287 0.00 0.00 0.03 0.02 0.00 0.00 0.00 0.02 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.08 0.04 0.10 0.00 0.00 0.17 0.61 0.10 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.04 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.04 0.00 0.02 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.03 0.00 K intron_retention Csk,I_chr3R_7463337_7463512,I_chr3R_7468917_7472437,I_chr3R_7468917_7472509,I_chr3R_7468928_7472509 chr3R - chr3R_7463337_7475806 chr3R_7463336_7463337;chr3R_7475806_7475807 chr3R_7463237_7463336;chr3R_7475807_7476396 0.00 0.00 0.00 3.70 1.72 0.00 4.11 4.00 3.91 0.00 0.00 2.20 0.00 1.72 3.12 2.90 0.00 3.70 2.78 0.76 0.00 3.03 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 2.61 0.00 1.54 0.00 0.00 1.89 6.32 0.00 0.00 1.61 2.67 0.00 0.00 0.00 2.20 3.15 5.00 3.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Crk,RI_chr4_231302_233315,I_chr4_231307_232253 chr4 + chr4_231307_233253 chr4_231307_232479;chr4_232609_233253 chr4_232480_232608 chr4_231208_231306;chr4_233254_233355 88.89 95.24 86.96 77.27 86.67 82.35 89.36 90.38 92.73 88.89 93.33 85.42 88.89 91.67 88.46 91.11 86.96 100.00 89.47 90.91 100.00 92.31 86.96 94.44 69.23 68.18 90.91 100.00 42.31 85.00 96.00 89.47 96.00 88.89 72.22 93.75 87.50 87.50 91.67 93.10 68.97 88.10 85.71 79.17 53.33 82.22 100.00 81.08 85.00 90.48 100.00 86.67 93.33 87.50 96.30 92.59 94.74 70.77 K jcn_only_AA step chr2L - chr2L_21741933_21742074 chr2L_21742009_21742074 chr2L_21742075_21742280;chr2L_21741795_21741932 100.00 98.39 98.53 100.00 100.00 100.00 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.91 100.00 97.96 100.00 98.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.97 K intron_retention Eph,I_chr4_631523_634240,I_chr4_631555_631910,I_chr4_631643_631910,I_chr4_632065_634240,I_chr4_632433_632707,I_chr4_632433_632988,I_chr4_639690_640473,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_631523_631910 chr4_631522_631523;chr4_631910_631911 chr4_631455_631522;chr4_631911_632010 4.35 7.14 5.88 26.32 NA 16.67 5.71 6.06 4.08 NA NA 4.76 0.00 3.85 0.00 4.84 0.00 0.00 5.26 5.26 NA NA 10.53 0.00 NA 20.00 0.00 NA NA NA 4.35 NA NA 6.67 0.00 NA NA NA NA 0.00 NA 3.03 0.00 22.22 NA NA NA 0.00 2.50 NA 0.00 NA NA NA 4.76 NA NA NA K intron_retention CG32521,I_chrX_21077138_21082106,I_chrX_21077612_21082713,EI_chrX_21080561_21082106,I_chrX_21080906_21082713,CREF_chrX_21082827_21152068,EF_chrX_21094675_21152068 chrX - chrX_21077612_21082106 chrX_21077611_21077612;chrX_21082106_21082107 chrX_21077512_21077611;chrX_21082107_21082206 4.91 3.59 7.20 3.42 3.82 5.71 23.40 4.14 6.65 5.00 8.05 7.46 2.47 6.14 5.23 12.35 8.27 11.90 10.81 4.02 24.24 2.86 4.56 6.33 5.10 2.90 4.02 6.47 6.41 4.78 5.13 4.79 3.14 5.77 3.57 3.78 4.60 5.22 4.91 8.12 4.38 4.47 7.69 8.38 3.35 4.46 3.93 7.02 5.86 3.72 5.29 3.54 2.45 4.81 5.35 2.42 4.19 3.31 K alternative_donor noncoding_7598,snoRNA:Me28S-A3407a chr2R + chr2R_13586950_13587362 chr2R_13586955_13587362 chr2R_13587363_13587402;chr2R_13586856_13586949 66.67 NA 50.00 63.16 NA NA 80.00 84.62 58.33 NA NA 66.67 NA 75.00 NA 63.33 NA NA 69.23 69.23 NA NA NA 63.64 50.00 NA 63.64 NA NA NA 62.00 NA NA 64.29 80.00 66.67 NA NA NA NA NA 69.23 77.78 NA NA 60.00 NA NA 55.88 85.71 85.71 NA NA NA NA 66.67 76.92 NA K cassette Eb1,RI_chr2R_2640290_2642206,I_chr2R_2640494_2642206,I_chr2R_2642491_2642549 chr2R + chr2R_2640290_2642206 chr2R_2640290_2640353;chr2R_2640494_2642206 chr2R_2640354_2640493 chr2R_2640190_2640289;chr2R_2642207_2642306 98.53 98.44 100.00 95.24 98.31 100.00 98.91 95.76 99.43 96.88 97.96 98.97 100.00 98.15 96.88 98.91 100.00 98.31 98.53 99.07 100.00 97.06 98.82 98.65 100.00 96.49 98.51 96.30 93.10 96.77 98.65 100.00 94.74 100.00 100.00 96.97 98.48 100.00 98.77 98.36 100.00 99.16 100.00 98.46 95.65 95.12 100.00 96.15 99.22 98.51 100.00 98.41 97.30 97.44 100.00 98.33 100.00 100.00 K intron_retention Ide,I_chr3L_20366301_20366354,I_chr3L_20368443_20368519 chr3L - chr3L_20368655_20368717 chr3L_20368654_20368655;chr3L_20368717_20368718 chr3L_20368520_20368654;chr3L_20368718_20368931 15.27 20.00 12.50 21.43 6.25 8.82 12.68 12.68 14.29 9.09 11.11 16.36 10.00 8.57 13.33 14.81 11.43 15.15 16.28 13.04 12.12 50.00 16.07 15.56 33.33 25.81 16.67 22.73 50.00 10.81 17.86 12.50 14.71 15.38 24.14 78.95 19.51 14.63 11.63 20.45 17.65 17.19 16.67 13.04 NA 17.24 16.00 19.51 19.05 18.92 17.74 13.64 13.33 33.33 12.20 12.82 12.12 10.00 K intron_retention CG3091,I_chrX_2147635_2147990 chrX - chrX_2146894_2146948 chrX_2146893_2146894;chrX_2146948_2146949 chrX_2146757_2146893;chrX_2146949_2147281 3.01 2.67 4.29 10.91 1.59 5.26 7.79 6.09 5.46 0.00 2.63 3.88 7.14 6.56 3.12 5.68 6.41 2.78 5.48 1.24 4.17 2.27 3.57 3.39 0.00 8.89 12.50 NA 0.00 0.00 4.00 5.71 0.00 1.89 0.00 0.00 5.19 0.00 2.04 7.02 0.00 6.10 0.00 0.00 2.00 2.22 0.00 0.00 3.85 5.13 3.70 5.00 0.00 2.90 1.05 3.30 2.70 0.00 K jcn_only_AD tsr,I_chr2R_19932706_19933121 chr2R - chr2R_19932706_19934188 chr2R_19932706_19933121 chr2R_19932606_19932705;chr2R_19934189_19934352 0.04 0.09 0.04 0.07 0.00 0.00 0.03 0.06 0.05 0.08 0.05 0.02 0.00 0.00 0.00 0.04 0.00 0.05 0.04 0.02 0.05 0.00 0.07 0.00 0.00 0.05 0.10 0.06 0.13 0.04 0.09 0.04 0.04 0.00 0.04 0.03 0.06 0.00 0.11 0.03 0.14 0.05 0.05 0.12 0.11 0.02 0.02 0.03 0.06 0.15 0.10 0.00 0.00 0.02 0.07 0.04 0.00 0.00 K alternative_acceptor CG11155,I_chr4_1151213_1151903,I_chr4_1152220_1152710,I_chr4_1152585_1152687 chr4 + chr4_1154699_1155719 chr4_1154699_1154777 chr4_1154501_1154698;chr4_1155720_1155720 18.18 25.00 NA 33.33 NA NA 10.00 25.00 15.38 NA NA 18.18 NA 28.57 NA 10.53 NA NA 11.11 16.67 NA NA NA NA NA NA NA NA NA NA 28.57 NA NA 14.29 NA 33.33 NA NA NA NA NA 18.18 NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA K multi_cassette Pk61C,CE_chr3L_129889_141769,I_chr3L_132531_133824,I_chr3L_133962_134014,I_chr3L_136336_137121,I_chr3L_136336_141563 chr3L + chr3L_129889_141769 chr3L_129889_135457;chr3L_135843_135966;chr3L_136336_141563;chr3L_141692_141769 chr3L_135458_135842;chr3L_135967_136335;chr3L_141564_141691 chr3L_129840_129888;chr3L_141770_141837 100.00 96.88 100.00 97.44 95.45 86.21 97.50 97.44 98.44 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 95.00 95.45 98.85 95.65 100.00 97.87 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 100.00 96.77 97.67 100.00 100.00 100.00 100.00 97.62 98.67 100.00 98.31 100.00 97.37 100.00 100.00 100.00 100.00 98.04 92.86 100.00 95.83 100.00 100.00 95.83 100.00 100.00 100.00 K intron_retention pAbp,I_chr2R_14027838_14028996 chr2R + chr2R_14032780_14032846 chr2R_14032779_14032780;chr2R_14032846_14032847 chr2R_14032472_14032779;chr2R_14032847_14034632 0.00 0.00 0.00 0.25 0.00 0.30 0.00 0.24 0.28 0.00 0.00 0.37 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.94 0.32 0.25 0.00 0.00 0.48 0.96 0.00 0.00 0.40 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.21 0.00 0.00 0.28 0.00 0.00 0.29 0.00 0.49 0.00 0.00 0.00 0.39 0.00 0.00 0.00 K alternative_donor Gs1l,I_chr2L_4456517_4456723,I_chr2L_4458058_4458120 chr2L - chr2L_4456521_4456723;chr2L_4456521_4456719 chr2L_4456521_4456725 chr2L_4456386_4456520;chr2L_4456726_4456801 40.00 25.00 44.44 38.89 40.00 44.44 25.00 23.53 43.24 NA 40.00 26.32 25.00 50.00 35.71 40.00 41.67 20.00 50.00 43.75 40.00 NA 55.56 50.00 14.29 33.33 40.00 NA 30.00 NA 21.05 33.33 50.00 44.00 NA 40.00 55.56 NA 30.77 47.37 64.71 28.00 40.00 43.75 38.89 47.06 NA 66.67 16.67 NA NA 25.00 NA 50.00 30.77 50.00 53.85 62.50 K alternative_acceptor CG8677 chr2L + chr2L_21223128_21223191 chr2L_21223128_21223170 chr2L_21222678_21223127;chr2L_21223192_21224563 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.17 0.00 5.26 NA 0.00 5.26 4.35 0.00 0.00 0.00 0.00 7.14 0.00 NA 2.56 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 1.92 0.00 NA 0.00 0.00 0.00 0.00 NA 2.56 0.00 0.00 NA 0.00 NA 2.94 0.00 NA 4.35 0.00 NA NA 0.00 NA NA NA K intron_retention CG10077,I_chr3L_6946805_6946872 chr3L - chr3L_6944303_6944366 chr3L_6944302_6944303;chr3L_6944366_6944367 chr3L_6942613_6944302;chr3L_6944367_6944545 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.81 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG1746,I_chr3R_27044771_27044867,I_chr3R_27044771_27044990,I_chr3R_27044771_27045027,RI_chr3R_27044771_27045110,I_chr3R_27044771_27045132,RI_chr3R_27044771_27045188,I_chr3R_27044771_27045193,RI_chr3R_27044771_27045268 chr3R - chr3R_27044771_27044867;chr3R_27044771_27045188;chr3R_27044771_27045257;chr3R_27044771_27045132;chr3R_27044771_27045027;chr3R_27044771_27045110;chr3R_27044771_27044831;chr3R_27044771_27044990 chr3R_27044771_27044895 chr3R_27044671_27044770;chr3R_27045258_27045273 2.63 1.90 2.09 1.59 0.89 1.62 2.16 1.42 2.11 8.33 1.95 1.72 2.63 2.08 1.47 3.02 2.51 0.75 1.20 2.34 2.97 1.55 24.00 25.45 20.83 2.67 22.50 9.52 2.96 5.44 1.56 1.70 3.41 0.81 11.39 5.88 19.74 20.00 14.52 2.95 3.87 1.32 1.56 1.27 1.52 4.42 18.18 3.63 1.60 21.28 14.71 20.83 2.49 21.88 1.59 16.07 18.95 0.36 K alternative_donor CG3558,RI_chr2L_2995071_2997790 chr2L + chr2L_2993464_2993544;chr2L_2993410_2993544;chr2L_2993444_2993544 chr2L_2993378_2993544 chr2L_2993545_2994408;chr2L_2993028_2993377 92.64 95.35 88.46 91.46 91.43 92.68 96.00 94.44 93.28 93.33 90.48 94.05 92.45 92.73 87.76 96.70 93.48 92.31 95.16 91.09 91.67 88.06 86.00 90.48 100.00 92.59 81.08 95.24 75.00 94.29 95.92 92.00 94.19 95.41 92.59 90.48 85.71 87.50 91.43 94.95 96.72 88.66 89.74 87.69 92.50 94.94 93.75 94.66 93.20 96.43 88.37 93.94 82.14 NA 89.83 100.00 96.00 95.04 K intron_retention NijA chr3L - chr3L_10688468_10688728 chr3L_10688467_10688468;chr3L_10688728_10688729 chr3L_10688432_10688467;chr3L_10688729_10688804 52.63 57.14 48.00 45.95 46.15 52.63 56.25 66.67 48.78 NA NA 51.85 NA 53.33 62.96 64.52 52.17 47.83 62.96 56.76 66.67 21.15 75.00 52.78 44.44 52.94 54.05 47.06 47.62 50.00 48.48 33.33 41.38 48.72 46.34 52.63 36.67 45.45 57.58 34.15 36.36 68.42 56.25 46.15 42.50 56.90 53.85 43.40 57.14 45.45 57.58 47.83 73.68 69.57 60.87 60.00 57.14 55.36 K jcn_only_AD CaMKI,I_chr4_466377_467256,I_chr4_466377_467726,I_chr4_467072_467446,I_chr4_467378_467424,RI_chr4_467374_467424,RI_chr4_467482_467543,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_467378_467446;chr4_467374_467446 chr4_467273_467446 chr4_467447_467481;chr4_467266_467272 2.35 NA NA NA NA NA 0.00 0.00 6.00 NA NA NA 0.00 4.55 NA 2.44 NA NA 0.00 2.27 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 2.70 NA NA NA NA NA 4.17 NA 3.45 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA 3.85 NA 4.35 NA K intron_retention nimC1,I_chr2L_13975880_13975977 chr2L - chr2L_13975880_13975977 chr2L_13975879_13975880;chr2L_13975977_13975978 chr2L_13975780_13975879;chr2L_13975978_13976066 0.00 NA 0.00 0.00 NA 0.00 5.26 0.00 5.26 NA 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA 5.71 NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 4.65 NA NA NA NA NA 4.35 NA NA NA K alternative_acceptor borr chr2L - chr2L_9252339_9252634 chr2L_9252351_9252634 chr2L_9252635_9253116;chr2L_9251942_9252338 81.48 76.60 77.78 67.86 93.33 93.33 84.62 73.33 84.85 82.35 NA 87.88 100.00 90.91 92.86 90.91 91.67 100.00 72.73 86.67 91.67 88.46 74.58 78.69 80.56 75.00 81.25 94.12 80.95 83.33 100.00 84.62 57.89 90.91 81.48 81.48 82.54 78.72 76.27 72.09 94.44 77.78 90.00 76.47 64.52 80.56 68.00 80.95 86.67 91.11 70.73 72.73 75.68 84.00 94.12 78.57 72.22 75.00 K intron_retention pix,I_chr3L_8967436_8967756 chr3L - chr3L_8965728_8965784 chr3L_8965727_8965728;chr3L_8965784_8965785 chr3L_8965146_8965727;chr3L_8965785_8966482 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.89 0.33 0.00 0.00 0.17 0.00 0.40 0.00 0.00 0.00 0.00 0.28 0.29 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.62 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.43 0.34 0.00 0.68 1.60 0.00 0.00 0.20 0.00 0.61 0.99 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 K jcn_only_AA l(2)NC136,I_chr2R_1545723_1546024 chr2R - chr2R_1545081_1545147;chr2R_1545087_1545147 chr2R_1545003_1545147 chr2R_1545148_1545722;chr2R_1544877_1545002 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.71 0.00 0.71 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 1.77 1.37 0.85 0.00 0.00 0.44 0.68 0.00 0.00 0.00 1.37 0.00 0.00 0.00 1.09 K intron_retention CG34394,I_chr2L_3365674_3365965 chr2L - chr2L_3361444_3362415 chr2L_3361443_3361444;chr2L_3362415_3362416 chr2L_3360996_3361443;chr2L_3362416_3362718 44.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 44.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG8461 chr3R - chr3R_10339143_10339203 chr3R_10339142_10339143;chr3R_10339203_10339204 chr3R_10338605_10339142;chr3R_10339204_10339362 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA 26.32 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA 0.00 NA K intron_retention Hexo1,F_chr3L_4292778_4292830 chr3L + chr3L_4289172_4289245 chr3L_4289171_4289172;chr3L_4289245_4289246 chr3L_4289050_4289171;chr3L_4289246_4289880 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 10.53 4.65 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045275_16045854;chr3L_16045275_16046111 chr3L_16045275_16046104 chr3L_16045255_16045274;chr3L_16046112_16046204 80.65 85.00 74.07 77.14 NA 95.45 78.57 94.12 79.37 NA 87.50 79.17 80.65 86.21 70.00 83.33 75.00 71.43 86.67 75.00 95.65 NA 85.19 85.00 NA 72.22 NA NA 85.19 NA 75.00 NA 83.33 82.00 NA 65.38 76.19 NA NA 96.00 NA 81.25 71.43 77.27 NA 80.00 NA 77.14 93.88 NA NA NA NA NA 89.19 NA NA NA K multi_cassette pyd,I_chr3R_4654041_4664113,I_chr3R_4749124_4756437 chr3R - chr3R_4654041_4664113 chr3R_4654041_4654556;chr3R_4656728_4657863;chr3R_4657997_4658075;chr3R_4658368_4658425;chr3R_4658667_4659696;chr3R_4659797_4659860;chr3R_4660010_4660078;chr3R_4660672_4660998;chr3R_4661233_4664113 chr3R_4654557_4656727;chr3R_4657864_4657996;chr3R_4658076_4658367;chr3R_4658426_4658666;chr3R_4659697_4659796;chr3R_4659861_4660009;chr3R_4660079_4660671;chr3R_4660999_4661232 chr3R_4653941_4654040;chr3R_4664114_4664213 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N alternative_donor noncoding_4622,CE_chr2R_2237053_2237111 chr2R - chr2R_2237036_2237090;chr2R_2237036_2237093 chr2R_2237036_2237086 chr2R_2236997_2237035;chr2R_2237094_2237159 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3838 chr2L + chr2L_9569199_9571476 chr2L_9569198_9569199;chr2L_9571476_9571477 chr2L_9568769_9569198;chr2L_9571477_9571753 0.00 0.00 0.00 3.23 NA NA 0.00 0.00 4.44 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 5.71 0.00 0.00 8.70 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG6729,I_chr2L_10742536_10742692,I_chr2L_10743767_10743821,E_chr2L_10745700_10745781,I_chr2L_10753685_10755903 chr2L - chr2L_10743767_10743821 chr2L_10743771_10743821 chr2L_10743822_10743872;chr2L_10743667_10743766 100.00 94.12 100.00 94.44 100.00 100.00 93.75 100.00 100.00 87.50 100.00 91.67 100.00 88.89 91.67 88.89 100.00 92.31 100.00 100.00 88.89 95.24 96.55 95.24 100.00 100.00 100.00 95.83 90.00 100.00 66.67 100.00 100.00 100.00 88.89 100.00 97.30 100.00 96.00 100.00 NA 100.00 87.50 100.00 NA NA 93.33 NA 100.00 92.86 90.48 90.00 100.00 100.00 100.00 93.33 100.00 NA K intron_retention l(2)05714,I_chr2L_4970785_4973718,RI_chr2L_4971343_4973718,CG8892 chr2L - chr2L_4971323_4973718 chr2L_4971322_4971323;chr2L_4973718_4973719 chr2L_4971243_4971322;chr2L_4973719_4973787 93.75 NA 70.00 100.00 100.00 NA 100.00 94.44 81.82 NA NA 100.00 100.00 100.00 90.00 96.00 NA 90.91 NA 94.74 90.00 NA 92.86 92.86 NA 88.89 90.00 100.00 NA 87.50 93.75 NA NA 78.57 88.89 NA NA NA NA 81.82 NA 94.12 NA NA NA 100.00 100.00 NA 94.74 100.00 88.89 NA NA 90.00 90.91 93.33 100.00 100.00 K jcn_only_AD eIF-1A,I_chr3R_14106104_14107415,I_chr3R_14106955_14107415 chr3R + chr3R_14100864_14107415;chr3R_14106955_14107415 chr3R_14106104_14107415 chr3R_14107416_14107515;chr3R_14100759_14100863 0.17 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.08 0.23 0.00 0.17 0.00 0.36 0.70 0.00 0.00 0.00 0.28 0.48 0.18 0.00 0.00 0.00 0.22 0.31 0.00 0.80 0.71 0.24 0.89 0.00 0.33 0.00 0.54 0.00 0.13 0.77 0.24 0.50 0.23 0.09 0.19 0.33 0.00 0.31 0.17 0.41 0.27 0.00 0.41 0.30 0.00 0.00 0.38 0.00 0.17 0.30 K intron_retention vlc chr2R + chr2R_1589894_1590371 chr2R_1589893_1589894;chr2R_1590371_1590372 chr2R_1589884_1589893;chr2R_1590372_1590451 54.55 NA 54.55 56.25 NA NA 41.18 42.11 73.33 NA 63.64 58.82 54.55 70.00 NA 60.87 NA 95.45 50.00 53.85 53.85 55.56 57.14 NA NA NA NA NA 41.67 NA NA NA NA 63.64 NA NA 46.15 NA NA 47.62 NA 45.00 NA 50.00 NA 42.86 NA 68.75 73.68 NA 60.00 60.00 NA NA 50.00 NA NA 33.33 K alternative_donor mfas,I_chr3R_7811954_7812017,I_chr3R_7818597_7818853,I_chr3R_7818607_7818853,RI_chr3R_7818607_7818970 chr3R - chr3R_7818607_7818970 chr3R_7818607_7818853 chr3R_7818507_7818606;chr3R_7818971_7818995 62.50 NA 45.45 60.00 NA NA 59.09 68.42 64.71 NA 83.33 62.50 66.67 60.00 54.55 77.78 69.23 NA 56.25 92.31 NA NA 71.43 NA NA NA NA 62.50 83.33 NA 72.73 NA NA 73.33 NA NA NA NA NA 41.67 NA 62.50 58.33 NA NA 85.71 NA 62.50 60.87 55.56 62.50 NA NA NA 69.23 NA NA 87.50 K cassette sw chrX - chrX_20101692_20104496;chrX_20101668_20104496;chrX_20101671_20105848;chrX_20101671_20104496 chrX_20101671_20103190,chrX_20101692_20103190,chrX_20101668_20103190;chrX_20103239_20104496,chrX_20103239_20105848 chrX_20103191_20103238 chrX_20101619_20101667;chrX_20105849_20105976 26.09 19.05 22.73 38.46 26.67 36.36 26.32 23.53 29.73 56.25 35.71 31.82 14.29 33.33 23.08 26.32 30.00 46.15 20.00 19.35 28.57 31.43 26.09 17.39 13.33 31.58 17.86 17.65 10.71 21.21 21.74 29.41 27.03 25.93 33.33 12.50 17.65 17.39 21.05 22.45 32.00 22.58 22.22 22.22 18.18 24.14 28.00 41.38 30.30 19.05 28.00 27.78 26.09 31.25 28.57 18.18 33.33 37.50 K intron_retention AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9008806_9008870 chrX_9008805_9008806;chrX_9008870_9008871 chrX_9008667_9008805;chrX_9008871_9009159 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL7A,I_chrX_6426455_6427156,I_chrX_6426579_6427002 chrX - chrX_6426579_6427156 chrX_6426578_6426579;chrX_6427156_6427157 chrX_6426523_6426578;chrX_6427157_6427194 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.03 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.40 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Sec16,I_chrX_12501913_12502010,I_chrX_12502899_12502973 chrX + chrX_12502899_12502970;chrX_12502899_12502967 chrX_12502899_12502973 chrX_12502799_12502898;chrX_12502974_12503073 0.68 3.85 1.56 1.90 0.00 0.00 0.00 1.06 0.00 1.54 0.00 0.00 1.89 0.00 2.94 1.03 0.00 0.00 0.00 3.31 0.00 1.33 0.00 0.00 0.00 4.35 0.00 0.00 2.63 1.10 1.85 1.25 0.83 0.93 0.00 1.92 0.00 0.00 0.00 1.23 1.16 3.36 0.00 1.37 0.98 0.68 0.00 2.00 0.91 0.00 0.00 0.00 2.86 0.00 1.16 1.69 0.00 0.00 K intron_retention CG30193,CG30190 chr2R + chr2R_18813008_18813071 chr2R_18813007_18813008;chr2R_18813071_18813072 chr2R_18812998_18813007;chr2R_18813072_18813135 80.43 78.95 75.00 71.70 86.96 86.96 83.33 69.23 87.67 81.82 90.91 86.54 87.50 82.76 95.83 80.43 73.08 96.15 91.67 89.74 95.24 84.85 72.73 58.62 100.00 87.88 80.95 71.43 94.12 70.83 79.49 75.00 75.00 77.78 79.17 84.62 80.00 66.67 75.00 83.87 94.74 84.31 82.14 82.61 94.74 78.79 80.00 96.43 80.00 74.07 78.26 66.67 78.57 76.47 75.00 80.00 62.50 96.00 K alternative_last_exon Ac76E,I_chr3L_19966672_19966735 chr3L + chr3L_19968576_19969190 chr3L_19968576_19968698 chr3L_19969191_19969433 chr3L_19968699_19968767 chr3L_19968471_19968575 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 NA 0.00 NA NA NA 0.00 0.00 NA NA K jcn_only_AA CG4699 chr3R + chr3R_11624200_11624445 chr3R_11624200_11624442 chr3R_11623809_11624199;chr3R_11624446_11624758 82.37 78.67 80.56 80.00 NA 86.21 71.43 84.31 77.01 81.82 83.33 86.90 73.53 78.79 87.23 84.09 89.66 77.78 78.57 81.73 66.67 84.47 78.71 77.27 82.35 79.55 81.54 80.00 83.46 82.39 85.37 70.83 83.62 83.33 82.93 81.44 83.54 82.54 83.33 87.50 79.76 75.00 92.11 77.48 89.71 78.82 84.48 84.75 78.67 82.50 83.45 79.17 78.57 83.13 76.47 82.65 87.69 86.08 K intron_retention CG5044,I_chr3R_11188256_11188309 chr3R + chr3R_11184530_11184787 chr3R_11184529_11184530;chr3R_11184787_11184788 chr3R_11184261_11184529;chr3R_11184788_11184982 98.36 100.00 100.00 95.60 97.06 94.44 98.82 97.09 99.10 94.74 100.00 100.00 98.33 97.83 95.74 100.00 100.00 97.44 98.11 99.09 100.00 97.62 100.00 98.31 97.67 100.00 98.57 96.00 100.00 97.78 97.56 100.00 98.28 100.00 100.00 100.00 98.15 100.00 96.36 100.00 100.00 98.78 97.56 98.18 97.37 98.53 98.21 96.55 96.39 98.39 98.46 100.00 96.55 96.77 100.00 98.36 98.41 97.44 K intron_retention CG8790 chr3R + chr3R_9190952_9193460 chr3R_9190951_9190952;chr3R_9193460_9193461 chr3R_9190661_9190951;chr3R_9193461_9193883 0.00 0.00 0.00 2.70 0.00 0.00 3.39 3.54 0.91 0.00 6.25 3.91 1.67 0.00 0.00 1.06 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 2.78 1.67 0.00 0.93 1.89 0.00 0.95 0.00 0.00 0.00 2.90 1.97 0.00 0.00 0.00 1.87 0.00 2.70 2.65 2.60 2.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA bwa,I_chr2L_20069515_20073377,I_chr2L_20073310_20073377 chr2L + chr2L_20069515_20073377 chr2L_20069515_20072353 chr2L_20069415_20069514;chr2L_20073378_20073477 98.44 100.00 96.43 87.60 100.00 100.00 98.35 93.46 98.87 98.57 97.01 96.53 100.00 96.10 94.87 100.00 97.14 94.44 93.55 99.06 98.46 97.88 98.44 97.54 100.00 95.12 98.15 99.07 99.02 100.00 97.01 98.18 98.31 98.25 98.46 91.36 99.17 98.88 98.52 99.34 98.75 99.43 98.04 98.98 98.02 96.83 99.23 97.00 98.66 98.66 100.00 97.06 100.00 98.94 96.39 97.85 98.29 100.00 K intron_retention RpL10Ab,snoRNA:Psi18S-920 chr3L + chr3L_11815991_11816299 chr3L_11815990_11815991;chr3L_11816299_11816300 chr3L_11815955_11815990;chr3L_11816300_11816370 0.32 0.38 0.00 0.25 0.00 0.39 0.33 0.28 0.63 0.36 0.38 0.52 0.83 1.01 0.40 0.35 0.16 0.45 0.10 0.19 0.00 0.14 3.49 3.90 5.56 0.24 23.53 1.91 0.00 0.00 0.13 0.12 0.00 0.17 1.16 0.83 2.00 3.12 6.00 0.06 0.12 0.49 0.31 0.00 0.04 0.20 0.00 0.00 0.33 6.67 7.58 0.00 0.14 NA 0.18 3.57 4.60 0.06 K jcn_only_AD CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_239007_239078 chr4_239007_239071 chr4_238874_239006;chr4_239079_239137 97.62 100.00 97.30 97.48 95.12 98.59 97.93 97.32 97.63 95.83 98.04 98.13 98.98 94.00 97.41 97.73 100.00 98.28 94.90 96.95 98.08 96.30 95.70 97.26 93.62 97.62 96.47 97.30 91.38 92.77 96.79 98.36 96.72 98.25 98.91 100.00 98.36 96.72 100.00 99.20 95.40 98.56 96.20 96.61 98.46 96.79 100.00 100.00 98.43 97.87 99.34 100.00 96.00 96.97 97.52 98.97 96.53 97.72 K intron_retention Phm,RI_chr2R_19875078_19875636 chr2R - chr2R_19873918_19874859 chr2R_19873917_19873918;chr2R_19874859_19874860 chr2R_19873785_19873917;chr2R_19874860_19874932 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.66 0.00 2.04 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Trf2,I_chrX_8318346_8318408 chrX + chrX_8303398_8304309 chrX_8303397_8303398;chrX_8304309_8304310 chrX_8303319_8303397;chrX_8304310_8304722 83.01 58.33 63.64 75.00 NA 91.67 61.29 73.08 72.73 NA NA 80.77 64.29 61.11 84.62 57.58 69.23 60.00 85.00 80.00 NA 57.14 93.33 88.89 NA 81.82 NA NA 91.67 NA 91.67 100.00 80.00 66.67 87.50 90.00 NA NA 90.00 95.00 63.64 79.41 75.00 55.00 100.00 94.44 100.00 86.36 70.97 84.62 NA 75.00 90.00 100.00 84.21 92.86 94.74 90.00 K intron_retention CG40351,CREFI_chr3LHet_606442_607073 chr3LHet + chr3LHet_600124_600179 chr3LHet_600123_600124;chr3LHet_600179_600180 chr3LHet_599490_600123;chr3LHet_600180_600636 0.00 0.00 0.00 33.33 NA NA 5.26 4.55 12.20 NA NA 12.90 0.00 NA NA 6.25 0.00 NA 5.56 7.69 NA NA 7.41 NA 0.00 NA 4.17 8.33 NA 0.00 NA 7.69 NA 0.00 NA 6.67 0.00 NA NA 5.00 0.00 0.00 NA 7.41 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA K alternative_acceptor CG42533,F_chr2L_7476906_7476978 chr2L - chr2L_7480324_7480560 chr2L_7480327_7480560 chr2L_7480561_7480896;chr2L_7478851_7480323 72.65 85.71 73.33 73.08 NA 53.85 60.87 73.08 78.12 70.00 NA 83.33 71.43 73.33 86.67 88.89 90.91 72.22 84.62 71.05 61.54 72.22 80.95 65.00 90.91 66.67 65.00 88.89 60.00 76.92 61.11 NA 68.75 68.00 73.33 88.89 69.57 88.89 81.25 75.00 NA 75.86 90.91 64.71 NA 66.67 NA 70.59 62.16 60.00 83.33 69.23 NA NA 60.87 NA NA NA K alternative_acceptor Gap1 chr3L - chr3L_9833423_9833611 chr3L_9833437_9833611 chr3L_9833612_9834663;chr3L_9832217_9833422 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA K intron_retention CG42382,Rme-8 chr2R - chr2R_5054825_5054882 chr2R_5054824_5054825;chr2R_5054882_5054883 chr2R_5054127_5054824;chr2R_5054883_5054973 28.57 NA NA NA NA NA 28.57 33.33 14.29 NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA 57.14 NA NA NA NA NA NA NA NA 31.25 33.33 NA NA 0.00 NA NA NA 15.38 NA NA NA NA NA NA NA 0.00 NA 50.00 K alternative_acceptor CG17078 chr2L - chr2L_276898_276958 chr2L_276904_276958 chr2L_276959_277212;chr2L_276739_276897 100.00 100.00 91.67 94.44 100.00 90.00 93.33 100.00 96.77 NA 100.00 100.00 100.00 100.00 100.00 100.00 90.91 91.67 92.31 100.00 91.67 100.00 100.00 90.91 NA 100.00 93.33 100.00 100.00 93.33 100.00 100.00 96.55 94.12 90.00 100.00 100.00 NA 92.86 95.00 92.31 100.00 100.00 100.00 93.33 90.91 NA 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 K alternative_donor fwd,RI_chr3L_319514_319746 chr3L - chr3L_314318_319746 chr3L_314318_318990 chr3L_313024_314317;chr3L_319747_319846 62.96 53.57 77.42 60.98 65.22 65.38 69.57 69.84 63.77 51.85 47.06 66.07 63.33 61.29 62.96 49.15 60.00 56.00 59.52 63.77 54.17 67.57 57.14 70.00 70.00 88.24 57.89 38.46 60.87 44.44 47.50 72.73 46.34 60.00 54.29 76.19 68.18 58.82 76.47 64.15 80.00 66.67 75.00 60.00 83.33 73.33 40.00 73.53 59.42 50.00 61.36 65.52 66.67 83.33 62.22 64.29 60.00 46.67 K alternative_donor sar1,I_chr3R_18185148_18185246 chr3R + chr3R_18182521_18183252;chr3R_18182490_18183252;chr3R_18182467_18183252 chr3R_18182472_18183252 chr3R_18183253_18183393;chr3R_18182460_18182466 84.31 86.57 82.17 86.23 77.91 81.91 84.14 83.51 83.48 92.31 84.21 82.11 84.62 84.88 87.79 83.68 86.75 88.54 80.26 85.95 83.33 87.10 82.76 88.64 76.92 84.91 79.49 84.00 84.85 75.76 80.00 86.79 85.42 80.11 86.49 82.86 87.27 88.24 92.19 84.31 81.82 85.57 89.13 80.28 83.33 83.10 84.06 74.47 86.81 93.18 83.87 82.22 83.93 85.71 85.62 87.80 87.95 86.49 K alternative_donor CG11309,I_chr3L_21297192_21297708 chr3L - chr3L_21297192_21297389;chr3L_21297192_21297487 chr3L_21297192_21297542 chr3L_21297092_21297191;chr3L_21297543_21297554 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.67 NA 0.00 NA NA 0.00 0.00 11.11 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 20.00 NA NA 0.00 NA 0.00 8.33 20.00 NA NA NA NA 0.00 0.00 0.00 0.00 K jcn_only_AA Bin1,I_chr3R_12012377_12012433 chr3R - chr3R_12012361_12012433 chr3R_12012377_12012433 chr3R_12012434_12012533;chr3R_12012277_12012360 0.00 0.00 0.00 0.34 0.00 0.47 0.29 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.20 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.17 0.00 0.00 0.11 0.00 0.59 0.37 0.00 0.00 0.71 0.00 0.33 0.30 0.00 0.00 0.13 0.00 0.00 0.11 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention osa chr3R - chr3R_13520018_13521644 chr3R_13520017_13520018;chr3R_13521644_13521645 chr3R_13519858_13520017;chr3R_13521645_13521833 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Dsp1,I_chrX_16231287_16231413 chrX + chrX_16228273_16228333;chrX_16227804_16228333;chrX_16227677_16228333;chrX_16227797_16228333 chrX_16227752_16228333 chrX_16228334_16228446;chrX_16227667_16227676 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3R_11091413_11092154,CG4334 chr3R + chr3R_11095328_11095458 chr3R_11095327_11095328;chr3R_11095458_11095459 chr3R_11095126_11095327;chr3R_11095459_11095837 10.53 NA NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Atg18,I_chr3L_8182683_8182941 chr3L + chr3L_8180503_8180578 chr3L_8180502_8180503;chr3L_8180578_8180579 chr3L_8180464_8180502;chr3L_8180579_8180676 57.14 42.86 63.64 53.33 NA NA 88.24 42.86 44.00 NA NA 57.14 NA NA 33.33 58.33 63.64 NA 40.00 62.50 NA 77.42 61.11 26.67 53.33 77.78 58.82 88.89 54.55 NA 66.67 NA NA 66.67 NA 95.83 57.14 NA 40.00 56.25 NA 40.74 NA 72.73 50.00 60.00 NA 63.64 50.00 71.43 52.17 35.71 36.36 NA 61.54 50.00 40.00 NA K jcn_only_AD rin,I_chr3R_9476825_9476895 chr3R + chr3R_9476782_9476895 chr3R_9476825_9476895 chr3R_9476896_9476995;chr3R_9476725_9476781 0.66 0.72 0.40 1.27 0.91 0.51 0.68 0.80 0.78 4.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.21 0.88 0.35 0.71 0.85 0.00 0.32 0.00 2.01 0.75 1.34 13.45 0.34 1.46 2.01 0.53 0.26 0.00 1.52 0.68 0.77 0.60 0.47 0.78 0.52 0.57 1.12 0.38 6.52 0.44 1.26 0.69 0.66 0.00 0.55 0.79 2.66 0.37 0.50 1.41 0.00 N alternative_donor bchs,I_chr2L_5907926_5908312 chr2L + chr2L_5907288_5908312;chr2L_5907926_5908312 chr2L_5907644_5908312 chr2L_5908313_5908412;chr2L_5907175_5907287 0.00 0.00 8.11 0.00 0.00 0.00 4.17 3.23 3.53 0.00 0.00 2.99 0.00 0.00 3.77 0.00 0.00 0.00 0.00 5.13 0.00 6.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.33 3.28 0.00 0.00 0.00 0.00 0.00 4.69 0.00 3.08 0.00 0.00 0.00 0.00 0.00 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.32 K intron_retention CG13692,E_chr2L_422193_422242 chr2L + chr2L_422189_422242 chr2L_422188_422189;chr2L_422242_422243 chr2L_422093_422188;chr2L_422243_422342 12.90 6.67 NA NA NA 15.38 9.52 33.33 15.38 NA 30.77 15.15 NA NA NA 11.11 NA NA 23.08 18.75 NA NA 25.00 6.90 NA 25.00 17.65 30.77 10.53 16.67 14.29 10.00 12.50 17.65 NA NA 15.15 6.67 10.34 0.00 NA 16.67 NA 9.09 12.50 14.63 12.90 9.52 13.79 9.68 10.26 0.00 2.33 4.76 14.29 15.15 3.39 6.52 K intron_retention jim,I_chr3L_22791582_22791898 chr3L - chr3L_22793885_22793949 chr3L_22793884_22793885;chr3L_22793949_22793950 chr3L_22793125_22793884;chr3L_22793950_22794765 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 8.62 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 K alternative_acceptor RI_chr2R_12912984_12913058,RhoGEF2 chr2R + chr2R_12922514_12922850;chr2R_12922514_12923162 chr2R_12922514_12923159 chr2R_12922340_12922513;chr2R_12923163_12923912 1.61 1.52 1.61 0.80 1.67 8.06 4.26 0.87 0.64 1.82 3.03 0.73 1.54 2.82 2.67 1.22 1.61 1.61 2.56 1.61 1.89 0.65 1.00 4.00 1.85 1.33 2.83 1.75 0.00 1.04 1.35 3.03 0.62 1.65 1.27 2.02 0.93 1.59 0.93 2.44 0.00 0.67 1.49 1.05 2.33 1.54 5.56 0.00 0.76 1.72 1.12 2.08 2.04 4.76 1.19 5.41 3.85 1.25 K alternative_donor CG12163,CG33293,I_chr3R_1068862_1077145,RI_chr3R_1069977_1077139 chr3R - chr3R_1065342_1077145 chr3R_1065342_1077139 chr3R_1065214_1065341;chr3R_1077146_1077239 5.38 4.75 7.22 5.04 7.08 9.95 9.13 5.10 7.85 6.08 4.37 8.02 7.93 7.80 7.59 5.56 6.85 6.46 5.58 4.71 2.69 6.12 4.72 4.90 6.22 4.83 5.75 4.00 5.16 4.43 6.17 0.94 3.57 7.47 10.36 5.11 5.96 7.06 5.38 4.91 2.05 7.26 8.46 3.42 1.01 1.63 1.09 5.22 7.01 1.14 6.36 6.88 2.28 2.30 7.34 1.44 1.03 1.89 K intron_retention Socs36E chr2L - chr2L_18141251_18141743 chr2L_18141250_18141251;chr2L_18141743_18141744 chr2L_18140443_18141250;chr2L_18141744_18141853 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8963,I_chr2R_12906431_12906583,I_chr2R_12906930_12906989 chr2R - chr2R_12906431_12906711 chr2R_12906430_12906431;chr2R_12906711_12906712 chr2R_12906331_12906430;chr2R_12906712_12906826 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 1.56 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette Sh3beta,I_chr3L_7358062_7358169,RI_chr3L_7358065_7358169,I_chr3L_7361085_7361784 chr3L - chr3L_7358065_7360658 chr3L_7358065_7358169;chr3L_7359311_7359541;chr3L_7359617_7360658 chr3L_7358170_7359310;chr3L_7359542_7359616 chr3L_7357965_7358064;chr3L_7360659_7361084 100.00 66.67 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 75.00 66.67 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 66.67 100.00 100.00 100.00 66.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 75.00 K alternative_last_exon CG14394,I_chr3R_8522392_8522445 chr3R + chr3R_8522022_8522786;chr3R_8522022_8522175 chr3R_8522022_8522445 chr3R_8522787_8523265;chr3R_8522176_8522382 chr3R_8522446_8522755 chr3R_8521845_8522021 80.00 NA NA 80.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG6678 chr3R + chr3R_17713277_17713756 chr3R_17713314_17713756 chr3R_17713757_17714276;chr3R_17712862_17713276 84.52 NA NA NA NA 85.71 54.55 87.50 100.00 NA NA 63.64 NA NA 90.00 NA NA NA 75.00 87.50 NA NA 92.86 NA NA NA 60.00 NA 77.78 80.00 63.64 83.33 92.31 NA 66.67 91.67 81.82 66.67 92.31 63.16 78.95 90.00 NA 85.71 90.00 93.33 NA 75.76 83.33 NA NA 75.00 NA 88.89 87.50 60.00 87.50 94.74 K intron_retention scra,EI_chr2R_3480349_3480405 chr2R + chr2R_3478931_3479011 chr2R_3478930_3478931;chr2R_3479011_3479012 chr2R_3478451_3478930;chr2R_3479012_3479378 75.61 79.10 76.81 82.14 90.57 74.58 76.56 79.80 78.74 69.05 73.33 70.08 82.50 77.78 76.39 77.33 75.56 72.41 85.00 68.09 80.43 83.33 72.63 78.41 79.69 91.25 88.31 69.57 60.49 69.88 83.33 80.33 78.64 80.20 74.03 83.10 73.33 66.28 70.59 63.01 85.29 79.17 74.55 73.85 51.16 75.61 68.12 67.53 79.46 67.19 65.98 68.33 75.68 72.55 79.71 67.50 72.00 70.59 K jcn_only_AD CG7523 chr3R - chr3R_13495349_13495787 chr3R_13495349_13495729 chr3R_13494947_13495348;chr3R_13495788_13496064 0.72 0.40 0.58 0.52 0.00 0.83 1.23 1.07 0.84 3.33 1.80 0.72 0.85 0.00 0.65 0.71 0.70 1.37 0.81 0.00 1.72 1.07 0.32 0.92 0.72 0.68 0.38 0.76 0.00 1.93 8.40 2.61 0.44 0.00 0.71 0.49 1.06 0.38 0.58 0.61 1.10 0.56 0.00 0.78 0.69 0.68 0.65 1.42 0.39 0.80 1.95 1.31 0.36 0.84 0.00 1.57 1.01 1.18 K alternative_acceptor RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,alpha4GT1,RI_chr2L_3022346_3022422,CG3605,CG17258 chr2L - chr2L_3022346_3022422 chr2L_3022369_3022422 chr2L_3022423_3022522;chr2L_3022246_3022345 96.97 92.31 96.88 95.56 100.00 96.15 97.62 100.00 98.41 96.88 100.00 100.00 100.00 100.00 93.94 94.59 95.24 96.30 100.00 98.25 82.61 100.00 91.67 100.00 100.00 100.00 96.77 100.00 100.00 94.74 95.65 100.00 96.55 100.00 95.00 95.65 100.00 100.00 95.74 96.97 95.24 98.44 93.75 97.30 96.00 100.00 96.15 95.65 94.64 96.77 100.00 95.45 90.00 100.00 100.00 90.91 97.37 100.00 K alternative_acceptor CG33116,I_chr2L_19533887_19534154 chr2L + chr2L_19533887_19534154 chr2L_19533887_19534149 chr2L_19533787_19533886;chr2L_19534155_19534218 100.00 100.00 100.00 100.00 100.00 100.00 96.43 97.22 97.78 100.00 100.00 97.83 100.00 100.00 100.00 94.29 94.12 100.00 96.30 98.00 94.74 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 97.22 95.00 90.91 96.77 95.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 97.83 100.00 100.00 100.00 92.31 NA 94.74 100.00 100.00 100.00 K jcn_only_AA CG12576,RI_chrX_21878289_21882347,I_chrX_21882735_21882809,I_chrX_21882735_21883407,I_chrX_21882735_21883467,I_chrX_21882735_21883620,I_chrX_21882735_21883714 chrX - chrX_21882732_21883750 chrX_21882735_21883750 chrX_21883751_21883814;chrX_21882635_21882731 89.80 89.36 93.06 92.36 92.96 84.93 88.57 91.19 87.65 91.23 94.12 87.86 89.89 85.57 87.91 89.63 89.80 90.67 87.39 89.62 84.04 95.49 88.98 87.84 90.38 92.00 87.34 78.33 84.30 90.00 91.49 88.00 91.76 89.09 95.45 93.83 94.79 91.94 91.86 91.87 90.67 88.31 88.46 89.84 93.02 88.98 85.11 91.80 91.76 79.69 93.62 83.78 89.83 89.58 89.72 94.94 88.89 88.56 K intron_retention alpha-Man-II chr3R + chr3R_5242215_5242310 chr3R_5242214_5242215;chr3R_5242310_5242311 chr3R_5241152_5242214;chr3R_5242311_5242989 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG3589 chr2R + chr2R_20672784_20672850 chr2R_20672784_20672834 chr2R_20672324_20672783;chr2R_20672851_20672935 100.00 100.00 NA 100.00 NA NA 100.00 97.56 97.44 NA 100.00 97.67 NA NA 100.00 96.43 100.00 NA NA 100.00 NA 95.35 100.00 93.48 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 96.97 100.00 100.00 NA 100.00 100.00 100.00 100.00 95.45 98.08 NA 96.15 95.65 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 89.66 95.35 96.15 97.14 K cassette msps,I_chr3R_11877071_11877796 chr3R + chr3R_11882514_11883273 chr3R_11882514_11883015;chr3R_11883112_11883273 chr3R_11883016_11883111 chr3R_11882014_11882513;chr3R_11883274_11883487 8.16 6.96 13.64 6.51 12.17 6.61 4.93 6.79 6.34 16.67 5.68 4.66 6.98 7.63 8.20 9.30 7.14 9.32 10.00 17.62 8.51 15.54 8.16 7.59 3.03 3.08 8.59 9.52 6.32 10.71 11.29 20.69 15.08 7.00 7.76 23.91 11.49 7.96 5.05 4.60 12.07 5.02 8.65 10.58 10.14 13.51 10.28 18.70 5.48 6.48 7.23 7.55 7.25 8.33 5.99 9.90 8.05 15.38 K alternative_last_exon CG12163,I_chr3R_1068862_1077145,RI_chr3R_1069977_1077139 chr3R - chr3R_1065342_1077139 chr3R_1069977_1077139 chr3R_1065214_1065341 chr3R_1068874_1069976 chr3R_1077140_1077239 16.67 NA NA NA NA NA 16.67 0.00 10.00 NA NA 16.67 NA 33.33 NA NA NA 20.00 20.00 11.11 NA 12.50 NA 16.67 NA NA 14.29 NA 0.00 NA NA NA NA NA NA 20.00 NA NA NA NA NA 10.00 25.00 NA NA NA 33.33 NA NA NA 25.00 NA NA NA NA NA NA 0.00 K alternative_acceptor ras chrX + chrX_10639523_10639804 chrX_10639523_10639710 chrX_10639459_10639522;chrX_10639805_10639997 100.00 100.00 100.00 100.00 100.00 100.00 95.65 96.97 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 94.12 93.75 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 96.15 100.00 100.00 97.73 100.00 100.00 100.00 95.24 100.00 95.24 100.00 100.00 100.00 K jcn_only_AD TBPH,I_chr2R_19748981_19749882,I_chr2R_19748981_19749921,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19748981_19749882;chr2R_19748981_19749899;chr2R_19748981_19749783 chr2R_19748981_19750012 chr2R_19748884_19748980;chr2R_19750013_19750013 15.47 10.81 18.75 13.79 20.00 20.00 10.00 22.37 11.11 NA 13.04 17.33 14.81 13.16 21.95 23.64 17.65 21.43 15.38 23.61 12.12 14.29 6.67 16.67 11.54 15.56 5.41 NA 35.00 14.29 36.96 40.00 38.10 17.65 NA 8.70 3.33 11.54 25.53 13.33 16.00 15.71 26.09 5.88 NA 13.89 27.27 11.76 15.25 15.15 16.33 20.00 NA 6.25 14.29 26.47 14.29 17.95 N intron_retention aru,I_chr2L_864795_867505,snoRNA:Me28S-U1230 chr2L - chr2L_864966_865826 chr2L_864965_864966;chr2L_865826_865827 chr2L_864877_864965;chr2L_865827_865847 100.00 100.00 100.00 67.44 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 70.73 100.00 84.93 100.00 100.00 100.00 85.25 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 82.35 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 76.92 100.00 100.00 58.70 100.00 68.18 82.86 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 76.92 K jcn_only_AA CG6509 chr2L - chr2L_11515671_11515725 chr2L_11515674_11515725 chr2L_11515726_11515817;chr2L_11511609_11515670 96.25 89.29 95.12 95.38 100.00 91.30 92.16 96.97 94.44 95.65 96.88 96.25 91.89 100.00 97.78 91.30 94.29 97.62 100.00 92.86 100.00 96.00 96.15 90.91 98.18 97.44 95.35 96.15 97.67 94.67 97.37 NA 95.08 97.26 94.59 95.31 96.94 97.67 94.83 98.80 92.86 97.50 100.00 98.31 96.15 NA 96.43 96.72 91.94 97.30 96.92 96.00 100.00 NA 92.00 100.00 NA 96.30 K intron_retention CG6659 chrX - chrX_18551212_18551268 chrX_18551211_18551212;chrX_18551268_18551269 chrX_18551131_18551211;chrX_18551269_18551277 99.43 100.00 98.11 100.00 100.00 100.00 98.33 98.21 98.32 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 98.08 98.82 100.00 98.59 96.88 100.00 100.00 97.83 100.00 100.00 100.00 100.00 98.65 98.41 100.00 98.61 100.00 100.00 98.90 98.21 98.72 99.43 100.00 99.00 97.56 100.00 98.57 98.81 97.06 100.00 100.00 93.62 100.00 97.44 97.78 100.00 98.25 96.67 97.83 98.88 K jcn_only_AA CG7158 chr3L - chr3L_21668076_21668121;chr3L_21668063_21668121 chr3L_21668049_21668121 chr3L_21668122_21668273;chr3L_21667494_21668048 0.00 2.27 2.33 2.17 0.00 0.00 0.00 2.38 0.00 NA 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 1.89 0.00 2.38 2.78 1.85 0.00 0.00 3.85 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.64 0.00 0.00 0.00 3.57 0.00 0.00 2.38 0.00 0.00 1.61 1.85 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 K intron_retention RI_chr3L_20370940_20371530,I_chr3L_20374844_20374891,fbl chr3L + chr3L_20383494_20383557 chr3L_20383493_20383494;chr3L_20383557_20383558 chr3L_20383374_20383493;chr3L_20383558_20383734 6.56 3.57 3.77 11.11 6.52 10.91 9.26 8.45 6.19 2.27 8.57 4.12 4.65 8.33 7.81 10.53 0.00 6.56 9.52 7.63 2.70 13.04 5.26 4.11 11.90 2.44 10.94 20.00 7.84 8.33 6.35 3.92 7.69 4.94 14.29 13.89 3.90 4.76 6.42 7.14 3.23 9.00 3.45 3.45 7.55 10.29 7.02 5.06 5.15 14.71 4.44 8.00 2.00 8.00 4.00 9.80 5.48 6.45 K alternative_acceptor mfas,I_chr3R_7811954_7812017,I_chr3R_7818597_7818853,I_chr3R_7818607_7818853,RI_chr3R_7818607_7818970 chr3R - chr3R_7818597_7818970;chr3R_7818575_7818970 chr3R_7818607_7818970 chr3R_7818971_7818995;chr3R_7818507_7818574 14.81 12.24 12.00 6.92 11.34 14.93 39.81 12.09 14.35 16.67 16.87 17.37 14.52 12.75 17.27 12.88 13.93 10.87 12.40 15.20 18.18 4.69 15.00 19.30 19.44 8.74 22.50 22.58 19.51 15.69 12.36 14.63 7.50 14.10 13.33 22.86 16.88 22.06 15.91 12.59 16.00 11.82 18.28 16.00 13.11 12.50 14.81 10.91 14.57 20.27 17.78 16.42 13.79 12.50 14.81 19.30 15.48 7.45 K alternative_acceptor CG32412 chr3L - chr3L_5895356_5895434 chr3L_5895377_5895434 chr3L_5895435_5895550;chr3L_5895260_5895355 0.00 0.00 0.00 1.45 0.00 0.00 0.00 3.39 1.32 0.00 0.00 0.00 3.12 0.00 3.03 0.00 2.70 0.00 0.00 1.40 0.00 0.00 1.00 0.00 0.00 3.77 1.12 0.00 1.33 0.00 0.00 0.00 2.27 3.12 0.00 0.00 0.79 4.35 1.06 0.54 0.00 0.93 0.00 0.00 0.00 1.68 0.00 0.81 0.00 0.00 1.33 0.00 0.00 1.39 1.79 0.00 0.00 0.00 K intron_retention CG32243 chr3L - chr3L_4540032_4540084 chr3L_4540031_4540032;chr3L_4540084_4540085 chr3L_4539340_4540031;chr3L_4540085_4540230 0.00 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 1.96 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 NA 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA qkr54B chr2R + chr2R_13357223_13358081 chr2R_13357223_13358071 chr2R_13357143_13357222;chr2R_13358082_13358391 14.71 25.00 25.93 10.91 9.09 23.33 14.71 6.82 21.21 NA 13.04 11.48 4.55 7.69 16.67 18.87 11.11 NA 4.65 23.64 23.08 7.41 14.29 4.55 NA 18.92 14.71 20.00 NA NA 11.27 NA NA 16.28 19.23 NA 3.85 NA 6.45 13.89 NA 11.67 26.92 11.54 NA NA 21.74 NA 25.00 10.00 21.21 NA NA 21.74 19.23 19.05 25.81 NA K intron_retention CG6701,RI_chr2R_9866896_9867532 chr2R - chr2R_9864810_9864880 chr2R_9864809_9864810;chr2R_9864880_9864881 chr2R_9862939_9864809;chr2R_9864881_9865085 0.00 2.33 0.79 1.42 1.09 0.00 2.28 2.23 1.91 0.00 0.00 2.17 1.75 0.00 2.10 2.03 0.00 1.03 1.45 0.56 0.00 1.75 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 1.32 0.00 1.27 2.06 0.00 0.00 0.00 0.00 1.76 1.03 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 K jcn_only_AD Dip-B chr3R + chr3R_9609979_9610038 chr3R_9609982_9610038 chr3R_9610039_9611387;chr3R_9609919_9609978 100.00 100.00 99.54 100.00 99.42 100.00 99.26 100.00 99.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.86 99.47 100.00 99.33 100.00 100.00 100.00 100.00 100.00 99.59 99.64 100.00 99.16 99.22 100.00 100.00 100.00 100.00 99.46 100.00 100.00 100.00 100.00 99.46 99.17 100.00 100.00 98.81 99.66 100.00 100.00 99.44 100.00 100.00 100.00 100.00 100.00 100.00 99.54 100.00 100.00 K intron_retention Ac3,I_chr2L_21635211_21637957,I_chr2L_21643253_21646594 chr2L + chr2L_21638117_21638229 chr2L_21638116_21638117;chr2L_21638229_21638230 chr2L_21637984_21638116;chr2L_21638230_21638303 0.96 NA NA 11.76 NA NA 23.53 6.90 0.00 NA NA 0.00 NA NA 0.00 NA NA NA 0.00 4.55 NA NA NA 0.00 NA 11.11 0.00 NA NA NA 1.92 NA NA NA NA 14.29 NA NA 13.33 0.00 NA 0.00 NA NA NA NA NA NA 8.33 NA 0.00 NA NA NA NA NA NA NA K intron_retention CG12703 chrX + chrX_19651531_19651600 chrX_19651530_19651531;chrX_19651600_19651601 chrX_19651067_19651530;chrX_19651601_19652030 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 1.20 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 K intron_retention CG13124,RI_chr2L_9906444_9907607,RI_chr2L_9907784_9908405,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907548_9907607 chr2L_9907547_9907548;chr2L_9907607_9907608 chr2L_9907051_9907547;chr2L_9907608_9907707 0.00 0.00 0.00 0.88 0.00 0.00 3.03 0.00 2.54 0.00 0.00 5.10 3.70 0.00 1.61 0.00 0.00 0.00 0.00 3.40 2.17 6.19 1.37 0.00 4.88 0.00 3.08 0.00 31.65 0.00 0.00 2.27 0.00 0.93 0.00 1.64 3.77 0.00 0.00 1.72 4.44 2.08 0.00 0.00 0.00 1.41 0.00 4.55 3.12 10.81 3.85 3.03 0.00 0.00 4.23 0.00 0.00 0.00 K jcn_only_AD B52,F_chr3R_9488762_9491174,E_chr3R_9488770_9491174 chr3R + chr3R_9488774_9491174 chr3R_9490657_9491174 chr3R_9491175_9491248 11.48 10.71 10.50 3.26 8.20 7.40 12.94 10.84 12.50 16.16 14.95 15.99 14.94 12.80 7.48 13.56 11.48 12.28 9.63 7.81 11.16 9.06 14.79 15.11 15.07 14.46 11.83 8.14 13.80 8.87 34.51 8.89 7.77 13.25 11.75 11.33 14.83 11.72 14.30 9.61 9.01 11.54 9.35 24.32 6.25 10.11 11.20 7.91 10.88 13.37 14.29 14.46 9.94 10.70 11.61 17.31 8.05 6.43 K alternative_acceptor Dystrophin,noncoding_17759,I_chr3R_15289404_15290179 chr3R + chr3R_15289437_15290221 chr3R_15289437_15290179 chr3R_15289413_15289436;chr3R_15290222_15290279 71.37 NA NA NA NA NA NA NA 72.73 NA NA NA NA 75.00 NA 70.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA smt3,I_chr2L_6967327_6967507 chr2L - chr2L_6967330_6967507 chr2L_6967386_6967507 chr2L_6967508_6967593;chr2L_6966982_6967329 100.00 100.00 100.00 99.92 99.88 100.00 99.91 99.93 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.76 100.00 99.79 99.88 100.00 100.00 100.00 100.00 99.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.82 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.73 100.00 99.82 100.00 100.00 99.91 100.00 K intron_retention I_chr2L_2856176_2856244,RI_chr2L_2856673_2856772,CG2991 chr2L + chr2L_2867231_2867336 chr2L_2867230_2867231;chr2L_2867336_2867337 chr2L_2866814_2867230;chr2L_2867337_2868288 0.00 0.81 0.00 1.25 0.00 0.00 0.00 2.00 1.23 0.00 1.64 2.97 1.06 0.00 0.00 1.40 0.00 1.68 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 1.38 0.00 1.16 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.71 0.00 2.00 1.27 0.00 0.00 0.00 1.35 0.00 0.00 0.53 0.80 0.81 0.00 0.00 0.00 3.08 0.00 1.08 0.00 K jcn_only_AA CG7267,RI_chrX_8967339_8972369,I_chrX_8971691_8972369 chrX - chrX_8966023_8972369 chrX_8971691_8972369 chrX_8972370_8972469;chrX_8965905_8966022 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.04 0.00 0.11 0.00 0.18 0.00 0.00 0.00 0.15 0.15 0.00 0.00 0.00 0.17 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.22 0.00 0.00 0.04 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.41 K alternative_donor CG32000,RI_chr4_153025_153811,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157794_157864 chr4 + chr4_153025_153811;chr4_152914_153811 chr4_152998_153811 chr4_153812_153855;chr4_152891_152913 8.33 NA 0.00 19.44 NA 16.67 4.65 2.50 6.82 NA NA 13.16 14.29 9.09 NA 14.29 NA NA 9.09 8.11 NA NA NA NA NA NA NA NA 18.18 9.09 NA 8.33 3.70 7.14 NA NA NA NA NA 13.33 NA 4.35 7.14 NA 8.33 NA NA 7.14 1.79 NA NA NA NA NA NA NA NA 9.09 K alternative_acceptor eIF-5A,I_chr2R_19946299_19946454,I_chr2R_19946657_19946733,RI_chr2R_19946806_19946861,I_chr2R_19948517_19948682 chr2R + chr2R_19946657_19946733 chr2R_19946657_19946718 chr2R_19946588_19946656;chr2R_19946734_19946799 100.00 100.00 100.00 99.95 100.00 99.90 99.95 99.96 99.96 100.00 100.00 99.95 100.00 100.00 99.92 100.00 100.00 100.00 99.93 99.96 100.00 100.00 99.92 100.00 99.86 99.92 100.00 99.27 100.00 99.84 100.00 100.00 100.00 99.95 100.00 100.00 100.00 100.00 100.00 99.95 99.87 100.00 100.00 99.91 100.00 100.00 100.00 99.87 99.95 100.00 99.92 100.00 100.00 100.00 99.94 100.00 99.94 100.00 K jcn_only_AA CG17574,I_chr2R_8737398_8737465 chr2R - chr2R_8737544_8737603 chr2R_8737547_8737603 chr2R_8737604_8737733;chr2R_8737466_8737543 9.76 10.89 7.85 14.85 9.52 8.15 11.74 7.73 8.14 8.30 11.36 10.03 10.99 8.28 11.27 8.20 9.91 11.11 7.21 9.64 10.26 9.86 6.46 9.24 13.11 8.22 10.51 10.29 15.61 12.97 11.49 9.58 7.18 7.98 10.33 14.35 9.09 12.40 9.76 11.50 14.75 8.45 5.26 8.87 13.66 8.03 5.80 11.18 9.68 7.31 9.81 9.56 7.96 11.08 8.10 10.49 9.46 10.97 K alternative_acceptor I_chr2R_4783150_4783708,Ggamma1,noncoding_5300 chr2R + chr2R_4789783_4789847 chr2R_4789783_4789832 chr2R_4789746_4789782;chr2R_4789848_4790635 96.08 96.05 94.59 98.85 97.22 94.67 93.42 89.32 96.04 100.00 92.00 92.64 98.18 98.36 95.52 97.78 96.67 97.83 93.33 97.49 90.00 93.48 100.00 98.25 95.56 98.33 97.56 96.67 97.62 97.37 95.95 95.35 97.67 93.18 98.21 100.00 92.73 96.00 97.53 92.41 97.30 95.00 97.56 88.89 96.43 96.08 94.38 96.88 93.55 94.44 93.67 97.22 98.72 98.10 93.65 94.52 96.47 94.87 K intron_retention CG4165,I_chrX_5317784_5317881,I_chrX_5321743_5321838 chrX + chrX_5316160_5316612 chrX_5316159_5316160;chrX_5316612_5316613 chrX_5316068_5316159;chrX_5316613_5317050 18.75 14.29 NA 22.22 NA NA 41.67 NA 20.00 NA NA 10.53 NA NA NA 38.46 NA 13.33 6.67 20.00 NA 13.33 18.75 NA NA NA NA 16.67 NA 25.00 NA NA 42.86 15.38 NA 33.33 13.33 NA NA NA NA 10.53 NA NA NA NA NA 50.00 8.33 NA 22.22 NA NA NA NA NA NA NA K cassette cher,I_chr3R_12943024_12948119 chr3R - chr3R_12931536_12932675 chr3R_12931536_12932001;chr3R_12932569_12932675 chr3R_12932002_12932568 chr3R_12930731_12931535;chr3R_12932676_12933062 0.20 0.17 0.18 0.09 0.00 0.24 0.00 0.09 0.06 0.27 0.00 0.15 0.00 0.20 0.17 0.28 0.00 0.16 0.00 0.10 0.18 0.22 0.30 0.45 0.00 0.00 0.19 1.17 0.22 0.20 0.20 0.43 0.30 0.11 0.25 0.62 0.29 0.20 0.26 0.00 0.38 0.16 0.20 0.19 0.34 0.32 0.32 0.34 0.21 0.00 0.20 0.00 0.54 0.64 0.15 0.35 0.39 0.66 K intron_retention lt,I_chr2L_22817840_22817968,RI_chr2L_22820498_22823377,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22818063_22818112 chr2L_22818062_22818063;chr2L_22818112_22818113 chr2L_22817969_22818062;chr2L_22818113_22818230 0.00 0.00 0.00 0.00 0.00 0.00 1.32 1.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 4.29 0.00 0.00 1.64 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 2.25 0.00 1.81 1.11 5.88 0.00 0.00 0.00 0.00 1.07 4.55 0.00 4.55 5.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor I_chr2R_5999081_6000140,E_chr2R_6001157_6001630,CG11866 chr2R + chr2R_6005374_6005536 chr2R_6005405_6005536 chr2R_6005537_6006047;chr2R_6005198_6005373 8.79 14.29 6.25 6.78 5.56 11.11 25.93 6.12 8.51 NA 5.88 7.46 3.23 11.54 13.33 10.29 4.17 5.00 9.52 10.17 12.00 8.00 8.89 4.76 5.13 9.38 11.63 12.50 33.33 6.25 11.11 12.90 11.76 10.20 13.64 9.09 16.67 3.23 5.77 10.00 18.52 5.00 13.79 7.69 8.33 6.06 5.71 11.76 7.46 9.68 10.42 15.38 8.00 5.00 5.88 6.06 8.70 6.45 K intron_retention Hel25E,I_chr2L_5540301_5540396 chr2L - chr2L_5540301_5540396 chr2L_5540300_5540301;chr2L_5540396_5540397 chr2L_5540201_5540300;chr2L_5540397_5540422 90.20 95.45 80.95 96.43 92.86 85.71 86.11 85.71 88.64 81.48 92.86 96.97 95.83 100.00 95.65 91.18 94.12 78.26 91.67 90.20 78.95 82.76 90.70 92.00 76.00 90.48 85.71 97.06 81.58 92.31 74.07 86.36 91.94 91.30 87.50 85.19 86.11 77.78 86.21 85.94 84.78 94.59 76.47 96.00 96.97 81.63 90.91 88.89 95.24 83.33 87.50 93.75 90.91 81.82 82.61 92.59 95.24 90.57 K cassette I_chr2L_2856176_2856244,RI_chr2L_2856673_2856772,CG2991 chr2L + chr2L_2857577_2864968 chr2L_2857577_2859624;chr2L_2859715_2864968 chr2L_2859625_2859714 chr2L_2857219_2857576;chr2L_2864969_2865418 5.88 4.21 7.69 2.91 4.55 5.21 4.62 7.21 6.72 3.03 9.41 6.28 2.35 6.82 5.08 6.10 6.19 6.80 5.50 11.00 9.41 6.36 5.93 4.17 2.82 3.33 4.46 8.70 7.69 5.88 6.56 4.00 2.78 6.76 6.76 1.28 5.26 7.69 4.90 6.38 4.65 6.45 6.80 7.59 4.17 4.62 4.84 2.99 6.11 5.77 4.46 6.25 6.25 4.17 7.91 5.56 6.52 3.03 K alternative_acceptor CG3731,E_chr3R_10717341_10717506 chr3R + chr3R_10716149_10716417 chr3R_10716149_10716391 chr3R_10716056_10716148;chr3R_10716418_10716624 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.20 0.21 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention hang,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16330538_16330620 chrX_16330537_16330538;chrX_16330620_16330621 chrX_16329178_16330537;chrX_16330621_16330698 43.87 46.75 44.44 48.89 48.39 47.54 40.23 45.10 45.83 30.65 44.44 43.10 39.44 44.07 53.42 53.23 56.52 41.18 48.53 39.78 45.45 49.11 44.60 41.24 63.24 59.68 52.58 45.92 38.93 28.70 47.69 47.83 36.07 39.09 42.11 76.06 40.50 43.21 39.55 34.55 56.00 43.87 57.41 36.28 42.67 38.18 32.43 31.03 41.04 37.21 50.49 48.44 27.85 41.94 37.29 45.00 30.14 18.42 K alternative_donor CG15134 chr2L + chr2L_16904713_16905298;chr2L_16904662_16905298 chr2L_16904611_16905298 chr2L_16905299_16905389;chr2L_16904460_16904610 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 2.63 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG4880 chrX + chrX_16781381_16781655 chrX_16781444_16781655 chrX_16781656_16782762;chrX_16780837_16781380 100.00 97.62 100.00 97.87 100.00 97.22 97.83 97.67 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.33 97.87 100.00 100.00 95.65 97.22 96.77 100.00 100.00 96.30 100.00 100.00 100.00 97.06 94.12 98.15 100.00 98.15 96.43 100.00 100.00 100.00 100.00 98.08 97.14 100.00 100.00 100.00 97.62 100.00 100.00 97.67 97.14 97.14 100.00 100.00 K intron_retention Las,mRpL15 chr3L - chr3L_20424705_20424917 chr3L_20424704_20424705;chr3L_20424917_20424918 chr3L_20424548_20424704;chr3L_20424918_20425250 0.00 0.00 NA NA NA NA 0.00 0.00 3.12 0.00 NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA 5.88 4.55 0.00 0.00 NA 3.03 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.23 3.23 2.94 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 K intron_retention Fpps chr2R - chr2R_7194465_7194765 chr2R_7194464_7194465;chr2R_7194765_7194766 chr2R_7194370_7194464;chr2R_7194766_7195007 0.00 0.00 0.00 3.75 0.00 1.69 1.49 3.12 0.00 0.00 1.54 9.46 2.94 0.00 0.00 4.55 0.00 10.53 0.00 3.66 1.96 3.12 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 1.92 2.02 0.00 0.00 2.74 4.44 0.00 0.00 15.00 0.00 0.00 2.00 0.00 7.69 0.00 5.71 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 K alternative_acceptor Dap160,I_chr2L_21139943_21140007 chr2L - chr2L_21138359_21138711 chr2L_21138362_21138711 chr2L_21138712_21139602;chr2L_21138113_21138358 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 90.00 96.15 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.30 96.00 100.00 NA 100.00 100.00 96.15 96.88 100.00 95.83 100.00 100.00 100.00 100.00 100.00 95.24 96.43 97.44 93.55 100.00 NA 100.00 100.00 97.14 100.00 97.67 95.65 100.00 100.00 93.33 96.43 95.65 100.00 95.83 100.00 98.04 K alternative_donor CG4877 chr3L + chr3L_16379595_16379725 chr3L_16379671_16379725 chr3L_16379726_16380052;chr3L_16379486_16379594 90.00 88.89 88.89 90.91 NA 100.00 91.67 81.82 88.89 NA NA 73.68 90.00 85.71 100.00 93.75 NA 87.50 90.91 80.00 NA NA 93.33 88.89 NA 88.89 NA 83.33 NA 100.00 90.00 NA NA 92.31 100.00 85.71 NA NA NA 92.86 NA 92.31 83.33 100.00 NA NA NA 100.00 75.00 NA 91.67 87.50 NA NA 100.00 NA NA NA K jcn_only_AD CG10026 chr2L + chr2L_19455858_19456408 chr2L_19456184_19456408 chr2L_19456409_19456568;chr2L_19455678_19455857 60.00 NA NA NA NA NA NA 60.00 60.47 NA NA 66.67 NA NA NA NA NA NA NA 46.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 40.91 NA NA 50.00 NA NA NA NA NA NA 71.43 NA NA NA NA NA NA NA NA NA K intron_retention alph,I_chr3R_25417890_25422962,chr3R_25434193_25434663.0,chr3R_25438076_25442069.0 chr3R + chr3R_25423196_25423497 chr3R_25423195_25423196;chr3R_25423497_25423498 chr3R_25423141_25423195;chr3R_25423498_25423510 3.64 1.89 3.12 4.84 7.14 6.67 7.81 3.12 2.48 2.94 0.00 4.27 2.50 4.17 5.88 7.00 0.00 0.00 5.00 3.33 0.00 4.29 2.82 5.45 0.00 11.43 6.94 12.07 3.85 1.64 5.17 0.00 0.00 4.82 3.64 9.52 3.70 6.06 5.45 7.14 1.15 3.06 5.00 0.00 1.33 4.60 5.26 0.83 5.81 1.23 1.39 3.12 0.00 5.77 5.26 0.00 2.38 2.04 K intron_retention noncoding_1047,CG3887 chr2L + chr2L_5009525_5009675 chr2L_5009524_5009525;chr2L_5009675_5009676 chr2L_5009085_5009524;chr2L_5009676_5009691 100.00 98.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG12929,RI_chr2R_5474101_5474150 chr2R - chr2R_5473737_5473794 chr2R_5473736_5473737;chr2R_5473794_5473795 chr2R_5473674_5473736;chr2R_5473795_5473836 28.57 33.33 NA 68.00 NA 14.29 45.45 47.37 37.50 NA NA 28.57 NA NA 25.00 NA NA 41.67 NA 31.71 25.00 NA 45.45 11.76 50.00 58.82 38.46 NA 45.45 28.57 30.00 25.00 21.43 23.53 13.33 78.95 NA 41.67 NA 8.33 51.85 26.92 NA NA 9.09 10.00 18.75 0.00 30.77 33.33 21.43 NA 16.00 26.32 35.71 15.00 18.64 23.68 K intron_retention Socs36E chr2L - chr2L_18140155_18140442 chr2L_18140154_18140155;chr2L_18140442_18140443 chr2L_18139896_18140154;chr2L_18140443_18141250 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.22 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.93 0.00 0.00 0.00 0.00 2.17 3.05 1.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585739_2586265;chr3L_2585739_2586402;chr3L_2585739_2586036 chr3L_2585739_2586413 chr3L_2585639_2585738;chr3L_2586414_2586502 0.00 0.00 0.00 0.71 0.87 0.00 0.00 0.29 0.56 0.00 0.62 0.00 0.00 0.43 0.44 0.28 0.00 0.58 0.48 0.00 0.00 0.65 0.97 0.79 0.00 0.47 0.00 0.00 1.02 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 1.31 0.73 0.27 0.64 0.00 0.00 0.00 1.52 0.28 0.98 3.57 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 N mutually_exclusive cv-2 chr2R - chr2R_17246690_17254167,chr2R_17254471_17266009 chr2R_17246690_17251203,chr2R_17251293_17266009 chr2R_17254168_17254470 chr2R_17251204_17251292 chr2R_17246596_17246689;chr2R_17266010_17266907 81.66 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 85.71 NA NA NA NA NA 80.00 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG10277,I_chr3R_2208983_2210253,I_chr3R_2211939_2212057 chr3R + chr3R_2208983_2210702 chr3R_2208983_2210253 chr3R_2208883_2208982;chr3R_2210703_2210980 1.23 3.70 1.35 1.38 2.56 0.00 1.61 1.21 0.57 0.00 0.00 1.44 1.54 1.49 1.37 1.65 0.00 4.00 1.32 0.96 1.59 1.32 1.20 0.96 1.67 2.50 0.80 1.56 1.63 1.74 1.06 1.08 1.30 1.04 0.00 0.87 0.66 NA 0.67 1.20 0.88 0.62 1.72 0.00 1.11 0.76 0.76 1.24 1.64 0.00 1.44 2.38 0.00 1.06 1.33 2.27 1.47 1.00 K jcn_only_AA Rox8,I_chr3R_19872211_19872659,I_chr3R_19872214_19872630,I_chr3R_19872214_19872636,I_chr3R_19872214_19872838,I_chr3R_19876189_19876240 chr3R - chr3R_19872211_19873540 chr3R_19872214_19873540 chr3R_19873541_19873670;chr3R_19872114_19872210 90.35 NA 93.33 84.31 NA 88.46 92.86 82.76 90.00 NA NA 93.94 80.95 93.33 92.68 79.41 90.91 NA 92.86 86.67 86.36 NA 96.43 NA NA 81.25 100.00 NA 83.33 NA 100.00 NA 90.00 90.70 90.00 100.00 NA NA 95.45 NA NA 89.09 82.61 NA NA NA NA 83.87 92.59 NA NA NA NA NA NA NA NA 93.33 K intron_retention CG3501,I_chr2R_18772777_18772819 chr2R - chr2R_18769183_18769245 chr2R_18769182_18769183;chr2R_18769245_18769246 chr2R_18768711_18769182;chr2R_18769246_18769443 100.00 100.00 100.00 100.00 100.00 100.00 99.04 100.00 100.00 100.00 100.00 99.35 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.30 100.00 99.11 100.00 100.00 98.97 100.00 100.00 100.00 100.00 K intron_retention noncoding_7373,REI_chr2R_12706037_12706094 chr2R - chr2R_12706006_12706094 chr2R_12706005_12706006;chr2R_12706094_12706095 chr2R_12705937_12706005;chr2R_12706095_12706194 30.77 NA NA NA NA NA 33.33 33.33 35.29 NA NA 26.09 30.77 NA 46.15 NA NA 13.64 45.45 47.06 NA NA NA NA NA NA NA NA NA NA 13.04 NA NA 45.45 NA NA NA NA NA 15.79 NA 26.32 NA 14.29 NA NA NA NA 47.06 NA 30.77 NA NA NA NA NA NA 0.00 K cassette I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,cg,I_chr2R_10064197_10065344,I_chr2R_10064197_10068715,I_chr2R_10068194_10068715 chr2R + chr2R_10064197_10065365;chr2R_10064197_10065389 chr2R_10064197_10064679;chr2R_10064983_10065389,chr2R_10064983_10065365 chr2R_10064680_10064982 chr2R_10064117_10064196;chr2R_10065390_10065444 78.79 85.12 75.82 60.83 72.73 75.00 48.08 68.85 75.62 87.21 57.69 92.00 81.33 72.00 77.66 72.83 74.65 66.67 72.37 78.79 64.94 58.70 79.71 89.57 89.29 59.55 80.85 85.19 80.18 82.14 73.61 85.71 81.03 72.86 75.00 81.48 92.18 88.36 88.55 79.44 81.01 78.57 74.60 83.74 80.18 81.31 83.64 77.59 78.86 82.88 77.50 76.53 87.38 85.86 74.51 87.37 78.57 78.10 K alternative_donor Spred,I_chr2R_10655876_10656041,I_chr2R_10655876_10656193,I_chr2R_10655876_10656868 chr2R - chr2R_10655876_10656848;chr2R_10655876_10656782;chr2R_10655876_10656526;chr2R_10655876_10656871 chr2R_10655876_10656878 chr2R_10655776_10655875;chr2R_10656879_10656886 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 4.55 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 11.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG42358,CG42359 chr3R - chr3R_14986947_14987511 chr3R_14986946_14986947;chr3R_14987511_14987512 chr3R_14986449_14986946;chr3R_14987512_14987761 34.62 28.21 26.00 40.00 41.18 27.27 48.28 28.74 30.00 54.55 43.33 34.62 27.08 32.56 28.57 26.25 26.67 44.90 26.53 41.30 33.33 14.29 21.15 29.17 34.38 38.30 34.78 21.05 46.67 32.00 46.75 60.00 14.63 29.33 28.95 42.11 44.44 37.50 46.81 36.99 37.50 25.25 24.24 38.64 46.94 39.13 34.00 44.44 31.76 21.82 35.09 41.94 38.30 37.50 32.14 32.76 38.20 38.46 K cassette CG34398 chr2L + chr2L_8916054_8925203 chr2L_8916054_8922937;chr2L_8923457_8925203 chr2L_8922938_8923456 chr2L_8916029_8916053;chr2L_8925204_8925456 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG4169,CG32163 chr3L + chr3L_16577823_16577878 chr3L_16577822_16577823;chr3L_16577878_16577879 chr3L_16577689_16577822;chr3L_16577879_16578182 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.66 0.00 0.25 0.00 0.00 0.72 1.69 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.18 0.45 1.65 0.38 0.00 0.00 0.26 0.74 0.61 1.09 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.00 K jcn_only_AA CtBP chr3R + chr3R_8847365_8850545 chr3R_8847365_8850521 chr3R_8847142_8847364;chr3R_8850546_8850586 65.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 65.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG17660 chr2L - chr2L_1709806_1709877 chr2L_1709812_1709877 chr2L_1709878_1709963;chr2L_1709617_1709805 99.46 100.00 100.00 99.46 99.01 100.00 100.00 99.49 100.00 99.46 99.21 99.22 99.14 100.00 99.34 100.00 100.00 100.00 99.17 99.29 99.14 100.00 98.40 99.01 98.70 99.12 100.00 98.31 100.00 99.33 97.01 100.00 99.64 99.45 100.00 100.00 99.70 100.00 100.00 99.63 100.00 99.62 98.04 100.00 100.00 100.00 99.28 98.36 98.59 98.51 100.00 98.11 99.31 99.01 99.17 99.24 99.35 99.29 K intron_retention Tsp97E chr3R - chr3R_22790008_22790364 chr3R_22790007_22790008;chr3R_22790364_22790365 chr3R_22789840_22790007;chr3R_22790365_22790433 3.33 0.00 3.33 0.00 NA 8.33 5.88 4.35 2.33 NA NA 3.08 0.00 0.00 0.00 0.00 NA 8.33 0.00 1.47 9.52 16.22 5.66 1.96 5.71 0.00 5.26 8.00 4.00 NA 6.06 8.70 15.38 0.00 0.00 0.00 6.25 0.00 2.08 12.50 NA 5.77 0.00 8.33 0.00 5.00 7.69 25.00 3.39 4.17 2.38 0.00 0.00 6.25 3.12 0.00 0.00 14.29 K cassette crol,I_chr2L_11799403_11802904 chr2L - chr2L_11799403_11802286;chr2L_11799403_11802904;chr2L_11799403_11802370 chr2L_11799403_11800154;chr2L_11800323_11802286,chr2L_11800323_11802904,chr2L_11800323_11802370 chr2L_11800155_11800322 chr2L_11799303_11799402;chr2L_11802905_11803004 99.62 98.88 99.44 98.74 99.38 100.00 99.54 99.13 99.44 100.00 100.00 99.31 99.29 100.00 99.44 100.00 100.00 100.00 99.35 99.68 100.00 99.04 98.83 99.58 99.52 100.00 99.62 99.60 97.71 100.00 100.00 100.00 99.38 99.59 99.32 99.45 99.73 100.00 99.71 99.29 98.36 99.67 100.00 99.50 100.00 100.00 100.00 100.00 99.64 98.25 99.61 99.40 100.00 100.00 99.46 100.00 100.00 100.00 K alternative_acceptor cals,I_chr4_1139644_1142084,RI_chr4_1141233_1142084 chr4 - chr4_1136521_1136581 chr4_1136524_1136581 chr4_1136582_1136705;chr4_1135886_1136520 19.10 16.00 13.04 18.64 NA 21.05 27.27 17.91 25.71 20.00 25.00 19.15 21.05 22.22 NA 20.27 19.05 31.58 25.71 19.57 18.18 NA 15.79 17.86 NA NA 23.53 NA NA 20.00 16.67 12.50 6.67 22.73 24.00 NA 26.67 14.29 NA 17.24 14.29 28.85 19.05 25.00 NA 25.81 15.38 13.04 24.29 17.24 14.29 6.67 NA 28.57 12.90 23.81 18.75 12.00 K alternative_donor CG1746,I_chr3R_27044771_27044867,I_chr3R_27044771_27044990,I_chr3R_27044771_27045027,RI_chr3R_27044771_27045110,I_chr3R_27044771_27045132,RI_chr3R_27044771_27045188,I_chr3R_27044771_27045193,RI_chr3R_27044771_27045268 chr3R - chr3R_27044771_27044867;chr3R_27044771_27045188;chr3R_27044771_27045257;chr3R_27044771_27045132;chr3R_27044771_27045110;chr3R_27044771_27044831;chr3R_27044771_27044990;chr3R_27044771_27044895 chr3R_27044771_27045027 chr3R_27044671_27044770;chr3R_27045258_27045273 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette Ten-m,EI_chr3L_22298865_22299141,I_chr3L_22300015_22300646,I_chr3L_22374182_22399991 chr3L - chr3L_22297630_22300646 chr3L_22297630_22298066;chr3L_22298865_22299141;chr3L_22300015_22300646 chr3L_22298067_22298864;chr3L_22299142_22300014 chr3L_22297346_22297629;chr3L_22300647_22300652 54.55 46.15 54.55 46.67 55.56 42.86 60.00 59.09 56.76 25.00 55.56 68.18 85.71 50.00 44.44 68.75 63.64 50.00 66.67 61.11 54.55 25.93 61.11 50.00 75.00 46.15 47.06 NA 50.00 30.43 63.64 NA 33.33 59.09 60.00 56.25 50.00 36.36 46.67 50.00 33.33 62.50 71.43 47.06 NA 66.67 50.00 46.15 60.71 100.00 60.00 66.67 50.00 NA 45.45 50.00 66.67 66.67 K jcn_only_AA I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,cg,I_chr2R_10064197_10068715,I_chr2R_10068194_10068715 chr2R + chr2R_10066547_10066616 chr2R_10066547_10066613 chr2R_10066399_10066546;chr2R_10066617_10066759 59.50 63.76 54.79 58.76 56.55 58.79 55.41 60.50 58.39 54.39 60.82 58.65 67.03 57.69 56.64 63.30 59.18 55.56 57.80 60.15 54.49 61.48 57.68 61.04 61.88 56.10 67.69 64.00 59.50 61.62 55.62 58.30 61.73 57.22 63.87 60.96 60.62 61.51 58.68 60.04 56.77 60.14 60.62 61.25 63.02 61.77 55.83 58.60 60.31 63.95 60.40 59.86 58.06 57.75 53.27 54.76 63.94 58.97 K alternative_donor MED26,RE_chr4_803564_803799,RI_chr4_803872_803924,I_chr4_807836_808089 chr4 - chr4_803872_803927 chr4_803872_803924 chr4_803800_803871;chr4_803928_804024 0.00 NA 7.69 0.00 NA NA 2.38 6.98 3.77 NA NA 0.00 6.25 0.00 0.00 4.26 7.69 NA 0.00 2.94 NA NA 5.88 NA NA 0.00 6.67 NA NA NA 3.85 NA NA 2.70 NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K alternative_donor Mmp1,E_chr2R_20560380_20562585,I_chr2R_20564123_20565214,I_chr2R_20569965_20572193 chr2R - chr2R_20560840_20562585 chr2R_20560840_20562495 chr2R_20560775_20560839;chr2R_20562586_20562664 100.00 100.00 98.85 100.00 100.00 100.00 100.00 100.00 100.00 98.13 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.34 100.00 100.00 99.27 100.00 100.00 100.00 99.32 98.81 99.18 100.00 100.00 98.44 99.12 100.00 100.00 99.07 100.00 100.00 99.50 99.34 99.04 100.00 100.00 98.03 100.00 99.35 100.00 98.97 99.33 100.00 100.00 100.00 100.00 100.00 100.00 98.95 100.00 100.00 K cassette Hcf,I_chr4_391984_392875 chr4 + chr4_391984_392875 chr4_391984_392438;chr4_392803_392875 chr4_392439_392802 chr4_391886_391983;chr4_392876_392975 100.00 100.00 100.00 99.25 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.00 98.95 100.00 100.00 98.44 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 98.41 100.00 100.00 98.63 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Aldolase,I_chr3R_22083764_22086684 chr3R - chr3R_22082030_22082654 chr3R_22082029_22082030;chr3R_22082654_22082655 chr3R_22081992_22082029;chr3R_22082655_22082854 11.54 8.64 14.16 32.65 17.39 10.45 14.58 19.61 17.19 24.55 6.86 12.65 17.98 23.44 16.22 14.84 9.64 15.25 5.79 13.04 11.11 23.31 15.46 12.02 10.28 10.00 11.54 27.96 19.63 9.25 14.63 10.14 9.24 13.49 13.01 10.66 8.58 8.92 9.44 13.41 8.99 13.26 16.42 7.80 3.73 10.28 9.35 16.15 12.68 10.14 9.70 9.38 8.24 7.04 12.28 8.17 8.38 9.57 K intron_retention CG4768 chrX + chrX_16688670_16688728 chrX_16688669_16688670;chrX_16688728_16688729 chrX_16688483_16688669;chrX_16688729_16688956 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 2.60 0.00 0.00 0.00 0.00 1.61 3.12 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K alternative_acceptor Pgi,I_chr2R_4801076_4801329 chr2R - chr2R_4801076_4801214;chr2R_4801134_4801214 chr2R_4801072_4801214 chr2R_4801215_4801631;chr2R_4800976_4801071 0.00 0.00 2.17 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 NA 0.00 NA NA K intron_retention CG30118,I_chr2R_14320281_14325712,I_chr2R_14325118_14325712 chr2R - chr2R_14325483_14325712 chr2R_14325482_14325483;chr2R_14325712_14325713 chr2R_14325445_14325482;chr2R_14325713_14325780 0.00 0.00 NA 3.23 NA NA 6.25 4.35 4.55 NA NA 0.00 NA 0.00 NA 4.35 NA 0.00 5.56 0.00 NA NA NA 0.00 NA NA 0.00 13.33 NA NA 0.00 0.00 0.00 4.76 NA NA 0.00 NA NA 5.56 NA 0.00 NA 6.67 NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 K intron_retention I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,cg,I_chr2R_10064197_10065344,I_chr2R_10064197_10068715,I_chr2R_10067437_10068984,I_chr2R_10068194_10068715 chr2R + chr2R_10064197_10065389 chr2R_10064196_10064197;chr2R_10065389_10065390 chr2R_10064117_10064196;chr2R_10065390_10065444 96.55 100.00 96.88 94.44 90.48 100.00 66.67 97.62 94.92 100.00 92.00 100.00 100.00 95.45 97.22 98.08 100.00 96.77 96.97 100.00 100.00 96.55 95.24 96.88 96.30 100.00 100.00 93.75 87.88 94.44 100.00 95.00 91.49 97.92 95.45 100.00 97.56 96.43 93.18 96.23 100.00 92.59 95.00 100.00 85.19 97.14 91.30 97.83 93.55 95.00 89.74 90.00 96.15 100.00 97.22 88.89 94.44 97.06 K jcn_only_AA RpL17,I_chrX_6637182_6638207 chrX - chrX_6637182_6638228 chrX_6638155_6638228 chrX_6638229_6638235 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 2.33 0.00 0.00 NA 0.00 0.00 2.63 0.00 0.00 0.00 K intron_retention CG30015,I_chr2R_6743814_6744285 chr2R - chr2R_6736046_6736098 chr2R_6736045_6736046;chr2R_6736098_6736099 chr2R_6735958_6736045;chr2R_6736099_6736765 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 1.98 4.35 0.00 4.40 1.49 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 2.50 2.56 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 3.57 0.00 K alternative_donor Sep4,I_chrX_16588453_16588650,I_chrX_16588453_16588983 chrX - chrX_16588405_16588650;chrX_16588405_16589150 chrX_16588405_16588983 chrX_16588353_16588404;chrX_16589151_16589177 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor brm,I_chr3L_15968197_15968325 chr3L - chr3L_15975300_15975367 chr3L_15975312_15975367 chr3L_15975368_15975432;chr3L_15975223_15975299 51.52 45.65 37.50 62.50 50.00 60.00 47.06 45.83 45.45 42.86 57.14 54.35 56.25 45.83 48.00 75.00 63.64 51.72 64.71 54.90 57.14 46.81 45.78 45.00 45.45 62.07 52.94 81.25 56.25 45.90 61.11 50.00 40.28 58.06 52.78 50.82 45.37 51.11 50.00 60.44 60.87 47.83 53.33 60.00 51.52 45.95 40.54 63.38 60.00 45.95 55.10 51.72 43.75 39.29 57.14 42.42 30.77 55.26 K alternative_donor ctp,I_chrX_4582382_4585669,I_chrX_4582627_4585669,RI_chrX_4582706_4585629,RI_chrX_4582706_4592329 chrX + chrX_4582325_4585669;chrX_4582351_4585669 chrX_4582706_4585669 chrX_4585670_4585729;chrX_4582282_4582324 1.54 1.66 2.22 1.89 1.18 1.97 2.50 2.17 1.47 1.14 1.35 1.42 2.21 1.54 1.03 1.88 1.52 1.76 2.52 0.76 0.66 0.00 1.41 1.75 2.83 1.92 1.31 3.70 1.60 1.43 1.65 0.88 1.15 1.42 3.17 0.92 1.57 0.00 1.79 2.07 2.22 1.35 2.41 1.40 3.15 2.04 0.62 2.54 1.85 0.97 1.51 1.36 0.98 0.98 1.47 1.66 0.97 2.45 K intron_retention E_chr3R_6935653_7037028,nocturnin,RI_chr3R_7026291_7032627,I_chr3R_7029508_7030286 chr3R + chr3R_7033204_7033270 chr3R_7033203_7033204;chr3R_7033270_7033271 chr3R_7033082_7033203;chr3R_7033271_7033903 0.00 0.00 0.00 3.45 0.00 0.00 5.26 0.00 3.39 0.00 NA 6.25 0.00 3.85 0.00 2.44 0.00 4.00 0.00 1.75 0.00 9.09 2.86 8.33 NA 10.53 3.23 0.00 22.73 0.00 0.00 NA 0.00 3.33 NA 0.00 0.00 0.00 0.00 0.00 5.56 3.77 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 5.56 K intron_retention CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20824494_20825667 chr2L_20824493_20824494;chr2L_20825667_20825668 chr2L_20824482_20824493;chr2L_20825668_20825758 78.41 82.76 57.84 65.22 39.29 63.16 58.97 45.24 55.71 89.58 78.85 72.43 46.51 61.11 56.64 59.14 30.91 62.35 52.63 61.69 65.67 97.37 95.88 95.00 95.24 70.30 96.34 94.03 91.67 84.78 63.16 76.92 60.00 51.72 88.16 91.86 87.72 97.87 94.17 88.24 80.30 56.50 44.12 85.71 65.83 89.36 90.79 78.41 60.96 95.65 95.51 92.00 89.71 95.28 55.56 87.84 81.33 54.46 K intron_retention Pect,I_chr2L_13207997_13208109,E_chr2L_13208285_13210076 chr2L + chr2L_13209846_13209910 chr2L_13209845_13209846;chr2L_13209910_13209911 chr2L_13209660_13209845;chr2L_13209911_13210848 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.49 0.00 0.00 0.74 0.00 0.00 0.00 0.34 0.18 0.00 0.00 0.00 0.00 0.00 0.00 1.87 2.05 0.00 0.40 0.00 0.00 0.00 0.57 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD sec8,I_chr3R_1583812_1583897 chr3R - chr3R_1583812_1583897 chr3R_1583812_1583870 chr3R_1583712_1583811;chr3R_1583898_1583997 100.00 100.00 100.00 98.89 100.00 98.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.36 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.69 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.36 100.00 100.00 100.00 98.50 100.00 98.82 99.20 100.00 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 98.70 100.00 100.00 98.59 97.37 100.00 100.00 K intron_retention CG10082,E_chr2R_17533874_17544072,RI_chr2R_17537544_17537615,I_chr2R_17541516_17542279,I_chr2R_17541573_17542279,I_chr2R_17543813_17543881 chr2R + chr2R_17540069_17540417 chr2R_17540068_17540069;chr2R_17540417_17540418 chr2R_17539942_17540068;chr2R_17540418_17540517 100.00 NA 100.00 87.50 NA 90.00 100.00 100.00 95.45 NA NA 95.83 NA 100.00 NA 94.74 NA NA 100.00 95.24 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 91.67 NA NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA N jcn_only_AD noncoding_14363 chr3LHet - chr3LHet_709742_709797 chr3LHet_709742_709795 chr3LHet_709691_709741;chr3LHet_709798_709832 69.57 NA NA NA NA NA 50.00 NA 65.22 NA NA 57.50 NA NA NA NA NA NA NA 100.00 NA 60.00 NA 100.00 NA NA NA NA NA NA 64.71 NA NA 35.00 NA NA NA 100.00 100.00 62.71 NA 100.00 NA 69.70 NA NA NA 69.44 100.00 NA 61.90 100.00 NA NA NA NA NA 100.00 K intron_retention CG11092 chrX + chrX_13717121_13717183 chrX_13717120_13717121;chrX_13717183_13717184 chrX_13716881_13717120;chrX_13717184_13717364 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 1.86 0.00 0.00 K alternative_donor CG11984,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4839215_4839655;chr3R_4839215_4839561;chr3R_4839215_4839851;chr3R_4839215_4839889;chr3R_4839215_4839799 chr3R_4839215_4839728 chr3R_4839038_4839214;chr3R_4839890_4839901 0.00 0.00 0.00 9.09 20.00 0.00 12.50 0.00 9.52 0.00 50.00 27.27 0.00 0.00 11.11 8.33 16.67 0.00 14.29 6.67 0.00 0.00 25.00 0.00 0.00 14.29 0.00 0.00 0.00 0.00 10.00 0.00 0.00 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.65 9.09 0.00 0.00 22.22 0.00 0.00 0.00 22.22 0.00 0.00 0.00 0.00 11.11 0.00 0.00 0.00 K jcn_only_AD CG1572,RI_chrX_11450380_11450442,I_chrX_11450380_11452520 chrX - chrX_11450380_11450442;chrX_11450380_11452565 chrX_11450380_11452571 chrX_11450280_11450379;chrX_11452572_11452620 95.79 96.18 95.48 95.43 96.97 96.43 97.45 95.76 96.92 94.98 97.61 95.79 97.25 96.67 92.20 96.38 97.41 97.09 96.15 95.99 96.63 95.75 94.74 96.32 95.92 97.04 94.41 93.84 94.82 94.25 96.69 94.82 95.32 96.69 96.31 95.88 96.28 96.28 97.49 94.23 95.38 96.40 97.27 95.35 93.32 95.69 95.21 95.18 95.46 95.60 95.31 96.40 93.94 94.21 96.41 95.36 95.48 95.07 K intron_retention Tsp42Ee,I_chr2R_2899841_2899895,RI_chr2R_2904593_2904783 chr2R + chr2R_2899841_2904517 chr2R_2899840_2899841;chr2R_2904517_2904518 chr2R_2899753_2899840;chr2R_2904518_2904592 18.18 NA NA NA NA NA 11.11 NA NA NA NA NA NA NA 25.00 41.67 NA NA NA NA NA 16.67 NA NA NA NA 25.00 17.65 18.18 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor bip2,RI_chr4_481674_487126,RI_chr4_483128_487126,RI_chr4_486609_487126 chr4 - chr4_486609_487126;chr4_485855_487126 chr4_485942_487126 chr4_487127_487226;chr4_485750_485854 88.89 92.86 87.50 72.73 85.71 90.00 90.24 91.67 86.96 85.71 88.89 86.84 100.00 90.00 86.96 87.10 87.50 64.71 90.00 85.29 88.24 NA 88.24 91.67 100.00 81.82 88.24 88.89 100.00 80.00 92.00 NA 100.00 87.50 100.00 100.00 100.00 92.86 92.86 90.00 NA 94.44 100.00 95.65 66.67 80.00 90.00 77.78 86.49 71.43 88.24 85.71 100.00 100.00 91.67 85.71 NA 66.67 N intron_retention stc chr2L + chr2L_15114214_15114448 chr2L_15114213_15114214;chr2L_15114448_15114449 chr2L_15114049_15114213;chr2L_15114449_15115753 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 76.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Pfk,I_chr2R_5999081_6000140,E_chr2R_6001157_6001630 chr2R + chr2R_6000676_6002421 chr2R_6000675_6000676;chr2R_6002421_6002422 chr2R_6000521_6000675;chr2R_6002422_6002610 43.75 NA NA NA NA NA 81.82 NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA 46.67 NA 46.15 NA 43.75 30.00 26.67 NA NA NA NA NA NA NA 32.00 35.29 29.17 50.00 NA NA NA 30.77 NA NA NA NA NA NA 43.75 60.00 NA NA NA NA NA NA K jcn_only_AA tral,I_chr3L_12512171_12512251 chr3L + chr3L_12511768_12511832 chr3L_12511768_12511829 chr3L_12511538_12511767;chr3L_12511833_12512170 12.50 10.45 13.33 15.85 11.76 13.50 11.16 10.07 10.87 12.78 12.69 13.95 11.72 12.30 15.64 9.64 17.73 13.01 12.50 12.59 14.05 11.96 9.73 12.33 10.55 14.38 10.43 14.29 12.36 11.70 15.50 16.22 14.01 9.17 15.16 17.04 12.61 11.46 12.86 10.33 9.80 12.14 14.94 13.65 7.99 10.11 8.78 15.52 15.87 8.44 9.77 10.93 14.18 10.16 16.24 11.87 13.72 13.94 K alternative_donor CG4502,I_chr2L_7196721_7196787,I_chr2L_7196858_7204207 chr2L - chr2L_7196858_7203942;chr2L_7196858_7203934 chr2L_7196858_7203938 chr2L_7196788_7196857;chr2L_7203943_7204239 72.73 75.00 78.57 73.68 83.33 76.92 71.43 76.19 72.41 NA 78.57 66.67 83.33 66.67 68.75 75.00 80.00 54.55 71.43 73.68 66.67 NA 66.67 66.67 NA 66.67 88.89 NA 66.67 75.00 76.92 71.43 69.23 71.43 75.00 72.73 NA NA 50.00 85.71 80.00 78.26 64.29 75.00 NA 82.35 71.43 65.22 60.00 71.43 72.73 77.78 NA NA 84.21 66.67 NA 66.67 K intron_retention Tapdelta chr2R - chr2R_7258219_7258277 chr2R_7258218_7258219;chr2R_7258277_7258278 chr2R_7257752_7258218;chr2R_7258278_7258694 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG16971,I_chr3L_225856_225909,RI_chr3L_225919_226004,noncoding_9600,RI_chr3L_229245_229590,I_chr3L_229245_229599,I_chr3L_229245_230186,I_chr3L_229653_229708 chr3L + chr3L_229245_229599 chr3L_229244_229245;chr3L_229599_229600 chr3L_229145_229244;chr3L_229600_229652 99.80 100.00 99.34 100.00 100.00 99.34 99.74 100.00 99.85 99.34 99.43 100.00 99.64 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.53 99.49 99.71 99.68 99.41 99.24 99.19 99.37 99.07 100.00 99.60 100.00 99.40 100.00 99.44 99.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.72 99.33 99.28 100.00 98.71 99.80 99.66 99.75 100.00 99.31 100.00 100.00 99.57 100.00 99.62 K jcn_only_AA CG7381,I_chr3R_8796541_8802728 chr3R - chr3R_8795968_8796044 chr3R_8795971_8796044 chr3R_8796045_8796162;chr3R_8795353_8795967 94.12 93.75 100.00 95.24 97.14 NA 100.00 94.64 93.41 NA 100.00 91.84 95.24 100.00 93.75 94.12 91.30 95.83 92.68 95.35 89.29 95.24 NA NA NA NA NA NA NA NA 97.67 95.45 93.75 97.73 91.67 NA 92.00 NA 92.59 100.00 NA 91.18 96.67 NA NA 93.94 NA 86.36 94.55 NA 90.62 NA NA 91.67 91.30 NA NA NA K intron_retention osa chr3R - chr3R_13523885_13523951 chr3R_13523884_13523885;chr3R_13523951_13523952 chr3R_13523703_13523884;chr3R_13523952_13524686 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_donor Aldolase,I_chr3R_22083764_22086684 chr3R - chr3R_22082030_22082256;chr3R_22082030_22082195 chr3R_22082030_22082575 chr3R_22081992_22082029 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,alpha4GT1,RI_chr2L_3022346_3022422,CG3605,CG17258 chr2L - chr2L_3022346_3022422 chr2L_3022369_3022422 chr2L_3022423_3022522;chr2L_3022246_3022345 98.57 94.44 97.65 97.17 100.00 98.25 99.06 100.00 99.33 98.57 100.00 100.00 100.00 100.00 96.55 96.70 98.11 97.10 100.00 99.21 89.58 100.00 94.67 100.00 100.00 100.00 96.83 100.00 100.00 97.83 96.15 100.00 97.06 100.00 97.83 95.92 100.00 100.00 96.97 98.67 98.00 98.61 95.00 98.57 98.15 100.00 96.67 98.08 96.40 98.36 100.00 98.08 92.31 100.00 100.00 94.74 98.73 100.00 K cassette CG11009,I_chr3L_12844823_12845526,I_chr3L_12845441_12845526 chr3L + chr3L_12845378_12845715 chr3L_12845378_12845529;chr3L_12845622_12845715 chr3L_12845530_12845621 chr3L_12845344_12845377;chr3L_12845716_12845816 68.85 72.22 70.83 56.63 57.14 70.59 36.36 50.00 65.71 44.44 54.55 69.23 95.00 62.50 55.00 57.58 78.95 50.00 66.67 54.90 55.56 96.97 66.67 70.00 60.00 60.00 82.86 73.91 91.67 76.92 59.09 72.92 81.82 77.42 80.00 88.89 66.67 61.54 76.19 86.11 66.67 59.46 83.33 80.77 76.92 68.85 73.81 66.67 63.16 70.69 75.68 63.64 75.00 74.07 62.50 68.00 86.21 64.29 K intron_retention kuk chr3R + chr3R_12908866_12908892 chr3R_12908865_12908866;chr3R_12908892_12908893 chr3R_12908386_12908865;chr3R_12908893_12910550 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG5745,I_chr3R_16928299_16928444 chr3R + chr3R_16928299_16928444 chr3R_16928384_16928444 chr3R_16928445_16928544;chr3R_16928199_16928298 100.00 97.78 100.00 100.00 100.00 95.45 100.00 96.55 100.00 100.00 100.00 97.92 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.51 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.57 100.00 100.00 98.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 96.00 97.37 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Abl,I_chr3L_16622304_16639909,RI_chr3L_16652567_16654512 chr3L - chr3L_16618375_16619627 chr3L_16618375_16619372 chr3L_16616737_16618374;chr3L_16619628_16619716 8.70 2.00 8.91 41.96 1.23 2.99 21.36 9.35 6.83 9.52 21.79 19.08 17.31 4.35 7.62 9.52 6.74 5.68 14.44 8.70 9.09 16.77 8.90 4.55 15.91 24.68 18.18 6.54 12.50 9.93 7.53 3.92 15.29 5.88 8.04 27.71 8.99 7.55 6.34 4.57 17.28 4.47 1.56 13.86 7.63 2.04 2.99 5.84 4.88 10.14 7.34 9.46 4.29 1.69 4.39 9.21 9.72 10.78 K jcn_only_AA CG1646,RI_chr3R_24638061_24638116,RI_chr3R_24638209_24638280,I_chr3R_24641816_24641874 chr3R + chr3R_24637877_24637948;chr3R_24637877_24637958 chr3R_24637877_24638116 chr3R_24637841_24637876;chr3R_24638117_24638208 93.07 90.16 87.13 88.97 89.87 94.12 75.68 91.67 92.11 93.33 89.41 97.77 85.45 90.91 93.07 87.21 91.18 92.47 87.78 93.70 92.77 82.35 90.91 89.66 92.19 86.14 91.07 84.31 95.58 97.46 88.10 95.80 99.05 93.10 92.75 92.31 96.07 91.86 92.92 94.08 98.67 92.31 93.65 95.05 98.25 98.06 95.40 96.55 96.89 94.12 96.20 95.24 93.94 100.00 94.57 93.33 93.75 97.77 K alternative_donor Gbeta13F,I_chrX_15754284_15755167,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15754284_15755256 chrX_15754356_15755256 chrX_15755257_15755267;chrX_15754256_15754283 50.00 NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Vap-33-1 chrX + chrX_3843206_3843513;chrX_3843210_3843513;chrX_3843406_3843513;chrX_3843214_3843513 chrX_3843099_3843513 chrX_3843514_3843746;chrX_3843030_3843098 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.45 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Tim9a chrX + chrX_13279629_13279693 chrX_13279628_13279629;chrX_13279693_13279694 chrX_13279533_13279628;chrX_13279694_13279946 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 12.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL37a,RE_chrX_15033150_15033287 chrX - chrX_15033148_15033284 chrX_15033147_15033148;chrX_15033284_15033285 chrX_15033050_15033147;chrX_15033285_15033449 0.14 0.09 0.14 0.16 0.07 0.18 0.39 0.13 0.16 0.19 0.19 0.08 0.15 0.15 0.12 0.14 0.15 0.05 0.09 0.15 0.07 0.25 0.13 0.18 0.39 0.48 0.21 0.35 0.41 0.07 0.29 0.22 0.10 0.13 0.22 0.74 0.10 0.04 0.10 0.12 0.51 0.14 0.07 0.09 0.33 0.13 0.13 0.25 0.22 0.14 0.22 0.19 0.06 0.11 0.15 0.12 0.14 0.08 K jcn_only_AA AGO2 chr3L + chr3L_15553679_15553749 chr3L_15553679_15553740 chr3L_15553308_15553678;chr3L_15553750_15553871 99.48 99.73 97.64 100.00 100.00 100.00 99.22 99.70 99.64 99.30 99.08 99.47 100.00 98.51 99.47 99.60 100.00 98.79 98.63 99.59 99.05 99.27 99.79 100.00 100.00 98.86 99.36 99.10 99.40 99.17 100.00 99.43 99.47 99.64 99.54 99.49 99.80 98.31 99.69 99.16 100.00 99.48 98.81 99.48 99.44 100.00 98.63 99.05 100.00 98.66 99.39 100.00 98.58 99.55 99.12 99.72 99.65 100.00 K intron_retention Rpt3 chrX + chrX_11019382_11019455 chrX_11019381_11019382;chrX_11019455_11019456 chrX_11019111_11019381;chrX_11019456_11019539 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention lva,CG6428 chrX - chrX_3850279_3850339 chrX_3850278_3850279;chrX_3850339_3850340 chrX_3850082_3850278;chrX_3850340_3850460 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17912,I_chr2L_16748617_16749055,I_chr2L_16749189_16749266 chr2L + chr2L_16746617_16749055 chr2L_16746616_16746617;chr2L_16749055_16749056 chr2L_16746227_16746616;chr2L_16749056_16749155 55.62 55.00 62.50 88.24 72.73 70.00 93.33 81.25 76.19 23.08 NA 55.00 NA 46.67 56.25 70.00 63.64 60.00 71.43 64.00 NA 41.38 44.12 34.48 50.00 88.89 57.14 25.00 17.65 58.82 60.00 NA NA 68.75 NA 46.67 45.00 44.83 33.33 30.00 NA 65.00 NA 50.00 36.36 87.50 33.33 52.94 65.00 38.46 52.17 70.59 35.71 NA 71.43 73.33 50.00 53.33 K intron_retention Ranbp16,I_chrX_15826655_15827277 chrX - chrX_15825836_15825916 chrX_15825835_15825836;chrX_15825916_15825917 chrX_15825340_15825835;chrX_15825917_15826019 100.00 100.00 100.00 98.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 98.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.31 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG7177 chr3L - chr3L_21537369_21537425 chr3L_21537368_21537369;chr3L_21537425_21537426 chr3L_21536998_21537368;chr3L_21537426_21537597 0.00 0.00 0.00 0.00 NA 0.00 7.14 2.94 0.00 NA NA 2.50 NA 6.25 0.00 0.00 NA 0.00 3.57 0.00 NA 0.00 0.00 0.00 NA 3.85 7.41 10.53 NA NA 0.00 0.00 NA 3.85 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 5.26 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 K cassette CG13900,I_chr3L_830745_830907 chr3L - chr3L_830342_830907 chr3L_830342_830621;chr3L_830729_830907 chr3L_830622_830728 chr3L_830034_830341;chr3L_830908_831007 15.36 12.85 14.19 12.96 14.50 14.44 5.81 17.85 12.13 10.85 15.36 11.89 13.94 15.98 14.66 20.08 14.71 11.21 16.17 13.89 12.85 18.26 14.10 15.69 5.90 4.55 18.58 25.29 9.72 15.91 36.19 23.49 16.48 13.87 16.34 5.44 12.44 14.35 13.36 17.72 9.96 12.28 13.86 16.26 19.89 17.84 21.78 21.40 17.73 22.13 19.73 21.70 17.62 15.98 14.37 22.05 19.16 24.77 K alternative_donor l(1)G0289,I_chrX_10254197_10254506,I_chrX_10254197_10259575 chrX - chrX_10254197_10260156 chrX_10254197_10254506 chrX_10254097_10254196;chrX_10260157_10260387 0.57 0.48 0.37 1.15 1.04 0.43 1.49 1.57 1.15 0.53 1.00 0.61 1.28 0.91 0.83 0.63 1.25 0.57 1.12 0.47 0.63 0.55 0.54 0.40 0.40 0.58 0.72 1.16 0.39 0.40 0.38 0.70 0.91 1.02 0.38 0.66 0.32 0.47 0.26 0.37 0.87 0.54 1.63 0.37 0.60 0.38 0.45 0.51 0.74 0.57 0.33 0.57 0.00 0.00 0.44 0.60 0.68 0.40 K intron_retention CG3635 chr2L + chr2L_22183467_22183607 chr2L_22183466_22183467;chr2L_22183607_22183608 chr2L_22183394_22183466;chr2L_22183608_22183915 40.89 37.93 28.04 28.26 36.92 38.96 54.36 30.43 41.43 55.22 35.00 41.10 40.43 45.33 33.61 42.11 36.59 30.59 38.54 40.89 33.33 25.13 32.09 41.35 52.05 39.71 36.18 40.26 53.57 40.19 36.07 46.43 32.23 36.64 34.44 62.67 54.63 45.71 42.22 44.81 47.22 35.68 32.81 53.15 35.40 47.17 45.39 48.90 41.01 35.29 44.96 50.85 41.90 45.26 43.69 43.36 39.75 43.45 N intron_retention CHES-1-like,I_chrX_7584030_7588818 chrX - chrX_7588919_7590509 chrX_7588918_7588919;chrX_7590509_7590510 chrX_7588819_7588918;chrX_7590510_7590564 100.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 93.85 NA 100.00 100.00 100.00 100.00 100.00 90.22 100.00 100.00 89.09 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA NA K alternative_donor alpha-Man-I,I_chrX_10218352_10219759,I_chrX_10218390_10219759 chrX - chrX_10218352_10219846;chrX_10218352_10219816;chrX_10218352_10219918;chrX_10218352_10219759;chrX_10218352_10219823;chrX_10218352_10219708 chrX_10218352_10219665 chrX_10218290_10218351;chrX_10219919_10219979 12.50 14.29 16.67 7.69 16.67 11.11 10.00 11.76 10.53 0.00 20.00 10.00 NA 11.11 12.50 14.29 16.67 16.67 12.50 14.29 16.67 11.11 12.50 14.29 14.29 28.57 12.50 NA NA 11.11 14.29 NA 14.29 16.67 NA 16.67 0.00 0.00 NA 12.50 0.00 15.38 25.00 0.00 NA 0.00 NA 22.22 13.33 0.00 20.00 0.00 20.00 NA 11.11 0.00 20.00 0.00 K intron_retention CG33558,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,I_chr2R_2820149_2820628,EI_chr2R_2820947_2821570,CREI_chr2R_2832933_2850384 chr2R - chr2R_2817876_2819347 chr2R_2817875_2817876;chr2R_2819347_2819348 chr2R_2817851_2817875;chr2R_2819348_2819447 76.92 65.00 88.89 50.00 NA NA NA NA 83.33 NA NA 72.41 NA 100.00 88.89 90.91 76.92 NA NA 73.08 NA 66.67 64.71 66.67 80.00 NA 75.00 NA 66.67 76.47 90.00 63.64 80.00 63.64 69.23 93.33 69.44 76.47 76.67 72.00 92.31 71.43 87.50 90.91 81.25 95.45 64.71 91.67 87.50 54.17 77.78 76.92 84.62 62.50 100.00 80.95 86.67 92.31 K alternative_donor CG18012 chr3R - chr3R_13635522_13635582 chr3R_13635522_13635579 chr3R_13635117_13635521;chr3R_13635583_13636140 99.38 100.00 100.00 100.00 98.57 98.61 98.81 100.00 99.32 100.00 100.00 100.00 100.00 100.00 98.80 98.48 98.25 100.00 100.00 99.36 100.00 98.11 98.63 100.00 100.00 98.28 98.77 100.00 100.00 97.87 100.00 97.92 99.02 100.00 97.83 98.15 98.28 100.00 99.20 100.00 98.00 99.38 98.41 98.68 100.00 98.68 98.85 100.00 97.52 100.00 98.41 100.00 100.00 100.00 98.72 100.00 98.94 100.00 K jcn_only_AA l(2)gl,I_chr2L_17213_21135,RI_chr2L_20021_20830,I_chr2L_20974_21065 chr2L - chr2L_20016_21065 chr2L_20021_21065 chr2L_21066_21106;chr2L_19921_20015 90.48 NA NA NA NA NA NA 90.48 88.89 NA NA 93.33 NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 86.96 NA NA NA NA NA NA NA NA NA 95.00 NA NA NA NA 91.67 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG11148,RI_chr4_886921_887162 chr4 - chr4_886921_887162;chr4_886921_887595;chr4_886921_887591 chr4_886921_887601 chr4_886821_886920;chr4_887602_887637 35.85 NA 31.25 45.76 25.58 16.67 35.71 44.12 35.82 NA 58.33 35.85 35.48 22.50 53.49 35.90 33.33 50.00 45.45 36.62 48.00 NA 33.33 NA 20.00 25.00 NA NA 25.81 NA 39.13 NA 31.82 44.26 NA 29.17 NA NA NA 31.25 NA 44.78 55.88 40.74 NA NA NA 40.38 29.47 NA 50.00 NA NA NA 31.71 NA NA 37.21 K jcn_only_AD CG1674,F_chr4_252231_252560,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_251522_252560;chr4_252254_252560 chr4_252227_252560 chr4_252561_252603;chr4_251483_251521 86.96 NA NA NA NA NA NA 86.96 95.45 NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Socs16D chrX - chrX_17717337_17717410 chrX_17717336_17717337;chrX_17717410_17717411 chrX_17717224_17717336;chrX_17717411_17719514 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.88 1.43 0.00 0.00 0.00 0.00 2.44 6.35 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Xrp1,I_chr3R_14741648_14750799,I_chr3R_14750298_14750799 chr3R + chr3R_14745235_14746134 chr3R_14745234_14745235;chr3R_14746134_14746135 chr3R_14745145_14745234;chr3R_14746135_14747041 2.90 2.37 2.35 1.45 3.15 1.39 15.46 3.36 4.09 3.25 3.38 3.27 2.27 2.23 4.00 3.68 4.73 2.58 3.70 4.40 4.67 5.29 2.80 1.71 4.33 2.46 3.43 10.08 6.59 4.11 0.75 2.45 1.96 4.32 2.33 2.94 3.96 2.15 2.64 2.53 2.26 3.37 3.90 2.44 2.70 1.79 1.12 2.90 4.11 1.09 3.70 1.74 0.00 2.24 3.96 2.53 2.97 2.08 K jcn_only_AA R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083637_8089393 chr2L_8083637_8089184 chr2L_8083592_8083636;chr2L_8089394_8089493 60.72 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 71.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor E(bx),I_chr3L_246324_246699 chr3L - chr3L_246324_246885;chr3L_246324_246438;chr3L_246324_246408;chr3L_246324_246794;chr3L_246324_246388;chr3L_246324_246427 chr3L_246324_246382 chr3L_246224_246323;chr3L_246886_246901 45.30 38.10 52.00 51.28 42.11 37.50 41.82 43.75 41.54 46.15 47.62 48.08 44.12 30.77 44.44 39.62 44.00 45.45 45.16 47.06 38.10 52.63 50.00 43.75 37.50 41.67 56.00 40.00 50.00 50.00 40.62 33.33 56.25 43.40 46.67 33.33 52.00 53.85 43.75 59.26 50.00 46.94 39.29 62.50 NA 50.00 50.00 50.00 40.68 25.00 37.93 50.00 25.00 100.00 50.00 60.00 50.00 33.33 K intron_retention aux chr3R + chr3R_47709_47779 chr3R_47708_47709;chr3R_47779_47780 chr3R_47502_47708;chr3R_47780_47919 0.00 1.56 0.00 3.85 0.00 0.00 2.33 1.23 0.00 0.00 2.13 1.89 0.00 0.00 0.00 1.32 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 2.50 4.92 2.11 0.00 1.67 0.00 0.00 0.00 2.38 2.22 0.00 7.02 0.00 0.00 1.20 0.00 0.00 1.65 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 2.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD 4EHP,RI_chr3R_19927769_19928262,Syx1A chr3R - chr3R_19927769_19932546;chr3R_19927769_19928262 chr3R_19927769_19929293 chr3R_19927676_19927768;chr3R_19932547_19933006 97.98 100.00 98.04 97.67 91.84 97.78 97.73 96.67 96.99 NA NA 98.75 100.00 98.04 98.08 92.86 98.48 95.24 95.92 93.67 NA 94.74 98.41 100.00 100.00 100.00 97.92 92.00 95.45 96.00 98.11 NA 97.78 98.88 100.00 92.86 100.00 96.23 95.45 97.26 NA 98.80 100.00 98.41 96.88 100.00 100.00 96.49 98.85 NA 97.62 95.92 100.00 NA 100.00 100.00 97.50 100.00 K alternative_acceptor CG11107 chr2R + chr2R_3276687_3276751 chr2R_3276687_3276748 chr2R_3276213_3276686;chr2R_3276752_3277015 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14199 chrX - chrX_19388685_19388759 chrX_19388684_19388685;chrX_19388759_19388760 chrX_19388395_19388684;chrX_19388760_19388869 3.85 2.56 3.48 11.11 4.11 4.44 19.28 2.17 4.57 2.08 7.14 4.82 3.39 2.22 3.85 3.74 0.00 4.39 1.09 4.46 5.43 22.86 3.54 1.45 11.94 11.58 10.91 3.17 9.78 2.94 5.45 3.45 3.70 3.10 2.53 11.59 4.55 2.86 5.81 5.20 4.35 3.43 2.78 3.03 3.37 2.35 4.55 1.98 3.70 3.74 8.08 3.12 4.58 4.12 6.78 4.29 4.60 0.64 K intron_retention CG17549,I_chr2L_19387937_19387993,I_chr2L_19388570_19389922 chr2L - chr2L_19387770_19387861 chr2L_19387769_19387770;chr2L_19387861_19387862 chr2L_19387538_19387769;chr2L_19387862_19387936 27.27 36.84 43.75 15.38 23.53 38.89 29.17 47.83 38.78 34.00 59.09 31.03 33.33 40.00 52.38 58.33 NA 68.75 40.00 26.09 50.00 16.46 14.29 18.97 22.22 35.29 14.06 10.47 19.18 27.27 50.00 30.00 35.56 21.05 26.32 27.59 16.13 25.00 14.10 38.64 26.19 27.27 NA 21.31 18.00 31.37 13.91 50.00 32.35 3.30 31.58 26.09 13.21 20.41 36.36 7.55 7.25 20.00 N alternative_donor CG32594 chrX + chrX_14927496_14927638;chrX_14927381_14927638;chrX_14926607_14927638 chrX_14927033_14927638 chrX_14927639_14928125;chrX_14925576_14926606 0.80 1.05 1.13 0.00 0.00 0.62 1.66 0.50 0.80 0.93 0.00 0.77 2.73 1.02 1.12 1.63 0.76 0.00 0.00 0.29 0.00 12.63 0.48 0.50 1.77 0.00 1.06 1.94 1.32 0.93 0.00 0.00 0.00 1.25 0.78 1.41 0.76 1.09 0.84 0.38 0.66 0.38 0.85 1.11 0.83 0.39 1.05 0.61 0.83 1.38 0.92 2.11 0.74 0.62 0.00 1.23 0.61 1.12 K alternative_donor mfrn,I_chr3R_23770737_23770817,I_chr3R_23771063_23772599 chr3R - chr3R_23770737_23770817 chr3R_23770737_23770798 chr3R_23770669_23770736;chr3R_23770818_23770917 100.00 98.33 100.00 97.96 97.50 97.67 98.51 100.00 99.02 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.57 100.00 100.00 98.95 100.00 98.44 100.00 98.82 100.00 100.00 98.04 98.67 100.00 97.87 100.00 100.00 100.00 100.00 100.00 99.06 98.96 98.04 98.72 100.00 100.00 97.83 100.00 98.53 97.30 100.00 98.82 98.80 98.04 100.00 100.00 97.83 98.18 98.86 100.00 K intron_retention Pdp,RI_chrX_7626915_7627016,RI_chrX_7626915_7627048 chrX - chrX_7626915_7627020 chrX_7626914_7626915;chrX_7627020_7627021 chrX_7626815_7626914;chrX_7627021_7627116 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 8.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG5953,snoRNA:Me28S-C1237 chr2L - chr2L_16528440_16532720;chr2L_16528440_16532707 chr2L_16528440_16532458 chr2L_16527390_16528439;chr2L_16532721_16532862 7.41 NA 9.09 NA NA NA 28.57 10.53 12.00 NA 0.00 0.00 NA NA 7.69 13.33 NA NA 7.14 7.41 0.00 NA 10.00 NA NA NA 11.11 12.50 NA 0.00 10.00 NA NA 4.76 0.00 NA NA NA 0.00 7.69 NA 7.41 11.11 8.33 NA 0.00 0.00 4.00 10.00 NA 9.09 NA NA 0.00 NA 0.00 NA 0.00 K intron_retention CG9715 chr3L + chr3L_16838610_16838667 chr3L_16838609_16838610;chr3L_16838667_16838668 chr3L_16838475_16838609;chr3L_16838668_16838989 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 1.56 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG11334,I_chr3R_27286879_27286943,I_chr3R_27286879_27287189,I_chr3R_27287691_27288117,F_chr3R_27287720_27288551 chr3R - chr3R_27286879_27287535 chr3R_27286879_27286943 chr3R_27286779_27286878;chr3R_27287536_27287684 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Dyrk3,I_chr4_1231226_1233305,I_chr4_1233845_1234170 chr4 - chr4_1233242_1233305 chr4_1233241_1233242;chr4_1233305_1233306 chr4_1232379_1233241;chr4_1233306_1233405 0.00 0.00 0.00 16.22 NA 0.00 9.52 13.89 12.00 NA 0.00 11.43 2.63 0.00 0.00 16.67 0.00 7.14 3.57 0.00 NA NA NA NA NA 4.76 6.25 NA NA 0.00 8.00 NA 0.00 9.26 NA 0.00 NA NA NA 0.00 NA 2.27 0.00 NA NA NA NA 0.00 10.53 NA 0.00 NA NA NA 0.00 NA 0.00 NA K jcn_only_AA CG8596,I_chr3L_7336128_7336203,RI_chr3L_7336707_7336767,I_chr3L_7337046_7338155,I_chr3L_7340885_7340945 chr3L - chr3L_7336707_7336767 chr3L_7336711_7336767 chr3L_7336768_7336867;chr3L_7336607_7336706 95.72 96.67 100.00 100.00 98.39 100.00 95.56 96.55 90.65 95.00 100.00 99.08 100.00 94.34 96.23 96.61 91.89 93.75 96.97 94.96 96.30 94.52 97.73 96.00 97.44 95.12 89.36 NA 97.50 92.16 87.88 94.92 96.34 94.29 100.00 97.62 97.40 94.00 96.83 95.65 95.12 95.24 96.88 90.77 93.75 95.12 88.89 94.34 95.79 97.30 90.77 97.78 95.83 95.45 98.63 91.67 95.12 93.15 K intron_retention Adgf-A chr3L - chr3L_17746418_17746566 chr3L_17746417_17746418;chr3L_17746566_17746567 chr3L_17746235_17746417;chr3L_17746567_17747521 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG2118,I_chr3R_27618369_27618426,I_chr3R_27619193_27619598 chr3R - chr3R_27618369_27618426 chr3R_27618373_27618426 chr3R_27618427_27618526;chr3R_27618269_27618368 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 NA 95.00 97.73 100.00 100.00 100.00 96.30 100.00 100.00 100.00 98.33 100.00 NA 96.67 100.00 NA 100.00 96.97 NA NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 96.88 NA 100.00 96.43 100.00 95.24 96.88 NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 90.00 NA NA K intron_retention Ctr1A,I_chrX_6557804_6559032,I_chrX_6558480_6559032 chrX + chrX_6555835_6559032 chrX_6555834_6555835;chrX_6559032_6559033 chrX_6555724_6555834;chrX_6559033_6559111 2.38 0.00 6.25 7.41 0.00 NA 12.12 4.76 3.90 4.65 0.00 0.00 0.00 0.00 0.00 4.76 0.00 14.29 10.53 3.45 7.14 0.00 5.26 0.00 NA NA 4.17 0.00 0.00 0.00 4.55 NA 2.38 0.00 0.00 23.08 1.15 0.00 0.00 2.86 NA 6.25 5.88 2.99 NA 9.09 0.00 0.00 6.67 4.26 5.71 0.00 0.00 0.00 8.33 0.00 1.37 4.44 K intron_retention CG4290,RI_chrX_1954878_1955077,I_chrX_1962457_1964222 chrX - chrX_1950059_1950152 chrX_1950058_1950059;chrX_1950152_1950153 chrX_1949990_1950058;chrX_1950153_1950243 0.00 NA NA 7.41 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA 9.68 0.00 NA NA NA NA NA 4.17 NA NA NA NA NA NA 0.00 6.67 NA 12.50 0.00 NA 5.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 4.76 NA NA NA 0.00 0.00 K jcn_only_AA RpS3A,I_chr4_87364_87465,I_chr4_87533_87717,I_chr4_87549_87717,I_chr4_87549_87769 chr4 - chr4_87648_87717;chr4_87533_87717 chr4_87549_87717 chr4_87718_87817;chr4_87466_87532 12.90 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.90 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG13585,I_chr2R_20419710_20419962,E_chr2R_20420167_20420418 chr2R + chr2R_20419902_20419962 chr2R_20419901_20419902;chr2R_20419962_20419963 chr2R_20419877_20419901;chr2R_20419963_20420062 23.08 NA NA 36.36 25.00 NA 23.08 18.18 19.05 13.33 33.33 20.00 45.45 NA 25.00 15.38 NA 21.05 NA 30.00 35.71 6.90 54.55 20.00 60.00 NA NA NA NA NA NA NA NA 31.25 NA NA 19.05 NA 29.41 28.57 NA 24.14 NA NA 30.77 NA 11.11 NA 29.63 20.00 25.00 23.08 15.38 0.00 NA NA 12.50 16.67 K alternative_acceptor CG5746 chr3R - chr3R_20172475_20172538 chr3R_20172483_20172538 chr3R_20172539_20172607;chr3R_20172414_20172474 100.00 100.00 97.92 98.59 97.37 100.00 98.21 98.46 99.03 100.00 97.30 100.00 100.00 100.00 100.00 97.96 100.00 97.83 100.00 100.00 100.00 98.61 100.00 100.00 100.00 100.00 98.65 100.00 97.92 98.72 100.00 100.00 99.18 100.00 100.00 100.00 100.00 98.31 99.02 100.00 100.00 100.00 100.00 100.00 98.75 98.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.33 100.00 100.00 K intron_retention mnd chr3L + chr3L_14983168_14983245 chr3L_14983167_14983168;chr3L_14983245_14983246 chr3L_14982949_14983167;chr3L_14983246_14983841 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.71 0.00 0.00 2.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.15 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 1.89 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CkIIbeta,I_chrX_11686847_11687475,I_chrX_11687161_11687475,I_chrX_11689220_11690898 chrX + chrX_11686979_11687475;chrX_11686948_11687475;chrX_11687313_11687475 chrX_11687025_11687475 chrX_11687476_11687551;chrX_11686929_11686947 6.25 8.70 4.17 11.63 5.56 9.09 5.56 10.87 9.52 0.00 0.00 13.33 12.50 7.69 7.69 2.04 12.50 0.00 8.33 12.77 4.76 6.25 8.70 6.67 11.11 8.33 7.14 0.00 0.00 4.76 6.45 0.00 0.00 6.67 5.88 0.00 0.00 0.00 0.00 5.26 0.00 6.12 7.14 13.64 0.00 7.69 9.52 3.70 9.09 15.38 16.67 6.25 6.25 0.00 10.26 0.00 10.00 4.76 K cassette Adar,I_chrX_1668256_1682696,I_chrX_1674594_1674717 chrX + chrX_1674859_1676968 chrX_1674859_1675750;chrX_1675917_1676968 chrX_1675751_1675916 chrX_1674718_1674858;chrX_1676969_1677068 50.00 52.63 78.95 87.50 50.00 50.00 47.37 81.82 51.28 58.82 54.55 38.46 NA 43.75 56.25 60.87 57.14 57.89 50.00 56.00 63.64 19.05 41.38 58.82 40.00 15.38 35.00 42.86 16.67 47.06 40.62 44.44 35.00 62.96 42.86 87.50 63.16 35.00 35.00 39.29 50.00 40.00 38.46 45.83 NA 50.00 58.33 37.04 53.33 30.77 54.55 35.71 50.00 50.00 43.75 50.00 87.50 53.33 K intron_retention Pegarn chr3L + chr3L_12783483_12784534 chr3L_12783482_12783483;chr3L_12784534_12784535 chr3L_12783465_12783482;chr3L_12784535_12784733 15.79 NA NA NA NA NA NA NA 15.79 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention MP1,RI_chr3R_134150_134311 chr3R + chr3R_134150_134311 chr3R_134149_134150;chr3R_134311_134312 chr3R_134050_134149;chr3R_134312_134411 60.20 63.64 70.00 52.78 NA NA 57.14 62.07 79.17 NA NA 55.00 NA 72.73 75.00 75.00 78.57 88.89 66.67 50.00 58.33 90.00 56.25 66.67 NA 33.33 53.85 NA NA NA 90.00 81.82 63.64 82.61 25.00 45.45 NA NA NA 78.95 37.50 54.17 NA NA 35.71 57.89 NA 46.15 70.83 50.00 50.00 NA NA 47.37 64.29 50.00 69.23 58.33 K alternative_acceptor rgr,I_chr2R_4488735_4489955 chr2R + chr2R_4496027_4496559 chr2R_4496027_4496554 chr2R_4495817_4496026;chr2R_4496560_4496899 95.83 94.12 100.00 100.00 100.00 100.00 100.00 92.31 95.24 100.00 100.00 93.75 87.50 100.00 100.00 100.00 88.89 90.00 100.00 95.83 100.00 96.43 94.12 95.83 96.30 93.33 92.00 95.65 94.44 95.45 93.75 100.00 94.74 100.00 96.30 100.00 96.43 95.00 97.14 96.30 90.00 95.65 100.00 95.83 88.24 96.43 96.43 94.59 92.31 95.83 96.77 95.00 93.33 96.00 100.00 95.00 92.86 100.00 K cassette CG18317,RI_chr2L_1718492_1723881,I_chr2L_1718904_1718995,RI_chr2L_1718904_1724234 chr2L - chr2L_1718492_1723881 chr2L_1718492_1718674;chr2L_1718904_1723881 chr2L_1718675_1718903 chr2L_1718421_1718491;chr2L_1723882_1723981 98.65 97.96 100.00 94.12 100.00 100.00 100.00 97.56 98.53 98.72 100.00 97.10 100.00 95.83 100.00 100.00 96.15 100.00 100.00 97.62 100.00 94.74 100.00 98.41 100.00 96.43 100.00 98.51 98.44 100.00 100.00 97.62 98.65 98.04 100.00 100.00 100.00 98.28 98.86 98.41 100.00 98.46 90.48 100.00 98.36 98.28 98.28 100.00 98.25 97.78 100.00 100.00 97.62 97.73 97.14 100.00 100.00 98.48 K intron_retention kst,I_chr3L_3365752_3365816,I_chr3L_3367008_3367514 chr3L + chr3L_3366311_3367514 chr3L_3366310_3366311;chr3L_3367514_3367515 chr3L_3366200_3366310;chr3L_3367515_3367614 9.63 11.24 14.92 42.86 12.32 13.48 7.41 12.44 11.89 3.41 3.50 10.40 7.45 12.62 10.94 47.17 9.24 6.90 9.52 8.10 6.10 8.64 11.73 10.50 15.04 5.00 15.29 10.53 6.06 19.48 12.50 5.30 6.13 9.55 12.50 12.10 12.87 12.36 10.00 9.62 7.32 9.66 7.69 7.94 2.30 9.35 8.72 6.91 8.37 9.63 12.06 14.06 8.45 10.98 6.89 9.69 7.95 7.72 K multi_cassette CG11266,RI_chr2L_7033019_7033182,RI_chr2L_7033019_7034180,RI_chr2L_7033019_7034764,I_chr2L_7034274_7034764,I_chr2L_7034274_7035406,I_chr2L_7051093_7051366 chr2L + chr2L_7033019_7034764 chr2L_7033019_7034198;chr2L_7034274_7034483;chr2L_7034694_7034764 chr2L_7034199_7034273;chr2L_7034484_7034693 chr2L_7032919_7033018;chr2L_7034765_7034823 92.31 NA NA NA NA NA NA 90.00 90.91 100.00 100.00 90.00 100.00 100.00 75.00 85.71 100.00 NA 100.00 100.00 NA NA 80.00 100.00 NA NA NA NA 71.43 88.89 92.31 100.00 81.82 100.00 NA NA 75.00 NA 100.00 90.91 83.33 77.78 100.00 87.50 100.00 90.00 NA 95.00 84.62 100.00 75.00 100.00 NA NA 83.33 100.00 NA 94.12 K intron_retention S6k,I_chr3L_5800361_5803389,RI_chr3L_5801924_5803389 chr3L - chr3L_5800361_5800640 chr3L_5800360_5800361;chr3L_5800640_5800641 chr3L_5800311_5800360;chr3L_5800641_5800709 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 97.50 NA 100.00 100.00 100.00 100.00 NA 100.00 96.30 100.00 100.00 97.73 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 NA 100.00 100.00 93.75 96.88 100.00 96.77 92.86 100.00 100.00 100.00 100.00 100.00 100.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2389272_2395659 chrX_2389272_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2393243;chrX_2393712_2394269;chrX_2394396_2395151;chrX_2395275_2395659 chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521;chrX_2393244_2393711;chrX_2394270_2394395;chrX_2395152_2395274 chrX_2389172_2389271;chrX_2395660_2395759 33.33 NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette Ac3,I_chr2L_21643253_21646594 chr2L + chr2L_21643253_21646594 chr2L_21643253_21643763;chr2L_21644220_21646594 chr2L_21643764_21644219 chr2L_21643170_21643252;chr2L_21646595_21646694 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 85.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 93.33 100.00 100.00 93.75 100.00 100.00 94.74 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention caz,RI_chrX_16183356_16185973 chrX + chrX_16186144_16186227 chrX_16186143_16186144;chrX_16186227_16186228 chrX_16185974_16186143;chrX_16186228_16186676 0.94 1.53 1.54 0.81 0.99 1.30 2.74 1.57 2.12 0.00 0.00 1.32 0.58 1.17 1.06 1.79 0.54 0.64 1.74 0.94 0.44 0.19 1.40 0.49 0.85 1.03 1.99 1.92 0.26 0.32 0.31 0.52 0.64 1.55 0.52 1.08 0.49 0.59 0.62 0.83 0.80 1.52 1.99 0.83 0.66 1.00 1.06 0.21 1.58 0.54 1.13 0.00 0.95 1.15 0.95 0.99 0.76 0.55 N alternative_acceptor Tsp42Ed chr2R - chr2R_2897806_2897936 chr2R_2897868_2897936 chr2R_2897937_2898098;chr2R_2897608_2897805 1.95 1.90 2.78 3.97 0.70 2.78 2.40 1.83 2.32 2.45 2.68 1.85 2.15 2.00 2.34 1.59 1.80 2.42 3.40 1.74 1.40 1.96 1.97 2.28 1.36 4.26 2.34 1.17 0.94 2.60 3.01 2.05 0.82 2.83 2.56 2.51 1.43 0.72 2.49 2.48 1.87 1.95 1.82 1.74 1.93 1.62 1.33 1.71 2.78 1.90 2.92 1.33 0.90 3.77 1.83 1.54 1.52 1.45 K jcn_only_AA Gpo-1,I_chr2R_11747621_11747699,EI_chr2R_11747445_11747699,I_chr2R_11749758_11750187,I_chr2R_11756325_11756380 chr2R - chr2R_11747621_11747699 chr2R_11747625_11747699 chr2R_11747700_11747768;chr2R_11747521_11747620 98.22 97.25 98.61 97.14 100.00 100.00 96.97 100.00 99.14 97.37 100.00 98.44 100.00 95.24 100.00 98.08 100.00 100.00 100.00 100.00 100.00 96.93 97.06 97.89 96.73 98.08 99.20 98.31 97.62 96.58 96.47 94.74 98.86 98.53 99.11 97.67 96.41 98.17 98.21 94.08 99.28 98.15 100.00 94.63 98.62 96.39 98.22 97.16 100.00 97.53 98.25 97.83 98.63 98.40 100.00 96.39 98.95 95.52 K intron_retention simj,I_chr3L_10680263_10680313 chr3L + chr3L_10678995_10679063 chr3L_10678994_10678995;chr3L_10679063_10679064 chr3L_10678110_10678994;chr3L_10679064_10679346 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.34 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pnn chr3R + chr3R_5567691_5567921 chr3R_5567690_5567691;chr3R_5567921_5567922 chr3R_5566921_5567690;chr3R_5567922_5568054 80.00 88.89 78.57 87.88 NA 88.89 91.30 71.88 80.77 NA 72.73 89.29 71.43 76.47 75.00 85.71 90.00 87.50 81.25 75.00 NA NA 87.50 90.00 NA 84.62 80.00 NA 75.00 50.00 80.00 69.23 63.64 80.00 72.73 NA NA NA NA 82.61 88.46 80.00 56.25 NA 87.50 87.50 66.67 88.89 78.79 NA NA NA NA NA 92.86 77.78 90.00 75.86 K intron_retention CG8232 chr2R + chr2R_4816384_4816440 chr2R_4816383_4816384;chr2R_4816440_4816441 chr2R_4816214_4816383;chr2R_4816441_4817702 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 1.75 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG5284,I_chr3L_16086347_16086804 chr3L + chr3L_16083622_16084615 chr3L_16084019_16084615 chr3L_16084616_16084958;chr3L_16083606_16083621 96.43 96.04 89.92 91.85 96.51 93.98 97.30 95.50 91.46 93.97 94.12 94.89 89.29 93.40 99.14 97.75 97.22 95.29 93.62 94.17 97.92 96.24 99.00 94.93 96.88 97.78 96.69 92.66 99.49 96.99 97.96 95.24 95.12 91.67 95.60 99.20 91.02 97.60 95.95 96.17 98.53 92.89 91.03 99.25 94.25 97.12 98.89 98.15 98.31 96.70 96.99 98.04 96.72 95.12 98.15 98.73 97.37 96.43 K intron_retention Dredd,RI_chrX_529342_529426 chrX - chrX_528521_528596 chrX_528520_528521;chrX_528596_528597 chrX_528452_528520;chrX_528597_528617 100.00 NA NA 100.00 NA NA 88.89 100.00 91.67 NA NA 100.00 NA NA NA 100.00 NA 100.00 NA 92.31 NA NA NA NA NA NA NA NA 100.00 90.00 93.75 100.00 100.00 100.00 NA NA NA NA NA 94.12 91.67 100.00 NA 92.31 NA 93.75 NA 94.74 93.75 NA 100.00 NA NA NA 88.89 100.00 100.00 100.00 K intron_retention CG9577,CG9578 chrX + chrX_20061849_20061914 chrX_20061848_20061849;chrX_20061914_20061915 chrX_20061224_20061848;chrX_20061915_20062160 1.15 2.53 0.00 10.81 0.00 0.00 2.63 0.00 0.00 3.23 0.00 1.74 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.63 0.00 3.57 4.88 3.49 2.70 16.95 5.63 6.90 17.78 0.00 2.35 6.90 0.00 1.00 0.00 3.70 1.52 0.00 3.19 4.94 5.71 0.00 0.00 0.00 0.00 1.79 0.00 0.00 4.60 1.12 1.15 0.00 0.00 1.80 2.53 2.15 2.08 5.66 K alternative_acceptor CG11334,I_chr3R_27287685_27288551,I_chr3R_27287691_27288117,F_chr3R_27287720_27288551,RI_chr3R_27288047_27288117 chr3R - chr3R_27287685_27288551 chr3R_27287691_27288551 chr3R_27288552_27288651;chr3R_27287620_27287684 97.77 100.00 95.24 96.55 94.74 93.94 95.45 95.65 97.87 91.67 100.00 97.62 100.00 96.00 100.00 92.86 93.75 92.31 100.00 98.39 100.00 NA 97.14 97.06 100.00 97.06 100.00 100.00 100.00 92.86 100.00 100.00 100.00 97.56 95.65 96.00 93.33 96.43 97.67 100.00 100.00 98.15 95.45 100.00 96.43 96.30 100.00 95.65 98.08 100.00 100.00 100.00 100.00 97.06 96.77 100.00 98.11 100.00 K cassette Ppn,F_chr3R_24347009_24347078 chr3R - chr3R_24348983_24349755;chr3R_24349420_24349755 chr3R_24348983_24349501,chr3R_24349420_24349501;chr3R_24349697_24349755 chr3R_24349502_24349696 chr3R_24348417_24348982;chr3R_24349756_24349939 40.62 45.00 27.03 28.95 39.39 40.62 19.23 26.76 38.46 38.46 33.33 27.85 22.22 30.30 30.23 50.00 27.59 40.00 35.71 41.59 34.38 35.29 50.98 53.49 32.43 20.00 53.85 36.36 27.59 43.75 39.13 46.67 54.55 36.96 44.44 42.86 46.77 57.14 60.78 43.33 35.71 31.71 24.24 44.00 45.45 55.56 55.00 45.45 35.53 44.44 55.81 66.67 56.52 50.00 35.14 57.58 60.47 42.11 N cassette spin,I_chr2R_12013288_12013847 chr2R + chr2R_12019405_12023531 chr2R_12019405_12019813;chr2R_12020141_12023531 chr2R_12019814_12020140 chr2R_12019047_12019404;chr2R_12023532_12023630 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.05 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette CG15715,RI_chr3L_15829349_15830356,I_chr3L_15830026_15830356,RI_chr3L_15830030_15830191,RI_chr3L_15830229_15830356 chr3L - chr3L_15829349_15830356 chr3L_15829349_15829879;chr3L_15830026_15830356 chr3L_15829880_15830025 chr3L_15829249_15829348;chr3L_15830357_15830456 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD bif,I_chrX_11581793_11583233 chrX + chrX_11573223_11574876 chrX_11573323_11574876 chrX_11574877_11575147;chrX_11573031_11573222 95.24 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 95.24 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Alr chrX + chrX_19643663_19643721 chrX_19643662_19643663;chrX_19643721_19643722 chrX_19643421_19643662;chrX_19643722_19644199 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.41 0.00 0.00 0.00 5.88 0.00 12.50 0.00 5.26 0.00 0.00 0.00 0.00 0.00 7.50 0.00 3.45 0.00 0.00 4.00 9.59 4.11 3.70 0.00 8.33 6.56 2.63 0.00 0.00 0.00 0.00 3.90 7.29 1.69 7.14 0.00 0.00 7.81 0.00 6.52 1.25 5.26 2.53 1.41 9.38 0.00 2.86 0.00 6.85 0.00 4.08 K intron_retention ps,I_chr3R_5243723_5265067,I_chr3R_5243723_5270765,noncoding_15575,I_chr3R_5245770_5265067,I_chr3R_5245770_5269732,I_chr3R_5258562_5264836,I_chr3R_5262841_5265067,RI_chr3R_5262841_5266402,I_chr3R_5265428_5266402,I_chr3R_5265428_5269732,I_chr3R_5265428_5270765,CG16777,I_chr3R_5269733_5270765 chr3R + chr3R_5243723_5257750 chr3R_5243722_5243723;chr3R_5257750_5257751 chr3R_5243705_5243722;chr3R_5257751_5258205 23.08 NA NA 30.43 NA NA 31.25 21.43 18.75 NA NA 22.22 11.11 23.08 NA 28.57 NA NA 30.77 12.82 NA 42.86 NA NA NA NA NA NA NA NA NA NA 23.53 16.67 NA NA NA NA NA NA NA 25.00 30.77 NA NA NA NA NA 9.52 NA NA NA NA NA 15.38 NA NA NA K intron_retention Trf2,I_chrX_8318346_8318408 chrX + chrX_8317703_8317760 chrX_8317702_8317703;chrX_8317760_8317761 chrX_8317687_8317702;chrX_8317761_8318068 50.00 46.15 NA 69.23 30.77 NA 40.74 33.33 50.00 NA NA 36.36 46.15 40.00 58.33 61.11 NA 47.06 41.67 48.00 NA 35.29 50.00 NA NA 50.00 61.11 NA NA NA 53.85 NA NA 52.00 NA NA NA NA NA NA NA 56.52 50.00 57.69 NA NA NA 60.00 50.00 NA 40.00 NA NA NA 50.00 NA NA NA K alternative_acceptor Uch,CG10880 chr2L - chr2L_2213757_2213895 chr2L_2213781_2213895 chr2L_2213896_2213958;chr2L_2213616_2213756 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Hcs,I_chr3R_1303481_1304607 chr3R + chr3R_1303481_1304607 chr3R_1303480_1303481;chr3R_1304607_1304608 chr3R_1303381_1303480;chr3R_1304608_1304625 36.03 NA NA 28.57 NA NA 28.57 NA 42.86 NA NA 33.33 NA NA NA 50.00 NA 7.14 NA 47.06 NA 72.73 37.50 35.71 NA NA 46.67 NA NA 41.67 NA NA NA 46.15 NA NA 22.22 13.33 22.22 30.00 NA 46.15 NA NA NA NA NA NA 22.22 36.36 40.00 35.71 NA NA NA NA NA NA K intron_retention CG5554,gbb chr2R + chr2R_19733220_19733288 chr2R_19733219_19733220;chr2R_19733288_19733289 chr2R_19733058_19733219;chr2R_19733289_19733463 0.27 0.28 0.00 1.12 0.00 0.00 0.00 0.78 0.00 0.55 0.00 0.00 0.00 0.00 0.72 0.54 0.00 0.00 0.54 0.50 0.00 0.00 0.51 0.00 1.15 1.42 1.03 1.44 2.19 0.34 0.37 0.71 0.00 0.00 0.00 1.38 0.00 0.00 0.34 0.00 1.30 0.64 0.00 0.00 0.87 1.55 0.00 0.87 0.52 0.56 0.27 0.00 0.00 0.00 1.62 0.47 0.00 0.00 N cassette Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16107821_16110644;chr3L_16108931_16110644 chr3L_16108931_16109131,chr3L_16107821_16109131;chr3L_16109720_16110644 chr3L_16109132_16109719 chr3L_16107721_16107820;chr3L_16110645_16111208 94.05 91.94 96.97 93.10 86.67 83.33 85.51 92.65 95.42 97.78 86.27 93.97 92.86 93.88 98.28 97.06 88.37 96.30 97.92 90.07 91.30 92.34 94.50 89.74 91.67 94.44 93.33 96.47 99.10 95.33 95.56 97.06 96.30 94.05 94.92 88.30 90.38 92.13 94.35 96.71 89.39 93.33 90.91 93.46 95.10 94.74 97.92 96.61 92.86 92.45 96.34 95.74 98.28 97.62 95.08 87.93 95.24 92.68 K intron_retention Unc-76,RI_chrX_1983640_1985001,I_chrX_2002576_2003165 chrX + chrX_1985767_1985834 chrX_1985766_1985767;chrX_1985834_1985835 chrX_1985551_1985766;chrX_1985835_1985924 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 4.65 7.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor RI_chr2R_3817895_3817951,rnh1,RI_chr2R_3819348_3819403 chr2R - chr2R_3819348_3819403 chr2R_3819352_3819403 chr2R_3819404_3819460;chr2R_3819248_3819347 97.30 96.88 100.00 97.62 95.45 100.00 96.55 97.44 97.96 96.77 100.00 100.00 100.00 95.45 100.00 100.00 95.00 96.55 97.30 92.73 100.00 97.14 94.12 95.00 100.00 96.88 97.06 90.00 97.73 97.14 93.55 97.73 98.15 97.30 96.88 92.00 92.31 96.97 97.67 98.53 98.08 95.83 96.00 96.97 96.97 98.57 97.37 97.73 100.00 97.30 93.75 100.00 97.50 96.77 96.88 97.50 97.87 99.13 K intron_retention Hydr1 chr2R + chr2R_5020273_5021103 chr2R_5020272_5020273;chr2R_5021103_5021104 chr2R_5020204_5020272;chr2R_5021104_5021275 21.82 19.05 11.11 33.33 15.79 12.50 22.22 21.43 14.58 NA 50.00 48.15 11.11 25.00 30.00 19.23 16.67 31.25 20.00 17.02 26.67 NA 12.50 12.00 NA 26.67 22.22 NA 30.77 14.29 11.76 NA 25.00 13.79 14.29 35.71 11.11 30.77 22.22 26.32 NA 15.62 26.67 12.50 33.33 16.67 NA NA 22.22 NA 26.32 26.32 NA 15.38 29.17 NA NA NA K intron_retention E(var)3-9 chr3R - chr3R_4818350_4818398 chr3R_4818349_4818350;chr3R_4818398_4818399 chr3R_4817512_4818349;chr3R_4818399_4818650 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 2.27 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.94 8.47 3.85 0.00 0.00 7.69 8.70 0.00 0.00 0.00 0.00 0.00 4.88 0.00 0.00 0.00 2.63 0.00 4.26 7.14 5.56 5.88 0.00 3.85 3.45 6.67 0.00 2.50 3.70 10.64 10.53 0.00 3.85 0.00 8.33 0.00 0.00 K intron_retention EF_chr2R_8548702_8595112,CG8768 chr2R - chr2R_8579528_8579585 chr2R_8579527_8579528;chr2R_8579585_8579586 chr2R_8579297_8579527;chr2R_8579586_8580028 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 4.55 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention noncoding_21631,CG9904 chrX + chrX_2512193_2512439 chrX_2512192_2512193;chrX_2512439_2512440 chrX_2512029_2512192;chrX_2512440_2512543 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.99 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD RpS15Aa chrX - chrX_13231573_13231643;chrX_13231573_13231635 chrX_13231573_13231639 chrX_13231538_13231572;chrX_13231644_13231706 65.84 NA 65.00 45.83 NA 50.00 77.78 70.00 70.37 NA 44.00 70.73 NA 70.00 56.25 58.33 NA 75.00 71.43 74.07 NA NA NA NA NA 70.00 NA NA NA NA 52.94 NA NA 54.35 NA NA NA NA NA NA NA 52.38 54.55 NA NA NA NA NA 71.88 NA NA 80.95 NA NA 64.71 NA 66.67 62.50 N intron_retention noncoding_7217 chr2R + chr2R_12100101_12100210 chr2R_12100100_12100101;chr2R_12100210_12100211 chr2R_12099944_12100100;chr2R_12100211_12104108 70.85 100.00 100.00 100.00 100.00 100.00 100.00 100.00 74.36 NA 46.15 72.00 100.00 100.00 60.87 100.00 100.00 47.37 61.90 100.00 40.00 NA 45.45 NA NA 68.42 NA NA NA NA 47.62 NA NA 68.97 100.00 NA NA 40.00 43.75 50.00 NA 64.86 100.00 35.29 NA NA NA 100.00 69.70 NA 39.13 NA NA NA 57.14 NA NA NA K jcn_only_AA CG10353,I_chrX_11775936_11778830,RI_chrX_11780885_11780988 chrX - chrX_11779138_11780988;chrX_11780885_11780988 chrX_11779315_11780988 chrX_11780989_11781085;chrX_11778831_11779137 2.27 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor cul-2,I_chr2L_21659273_21659499,I_chr2L_21659273_21659705,I_chr2L_21659761_21659839,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21659273_21659839 chr2L_21659273_21659705 chr2L_21659173_21659272;chr2L_21659840_21659939 1.61 0.00 1.41 4.13 0.00 1.45 3.17 6.06 2.58 1.52 0.00 1.32 4.84 1.82 3.19 4.76 1.75 1.67 2.78 1.34 1.52 1.38 1.69 1.61 2.80 1.19 3.48 6.08 2.60 2.17 3.80 2.78 2.22 3.54 1.39 0.95 0.83 1.60 1.61 3.60 1.43 2.13 0.00 1.60 0.00 1.64 0.00 0.00 1.54 0.00 2.88 3.41 0.00 0.00 2.47 0.00 1.19 0.00 K alternative_acceptor CG32313,REI_chr3L_1545423_1545473,I_chr3L_1545606_1545652 chr3L - chr3L_1545100_1545169 chr3L_1545104_1545169 chr3L_1545170_1545405;chr3L_1544988_1545099 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG8908,I_chr2R_16158045_16158109 chr2R + chr2R_16157528_16158109 chr2R_16158045_16158109 chr2R_16158110_16158209;chr2R_16156652_16157527 11.52 NA 10.00 NA NA NA 7.41 NA 38.46 NA NA 28.00 3.57 30.00 30.43 3.85 NA 7.41 NA 19.35 NA 6.90 5.00 NA NA NA NA NA NA NA 10.53 NA 4.76 30.00 NA NA NA NA 12.50 14.29 NA 14.29 NA NA 6.25 21.62 NA 0.00 21.88 4.00 NA NA NA NA 30.43 NA NA NA N intron_retention CG17018,R_chr2L_22312023_22363414 chr2L + chr2L_22363262_22363429 chr2L_22363261_22363262;chr2L_22363429_22363430 chr2L_22363200_22363261;chr2L_22363430_22363514 20.00 NA NA NA NA NA 53.33 26.32 41.18 NA NA NA NA NA NA 26.09 NA 0.00 18.75 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 31.58 NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA 19.05 NA NA NA NA NA 20.00 NA NA NA K intron_retention I_chr2L_11009331_11009442,dUTPase,I_chr2L_11011380_11011453 chr2L + chr2L_11011419_11011471 chr2L_11011418_11011419;chr2L_11011471_11011472 chr2L_11011335_11011418;chr2L_11011472_11011553 99.15 99.37 99.28 99.08 96.95 99.12 99.36 98.22 97.96 99.11 100.00 99.18 99.15 99.17 98.04 99.49 99.07 99.12 100.00 98.67 96.75 99.02 99.49 100.00 100.00 100.00 99.07 99.14 100.00 98.80 99.07 98.75 100.00 99.42 98.95 100.00 99.54 99.38 99.52 97.92 100.00 98.14 99.15 100.00 98.85 99.31 99.39 98.25 99.63 98.62 99.47 99.16 96.43 98.03 97.39 99.42 98.45 100.00 K intron_retention CG32442,Mkrn1 chr3L - chr3L_21522186_21522245 chr3L_21522185_21522186;chr3L_21522245_21522246 chr3L_21522066_21522185;chr3L_21522246_21522378 0.00 NA NA 0.00 NA NA 12.50 0.00 0.00 NA NA 0.00 NA NA NA 14.29 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA NA 0.00 K alternative_donor CG7510,I_chr3L_17622707_17622884 chr3L + chr3L_17621448_17621526 chr3L_17621472_17621526 chr3L_17621527_17621595;chr3L_17621379_17621447 45.16 40.43 41.67 30.51 52.38 54.84 43.75 46.46 48.25 45.45 45.00 45.74 54.72 49.12 47.62 48.72 48.89 44.62 48.28 40.31 43.10 53.45 40.00 52.38 39.39 40.74 41.86 48.15 25.71 29.63 42.37 32.00 29.63 41.24 60.00 32.35 40.82 45.16 48.84 41.27 36.96 45.26 48.72 56.60 28.57 48.72 54.55 20.00 43.02 43.75 51.11 54.84 52.63 44.44 42.03 50.00 54.55 45.16 K cassette Nedd4,I_chr3L_17534504_17535990,I_chr3L_17535485_17536604,I_chr3L_17536813_17536863 chr3L + chr3L_17535485_17536604 chr3L_17535485_17535689;chr3L_17535913_17536604 chr3L_17535690_17535912 chr3L_17535417_17535484;chr3L_17536605_17536704 74.37 80.00 NA NA NA NA 80.00 NA 85.71 66.67 80.00 91.67 NA NA NA NA NA NA NA 100.00 NA 52.00 63.64 80.00 80.00 NA 57.14 NA 63.64 72.73 NA 57.14 81.25 NA 66.67 NA 91.67 87.50 88.89 61.90 62.50 71.43 NA 53.33 71.43 70.00 NA 76.00 NA 57.14 60.00 NA 80.00 NA NA 100.00 NA 80.00 K alternative_acceptor CG6750,I_chr2L_10732122_10732185 chr2L - chr2L_10732122_10732185 chr2L_10732126_10732185 chr2L_10732186_10732285;chr2L_10732022_10732121 98.95 97.87 98.67 99.04 98.04 100.00 100.00 98.81 99.16 91.67 98.18 100.00 97.62 100.00 100.00 100.00 100.00 98.41 98.31 99.43 98.21 98.08 99.18 99.07 98.28 100.00 99.08 97.47 100.00 100.00 94.12 98.78 98.95 98.77 98.28 98.78 98.98 98.91 100.00 99.22 100.00 97.54 98.11 98.78 98.97 99.29 99.10 98.78 100.00 98.95 97.94 100.00 97.24 97.98 100.00 99.09 98.60 98.41 K intron_retention prel chr2R + chr2R_5311772_5311836 chr2R_5311771_5311772;chr2R_5311836_5311837 chr2R_5311616_5311771;chr2R_5311837_5311930 22.22 23.53 19.64 32.86 28.12 24.56 30.99 24.39 24.24 21.21 32.43 21.05 28.95 19.23 27.54 18.57 33.33 19.61 23.21 24.56 26.53 8.33 21.43 18.75 52.38 41.82 45.16 35.71 29.51 16.95 18.64 13.43 13.08 22.50 29.55 59.42 25.00 20.83 22.41 14.85 43.06 20.65 26.19 18.64 8.70 22.45 15.52 16.04 20.43 22.22 21.43 33.33 19.51 19.61 12.70 20.75 16.67 15.13 K jcn_only_AD CG3632,RI_chrX_16195880_16196242 chrX + chrX_16190917_16191693;chrX_16190941_16191693 chrX_16190824_16191693 chrX_16191694_16191751;chrX_16190763_16190823 45.83 NA NA 53.33 NA 39.13 37.93 60.61 52.50 NA NA 47.73 NA NA 64.00 63.89 NA NA 43.48 41.03 NA NA 51.72 31.82 NA 36.36 NA NA NA NA 45.83 NA NA 41.03 28.57 NA 60.87 NA NA 20.00 NA 46.94 NA NA NA NA NA NA 52.63 NA 32.00 42.86 NA NA 52.17 NA NA NA K intron_retention CG32138 chr3L + chr3L_14061847_14061907 chr3L_14061846_14061847;chr3L_14061907_14061908 chr3L_14061292_14061846;chr3L_14061908_14062027 0.00 0.00 0.66 0.00 0.00 0.00 1.55 0.64 0.93 0.00 0.57 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 1.08 0.00 0.00 0.31 0.00 0.00 0.00 0.00 4.39 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.44 0.68 0.00 K jcn_only_AA vap,RI_chrX_15897976_15899352,I_chrX_15897976_15899654,I_chrX_15898011_15899654,I_chrX_15898427_15899017,RI_chrX_15898427_15899654,RI_chrX_15899237_15899352,I_chrX_15899237_15899654 chrX - chrX_15897976_15899654;chrX_15898427_15899654;chrX_15899510_15899654;chrX_15898478_15899654 chrX_15898011_15899654 chrX_15899655_15899705 5.21 NA NA NA NA NA 5.88 NA 0.00 NA NA 6.06 NA NA NA 5.88 NA NA NA 2.13 NA 0.00 0.00 NA 9.09 NA NA NA NA 5.00 10.34 NA NA 7.14 NA NA 5.00 NA 4.55 6.45 NA 5.41 NA 4.35 NA NA NA NA 14.29 NA NA 3.85 NA NA NA NA NA NA K intron_retention CG17224,RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605 chr2L - chr2L_3018082_3018163 chr2L_3018081_3018082;chr2L_3018163_3018164 chr2L_3018075_3018081;chr2L_3018164_3018185 3.03 NA NA 10.00 NA NA 4.00 3.12 2.70 NA NA 16.67 NA 12.50 NA 2.78 14.29 NA 6.67 6.25 NA 0.00 NA NA NA NA NA NA NA NA 2.94 6.25 NA 0.00 NA NA NA NA NA 0.00 0.00 10.00 NA 0.00 0.00 0.00 NA 0.00 6.25 14.29 NA NA NA NA NA NA NA 0.00 K intron_retention CG42640,l(2)k09913 chr2R + chr2R_18953339_18953402 chr2R_18953338_18953339;chr2R_18953402_18953403 chr2R_18952146_18953338;chr2R_18953403_18953498 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,EF_chr2R_15349994_15351814,F_chr2R_15349994_15351846,noncoding_8037,I_chr2R_15350149_15350210,FI_chr2R_15350149_15351814,I_chr2R_15350437_15351814,I_chr2R_15350437_15351825,I_chr2R_15350905_15351814,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15350285_15351846;chr2R_15350149_15351846;chr2R_15350437_15351846 chr2R_15350157_15351846 chr2R_15351847_15351914;chr2R_15350068_15350148 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K alternative_last_exon olf186-F,CG30323 chr2R + chr2R_13738966_13746762;chr2R_13738966_13745146 chr2R_13738966_13742644 chr2R_13746763_13748712;chr2R_13745147_13745302 chr2R_13742645_13743293 chr2R_13738563_13738965 12.73 9.86 17.14 21.31 6.38 22.22 20.45 20.90 15.32 9.09 20.00 19.75 21.43 30.00 16.67 30.43 14.29 20.93 25.00 22.64 23.08 5.05 12.73 9.68 11.76 17.02 11.94 10.26 8.33 9.09 19.51 7.69 9.38 19.40 13.21 13.89 6.30 7.79 9.28 7.59 10.34 17.00 18.42 8.96 5.80 9.38 8.33 11.32 18.81 8.11 17.07 17.95 12.73 6.25 18.37 8.96 8.62 8.70 K intron_retention Pop2,RI_chr3L_11992097_11993849 chr3L - chr3L_11993791_11993849 chr3L_11993790_11993791;chr3L_11993849_11993850 chr3L_11993373_11993790;chr3L_11993850_11993949 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.58 2.63 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Rab30,I_chr2L_7032178_7032236 chr2L - chr2L_7032178_7032244;chr2L_7032178_7032236;chr2L_7032178_7032310 chr2L_7032178_7032321 chr2L_7032078_7032177;chr2L_7032322_7032336 34.62 26.67 31.43 38.89 NA 11.43 40.48 45.00 34.62 40.00 50.00 39.22 47.62 NA 25.93 19.44 20.00 39.13 15.15 28.30 22.22 17.24 33.33 31.03 27.27 42.86 41.38 57.14 38.64 38.24 21.74 30.77 24.39 44.74 NA 39.29 38.24 20.00 40.00 32.20 35.90 28.85 29.17 37.14 34.09 44.90 54.55 31.25 33.33 33.33 35.29 NA NA 47.62 35.48 52.38 NA 33.33 K alternative_donor dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21308996_21310000;chr2L_21308996_21309994 chr2L_21308996_21309579 chr2L_21308992_21308995;chr2L_21310001_21310009 83.33 65.22 76.19 74.19 87.50 76.47 79.31 80.77 72.88 NA 90.00 65.22 80.00 73.68 76.92 76.67 80.00 88.46 73.91 80.65 89.47 86.96 96.00 90.00 83.33 82.35 96.15 NA NA 95.00 79.17 90.00 85.42 63.64 92.86 96.77 85.29 90.48 96.43 NA 92.31 70.21 64.71 92.00 83.33 100.00 81.82 92.31 75.00 NA 88.89 78.95 87.50 100.00 80.00 85.71 86.67 83.33 K jcn_only_AD RI_chr4_1144958_1145393,CG11155,I_chr4_1152220_1152710,I_chr4_1152585_1152687 chr4 + chr4_1147564_1147627 chr4_1147568_1147627 chr4_1147628_1147833;chr4_1147545_1147563 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 96.00 NA 96.43 NA 100.00 NA NA NA 95.24 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 95.45 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K alternative_donor CG6695 chr3R + chr3R_20483336_20484042;chr3R_20483332_20484042 chr3R_20483291_20484042 chr3R_20484043_20484133;chr3R_20483238_20483290 5.26 4.17 5.88 3.70 6.25 0.00 5.00 0.00 7.32 0.00 0.00 3.45 7.69 0.00 0.00 6.67 7.69 5.56 0.00 2.56 0.00 7.69 8.57 12.50 14.29 7.69 0.00 9.52 0.00 5.26 22.22 16.67 14.63 8.00 5.00 4.76 9.76 9.09 11.43 2.78 3.03 7.32 0.00 15.15 3.12 8.82 9.52 0.00 0.00 5.71 3.85 4.76 10.34 13.33 5.26 12.50 3.23 3.33 K intron_retention lolal,I_chr2R_14043671_14043736,I_chr2R_14043671_14043740,I_chr2R_14043671_14043901,RI_chr2R_14043671_14044082,I_chr2R_14043671_14044191,I_chr2R_14043671_14044461,I_chr2R_14043671_14045289,I_chr2R_14043671_14045344 chr2R - chr2R_14043671_14044191 chr2R_14043670_14043671;chr2R_14044191_14044192 chr2R_14043571_14043670;chr2R_14044192_14044203 100.00 NA NA 100.00 NA 100.00 NA 90.91 100.00 NA NA 100.00 NA 90.91 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA NA NA 100.00 100.00 NA NA 100.00 93.75 NA 100.00 NA NA NA 92.31 NA 94.44 NA NA NA 90.00 NA 100.00 93.33 87.50 100.00 NA NA NA 90.91 100.00 NA NA K intron_retention MCPH1,RI_chr2R_7790917_7791377 chr2R - chr2R_7785983_7786051 chr2R_7785982_7785983;chr2R_7786051_7786052 chr2R_7784614_7785982;chr2R_7786052_7786143 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 3.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.53 0.00 K jcn_only_AD fs(1)h,I_chrX_7950171_7952371,I_chrX_7954192_7955240 chrX - chrX_7944590_7945403 chrX_7944590_7945391 chrX_7944470_7944589;chrX_7945404_7945562 35.24 35.24 35.64 31.06 41.24 32.00 31.58 39.31 30.74 43.40 35.71 38.42 24.04 39.64 39.25 34.68 42.68 39.81 35.35 35.58 32.56 10.00 43.24 37.14 26.87 32.74 37.21 38.57 41.27 25.71 30.00 39.47 32.20 37.41 38.00 31.31 30.22 32.43 35.54 39.72 32.00 37.99 33.65 32.67 23.08 37.18 31.17 25.00 42.49 31.34 40.31 50.00 32.31 31.91 35.04 25.81 20.93 37.04 K alternative_donor CalpA chr2R + chr2R_15312652_15313538 chr2R_15312744_15313538 chr2R_15313539_15313723;chr2R_15312580_15312651 94.00 96.43 83.33 80.00 87.88 83.78 87.30 86.67 89.29 100.00 83.33 87.50 79.41 87.50 83.02 88.46 83.33 89.19 81.08 81.25 83.72 94.44 100.00 100.00 96.97 84.09 100.00 100.00 98.41 94.00 83.61 96.67 92.47 85.25 100.00 100.00 95.45 96.00 97.44 100.00 96.97 87.50 86.21 94.44 94.44 98.08 100.00 92.31 90.00 100.00 97.56 100.00 96.15 100.00 87.50 96.00 96.77 92.31 K multi_cassette DCAP,E_chr2R_6159586_6174578,I_chr2R_6164310_6172914,I_chr2R_6172307_6179999,I_chr2R_6178643_6181126,RI_chr2R_6183553_6192101,I_chr2R_6188094_6192101 chr2R + chr2R_6172307_6182116 chr2R_6172307_6181126;chr2R_6181267_6181365;chr2R_6181439_6182116 chr2R_6181127_6181266;chr2R_6181366_6181438 chr2R_6172207_6172306;chr2R_6182117_6182270 83.33 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 83.33 NA 57.14 NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA K intron_retention CG14778,pck,CG14780 chrX + chrX_1365097_1365172 chrX_1365096_1365097;chrX_1365172_1365173 chrX_1364901_1365096;chrX_1365173_1365381 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 NA 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 6.45 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CaMKII,I_chr4_1059085_1060638,I_chr4_1059085_1065781,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,RI_chr4_1071489_1071968,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1059064_1060638;chr4_1059061_1060638 chr4_1059085_1060638 chr4_1060639_1060704;chr4_1059054_1059060 0.00 NA NA 0.00 NA NA 0.00 0.00 4.35 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K alternative_donor vig chr2L - chr2L_15067690_15067915;chr2L_15067690_15067952;chr2L_15067690_15067995;chr2L_15067690_15067868;chr2L_15067690_15068029 chr2L_15067690_15067999 chr2L_15066937_15067689;chr2L_15068030_15068031 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention noncoding_8304 chr2R - chr2R_17031266_17031413 chr2R_17031265_17031266;chr2R_17031413_17031414 chr2R_17031068_17031265;chr2R_17031414_17031612 100.00 99.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.84 100.00 100.00 99.88 99.88 99.91 100.00 100.00 100.00 100.00 100.00 100.00 99.93 100.00 100.00 100.00 100.00 99.91 99.92 99.94 99.89 99.93 99.91 100.00 100.00 100.00 100.00 99.89 99.86 99.90 100.00 99.93 99.94 99.86 100.00 99.68 99.84 100.00 99.95 99.94 100.00 100.00 100.00 99.82 100.00 99.91 99.87 99.90 99.82 K intron_retention Nrx-IV,eap chr3L + chr3L_12142009_12144310 chr3L_12142008_12142009;chr3L_12144310_12144311 chr3L_12141892_12142008;chr3L_12144311_12144507 20.34 NA NA 75.00 NA 18.75 NA 26.67 20.69 50.00 NA 16.67 NA 16.67 33.33 35.71 NA NA NA 11.54 NA 22.73 22.58 11.76 NA NA 14.29 NA NA 30.00 3.70 NA 21.43 25.00 NA 11.11 10.34 NA NA 18.52 NA 29.41 NA 7.69 NA NA NA 27.78 27.27 NA 20.00 7.69 NA NA 14.29 NA NA NA K intron_retention CG42542,I_chr3R_11024452_11024586 chr3R + chr3R_11025433_11026407 chr3R_11025432_11025433;chr3R_11026407_11026408 chr3R_11025292_11025432;chr3R_11026408_11026470 19.79 NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG30492,C_chr2R_3522706_3523025,RI_chr2R_3536203_3536977,I_chr2R_3543397_3543455 chr2R + chr2R_3516481_3517681 chr2R_3516618_3517681 chr2R_3517682_3517750;chr2R_3516480_3516480 100.00 NA 100.00 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA 100.00 K alternative_donor CG42507,Trl,EI_chr3L_14750431_14750893,I_chr3L_14750431_14750985,CI_chr3L_14750431_14753667,I_chr3L_14754175_14754238 chr3L - chr3L_14750431_14750941;chr3L_14750431_14750762;chr3L_14750431_14751007;chr3L_14750431_14750893 chr3L_14750431_14750583 chr3L_14750331_14750430;chr3L_14751008_14751008 17.65 13.33 16.67 9.68 5.00 13.33 22.73 25.64 19.15 18.18 11.76 13.64 20.00 27.78 16.00 14.63 15.79 11.11 23.81 13.64 7.14 25.00 17.39 18.18 15.38 23.81 17.65 42.86 23.08 20.00 9.52 25.00 23.81 18.42 17.65 26.32 6.25 14.29 7.14 19.05 25.00 14.63 28.57 25.00 23.81 25.71 15.38 26.32 17.02 15.79 17.86 15.79 11.76 14.29 14.81 22.22 13.33 24.39 K jcn_only_AD Spp,Ets21C,rempA chr2L - chr2L_543350_543426 chr2L_543350_543415 chr2L_543282_543349;chr2L_543427_543492 100.00 100.00 100.00 99.58 99.23 100.00 99.42 99.43 100.00 100.00 99.37 100.00 100.00 100.00 99.42 100.00 100.00 100.00 100.00 100.00 99.35 99.54 100.00 100.00 100.00 100.00 99.61 100.00 99.42 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.27 99.69 99.42 100.00 100.00 100.00 100.00 98.55 99.47 100.00 97.78 98.88 99.68 100.00 100.00 100.00 99.63 100.00 100.00 99.47 98.92 K alternative_last_exon Dyb,I_chr2R_8337305_8339173,I_chr2R_8337742_8339173,I_chr2R_8338101_8339173,I_chr2R_8348603_8351844 chr2R + chr2R_8337742_8339479 chr2R_8337742_8338025 chr2R_8339480_8341559 chr2R_8338026_8338100 chr2R_8337642_8337741 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG15134 chr2L + chr2L_16904132_16904236 chr2L_16904144_16904236 chr2L_16904237_16904401;chr2L_16902932_16904131 13.04 14.29 9.09 16.28 13.04 14.29 11.63 18.60 19.44 14.29 19.05 13.21 14.29 14.29 8.00 20.00 10.71 4.35 8.00 16.00 5.88 13.64 10.81 12.00 13.04 12.00 10.71 6.67 14.29 13.04 8.33 NA 16.67 13.64 16.67 15.00 28.57 NA 10.53 8.82 NA 16.67 8.00 15.38 NA NA 7.69 9.52 15.69 NA 7.69 NA NA NA 11.43 NA NA NA K intron_retention CG5080,I_chr2L_1162147_1163759,I_chr2L_1163280_1163759,I_chr2L_1163629_1163759,I_chr2L_1163632_1163759 chr2L - chr2L_1163150_1163759 chr2L_1163149_1163150;chr2L_1163759_1163760 chr2L_1163000_1163149;chr2L_1163760_1163859 0.00 0.00 0.00 3.92 3.23 2.44 4.44 0.00 1.67 12.50 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 6.67 1.35 0.00 0.00 2.56 0.00 0.00 0.00 2.78 3.85 0.00 0.00 0.00 14.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 NA 3.70 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 5.00 K alternative_acceptor Lsd-1,CG10375 chr3R + chr3R_19590407_19590470 chr3R_19590407_19590449 chr3R_19590108_19590406;chr3R_19590471_19590681 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD ctp,I_chrX_4582351_4582483,I_chrX_4582382_4585669,I_chrX_4582627_4585669,RI_chrX_4582706_4585629,RI_chrX_4582706_4592329 chrX + chrX_4582706_4585669;chrX_4582325_4585669 chrX_4582351_4585669 chrX_4585670_4585729;chrX_4582282_4582324 98.98 99.15 98.51 99.19 98.43 98.01 98.06 98.11 98.95 98.39 98.46 99.37 97.21 98.85 99.55 99.26 99.54 98.71 98.85 99.56 98.92 99.45 99.03 99.59 98.59 99.72 98.85 95.63 99.69 98.50 99.39 98.98 98.94 98.98 98.58 99.67 99.22 99.06 99.34 98.95 99.15 98.83 98.18 99.35 97.95 99.44 98.73 99.19 98.23 99.29 99.31 99.23 98.97 99.31 99.02 98.40 99.30 98.05 K jcn_only_AA CG31156,EFI_chr3R_18436373_18436443 chr3R - chr3R_18435204_18436443 chr3R_18436373_18436443 chr3R_18436444_18436543 11.21 9.52 0.00 0.00 NA NA NA 13.79 15.91 NA NA 14.29 NA NA 6.90 4.35 NA NA 30.00 48.48 NA NA 8.00 4.55 NA 9.52 9.09 NA NA NA 48.15 NA NA 22.73 NA NA NA NA 4.17 16.67 NA 13.33 NA NA NA NA 12.90 NA 15.00 14.29 8.70 NA NA NA NA 4.35 4.00 18.18 K alternative_acceptor Dip-B chr3R + chr3R_9608174_9608429 chr3R_9608174_9608416 chr3R_9608012_9608173;chr3R_9608430_9608563 5.88 6.52 7.22 4.72 4.55 6.10 9.38 6.87 5.43 5.56 7.25 4.73 6.12 1.49 5.94 5.88 8.89 5.48 6.25 5.85 6.56 4.35 6.98 5.26 6.82 6.25 10.81 11.94 5.63 3.45 4.48 8.33 3.57 5.65 3.64 6.78 4.17 7.55 6.78 4.67 7.89 5.03 6.15 4.44 4.88 6.67 6.10 6.12 5.00 7.81 2.67 5.26 6.90 5.17 7.14 3.70 5.21 4.69 K alternative_acceptor Psn,RI_chr3L_20430213_20430358 chr3L + chr3L_20425808_20425896 chr3L_20425808_20425866 chr3L_20425774_20425807;chr3L_20425897_20426106 94.74 96.61 80.43 84.72 88.89 83.72 94.83 93.22 93.90 89.47 94.12 90.00 87.88 94.74 90.91 97.44 88.89 88.24 96.97 95.18 87.50 98.65 92.31 96.88 96.00 86.96 92.06 92.59 98.18 93.33 97.37 89.47 96.00 94.20 96.43 94.87 95.70 95.74 96.88 98.67 100.00 92.63 86.21 100.00 97.56 95.65 91.67 100.00 96.92 90.57 95.24 96.97 96.97 92.59 90.57 91.30 96.72 96.77 K intron_retention Cirl,R_chr2R_4502755_4503407 chr2R + chr2R_4503509_4503574 chr2R_4503508_4503509;chr2R_4503574_4503575 chr2R_4503408_4503508;chr2R_4503575_4503583 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 95.83 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA NA K alternative_donor CEI_chr3R_10927927_10937314,CG6934 chr3R - chr3R_10937912_10957329;chr3R_10937912_10957457 chr3R_10937912_10957499 chr3R_10937315_10937911;chr3R_10957500_10957513 0.00 0.00 2.50 0.00 0.00 0.00 3.70 2.08 0.00 0.00 0.00 1.47 6.25 0.00 3.23 0.00 0.00 2.04 4.00 1.61 0.00 2.86 0.00 0.00 0.00 0.00 0.00 3.45 1.79 1.96 0.00 5.88 0.00 0.00 0.00 2.78 0.00 3.57 2.22 1.82 0.00 0.00 0.00 1.85 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 12.50 2.70 K jcn_only_AD blw,I_chr2R_18686935_18687400,I_chr2R_18687257_18687400 chr2R + chr2R_18686775_18687400 chr2R_18687257_18687400 chr2R_18687401_18687500;chr2R_18686499_18686774 0.00 0.31 0.00 0.46 0.00 0.00 0.28 0.00 0.14 0.00 0.00 0.00 0.41 0.31 0.00 0.25 0.00 1.26 0.00 0.21 0.59 0.34 0.16 0.00 0.00 0.00 0.20 0.00 0.00 0.22 0.23 0.17 0.00 0.00 0.00 0.00 0.13 0.20 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 N alternative_donor CG3191,CG3091,I_chrX_2147635_2147990 chrX - chrX_2145388_2146756 chrX_2145388_2145704 chrX_2145228_2145387;chrX_2146757_2146893 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 65.52 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD I_chr2L_13965397_13965694,nimB3,RI_chr2L_13967695_13967746 chr2L - chr2L_13967695_13967750 chr2L_13967695_13967746 chr2L_13967595_13967694;chr2L_13967751_13967841 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 2.19 0.00 0.00 1.22 0.00 0.00 0.00 0.60 0.00 0.00 1.35 0.40 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 1.96 0.00 0.00 0.00 2.33 0.00 0.00 0.47 K alternative_acceptor CG8080,RI_chr2R_4978542_4978911,REI_chr2R_4978545_4978911,REI_chr2R_4979159_4979234,I_chr2R_4979276_4979936 chr2R - chr2R_4978557_4978911;chr2R_4978542_4978911 chr2R_4978545_4978911 chr2R_4978912_4979011;chr2R_4978445_4978541 22.22 8.33 25.00 27.27 30.77 30.00 36.36 17.65 15.38 25.00 28.57 9.09 12.50 23.08 20.00 16.67 16.67 23.08 27.27 36.36 15.38 0.00 25.00 22.22 35.71 14.29 30.77 25.00 18.18 21.43 21.43 11.11 21.43 23.81 18.18 0.00 21.74 27.27 9.09 25.71 15.38 25.00 15.38 15.38 21.05 25.93 30.00 27.27 20.00 41.67 19.05 20.00 22.22 17.65 26.67 23.53 27.27 24.00 K cassette Dyrk3,I_chr4_1231226_1233305,I_chr4_1232931_1232996,I_chr4_1233845_1234170 chr4 - chr4_1231226_1233305 chr4_1231226_1232378;chr4_1233242_1233305 chr4_1232379_1233241 chr4_1231145_1231225;chr4_1233306_1233405 100.00 100.00 100.00 98.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG42231,chif,CaBP1 chr2L - chr2L_16343305_16351926 chr2L_16343304_16343305;chr2L_16351926_16351927 chr2L_16342822_16343304;chr2L_16351927_16352093 0.00 NA NA 0.00 NA NA 2.44 0.00 6.25 NA NA 0.00 NA 0.00 NA NA NA NA NA 10.00 NA 0.00 NA 7.14 NA 0.00 0.00 NA NA NA 5.00 NA 6.67 11.76 0.00 NA 14.29 NA NA 10.00 NA 0.00 NA NA 0.00 12.50 13.33 NA 8.33 0.00 0.00 NA NA NA NA NA 0.00 NA N intron_retention Not1,I_chr2R_5463624_5463682 chr2R - chr2R_5455592_5455673 chr2R_5455591_5455592;chr2R_5455673_5455674 chr2R_5455002_5455591;chr2R_5455674_5455880 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 78.12 100.00 100.00 100.00 100.00 NA 100.00 76.00 72.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA NA 100.00 100.00 100.00 NA K intron_retention rod,CG1635,I_chr3R_27416864_27416939 chr3R + chr3R_27413659_27413718 chr3R_27413658_27413659;chr3R_27413718_27413719 chr3R_27413427_27413658;chr3R_27413719_27413823 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.08 0.00 NA 0.00 6.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 5.00 0.00 0.00 4.35 0.00 0.00 NA 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 NA K intron_retention kermit,I_chr2R_4035901_4043493 chr2R - chr2R_4035901_4043918 chr2R_4035900_4035901;chr2R_4043918_4043919 chr2R_4035801_4035900;chr2R_4043919_4044128 61.36 65.52 57.14 52.50 54.17 57.14 69.05 45.00 70.27 44.00 58.33 63.64 50.00 67.65 61.36 53.70 52.94 66.67 68.97 49.43 84.62 53.57 51.06 65.00 64.00 73.08 63.16 85.71 51.61 65.38 57.58 45.45 55.26 61.40 61.76 76.92 65.22 67.86 58.97 56.52 46.15 63.49 69.57 55.56 65.22 55.56 64.29 45.71 64.71 57.14 64.58 52.00 63.64 47.83 67.57 52.63 68.97 50.00 K alternative_donor ctp,I_chrX_4582351_4582483,I_chrX_4582382_4585669,I_chrX_4582627_4585669,RI_chrX_4582706_4585629,RI_chrX_4582706_4592329 chrX + chrX_4582706_4585669;chrX_4582325_4585669 chrX_4582351_4585669 chrX_4585670_4585729;chrX_4582282_4582324 98.40 98.34 97.78 98.11 98.82 98.03 97.50 97.20 98.53 98.86 98.65 98.58 97.79 98.46 98.97 98.12 98.48 98.24 97.48 99.24 98.68 100.00 98.59 98.25 97.17 98.08 98.04 96.30 98.40 98.57 98.35 99.12 98.85 98.58 96.83 99.08 98.43 100.00 98.21 97.93 97.78 98.38 97.59 98.60 96.85 97.96 99.38 97.46 98.15 99.03 98.49 98.64 99.02 99.02 98.53 98.34 99.03 97.06 K alternative_acceptor Tao-1,I_chrX_19470426_19470727 chrX - chrX_19470426_19470727 chrX_19470429_19470727 chrX_19470728_19470827;chrX_19470326_19470425 98.00 96.55 98.41 94.74 97.78 100.00 97.01 98.51 98.17 98.11 97.44 98.84 97.83 97.30 98.08 96.88 100.00 98.18 97.92 98.04 98.00 99.10 98.11 98.73 97.62 96.36 97.59 100.00 100.00 98.48 100.00 96.30 98.25 100.00 98.00 98.15 97.58 96.43 97.09 98.97 96.30 100.00 100.00 95.71 97.06 97.96 97.62 98.44 98.92 100.00 96.67 96.00 97.06 97.14 98.31 100.00 97.22 97.50 K intron_retention CG12162,I_chr3R_1293876_1293924,I_chr3R_1294319_1294410 chr3R + chr3R_1293872_1293924 chr3R_1293871_1293872;chr3R_1293924_1293925 chr3R_1293776_1293871;chr3R_1293925_1294024 0.00 5.66 12.50 15.38 0.00 0.00 0.00 6.52 0.00 0.00 0.00 1.59 NA 0.00 0.00 0.00 0.00 0.00 0.00 6.94 0.00 17.95 2.67 2.38 0.00 0.00 8.06 3.92 6.90 0.00 0.00 0.00 5.49 0.00 0.00 10.77 3.61 0.00 3.61 2.86 7.55 5.48 NA 0.00 0.00 4.00 0.00 4.48 3.33 5.36 0.00 6.06 0.00 1.64 0.00 6.06 0.00 1.39 K intron_retention CG1116 chr3R + chr3R_1047048_1047113 chr3R_1047047_1047048;chr3R_1047113_1047114 chr3R_1046471_1047047;chr3R_1047114_1047195 71.43 75.00 NA 76.47 NA NA 68.75 75.00 81.82 NA NA 58.82 NA NA 72.73 71.43 NA NA 75.00 73.33 NA NA NA 72.73 NA 60.00 NA NA NA NA 63.64 NA NA 55.56 NA NA NA NA NA 75.00 54.55 69.23 87.50 NA NA 41.67 NA 46.67 80.00 58.82 NA NA NA NA 63.64 NA 54.55 73.33 K alternative_donor CDase chr3R + chr3R_26286617_26288536;chr3R_26286611_26288536;chr3R_26286613_26288536;chr3R_26286631_26288536 chr3R_26286512_26288536 chr3R_26288537_26288691;chr3R_26286221_26286511 77.27 NA NA 75.00 NA NA NA NA 71.43 100.00 NA 81.82 NA NA 88.89 NA NA NA NA NA NA NA 61.54 69.23 80.00 NA 57.14 NA 77.78 NA NA NA 63.64 77.78 50.00 77.27 NA NA 77.78 85.71 NA NA NA 77.78 NA 71.43 NA 75.00 81.82 76.92 77.78 90.00 69.23 81.82 NA 75.00 NA 70.00 K alternative_donor Vps20 chr2R + chr2R_18496124_18496188 chr2R_18496135_18496188 chr2R_18496189_18496298;chr2R_18496038_18496123 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.25 0.00 1.33 0.41 0.53 0.67 0.00 1.41 0.00 4.11 0.00 2.22 0.00 0.00 0.72 0.00 0.66 1.17 0.00 1.02 0.00 1.09 0.41 0.00 0.72 0.59 0.47 0.79 0.00 1.04 0.49 0.47 0.00 0.00 0.00 2.27 0.40 0.72 0.79 K jcn_only_AD CG8468 chr2R + chr2R_10107548_10114915 chr2R_10108271_10114915 chr2R_10114916_10116800;chr2R_10107405_10107547 100.00 100.00 100.00 98.69 100.00 99.68 100.00 100.00 99.84 100.00 100.00 100.00 100.00 99.24 99.72 99.73 100.00 99.01 100.00 100.00 100.00 99.68 100.00 99.80 99.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.74 99.76 100.00 99.84 100.00 99.81 99.59 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention dod chrX + chrX_21216980_21217348 chrX_21216979_21216980;chrX_21217348_21217349 chrX_21216647_21216979;chrX_21217349_21217891 0.00 0.00 0.00 0.99 1.45 0.00 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.54 1.20 0.00 0.00 0.80 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Ranbp16,I_chrX_15826655_15827277 chrX - chrX_15822964_15823373 chrX_15822964_15823205;chrX_15823300_15823373 chrX_15823206_15823299 chrX_15822907_15822963;chrX_15823374_15823435 4.26 NA 4.55 0.00 NA 6.67 5.56 2.86 2.70 NA 4.55 0.00 5.56 0.00 3.85 0.00 NA 3.23 4.76 3.12 3.45 14.29 7.14 4.76 NA 5.26 2.94 NA 0.00 NA 9.09 7.69 NA 7.14 4.35 7.69 7.14 5.56 6.25 2.94 NA 0.00 NA 3.70 5.00 0.00 4.17 5.56 2.94 6.67 3.85 NA 5.26 8.00 0.00 3.85 0.00 3.23 K intron_retention spz chr3R - chr3R_22892203_22892329 chr3R_22892202_22892203;chr3R_22892329_22892330 chr3R_22892041_22892202;chr3R_22892330_22892387 6.03 5.71 7.57 4.34 6.03 5.32 3.77 6.14 6.09 3.45 5.05 7.76 10.90 6.42 7.62 6.85 5.33 7.25 10.00 6.34 6.60 2.70 4.87 5.45 5.03 4.14 11.24 7.78 4.02 4.84 4.94 6.73 5.56 6.15 4.07 7.19 4.90 8.98 5.46 7.21 6.20 5.30 4.70 4.28 3.81 6.08 6.06 6.60 5.42 7.39 8.04 5.84 3.48 7.69 7.37 3.86 4.48 6.67 K intron_retention slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,I_chr2R_20289332_20290093 chr2R - chr2R_20286707_20287722 chr2R_20286706_20286707;chr2R_20287722_20287723 chr2R_20286631_20286706;chr2R_20287723_20287822 0.00 0.00 0.00 1.32 0.00 0.00 0.00 1.10 0.00 0.00 0.00 1.63 1.27 0.00 0.86 1.57 0.00 0.00 0.00 1.13 0.00 0.60 0.65 0.00 0.00 0.00 0.00 2.60 6.15 1.64 0.00 2.82 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.90 0.00 0.00 0.00 2.44 0.00 1.93 0.46 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17018,R_chr2L_22312023_22363414 chr2L + chr2L_22358907_22363429 chr2L_22358906_22358907;chr2L_22363429_22363430 chr2L_22358859_22358906;chr2L_22363430_22363514 30.70 33.33 24.14 60.00 41.67 23.08 28.57 37.14 35.71 NA NA 43.75 40.91 32.00 36.36 35.00 40.00 58.33 34.62 46.67 40.00 NA 20.00 NA NA 47.06 NA NA NA 25.00 29.17 NA 25.00 34.04 0.00 NA NA NA NA 13.79 NA 23.68 29.41 23.81 NA NA NA 12.00 28.57 NA 23.53 NA NA NA 29.03 NA NA 9.09 K jcn_only_AD Cdk4,RI_chr2R_12471503_12471656 chr2R + chr2R_12467202_12468346;chr2R_12467432_12468346;chr2R_12467241_12468346;chr2R_12467275_12468346;chr2R_12467225_12468346;chr2R_12467227_12468346;chr2R_12467261_12468346;chr2R_12467039_12468346 chr2R_12467474_12468346 chr2R_12468347_12468520;chr2R_12467030_12467038 3.78 3.70 2.63 4.44 NA 12.00 9.68 0.00 3.85 NA 3.33 8.33 2.63 3.23 0.00 1.92 3.85 9.09 4.76 4.85 8.33 6.45 0.00 0.00 NA 4.55 0.00 NA NA NA 3.23 NA 5.00 1.69 NA 8.70 0.00 NA NA 5.00 NA 0.00 NA NA 0.00 3.33 NA NA 4.35 6.90 3.85 4.76 NA NA 0.00 0.00 0.00 6.45 K intron_retention REI_chr3L_3042451_3043440,Jafrac2,I_chr3L_3042851_3043044,I_chr3L_3043202_3043271 chr3L + chr3L_3042773_3043044 chr3L_3042772_3042773;chr3L_3043044_3043045 chr3L_3042751_3042772;chr3L_3043045_3043144 8.34 NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG6701,RI_chr2R_9866896_9867532 chr2R - chr2R_9862880_9862938 chr2R_9862879_9862880;chr2R_9862938_9862939 chr2R_9862774_9862879;chr2R_9862939_9864809 0.00 0.00 0.00 1.38 0.00 0.00 1.35 0.00 0.68 1.82 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 1.52 0.65 0.00 0.00 1.39 3.31 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 K alternative_acceptor mfas,I_chr3R_7811954_7812017,I_chr3R_7818597_7818853,I_chr3R_7818607_7818853,RI_chr3R_7818607_7818970 chr3R - chr3R_7818597_7818853;chr3R_7818607_7818853 chr3R_7818575_7818853 chr3R_7818854_7818892;chr3R_7818507_7818574 22.50 28.12 33.33 28.95 21.88 35.48 17.39 32.35 22.35 11.76 22.50 19.18 15.22 23.08 21.43 31.37 26.67 20.83 33.33 24.00 27.27 6.67 21.88 17.39 25.00 24.14 12.50 19.35 11.76 34.62 27.27 21.43 54.84 29.41 21.05 20.83 4.55 3.70 11.54 15.56 30.77 25.68 22.50 13.79 17.65 29.27 17.39 38.89 25.61 21.21 26.67 8.33 28.57 44.44 19.51 21.43 31.25 48.57 K intron_retention CG42516,Obp44a chr2R - chr2R_4018678_4018760 chr2R_4018677_4018678;chr2R_4018760_4018761 chr2R_4016859_4018677;chr2R_4018761_4018808 74.53 64.29 80.00 75.00 81.82 70.00 58.06 77.42 62.86 NA 58.82 72.00 80.00 75.00 72.22 83.87 58.82 50.00 50.00 65.85 46.15 68.75 100.00 90.00 NA 73.33 93.75 NA NA 87.50 74.07 69.23 60.00 75.86 NA NA 88.89 NA 69.23 85.71 90.00 64.29 64.29 100.00 81.82 69.23 66.67 81.25 75.00 NA 100.00 NA 90.00 88.89 73.08 72.73 77.78 88.89 K alternative_donor CG31431 chr3R + chr3R_17696656_17697703;chr3R_17696730_17697703;chr3R_17696702_17697703 chr3R_17696581_17697703 chr3R_17697704_17697862;chr3R_17696406_17696580 5.13 5.13 8.18 7.41 6.15 4.65 5.39 7.37 5.41 9.09 6.82 5.62 3.06 6.86 4.88 7.79 4.94 10.34 6.78 6.83 1.20 3.77 12.05 8.00 0.00 2.94 4.49 4.35 5.45 7.41 6.73 1.61 5.06 3.75 7.55 2.27 5.36 6.06 6.94 8.16 4.94 3.21 4.65 2.30 1.54 4.17 6.35 0.76 3.45 9.43 6.86 5.00 0.00 2.50 4.69 5.88 4.62 0.00 K intron_retention eIF-1A chr3R + chr3R_14100703_14100758 chr3R_14100702_14100703;chr3R_14100758_14100759 chr3R_14100638_14100702;chr3R_14100759_14100863 100.00 100.00 100.00 100.00 100.00 99.78 99.87 100.00 99.81 99.62 100.00 100.00 100.00 99.76 99.83 100.00 100.00 99.78 100.00 99.79 99.77 100.00 99.52 100.00 99.69 100.00 99.82 99.63 100.00 100.00 100.00 100.00 100.00 99.87 99.65 100.00 99.78 99.65 99.83 99.78 100.00 99.78 99.76 100.00 100.00 99.78 100.00 100.00 100.00 100.00 100.00 99.55 99.71 100.00 100.00 99.75 99.77 100.00 K cassette spz chr3R - chr3R_22892607_22894865;chr3R_22892388_22894865;chr3R_22892388_22893079 chr3R_22892607_22892843,chr3R_22892388_22892843;chr3R_22892922_22893079,chr3R_22892922_22894865 chr3R_22892844_22892921 chr3R_22892330_22892387;chr3R_22894866_22895053 44.31 41.41 58.86 35.10 38.82 44.31 26.42 50.46 44.21 30.53 64.00 43.82 63.35 44.79 42.13 54.37 51.85 51.03 48.68 59.53 54.81 34.53 35.68 36.96 40.56 47.33 48.00 36.47 23.60 43.54 48.24 44.38 48.00 51.03 52.32 53.85 36.15 32.00 40.18 47.96 50.45 43.28 44.85 35.78 28.05 46.73 41.94 42.90 46.24 44.44 49.23 39.86 27.60 40.52 47.91 40.61 34.91 46.55 K jcn_only_AD vir-1,I_chr2L_12404178_12407208,RE_chr2L_12409622_12421640,noncoding_2764,I_chr2L_12421830_12423260 chr2L - chr2L_12421830_12423322;chr2L_12421830_12423260;chr2L_12421830_12423333 chr2L_12421830_12423278 chr2L_12421816_12421829;chr2L_12423334_12423360 0.65 0.64 2.07 0.79 0.75 1.77 0.84 1.69 0.82 0.39 0.90 0.61 0.55 1.18 1.81 0.43 2.36 1.91 1.83 0.61 3.63 0.71 0.71 0.17 0.89 1.78 0.00 0.33 1.45 0.27 0.87 0.50 1.51 2.07 0.77 0.54 0.43 0.00 0.00 0.00 0.00 0.80 1.33 0.22 1.83 0.65 0.14 0.26 1.03 0.47 0.16 0.14 0.21 0.25 1.32 0.41 0.20 0.57 K alternative_donor RhoGAPp190,I_chrX_17544272_17544863,I_chrX_17546225_17546531 chrX - chrX_17544272_17546531;chrX_17544272_17546123 chrX_17544272_17546421 chrX_17544172_17544271;chrX_17546532_17546535 6.06 0.00 0.00 4.00 0.00 10.34 9.09 6.67 1.33 10.53 0.00 6.45 10.34 3.85 2.63 6.25 4.17 3.70 0.00 11.48 0.00 7.14 13.64 0.00 0.00 9.38 7.14 0.00 0.00 8.33 5.88 25.00 7.69 5.77 6.25 6.25 13.64 8.33 0.00 2.22 0.00 4.92 4.00 0.00 11.11 0.00 25.00 7.14 3.64 25.00 12.50 20.00 0.00 0.00 8.57 14.29 NA 10.53 K alternative_acceptor RnrS,I_chr2R_7872603_7872720 chr2R - chr2R_7872573_7872720 chr2R_7872603_7872720 chr2R_7872721_7872820;chr2R_7872503_7872572 1.27 0.53 1.11 1.73 0.00 0.59 3.02 0.56 0.90 1.68 1.54 1.88 1.84 0.69 1.00 0.72 1.05 1.96 1.71 1.25 0.66 2.44 1.60 1.40 1.59 1.13 2.58 2.63 1.41 0.93 1.20 2.70 0.00 0.55 1.72 0.00 1.27 0.99 1.27 2.91 1.64 0.87 1.31 2.19 0.00 0.00 1.85 0.00 0.87 1.72 1.09 1.94 0.85 1.38 0.43 1.40 1.72 0.00 N alternative_donor CG32594 chrX + chrX_14927033_14927638;chrX_14927381_14927638;chrX_14926607_14927638 chrX_14927496_14927638 chrX_14927639_14928125;chrX_14925576_14926606 1.00 1.05 1.13 1.06 0.00 0.62 1.66 1.49 1.33 0.93 0.76 0.77 1.82 2.04 1.12 2.72 0.76 0.78 1.54 0.59 0.72 5.05 0.96 1.00 1.77 0.00 1.60 1.94 0.66 0.93 0.63 1.36 0.48 1.25 1.55 0.00 0.38 0.55 0.42 0.76 0.66 1.15 0.85 1.11 0.00 0.39 1.05 0.61 1.65 1.38 0.92 2.11 0.74 1.24 0.53 1.23 1.21 1.12 K alternative_acceptor DnaJ-H,EI_chr2L_13164741_13164824,Sfmbt chr2L - chr2L_13164741_13164824 chr2L_13164763_13164824 chr2L_13164825_13164923;chr2L_13164641_13164740 85.71 NA NA 100.00 NA NA 91.67 90.00 76.92 NA NA 77.78 NA NA NA 80.00 NA NA NA 92.86 NA 90.00 92.31 NA NA NA 90.00 NA NA 77.78 71.43 NA 75.00 81.82 85.71 NA 100.00 NA NA 90.91 75.00 93.33 NA 88.89 NA 71.43 NA 88.89 87.50 77.78 75.00 77.78 NA 70.00 77.78 85.71 NA 100.00 K intron_retention CG17765,I_chr2R_6368423_6368594 chr2R + chr2R_6368048_6368594 chr2R_6368047_6368048;chr2R_6368594_6368595 chr2R_6367828_6368047;chr2R_6368595_6368674 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.19 1.00 0.00 0.33 0.00 1.01 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.32 0.00 0.00 0.00 0.42 0.00 0.54 0.00 0.41 0.00 0.00 0.52 0.00 0.36 0.47 0.64 0.54 0.00 0.40 0.00 0.19 0.00 0.36 0.44 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8979 chr2R - chr2R_7855985_7856051 chr2R_7855984_7855985;chr2R_7856051_7856052 chr2R_7855789_7855984;chr2R_7856052_7856064 63.12 NA NA 56.25 NA NA 70.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Abl,I_chr3L_16622304_16639909,RI_chr3L_16652567_16654512 chr3L - chr3L_16620293_16620601 chr3L_16620292_16620293;chr3L_16620601_16620602 chr3L_16620022_16620292;chr3L_16620602_16621188 10.94 7.69 10.39 9.17 6.25 8.70 20.69 8.91 7.74 13.64 9.38 11.11 3.64 8.93 9.78 12.28 3.33 8.96 10.91 5.81 10.94 30.06 9.65 16.00 21.43 9.23 15.49 12.12 19.72 11.00 12.00 13.16 10.66 8.87 12.00 17.50 11.97 13.25 14.93 14.42 12.07 9.41 10.91 12.07 10.67 16.00 15.38 13.95 12.14 12.28 10.59 17.31 12.00 5.26 9.80 8.47 0.00 4.55 K jcn_only_AA I_chr2L_13965397_13965694,nimB3,RI_chr2L_13967695_13967746 chr2L - chr2L_13967668_13967750 chr2L_13967695_13967750 chr2L_13967751_13967841;chr2L_13967595_13967667 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.62 100.00 100.00 99.39 99.12 99.40 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor MB8.chr3R.pasa.66,CG1105,I_chr3R_2892020_2892122,RI_chr3R_2892020_2892252,I_chr3R_2892305_2892645 chr3R - chr3R_2892020_2892122;chr3R_2892020_2892252 chr3R_2892020_2892645 chr3R_2891920_2892019;chr3R_2892646_2892745 95.56 97.06 96.30 100.00 100.00 94.12 93.88 95.00 94.03 100.00 95.83 92.73 86.21 93.75 95.56 89.47 92.31 96.43 96.43 96.30 95.65 97.73 96.23 95.83 92.59 100.00 94.59 96.30 94.29 96.88 90.00 96.55 100.00 93.33 93.94 94.59 97.73 95.35 97.37 90.74 93.94 95.71 92.31 97.30 96.43 95.56 95.83 94.29 93.75 93.75 95.00 85.71 100.00 95.83 95.35 94.44 97.87 93.02 K intron_retention CG11299,noncoding_8970,I_chr2R_19616762_19618431,I_chr2R_19619053_19619186 chr2R + chr2R_19616758_19618431 chr2R_19616757_19616758;chr2R_19618431_19618432 chr2R_19616662_19616757;chr2R_19618432_19618531 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 3.28 NA 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 1.35 0.00 6.67 0.00 0.00 0.00 4.17 0.00 NA NA 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7546 chr3L + chr3L_7508878_7508967 chr3L_7508877_7508878;chr3L_7508967_7508968 chr3L_7508741_7508877;chr3L_7508968_7509150 9.28 9.43 5.71 9.38 0.00 0.00 8.33 11.43 3.23 8.82 3.70 8.47 7.69 14.29 7.69 8.00 9.38 0.00 12.00 6.73 4.00 16.67 10.57 9.59 11.63 0.00 10.61 8.89 8.51 20.00 9.09 6.67 14.63 5.26 11.36 11.11 6.31 11.84 11.54 10.61 8.82 6.90 0.00 7.25 10.81 11.54 12.16 7.69 9.80 11.48 9.28 9.09 11.54 10.71 6.45 11.54 10.26 14.81 K jcn_only_AA CG9293,RI_chr2L_13386386_13386487,I_chr2L_13394941_13395015 chr2L - chr2L_13386688_13386756 chr2L_13386691_13386756 chr2L_13386757_13386818;chr2L_13386624_13386687 100.00 98.11 100.00 100.00 98.04 100.00 100.00 100.00 97.30 100.00 100.00 98.57 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 98.48 100.00 98.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.15 100.00 100.00 100.00 98.89 100.00 100.00 98.21 97.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Fmr1,I_chr3R_5930712_5930781,I_chr3R_5934794_5935245,I_chr3R_5934801_5935537 chr3R - chr3R_5930733_5930790 chr3R_5930733_5930781 chr3R_5930601_5930732;chr3R_5930791_5930881 14.24 11.85 9.92 13.98 17.54 17.78 15.25 14.96 12.33 14.71 12.21 12.26 13.43 13.78 10.33 13.09 13.79 12.79 19.62 14.40 15.29 18.75 18.86 17.77 11.11 12.05 12.06 13.57 24.24 13.07 13.67 19.49 19.10 12.24 16.97 8.07 20.63 15.87 14.24 16.63 10.24 16.57 7.47 15.35 16.48 22.22 18.82 14.68 11.94 12.88 16.85 13.10 14.53 13.92 13.64 14.29 17.69 13.78 K intron_retention CG31158,I_chr3R_18427389_18429185,CG31159 chr3R + chr3R_18427389_18428566 chr3R_18427388_18427389;chr3R_18428566_18428567 chr3R_18427289_18427388;chr3R_18428567_18428783 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 4.55 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 3.12 0.00 2.27 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 2.56 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG15097,I_chr2R_14712075_14712152,I_chr2R_14713403_14713523 chr2R - chr2R_14713186_14713523 chr2R_14713185_14713186;chr2R_14713523_14713524 chr2R_14713002_14713185;chr2R_14713524_14713623 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA 0.00 NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA K intron_retention Vinc,I_chrX_2114558_2116113 chrX - chrX_2109687_2109745 chrX_2109686_2109687;chrX_2109745_2109746 chrX_2109288_2109686;chrX_2109746_2109876 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette lig,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3960284_3961104;chr2R_3960284_3960871 chr2R_3960284_3960631;chr2R_3960740_3961104,chr2R_3960740_3960871 chr2R_3960632_3960739 chr2R_3959868_3960283;chr2R_3961105_3961205 98.82 98.82 98.97 99.75 98.87 98.57 96.86 99.72 97.97 94.91 97.79 100.00 99.52 99.55 98.70 99.67 98.10 99.58 100.00 98.99 98.08 98.56 98.83 97.98 97.49 96.55 98.86 99.57 98.94 99.11 96.67 98.39 97.74 99.01 99.65 98.90 98.31 99.73 99.00 98.17 95.64 97.80 99.05 98.92 95.89 97.18 98.75 97.62 98.12 99.08 99.12 99.13 97.95 97.79 98.96 97.63 98.33 98.92 K intron_retention bun,I_chr2L_12520177_12536274,I_chr2L_12537393_12537634,RI_chr2L_12540901_12546409 chr2L - chr2L_12539487_12540515 chr2L_12539486_12539487;chr2L_12540515_12540516 chr2L_12537746_12539486;chr2L_12540516_12540692 100.00 97.50 100.00 100.00 100.00 98.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 98.21 100.00 97.62 100.00 100.00 99.12 97.37 97.96 98.53 100.00 100.00 100.00 98.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.37 98.77 97.10 100.00 98.02 100.00 100.00 100.00 95.83 96.97 100.00 97.62 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG17528,RI_chr2R_706735_711409,I_chr2R_706735_711443,I_chr2R_707374_711443 chr2R - chr2R_707442_711409;chr2R_707442_711615 chr2R_707442_711443 chr2R_706793_707441;chr2R_711616_711627 44.44 40.00 20.00 33.33 50.00 40.00 58.82 50.00 20.00 NA NA 25.00 50.00 37.50 NA 23.53 44.44 NA 45.45 50.00 NA NA 30.00 NA 50.00 50.00 25.00 NA NA NA 14.29 NA NA 47.06 20.00 NA NA NA 25.00 50.00 NA 54.55 20.00 60.00 NA NA NA 50.00 55.00 NA 42.86 NA NA NA 44.44 NA NA NA K intron_retention l(3)82Fd,I_chr3R_1125296_1161435,I_chr3R_1125296_1175189,I_chr3R_1129905_1148709,I_chr3R_1129905_1160126,I_chr3R_1131576_1133656,I_chr3R_1131693_1133665,I_chr3R_1147660_1148709 chr3R - chr3R_1131576_1133665 chr3R_1131575_1131576;chr3R_1133665_1133666 chr3R_1131476_1131575;chr3R_1133666_1133756 32.05 25.00 23.53 41.67 NA NA 41.67 35.29 37.04 NA NA 33.33 33.33 30.77 21.05 33.33 NA 30.77 52.63 35.29 NA NA NA NA NA 45.45 NA NA NA NA 26.67 NA NA 26.09 NA NA NA NA NA 38.46 NA 29.63 20.00 NA NA NA NA 66.67 20.00 NA 21.43 NA NA NA 29.41 NA NA NA K intron_retention su(f),I_chrXHet_77570_78035 chrXHet + chrXHet_79621_79677 chrXHet_79620_79621;chrXHet_79677_79678 chrXHet_79320_79620;chrXHet_79678_80006 1.54 0.78 1.11 6.06 0.00 3.39 0.00 1.83 3.31 3.85 1.27 2.50 1.64 1.54 2.25 4.44 0.00 0.00 0.00 1.86 0.00 1.59 0.75 1.60 4.62 0.00 6.19 10.14 11.86 0.00 0.00 0.00 2.25 2.52 2.35 5.62 1.28 0.00 0.00 0.62 0.00 1.21 0.00 1.61 0.00 1.96 1.97 0.00 2.04 2.58 1.40 0.00 3.88 0.00 0.98 3.62 4.74 1.18 K jcn_only_AD shi,RI_chrX_15786633_15786860,RE_chrX_15793108_15795563 chrX + chrX_15786474_15786860;chrX_15786603_15786860;chrX_15786285_15786860;chrX_15786200_15786860;chrX_15786394_15786860 chrX_15786615_15786860 chrX_15786861_15786960;chrX_15786192_15786199 0.00 0.00 0.00 1.72 0.00 0.00 0.00 1.30 0.00 NA 0.00 1.85 0.00 0.00 0.00 1.45 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 10.71 0.00 NA NA 0.00 0.00 NA 0.00 1.14 0.00 0.00 0.00 4.35 NA 0.00 0.00 0.00 2.78 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K intron_retention Tequila chr3L + chr3L_9084726_9084836 chr3L_9084725_9084726;chr3L_9084836_9084837 chr3L_9084633_9084725;chr3L_9084837_9084920 12.50 10.26 15.15 9.76 17.31 12.50 12.50 10.19 9.30 13.79 41.67 11.43 2.74 12.12 8.86 11.46 10.34 10.61 12.66 8.29 8.70 29.17 7.45 14.10 13.16 7.69 14.10 15.38 7.32 21.28 30.65 7.69 12.50 20.00 19.05 7.84 10.84 31.25 12.50 13.98 6.25 10.94 11.54 5.88 9.21 6.47 13.46 12.24 13.93 14.29 12.12 17.14 13.16 18.18 16.67 15.66 28.30 12.90 K alternative_acceptor Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045251_16046104;chr3L_16045251_16046108;chr3L_16045251_16045854;chr3L_16045251_16046111 chr3L_16045251_16046129 chr3L_16045216_16045250;chr3L_16046130_16046204 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD CG31216 chr3R + chr3R_15522379_15523033 chr3R_15522974_15523033 chr3R_15523034_15523168;chr3R_15522274_15522378 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,RI_chr3R_27801288_27801517,I_chr3R_27801288_27801596 chr3R - chr3R_27795508_27805244 chr3R_27795508_27798223;chr3R_27798276_27801169;chr3R_27801288_27801517;chr3R_27801688_27805244 chr3R_27798224_27798275;chr3R_27801170_27801287;chr3R_27801518_27801687 chr3R_27795478_27795507;chr3R_27805245_27805341 42.86 60.00 42.86 66.67 22.22 66.67 NA 38.46 41.67 33.33 100.00 64.29 42.86 75.00 42.86 55.56 NA 60.00 42.86 55.56 100.00 NA NA 12.50 NA 42.86 40.00 NA 14.29 NA 50.00 NA NA 60.00 NA NA NA NA 50.00 37.50 NA 41.67 40.00 NA NA 40.00 NA 50.00 42.86 12.50 37.50 33.33 NA NA 50.00 NA NA 66.67 K jcn_only_AA TepIV,EI_chr2L_19548696_19549582 chr2L + chr2L_19553916_19553969;chr2L_19553916_19553978 chr2L_19553916_19553975 chr2L_19553362_19553915;chr2L_19553979_19556092 95.15 94.22 90.50 94.59 99.36 95.42 94.07 96.26 92.40 93.75 94.69 95.95 95.15 96.34 93.63 96.68 93.33 95.57 95.45 93.88 92.90 95.20 97.36 93.44 97.69 92.68 96.98 93.60 96.14 95.77 95.32 93.72 95.89 95.02 95.39 92.89 92.93 97.96 96.20 94.09 95.25 95.34 95.86 95.09 94.62 95.34 95.51 94.60 94.68 95.52 94.83 93.41 96.18 94.12 95.43 93.17 97.09 94.74 K jcn_only_AA CG6656,RI_chr3R_17701533_17702073,CG33092 chr3R + chr3R_17701533_17702073 chr3R_17701533_17702069 chr3R_17701437_17701532;chr3R_17702074_17702162 98.82 100.00 100.00 100.00 100.00 97.22 100.00 100.00 99.44 97.56 97.56 99.24 100.00 98.41 98.84 100.00 100.00 98.85 98.57 99.53 98.28 98.96 97.39 100.00 97.56 100.00 100.00 98.31 93.94 100.00 97.70 98.18 98.92 98.17 100.00 NA 99.43 97.96 97.28 98.80 96.88 99.41 100.00 94.87 95.38 100.00 98.99 98.21 100.00 97.62 100.00 97.87 96.91 98.36 97.83 98.31 98.79 98.48 K alternative_donor ALiX,I_chr3R_23531574_23532266 chr3R - chr3R_23522554_23522613 chr3R_23522554_23522610 chr3R_23522185_23522553;chr3R_23522614_23522796 100.00 99.31 100.00 100.00 100.00 98.18 100.00 98.61 99.56 98.97 100.00 99.18 100.00 100.00 98.21 97.44 98.28 98.57 100.00 99.40 100.00 99.43 100.00 98.79 100.00 100.00 98.56 100.00 99.28 100.00 100.00 98.63 100.00 98.78 100.00 100.00 100.00 99.33 99.10 100.00 100.00 99.34 100.00 100.00 100.00 100.00 100.00 98.63 100.00 99.49 99.26 100.00 100.00 99.36 98.11 98.31 99.06 100.00 K intron_retention Ac3,I_chr2L_21635211_21637957,I_chr2L_21643253_21646594 chr2L + chr2L_21637787_21637957 chr2L_21637786_21637787;chr2L_21637957_21637958 chr2L_21637745_21637786;chr2L_21637958_21638057 7.14 6.67 0.00 0.00 NA NA 12.50 0.00 12.50 0.00 NA 9.52 NA 11.76 5.56 0.00 0.00 NA 16.67 8.82 NA 41.67 8.70 17.39 0.00 5.88 13.79 NA NA 16.67 1.85 7.14 0.00 0.00 0.00 15.00 3.45 9.52 15.62 0.00 NA 12.00 NA 26.32 6.67 NA 16.67 NA 3.85 9.68 6.45 15.38 0.00 14.29 0.00 14.29 NA NA K alternative_donor CG10194,RI_chr2L_19489213_19489295 chr2L - chr2L_19489213_19489299 chr2L_19489213_19489295 chr2L_19489113_19489212;chr2L_19489300_19489395 6.67 NA NA 9.52 NA NA 0.00 NA 13.33 NA 6.67 0.00 NA NA 7.69 7.14 NA NA NA 21.05 NA 8.33 5.26 0.00 NA 5.56 4.76 NA NA NA 18.75 NA NA 6.67 NA NA 0.00 7.69 6.25 5.88 NA 6.25 NA 10.00 NA 0.00 6.25 NA 4.17 5.26 14.29 NA NA 6.67 NA 6.67 14.29 NA K alternative_donor CG42507,Trl,EI_chr3L_14750431_14750893,I_chr3L_14750431_14750985,CI_chr3L_14750431_14753667,I_chr3L_14754175_14754238 chr3L - chr3L_14750431_14750941;chr3L_14750431_14751007;chr3L_14750431_14750893;chr3L_14750431_14750583 chr3L_14750431_14750762 chr3L_14750331_14750430;chr3L_14751008_14751008 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3L_3151185_3151263,CG32280,CG32278 chr3L + chr3L_3171107_3171163 chr3L_3171106_3171107;chr3L_3171163_3171164 chr3L_3170945_3171106;chr3L_3171164_3171919 0.00 1.85 0.00 18.18 0.00 4.44 5.08 1.89 2.23 0.00 0.00 0.00 0.00 0.00 0.00 1.98 0.00 0.00 1.56 0.72 0.00 3.03 1.23 0.00 0.00 0.00 3.92 0.00 2.90 0.00 1.52 2.61 1.72 1.98 0.00 NA 0.00 0.00 0.00 0.00 0.00 1.61 1.72 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 2.67 0.00 0.00 0.00 K cassette pgant5,I_chr2L_5079575_5093241 chr2L - chr2L_5079575_5093444 chr2L_5079575_5092874;chr2L_5092902_5093444 chr2L_5092875_5092901 chr2L_5079475_5079574;chr2L_5093445_5093575 30.77 36.36 20.00 29.41 NA 25.00 26.32 30.00 32.43 NA NA 38.10 33.33 22.22 23.08 37.14 20.00 NA 38.10 34.78 20.00 NA 26.67 40.00 NA NA 45.45 NA NA NA 25.00 NA NA 23.08 NA NA 27.27 NA NA 41.67 NA 40.00 40.00 30.77 NA NA NA NA 45.45 NA 30.77 NA NA NA 30.77 NA NA NA K intron_retention Or43b,Kdm4A chr2R - chr2R_3808978_3809272 chr2R_3808977_3808978;chr2R_3809272_3809273 chr2R_3808620_3808977;chr2R_3809273_3810210 70.30 NA 73.33 85.71 NA NA 64.29 78.95 66.67 NA NA 66.67 NA 77.78 NA 74.19 88.89 NA 75.00 70.59 NA 50.00 NA NA NA 63.64 41.67 NA NA NA 70.00 NA NA 66.67 NA NA NA NA NA 80.00 NA 81.82 NA NA NA 69.23 NA 91.67 66.67 NA 50.00 NA NA NA 83.33 64.29 53.85 85.71 K intron_retention CG6218,RI_chr3R_11168116_11168762,I_chr3R_11171570_11171630 chr3R - chr3R_11168116_11168689 chr3R_11168115_11168116;chr3R_11168689_11168690 chr3R_11168016_11168115;chr3R_11168690_11168799 12.50 NA NA 25.00 NA NA NA 12.50 6.67 NA NA 21.43 NA NA 6.25 30.77 33.33 NA NA 25.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 12.50 NA NA NA NA NA NA NA 21.74 NA NA NA NA NA NA 12.50 NA NA NA NA NA 6.67 NA NA NA K alternative_donor alpha-Man-I,I_chrX_10218352_10219759,I_chrX_10218390_10219759 chrX - chrX_10218352_10219816;chrX_10218352_10219918;chrX_10218352_10219759;chrX_10218352_10219665;chrX_10218352_10219823;chrX_10218352_10219708 chrX_10218352_10219846 chrX_10218290_10218351;chrX_10219919_10219979 14.29 14.29 16.67 7.69 16.67 11.11 10.00 17.65 15.79 50.00 0.00 20.00 NA 11.11 12.50 19.05 16.67 16.67 12.50 7.14 16.67 11.11 12.50 14.29 14.29 14.29 12.50 NA NA 11.11 28.57 NA 14.29 8.33 NA 16.67 0.00 14.29 NA 12.50 33.33 30.77 12.50 33.33 NA 20.00 NA 0.00 6.67 33.33 10.00 25.00 0.00 NA 22.22 0.00 0.00 33.33 K intron_retention CG30339,I_chr2R_5496948_5497550,F_chr2R_5549824_5554869 chr2R - chr2R_5488637_5488689 chr2R_5488636_5488637;chr2R_5488689_5488690 chr2R_5488007_5488636;chr2R_5488690_5489245 3.85 NA NA NA NA NA 4.76 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA 0.00 5.88 NA 14.29 NA NA NA NA NA 3.85 NA NA NA NA NA 0.00 NA NA NA NA 4.17 7.14 NA NA NA NA NA 5.26 NA 0.00 NA NA NA NA NA NA NA K alternative_donor Pi3K92E,I_chr3R_16459436_16459551,I_chr3R_16459436_16459848 chr3R - chr3R_16459436_16460267;chr3R_16459436_16460340;chr3R_16459436_16460287;chr3R_16459436_16459551 chr3R_16459436_16459848 chr3R_16459336_16459435;chr3R_16460341_16460435 3.57 0.00 5.26 5.26 0.00 0.00 3.70 9.38 7.14 0.00 8.33 0.00 5.26 3.57 4.55 2.70 5.88 7.14 4.76 6.67 7.69 0.00 3.03 0.00 0.00 5.88 5.26 7.69 12.50 0.00 8.00 0.00 14.29 6.67 0.00 4.55 0.00 0.00 0.00 8.11 0.00 3.12 6.67 3.57 0.00 0.00 0.00 0.00 3.12 0.00 4.76 0.00 0.00 0.00 4.17 8.33 9.09 0.00 K intron_retention CG4266,I_chr2R_17052549_17053657 chr2R - chr2R_17052549_17054234 chr2R_17052548_17052549;chr2R_17054234_17054235 chr2R_17052449_17052548;chr2R_17054235_17054339 0.00 NA 7.14 6.90 NA NA 6.25 9.09 4.35 NA NA 7.14 11.11 NA NA 4.76 NA NA 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 9.09 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 K intron_retention bl,I_chr2R_16481586_16483061 chr2R + chr2R_16483169_16483262 chr2R_16483168_16483169;chr2R_16483262_16483263 chr2R_16483062_16483168;chr2R_16483263_16483319 0.00 0.00 0.00 0.00 0.00 0.00 0.93 1.64 0.00 0.00 0.00 14.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD TBPH,I_chr2R_19748981_19749882,I_chr2R_19748981_19749921,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19748984_19749899;chr2R_19748984_19750012 chr2R_19748984_19749783 chr2R_19748884_19748983;chr2R_19750013_19750013 67.25 NA NA 65.38 NA 79.17 80.65 58.33 75.00 NA NA 60.61 NA NA NA 64.00 NA NA NA 65.52 65.00 NA NA NA NA NA NA NA NA NA 42.42 NA NA 68.97 NA NA NA NA NA 70.00 NA 70.27 NA NA NA NA NA NA 70.37 NA NA NA NA NA 77.78 NA NA 65.00 K intron_retention NFAT,RI_chrX_13543535_13546911,I_chrX_13544101_13544542 chrX + chrX_13550068_13554772 chrX_13550067_13550068;chrX_13554772_13554773 chrX_13549884_13550067;chrX_13554773_13556719 0.00 0.00 3.70 6.12 4.44 0.00 11.43 0.00 1.98 0.00 0.00 2.25 0.00 0.00 4.65 0.00 0.00 0.00 0.00 6.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.89 5.41 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.26 7.14 0.00 0.00 0.00 0.00 0.00 2.90 0.00 2.35 0.00 0.00 0.00 0.00 0.00 4.00 NA K intron_retention CG32479,CG34056,CG34057 chr3L + chr3L_873876_873990 chr3L_873875_873876;chr3L_873990_873991 chr3L_873308_873875;chr3L_873991_874881 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention ena chr2R + chr2R_15043420_15046238 chr2R_15043419_15043420;chr2R_15046238_15046239 chr2R_15043239_15043419;chr2R_15046239_15046560 0.00 0.00 0.00 1.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 1.59 2.94 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 1.22 NA 0.57 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 NA K alternative_donor CG4858,I_chr3L_20520381_20520577,EI_chr3L_20520642_20520692 chr3L + chr3L_20520377_20520692;chr3L_20520381_20520692 chr3L_20520642_20520692 chr3L_20520693_20520792;chr3L_20520281_20520376 4.00 2.63 2.50 5.41 3.12 3.85 4.69 9.30 5.97 4.00 3.12 7.94 4.00 6.45 2.94 4.76 3.85 7.69 3.12 1.37 3.85 12.12 3.70 5.36 5.41 5.41 5.97 7.27 1.12 2.17 2.44 3.64 3.77 5.26 3.23 6.45 5.97 7.89 6.06 7.79 1.43 5.00 5.88 3.39 2.94 6.02 3.77 2.99 6.00 9.09 4.76 7.14 2.33 4.00 3.12 5.08 2.83 3.57 K intron_retention rtet,RE_chr3R_16939259_16939667 chr3R + chr3R_16936280_16936337 chr3R_16936279_16936280;chr3R_16936337_16936338 chr3R_16935974_16936279;chr3R_16936338_16936556 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N cassette unc-13,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_902576_903586;chr4_899619_903586;chr4_897821_903586 chr4_897821_903242,chr4_902576_903242,chr4_899619_903242;chr4_903350_903586 chr4_903243_903349 chr4_897721_897820;chr4_903587_903686 57.45 55.56 80.95 31.34 45.00 65.22 53.49 44.29 57.14 46.15 85.71 41.07 62.50 62.50 51.72 65.79 65.00 73.33 55.17 64.58 66.67 65.38 53.49 51.72 39.02 58.14 45.90 50.00 60.00 42.86 60.00 71.43 56.00 55.77 50.00 22.00 50.00 75.00 66.67 71.43 39.13 51.11 52.38 57.45 66.67 58.33 62.50 60.00 46.00 81.25 46.88 58.82 85.71 87.50 64.00 56.25 53.33 70.59 K intron_retention Brca2 chr2R + chr2R_20414569_20414628 chr2R_20414568_20414569;chr2R_20414628_20414629 chr2R_20413676_20414568;chr2R_20414629_20414700 0.00 NA NA 9.52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA K alternative_donor Hsc70Cb chr3L + chr3L_14030513_14030577;chr3L_14030503_14030577 chr3L_14030522_14030577 chr3L_14030578_14030850;chr3L_14030355_14030502 50.00 NA NA 70.00 NA NA 38.46 44.44 43.75 NA NA 50.00 NA NA NA NA NA NA 62.50 50.00 NA NA NA NA NA NA NA NA 60.00 NA 55.56 NA NA 70.00 NA NA NA NA NA 50.00 NA 37.50 NA NA NA NA NA NA 50.00 NA NA NA NA NA 42.86 NA NA NA K intron_retention CG1514,Ykt6 chrX + chrX_7810928_7810987 chrX_7810927_7810928;chrX_7810987_7810988 chrX_7810244_7810927;chrX_7810988_7812532 0.00 0.00 0.00 1.41 0.00 0.00 0.00 2.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.12 0.00 0.00 0.00 0.00 1.89 0.00 1.33 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention tankyrase chr3R - chr3R_21483920_21486313 chr3R_21483919_21483920;chr3R_21486313_21486314 chr3R_21483137_21483919;chr3R_21486314_21487087 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 13.33 0.00 0.00 NA NA 0.00 5.26 NA 0.00 NA NA 0.00 0.00 0.00 0.00 2.70 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA K alternative_acceptor Rme-8 chr2R - chr2R_5063437_5063595 chr2R_5063440_5063595 chr2R_5063596_5063740;chr2R_5063238_5063436 40.91 39.13 50.00 38.33 48.15 46.67 40.82 34.85 38.67 33.33 48.15 43.55 39.29 47.22 48.65 34.78 37.14 38.89 35.71 40.68 42.31 34.62 48.00 38.46 39.39 37.84 37.50 42.86 35.71 33.33 33.33 NA 47.83 48.15 45.45 44.00 48.28 33.33 39.39 45.16 NA 44.44 36.67 42.11 NA 41.67 NA 46.67 53.03 36.36 42.86 40.91 54.55 NA 41.86 NA NA NA K alternative_donor scrib,I_chr3R_22362324_22363015,I_chr3R_22381374_22399575,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22362244_22363092;chr3R_22362120_22363092;chr3R_22362315_22363092;chr3R_22362254_22363092;chr3R_22362324_22363092;chr3R_22362142_22363092 chr3R_22362224_22363092 chr3R_22363093_22363115;chr3R_22362112_22362119 5.88 7.14 9.62 9.46 5.00 10.71 4.62 2.82 4.55 5.26 7.50 2.78 2.70 4.76 7.14 6.35 5.26 5.41 7.14 2.17 4.65 3.45 3.92 13.89 10.00 5.88 6.25 10.53 7.55 3.80 7.14 0.00 1.52 4.23 4.76 3.03 2.63 9.09 5.13 3.70 7.32 6.33 5.88 5.26 13.89 14.63 9.09 7.69 7.25 0.00 6.52 6.90 8.33 0.00 5.88 13.33 0.00 2.99 K alternative_donor Tsp42Ee,RI_chr2R_2904593_2904783 chr2R + chr2R_2900622_2904517 chr2R_2901155_2904517 chr2R_2904518_2904592;chr2R_2900538_2900621 0.34 0.33 0.21 0.17 0.50 0.31 0.47 0.24 0.38 0.32 0.61 0.37 0.42 0.50 0.29 0.23 0.36 0.33 0.31 0.21 0.34 0.56 0.47 0.37 0.37 0.35 0.59 1.51 0.68 0.65 0.19 0.16 0.11 0.28 0.49 0.60 0.59 0.37 0.24 0.46 0.17 0.29 0.40 0.48 0.34 0.23 0.26 0.65 0.28 0.27 0.36 0.45 0.10 0.11 0.20 0.22 0.23 0.18 K alternative_donor CG5903 chr3R - chr3R_11971429_11971499 chr3R_11971429_11971480 chr3R_11971276_11971428;chr3R_11971500_11972081 100.00 100.00 100.00 100.00 100.00 97.30 98.21 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 98.72 100.00 100.00 100.00 100.00 96.15 100.00 100.00 98.85 100.00 100.00 99.12 100.00 100.00 96.15 100.00 100.00 100.00 98.33 100.00 100.00 97.44 100.00 98.70 98.65 98.33 98.70 100.00 100.00 97.22 98.85 100.00 97.14 100.00 98.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor Cf2,I_chr2L_4882802_4882864 chr2L - chr2L_4882493_4882888 chr2L_4882493_4882864 chr2L_4882368_4882492;chr2L_4882889_4882964 29.03 NA NA NA NA NA NA 23.53 45.45 NA NA 38.46 NA NA NA NA NA NA NA 33.33 NA 27.27 31.25 NA NA NA 27.78 13.33 50.00 23.08 NA 45.45 30.00 25.00 NA 41.67 25.00 40.00 NA 26.47 26.67 60.00 NA 25.00 25.00 35.71 NA 29.03 18.18 NA 15.38 NA NA NA 30.00 NA NA 30.00 K alternative_donor CG9588,omd chr3R - chr3R_9501459_9501552 chr3R_9501459_9501522 chr3R_9500847_9501458;chr3R_9501553_9501849 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 97.37 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Gbeta13F,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15754284_15755409;chrX_15754356_15755409 chrX_15755345_15755409 chrX_15755410_15755509;chrX_15754256_15754283 5.48 3.60 3.67 2.05 9.89 5.32 10.48 4.67 7.05 8.16 7.25 10.99 13.68 6.35 7.14 0.94 5.05 1.30 3.03 5.48 1.41 18.00 4.93 11.76 4.88 2.44 2.59 9.80 1.61 5.41 4.76 10.20 9.23 7.41 4.44 1.67 4.94 6.10 2.67 13.18 8.62 5.21 11.71 5.48 8.82 13.13 4.71 12.50 6.00 4.26 7.20 9.02 0.00 4.17 5.34 2.60 5.56 8.82 K intron_retention CG42533,EI_chr2L_7473200_7473297,RI_chr2L_7473200_7473419,F_chr2L_7476906_7476978 chr2L - chr2L_7473200_7473419 chr2L_7473199_7473200;chr2L_7473419_7473420 chr2L_7473100_7473199;chr2L_7473420_7473519 45.24 45.45 53.85 63.64 72.73 59.09 56.25 65.79 45.24 26.09 50.00 45.16 52.17 85.00 46.15 41.18 47.37 61.54 50.00 40.62 41.67 35.48 41.18 55.56 35.29 56.25 53.85 60.00 38.10 50.00 24.39 41.94 43.90 53.66 41.67 31.03 48.28 46.15 36.00 36.54 42.86 33.33 50.00 37.50 28.57 36.21 42.86 30.00 56.00 44.44 46.15 50.00 33.33 52.94 53.57 35.00 37.04 32.47 K intron_retention CG17224,RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605 chr2L - chr2L_3017726_3017779 chr2L_3017725_3017726;chr2L_3017779_3017780 chr2L_3017384_3017725;chr2L_3017780_3017868 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 4.21 0.95 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 3.70 0.00 2.99 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 1.96 K alternative_acceptor CG5720 chr3R - chr3R_20141243_20141313 chr3R_20141252_20141313 chr3R_20141314_20143563;chr3R_20140982_20141242 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Not1,I_chr2R_5463624_5463682 chr2R - chr2R_5457662_5457718 chr2R_5457661_5457662;chr2R_5457718_5457719 chr2R_5456490_5457661;chr2R_5457719_5460288 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA B52,E_chr3R_9488770_9491174 chr3R + chr3R_9491971_9492016;chr3R_9491971_9492077 chr3R_9491971_9492140 chr3R_9491806_9491970;chr3R_9492141_9492586 100.00 99.86 100.00 100.00 100.00 100.00 98.92 99.66 99.51 100.00 100.00 100.00 99.47 100.00 100.00 100.00 100.00 100.00 100.00 99.73 100.00 100.00 100.00 100.00 99.25 99.60 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.78 99.81 99.42 99.72 99.69 99.78 100.00 100.00 100.00 100.00 100.00 98.79 99.69 100.00 99.56 99.86 99.75 99.87 100.00 100.00 100.00 100.00 100.00 99.68 100.00 K intron_retention I_chrX_15680663_15680821,Rhp chrX + chrX_15684422_15684775 chrX_15684421_15684422;chrX_15684775_15684776 chrX_15684280_15684421;chrX_15684776_15684892 7.42 NA NA NA NA NA NA 6.25 NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA 7.14 NA 20.00 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA K multi_cassette CG30118,I_chr2R_14320281_14325712,I_chr2R_14325118_14325712 chr2R - chr2R_14320281_14325712 chr2R_14320281_14324101;chr2R_14324234_14325079;chr2R_14325118_14325712 chr2R_14324102_14324233;chr2R_14325080_14325117 chr2R_14320181_14320280;chr2R_14325713_14325780 83.33 100.00 87.50 90.00 80.00 83.33 50.00 100.00 90.91 NA NA 100.00 NA NA 85.71 87.50 83.33 100.00 100.00 77.78 100.00 62.50 83.33 83.33 NA 75.00 100.00 71.43 NA 80.00 72.73 NA 83.33 100.00 NA NA 87.50 60.00 83.33 83.33 75.00 88.89 100.00 60.00 83.33 85.71 80.00 85.71 76.92 71.43 83.33 100.00 100.00 75.00 83.33 100.00 83.33 100.00 K intron_retention Shawn_Tyler,Zw chrX + chrX_19564777_19564838 chrX_19564776_19564777;chrX_19564838_19564839 chrX_19564739_19564776;chrX_19564839_19565056 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 5.06 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 K intron_retention CG7766,I_chrX_8993495_8994545,I_chrX_8991338_8991387 chrX - chrX_8989685_8991387 chrX_8989684_8989685;chrX_8991387_8991388 chrX_8989428_8989684;chrX_8991388_8991487 78.26 78.05 73.53 78.95 84.00 72.22 52.78 58.33 86.79 80.00 85.19 76.19 78.26 77.78 81.25 74.19 78.57 86.96 65.71 75.00 75.00 83.33 80.28 76.27 71.88 64.71 81.25 88.89 69.49 86.05 52.38 79.17 76.09 82.86 70.00 88.57 93.18 82.61 88.71 77.36 62.96 81.25 78.26 90.70 64.52 72.09 76.67 52.78 82.93 78.95 78.18 84.62 90.00 79.31 78.12 87.50 77.27 75.00 K alternative_donor CG10089 chr3L - chr3L_13462170_13462301 chr3L_13462170_13462235 chr3L_13462053_13462169;chr3L_13462302_13462312 92.31 90.00 80.00 94.74 100.00 94.12 89.47 89.47 83.33 100.00 90.00 88.46 100.00 83.33 100.00 100.00 90.00 94.74 93.33 84.62 100.00 92.31 93.33 92.31 66.67 100.00 81.25 NA 100.00 90.00 80.00 88.89 92.31 95.45 84.62 84.62 80.00 90.00 93.33 100.00 66.67 95.24 91.67 100.00 100.00 88.89 91.67 90.91 96.15 92.86 93.33 87.50 100.00 100.00 93.33 80.00 95.00 94.44 K alternative_last_exon CG30115 chr2R - chr2R_14448674_14498185 chr2R_14488891_14498185 chr2R_14447029_14448673 chr2R_14488607_14488890 chr2R_14498186_14498559 4.76 0.00 10.00 3.70 0.00 5.88 18.18 9.09 5.00 0.00 13.33 13.51 14.29 12.50 10.53 18.75 7.14 13.33 10.53 5.41 12.50 7.79 4.17 4.17 3.57 7.69 2.63 4.55 9.38 3.03 5.00 0.00 5.71 6.45 3.23 3.70 1.75 6.25 3.92 4.00 0.00 7.50 7.69 3.12 4.55 4.55 5.26 9.68 5.56 3.45 4.17 4.17 0.00 0.00 4.35 4.76 0.00 0.00 K intron_retention RhoL chr3R - chr3R_5323525_5323601 chr3R_5323524_5323525;chr3R_5323601_5323602 chr3R_5323354_5323524;chr3R_5323602_5323886 0.00 0.00 0.00 0.93 0.00 0.83 0.00 0.26 0.60 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.50 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.45 0.51 0.00 0.59 1.20 1.38 0.87 0.00 0.32 0.31 0.00 0.00 1.49 0.00 0.61 0.30 1.24 0.34 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.59 0.59 K alternative_donor CG34148 chr3R - chr3R_17703800_17703967 chr3R_17703800_17703954 chr3R_17703658_17703799;chr3R_17703968_17704030 100.00 NA 100.00 NA NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 87.50 NA 100.00 NA 100.00 90.91 94.12 100.00 NA 87.50 83.33 NA NA 84.62 100.00 100.00 NA 100.00 90.91 100.00 95.24 87.50 NA NA 100.00 88.89 91.67 100.00 95.00 100.00 100.00 100.00 94.74 100.00 100.00 95.24 100.00 NA 100.00 100.00 87.50 100.00 100.00 95.45 97.06 K intron_retention Itp-r83A chr3R + chr3R_1362629_1362692 chr3R_1362628_1362629;chr3R_1362692_1362693 chr3R_1362436_1362628;chr3R_1362693_1362815 6.78 NA NA 4.76 NA 0.00 15.38 4.65 8.33 NA NA 8.33 9.09 0.00 0.00 6.78 0.00 11.11 6.90 13.79 0.00 0.00 14.29 14.29 NA 42.86 23.53 NA 16.67 0.00 3.57 0.00 6.67 12.12 0.00 NA NA NA NA 6.25 25.00 4.76 5.00 9.09 NA 11.76 NA 9.09 7.32 17.65 0.00 NA NA NA 0.00 NA NA 2.70 K alternative_acceptor CG14235,noncoding_24847,CG18809,noncoding_24848 chrX - chrX_19635202_19638294;chrX_19635199_19638294 chrX_19635236_19638294 chrX_19638295_19638317;chrX_19634765_19635198 0.95 1.45 0.00 1.44 0.35 0.42 0.79 0.72 0.97 0.84 0.74 0.92 0.92 0.96 0.85 1.69 0.92 1.15 0.70 1.28 0.38 1.27 0.96 0.74 0.69 0.38 0.71 0.74 2.56 2.31 0.29 1.92 2.90 0.90 2.15 0.85 0.95 0.49 0.95 0.68 2.50 0.57 1.05 0.85 1.56 1.85 1.51 3.51 1.31 1.73 1.83 1.12 0.76 1.50 0.32 1.45 0.78 1.71 K intron_retention sd,noncoding_23930,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15706568_15707633 chrX_15706567_15706568;chrX_15707633_15707634 chrX_15706468_15706567;chrX_15707634_15707635 94.12 NA NA 91.67 NA NA 100.00 94.12 86.67 NA 100.00 100.00 NA 100.00 NA 92.86 NA NA 90.00 92.86 NA NA 88.89 NA NA NA 90.91 NA 88.89 94.74 100.00 NA 100.00 100.00 NA 94.12 NA NA NA 88.89 NA 100.00 NA NA NA NA NA 91.67 92.31 NA 90.91 NA NA NA 100.00 NA NA 100.00 K cassette CG3630 chrX + chrX_2061201_2064821 chrX_2061201_2062101;chrX_2062267_2064821 chrX_2062102_2062266 chrX_2061038_2061200;chrX_2064822_2065118 100.00 100.00 NA NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA NA NA NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 88.89 NA NA 100.00 88.89 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 K intron_retention CG10874 chr2L - chr2L_2190647_2190706 chr2L_2190646_2190647;chr2L_2190706_2190707 chr2L_2189869_2190646;chr2L_2190707_2190784 14.29 NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 36.84 5.88 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA 0.00 NA NA NA 14.29 NA NA NA 14.29 NA NA NA 11.76 NA K jcn_only_AA Gug,R_chr3L_8444636_8444874,I_chr3L_8455244_8456103 chr3L + chr3L_8462783_8463253 chr3L_8462783_8463187 chr3L_8462665_8462782;chr3L_8463254_8463287 52.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 52.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette RI_chr4_980473_983026,noncoding_20846,R_chr4_980665_983026,R_chr4_980665_983029,R_chr4_980750_982876,R_chr4_980750_983026 chr4 + chr4_980665_983029 chr4_980665_982876;chr4_982974_983029 chr4_982877_982973 chr4_980650_980664;chr4_983030_983080 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA EDTP chr2R - chr2R_13320873_13320924;chr2R_13320861_13320924 chr2R_13320840_13320924 chr2R_13320925_13321563;chr2R_13320696_13320839 97.62 100.00 100.00 97.30 95.65 NA 100.00 97.62 94.12 NA NA 96.30 100.00 NA 91.30 100.00 NA 96.77 100.00 98.11 NA 94.12 97.62 96.30 NA NA 100.00 100.00 95.00 95.00 100.00 NA 96.00 100.00 NA 95.83 97.06 100.00 100.00 100.00 92.31 96.77 100.00 91.30 100.00 100.00 90.00 95.00 100.00 95.92 100.00 92.31 NA NA 95.83 97.06 100.00 100.00 K jcn_only_AD CG14803,CG14805 chrX + chrX_1763261_1763330 chrX_1763276_1763330 chrX_1763331_1763911;chrX_1762927_1763260 100.00 NA 100.00 96.88 100.00 100.00 100.00 100.00 100.00 NA NA 97.50 NA NA 93.10 100.00 NA NA NA 100.00 NA NA 100.00 90.91 NA 100.00 100.00 NA NA 92.59 NA NA 100.00 100.00 NA 100.00 95.45 NA 97.14 100.00 NA 97.67 NA 95.65 100.00 100.00 NA 96.43 100.00 NA NA 92.86 NA NA 100.00 NA 100.00 100.00 K intron_retention akirin,I_chr3L_7363211_7364831 chr3L + chr3L_7365620_7365680 chr3L_7365619_7365620;chr3L_7365680_7365681 chr3L_7365263_7365619;chr3L_7365681_7366121 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.37 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 1.68 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.81 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor RhoGDI chr3L + chr3L_19921875_19923914;chr3L_19921911_19923914 chr3L_19922009_19923914 chr3L_19923915_19924114;chr3L_19921868_19921874 93.48 92.00 92.59 96.67 91.30 93.75 97.94 96.32 94.08 90.91 91.67 95.19 90.24 97.01 91.89 91.94 88.52 93.48 92.21 91.75 94.12 90.70 97.67 97.30 92.86 91.23 97.44 100.00 95.65 92.59 92.19 85.00 61.11 89.38 100.00 96.55 92.31 93.55 92.86 89.66 94.74 92.68 94.34 100.00 85.71 97.22 97.06 85.71 94.12 93.33 97.62 94.44 96.43 100.00 91.67 97.50 96.30 92.31 N cassette Aldolase,I_chr3R_22083764_22086684 chr3R - chr3R_22082030_22082654 chr3R_22082030_22082256;chr3R_22082346_22082654 chr3R_22082257_22082345 chr3R_22081992_22082029;chr3R_22082655_22082854 3.90 3.90 3.00 8.33 3.39 7.69 3.53 7.87 4.79 8.79 3.06 5.31 6.41 5.77 6.06 3.54 2.60 15.25 2.56 5.41 6.49 10.53 4.09 4.73 4.00 5.81 3.16 6.07 4.06 4.85 5.41 3.12 3.14 5.22 4.46 1.80 3.18 3.38 2.76 3.83 3.37 6.55 6.67 3.70 3.07 2.04 4.55 2.68 3.12 3.02 3.17 2.25 1.27 2.94 3.85 5.45 1.20 5.45 K jcn_only_AA RI_chrX_8468338_8469380,I_chrX_8468338_8477573,CG12065,CE_chrX_8469528_8477573 chrX + chrX_8468441_8469386;chrX_8468441_8469383 chrX_8468441_8469380 chrX_8468351_8468440;chrX_8469387_8469480 53.67 54.10 48.15 53.67 42.86 50.00 54.63 49.33 54.93 57.73 61.82 53.85 37.76 49.21 58.27 48.58 59.38 58.70 51.80 51.52 54.87 47.22 55.46 49.21 49.45 57.89 50.00 55.56 61.26 49.39 54.65 55.17 46.79 52.86 47.90 46.60 50.23 51.49 46.46 54.49 60.00 52.76 52.99 60.21 54.76 48.28 51.49 58.73 58.72 52.00 53.11 54.60 57.14 58.75 53.74 56.74 55.07 51.74 K jcn_only_AA babo chr2R + chr2R_4840535_4842238 chr2R_4840535_4840607 chr2R_4839846_4840534 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 95.24 97.26 NA 100.00 100.00 100.00 100.00 100.00 100.00 97.75 100.00 100.00 98.78 100.00 100.00 95.65 97.56 100.00 96.36 100.00 100.00 100.00 98.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 98.46 95.45 99.38 100.00 100.00 100.00 100.00 100.00 NA 95.45 NA NA 100.00 K jcn_only_AD Pk61C,I_chr3L_143454_143514 chr3L + chr3L_143218_143514 chr3L_143454_143514 chr3L_143515_143614;chr3L_142943_143217 1.43 1.79 1.75 3.54 1.59 4.17 7.69 0.00 0.00 NA 0.00 2.54 0.00 0.00 0.00 0.00 1.96 7.69 2.86 0.79 0.00 6.25 1.72 0.00 2.94 1.52 1.72 0.00 13.89 3.70 1.67 NA 0.00 1.67 2.38 0.00 4.00 0.00 11.54 1.43 3.33 0.00 0.00 2.63 0.00 4.17 0.00 0.00 0.88 6.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.13 K intron_retention Vha16,I_chr2R_2519645_2520499,RI_chr2R_2519646_2519840,I_chr2R_2519646_2520292,I_chr2R_2519646_2520298,I_chr2R_2519775_2520499 chr2R - chr2R_2519646_2520499 chr2R_2519645_2519646;chr2R_2520499_2520500 chr2R_2519546_2519645;chr2R_2520500_2520599 11.20 12.01 11.88 11.90 12.54 9.66 22.66 15.31 13.78 8.25 14.63 12.87 13.11 11.58 11.48 10.97 13.20 13.08 16.56 12.97 11.20 10.33 9.83 8.15 13.92 25.07 13.21 10.43 17.83 7.00 9.26 5.84 9.85 13.91 13.90 19.21 8.12 8.14 7.88 9.49 14.29 10.51 11.96 6.30 6.29 5.26 6.74 6.67 9.83 9.91 9.92 11.72 8.45 12.62 11.06 8.15 11.76 6.27 K intron_retention pnr,RI_chr3R_11852561_11855192 chr3R + chr3R_11860829_11864308 chr3R_11860828_11860829;chr3R_11864308_11864309 chr3R_11860761_11860828;chr3R_11864309_11864920 0.00 0.00 7.41 5.71 4.55 4.35 0.00 5.88 3.85 0.00 0.00 2.17 8.33 15.00 4.00 8.33 0.00 2.44 0.00 0.00 7.69 3.03 2.63 5.13 0.00 0.00 11.11 12.00 0.00 3.85 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 10.42 1.96 0.00 4.65 NA 3.77 0.00 0.00 0.00 0.00 6.12 0.00 0.00 0.00 NA 0.00 13.04 0.00 0.00 0.00 K multi_cassette CG10669,I_chr3R_21159696_21160749 chr3R - chr3R_21159696_21160749 chr3R_21159696_21159868;chr3R_21160115_21160169;chr3R_21160673_21160749 chr3R_21159869_21160114;chr3R_21160170_21160672 chr3R_21159596_21159695;chr3R_21160750_21160849 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 66.67 100.00 66.67 100.00 NA 100.00 100.00 K alternative_donor 14-3-3zeta,I_chr2R_5987356_5991764,I_chr2R_5987603_5991760,I_chr2R_5988662_5991760,I_chr2R_5988666_5991760,I_chr2R_5988919_5991760,I_chr2R_5988931_5991760,I_chr2R_5990647_5991760,I_chr2R_5991249_5991760,I_chr2R_5991689_5991760,I_chr2R_5993610_5993957,I_chr2R_5993331_5994971 chr2R + chr2R_5987244_5991760;chr2R_5987237_5991760 chr2R_5987356_5991760 chr2R_5991761_5991860;chr2R_5987235_5987236 61.58 65.09 58.47 57.00 39.44 61.85 65.44 57.02 48.28 80.00 55.07 61.58 50.96 58.77 57.54 55.67 47.69 44.69 58.80 50.74 55.00 65.08 71.93 63.00 67.03 66.90 74.42 76.67 64.15 75.44 58.91 60.34 66.29 59.10 89.66 90.77 40.82 59.38 63.16 67.47 71.43 55.91 55.94 72.41 56.04 78.82 65.93 70.10 59.54 60.67 80.65 56.44 75.56 86.27 58.01 66.02 57.00 70.27 K intron_retention CG10103,noncoding_10997 chr3L - chr3L_6747908_6748046 chr3L_6747907_6747908;chr3L_6748046_6748047 chr3L_6747845_6747907;chr3L_6748047_6748104 67.95 60.00 83.33 81.82 NA 75.00 73.33 78.95 81.82 31.25 60.00 61.29 66.67 90.91 62.50 92.86 NA 72.73 69.23 75.00 54.55 88.89 75.00 73.68 28.57 NA 34.62 20.69 63.64 66.67 55.56 61.11 84.00 73.91 NA 90.00 61.11 NA 41.67 81.82 36.67 60.00 83.33 62.50 50.00 73.33 72.22 62.50 70.83 60.87 59.09 71.43 53.85 64.71 75.00 88.89 50.00 76.00 K intron_retention Karl,I_chrX_11687161_11687475,I_chrX_11689220_11690898 chrX + chrX_11683137_11684890 chrX_11683136_11683137;chrX_11684890_11684891 chrX_11682813_11683136;chrX_11684891_11685028 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.06 0.00 0.12 0.00 0.09 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA l(1)G0196,I_chrX_21900456_21904601 chrX + chrX_21905577_21906869 chrX_21905577_21906064 chrX_21905205_21905576;chrX_21906870_21906886 100.00 100.00 100.00 100.00 100.00 98.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Rm62,I_chr3R_1827459_1827554,I_chr3R_1828444_1829394,I_chr3R_1828476_1829394 chr3R - chr3R_1827459_1829394 chr3R_1827458_1827459;chr3R_1829394_1829395 chr3R_1827359_1827458;chr3R_1829395_1829494 1.30 0.69 1.55 1.78 1.82 1.09 1.62 1.78 1.17 1.45 3.03 2.85 2.33 2.20 1.90 1.71 2.70 1.66 2.46 1.09 2.02 13.86 0.83 0.88 0.83 1.07 0.96 1.56 0.92 0.96 2.37 1.30 0.81 1.69 1.42 1.14 0.88 1.04 0.96 1.53 0.99 1.07 1.73 1.45 1.01 1.94 0.64 2.37 1.67 0.79 0.88 1.24 1.01 0.84 1.80 0.93 0.92 1.30 K intron_retention Tis11 chrX + chrX_12572090_12572366 chrX_12572089_12572090;chrX_12572366_12572367 chrX_12571770_12572089;chrX_12572367_12573736 0.00 0.00 1.09 0.82 1.32 0.00 0.00 0.00 0.50 0.00 0.00 1.31 0.00 0.00 0.00 0.00 0.00 2.50 0.00 1.24 0.00 1.15 0.00 0.97 0.00 0.00 0.00 4.55 0.00 0.00 1.28 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 3.45 0.64 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor cno,I_chr3R_999718_999986,I_chr3R_999737_999777,RI_chr3R_1002318_1003015 chr3R - chr3R_1002013_1003015 chr3R_1002318_1003015 chr3R_1003016_1003115;chr3R_999987_1002012 0.00 2.44 0.00 2.04 0.00 0.00 1.89 1.96 1.32 0.00 0.00 1.47 0.00 0.00 3.45 0.00 0.00 0.00 0.00 1.30 0.00 1.09 1.94 0.00 0.00 0.00 3.92 5.06 0.00 1.85 0.00 0.00 1.15 0.00 0.00 1.37 1.27 1.67 0.00 1.23 0.00 3.49 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 2.94 0.00 0.00 K alternative_acceptor cni,RI_chr2L_16309575_16309999,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16310624_16310690;chr2L_16310637_16310690 chr2L_16310641_16310690 chr2L_16310691_16310700;chr2L_16310441_16310623 48.78 52.27 45.59 53.85 48.21 49.21 46.55 48.00 54.19 52.00 52.00 50.91 49.02 56.92 46.91 51.69 58.33 35.71 53.61 41.58 48.78 54.55 50.98 45.16 56.25 38.89 70.97 61.11 48.28 52.17 41.43 50.00 48.15 48.18 42.42 52.17 47.73 57.78 50.85 47.46 48.48 61.06 41.79 41.03 33.33 42.50 48.57 48.15 51.88 45.00 62.75 61.70 33.33 38.46 52.13 47.62 39.13 50.00 K intron_retention CG7429 chr2L + chr2L_8041699_8041758 chr2L_8041698_8041699;chr2L_8041758_8041759 chr2L_8041309_8041698;chr2L_8041759_8041879 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA 6.25 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 7.69 NA NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA K intron_retention Jupiter,I_chr3R_7418347_7445425,RE_chr3R_7419487_7429863,I_chr3R_7429934_7430307,I_chr3R_7429962_7445425,I_chr3R_7430006_7445425,RI_chr3R_7442748_7445425,RI_chr3R_7442793_7445425 chr3R - chr3R_7419489_7445425 chr3R_7419488_7419489;chr3R_7445425_7445426 chr3R_7419355_7419488;chr3R_7445426_7445525 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.08 0.00 0.00 0.16 0.09 0.00 0.00 0.24 2.31 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.45 0.18 0.09 0.00 0.00 0.00 0.00 0.27 0.00 0.18 0.00 K intron_retention Lasp,I_chr3L_16671761_16673911,R_chr3L_16672970_16673911,RI_chr3L_16674471_16704042 chr3L - chr3L_16672970_16673911 chr3L_16672969_16672970;chr3L_16673911_16673912 chr3L_16672870_16672969;chr3L_16673912_16674011 88.51 86.11 85.25 70.71 94.23 87.50 84.38 88.29 88.77 91.74 72.60 82.82 100.00 87.50 88.14 89.16 94.23 77.42 96.15 90.99 73.44 65.73 88.51 92.31 90.43 82.61 90.27 90.06 79.18 85.88 88.89 93.39 83.83 88.89 86.67 97.35 84.85 85.86 92.36 88.06 86.13 90.85 89.47 89.71 74.71 93.96 88.12 91.23 91.45 86.57 89.23 87.84 96.03 91.14 83.05 92.86 82.93 93.23 K jcn_only_AD vlc chr2R + chr2R_1589953_1590371;chr2R_1589894_1590371;chr2R_1589799_1590371;chr2R_1589805_1590371;chr2R_1590318_1590371;chr2R_1589807_1590371;chr2R_1589722_1590371;chr2R_1589693_1590371 chr2R_1590294_1590371 chr2R_1590372_1590451;chr2R_1589612_1589692 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 4.76 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 1.33 0.00 3.33 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 1.41 0.00 1.85 0.00 0.00 0.00 0.00 0.00 1.82 1.75 0.00 0.00 0.00 0.00 0.00 K intron_retention Rtnl1,I_chr2L_4994995_5006383,RE_chr2L_4994997_5008180,I_chr2L_4999312_5000248,I_chr2L_4999386_4999670,I_chr2L_4999386_5000201,I_chr2L_5027222_5028118 chr2L - chr2L_4999340_5000248 chr2L_4999339_4999340;chr2L_5000248_5000249 chr2L_4999286_4999339;chr2L_5000249_5000301 100.00 NA 100.00 94.12 100.00 100.00 95.45 96.30 96.88 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 94.12 NA 100.00 100.00 100.00 NA NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 90.00 NA 100.00 100.00 100.00 93.55 K alternative_donor RpS13,RI_chr2L_8364126_8364208,I_chr2L_8364128_8364191 chr2L - chr2L_8364126_8364208 chr2L_8364126_8364187 chr2L_8364028_8364125;chr2L_8364209_8364291 99.97 99.97 99.89 99.92 100.00 99.96 99.98 99.99 99.97 100.00 99.97 99.94 99.98 99.98 99.42 99.99 100.00 99.98 99.94 99.97 99.98 100.00 99.97 100.00 99.91 99.96 99.88 99.91 100.00 100.00 99.94 99.97 99.91 99.93 99.97 99.97 100.00 99.96 99.98 99.94 100.00 99.99 99.97 100.00 99.97 99.88 99.98 99.98 99.97 99.97 99.98 99.94 99.98 99.98 99.97 99.98 99.94 99.95 N cassette CG1578,RI_chrX_11709573_11710335,I_chrX_11710380_11710454 chrX - chrX_11707501_11709202 chrX_11707501_11708729;chrX_11708915_11709202 chrX_11708730_11708914 chrX_11707321_11707500;chrX_11709203_11709572 100.00 100.00 100.00 75.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Sbp2,RI_chr3L_8297501_8297847 chr3L + chr3L_8298069_8298121 chr3L_8298068_8298069;chr3L_8298121_8298122 chr3L_8297848_8298068;chr3L_8298122_8298436 0.00 0.00 0.00 8.51 0.00 0.00 0.00 6.38 1.85 0.00 0.00 1.75 3.45 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.90 11.43 0.00 3.12 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.41 5.00 8.11 6.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.39 10.87 K intron_retention Sos chr2L + chr2L_13819270_13819334 chr2L_13819269_13819270;chr2L_13819334_13819335 chr2L_13818636_13819269;chr2L_13819335_13820184 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_donor None chrU - chrU_4028377_4028681 chrU_4028377_4028479 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 71.88 100.00 K alternative_donor Moe,I_chrX_8774434_8775874,I_chrX_8774434_8791759 chrX - chrX_8774434_8775660 chrX_8774434_8775292 chrX_8774334_8774433;chrX_8775661_8775667 41.67 NA NA 28.57 NA NA 33.33 20.00 41.67 NA 46.15 NA NA NA NA NA NA NA NA 50.00 50.00 NA NA NA NA NA NA NA NA NA NA NA NA 22.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 44.44 NA NA NA NA NA NA NA NA NA K jcn_only_AD Ca-P60A,RI_chr2R_19820338_19820541,I_chr2R_19820338_19821424,CEI_chr2R_19820338_19821830,I_chr2R_19820338_19823289 chr2R - chr2R_19820338_19820817;chr2R_19820338_19820955;chr2R_19820338_19820765 chr2R_19820338_19820781 chr2R_19820238_19820337;chr2R_19820956_19820969 88.45 89.39 88.45 87.24 91.62 85.71 87.70 87.53 90.35 86.17 90.81 89.89 82.57 89.29 91.04 85.58 89.01 89.01 89.23 89.05 89.39 87.29 84.21 90.36 91.67 88.65 81.41 82.14 82.54 90.21 92.31 82.24 87.47 86.96 85.21 89.76 90.43 85.22 90.11 88.45 91.81 88.87 90.40 91.32 86.52 86.32 87.94 86.42 86.18 88.17 86.29 82.93 88.81 92.50 87.71 88.14 89.31 91.73 N alternative_donor noncoding_11987 chr3L + chr3L_11361209_11362158 chr3L_11361655_11362158 chr3L_11362159_11362196;chr3L_11361206_11361208 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 75.00 NA NA NA NA NA NA 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 71.43 75.00 85.71 NA NA NA 100.00 NA NA NA 100.00 K intron_retention fwd,RI_chr3L_319514_319746 chr3L - chr3L_314318_318990 chr3L_314317_314318;chr3L_318990_318991 chr3L_313024_314317;chr3L_318991_319513 0.00 NA 0.00 19.05 NA NA 0.00 6.25 7.41 NA NA 6.67 NA NA NA 0.00 NA NA 7.69 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA 4.35 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K intron_retention CG7358,I_chrX_18784661_18784773 chrX - chrX_18784515_18784773 chrX_18784514_18784515;chrX_18784773_18784774 chrX_18784488_18784514;chrX_18784774_18784782 12.50 11.54 12.50 14.29 25.00 0.00 23.53 6.67 13.64 6.67 17.65 16.13 17.65 16.67 17.86 9.09 13.33 9.09 12.50 12.77 15.38 24.24 6.15 16.67 19.05 10.53 11.43 13.79 21.05 13.51 36.84 NA 6.67 14.29 12.50 5.26 7.25 8.51 11.36 15.62 14.29 14.29 10.00 17.39 0.00 8.33 12.50 5.00 11.36 10.87 20.69 9.68 5.56 9.09 9.09 6.06 9.38 13.33 K intron_retention betaTub97EF chr3R - chr3R_23792924_23792990 chr3R_23792923_23792924;chr3R_23792990_23792991 chr3R_23792730_23792923;chr3R_23792991_23793313 0.84 0.00 0.00 5.31 0.00 0.99 0.00 0.00 0.85 0.00 0.00 1.23 1.75 2.17 1.72 0.56 0.00 0.96 0.00 0.00 0.00 0.48 0.87 0.90 0.82 1.15 1.48 4.10 1.04 1.60 1.18 0.92 1.01 1.85 1.20 0.61 0.61 0.00 0.73 0.61 0.00 1.18 2.78 0.00 1.53 0.47 0.90 0.29 1.18 0.93 0.84 0.00 0.00 0.00 1.38 0.00 0.72 0.88 K jcn_only_AD nmd,CG5390 chr2L - chr2L_10303599_10303782 chr2L_10303599_10303654 chr2L_10302457_10303598;chr2L_10303783_10303945 98.48 98.98 100.00 98.48 100.00 99.22 99.47 99.51 99.59 91.67 98.00 99.54 99.27 99.12 98.79 99.30 100.00 98.10 99.37 99.18 97.98 98.63 95.73 99.12 94.67 98.17 98.70 97.75 97.50 97.73 97.39 96.49 97.47 99.11 97.50 89.23 99.16 98.72 97.56 95.68 96.40 98.81 100.00 97.59 95.61 97.86 98.08 97.32 99.56 97.85 96.21 98.95 97.37 95.71 99.36 100.00 99.22 97.33 N multi_cassette unc-13,I_chr4_897821_902468,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_897821_903242 chr4_897821_899476;chr4_899619_902468;chr4_902576_903242 chr4_899477_899618;chr4_902469_902575 chr4_897721_897820;chr4_903243_903342 25.39 NA NA NA NA NA 13.33 NA 28.57 NA NA 22.22 NA NA NA NA NA NA NA 20.00 NA 10.53 NA NA NA NA NA NA NA NA 30.77 NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K mutually_exclusive spz chr3R - chr3R_22892388_22892843,chr3R_22892922_22894865;chr3R_22892388_22893079,chr3R_22893218_22894865 chr3R_22892388_22892450,chr3R_22892607_22894865 chr3R_22892844_22892921;chr3R_22893080_22893217 chr3R_22892451_22892606 chr3R_22892330_22892387;chr3R_22894866_22895053 48.23 52.86 36.54 36.52 50.94 42.62 72.86 35.04 46.71 61.76 32.14 53.57 31.15 48.08 54.65 36.00 36.17 36.17 50.59 30.43 37.25 64.91 55.26 50.00 56.82 55.07 38.10 45.45 71.15 53.85 42.65 50.00 46.43 40.20 52.00 35.48 55.07 59.52 57.69 58.33 48.28 48.23 47.37 75.00 64.37 48.08 47.37 55.91 45.04 47.37 42.37 51.79 60.56 53.66 47.50 51.52 44.44 39.39 K alternative_acceptor Smc5,I_chr3L_21566234_21566275 chr3L + chr3L_21566011_21566102 chr3L_21566011_21566075 chr3L_21565786_21566010;chr3L_21566103_21566233 94.44 94.44 94.12 87.50 78.57 92.31 100.00 89.19 90.48 100.00 86.67 96.55 100.00 92.31 93.75 100.00 100.00 91.67 90.91 96.67 92.31 95.00 93.75 87.50 90.91 100.00 100.00 100.00 91.67 90.91 94.44 94.44 92.86 100.00 100.00 83.33 96.43 91.67 95.24 92.31 95.45 96.88 91.67 100.00 100.00 100.00 100.00 95.45 94.44 95.83 94.12 100.00 92.86 100.00 84.21 95.65 95.83 96.97 N jcn_only_AA CG13807 chr3L + chr3L_2263295_2263374 chr3L_2263295_2263355 chr3L_2262781_2263294;chr3L_2263375_2263666 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 77.03 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG6665,I_chr2R_12845291_12845765 chr2R + chr2R_12845698_12845765 chr2R_12845697_12845698;chr2R_12845765_12845766 chr2R_12845007_12845697;chr2R_12845766_12845865 0.00 0.00 0.00 2.38 0.00 0.00 0.00 13.16 5.71 0.00 NA 0.00 0.00 0.00 0.00 9.09 0.00 8.33 0.00 2.78 10.00 0.00 0.00 0.00 11.76 0.00 0.00 7.69 0.00 0.00 8.33 0.00 0.00 0.00 NA 8.00 3.45 0.00 10.53 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 4.00 5.56 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention E(bx),I_chr3L_236428_236553,RI_chr3L_236428_236858,RI_chr3L_236451_239054,RI_chr3L_236508_236862,I_chr3L_239004_239054,I_chr3L_239186_239264,I_chr3L_246324_246699 chr3L - chr3L_236428_239054 chr3L_236427_236428;chr3L_239054_239055 chr3L_236408_236427;chr3L_239055_239154 35.44 32.00 25.64 34.33 37.04 41.94 52.63 35.44 39.62 33.33 34.78 38.46 62.16 45.45 28.57 44.07 47.06 35.29 37.25 26.37 35.00 53.85 28.12 30.23 36.67 46.43 38.78 31.03 47.83 25.81 48.48 20.00 21.95 34.62 36.84 65.52 25.53 44.00 31.43 22.22 45.00 40.32 48.48 30.56 31.82 46.88 48.57 28.57 40.24 51.43 38.98 31.25 32.00 29.17 40.91 33.33 34.62 28.21 K intron_retention CG4091,RI_chr2R_19589178_19589633 chr2R - chr2R_19587764_19587820 chr2R_19587763_19587764;chr2R_19587820_19587821 chr2R_19586437_19587763;chr2R_19587821_19588113 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 NA 0.00 3.45 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 12.00 NA 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.44 0.00 NA 0.00 K intron_retention Arf79F,I_chr3L_22863166_22863946,I_chr3L_22863166_22864419,RI_chr3L_22863251_22863389,RI_chr3L_22863251_22863952,I_chr3L_22863251_22864009,I_chr3L_22863251_22864188,I_chr3L_22863251_22864501,I_chr3L_22863251_22864629,RI_chr3L_22863251_22864763,I_chr3L_22863251_22864866,RI_chr3L_22871119_22871250,I_chr3L_22871351_22871733 chr3L - chr3L_22863166_22865023 chr3L_22863165_22863166;chr3L_22865023_22865024 chr3L_22863151_22863165;chr3L_22865024_22865147 98.31 97.64 98.09 97.78 96.80 98.22 98.97 97.20 98.57 99.03 97.96 98.43 98.49 98.90 97.87 97.24 98.82 96.05 98.61 98.03 97.55 99.29 98.42 97.49 99.50 99.50 97.81 98.51 99.34 97.87 96.71 98.76 99.58 97.93 97.87 97.71 99.44 97.37 98.68 96.14 97.69 97.58 97.90 98.41 98.67 96.98 98.61 98.99 98.92 99.49 98.83 97.25 97.66 96.53 98.46 99.05 98.31 99.61 K alternative_donor CG14005,I_chr2L_5801609_5801677 chr2L - chr2L_5801609_5801677 chr2L_5801609_5801671 chr2L_5801509_5801608;chr2L_5801678_5801777 89.44 NA NA 100.00 NA 77.78 100.00 90.91 100.00 NA NA 100.00 NA NA NA 87.50 NA NA NA 100.00 NA 75.00 91.67 84.62 NA NA 87.50 NA NA 81.82 90.00 88.89 91.67 92.86 90.91 81.82 93.75 90.00 94.12 92.86 NA 82.35 NA 100.00 81.82 84.62 NA 71.43 76.92 90.91 81.82 100.00 100.00 87.50 88.89 88.89 87.50 85.71 K intron_retention CG14199 chrX - chrX_19388870_19388932 chrX_19388869_19388870;chrX_19388932_19388933 chrX_19388760_19388869;chrX_19388933_19389086 7.30 4.17 9.09 7.95 2.27 2.90 6.49 7.55 6.19 10.53 7.89 7.30 0.00 4.26 8.33 3.26 10.00 7.69 4.35 7.69 3.51 12.90 9.09 7.23 15.38 16.39 22.03 18.92 16.95 6.82 4.65 8.93 8.06 7.14 8.89 46.15 8.54 8.33 6.10 7.00 14.29 6.15 6.90 5.36 7.55 8.99 5.63 4.35 5.76 7.61 10.64 5.00 2.00 9.80 3.70 6.98 3.54 6.74 K intron_retention RhoGAP71E,I_chr3L_15583097_15589765 chr3L + chr3L_15595616_15597935 chr3L_15595615_15595616;chr3L_15597935_15597936 chr3L_15594743_15595615;chr3L_15597936_15597984 87.50 76.47 93.33 100.00 81.82 92.31 95.45 95.24 88.00 90.00 90.00 87.50 93.75 93.75 92.31 100.00 83.33 84.62 83.33 96.97 90.91 88.24 87.50 83.33 90.91 NA 100.00 89.66 81.82 83.33 88.24 77.78 75.00 80.95 85.71 64.29 75.00 77.78 85.71 95.65 82.35 84.00 100.00 78.95 84.62 94.44 83.33 86.49 89.66 87.50 83.33 87.50 78.57 93.33 100.00 92.31 100.00 85.71 K jcn_only_AA mld chr3R + chr3R_20445827_20445894 chr3R_20445827_20445891 chr3R_20441773_20445826;chr3R_20445895_20445957 100.00 100.00 NA 100.00 95.83 NA 100.00 100.00 100.00 100.00 NA 97.30 100.00 NA NA 96.15 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 NA NA 95.45 NA NA 100.00 97.50 NA NA 97.56 100.00 100.00 100.00 NA 95.83 95.45 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 90.91 NA 97.73 95.65 NA K intron_retention Tm1 chr3R + chr3R_11115162_11120834 chr3R_11115161_11115162;chr3R_11120834_11120835 chr3R_11114826_11115161;chr3R_11120835_11120968 10.77 10.53 10.81 27.59 12.50 14.29 24.05 11.84 14.56 16.67 16.36 14.71 11.76 19.61 14.49 16.90 11.90 15.09 17.65 12.61 10.20 10.71 4.44 7.25 9.30 12.82 22.00 25.93 8.00 8.93 10.61 4.44 5.38 14.00 8.70 16.18 8.96 10.77 9.41 8.43 4.76 10.62 13.04 8.00 2.99 4.26 5.48 7.46 11.86 7.14 15.38 17.95 5.48 5.36 12.68 8.20 4.59 5.11 K intron_retention mfrn,I_chr3R_23770737_23770817,I_chr3R_23771063_23771153,I_chr3R_23771063_23772599 chr3R - chr3R_23770924_23770973 chr3R_23770923_23770924;chr3R_23770973_23770974 chr3R_23770799_23770923;chr3R_23770974_23771062 1.30 0.00 2.99 7.35 0.00 0.00 2.30 0.00 3.25 0.00 0.00 1.01 0.00 0.00 1.75 0.00 0.00 0.00 0.00 1.65 0.00 2.44 5.26 1.32 6.35 8.89 12.36 9.80 16.13 1.39 0.88 0.00 1.75 0.00 2.86 14.10 1.10 2.60 5.05 4.21 6.41 0.96 0.00 2.74 1.15 2.94 1.69 1.30 1.92 3.08 0.92 0.00 3.85 0.00 0.00 0.00 1.23 1.11 K jcn_only_AD CG7656,I_chr3L_15580697_15581083 chr3L - chr3L_15580697_15581265;chr3L_15580697_15581154 chr3L_15580697_15581083 chr3L_15580597_15580696;chr3L_15581266_15581315 0.00 0.00 0.00 3.03 0.00 0.00 0.00 2.70 1.53 2.22 1.54 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.58 0.00 0.00 2.17 0.00 4.00 0.00 0.00 1.56 3.03 3.12 2.13 0.00 4.29 1.92 0.00 0.00 0.00 1.37 0.00 0.81 5.88 0.80 0.00 0.00 1.43 0.00 0.86 0.00 0.98 1.47 1.06 0.00 1.20 1.45 0.00 0.00 0.00 0.00 K alternative_acceptor lkb1 chr3R + chr3R_9504789_9504872;chr3R_9504789_9504847 chr3R_9504789_9504862 chr3R_9504472_9504788;chr3R_9504873_9505152 40.00 47.83 31.25 29.03 36.36 41.67 45.83 46.43 28.57 37.50 40.00 40.62 37.50 46.67 42.86 37.50 40.00 25.00 33.33 40.00 11.11 30.00 NA 50.00 50.00 45.00 40.00 33.33 42.11 42.86 31.25 41.18 40.00 46.15 30.77 NA 31.25 40.00 42.11 32.26 52.94 38.46 NA 50.00 48.00 32.43 30.43 38.10 45.71 45.00 40.00 NA NA 32.00 NA 33.33 38.89 33.33 K intron_retention CG2224 chr3R - chr3R_26282947_26283013 chr3R_26282946_26282947;chr3R_26283013_26283014 chr3R_26282676_26282946;chr3R_26283014_26283126 0.00 0.00 0.00 7.41 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.70 NA NA 0.00 0.00 NA 5.56 0.00 0.00 0.00 2.78 0.00 0.00 NA 0.00 17.65 12.50 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 NA 0.00 1.61 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 13.79 0.00 0.00 NA 0.00 0.00 0.00 0.00 4.17 0.00 K intron_retention Ntf-2,I_chrX_20906749_20909772 chrX + chrX_20907498_20907565 chrX_20907497_20907498;chrX_20907565_20907566 chrX_20907429_20907497;chrX_20907566_20907664 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.00 1.52 0.00 1.39 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 K intron_retention Dgp-1,I_chr2R_14058825_14059758,I_chr2R_14058954_14059942 chr2R - chr2R_14058163_14058222 chr2R_14058162_14058163;chr2R_14058222_14058223 chr2R_14057820_14058162;chr2R_14058223_14058403 0.65 0.64 0.00 0.97 0.00 0.00 0.84 0.65 1.11 1.17 0.46 0.71 1.09 1.06 2.07 0.90 1.10 0.99 0.00 0.47 0.44 0.74 1.12 1.27 1.25 0.00 2.09 3.62 0.82 0.50 0.00 0.45 0.90 0.58 1.03 0.68 0.60 0.83 0.62 1.00 1.96 1.18 0.00 0.62 0.44 0.28 0.68 0.37 0.47 0.63 0.92 1.00 0.00 0.27 0.00 0.21 0.00 0.57 K intron_retention Plip chr3R + chr3R_19585018_19585079 chr3R_19585017_19585018;chr3R_19585079_19585080 chr3R_19584949_19585017;chr3R_19585080_19585146 0.00 0.00 0.00 6.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2387583;chrX_2387710_2388436;chrX_2388671_2395659 chrX_2387584_2387709;chrX_2388437_2388670 chrX_2387149_2387248;chrX_2395660_2395759 2.22 3.77 2.90 0.97 2.17 1.54 1.61 2.21 2.31 3.85 0.00 5.32 1.75 3.39 2.20 1.54 3.03 2.86 2.41 1.96 2.94 2.27 2.22 2.27 2.94 1.69 1.45 0.00 2.70 1.67 1.79 5.56 2.00 2.26 2.22 3.23 1.12 2.63 2.47 2.91 6.25 2.16 1.61 4.05 7.14 2.94 NA 3.03 1.68 0.00 2.04 3.03 2.08 NA 3.00 0.00 0.00 2.04 K alternative_donor skpA chrX + chrX_550433_551131;chrX_550498_551131;chrX_550818_551131;chrX_550638_551131;chrX_550774_551131;chrX_550654_551131 chrX_550523_551131 chrX_551132_551937;chrX_550426_550432 51.11 40.30 46.55 45.28 47.17 47.17 46.39 42.34 40.57 57.58 50.00 48.84 47.06 40.35 53.45 50.00 40.00 36.99 42.86 53.28 48.15 73.53 55.07 43.06 44.44 43.66 70.37 70.21 68.85 60.00 59.09 64.44 61.67 51.11 45.16 74.36 63.64 53.57 55.74 70.93 65.91 45.13 47.73 61.02 64.29 63.49 55.56 65.31 41.67 50.00 53.33 50.85 63.04 51.52 50.00 55.88 47.76 61.36 K jcn_only_AA MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17399683_17403392;chr2R_17399683_17403481;chr2R_17399683_17401733 chr2R_17399683_17401713 chr2R_17399598_17399682;chr2R_17403482_17403550 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 98.95 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.33 100.00 100.00 100.00 100.00 98.28 100.00 100.00 100.00 99.05 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 98.70 98.39 99.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor RpL15 chr3LHet + chr3LHet_2397820_2398049;chr3LHet_2397820_2398143 chr3LHet_2397820_2398127 chr3LHet_2397802_2397819;chr3LHet_2398144_2398454 80.45 80.45 90.80 82.24 80.44 85.95 69.05 87.70 76.91 63.03 82.52 76.44 76.40 74.62 90.44 68.88 85.60 89.49 88.37 88.59 80.45 74.15 70.59 68.26 67.54 87.43 70.86 79.04 81.97 80.61 71.22 86.11 79.70 87.73 77.86 80.21 63.98 65.22 65.66 91.73 82.53 86.57 85.90 91.90 88.94 85.27 64.59 87.66 86.13 62.00 73.53 66.01 95.46 72.50 90.68 68.72 67.64 91.65 K multi_cassette CG12753,I_chr3R_12266126_12266741,Pak3 chr3R - chr3R_12266126_12266741 chr3R_12266126_12266186;chr3R_12266274_12266329;chr3R_12266473_12266529;chr3R_12266679_12266741 chr3R_12266187_12266273;chr3R_12266330_12266472;chr3R_12266530_12266678 chr3R_12266026_12266125;chr3R_12266742_12266841 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 K alternative_donor CG31955,RI_chr2L_3712446_3712767 chr2L - chr2L_3712446_3712767 chr2L_3712446_3712497 chr2L_3712346_3712445;chr2L_3712768_3712862 88.73 80.00 87.95 91.76 92.59 88.73 92.13 89.10 89.11 80.00 92.86 90.08 86.21 89.02 90.00 94.81 91.04 90.62 91.75 85.13 89.09 96.88 76.00 77.88 74.42 91.67 92.06 95.65 85.29 84.85 87.91 86.76 92.86 94.89 85.94 91.43 71.26 65.57 70.93 86.14 88.37 91.03 88.75 66.67 81.93 89.40 82.81 89.04 91.67 72.73 82.11 78.21 78.26 77.57 90.43 69.53 77.14 91.57 K alternative_donor CG1275,I_chr3L_2261108_2261339 chr3L - chr3L_2253272_2253328 chr3L_2253272_2253324 chr3L_2252785_2253271;chr3L_2253329_2253692 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.59 0.83 0.27 0.00 1.02 0.00 0.00 0.76 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.13 K intron_retention CG7011 chr3L - chr3L_15154473_15155599 chr3L_15154472_15154473;chr3L_15155599_15155600 chr3L_15154265_15154472;chr3L_15155600_15155620 0.00 0.00 3.85 2.17 0.00 0.00 6.98 0.00 3.70 NA 0.00 3.23 0.00 0.00 0.00 5.41 0.00 0.00 0.00 2.70 0.00 2.13 0.00 0.00 0.00 0.00 0.00 13.51 0.00 0.00 0.00 0.00 0.00 6.25 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 NA 2.70 0.00 4.76 0.00 0.00 0.00 0.00 2.13 0.00 6.67 K cassette ttv,I_chr2R_10450891_10470424 chr2R + chr2R_10450891_10470424 chr2R_10450891_10452458;chr2R_10452579_10470424 chr2R_10452459_10452578 chr2R_10450791_10450890;chr2R_10470425_10470524 98.63 100.00 98.31 100.00 100.00 100.00 94.23 98.63 99.07 97.83 93.75 100.00 100.00 100.00 98.57 98.31 100.00 97.50 100.00 100.00 96.08 92.86 98.94 98.59 97.67 97.96 98.90 100.00 90.24 95.31 98.08 97.06 98.31 100.00 97.30 100.00 98.90 98.53 98.91 100.00 96.55 99.11 100.00 100.00 97.78 100.00 97.92 98.46 99.07 97.62 98.65 97.67 100.00 100.00 98.44 100.00 97.44 97.62 K intron_retention Lsd-1,CG10375 chr3R + chr3R_19591789_19591851 chr3R_19591788_19591789;chr3R_19591851_19591852 chr3R_19591598_19591788;chr3R_19591852_19592029 19.23 NA NA NA NA NA 23.08 NA 15.38 23.08 NA NA NA NA NA NA NA 50.00 NA 35.71 NA NA NA NA NA NA NA NA NA NA 0.00 23.08 NA NA NA NA NA NA NA 25.00 NA 25.00 NA NA 6.67 7.14 NA 12.50 13.33 NA NA NA NA NA NA NA NA 13.33 K alternative_acceptor sdt,E_chrX_8118081_8119115,C_chrX_8118081_8119117,I_chrX_8131684_8131842 chrX + chrX_8118081_8119111 chrX_8118081_8118817 chrX_8117989_8118080;chrX_8119112_8119214 4.88 2.86 0.00 12.20 13.64 11.11 40.00 4.76 11.54 0.00 NA 3.77 NA 16.67 8.00 6.67 NA NA 14.29 9.80 NA 4.65 3.03 0.00 3.45 19.05 3.85 NA 4.76 5.26 17.65 9.09 2.17 21.05 4.55 3.23 3.57 0.00 2.08 0.00 11.76 6.82 9.09 2.94 4.35 6.67 NA 7.84 8.57 4.55 12.50 3.85 0.00 NA 6.67 5.00 NA 4.26 N cassette 14-3-3zeta,I_chr2R_5987356_5991764,I_chr2R_5993610_5993957,I_chr2R_5993331_5994971 chr2R + chr2R_5992573_5994971 chr2R_5992573_5993206;chr2R_5993331_5994971 chr2R_5993207_5993330 chr2R_5992473_5992572;chr2R_5994972_5995071 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.59 100.00 100.00 100.00 100.00 100.00 100.00 97.72 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention bip2,RI_chr4_481674_487126,RI_chr4_483128_487126,RI_chr4_486609_487126 chr4 - chr4_485367_485422 chr4_485366_485367;chr4_485422_485423 chr4_485355_485366;chr4_485423_485854 7.79 NA NA NA NA NA 7.89 15.38 8.51 NA NA 0.00 NA 0.00 6.67 16.67 0.00 NA 9.09 7.69 0.00 NA NA NA NA NA NA NA 30.77 NA 17.65 NA NA 5.71 NA NA NA NA NA 25.00 NA 6.90 14.29 11.76 NA NA NA 5.00 0.00 NA NA NA NA NA NA NA NA NA K alternative_donor kar,I_chr3R_8510245_8510617,I_chr3R_8510258_8513437,I_chr3R_8514177_8514930 chr3R - chr3R_8510245_8510617;chr3R_8510245_8513437 chr3R_8510245_8510655 chr3R_8510234_8510244;chr3R_8513438_8513461 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA 3.57 0.00 0.00 NA NA NA NA 0.00 NA 20.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 33.33 NA NA 0.00 0.00 NA 0.00 0.00 0.00 20.00 NA NA NA NA NA NA 0.00 K alternative_last_exon nonA,I_chrX_16256088_16259237,I_chrX_16265109_16265346 chrX + chrX_16259676_16265346 chrX_16259676_16260936 chrX_16265347_16265596 chrX_16260937_16262659 chrX_16259620_16259675 71.43 73.68 75.00 78.79 88.89 73.33 75.00 83.72 78.26 71.43 72.73 75.68 68.75 77.27 82.35 69.57 76.47 90.00 71.43 85.11 61.54 63.64 65.22 76.47 80.00 58.33 70.00 72.73 63.64 66.67 64.00 64.29 56.25 75.56 87.50 75.00 69.23 80.00 71.43 64.52 42.11 77.50 75.00 56.25 50.00 63.33 66.67 62.07 71.15 69.57 71.43 78.57 66.67 58.82 68.00 68.18 77.78 50.00 K multi_cassette spen,I_chr2L_187184_187481,I_chr2L_200676_200752 chr2L + chr2L_163002_183760 chr2L_163002_164158;chr2L_164235_175360;chr2L_175448_183760 chr2L_164159_164234;chr2L_175361_175447 chr2L_162988_163001;chr2L_183761_185082 44.44 NA NA 37.50 60.00 NA 55.56 44.44 36.84 NA NA 55.56 NA 25.00 50.00 50.00 42.86 NA NA 57.14 NA 85.71 33.33 NA NA NA NA NA NA 42.86 NA NA NA 38.46 NA 42.86 80.00 NA NA NA NA 50.00 42.86 NA NA NA NA NA 42.86 NA 60.00 NA NA NA NA NA NA NA K alternative_donor MED21 chr3LHet - chr3LHet_601181_601357 chr3LHet_601181_601284 chr3LHet_601118_601180;chr3LHet_601358_601426 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 85.71 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA N jcn_only_AA ras chrX + chrX_10640260_10640453 chrX_10640260_10640321 chrX_10640109_10640259;chrX_10640454_10641105 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N cassette CG1513,I_chr2R_5778649_5778739 chr2R - chr2R_5776630_5778739 chr2R_5776630_5777111;chr2R_5777241_5778739 chr2R_5777112_5777240 chr2R_5776393_5776629;chr2R_5778740_5778839 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.01 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.09 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG31216 chr3R + chr3R_15497466_15512851 chr3R_15497465_15497466;chr3R_15512851_15512852 chr3R_15497309_15497465;chr3R_15512852_15513019 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 2.25 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 14.29 0.00 0.00 0.00 9.52 0.00 0.00 0.00 0.00 0.00 8.33 0.00 2.86 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 3.33 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 K cassette cora,I_chr2R_15129291_15129988 chr2R + chr2R_15124569_15125656 chr2R_15124569_15124844;chr2R_15124947_15125656 chr2R_15124845_15124946 chr2R_15124447_15124568;chr2R_15125657_15125819 0.72 0.67 0.00 0.00 0.00 0.82 1.11 0.78 0.52 0.00 1.18 0.99 0.00 1.32 1.35 1.05 0.87 0.57 0.00 0.51 1.45 0.34 0.72 0.40 2.05 0.67 0.41 0.67 1.66 1.32 1.18 1.98 0.77 0.50 0.61 1.36 0.66 1.16 0.82 0.25 0.00 0.30 0.85 0.55 1.03 0.00 1.07 1.00 1.00 0.43 0.39 1.27 1.79 0.00 0.82 0.71 0.58 1.12 K intron_retention CG5991 chr3R + chr3R_19876703_19877411 chr3R_19876702_19876703;chr3R_19877411_19877412 chr3R_19876688_19876702;chr3R_19877412_19877477 10.53 NA NA 25.00 NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA 11.76 NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA 14.29 11.76 NA NA NA NA NA 10.53 NA 9.09 NA NA NA NA NA NA 8.33 NA NA NA NA NA NA NA NA NA K intron_retention CG11033,I_chr3R_4882567_4883651 chr3R + chr3R_4883813_4884051 chr3R_4883812_4883813;chr3R_4884051_4884052 chr3R_4883652_4883812;chr3R_4884052_4885430 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Syx7,I_chr3L_21439901_21439962 chr3L + chr3L_21439476_21439542 chr3L_21439476_21439523 chr3L_21439298_21439475;chr3L_21439543_21439612 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.72 0.00 0.81 0.00 0.00 0.46 0.00 0.00 0.76 0.57 0.00 0.55 0.57 0.00 0.70 1.22 0.00 1.49 0.81 0.00 0.00 0.00 K alternative_donor Rab7 chr3R + chr3R_19818999_19819667 chr3R_19819052_19819667 chr3R_19819668_19819903;chr3R_19818930_19818998 90.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 87.50 NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA NA NA K intron_retention mld chr3R + chr3R_20446836_20448643 chr3R_20446835_20446836;chr3R_20448643_20448644 chr3R_20446101_20446835;chr3R_20448644_20449325 0.00 0.00 0.00 0.00 0.00 3.23 0.00 2.22 3.08 0.00 0.00 3.28 0.00 0.00 2.78 0.00 0.00 0.00 2.38 1.82 NA 0.00 2.22 2.22 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 3.39 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor F_chr3R_7396835_7396923,wkd chr3R + chr3R_7409279_7409422 chr3R_7409279_7409409 chr3R_7409036_7409278;chr3R_7409423_7409787 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 2.33 0.00 0.00 2.17 0.00 1.92 2.50 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 1.19 0.00 0.00 0.00 0.00 2.78 0.00 1.25 0.00 2.04 0.00 0.00 0.00 1.49 0.00 2.70 0.00 K alternative_donor osa,I_chr3R_13542657_13542834,I_chr3R_13542657_13543500,I_chr3R_13542657_13543662,I_chr3R_13542657_13543668,I_chr3R_13543730_13543786 chr3R - chr3R_13542657_13543968;chr3R_13542657_13543500;chr3R_13542657_13542834;chr3R_13542657_13543668;chr3R_13542657_13543677 chr3R_13542657_13543662 chr3R_13542557_13542656;chr3R_13543969_13544017 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.91 0.00 1.89 0.00 0.00 0.00 0.00 1.47 0.99 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 1.75 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.81 1.89 0.00 0.00 1.89 0.00 0.00 0.00 1.63 0.00 0.00 4.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 K intron_retention armi,I_chr3L_3466623_3467559 chr3L + chr3L_3462300_3462357 chr3L_3462299_3462300;chr3L_3462357_3462358 chr3L_3462127_3462299;chr3L_3462358_3462784 100.00 97.44 100.00 100.00 100.00 100.00 100.00 98.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG4877 chr3L + chr3L_16379595_16379772 chr3L_16379594_16379595;chr3L_16379772_16379773 chr3L_16379486_16379594;chr3L_16379773_16380052 100.00 91.67 90.00 94.12 NA 100.00 100.00 92.86 95.83 NA NA 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 NA 100.00 92.31 100.00 90.00 100.00 100.00 NA 88.89 100.00 NA NA 100.00 88.89 NA 100.00 NA 90.00 100.00 NA 100.00 100.00 100.00 NA 90.00 87.50 NA 100.00 NA 100.00 90.91 NA NA 100.00 NA NA NA K jcn_only_AA Rpp30,I_chr2L_258887_271628 chr2L - chr2L_251442_251526 chr2L_251465_251526 chr2L_251527_251593;chr2L_251376_251441 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 94.12 100.00 K jcn_only_AD Eaf,RI_chr2R_3294566_3294636,I_chr2R_3294566_3294656,RI_chr2R_3294566_3294714,I_chr2R_3294566_3295255,I_chr2R_3294591_3295244 chr2R - chr2R_3294566_3295244;chr2R_3294566_3294634;chr2R_3294566_3294636;chr2R_3294566_3294638;chr2R_3294566_3295280;chr2R_3294566_3294642;chr2R_3294566_3294714 chr2R_3294566_3295176 chr2R_3294491_3294565;chr2R_3295281_3295302 2.94 0.00 3.12 3.85 NA 0.00 0.00 0.00 3.66 NA 3.03 3.70 8.00 4.76 7.69 3.45 0.00 10.00 0.00 4.48 0.00 4.00 2.50 6.45 3.12 3.70 4.35 0.00 3.12 0.00 0.00 6.67 0.00 0.00 NA NA 6.98 0.00 2.44 3.64 0.00 1.89 0.00 3.12 0.00 2.38 12.00 2.38 4.48 0.00 3.70 0.00 2.86 NA 0.00 0.00 4.35 8.93 K cassette lap,I_chr3R_3017854_3019314 chr3R + chr3R_3019411_3024049 chr3R_3019411_3019919;chr3R_3020181_3024049 chr3R_3019920_3020180 chr3R_3019315_3019410;chr3R_3024050_3024362 92.12 100.00 NA 100.00 NA NA 87.50 87.50 90.91 NA 85.71 93.33 60.00 83.33 NA 100.00 NA NA 100.00 100.00 NA NA 100.00 75.00 NA NA NA 85.71 80.00 NA NA NA NA 100.00 NA NA 80.00 NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA 80.00 NA NA NA 87.50 NA NA NA K alternative_donor CG7845 chr2R - chr2R_1963620_1963707 chr2R_1963620_1963675 chr2R_1962569_1963619;chr2R_1963708_1963754 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.11 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 95.00 100.00 96.43 100.00 100.00 100.00 95.65 94.74 100.00 100.00 100.00 100.00 100.00 98.11 100.00 100.00 100.00 96.55 100.00 100.00 100.00 96.67 100.00 100.00 96.97 100.00 100.00 100.00 100.00 98.28 K intron_retention Uhg3,E_chr2L_20647810_20648188,CG2611 chr2L + chr2L_20650461_20650536 chr2L_20650460_20650461;chr2L_20650536_20650537 chr2L_20650124_20650460;chr2L_20650537_20650941 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 6.06 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 12.90 8.20 0.00 0.00 2.94 1.89 0.00 2.17 4.65 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 4.17 2.50 0.00 0.00 2.00 3.90 2.20 0.00 K intron_retention Abl,I_chr3L_16622304_16639909,RI_chr3L_16652567_16654512 chr3L - chr3L_16616389_16616736 chr3L_16616388_16616389;chr3L_16616736_16616737 chr3L_16615447_16616388;chr3L_16616737_16618374 57.75 56.14 60.27 89.02 42.50 40.74 68.18 76.47 51.94 69.62 39.56 69.57 48.08 60.56 58.62 78.57 57.75 49.33 62.12 56.35 48.81 32.44 51.76 58.14 72.22 75.86 58.87 48.68 59.09 50.25 69.31 50.00 19.62 61.29 48.55 84.91 58.92 48.53 52.94 52.00 57.98 49.21 57.58 75.21 40.97 62.64 60.16 60.00 62.04 46.09 55.80 62.65 53.57 55.45 63.27 59.63 55.34 55.67 K intron_retention Dyb,I_chr2R_8338101_8339173,I_chr2R_8348603_8351844 chr2R + chr2R_8325077_8325151 chr2R_8325076_8325077;chr2R_8325151_8325152 chr2R_8325012_8325076;chr2R_8325152_8325395 88.89 90.00 92.86 88.46 83.33 NA 84.21 86.36 80.00 NA 83.33 94.12 77.78 75.00 91.67 77.78 92.31 92.31 78.95 89.47 NA NA 87.50 85.71 NA 92.86 80.00 NA NA NA 100.00 NA 100.00 90.00 NA NA NA 88.89 63.64 92.86 100.00 85.19 100.00 90.00 NA NA NA 77.78 90.48 NA 66.67 90.91 NA NA 93.33 70.00 NA NA K jcn_only_AD Sans,RI_chr2R_8825985_8826072,I_chr2R_8826501_8826591 chr2R + chr2R_8824602_8825904;chr2R_8824595_8825904 chr2R_8824493_8825904 chr2R_8825905_8825980;chr2R_8824445_8824492 1.67 NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3.33 K alternative_acceptor CG1746,I_chr3R_27043646_27044664,I_chr3R_27043667_27043890,I_chr3R_27043667_27044393,RI_chr3R_27044771_27045268 chr3R - chr3R_27043646_27044664 chr3R_27043667_27044664 chr3R_27044665_27044764;chr3R_27043567_27043645 99.90 100.00 100.00 99.55 99.77 100.00 99.84 99.81 99.91 100.00 99.78 99.88 100.00 99.87 99.90 100.00 100.00 100.00 99.87 99.94 99.82 100.00 100.00 100.00 99.81 100.00 99.86 91.54 99.78 99.83 99.90 99.71 99.84 100.00 99.87 98.97 100.00 99.85 99.90 99.83 99.21 99.86 99.84 100.00 100.00 100.00 99.90 99.87 99.93 99.82 99.90 99.78 99.73 100.00 99.79 99.91 99.92 99.90 K intron_retention CG8121,RI_chr3R_5183458_5183705 chr3R + chr3R_5162442_5162500 chr3R_5162441_5162442;chr3R_5162500_5162501 chr3R_5162205_5162441;chr3R_5162501_5162592 0.00 0.00 0.00 2.67 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor drpr,I_chr3L_1718097_1718705,I_chr3L_1718154_1723579,I_chr3L_1720385_1723579 chr3L - chr3L_1718097_1718705 chr3L_1718154_1718705 chr3L_1718706_1718805;chr3L_1718054_1718096 100.00 99.13 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG3887 chr2L + chr2L_5011485_5011535 chr2L_5011484_5011485;chr2L_5011535_5011536 chr2L_5011412_5011484;chr2L_5011536_5012127 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.74 100.00 100.00 99.69 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.62 99.44 100.00 100.00 100.00 100.00 99.45 100.00 99.07 100.00 100.00 100.00 99.64 100.00 100.00 99.69 99.28 100.00 100.00 100.00 100.00 99.36 100.00 99.58 100.00 100.00 100.00 100.00 100.00 99.56 100.00 100.00 K cassette CG8979 chr2R - chr2R_7855985_7856244 chr2R_7855985_7856051;chr2R_7856137_7856244 chr2R_7856052_7856136 chr2R_7855789_7855984;chr2R_7856245_7856313 5.36 4.17 2.56 13.16 3.70 4.35 6.35 2.27 2.53 5.56 4.76 4.76 11.11 5.71 2.86 5.36 3.03 12.50 2.56 8.33 3.85 5.71 4.76 3.70 6.25 4.76 0.00 5.56 6.67 NA 10.53 NA NA 2.27 8.00 18.75 2.94 7.14 5.56 9.09 NA 7.69 7.14 3.45 NA 11.11 4.00 NA 3.64 4.35 8.00 2.08 NA 18.18 8.33 10.53 2.70 NA K jcn_only_AA stck,I_chr3R_4184313_4184380,I_chr3R_4184660_4184730 chr3R + chr3R_4184313_4184380 chr3R_4184313_4184370 chr3R_4184213_4184312;chr3R_4184381_4184446 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.45 99.61 100.00 100.00 99.64 98.68 100.00 99.25 100.00 98.94 100.00 100.00 100.00 100.00 99.39 100.00 99.46 100.00 100.00 99.47 100.00 99.15 100.00 98.60 98.84 100.00 100.00 100.00 100.00 99.58 100.00 100.00 100.00 100.00 99.62 97.85 100.00 100.00 98.94 100.00 100.00 99.60 99.30 100.00 98.96 100.00 100.00 100.00 99.31 99.31 100.00 K intron_retention CG10267 chr3R + chr3R_2283153_2283214 chr3R_2283152_2283153;chr3R_2283214_2283215 chr3R_2283000_2283152;chr3R_2283215_2283831 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3714,I_chr2L_4190825_4191774,I_chr2L_4192969_4193324,I_chr2L_4195905_4196470,I_chr2L_4196780_4197306,RI_chr2L_4196780_4197951,I_chr2L_4196815_4197306,I_chr2L_4196815_4197951 chr2L - chr2L_4196780_4197146 chr2L_4196779_4196780;chr2L_4197146_4197147 chr2L_4196715_4196779;chr2L_4197147_4197191 6.90 0.00 9.09 12.82 14.29 0.00 12.90 14.29 6.35 4.00 0.00 8.77 32.14 20.83 0.00 10.91 6.90 0.00 5.71 4.88 0.00 2.70 8.51 2.94 7.89 12.50 9.52 8.33 7.14 4.35 5.00 NA 4.17 9.52 10.34 30.77 6.67 9.09 10.53 13.04 3.85 10.61 3.45 8.33 NA 6.25 NA 0.00 10.00 4.44 0.00 0.00 NA NA 7.41 4.55 5.26 NA K intron_retention Mob4 chr2R - chr2R_2583337_2583396 chr2R_2583336_2583337;chr2R_2583396_2583397 chr2R_2583268_2583336;chr2R_2583397_2583465 1.13 1.13 1.48 3.41 1.82 0.00 1.38 1.14 1.15 0.95 1.15 1.32 0.00 2.15 1.28 0.00 0.00 0.00 2.20 2.27 0.97 3.03 0.95 0.44 1.49 1.60 3.02 3.15 8.33 0.00 1.80 2.04 1.49 1.18 0.00 0.00 0.87 0.98 1.46 1.59 1.74 0.83 0.00 0.87 0.00 0.00 1.57 0.00 0.84 2.16 0.96 1.77 0.65 0.00 0.00 0.00 0.38 0.00 K jcn_only_AD aub chr2L - chr2L_11000919_11001447 chr2L_11000919_11001269 chr2L_11000786_11000918;chr2L_11001448_11001480 100.00 100.00 100.00 98.67 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.84 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG4699 chr3R + chr3R_11624200_11624442;chr3R_11624133_11624442;chr3R_11624127_11624442 chr3R_11624190_11624442 chr3R_11624443_11624758;chr3R_11623809_11624126 19.75 22.22 18.52 26.37 20.75 18.75 20.00 19.51 20.37 23.61 14.58 22.34 16.67 12.00 15.49 15.69 24.00 17.50 22.81 14.88 23.26 23.57 26.73 19.75 20.75 24.49 23.53 21.43 14.95 16.24 16.07 19.23 20.97 13.25 19.75 25.97 18.69 17.14 15.65 25.50 26.14 23.08 9.30 17.28 14.78 20.88 18.52 21.11 15.60 21.25 22.37 22.92 19.70 26.00 8.77 20.63 17.02 15.04 K intron_retention garz chr2R + chr2R_8218486_8218542 chr2R_8218485_8218486;chr2R_8218542_8218543 chr2R_8217255_8218485;chr2R_8218543_8219603 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.78 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD cact,RI_chr2L_16314859_16315116,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16325055_16325577;chr2L_16325055_16325587 chr2L_16325055_16325493 chr2L_16324333_16325054;chr2L_16325588_16325598 100.00 99.06 100.00 97.37 96.15 99.19 98.75 99.28 99.48 100.00 98.41 97.93 100.00 99.04 100.00 100.00 100.00 96.15 100.00 99.47 100.00 98.46 99.19 100.00 100.00 100.00 100.00 98.86 100.00 98.96 97.87 100.00 98.44 100.00 100.00 100.00 100.00 98.15 100.00 100.00 98.21 99.04 97.44 100.00 98.67 100.00 100.00 99.25 98.40 99.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Fibp,RI_chr3L_19810268_19810326 chr3L - chr3L_19810268_19810330 chr3L_19810268_19810326 chr3L_19810168_19810267;chr3L_19810331_19810426 0.00 0.00 5.13 0.00 0.00 4.55 0.00 2.00 1.89 4.55 NA 0.00 0.00 NA 2.94 0.00 NA 0.00 4.17 0.00 3.85 1.52 2.56 2.70 3.85 0.00 0.00 3.23 2.70 3.23 2.50 0.00 3.45 0.00 NA 3.12 0.00 0.00 1.89 3.28 0.00 0.00 0.00 2.63 0.00 2.04 0.00 1.89 1.64 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 3.03 K cassette CG11168,I_chr3R_20745770_20745849,I_chr3R_20745983_20746038 chr3R + chr3R_20745770_20746038 chr3R_20745770_20745842;chr3R_20745983_20746038 chr3R_20745843_20745982 chr3R_20745670_20745769;chr3R_20746039_20746053 23.08 NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA 44.44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 18.18 NA 25.00 NA NA NA NA NA 23.08 NA NA NA NA NA NA NA NA NA NA K alternative_donor Zyx102EF,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1080463_1081118 chr4_1080463_1081038 chr4_1080446_1080462;chr4_1081119_1081180 96.92 94.12 95.00 97.22 88.89 85.71 96.67 96.97 97.44 NA 100.00 92.31 100.00 100.00 81.82 100.00 94.74 100.00 100.00 96.88 92.31 88.89 95.65 93.75 87.50 100.00 100.00 92.86 91.67 100.00 90.48 100.00 100.00 91.89 91.67 100.00 100.00 92.86 91.67 100.00 100.00 100.00 93.75 100.00 85.71 100.00 100.00 100.00 97.56 81.25 96.00 94.12 100.00 100.00 95.45 100.00 100.00 94.44 K cassette srp,I_chr3R_11825782_11827473,I_chr3R_11826508_11826910 chr3R + chr3R_11825782_11826910;chr3R_11825782_11827473 chr3R_11825782_11826334;chr3R_11826508_11827473,chr3R_11826508_11826910 chr3R_11826335_11826507 chr3R_11825682_11825781;chr3R_11827474_11827573 35.59 36.84 30.25 33.10 32.97 29.25 42.71 41.10 44.74 32.47 32.95 34.05 38.75 36.67 31.45 43.36 41.43 35.35 47.42 42.57 23.53 25.77 39.60 31.40 30.84 37.36 43.15 36.59 36.52 31.46 35.42 38.21 36.10 34.59 34.45 35.67 32.97 32.08 28.27 38.39 29.77 34.15 36.67 44.87 28.75 39.24 38.10 34.69 35.96 38.85 40.94 36.47 35.59 33.33 35.45 35.00 41.04 32.48 N jcn_only_AD bel,I_chr3R_4484110_4485922 chr3R - chr3R_4481629_4481708 chr3R_4481629_4481699 chr3R_4480932_4481628;chr3R_4481709_4483565 23.53 23.50 35.04 30.67 21.99 26.04 24.42 29.17 22.67 17.78 27.37 21.91 24.62 23.88 21.08 35.85 32.79 33.73 42.11 23.67 34.65 23.00 20.47 21.72 22.49 23.53 24.86 17.93 24.75 21.87 30.84 22.70 21.02 26.49 22.17 28.26 30.11 25.00 20.07 23.28 19.27 26.82 30.10 23.40 18.68 21.76 20.66 19.86 25.93 20.50 26.15 29.08 18.57 24.37 25.16 21.88 22.89 20.05 K mutually_exclusive PMCA,I_chr4_350028_350896,E_chr4_350055_363541,I_chr4_350064_350896,I_chr4_350959_363547,I_chr4_352629_354970,I_chr4_352629_358161,RI_chr4_355160_363547,I_chr4_371836_372509,I_chr4_373671_374568,I_chr4_376108_379519 chr4 - chr4_350055_352023,chr4_352629_363547 chr4_350055_350896,chr4_350966_363547 chr4_352024_352628 chr4_350897_350965 chr4_349964_350054;chr4_363548_363641 31.25 25.00 34.62 9.80 38.89 42.86 3.54 35.48 24.32 7.14 41.67 22.22 35.62 21.43 14.81 25.71 22.22 26.32 30.77 47.22 23.53 53.12 29.03 33.33 16.67 19.23 33.33 41.18 29.41 31.25 57.14 56.25 40.91 28.00 26.32 13.33 13.73 50.00 37.50 29.27 34.48 36.67 12.00 56.00 23.53 57.14 52.63 35.71 25.00 45.83 35.71 14.29 12.90 50.00 28.57 47.06 45.83 48.72 K jcn_only_AD Eaf,RI_chr2R_3294566_3294636,I_chr2R_3294566_3294656,RI_chr2R_3294566_3294714,I_chr2R_3294566_3295255,I_chr2R_3294591_3295244 chr2R - chr2R_3294566_3295176;chr2R_3294566_3295244;chr2R_3294566_3294634;chr2R_3294566_3294636;chr2R_3294566_3294638;chr2R_3294566_3295280;chr2R_3294566_3294642 chr2R_3294566_3294714 chr2R_3294491_3294565;chr2R_3295281_3295302 3.17 0.00 3.12 0.00 NA 3.70 5.71 5.88 1.22 NA 3.03 5.56 12.00 0.00 0.00 6.90 4.76 5.00 7.69 2.99 3.33 0.00 5.00 3.23 0.00 14.81 4.35 0.00 3.12 6.25 0.00 6.67 0.00 5.00 NA NA 0.00 18.18 4.88 1.82 0.00 0.00 18.18 9.38 0.00 4.76 4.00 4.76 1.49 0.00 3.70 0.00 0.00 NA 3.33 0.00 0.00 1.79 K intron_retention Tango13,I_chrX_13480088_13480998,I_chrX_13483861_13483954 chrX + chrX_13480088_13483954 chrX_13480087_13480088;chrX_13483954_13483955 chrX_13479988_13480087;chrX_13483955_13484054 2.92 2.13 2.44 1.94 2.78 1.47 7.89 1.77 3.78 1.61 0.00 2.84 0.00 3.17 3.19 2.15 0.00 19.23 0.00 3.14 0.00 7.69 2.38 4.84 2.41 3.12 3.70 5.41 6.94 5.00 3.70 3.28 2.70 2.65 2.22 3.23 2.55 2.36 3.57 2.92 0.00 3.50 0.00 3.42 3.28 3.74 2.50 4.24 3.73 3.03 1.49 1.32 3.08 3.08 2.50 4.35 3.39 0.00 K intron_retention CG11299,I_chr2R_19619053_19619186 chr2R + chr2R_19618615_19618679 chr2R_19618614_19618615;chr2R_19618679_19618680 chr2R_19618432_19618614;chr2R_19618680_19619052 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 4.55 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 25.00 0.00 0.00 NA NA 0.00 NA NA 7.14 0.00 NA 8.33 0.00 NA 0.00 0.00 0.00 0.00 3.39 NA 2.70 0.00 0.00 0.00 0.00 0.00 10.71 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.03 0.00 0.00 K alternative_donor flr chr3L + chr3L_13406076_13406416 chr3L_13406174_13406416 chr3L_13406417_13406538;chr3L_13405928_13406075 2.73 1.33 1.73 1.60 1.48 1.73 3.24 2.73 2.71 1.22 2.89 2.92 2.82 2.46 3.59 2.82 2.26 4.96 1.18 3.82 1.99 10.12 2.51 2.48 5.00 3.41 7.44 2.80 29.57 2.94 7.69 4.35 3.93 3.91 2.44 5.74 3.80 2.05 2.69 2.52 3.48 2.61 1.52 2.51 2.34 3.08 2.11 3.68 3.28 4.21 2.69 2.73 2.99 3.09 2.31 2.24 2.06 2.31 K intron_retention CG31229,CG7702 chr3R + chr3R_14494525_14494593 chr3R_14494524_14494525;chr3R_14494593_14494594 chr3R_14494331_14494524;chr3R_14494594_14494952 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 NA 2.63 1.72 0.00 0.00 0.00 0.00 6.45 0.00 0.00 0.00 0.00 4.76 0.00 0.00 4.08 0.00 2.70 0.00 0.00 0.00 4.00 0.00 1.79 0.00 0.00 0.00 0.00 5.71 4.08 0.00 0.00 1.33 0.00 0.00 0.00 0.00 K jcn_only_AD CG31689,I_chr2L_2730373_2736310,I_chr2L_2730470_2736310,RI_chr2L_2736137_2736310,I_chr2L_2736230_2736310,I_chr2L_2736431_2737036 chr2L + chr2L_2730373_2736173 chr2L_2730470_2736173 chr2L_2736174_2736229;chr2L_2730370_2730372 12.27 4.55 NA 14.81 NA NA 18.18 13.51 9.30 NA NA 11.63 4.76 NA NA 21.43 4.17 NA 8.00 8.70 NA NA 15.00 10.00 NA NA 16.33 NA NA NA NA NA NA 10.87 NA 14.29 NA 15.00 NA 13.89 NA 12.90 8.70 4.76 NA 24.14 NA NA 20.59 8.00 4.00 15.00 NA NA 6.67 15.00 NA NA K jcn_only_AD Tfb1 chr2R + chr2R_10250584_10250749 chr2R_10250627_10250749 chr2R_10250750_10251018;chr2R_10250565_10250583 20.61 NA NA 21.21 NA 24.00 NA 13.16 18.18 NA NA 22.22 NA NA 18.18 NA NA NA NA 10.34 20.00 NA NA NA NA NA NA NA NA NA NA NA 73.08 14.81 NA NA NA NA NA 52.94 NA 19.05 NA NA 28.26 NA NA 69.57 11.76 NA NA NA NA NA NA NA NA 56.00 K cassette CG10960,I_chr3L_12820683_12835879 chr3L - chr3L_12820683_12835879 chr3L_12820683_12828411;chr3L_12828450_12835879 chr3L_12828412_12828449 chr3L_12820583_12820682;chr3L_12835880_12835979 99.08 98.59 98.82 100.00 98.18 100.00 95.45 99.43 99.49 95.56 98.78 99.28 100.00 100.00 100.00 99.08 98.65 98.57 98.65 100.00 95.52 97.37 100.00 98.41 93.94 89.02 100.00 97.30 100.00 98.55 98.88 96.67 98.70 100.00 100.00 94.74 98.65 100.00 100.00 98.81 90.00 99.35 100.00 100.00 96.55 100.00 97.83 98.39 99.19 100.00 100.00 100.00 100.00 100.00 99.03 100.00 100.00 96.43 K jcn_only_AA Nplp2,I_chr3L_13349726_13349896 chr3L + chr3L_13349953_13350119 chr3L_13349953_13350107 chr3L_13349897_13349952;chr3L_13350120_13350349 99.99 99.99 100.00 99.99 99.99 100.00 100.00 99.99 99.99 100.00 99.98 99.99 99.99 100.00 100.00 99.99 99.98 99.99 99.99 100.00 99.97 100.00 100.00 99.98 99.99 99.99 99.98 99.70 100.00 100.00 100.00 100.00 100.00 99.99 100.00 100.00 99.99 99.99 100.00 99.99 99.99 99.99 99.99 99.98 100.00 99.98 99.99 99.99 99.99 100.00 100.00 99.99 99.99 99.99 99.99 99.99 99.99 100.00 K alternative_donor ran,I_chrX_11040449_11042518,I_chrX_11040462_11041873,I_chrX_11040462_11042000 chrX - chrX_11040462_11042000;chrX_11040462_11042518 chrX_11040462_11041873 chrX_11040362_11040461;chrX_11042519_11042618 0.14 0.14 0.13 0.23 0.00 0.18 0.10 0.09 0.13 0.31 0.00 0.08 0.00 0.16 0.12 0.10 0.19 0.00 0.00 0.14 0.00 0.24 0.12 0.11 0.00 0.13 0.21 0.97 0.42 0.21 0.13 0.23 0.41 0.19 0.18 0.00 0.32 0.17 0.36 0.35 0.32 0.07 0.00 0.16 0.00 0.12 0.00 0.70 0.07 0.22 0.22 0.22 0.00 0.15 0.12 0.23 0.09 0.37 K intron_retention Ku80 chr2L - chr2L_15770842_15770896 chr2L_15770841_15770842;chr2L_15770896_15770897 chr2L_15770609_15770841;chr2L_15770897_15770992 0.00 0.00 0.00 9.52 NA 0.00 7.32 0.00 0.00 NA 18.75 2.13 0.00 0.00 0.00 0.00 0.00 NA 0.00 5.13 7.14 3.57 8.70 0.00 19.23 23.08 10.34 0.00 18.92 0.00 9.30 0.00 0.00 0.00 0.00 17.14 13.04 0.00 0.00 2.27 21.74 7.32 NA 9.38 0.00 10.34 0.00 14.29 0.00 0.00 5.26 9.09 0.00 9.09 3.03 0.00 0.00 3.12 K intron_retention svr,RI_chrX_421417_421591 chrX + chrX_390582_390633 chrX_390581_390582;chrX_390633_390634 chrX_390575_390581;chrX_390634_391422 90.00 NA 88.24 NA 77.78 NA 88.89 94.74 87.10 NA 70.00 95.00 84.62 93.75 88.89 90.00 90.91 92.31 84.21 88.89 91.67 NA 90.91 90.91 87.50 84.62 91.67 NA NA 87.50 95.24 NA NA 95.83 NA 100.00 NA NA NA 92.31 NA 84.00 100.00 90.00 NA NA 88.89 NA 92.86 NA 75.00 92.31 NA NA 63.64 NA 90.00 NA K alternative_acceptor CG3409,I_chr2R_2591946_2592739,RI_chr2R_2593704_2599587 chr2R - chr2R_2591946_2592739 chr2R_2592092_2592739 chr2R_2592740_2592839;chr2R_2591846_2591945 100.00 100.00 92.86 100.00 100.00 92.86 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 66.67 93.75 100.00 90.91 100.00 100.00 NA 100.00 100.00 100.00 NA 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 93.33 100.00 NA 100.00 100.00 100.00 100.00 K cassette I_chr2R_19695638_19696332,RI_chr2R_19699261_19699317,CG4797 chr2R - chr2R_19702258_19705573 chr2R_19702258_19702964;chr2R_19703125_19705573 chr2R_19702965_19703124 chr2R_19702119_19702257;chr2R_19705574_19705752 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA noncoding_23420,hep chrX - chrX_12975077_12975545 chrX_12975152_12975545 chrX_12975546_12976097;chrX_12974671_12975076 39.31 37.50 44.00 60.62 42.64 35.33 16.18 54.19 40.76 36.30 39.22 41.84 42.86 53.76 36.84 51.26 53.91 53.72 54.21 40.62 42.31 50.77 35.06 37.07 52.23 74.14 36.00 45.83 28.57 31.76 49.65 29.88 30.59 46.07 40.99 54.14 36.51 34.58 36.83 39.31 46.92 45.76 42.34 42.31 22.66 32.33 24.88 30.97 32.54 30.80 34.17 39.66 25.62 32.75 50.39 36.17 25.10 22.03 N intron_retention Rip11,E_chrX_18532733_18533695,RI_chrX_18530353_18530870,RI_chrX_18530742_18530870,RI_chrX_18544139_18544185 chrX - chrX_18530353_18531363 chrX_18530352_18530353;chrX_18531363_18531364 chrX_18530253_18530352;chrX_18531364_18531426 100.00 100.00 100.00 NA NA NA 100.00 NA 100.00 NA 45.45 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 66.67 100.00 NA 100.00 100.00 100.00 100.00 NA NA NA NA 100.00 100.00 NA K jcn_only_AD CG3287,I_chr2R_2698891_2699406,I_chr2R_2700203_2700285 chr2R + chr2R_2698681_2699406;chr2R_2698891_2699406;chr2R_2699349_2699406 chr2R_2698654_2699406 chr2R_2699407_2699506;chr2R_2698533_2698653 1.00 1.32 0.00 1.47 0.00 0.97 2.04 0.00 1.36 0.00 1.39 1.56 0.00 1.00 0.73 3.09 2.00 2.60 0.87 0.94 0.00 7.48 4.48 2.94 0.00 1.00 0.00 6.85 0.97 1.02 0.00 3.64 0.00 0.00 0.84 0.94 2.94 1.47 2.94 0.00 0.00 0.65 0.00 2.80 1.09 0.75 2.17 0.92 1.13 0.00 1.45 0.00 1.41 1.43 0.79 1.32 0.00 2.63 K intron_retention IP3K2,I_chrX_13216481_13219804 chrX + chrX_13221631_13221698 chrX_13221630_13221631;chrX_13221698_13221699 chrX_13221381_13221630;chrX_13221699_13221967 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.96 1.25 0.00 1.54 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.79 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 K jcn_only_AD lig,CI_chr2R_3962006_3962916,I_chr2R_3962357_3962977,RI_chr2R_3962875_3962977 chr2R + chr2R_3961910_3962977;chr2R_3962006_3962977 chr2R_3961577_3962977 chr2R_3962978_3963016;chr2R_3961479_3961576 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.26 0.27 0.00 0.00 0.33 0.00 0.37 0.54 0.00 0.40 0.16 0.00 0.37 0.31 0.23 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.36 0.00 K intron_retention dome,I_chrX_19573364_19573474 chrX - chrX_19570482_19570541 chrX_19570481_19570482;chrX_19570541_19570542 chrX_19570128_19570481;chrX_19570542_19572214 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD RpL18A,I_chr2R_13434492_13434554,I_chr2R_13434492_13434576 chr2R - chr2R_13434492_13434913;chr2R_13434492_13434554 chr2R_13434492_13434576 chr2R_13434392_13434491;chr2R_13434914_13434994 0.07 0.08 0.00 0.08 0.17 0.00 0.07 0.00 0.00 0.00 0.03 0.00 0.09 0.08 0.00 0.03 0.00 0.00 0.03 0.01 0.00 0.17 0.00 0.33 0.85 0.06 1.17 0.00 0.54 0.11 0.07 0.04 0.13 0.04 0.00 0.18 0.09 0.25 0.12 0.04 0.11 0.02 0.00 0.07 0.11 0.10 0.16 0.06 0.08 0.00 0.00 0.32 0.11 0.00 0.02 0.11 0.18 0.10 K intron_retention CG12393,CG9135 chr2L + chr2L_6049347_6049413 chr2L_6049346_6049347;chr2L_6049413_6049414 chr2L_6049011_6049346;chr2L_6049414_6049632 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.60 0.00 1.18 0.00 4.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG5270,I_chr3R_7253146_7253201,F_chr3R_7256294_7256363 chr3R + chr3R_7253142_7253201 chr3R_7253146_7253201 chr3R_7253202_7253301;chr3R_7253046_7253141 2.17 2.86 9.09 1.96 0.00 0.00 2.17 2.17 0.00 NA 0.00 3.92 8.00 4.55 3.23 0.00 0.00 4.35 0.00 5.00 0.00 3.03 0.00 2.94 0.00 3.85 0.00 0.00 0.00 3.70 0.00 NA 0.00 2.78 NA NA 4.26 2.78 6.45 0.00 NA 3.03 NA 2.94 NA NA NA 5.00 4.69 NA 2.50 NA NA NA 0.00 0.00 0.00 NA K cassette bbc,I_chr2R_9376554_9377246,REI_chr2R_9379401_9381986 chr2R - chr2R_9375638_9378939;chr2R_9375638_9377246 chr2R_9375638_9376421;chr2R_9376554_9377246,chr2R_9376554_9378939 chr2R_9376422_9376553 chr2R_9375479_9375637;chr2R_9378940_9379098 22.64 22.73 38.64 18.75 12.77 35.90 20.88 27.85 22.58 15.00 16.90 32.10 19.05 36.11 29.41 27.06 20.93 23.88 22.58 27.34 16.87 40.00 22.92 23.86 17.65 29.17 20.00 11.48 12.00 21.05 39.02 26.92 15.38 28.57 32.14 19.79 8.82 23.53 16.25 18.57 17.86 27.47 21.05 22.64 19.15 28.57 32.43 26.32 25.30 18.18 24.59 12.82 22.50 23.68 24.56 18.64 13.56 30.00 K intron_retention CG14701,REI_chr3R_7058154_7058208,RI_chr3R_7061265_7061322 chr3R + chr3R_7057991_7058062 chr3R_7057990_7057991;chr3R_7058062_7058063 chr3R_7057916_7057990;chr3R_7058063_7058153 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 NA 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 4.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Atpalpha,I_chr3R_16788018_16789830,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16789916_16789979 chr3R_16789915_16789916;chr3R_16789979_16789980 chr3R_16789831_16789915;chr3R_16789980_16791761 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG40439,I_chr2L_22690863_22690905 chr2L - chr2L_22690855_22690905;chr2L_22690836_22690905 chr2L_22690863_22690905 chr2L_22690906_22691005;chr2L_22690763_22690835 0.74 0.00 0.00 2.81 0.00 1.89 0.77 2.40 1.15 0.00 0.00 1.48 1.18 0.91 10.81 1.18 0.00 0.00 1.30 2.59 0.00 3.57 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 1.59 2.44 NA 0.74 0.00 0.00 0.00 NA NA 6.38 0.00 3.33 2.94 1.79 NA 0.00 0.00 3.03 0.74 1.85 0.00 0.00 0.00 NA 1.59 0.00 1.14 1.11 K alternative_acceptor Rbp1,Mcm5 chr3R + chr3R_6610646_6611879 chr3R_6610646_6611124 chr3R_6610279_6610645;chr3R_6611880_6612229 25.00 17.50 22.86 50.57 60.00 22.22 34.02 50.43 32.20 15.19 39.02 27.81 48.15 39.71 26.47 53.85 40.00 25.00 43.64 29.32 35.00 20.43 18.07 13.87 17.00 31.58 25.23 25.71 17.78 27.16 43.40 21.25 19.39 39.64 21.05 19.54 13.82 10.62 10.44 23.57 11.93 26.88 32.14 32.88 19.79 24.27 17.19 25.00 32.08 15.65 22.95 21.43 16.54 12.50 30.14 16.06 17.54 25.42 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2388671_2395659 chrX_2388671_2389073;chrX_2389272_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2392054;chrX_2392149_2392515;chrX_2392665_2395659 chrX_2389074_2389271;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521;chrX_2392055_2392148;chrX_2392516_2392664 chrX_2388641_2388670;chrX_2395660_2395759 0.00 NA NA NA NA NA NA NA 0.00 NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention noncoding_5243,I_chr2R_4553376_4563976,l(2)44DEa,I_chr2R_4553577_4562151,I_chr2R_4553817_4565934,I_chr2R_4554300_4563976,I_chr2R_4559579_4559675,I_chr2R_4565692_4565934 chr2R + chr2R_4553376_4562151 chr2R_4553375_4553376;chr2R_4562151_4562152 chr2R_4553371_4553375;chr2R_4562152_4562251 0.00 NA NA 0.00 NA 0.00 16.13 3.57 0.00 NA NA 13.33 NA NA 0.00 6.98 0.00 NA 7.41 NA NA NA NA NA NA 0.00 NA NA NA NA 7.41 NA NA 14.71 NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA 10.81 NA NA NA NA NA 0.00 NA NA NA K intron_retention CG1657 chrX + chrX_11227180_11227254 chrX_11227179_11227180;chrX_11227254_11227255 chrX_11226331_11227179;chrX_11227255_11227351 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 1.12 1.72 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention bdg,I_chr2R_11824086_11824186,CEI_chr2R_11826763_11827279 chr2R - chr2R_11812934_11812999 chr2R_11812933_11812934;chr2R_11812999_11813000 chr2R_11812769_11812933;chr2R_11813000_11814186 0.00 8.57 0.00 6.98 0.00 0.00 0.00 0.00 8.20 0.00 0.00 4.92 0.00 0.00 0.00 0.00 4.17 5.71 15.38 6.45 3.23 4.76 3.92 5.71 0.00 0.00 10.81 9.09 0.00 2.56 0.00 0.00 10.71 0.00 0.00 0.00 0.00 5.71 0.00 5.97 0.00 0.00 0.00 10.53 0.00 6.06 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.41 N cassette Tsp42Ed chr2R - chr2R_2897806_2899096 chr2R_2897806_2897936;chr2R_2898099_2899096 chr2R_2897937_2898098 chr2R_2897608_2897805;chr2R_2899097_2899359 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette sec31,I_chr2R_4783150_4783708 chr2R + chr2R_4783150_4783708 chr2R_4783150_4783458;chr2R_4783559_4783708 chr2R_4783459_4783558 chr2R_4783050_4783149;chr2R_4783709_4783808 98.79 99.15 100.00 99.44 98.94 100.00 94.78 98.19 99.15 97.96 96.74 98.85 100.00 98.91 98.33 99.35 100.00 97.73 98.95 98.79 98.89 93.28 96.45 99.27 97.40 97.85 98.50 98.57 97.30 97.59 94.59 100.00 98.04 99.34 98.80 95.45 99.32 98.17 98.17 99.30 98.31 99.00 98.70 99.11 95.38 97.83 99.15 98.25 99.42 99.22 97.53 98.75 100.00 98.91 100.00 99.01 98.65 98.51 K intron_retention I_chr3R_1303481_1304607,CG31550 chr3R + chr3R_1312607_1313556 chr3R_1312606_1312607;chr3R_1313556_1313557 chr3R_1312598_1312606;chr3R_1313557_1314029 26.67 NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA 28.57 NA 9.52 NA NA NA NA NA NA 30.77 NA 0.00 54.55 33.33 NA 14.29 7.69 12.50 NA 0.00 19.23 NA 30.77 NA NA 6.67 14.29 NA 29.41 46.15 26.67 NA NA NA NA NA NA NA 47.06 K jcn_only_AA RpL9,I_chr2L_11003236_11003510 chr2L - chr2L_11003236_11003510 chr2L_11003239_11003510 chr2L_11003511_11003610;chr2L_11003136_11003235 100.00 99.99 100.00 100.00 100.00 100.00 99.99 100.00 99.99 100.00 100.00 99.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.99 100.00 100.00 100.00 99.99 100.00 100.00 99.99 99.99 99.99 99.99 99.99 99.98 100.00 100.00 100.00 100.00 99.99 100.00 99.99 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.98 99.99 100.00 99.99 100.00 100.00 100.00 100.00 99.98 100.00 99.98 K alternative_acceptor CG31211 chr3R + chr3R_7777961_7778368;chr3R_7777961_7778362 chr3R_7777961_7778390 chr3R_7777954_7777960;chr3R_7778391_7778487 0.00 0.00 0.00 0.00 0.00 6.25 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 4.55 4.00 5.56 K cassette CG17337,REI_chr2R_1585514_1586790,I_chr2R_1585514_1586919,RI_chr2R_1586737_1586790 chr2R + chr2R_1585514_1586919 chr2R_1585514_1586790;chr2R_1586859_1586919 chr2R_1586791_1586858 chr2R_1585414_1585513;chr2R_1586920_1587019 100.00 100.00 96.55 95.83 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 96.30 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG12299 chr2L + chr2L_10737768_10737875 chr2L_10737767_10737768;chr2L_10737875_10737876 chr2L_10737345_10737767;chr2L_10737876_10740765 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 2.33 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 3.45 0.00 0.00 0.00 NA 5.41 13.79 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.50 K alternative_donor Sk1 chrX + chrX_11336742_11337599;chrX_11336791_11337599 chrX_11336654_11337599 chrX_11337600_11340043;chrX_11336565_11336653 16.67 NA NA NA NA NA NA NA 37.50 NA NA NA NA NA NA NA NA NA NA 16.67 NA 28.57 NA NA NA NA NA NA NA NA NA NA 16.67 16.67 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 11.11 NA NA NA NA NA NA NA NA NA N intron_retention CG42394,noncoding_15936,E_chr3R_6675742_6676058 chr3R + chr3R_6677211_6677344 chr3R_6677210_6677211;chr3R_6677344_6677345 chr3R_6677007_6677210;chr3R_6677345_6677430 100.00 100.00 100.00 93.29 100.00 100.00 100.00 92.52 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor I_chr2L_19644636_19644695,REI_chr2L_19702035_19702145,Nf-YB chr2L + chr2L_19736209_19736289 chr2L_19736209_19736272 chr2L_19736042_19736208;chr2L_19736290_19736580 100.00 100.00 97.06 97.56 94.74 100.00 96.55 100.00 100.00 94.44 94.74 97.67 95.45 94.74 100.00 100.00 100.00 100.00 96.77 95.00 94.74 100.00 97.14 100.00 94.12 96.30 100.00 73.91 93.33 94.74 100.00 100.00 94.12 97.30 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 95.92 96.88 97.06 100.00 100.00 100.00 96.00 93.10 100.00 100.00 K intron_retention tho2 chr2L - chr2L_2138159_2138345 chr2L_2138158_2138159;chr2L_2138345_2138346 chr2L_2137984_2138158;chr2L_2138346_2138659 23.87 NA NA 25.00 NA NA 31.82 36.36 31.03 NA 22.22 31.25 NA NA 50.00 17.39 66.67 NA NA 28.57 25.00 NA 18.52 26.32 NA NA 18.18 33.33 8.00 10.53 30.77 12.50 12.50 36.36 16.67 19.35 20.00 NA 27.78 21.43 NA 33.33 NA 28.57 11.76 6.90 NA 22.22 38.89 9.09 33.33 28.57 9.52 NA 42.86 22.73 9.09 18.18 K alternative_donor CG4290,RI_chrX_1954878_1955077,I_chrX_1962457_1964222 chrX - chrX_1954878_1955654 chrX_1954878_1955077 chrX_1954809_1954877;chrX_1955655_1955758 33.33 NA NA NA NA NA 20.00 50.00 40.00 NA NA 20.00 NA NA NA NA NA 100.00 NA NA NA 57.14 NA NA NA NA NA NA 33.33 NA 33.33 NA 66.67 20.00 NA NA NA NA NA 22.22 NA 50.00 NA 20.00 NA NA NA NA 33.33 NA 50.00 NA NA NA 12.50 NA NA NA K intron_retention gp210,I_chr2R_1653709_1654789,I_chr2R_1655359_1655422 chr2R + chr2R_1655566_1656847 chr2R_1655565_1655566;chr2R_1656847_1656848 chr2R_1655423_1655565;chr2R_1656848_1657000 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Nc73EF,I_chr3L_16950628_16951334,I_chr3L_16950952_16952198,I_chr3L_16951588_16952198,I_chr3L_16951626_16952198,I_chr3L_16952138_16952198,I_chr3L_16952985_16955434,I_chr3L_16953768_16954599 chr3L + chr3L_16950628_16952198;chr3L_16950606_16952198 chr3L_16950615_16952198 chr3L_16952199_16952207;chr3L_16950580_16950605 14.64 28.57 13.33 7.14 14.29 12.50 10.00 11.11 18.52 14.29 30.00 27.78 0.00 14.29 20.00 20.00 28.57 20.00 16.67 20.83 12.50 10.00 22.22 21.43 12.50 0.00 12.50 10.00 0.00 NA 12.50 NA NA 13.64 22.22 0.00 15.00 7.14 21.43 18.18 NA 28.57 28.57 14.29 14.29 14.29 37.50 NA 18.18 18.75 15.79 14.29 NA 20.00 12.50 27.27 16.67 NA K jcn_only_AA I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545615_17545855 chr2R_17545615_17545850 chr2R_17545613_17545614;chr2R_17545856_17545985 79.31 87.50 81.54 71.11 81.71 74.16 80.95 82.47 86.11 NA 76.79 77.23 86.00 77.36 79.63 68.52 81.82 67.61 84.51 78.99 75.00 NA NA NA NA 78.69 NA NA NA NA 81.25 88.46 84.62 78.64 NA NA NA NA NA NA NA 76.84 76.92 NA 80.00 NA NA NA 78.30 NA NA NA 84.62 NA 73.58 NA 86.96 75.00 K intron_retention dre4,I_chr3L_1875590_1875651,F_chr3L_1877432_1877517 chr3L - chr3L_1872471_1872581 chr3L_1872470_1872471;chr3L_1872581_1872582 chr3L_1872354_1872470;chr3L_1872582_1872735 5.56 5.97 8.33 7.43 11.11 2.56 6.32 10.11 9.00 0.00 3.45 3.88 4.76 19.35 5.41 10.00 3.45 4.35 11.76 5.23 3.28 12.50 9.02 6.19 4.88 2.00 7.69 16.67 7.41 7.58 4.62 2.99 4.26 6.38 2.82 2.20 6.85 7.46 3.54 5.66 5.98 6.06 7.84 5.56 0.82 4.03 6.98 5.15 5.50 3.37 6.61 6.38 1.72 4.60 5.41 5.71 4.62 2.35 K intron_retention Idh,I_chr3L_8351006_8351949,I_chr3L_8351036_8351655 chr3L - chr3L_8351816_8351949 chr3L_8351815_8351816;chr3L_8351949_8351950 chr3L_8351656_8351815;chr3L_8351950_8351962 91.67 90.91 84.62 100.00 92.86 100.00 94.74 92.86 97.22 NA 94.12 84.85 91.67 94.12 93.75 90.91 93.33 92.86 94.12 91.67 93.33 NA 81.25 81.25 NA 92.31 92.86 91.67 NA 90.91 88.89 NA 92.31 96.30 NA 80.00 91.67 80.00 NA 93.75 90.91 91.30 91.67 90.00 88.89 NA 90.00 75.00 89.29 NA 90.91 87.50 90.91 NA 91.67 87.50 91.67 77.78 K intron_retention CG7222 chr2R + chr2R_6701242_6701535 chr2R_6701241_6701242;chr2R_6701535_6701536 chr2R_6701023_6701241;chr2R_6701536_6701719 5.26 0.00 3.77 5.10 3.70 5.26 6.67 7.34 8.08 8.70 3.45 6.32 2.38 2.17 4.65 7.79 0.00 6.38 7.46 9.91 2.70 16.67 4.84 8.00 7.14 6.67 5.88 10.53 9.68 0.00 9.26 3.45 6.82 6.48 8.00 6.67 7.27 5.71 0.00 10.53 0.00 4.44 2.27 2.86 8.33 5.17 2.38 11.90 6.48 0.00 5.88 0.00 4.35 4.55 3.57 2.70 4.17 4.44 K intron_retention Nlp,I_chr3R_25834987_25835399 chr3R + chr3R_25831144_25835399 chr3R_25831143_25831144;chr3R_25835399_25835400 chr3R_25831010_25831143;chr3R_25835400_25835499 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.14 0.19 0.00 0.23 0.22 0.00 0.00 0.18 0.20 0.00 0.22 0.00 0.08 0.00 0.65 0.16 0.00 0.53 0.00 0.57 0.53 0.00 0.00 0.00 0.00 0.00 0.29 0.96 0.00 0.12 0.00 0.52 0.00 0.00 0.20 0.00 0.20 0.00 0.00 0.00 0.30 0.29 0.00 0.20 0.00 0.21 0.00 0.00 0.15 0.00 0.00 K intron_retention Rab1,I_chr3R_17094214_17094492,I_chr3R_17099005_17099062 chr3R - chr3R_17093280_17093341 chr3R_17093279_17093280;chr3R_17093341_17093342 chr3R_17093232_17093279;chr3R_17093342_17093462 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor RI_chr3R_5088705_5088796,Aats-trp,RI_chr3R_5090799_5091007 chr3R - chr3R_5090780_5091007 chr3R_5090799_5091007 chr3R_5091008_5091107;chr3R_5090699_5090779 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 84.62 100.00 NA 100.00 63.64 92.31 87.50 NA 93.33 100.00 100.00 95.45 NA NA 85.71 85.71 NA 100.00 88.89 96.00 100.00 75.00 NA 100.00 NA NA 100.00 100.00 88.89 88.89 NA NA 95.00 100.00 100.00 90.00 K jcn_only_AA RpL30,I_chr2L_19008540_19008948,REI_chr2L_19008544_19008723,I_chr2L_19008544_19008918,snoRNA:Me28S-A2113 chr2L - chr2L_19008540_19008948 chr2L_19008544_19008948 chr2L_19008949_19009018;chr2L_19008444_19008539 99.98 99.98 99.98 99.98 100.00 99.96 99.98 99.94 99.97 100.00 100.00 99.99 99.98 100.00 100.00 100.00 99.96 99.96 100.00 99.98 99.98 100.00 100.00 99.97 99.98 99.96 99.97 99.98 99.98 99.98 100.00 100.00 99.95 100.00 100.00 99.96 99.98 99.99 100.00 99.97 99.94 99.99 99.95 99.99 99.99 100.00 99.99 99.95 99.95 99.98 99.96 99.96 99.97 99.99 100.00 100.00 99.99 99.98 K alternative_acceptor Cyp9f2,RI_chr3R_8230559_8231431 chr3R - chr3R_8230559_8231431 chr3R_8230612_8231431 chr3R_8231432_8231531;chr3R_8230460_8230558 75.00 NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Vps20 chr2R + chr2R_18496135_18496188 chr2R_18496134_18496135;chr2R_18496188_18496189 chr2R_18496038_18496134;chr2R_18496189_18496298 93.75 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 93.75 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention gish chr3R + chr3R_12127074_12127544 chr3R_12127073_12127074;chr3R_12127544_12127545 chr3R_12126967_12127073;chr3R_12127545_12127876 5.33 5.97 8.22 14.77 0.00 6.67 10.34 7.37 6.12 0.00 3.92 13.33 5.56 3.85 10.71 7.22 8.00 1.82 3.95 6.20 4.55 8.70 4.24 2.75 1.59 7.14 4.08 11.36 2.41 3.12 7.69 5.36 5.10 5.61 3.23 12.20 3.00 1.12 3.12 5.41 6.67 4.65 5.97 4.55 3.03 4.46 0.00 7.46 6.40 2.94 4.63 5.33 0.00 7.25 8.25 3.81 4.59 6.98 K jcn_only_AD mts,RI_chr2L_7828669_7830461,RI_chr2L_7828959_7830461 chr2L + chr2L_7828154_7830461 chr2L_7828669_7830461 chr2L_7830462_7830561;chr2L_7827683_7828153 0.28 0.28 0.22 0.14 0.00 0.00 0.17 0.00 0.32 0.00 0.00 0.26 0.00 0.27 0.46 0.32 0.00 0.00 0.00 0.75 0.29 1.02 0.00 0.54 1.05 0.43 0.61 0.40 0.00 0.40 1.66 0.92 0.39 0.14 0.33 0.39 0.25 0.00 0.41 0.25 0.00 0.14 0.00 0.96 0.55 0.34 0.00 1.02 0.00 0.38 0.80 0.70 0.00 1.09 0.00 0.34 0.00 0.38 K jcn_only_AA CG5360 chr2R + chr2R_19411660_19411871 chr2R_19411660_19411756 chr2R_19411476_19411659;chr2R_19411872_19411935 100.00 NA 95.00 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA 95.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 93.10 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K intron_retention sti,REI_chr3L_12506503_12506561 chr3L - chr3L_12507226_12507481 chr3L_12507225_12507226;chr3L_12507481_12507482 chr3L_12506981_12507225;chr3L_12507482_12507869 0.00 2.70 1.92 0.00 0.00 2.63 0.00 0.00 0.00 NA 0.00 1.20 4.26 0.00 0.00 3.12 0.00 0.00 0.00 2.11 3.33 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 NA 0.00 2.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 NA NA 0.00 0.00 0.00 5.88 0.00 0.00 NA 11.76 0.00 0.00 NA 0.00 K intron_retention br,I_chrX_1517022_1518170 chrX + chrX_1530583_1530671 chrX_1530582_1530583;chrX_1530671_1530672 chrX_1530129_1530582;chrX_1530672_1530945 0.00 0.00 0.00 0.00 0.00 0.00 9.09 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11376,I_chr2L_100704_100835 chr2L + chr2L_101620_101875 chr2L_101619_101620;chr2L_101875_101876 chr2L_101249_101619;chr2L_101876_101914 9.09 NA NA 6.25 NA NA 26.67 9.09 14.29 NA NA 6.25 NA NA NA 11.11 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 14.29 NA NA NA NA NA NA NA 17.65 NA NA NA 0.00 NA NA 11.11 NA NA NA NA NA NA NA 5.88 NA K intron_retention RpL27,I_chr3R_21510239_21510298,RI_chr3R_21510239_21510441,I_chr3R_21510239_21510464,I_chr3R_21510239_21510656,I_chr3R_21510239_21510726 chr3R - chr3R_21510239_21510746 chr3R_21510238_21510239;chr3R_21510746_21510747 chr3R_21510139_21510238;chr3R_21510747_21510756 2.40 NA 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 NA NA 0.00 13.33 0.00 0.00 0.00 2.94 0.00 0.00 NA 6.67 0.00 2.13 NA 26.09 17.39 11.76 3.12 0.00 0.00 3.57 NA NA 3.70 7.14 9.09 3.92 4.55 2.40 0.00 4.17 0.00 11.54 9.52 2.56 5.08 8.33 NA NA 3.12 NA 0.00 9.09 0.00 4.00 K intron_retention prominin-like,I_chr3L_3121200_3123087 chr3L - chr3L_3118980_3119042 chr3L_3118979_3118980;chr3L_3119042_3119043 chr3L_3118034_3118979;chr3L_3119043_3119152 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Dystrophin,noncoding_17759,I_chr3R_15289404_15290179 chr3R + chr3R_15289404_15290221;chr3R_15289437_15290221 chr3R_15289362_15290221 chr3R_15290222_15290279;chr3R_15289350_15289361 6.52 NA NA NA NA NA NA 4.35 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 17.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.70 NA NA NA NA NA NA NA NA NA K intron_retention R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083687_8089393 chr2L_8083686_8083687;chr2L_8089393_8089394 chr2L_8083422_8083686;chr2L_8089394_8089493 100.00 NA NA 93.33 NA NA 90.00 100.00 100.00 NA 90.91 100.00 90.00 NA NA 100.00 90.00 100.00 90.91 90.00 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 92.31 90.91 90.00 NA 100.00 93.33 87.50 100.00 87.50 NA NA 100.00 88.89 100.00 NA 100.00 NA NA NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA 100.00 N intron_retention PHGPx chr3L + chr3L_3326442_3327859 chr3L_3326441_3326442;chr3L_3327859_3327860 chr3L_3326438_3326441;chr3L_3327860_3328183 100.00 100.00 100.00 84.27 100.00 100.00 95.29 90.82 94.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.84 100.00 100.00 100.00 100.00 100.00 100.00 92.17 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.05 100.00 100.00 100.00 94.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.73 100.00 K alternative_acceptor par-6 chrX + chrX_17597401_17597580 chrX_17597401_17597461 chrX_17597362_17597400;chrX_17597581_17597758 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG7112 chr3L + chr3L_8342946_8342999 chr3L_8342945_8342946;chr3L_8342999_8343000 chr3L_8341849_8342945;chr3L_8343000_8343188 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 5.00 3.12 NA 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG7987,RI_chr3R_10400799_10401492 chr3R - chr3R_10400782_10401492 chr3R_10400781_10400782;chr3R_10401492_10401493 chr3R_10400699_10400781;chr3R_10401493_10401559 0.00 NA NA NA NA NA 0.00 0.00 0.00 NA NA 5.26 5.56 0.00 0.00 4.55 NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 0.00 NA 8.70 NA 0.00 NA NA NA 0.00 6.06 NA 0.00 NA NA NA 0.00 NA NA NA K cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2814894;chr2R_2813804_2817753;chr2R_2813804_2816013 chr2R_2813804_2814174;chr2R_2814327_2816013,chr2R_2814327_2814894,chr2R_2814327_2817753 chr2R_2814175_2814326 chr2R_2813704_2813803;chr2R_2817754_2817762 97.67 95.74 100.00 89.29 96.55 100.00 97.06 96.36 98.77 100.00 96.55 98.57 95.24 100.00 97.56 95.00 100.00 100.00 92.68 98.04 96.43 98.00 97.83 97.40 97.50 95.45 98.31 95.00 97.30 97.22 100.00 97.92 94.92 98.33 100.00 95.24 97.75 98.15 95.00 96.88 98.18 100.00 96.67 96.72 96.00 97.67 92.73 98.51 94.74 100.00 98.55 95.45 100.00 98.39 97.56 98.68 97.87 98.39 K intron_retention CG17508,RI_chr2R_1496995_1497120 chr2R + chr2R_1496303_1496517 chr2R_1496302_1496303;chr2R_1496517_1496518 chr2R_1496153_1496302;chr2R_1496518_1496994 0.00 0.00 1.06 0.00 0.00 0.00 1.01 0.68 2.88 0.00 0.00 0.00 0.00 0.00 1.03 0.56 3.92 0.00 0.00 0.00 3.57 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 1.57 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention moody chrX - chrX_1941681_1943228 chrX_1941680_1941681;chrX_1943228_1943229 chrX_1941591_1941680;chrX_1943229_1944157 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 2.78 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 12.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 K intron_retention Pax,RI_chr2L_19401373_19409403,RI_chr2L_19404683_19426205,RI_chr2L_19404823_19409403 chr2L - chr2L_19403717_19403998 chr2L_19403716_19403717;chr2L_19403998_19403999 chr2L_19403650_19403716;chr2L_19403999_19404682 52.83 52.83 64.10 40.74 67.74 57.58 56.36 78.57 65.93 34.38 72.00 45.78 86.21 65.85 53.06 63.04 60.00 50.00 74.29 26.92 50.00 56.32 36.11 50.00 20.37 12.50 53.45 65.79 14.04 51.02 59.57 47.37 38.46 64.71 55.88 57.58 54.17 37.78 40.58 53.73 8.51 59.26 72.73 42.50 15.38 44.00 33.33 37.78 62.96 46.15 60.94 51.72 33.33 32.14 73.17 32.14 53.57 41.67 K jcn_only_AD CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20824602_20825271;chr2L_20824725_20825271;chr2L_20824494_20825271 chr2L_20824631_20825271 chr2L_20825272_20825366;chr2L_20824482_20824493 48.28 NA NA NA NA NA 38.71 48.28 40.00 NA 34.62 NA NA NA NA 34.62 NA 54.17 NA 58.06 39.13 NA NA NA NA NA NA NA NA NA 47.62 64.29 61.36 NA NA NA NA NA NA 80.82 NA 18.52 NA NA 36.84 72.97 NA 82.54 40.91 NA NA NA NA NA 57.14 NA NA 94.44 K alternative_donor eIF5,noncoding_24049,EI_chrX_15885411_15885854,RI_chrX_15885416_15885611 chrX - chrX_15885416_15885611;chrX_15885416_15885925;chrX_15885416_15885783 chrX_15885416_15885854 chrX_15885316_15885415;chrX_15885926_15885954 87.50 100.00 84.62 82.14 NA 87.50 90.00 85.71 78.79 NA 83.33 85.71 66.67 100.00 100.00 90.24 100.00 80.00 90.91 92.86 100.00 NA NA 85.71 NA 100.00 NA NA NA NA 80.00 NA NA 95.24 100.00 100.00 NA NA NA 90.00 85.71 81.82 100.00 83.33 NA 90.91 NA 85.71 85.71 71.43 100.00 NA NA NA 87.50 NA 83.33 91.67 K intron_retention CG3680,Pka-R1 chr3L + chr3L_20805771_20805825 chr3L_20805770_20805771;chr3L_20805825_20805826 chr3L_20805624_20805770;chr3L_20805826_20806432 0.00 0.00 0.00 14.29 0.00 0.00 1.67 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.84 0.00 0.00 0.00 2.27 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Bmcp,RI_chr3L_11714462_11715104 chr3L + chr3L_11714292_11714416 chr3L_11714291_11714292;chr3L_11714416_11714417 chr3L_11714020_11714291;chr3L_11714417_11714461 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 4.35 1.56 0.00 0.00 0.00 3.57 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG12576,RI_chrX_21878289_21882347,I_chrX_21882735_21882809,I_chrX_21882735_21883407,I_chrX_21882735_21883467,I_chrX_21882735_21883620,I_chrX_21882735_21883714 chrX - chrX_21882735_21883714;chrX_21882735_21883467;chrX_21882735_21883750 chrX_21882735_21882809 chrX_21882635_21882734;chrX_21883751_21883814 1.67 3.17 2.00 1.83 0.00 2.17 2.78 1.54 1.84 2.56 1.69 2.13 1.67 1.61 1.69 1.10 1.54 0.00 1.39 1.16 0.00 2.13 1.20 0.00 0.00 1.96 3.77 5.56 1.33 1.35 1.56 2.04 1.63 1.83 0.00 1.79 1.49 2.38 0.00 2.38 2.00 1.98 1.96 1.19 0.00 1.19 1.69 0.81 1.59 2.56 1.54 2.17 0.00 3.12 2.78 0.00 2.13 0.77 K intron_retention Nopp140,I_chr3L_21828330_21828566,I_chr3L_21828986_21829082 chr3L + chr3L_21827177_21827368 chr3L_21827176_21827177;chr3L_21827368_21827369 chr3L_21826280_21827176;chr3L_21827369_21827458 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG11779,CG5835,I_chr3R_14982264_14982380,I_chr3R_14982295_14982380 chr3R - chr3R_14982125_14982187 chr3R_14982124_14982125;chr3R_14982187_14982188 chr3R_14981587_14982124;chr3R_14982188_14982263 47.06 40.48 37.50 68.29 45.16 45.83 55.26 50.00 51.72 58.62 66.67 52.27 64.29 47.83 52.38 39.13 47.37 46.88 68.18 51.90 62.07 56.00 43.84 38.60 71.79 67.65 60.34 31.37 69.64 32.93 45.00 30.30 28.57 53.06 47.37 48.21 50.82 50.00 47.06 33.78 57.45 48.57 41.94 42.59 40.91 53.06 39.66 41.56 40.58 33.33 36.99 44.44 37.25 33.33 50.00 43.59 28.57 27.06 K intron_retention CG9203 chrX - chrX_15369195_15369256 chrX_15369194_15369195;chrX_15369256_15369257 chrX_15369072_15369194;chrX_15369257_15369421 26.32 NA NA 60.00 NA NA 38.89 23.08 24.00 NA NA 26.32 NA NA NA NA NA NA NA 20.00 NA NA 50.00 13.33 NA NA NA 13.33 70.00 NA 42.86 NA 18.75 25.00 NA 26.67 42.86 NA NA 17.65 NA 27.27 NA NA NA NA 21.43 NA 25.00 38.46 33.33 NA NA NA NA NA NA NA K intron_retention Grip71 chr2L + chr2L_18709128_18709186 chr2L_18709127_18709128;chr2L_18709186_18709187 chr2L_18708849_18709127;chr2L_18709187_18709481 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 NA NA NA 13.04 NA NA NA NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 3.23 NA 0.00 0.00 NA NA NA 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K alternative_last_exon CG5028 chr3R + chr3R_21508154_21509194 chr3R_21508154_21508779 chr3R_21509195_21509500 chr3R_21508780_21509158 chr3R_21508078_21508153 100.00 100.00 100.00 98.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 98.51 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 95.24 100.00 98.33 96.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 97.62 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.37 K intron_retention Hmu chr3R + chr3R_23114768_23114836 chr3R_23114767_23114768;chr3R_23114836_23114837 chr3R_23114443_23114767;chr3R_23114837_23115042 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.86 0.00 0.00 0.00 1.01 2.04 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Sr-CI chr2L + chr2L_4122584_4122708 chr2L_4122583_4122584;chr2L_4122708_4122709 chr2L_4122046_4122583;chr2L_4122709_4123478 1.01 0.65 0.46 1.31 0.48 1.78 1.04 2.02 1.10 3.51 0.76 1.14 1.38 1.18 2.49 0.72 1.41 0.71 0.91 0.84 0.00 1.19 1.55 1.16 0.47 0.36 2.69 1.17 0.76 0.44 1.05 0.00 0.00 1.01 0.53 0.62 0.85 1.02 1.15 1.16 0.99 0.99 1.39 0.00 0.00 1.55 1.10 1.53 0.92 1.32 1.45 0.45 0.00 0.00 0.98 1.15 1.04 1.01 K intron_retention trbd chr3R - chr3R_5532763_5532828 chr3R_5532762_5532763;chr3R_5532828_5532829 chr3R_5532614_5532762;chr3R_5532829_5533040 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention kuz,E_chr2L_13550294_13551106,CE_chr2L_13558833_13594255,F_chr2L_13635998_13637287,RI_chr2L_13636519_13636577,I_chr2L_13636762_13637287 chr2L + chr2L_13636214_13637287 chr2L_13636213_13636214;chr2L_13637287_13637288 chr2L_13636100_13636213;chr2L_13637288_13637387 34.66 30.77 60.00 40.00 NA 20.00 27.78 50.00 37.50 NA 14.29 72.73 NA NA 33.33 75.00 16.67 NA 33.33 72.73 23.53 31.91 28.57 36.00 42.86 NA 56.25 46.15 NA 88.24 NA NA 47.83 31.25 38.46 NA 28.57 27.78 31.82 NA NA 26.92 NA NA NA NA NA 70.00 24.14 36.36 33.33 NA NA NA 54.55 25.00 NA 66.67 K intron_retention CG34394,I_chr2L_3365674_3365965 chr2L - chr2L_3361444_3362442 chr2L_3361443_3361444;chr2L_3362442_3362443 chr2L_3360996_3361443;chr2L_3362443_3362718 93.75 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA 68.57 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG42360,RI_chr2R_20495045_20495115,RI_chr2R_20497443_20497538 chr2R + chr2R_20496560_20496621 chr2R_20496560_20496612 chr2R_20496458_20496559;chr2R_20496622_20496816 100.00 NA NA 100.00 NA NA 100.00 87.50 90.91 NA NA 100.00 100.00 NA NA 100.00 NA NA 88.89 NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 91.67 NA 87.50 NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 N cassette CG13900,I_chr3L_830745_830907 chr3L - chr3L_827002_827422 chr3L_827002_827181;chr3L_827237_827422 chr3L_827182_827236 chr3L_826946_827001;chr3L_827423_827469 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 82.29 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG8446 chr2R + chr2R_12084108_12084196 chr2R_12084107_12084108;chr2R_12084196_12084197 chr2R_12083895_12084107;chr2R_12084197_12084416 0.00 0.00 0.00 6.98 0.00 0.00 4.35 6.25 5.10 0.00 0.00 4.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 3.08 0.00 NA 1.75 0.00 0.00 8.11 22.22 21.43 5.88 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.41 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 4.76 0.00 0.00 0.00 1.32 0.00 K alternative_acceptor Gpo-1,I_chr2R_11747621_11747699,EI_chr2R_11747445_11747699,I_chr2R_11749758_11750187,I_chr2R_11756325_11756380 chr2R - chr2R_11748259_11750187;chr2R_11749758_11750187 chr2R_11748228_11750187 chr2R_11750188_11750219;chr2R_11748106_11748227 2.63 0.00 6.25 0.00 NA 7.14 8.57 0.00 0.00 5.56 0.00 2.63 7.14 7.69 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 2.38 4.88 2.86 0.00 2.70 0.00 4.00 0.00 4.76 4.35 4.35 0.00 0.00 0.00 3.33 6.25 2.86 0.00 3.45 4.17 0.00 2.38 3.12 2.63 2.63 0.00 0.00 6.67 2.99 3.23 7.14 0.00 6.25 3.85 0.00 6.67 K intron_retention Ncc69,I_chr3L_12364701_12364860 chr3L - chr3L_12366180_12366239 chr3L_12366179_12366180;chr3L_12366239_12366240 chr3L_12366070_12366179;chr3L_12366240_12366382 0.00 0.00 0.00 0.00 0.00 0.00 NA 5.00 3.92 21.43 NA 2.94 NA 0.00 0.00 0.00 0.00 0.00 3.03 1.92 0.00 NA 0.00 2.27 11.76 7.69 2.70 NA 7.69 4.00 4.35 0.00 0.00 2.27 0.00 13.04 0.00 0.00 4.17 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 3.45 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG6236 chr3R - chr3R_11153785_11153876 chr3R_11153813_11153876 chr3R_11153877_11153988;chr3R_11153649_11153784 1.35 0.00 0.00 1.92 NA 0.00 2.44 1.49 2.22 5.00 NA 0.00 NA NA 4.17 5.17 NA NA NA 1.87 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.74 3.12 0.00 4.65 1.69 1.35 1.72 3.12 1.64 0.00 NA 2.04 5.45 0.00 0.00 2.48 1.45 3.70 2.90 3.33 2.33 0.00 0.00 0.00 0.00 5.38 K alternative_donor Ptp10D,CEF_chrX_11516219_11517862,I_chrX_11516225_11516345 chrX + chrX_11516219_11517785;chrX_11516213_11517785;chrX_11516391_11517785 chrX_11516225_11517785 chrX_11517786_11518234;chrX_11516125_11516212 0.00 NA 0.00 0.00 NA 16.67 0.00 13.33 0.00 NA 0.00 10.00 14.29 14.29 14.29 0.00 0.00 40.00 12.50 0.00 NA NA 12.50 NA NA 20.00 NA NA NA NA 0.00 NA 11.11 0.00 16.67 NA NA NA NA NA NA 7.69 0.00 0.00 NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 25.00 K alternative_acceptor kat-60L1,I_chr3R_1609253_1609777 chr3R + chr3R_1611104_1611163 chr3R_1611104_1611151 chr3R_1610912_1611103;chr3R_1611164_1611351 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention spz chr3R - chr3R_22892388_22894865 chr3R_22892387_22892388;chr3R_22894865_22894866 chr3R_22892330_22892387;chr3R_22894866_22895053 26.75 26.67 27.14 19.18 22.58 27.38 39.09 25.00 33.05 20.55 48.84 45.29 43.48 25.27 35.71 29.51 25.93 18.46 35.23 25.17 35.29 32.18 26.75 22.97 32.95 55.26 24.32 16.67 25.00 25.00 30.34 21.95 26.19 32.19 38.89 58.23 26.77 26.32 32.17 34.35 37.29 30.09 26.25 45.30 14.46 23.85 20.39 25.19 31.96 20.18 28.44 32.50 21.31 25.26 35.09 26.55 15.46 17.32 K jcn_only_AA Fibp,RI_chr3L_19810268_19810326 chr3L - chr3L_19809780_19809819;chr3L_19809775_19809819 chr3L_19809762_19809819 chr3L_19809820_19809920;chr3L_19809693_19809761 96.43 96.43 92.00 94.64 100.00 100.00 96.88 100.00 95.45 NA 95.65 97.44 NA 96.00 88.89 100.00 95.45 95.24 100.00 92.86 NA 100.00 93.10 97.37 NA 100.00 97.30 NA 100.00 NA 92.11 96.15 96.88 97.14 NA 100.00 96.55 100.00 95.35 91.89 NA 94.00 NA 90.91 95.65 100.00 100.00 92.68 100.00 100.00 94.12 95.00 NA 100.00 92.86 95.12 96.23 100.00 K intron_retention Moe,I_chrX_8774434_8775874,I_chrX_8774434_8791759 chrX - chrX_8774434_8792216 chrX_8774433_8774434;chrX_8792216_8792217 chrX_8774334_8774433;chrX_8792217_8792259 25.00 12.50 21.74 10.53 16.67 23.53 17.86 29.73 17.54 NA NA 29.55 23.08 26.09 31.58 26.32 23.53 20.00 30.00 34.88 NA NA 5.88 30.77 NA 19.05 38.46 30.77 NA 36.36 26.09 NA 38.46 33.33 NA 25.00 NA NA 14.29 24.00 NA 22.58 31.82 22.73 NA NA 13.33 57.14 33.33 NA 21.05 NA NA NA 30.00 NA NA NA K alternative_donor fz2 chr3L - chr3L_19153786_19163552;chr3L_19153786_19162943 chr3L_19153786_19163618 chr3L_19153719_19153785;chr3L_19163619_19163743 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Hsc70-3,I_chrX_11699076_11699138,I_chrX_11699076_11699158,I_chrX_11699076_11699260,EI_chrX_11699076_11699573,I_chrX_11699076_11700062 chrX - chrX_11699076_11699321 chrX_11699075_11699076;chrX_11699321_11699322 chrX_11698976_11699075;chrX_11699322_11699360 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.97 0.00 2.22 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 5.00 0.00 2.60 0.00 0.00 7.94 26.83 7.27 4.65 0.00 0.00 0.00 1.27 2.86 0.00 3.45 0.00 0.00 2.38 0.00 2.50 0.00 2.08 0.00 2.15 4.00 0.00 0.81 0.00 1.79 0.00 0.00 0.00 1.72 0.00 0.00 1.72 K intron_retention CG18604,I_chr2R_14589693_14590032 chr2R + chr2R_14589693_14590023 chr2R_14589692_14589693;chr2R_14590023_14590024 chr2R_14589593_14589692;chr2R_14590024_14590188 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 7.69 0.00 0.00 0.00 4.35 NA 2.63 NA 0.00 0.00 6.90 4.76 NA 0.00 10.53 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 8.57 0.00 0.00 13.04 NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 3.85 2.78 NA 0.00 NA 0.00 5.88 0.00 NA K intron_retention AT25722,CG3376 chr2R + chr2R_20145999_20149448 chr2R_20145998_20145999;chr2R_20149448_20149449 chr2R_20145537_20145998;chr2R_20149449_20149631 2.74 1.83 3.79 3.80 1.37 1.48 4.23 4.36 3.21 0.00 0.88 4.44 4.39 4.49 2.23 3.17 5.45 5.56 1.64 2.61 0.98 12.68 4.38 2.99 0.00 3.14 4.11 0.00 4.29 2.74 1.09 3.39 2.33 2.74 1.83 1.01 2.44 3.96 3.10 3.97 2.60 3.02 3.10 7.83 0.00 3.38 0.76 5.63 1.97 0.00 4.49 2.60 1.94 0.00 1.67 1.71 0.00 4.23 K intron_retention GlcAT-P,I_chr3L_11172482_11172633 chr3L - chr3L_11172039_11172323 chr3L_11172038_11172039;chr3L_11172323_11172324 chr3L_11171748_11172038;chr3L_11172324_11172481 1.06 0.92 2.21 0.00 0.91 1.50 1.75 1.29 0.50 0.00 0.00 1.14 1.72 2.06 0.00 1.29 0.00 2.40 0.00 1.76 1.77 2.20 0.86 0.00 1.30 0.00 3.54 2.82 0.00 2.33 1.75 0.00 1.03 1.40 0.00 2.06 1.09 0.00 1.84 0.63 0.00 1.69 1.06 2.56 0.00 1.15 1.72 0.00 1.95 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 2.65 K intron_retention RpS28b,I_chrX_9448962_9449029 chrX + chrX_9448962_9449028 chrX_9448961_9448962;chrX_9449028_9449029 chrX_9448862_9448961;chrX_9449029_9449632 0.04 0.09 0.00 0.06 0.06 0.07 0.07 0.05 0.00 0.06 0.00 0.04 0.04 0.00 0.02 0.04 0.00 0.00 0.04 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.14 0.35 0.98 0.04 0.04 0.00 0.06 0.01 0.08 0.00 0.04 0.00 0.00 0.02 0.02 0.06 0.05 0.00 0.00 0.03 0.03 0.04 0.15 0.03 0.00 0.08 0.06 0.00 0.02 0.05 0.09 0.04 K intron_retention Sep1 chrX + chrX_21231057_21231182 chrX_21231056_21231057;chrX_21231182_21231183 chrX_21230798_21231056;chrX_21231183_21231548 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG42507,Trl,EI_chr3L_14750431_14750893,I_chr3L_14750431_14750985,CI_chr3L_14750431_14753667,I_chr3L_14754175_14754238 chr3L - chr3L_14750431_14750762;chr3L_14750431_14751007;chr3L_14750431_14750893;chr3L_14750431_14750583 chr3L_14750431_14750941 chr3L_14750331_14750430;chr3L_14751008_14751008 66.67 80.00 66.67 64.52 60.00 60.00 59.09 48.72 65.96 81.82 64.71 63.64 52.00 61.11 64.00 73.17 68.42 62.96 57.14 72.73 53.57 70.00 78.26 77.27 84.62 61.90 76.47 42.86 57.69 75.00 80.95 56.25 66.67 60.53 82.35 68.42 87.50 85.71 92.86 64.29 60.00 68.29 47.62 62.50 61.90 62.86 84.62 59.65 63.83 78.95 78.57 78.95 76.47 85.71 70.37 72.22 86.67 70.73 K intron_retention Cf2,I_chr2L_4882802_4882864 chr2L - chr2L_4882493_4882864 chr2L_4882492_4882493;chr2L_4882864_4882865 chr2L_4882368_4882492;chr2L_4882865_4882964 23.21 NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA 41.18 33.33 NA NA NA NA NA 13.33 NA NA NA 33.33 NA NA NA NA NA NA 21.05 NA 21.43 NA NA NA NA NA 13.33 NA NA NA NA NA NA NA NA NA NA K intron_retention CG3437,CG3434 chr3L - chr3L_9449781_9449865 chr3L_9449780_9449781;chr3L_9449865_9449866 chr3L_9449479_9449780;chr3L_9449866_9450402 33.33 41.67 33.33 18.75 NA 25.00 45.00 33.33 25.81 NA 46.67 41.18 NA NA 40.00 43.75 NA NA NA 37.93 31.25 NA 17.65 7.69 NA NA NA NA NA 30.77 NA NA 43.75 37.50 NA 25.00 18.75 NA 13.33 42.86 NA 31.58 NA 23.53 46.15 35.71 NA 27.27 56.25 NA NA NA NA NA NA NA 30.77 47.06 K cassette CG17528,RI_chr2R_706735_711409,I_chr2R_706735_711443,I_chr2R_707374_711443 chr2R - chr2R_706735_711443;chr2R_706735_711409;chr2R_706735_711615 chr2R_706735_706792;chr2R_707442_711409,chr2R_707442_711615,chr2R_707442_711443 chr2R_706793_707441 chr2R_706635_706734;chr2R_711616_711627 100.00 98.15 96.72 88.06 100.00 100.00 99.03 99.09 100.00 100.00 98.04 100.00 98.33 98.33 98.44 97.94 100.00 100.00 100.00 99.26 97.87 100.00 100.00 98.51 100.00 100.00 98.55 96.43 100.00 100.00 98.53 100.00 100.00 99.17 97.62 97.87 98.18 100.00 100.00 98.82 100.00 99.18 100.00 100.00 96.67 100.00 100.00 98.55 100.00 97.50 100.00 100.00 100.00 100.00 100.00 97.44 97.67 100.00 K alternative_acceptor l(2)03709,I_chr2R_14707617_14707700,I_chr2R_14708048_14708095 chr2R + chr2R_14708789_14708997 chr2R_14708789_14708994 chr2R_14708689_14708788;chr2R_14708998_14709059 97.44 100.00 98.04 98.92 100.00 92.31 99.20 97.47 98.68 100.00 100.00 97.50 96.43 97.92 100.00 93.62 100.00 100.00 97.92 99.02 97.06 94.12 95.95 95.77 97.96 96.67 95.51 97.44 97.50 92.68 96.30 100.00 100.00 100.00 97.67 91.23 91.67 95.35 92.50 97.80 96.67 98.44 100.00 92.98 81.58 96.00 95.83 96.15 96.36 96.72 96.92 94.74 97.56 94.44 94.87 98.00 95.83 100.00 K intron_retention Pect,I_chr2L_13207997_13208109,E_chr2L_13208285_13210076 chr2L + chr2L_13209360_13209471 chr2L_13209359_13209360;chr2L_13209471_13209472 chr2L_13209266_13209359;chr2L_13209472_13209485 91.67 89.47 94.44 98.36 100.00 94.44 100.00 94.87 93.33 NA 94.12 90.91 80.00 87.50 95.00 89.74 91.67 100.00 86.21 92.11 87.50 91.67 81.48 94.44 92.31 95.65 84.00 80.95 87.50 90.91 88.46 NA 91.67 97.06 77.78 NA 84.62 88.89 77.78 82.61 92.86 89.47 95.00 94.74 90.00 93.33 93.33 88.89 95.35 90.00 82.76 87.50 NA 90.00 92.31 86.67 93.33 100.00 K jcn_only_AD sec23,I_chr3R_1474873_1475080,I_chr3R_1477727_1478102 chr3R + chr3R_1477525_1478102 chr3R_1477724_1478102 chr3R_1478103_1478202 4.82 6.93 4.23 4.41 11.17 4.76 2.61 4.11 4.34 3.23 3.51 13.78 23.28 5.65 3.80 2.64 4.47 13.04 7.60 6.17 3.68 21.11 4.34 7.49 10.20 2.94 6.19 8.73 3.81 4.97 4.63 6.49 7.05 2.29 7.69 2.14 6.57 4.82 8.08 0.85 7.89 3.82 2.42 2.66 5.08 6.23 5.58 1.10 3.64 10.35 3.75 7.08 3.02 5.17 2.74 5.34 4.99 3.25 K intron_retention CG31158,CG31159 chr3R + chr3R_18414141_18424940 chr3R_18414140_18414141;chr3R_18424940_18424941 chr3R_18413477_18414140;chr3R_18424941_18425007 0.00 0.00 0.00 0.00 NA 0.00 5.56 0.00 0.00 0.00 0.00 8.33 NA 12.50 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 4.55 0.00 0.00 NA 0.00 0.00 0.00 6.67 0.00 NA 4.65 0.00 7.41 4.00 0.00 0.00 4.44 0.00 11.76 0.00 NA 0.00 0.00 0.00 0.00 5.26 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA alpha-Cat,I_chr3L_23319861_23321813,I_chr3L_23327841_23328002 chr3L - chr3L_23312573_23318741 chr3L_23312575_23318741 chr3L_23318742_23318923;chr3L_23312334_23312572 100.00 98.11 96.30 98.44 100.00 100.00 96.90 98.50 99.22 100.00 100.00 100.00 96.43 100.00 100.00 99.37 100.00 100.00 97.12 97.30 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 96.55 100.00 100.00 100.00 100.00 98.48 98.00 100.00 100.00 NA NA 100.00 98.11 99.08 98.82 97.96 100.00 98.70 100.00 95.52 97.44 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 97.14 K jcn_only_AA CG8043,CG11755 chr3R + chr3R_4502770_4502817;chr3R_4502770_4502834;chr3R_4502770_4502843 chr3R_4502770_4502810 chr3R_4502645_4502769;chr3R_4502844_4503955 0.00 NA 0.00 3.45 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA 0.00 NA NA NA 0.00 0.00 0.00 0.00 N jcn_only_AD CG5646,I_chr3R_23386287_23386484 chr3R - chr3R_23385937_23386017 chr3R_23385937_23385995 chr3R_23385868_23385936;chr3R_23386018_23386080 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 89.74 100.00 100.00 100.00 NA 100.00 100.00 100.00 K alternative_acceptor Rpb4 chr3R - chr3R_14080914_14081038;chr3R_14080814_14081038 chr3R_14080959_14081038 chr3R_14081039_14081173;chr3R_14080097_14080813 11.11 12.50 9.09 18.18 20.00 0.00 0.00 11.11 21.43 NA 14.29 14.29 16.67 0.00 16.67 10.00 14.29 12.50 18.18 5.26 11.11 0.00 0.00 9.09 0.00 28.57 18.18 16.67 NA 0.00 13.04 0.00 14.29 0.00 14.29 20.00 9.09 12.50 15.38 13.33 NA 6.25 NA 0.00 0.00 0.00 12.50 10.00 11.11 10.00 6.67 11.11 0.00 9.09 18.18 0.00 0.00 12.50 K intron_retention Met chrX + chrX_11510403_11510756 chrX_11510402_11510403;chrX_11510756_11510757 chrX_11510159_11510402;chrX_11510757_11512193 95.84 NA NA NA NA NA 100.00 91.67 100.00 NA NA NA NA NA NA 91.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 80.00 88.89 NA NA NA NA NA NA NA NA NA K intron_retention drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9384657_9384872 chr2R_9384656_9384657;chr2R_9384872_9384873 chr2R_9382757_9384656;chr2R_9384873_9385038 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.52 0.46 0.81 0.59 0.53 0.61 0.00 0.58 0.00 0.00 1.77 0.00 2.87 2.38 1.81 1.28 0.00 0.84 1.47 0.43 1.28 1.16 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.90 0.00 2.03 0.90 0.63 0.00 0.00 0.00 1.30 0.91 1.32 0.00 1.63 N alternative_acceptor CG6664 chr3L - chr3L_17007987_17008086 chr3L_17008005_17008086 chr3L_17008087_17008177;chr3L_17007093_17007986 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 72.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG3608 chr2R + chr2R_20500970_20501030 chr2R_20500969_20500970;chr2R_20501030_20501031 chr2R_20500901_20500969;chr2R_20501031_20501099 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.70 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 2.56 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 K cassette I_chr3L_1494947_1496080,pUf68,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345 chr3L - chr3L_1499338_1501350;chr3L_1499880_1501350;chr3L_1499880_1501798;chr3L_1499338_1501798;chr3L_1499338_1501345 chr3L_1499338_1500244,chr3L_1499880_1500244;chr3L_1500389_1501350,chr3L_1500389_1501798,chr3L_1500389_1501345 chr3L_1500245_1500388 chr3L_1499043_1499337;chr3L_1501799_1501892 14.00 8.11 12.28 23.38 6.00 10.00 0.00 22.50 13.86 19.15 29.73 23.36 42.31 12.90 10.84 13.51 9.43 8.33 10.67 15.53 17.50 19.35 17.81 16.39 19.15 9.76 17.91 20.69 11.76 14.00 24.74 9.43 17.02 12.00 16.39 27.91 11.11 9.52 14.67 10.00 17.31 11.71 8.93 23.88 15.87 13.92 15.52 10.28 10.62 12.68 14.63 15.52 6.52 18.42 14.29 17.39 12.50 10.67 K jcn_only_AD CG7458 chr3L + chr3L_21948960_21949479 chr3L_21948986_21949479 chr3L_21949480_21949583;chr3L_21948713_21948959 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 K intron_retention Su(dx),RE_chr2L_2038009_2039919,CG31672 chr2L + chr2L_2041574_2041646 chr2L_2041573_2041574;chr2L_2041646_2041647 chr2L_2040422_2041573;chr2L_2041647_2042569 0.00 0.00 0.00 5.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD arr,I_chr2R_9343426_9343486,I_chr2R_9347031_9370659 chr2R - chr2R_9369590_9370659 chr2R_9369590_9370634 chr2R_9369281_9369589;chr2R_9370660_9370692 4.55 NA NA NA NA NA NA NA 4.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention didum,I_chr2R_3393005_3393348 chr2R + chr2R_3390534_3391153 chr2R_3390533_3390534;chr2R_3391153_3391154 chr2R_3390307_3390533;chr2R_3391154_3391267 7.18 12.50 18.75 NA 5.00 6.25 9.09 26.67 11.11 NA 0.00 10.00 NA NA 12.50 15.38 NA 0.00 NA 8.33 NA NA 0.00 13.04 NA NA 5.56 NA 11.76 18.75 0.00 NA 0.00 0.00 NA NA 0.00 0.00 6.67 10.34 NA 7.69 NA NA NA NA NA NA 5.00 NA 0.00 NA NA NA NA NA NA NA K jcn_only_AA Mocs1 chr3L + chr3L_11065511_11065569;chr3L_11065511_11065549 chr3L_11065511_11065661 chr3L_11064659_11065510;chr3L_11065662_11066454 28.75 37.50 27.59 24.44 NA 22.58 20.37 33.33 26.98 36.11 38.10 23.91 40.00 NA 28.12 14.63 10.00 13.79 25.71 34.62 55.00 32.58 32.65 37.14 20.00 29.41 40.35 33.33 38.46 17.54 33.33 24.29 11.11 21.62 36.00 45.45 20.51 36.11 35.29 27.27 28.92 23.53 NA 20.29 30.43 37.10 32.00 27.27 34.04 25.00 31.48 23.08 NA NA 27.59 24.14 36.59 28.57 K jcn_only_AA Lasp,I_chr3L_16671761_16673911,I_chr3L_16671780_16671907,RI_chr3L_16674471_16704042 chr3L - chr3L_16671761_16671907 chr3L_16671780_16671907 chr3L_16671908_16672007;chr3L_16671680_16671760 0.00 0.36 0.00 0.37 0.00 0.52 0.00 0.36 0.00 0.47 0.00 0.00 0.00 0.70 0.00 0.46 0.66 0.00 0.00 0.00 0.00 0.00 0.18 0.25 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 K alternative_donor CG33090,CEI_chr2L_14342636_14342777 chr2L + chr2L_14341577_14342777 chr2L_14342636_14342777 chr2L_14342778_14342877;chr2L_14341307_14341576 6.25 11.11 5.56 10.00 6.67 6.25 19.05 15.00 8.82 6.25 6.67 13.79 11.11 20.00 7.41 12.00 7.14 5.56 12.50 8.33 6.67 4.55 5.26 4.55 5.88 4.76 3.57 5.26 0.00 3.85 11.11 0.00 2.00 14.29 5.88 4.55 3.23 4.35 2.94 6.45 6.67 7.89 18.18 4.76 0.00 5.88 5.56 3.45 7.89 7.69 6.25 13.33 7.69 5.88 6.67 4.76 6.25 0.00 K intron_retention lig,CI_chr2R_3962006_3962916,I_chr2R_3962357_3962977,RI_chr2R_3962875_3962977 chr2R + chr2R_3962006_3962977 chr2R_3962005_3962006;chr2R_3962977_3962978 chr2R_3961906_3962005;chr2R_3962978_3963016 0.28 0.00 0.89 1.53 1.01 0.55 1.39 0.58 0.55 0.00 0.00 0.00 0.00 0.58 0.00 0.72 0.00 0.00 0.87 0.20 0.46 0.80 1.09 0.00 0.64 0.00 0.00 1.80 0.00 1.15 0.00 0.00 0.43 0.00 0.52 0.00 0.64 0.00 0.28 0.00 0.00 0.44 0.67 0.98 0.00 0.00 0.00 0.00 0.85 0.00 0.94 0.00 0.69 0.00 0.74 0.45 0.00 0.88 K intron_retention l(2)35Bg chr2L - chr2L_15038551_15038639 chr2L_15038550_15038551;chr2L_15038639_15038640 chr2L_15038054_15038550;chr2L_15038640_15038840 0.55 2.33 1.23 1.46 0.00 2.15 2.82 2.26 1.20 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 1.35 0.00 0.54 0.00 2.05 0.00 0.00 1.01 0.00 2.41 4.05 0.00 0.00 0.00 1.94 0.00 1.83 0.00 0.87 0.00 0.83 0.00 0.97 2.68 0.55 0.00 0.00 0.00 0.61 1.00 0.00 1.91 0.73 0.59 0.99 0.00 1.14 0.00 0.85 0.87 0.00 K jcn_only_AD CG3631 chr3R + chr3R_10705805_10705885;chr3R_10705766_10705885 chr3R_10705801_10705885 chr3R_10705886_10706516;chr3R_10705554_10705765 36.36 NA NA NA NA NA 36.36 NA 36.36 NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA K cassette CaMKI,I_chr4_467862_471815,I_chr4_471136_473243,I_chr4_472116_472527,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_471136_473243 chr4_471136_471815;chr4_472116_473243 chr4_471816_472115 chr4_471036_471135;chr4_473244_473337 100.00 95.45 96.55 85.37 93.33 100.00 100.00 98.15 100.00 100.00 100.00 97.30 100.00 96.15 100.00 97.62 100.00 95.65 100.00 100.00 100.00 94.12 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 93.33 98.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 97.83 100.00 93.75 100.00 100.00 100.00 100.00 98.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG11009,I_chr3L_12844823_12845526,I_chr3L_12845441_12845526 chr3L + chr3L_12845378_12845529 chr3L_12845378_12845526 chr3L_12845344_12845377;chr3L_12845530_12845621 96.00 95.12 95.08 94.92 97.14 91.84 95.24 95.12 95.73 NA 98.08 95.35 94.95 97.14 95.92 94.74 95.52 95.45 97.92 99.06 85.00 96.05 100.00 96.43 97.30 96.55 96.61 87.88 100.00 100.00 94.21 97.30 92.71 95.24 90.91 93.22 96.88 97.06 92.86 98.10 96.03 97.44 96.77 95.77 99.21 96.00 96.67 97.70 92.94 96.09 95.45 94.12 NA 93.55 100.00 85.48 98.48 98.84 K intron_retention CG5118 chr2L - chr2L_1171644_1171713 chr2L_1171643_1171644;chr2L_1171713_1171714 chr2L_1171030_1171643;chr2L_1171714_1171913 6.99 7.55 6.00 8.22 4.35 4.44 12.50 3.33 6.99 7.41 5.56 7.46 6.90 7.32 6.35 8.70 8.70 11.11 8.62 9.09 7.50 0.00 6.85 9.26 11.11 4.44 9.21 8.70 4.35 0.00 18.31 0.00 6.25 8.24 5.00 4.35 5.00 6.25 6.67 6.06 8.82 9.28 10.64 6.06 2.63 7.41 7.69 2.13 8.99 9.52 9.86 11.76 0.00 1.75 5.63 10.34 6.33 3.17 K alternative_donor CG9766 chr3R - chr3R_96077_103350 chr3R_96077_103167 chr3R_95831_96076;chr3R_103351_103355 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K mutually_exclusive trx chr3R - chr3R_10101091_10104814,chr3R_10105264_10111930 chr3R_10101091_10102027,chr3R_10103265_10111930 chr3R_10104815_10105263 chr3R_10102028_10103264 chr3R_10099914_10101090;chr3R_10111931_10112601 33.33 50.00 63.64 33.33 25.00 25.00 30.77 12.50 28.57 40.00 33.33 28.57 50.00 50.00 50.00 33.33 50.00 22.22 25.00 50.00 42.86 12.82 50.00 66.67 40.00 25.00 33.33 20.00 25.00 33.33 40.00 25.00 33.33 20.00 28.57 40.00 17.65 50.00 44.44 14.29 50.00 66.67 40.00 16.67 25.00 33.33 50.00 25.00 50.00 25.00 22.22 50.00 50.00 50.00 50.00 50.00 50.00 25.00 K jcn_only_AA Su(var)2-10,RI_chr2R_5006333_5006392 chr2R + chr2R_5006553_5008568;chr2R_5006553_5008282;chr2R_5006553_5008598 chr2R_5006553_5007804 chr2R_5006405_5006552;chr2R_5008599_5008637 27.27 NA NA NA NA NA NA NA 9.52 NA NA 71.83 NA NA NA NA NA NA NA 12.50 NA NA 23.33 39.13 28.00 NA NA NA NA NA NA NA 23.81 NA NA NA 25.81 28.12 42.86 16.67 NA 27.27 NA 50.00 36.36 NA NA NA NA NA 17.39 NA NA NA NA 28.57 13.64 NA K intron_retention caz,noncoding_24110,RI_chrX_16183147_16183258,RI_chrX_16183356_16185973 chrX + chrX_16183356_16185089 chrX_16183355_16183356;chrX_16185089_16185090 chrX_16183259_16183355;chrX_16185090_16185124 5.59 7.23 10.87 6.48 7.41 2.99 16.67 13.43 13.27 2.86 16.13 10.17 19.23 15.56 3.85 16.28 8.93 6.74 12.24 6.56 4.55 5.59 5.00 4.23 5.71 8.51 7.41 4.58 4.95 3.90 8.33 1.88 2.50 13.04 2.80 3.88 2.55 3.70 2.22 3.88 3.12 5.26 4.26 6.25 0.49 7.41 4.17 6.32 11.11 1.12 3.33 6.90 3.96 4.29 8.22 3.90 6.90 4.42 K alternative_acceptor CG7995,EF_chr3L_1739282_1743211 chr3L + chr3L_1738745_1743211 chr3L_1738745_1743207 chr3L_1738599_1738744;chr3L_1743212_1743311 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA 100.00 NA 90.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA 100.00 K jcn_only_AD I_chrX_7993650_7995126,Gclc chrX - chrX_8009614_8010024 chrX_8009614_8009706 chrX_8009450_8009613;chrX_8010025_8010150 2.34 2.75 6.25 3.57 5.17 5.88 3.05 2.34 3.39 0.00 5.45 5.82 3.66 0.93 4.65 1.82 4.21 1.69 0.94 3.33 3.23 0.24 2.15 0.60 1.63 3.85 2.36 3.17 1.85 1.08 2.31 1.23 1.61 3.66 0.67 2.07 0.64 0.52 3.39 2.19 0.00 5.03 4.11 0.36 7.41 2.50 2.68 0.83 5.48 4.07 1.96 5.07 4.17 1.39 2.27 2.02 0.74 1.85 K alternative_last_exon Pde1c,I_chr2L_11838774_11925541 chr2L - chr2L_11816707_11817352 chr2L_11817110_11817352 chr2L_11814144_11816706 chr2L_11816793_11817109 chr2L_11817353_11818493 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.00 0.00 0.00 0.00 0.00 0.00 50.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG17598 chrX - chrX_21938828_21939091 chrX_21938831_21939091 chrX_21939092_21940557;chrX_21938690_21938827 97.87 100.00 100.00 98.63 95.92 97.44 100.00 98.17 97.22 95.95 100.00 97.44 93.44 100.00 95.77 98.48 97.83 98.33 97.87 98.70 98.08 100.00 97.53 97.94 97.14 100.00 96.34 91.55 98.82 98.81 96.43 97.03 97.87 98.63 97.18 100.00 100.00 97.53 96.64 97.64 96.55 93.94 93.33 96.47 100.00 98.65 100.00 96.97 96.04 98.51 97.96 100.00 96.88 98.86 100.00 99.19 97.41 96.12 K alternative_donor CG8468 chr2R + chr2R_10107616_10108112;chr2R_10107548_10108112;chr2R_10107621_10108112 chr2R_10107651_10108112 chr2R_10108113_10108270;chr2R_10107405_10107547 9.41 9.52 8.28 10.63 12.36 10.14 16.44 10.58 10.20 8.33 14.78 8.13 10.74 12.34 8.63 15.15 11.28 10.79 12.15 17.05 9.09 5.97 6.00 9.45 17.81 15.08 13.51 8.43 6.25 1.95 10.16 3.47 3.09 9.41 12.08 12.61 11.65 6.14 12.73 6.86 6.72 8.60 14.96 7.18 5.19 9.59 6.34 4.55 8.65 6.58 8.72 14.08 6.82 7.41 12.50 7.63 5.68 5.78 K intron_retention Csp,RI_chr3L_22262215_22262452,I_chr3L_22264863_22266536,I_chr3L_22273037_22275661 chr3L + chr3L_22263021_22264013 chr3L_22263020_22263021;chr3L_22264013_22264014 chr3L_22262889_22263020;chr3L_22264014_22264076 11.49 12.99 5.26 13.79 21.74 13.95 17.44 8.82 11.32 15.25 14.04 15.45 13.89 13.64 12.86 7.69 10.87 16.95 13.73 8.33 6.56 8.84 8.70 10.19 8.93 6.56 12.90 16.67 11.46 11.22 7.84 20.63 15.27 7.37 8.97 4.94 6.52 8.33 11.19 10.16 15.29 10.79 15.79 8.33 15.29 10.75 11.49 12.09 15.89 17.39 9.47 13.33 13.92 11.11 12.28 9.86 15.73 17.76 K intron_retention CG4351 chrX - chrX_12992626_12994917 chrX_12992625_12992626;chrX_12994917_12994918 chrX_12992470_12992625;chrX_12994918_12995574 0.00 NA 0.00 NA NA NA NA NA 0.00 0.00 NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA 0.00 0.00 0.00 6.67 NA NA NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 3.70 NA NA NA 0.00 NA 0.00 0.00 NA 4.00 NA 0.00 NA NA NA NA 0.00 K intron_retention CG3662,I_chr2L_822032_822857 chr2L + chr2L_824138_824190 chr2L_824137_824138;chr2L_824190_824191 chr2L_823637_824137;chr2L_824191_824354 96.75 100.00 91.57 98.80 97.78 96.83 96.62 95.67 97.48 97.67 97.73 95.72 96.75 96.09 95.45 96.39 100.00 98.46 96.46 96.86 89.39 71.26 99.21 93.81 95.00 98.67 95.24 98.04 96.67 94.05 92.47 98.08 98.08 97.01 92.94 98.28 98.33 98.18 88.64 94.71 97.66 95.09 91.86 93.18 97.04 99.15 95.51 98.01 96.77 95.73 96.26 94.81 98.73 97.54 95.15 98.15 95.04 98.30 K intron_retention hipk,RI_chr3L_548068_552227 chr3L + chr3L_546199_547481 chr3L_546198_546199;chr3L_547481_547482 chr3L_546192_546198;chr3L_547482_547580 0.00 4.76 0.00 2.70 NA 0.00 5.26 4.48 2.04 NA 0.00 6.90 0.00 0.00 0.00 2.30 0.00 0.00 2.27 0.00 0.00 9.09 0.00 NA NA 11.11 6.67 NA NA NA 3.45 NA NA 0.00 0.00 NA NA NA NA 5.00 NA 4.55 0.00 0.00 NA NA NA 0.00 0.00 NA 3.23 NA NA NA 3.45 NA NA NA K jcn_only_AA CG8889 chr2R - chr2R_7914078_7914227 chr2R_7914105_7914227 chr2R_7914228_7914347;chr2R_7914036_7914077 4.01 NA NA 0.00 NA NA 4.17 3.85 0.00 NA NA 0.00 NA NA NA 7.69 NA NA NA 7.41 NA 14.29 5.00 NA NA NA 0.00 NA NA NA 5.00 NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA 11.54 NA NA 0.00 NA 0.00 NA NA NA NA 0.00 NA NA K jcn_only_AA Df31,EI_chr2L_21628210_21629715,REI_chr2L_21628210_21629884 chr2L - chr2L_21628210_21629884 chr2L_21629777_21629884 chr2L_21629885_21629918 71.96 NA NA 85.00 NA NA NA NA 70.59 88.00 NA 62.96 NA NA NA 92.00 NA NA NA 81.48 NA NA NA NA NA NA NA NA NA NA NA NA NA 73.33 NA NA NA NA NA 60.23 NA 73.53 NA 66.67 64.00 NA NA 37.50 84.09 NA NA NA NA NA NA NA NA 62.96 K alternative_donor CG8494 chr2R + chr2R_10127619_10127715 chr2R_10127624_10127715 chr2R_10127716_10128082;chr2R_10127505_10127618 0.00 0.00 NA 0.00 NA NA 5.56 0.00 4.35 NA NA 3.85 NA NA NA NA NA NA NA 0.00 NA 4.00 2.63 0.00 0.00 NA 10.53 NA 0.00 0.00 7.69 0.00 NA 3.85 NA 0.00 0.00 0.00 0.00 3.70 NA 0.00 NA 5.56 NA 4.55 NA NA 0.00 7.14 2.38 NA 0.00 6.67 NA NA NA NA N jcn_only_AD shep,RI_chr3L_5163541_5194164,I_chr3L_5177084_5177314,I_chr3L_5193467_5212049 chr3L - chr3L_5155711_5156456 chr3L_5155711_5156066 chr3L_5155556_5155710 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.66 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.72 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.40 100.00 100.00 100.00 K jcn_only_AD scrib,I_chr3R_22362324_22363015,I_chr3R_22381374_22399575,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22362244_22363092;chr3R_22362120_22363092;chr3R_22362315_22363092;chr3R_22362254_22363092;chr3R_22362224_22363092;chr3R_22362324_22363092 chr3R_22362142_22363092 chr3R_22363093_22363115;chr3R_22362112_22362119 3.85 2.56 4.76 5.36 5.00 4.55 4.17 4.32 4.89 1.89 7.32 4.49 4.00 6.74 3.06 0.92 5.68 2.22 1.01 4.42 5.81 2.52 3.23 4.04 9.38 3.75 0.00 4.05 5.04 1.42 3.12 1.35 4.61 1.39 3.05 4.76 5.95 7.46 6.74 1.89 4.04 1.70 1.22 3.92 2.99 6.48 3.85 2.80 6.33 2.08 2.46 1.43 2.33 0.00 6.61 0.00 0.00 3.23 K intron_retention RpL14,snoRNA:U49:66Db chr3L + chr3L_8594943_8595202 chr3L_8594942_8594943;chr3L_8595202_8595203 chr3L_8594748_8594942;chr3L_8595203_8595483 0.00 0.00 0.00 0.02 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.03 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.02 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9839 chr3R - chr3R_4630849_4630913 chr3R_4630848_4630849;chr3R_4630913_4630914 chr3R_4629180_4630848;chr3R_4630914_4631449 6.06 4.65 6.67 16.67 0.00 10.00 6.67 2.13 6.59 0.00 0.00 9.46 5.77 2.86 8.33 0.00 17.86 5.71 0.00 2.63 6.06 6.25 5.00 12.82 8.00 4.65 8.33 25.00 10.81 0.00 4.17 6.25 10.00 12.00 0.00 0.00 2.27 0.00 0.00 8.89 3.45 7.89 3.57 9.68 12.50 8.16 2.56 9.30 7.55 7.14 0.00 11.11 6.67 0.00 5.00 5.56 10.34 4.76 K jcn_only_AA GstD10,RI_chr3R_8191329_8191412,I_chr3R_8192634_8193249 chr3R - chr3R_8191305_8191412 chr3R_8191329_8191412 chr3R_8191413_8191512;chr3R_8191229_8191304 13.64 NA NA 13.64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Ank,RI_chr4_144049_144406,I_chr4_144066_144410,I_chr4_150069_150423 chr4 - chr4_144049_144410 chr4_144049_144406 chr4_143966_144048;chr4_144411_144506 8.14 9.62 5.69 8.68 9.17 7.01 9.39 5.66 5.68 15.38 5.59 10.20 2.91 8.70 13.45 7.36 5.88 8.39 5.91 7.02 11.36 7.81 8.05 5.88 12.90 12.15 18.44 7.14 20.51 8.16 16.26 8.70 16.38 7.18 13.11 10.23 5.38 7.94 2.38 2.21 16.13 8.70 7.95 0.91 NA 12.07 9.09 5.84 7.98 NA 7.08 4.30 0.00 NA 8.13 10.00 11.11 10.00 K jcn_only_AA CG8949,I_chrX_16964662_16964766,I_chrX_16971501_16971713 chrX - chrX_16964656_16964778 chrX_16964662_16964778 chrX_16964779_16964866;chrX_16964562_16964655 89.84 89.69 93.06 96.46 96.36 89.23 94.94 91.25 89.39 81.25 83.61 93.71 93.33 87.72 90.79 89.66 91.80 94.92 93.88 89.93 94.64 88.35 91.61 92.45 95.28 87.93 89.32 88.89 77.78 89.61 87.91 90.48 88.61 91.40 91.55 91.25 89.09 88.00 89.84 89.29 92.50 92.75 95.65 89.72 89.04 92.77 89.53 89.47 87.25 89.38 95.69 89.86 85.00 88.89 88.73 90.77 93.06 79.10 K intron_retention msps,I_chr3R_11877071_11877796 chr3R + chr3R_11883112_11883273 chr3R_11883111_11883112;chr3R_11883273_11883274 chr3R_11883058_11883111;chr3R_11883274_11883487 5.63 NA 0.00 0.00 5.26 NA NA 14.29 20.69 0.00 NA 6.67 NA 28.57 NA 9.09 NA 0.00 NA 3.57 NA 3.03 12.00 0.00 NA NA 0.00 7.69 NA 5.56 17.65 12.50 9.09 21.05 12.50 0.00 3.03 0.00 0.00 20.00 NA NA NA 9.09 NA 0.00 NA 5.71 15.00 NA 5.26 7.69 NA NA NA 0.00 NA NA K alternative_acceptor CG42390 chr3R + chr3R_17957065_17957822 chr3R_17957065_17957292 chr3R_17956965_17957064;chr3R_17957823_17957966 6.67 NA NA NA NA NA NA NA 6.67 NA NA 10.00 NA NA NA NA NA NA NA NA NA 11.63 7.69 5.88 7.69 NA 6.67 0.00 8.00 9.09 NA 7.69 8.70 NA 0.00 10.53 4.55 NA 0.00 7.41 0.00 NA NA 0.00 5.56 4.55 7.14 0.00 NA 9.38 9.52 NA NA 6.25 NA 11.76 5.56 4.76 K intron_retention RpS4,snoRNA:Psi28S-3327a,snoRNA:Psi28S-3327b,Syx13,RI_chr3L_13037959_13038017,CG11279 chr3L + chr3L_13035640_13036265 chr3L_13035639_13035640;chr3L_13036265_13036266 chr3L_13035542_13035639;chr3L_13036266_13036437 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.04 0.04 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.02 0.00 0.00 0.01 0.00 0.00 0.00 0.03 0.03 0.07 0.03 0.03 0.03 0.00 0.00 0.00 0.00 0.00 0.01 0.02 K intron_retention CG31211 chr3R + chr3R_7777548_7777903 chr3R_7777547_7777548;chr3R_7777903_7777904 chr3R_7777445_7777547;chr3R_7777904_7777960 34.62 33.33 39.29 44.68 26.32 26.67 43.75 40.82 37.78 16.67 31.58 34.55 41.94 39.29 28.95 47.22 39.13 38.46 43.75 39.47 31.82 35.71 39.13 46.15 30.77 50.00 47.62 41.67 21.43 29.63 40.54 35.00 17.24 38.00 38.89 60.00 34.48 33.33 31.25 41.67 34.62 38.78 33.33 34.62 28.00 25.00 33.33 24.44 30.23 26.67 34.62 29.41 19.05 19.05 46.15 33.33 23.33 23.40 K intron_retention I_chr3L_1494947_1496080,pUf68,psnoRNA:pUf68-a,RI_chr3L_1499880_1501350 chr3L - chr3L_1498797_1499042 chr3L_1498796_1498797;chr3L_1499042_1499043 chr3L_1498293_1498796;chr3L_1499043_1499337 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pabp2,I_chr2R_4020297_4020426 chr2R + chr2R_4018994_4019087 chr2R_4018993_4018994;chr2R_4019087_4019088 chr2R_4018991_4018993;chr2R_4019088_4019228 94.74 95.00 94.12 96.43 100.00 94.44 92.50 97.67 98.21 NA 100.00 97.96 91.30 92.86 100.00 93.62 100.00 94.74 94.12 96.30 87.50 93.75 94.44 94.12 100.00 94.44 100.00 90.00 100.00 88.89 96.15 NA 88.89 92.00 100.00 NA 94.74 92.86 90.91 94.74 90.00 100.00 96.30 91.67 100.00 91.67 93.75 94.74 92.45 100.00 94.74 100.00 100.00 NA 92.59 100.00 100.00 100.00 K intron_retention Nup98 chr3R - chr3R_19601187_19601243 chr3R_19601186_19601187;chr3R_19601243_19601244 chr3R_19600777_19601186;chr3R_19601244_19602255 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 K intron_retention CG5323 chr2R + chr2R_14502978_14503074 chr2R_14502977_14502978;chr2R_14503074_14503075 chr2R_14502813_14502977;chr2R_14503075_14503504 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9172,eIF5,EI_chrX_15885411_15885854 chrX - chrX_15880720_15880770 chrX_15880719_15880720;chrX_15880770_15880771 chrX_15879877_15880719;chrX_15880771_15880778 7.89 12.50 9.38 6.12 8.00 8.33 7.27 1.67 3.39 6.25 6.90 9.09 14.29 7.41 11.90 7.89 6.25 7.14 8.82 6.74 7.69 0.00 14.29 0.00 14.29 11.76 25.00 36.36 35.00 10.53 11.43 26.32 19.35 4.08 10.00 11.76 0.00 5.00 9.09 8.57 17.39 5.00 0.00 0.00 8.70 12.12 0.00 15.62 7.02 0.00 0.00 0.00 NA NA 2.38 0.00 3.85 14.58 N alternative_acceptor RI_chrX_22094836_22142377,noncoding_25169 chrX + chrX_22120111_22120222 chrX_22120111_22120219 chrX_22120097_22120110;chrX_22120223_22120518 5.26 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 10.53 K alternative_donor CG32163 chr3L + chr3L_16580506_16580609;chr3L_16580348_16580609 chr3L_16580557_16580609 chr3L_16580610_16580996;chr3L_16580335_16580347 50.00 42.86 33.33 80.00 40.00 33.33 42.11 50.00 47.62 NA 42.86 50.00 75.00 66.67 50.00 57.89 57.14 42.86 46.67 69.23 66.67 66.67 50.00 50.00 NA 75.00 62.50 NA 50.00 NA 54.55 11.11 NA 57.14 NA NA 60.00 33.33 28.57 58.33 NA 50.00 60.00 57.14 42.86 50.00 50.00 NA 41.18 30.77 62.50 33.33 36.36 60.00 55.56 50.00 46.67 42.86 K jcn_only_AD Nc73EF,I_chr3L_16950628_16951334,I_chr3L_16950952_16952198,I_chr3L_16951588_16952198,I_chr3L_16951626_16952198,I_chr3L_16952138_16952198,I_chr3L_16952985_16955434,I_chr3L_16953768_16954599 chr3L + chr3L_16950606_16952198;chr3L_16950615_16952198 chr3L_16950628_16952198 chr3L_16952199_16952207;chr3L_16950580_16950605 81.82 69.57 74.42 83.78 80.77 70.37 83.33 82.35 85.42 NA NA 72.31 93.10 80.77 78.95 84.21 69.23 NA 81.58 80.49 87.50 84.38 71.43 85.71 82.76 NA 87.50 86.67 NA NA 80.00 NA NA 78.18 81.58 100.00 86.11 85.71 81.82 85.71 NA 70.00 72.73 85.71 81.82 80.77 59.26 NA 77.94 73.58 84.51 82.14 NA 90.00 81.25 74.36 92.00 NA K intron_retention Spn5,CG6687 chr3R - chr3R_11029212_11029271 chr3R_11029211_11029212;chr3R_11029271_11029272 chr3R_11028747_11029211;chr3R_11029272_11030269 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17398749_17398908 chr2R_17398771_17398908 chr2R_17398909_17399008;chr2R_17398671_17398748 0.00 2.56 2.04 0.00 0.00 0.00 0.00 0.00 0.87 1.82 0.00 0.00 0.00 2.44 2.56 0.00 0.00 1.69 0.00 0.00 0.00 0.00 4.08 0.00 2.38 0.00 2.04 0.00 2.44 0.00 3.61 0.00 2.56 1.23 3.03 0.00 0.00 0.00 0.00 1.11 2.44 2.48 2.22 3.45 0.00 2.00 0.00 1.69 1.25 0.00 0.00 0.00 0.00 2.94 0.00 0.00 1.03 0.00 K intron_retention g,I_chrX_13628772_13629563 chrX - chrX_13623057_13623116 chrX_13623056_13623057;chrX_13623116_13623117 chrX_13622916_13623056;chrX_13623117_13623726 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.70 20.00 5.56 0.00 NA NA NA 6.67 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 NA K cassette eIF5,noncoding_24049,EI_chrX_15885411_15885854,RI_chrX_15885416_15885611 chrX - chrX_15883984_15885854 chrX_15883984_15885115;chrX_15885411_15885854 chrX_15885116_15885410 chrX_15883938_15883983;chrX_15885855_15885912 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.11 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor RpL29,I_chr2R_17184688_17191389 chr2R + chr2R_17181380_17181558 chr2R_17181380_17181555 chr2R_17181355_17181379;chr2R_17181559_17181664 0.40 0.54 0.21 0.24 0.20 0.27 0.27 0.20 0.22 0.28 0.30 0.26 0.19 0.28 0.21 0.22 0.26 0.26 0.26 0.28 0.28 1.30 1.03 0.49 0.17 0.24 1.56 0.76 1.21 1.43 0.33 0.94 1.71 0.24 1.20 2.02 0.68 0.53 0.57 0.40 1.21 0.21 0.36 0.70 0.40 1.75 0.75 1.64 0.33 0.55 0.80 0.42 0.46 1.21 0.25 0.23 0.47 2.29 N alternative_donor CG2003 chr3R + chr3R_27815249_27815312;chr3R_27815189_27815312 chr3R_27815253_27815312 chr3R_27815313_27816636;chr3R_27815109_27815188 2.33 1.92 0.00 8.00 3.45 2.17 2.08 1.47 8.08 0.00 0.00 10.53 2.56 2.56 0.00 0.00 2.70 0.00 0.00 2.00 0.00 0.00 10.17 3.45 0.00 3.23 2.27 2.78 0.00 1.92 29.82 11.90 10.53 0.00 0.00 5.00 12.96 12.50 1.64 9.46 0.00 2.25 0.00 2.44 1.92 12.90 0.00 9.84 2.33 4.55 2.99 5.71 3.57 2.56 1.96 12.96 0.00 8.24 K alternative_donor Graf,RI_chrX_15652351_15654288,RI_chrX_15652363_15654157,RI_chrX_15652363_15654499,RI_chrX_15654228_15654288 chrX - chrX_15652363_15654499;chrX_15652363_15654157 chrX_15652363_15654272 chrX_15652357_15652362;chrX_15654500_15654599 50.00 NA 50.00 33.33 NA 40.00 50.00 81.82 33.33 NA NA 63.64 33.33 83.33 60.00 64.29 NA 50.00 80.00 45.45 33.33 20.00 20.00 NA 50.00 40.00 50.00 NA 50.00 NA 50.00 NA 33.33 64.71 66.67 50.00 NA NA 66.67 83.33 NA 69.23 25.00 NA NA NA NA 25.00 76.92 NA 66.67 NA NA NA 42.86 NA NA 75.00 K jcn_only_AD CG2177,I_chr4_334269_334329,I_chr4_334269_334505 chr4 - chr4_334269_334324;chr4_334269_334373 chr4_334269_334329 chr4_334169_334268;chr4_334374_334429 0.00 1.64 0.00 1.26 0.00 0.00 0.73 0.44 0.63 0.00 0.00 0.93 0.93 0.00 0.65 2.28 0.00 0.00 0.00 1.10 0.00 0.00 2.04 1.35 1.28 0.81 0.00 0.00 0.90 0.00 1.38 0.00 0.67 0.00 0.00 0.00 3.23 0.00 1.69 0.00 0.97 2.16 0.00 0.00 0.00 0.71 0.00 0.52 0.41 0.00 0.00 0.00 0.00 0.00 2.19 1.56 0.00 0.38 K cassette gro chr3R + chr3R_21871550_21872454 chr3R_21871550_21872260;chr3R_21872315_21872454 chr3R_21872261_21872314 chr3R_21871451_21871549;chr3R_21872455_21872631 91.49 88.57 94.64 91.04 88.89 93.75 77.50 91.30 93.06 84.00 96.97 88.89 96.43 93.55 86.79 95.65 96.67 91.67 95.45 90.36 94.87 94.44 92.86 96.77 88.24 91.49 96.43 77.78 67.39 92.31 97.67 91.67 96.69 94.59 96.67 85.29 97.92 84.62 88.57 93.33 83.67 95.45 93.48 90.62 74.29 85.71 85.71 90.24 89.41 89.19 96.15 95.00 85.19 73.68 88.33 87.50 72.00 97.56 K jcn_only_AA CG32412 chr3L - chr3L_5895356_5895434 chr3L_5895377_5895434 chr3L_5895435_5895550;chr3L_5895260_5895355 0.68 0.00 1.43 0.00 0.00 0.00 0.00 1.27 1.90 0.00 3.12 0.78 4.44 1.85 2.22 0.00 5.66 0.00 0.00 2.01 0.00 1.30 0.73 0.64 1.39 0.00 1.61 0.00 3.77 0.00 0.00 0.00 3.28 2.30 0.00 0.00 0.58 6.06 0.00 0.79 0.00 1.34 1.92 0.00 0.58 1.82 0.93 1.18 0.68 0.81 1.92 0.00 0.00 2.00 2.56 0.00 0.00 0.00 K intron_retention CG15544 chr3R + chr3R_26665752_26666166 chr3R_26665751_26665752;chr3R_26666166_26666167 chr3R_26664017_26665751;chr3R_26666167_26667723 6.67 0.00 11.76 7.41 0.00 0.00 0.00 2.63 12.20 NA 11.11 13.95 10.00 5.56 7.69 0.00 0.00 7.41 10.34 11.48 6.67 0.00 0.00 0.00 NA 0.00 14.29 6.67 25.00 12.50 10.53 NA 9.09 9.52 NA 5.26 0.00 NA 0.00 10.81 NA 8.77 4.17 4.76 5.88 5.88 NA 12.00 11.76 NA 9.09 NA NA NA 6.67 NA NA 0.00 K alternative_acceptor Fps85D,I_chr3R_5194729_5194776,I_chr3R_5216796_5218450 chr3R - chr3R_5216796_5218462 chr3R_5216814_5218462 chr3R_5218463_5218550;chr3R_5216696_5216795 1.57 1.79 1.67 0.00 0.00 1.75 0.00 1.30 1.37 0.00 1.61 0.00 0.00 3.57 1.32 1.72 3.51 1.82 0.00 1.57 2.17 2.41 1.82 0.00 0.00 0.00 1.59 4.55 0.00 0.00 0.00 0.00 1.75 1.89 0.00 2.78 0.95 2.70 1.19 2.41 0.00 0.95 2.13 1.89 2.94 2.27 0.00 2.13 3.54 1.85 2.35 1.59 0.00 0.00 1.47 2.17 0.00 0.00 K intron_retention Irbp,Ranbp9 chr3R + chr3R_7241416_7241473 chr3R_7241415_7241416;chr3R_7241473_7241474 chr3R_7241270_7241415;chr3R_7241474_7241662 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.72 100.00 100.00 98.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.04 100.00 100.00 100.00 98.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.94 100.00 98.63 100.00 100.00 99.00 100.00 98.73 100.00 98.55 100.00 100.00 100.00 98.73 100.00 100.00 100.00 100.00 98.41 100.00 100.00 97.96 K jcn_only_AD CG6838,I_chr3L_22709306_22709668 chr3L - chr3L_22709303_22709406 chr3L_22709303_22709397 chr3L_22709206_22709302;chr3L_22709407_22709514 97.75 91.75 96.58 98.39 100.00 94.29 97.87 94.96 96.91 94.74 95.59 95.89 97.33 95.95 97.94 98.29 98.61 98.48 97.75 98.83 95.65 99.19 96.09 97.50 96.20 96.77 93.97 92.16 95.17 99.09 97.96 97.50 91.47 99.25 96.92 100.00 99.40 99.03 98.72 98.98 95.60 98.79 100.00 98.41 96.23 99.19 100.00 95.89 98.72 97.25 97.22 98.70 100.00 93.75 98.00 98.25 98.65 97.52 K alternative_acceptor wge chr3R - chr3R_18539117_18539306;chr3R_18539087_18539306 chr3R_18539090_18539306 chr3R_18539307_18539565;chr3R_18538527_18539086 0.00 6.67 0.00 0.00 0.00 0.00 8.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 2.08 4.65 3.57 0.00 0.00 11.54 0.00 0.00 0.00 3.92 0.00 0.00 0.00 0.00 0.00 5.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 3.23 0.00 8.33 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG6459,RI_chr2R_13565425_13565874 chr2R - chr2R_13559312_13559369 chr2R_13559326_13559369 chr2R_13559370_13559714;chr2R_13558812_13559311 0.00 0.39 0.38 0.53 0.00 0.52 0.58 0.27 0.00 0.48 0.00 0.24 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.21 0.00 0.00 0.29 0.32 0.52 0.00 0.26 0.37 0.40 0.46 0.00 0.55 0.56 0.93 0.00 0.00 0.41 0.36 0.00 0.32 0.00 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.25 0.00 0.28 0.00 0.00 0.00 0.00 0.68 0.00 0.00 K intron_retention drpr,I_chr3L_1720385_1723579 chr3L - chr3L_1716557_1716796 chr3L_1716556_1716557;chr3L_1716796_1716797 chr3L_1715710_1716556;chr3L_1716797_1716943 3.15 2.57 3.69 5.51 3.09 2.78 3.09 3.85 3.07 2.61 4.08 3.91 5.98 5.96 3.04 3.27 3.10 2.85 2.66 2.45 3.73 3.24 5.00 4.63 5.52 0.88 2.78 5.65 3.72 3.07 2.56 2.41 3.15 4.05 4.26 5.36 2.76 3.57 2.72 3.51 4.46 3.15 2.64 2.83 2.20 2.50 3.33 5.54 3.04 3.40 3.21 3.42 2.00 4.00 2.53 3.03 2.34 3.64 K intron_retention Ptpmeg,I_chr3L_353688_353782,I_chr3L_355125_355175 chr3L + chr3L_347780_351366 chr3L_347779_347780;chr3L_351366_351367 chr3L_347766_347779;chr3L_351367_351663 10.62 11.11 0.00 0.00 14.29 0.00 13.79 16.67 11.90 NA 15.00 6.45 12.50 7.41 13.04 7.14 0.00 29.41 7.41 14.29 7.69 80.00 9.09 5.00 NA 15.00 19.05 4.76 18.52 8.33 4.35 0.00 14.71 10.71 10.53 0.00 NA 0.00 NA 13.33 6.90 10.26 15.79 18.75 0.00 2.86 14.29 7.14 10.87 17.65 12.50 NA 14.29 NA 8.70 16.67 NA 5.26 K jcn_only_AD CG32250,RI_chr3L_4319452_4320137 chr3L + chr3L_4319260_4320137 chr3L_4319452_4320137 chr3L_4320138_4320237;chr3L_4319199_4319259 0.00 0.00 NA 0.00 0.00 0.00 NA 9.52 3.33 NA NA 2.13 NA NA 0.00 NA NA NA NA 0.00 NA 5.13 0.00 0.00 3.45 NA 15.00 NA 0.00 0.00 NA 0.00 0.00 4.00 2.56 0.00 0.00 0.00 3.12 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA NA 4.17 NA 9.09 NA 0.00 K intron_retention unc-13,RI_chr4_892852_895828,RI_chr4_894198_895828,E_chr4_894796_894871,I_chr4_895008_895828,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_892852_895828 chr4_892851_892852;chr4_895828_895829 chr4_892753_892851;chr4_895829_895928 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD gish chr3R + chr3R_12100604_12100675;chr3R_12100598_12100675 chr3R_12100608_12100675 chr3R_12100676_12100891;chr3R_12100535_12100597 14.29 NA NA 8.00 NA NA 14.29 20.83 14.29 0.00 NA 22.58 NA NA NA NA NA NA NA 6.25 NA NA NA NA NA NA NA NA NA 19.35 11.11 NA 15.00 14.29 NA NA NA NA NA 6.98 NA 15.00 NA 12.50 NA 7.41 NA 17.50 4.76 NA NA 15.00 NA NA NA NA NA 17.14 K intron_retention CG4789,ppk28 chrX + chrX_16695621_16695686 chrX_16695620_16695621;chrX_16695686_16695687 chrX_16695102_16695620;chrX_16695687_16696067 2.90 0.00 0.00 12.99 0.00 3.17 6.35 6.25 2.94 0.00 0.00 0.00 0.00 0.00 5.00 7.55 0.00 2.90 0.00 2.92 0.00 1.92 4.17 2.06 4.55 5.26 4.00 12.20 3.28 6.90 3.28 4.12 2.35 0.00 2.44 5.63 2.75 1.22 1.06 2.75 6.85 2.36 4.65 1.41 3.85 5.93 2.38 9.71 2.94 3.33 2.50 0.00 0.00 2.41 1.47 4.50 3.23 5.56 K intron_retention CG17002 chr2R + chr2R_2875771_2876087 chr2R_2875770_2875771;chr2R_2876087_2876088 chr2R_2875292_2875770;chr2R_2876088_2876423 36.28 42.11 42.86 60.00 63.64 26.67 36.84 45.45 37.04 NA NA 33.33 NA 40.00 35.71 38.46 41.67 NA NA 45.00 NA 34.78 28.57 45.45 40.00 NA 39.13 40.00 38.46 33.33 NA 17.65 35.71 30.77 33.33 27.78 29.03 26.09 43.75 26.32 NA 42.86 NA 50.00 30.00 23.08 33.33 NA 41.18 22.22 50.00 NA 18.18 29.63 40.00 19.35 35.14 NA K alternative_acceptor CG8671,I_chr2L_21275807_21277205 chr2L + chr2L_21263124_21263722 chr2L_21263124_21263647 chr2L_21262988_21263123;chr2L_21263723_21263786 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention pum,I_chr3R_4898752_4906279,I_chr3R_4989351_5039481 chr3R - chr3R_4906745_5039481 chr3R_4906744_4906745;chr3R_5039481_5039482 chr3R_4906280_4906744;chr3R_5039482_5039568 0.00 0.00 5.56 0.00 0.00 5.56 0.00 3.57 4.08 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8726 chr2R - chr2R_3856982_3857078 chr2R_3856981_3856982;chr2R_3857078_3857079 chr2R_3856756_3856981;chr2R_3857079_3857274 2.84 0.00 0.00 4.65 3.85 0.00 0.00 0.00 2.67 0.00 0.00 4.17 0.00 3.85 0.00 9.52 4.00 3.12 NA 5.38 4.76 2.33 2.78 3.12 0.00 0.00 5.56 8.51 4.44 3.85 0.00 0.00 7.41 0.00 0.00 0.00 4.88 0.00 2.60 5.17 0.00 2.90 0.00 8.89 12.24 10.42 6.35 11.90 4.62 0.00 0.00 0.00 2.70 5.00 7.41 9.76 2.44 11.11 K alternative_donor rtet,I_chr3R_16934777_16934968,RE_chr3R_16939259_16939667 chr3R + chr3R_16934773_16934968 chr3R_16934777_16934968 chr3R_16934969_16935068;chr3R_16934677_16934772 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 K intron_retention RanBPM chr2R + chr2R_6321229_6321291 chr2R_6321228_6321229;chr2R_6321291_6321292 chr2R_6321047_6321228;chr2R_6321292_6321404 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4670,I_chr2R_9120056_9120120 chr2R - chr2R_9120056_9120974 chr2R_9120055_9120056;chr2R_9120974_9120975 chr2R_9119956_9120055;chr2R_9120975_9122801 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 1.49 1.72 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG4365 chr3L + chr3L_20791960_20792242;chr3L_20792089_20792242;chr3L_20791819_20792242;chr3L_20792077_20792242 chr3L_20792100_20792242 chr3L_20792243_20793181;chr3L_20791802_20791818 3.45 3.85 7.14 4.44 NA NA 3.70 0.00 2.99 NA 4.88 0.00 NA 0.00 3.12 0.00 4.17 3.57 3.85 1.30 2.94 4.55 11.11 0.00 NA 3.45 3.57 0.00 NA NA 11.54 NA 3.45 0.00 NA NA 3.70 14.29 4.35 0.00 NA 3.64 6.45 0.00 4.55 3.70 0.00 4.00 0.00 3.33 0.00 NA 0.00 8.70 0.00 0.00 0.00 6.25 K intron_retention tay,RI_chrX_15779977_15780033,I_chrX_15779977_15780538,RI_chrX_15780874_15781045,I_chrX_15783766_15785978 chrX - chrX_15779977_15781150 chrX_15779976_15779977;chrX_15781150_15781151 chrX_15779877_15779976;chrX_15781151_15781157 91.99 80.00 87.50 94.44 NA 90.00 92.86 94.74 80.00 NA 100.00 84.21 93.75 92.31 100.00 95.00 90.00 87.50 92.31 81.25 NA NA 100.00 NA NA 88.89 NA NA 80.00 91.67 90.91 NA 100.00 94.74 NA 92.31 100.00 NA NA 92.86 NA 90.00 91.67 NA NA NA NA 90.91 94.12 NA NA NA NA NA 87.50 NA NA NA K intron_retention I_chr3L_22843473_22858870,CG33170,noncoding_14230,I_chr3L_22859135_22860499 chr3L + chr3L_22858026_22858870 chr3L_22858025_22858026;chr3L_22858870_22858871 chr3L_22857803_22858025;chr3L_22858871_22858924 0.00 0.00 2.00 1.56 0.00 0.00 0.00 1.03 2.16 0.00 0.00 1.32 2.70 1.82 5.45 0.00 0.00 0.00 0.00 2.61 0.00 0.00 3.23 0.00 2.94 0.00 5.00 0.00 0.00 0.00 1.54 1.25 0.00 1.43 0.00 9.09 0.00 0.00 0.00 2.20 2.30 1.83 0.00 0.00 0.00 0.00 0.00 1.82 1.22 1.09 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.57 K jcn_only_AA CG10462 chr2L - chr2L_19732671_19732744 chr2L_19732677_19732744 chr2L_19732745_19733069;chr2L_19732573_19732670 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.61 100.00 100.00 100.00 99.06 98.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.05 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2814327_2817753 chr2R_2814327_2814894;chr2R_2815654_2816013;chr2R_2816342_2817327;chr2R_2817604_2817753 chr2R_2814895_2815653;chr2R_2816014_2816341;chr2R_2817328_2817603 chr2R_2814227_2814326;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 N alternative_acceptor CG8839,I_chr2R_8229288_8231538 chr2R - chr2R_8228920_8228992 chr2R_8228935_8228992 chr2R_8228993_8229287;chr2R_8228715_8228919 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 68.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_last_exon CG1646,RI_chr3R_24638209_24638280,I_chr3R_24641816_24641874 chr3R + chr3R_24639729_24640869 chr3R_24639729_24639911 chr3R_24640870_24641144 chr3R_24639912_24639980 chr3R_24639603_24639728 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.39 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.88 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.71 0.00 0.00 0.00 0.97 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17760 chr2R + chr2R_8514422_8514488 chr2R_8514421_8514422;chr2R_8514488_8514489 chr2R_8514412_8514421;chr2R_8514489_8514557 1.39 1.23 0.00 4.05 0.00 1.85 1.09 2.70 0.44 0.00 0.00 2.06 0.00 0.00 2.96 3.05 0.00 3.92 3.28 2.84 2.06 0.00 1.15 0.00 4.62 1.68 4.76 0.00 3.12 1.79 1.75 1.39 2.70 2.55 1.22 3.77 0.00 0.00 2.70 0.86 3.06 1.88 1.20 1.04 0.00 2.86 3.12 2.68 0.41 2.70 5.68 0.00 0.00 0.00 0.00 1.09 1.32 1.61 K cassette I_chr2R_4783150_4783708,Ggamma1,noncoding_5300 chr2R + chr2R_4789028_4789832 chr2R_4789028_4789645;chr2R_4789783_4789832 chr2R_4789646_4789782 chr2R_4789007_4789027;chr2R_4789833_4790635 16.88 18.06 16.88 25.50 26.60 24.43 30.82 38.46 32.31 12.61 45.56 37.89 46.73 32.23 24.68 26.05 38.36 17.95 42.03 14.18 31.73 19.16 10.88 11.83 7.78 34.02 14.39 8.60 17.36 11.35 24.84 13.22 13.41 28.29 15.04 13.04 12.96 12.95 7.12 15.75 16.67 29.65 27.72 20.28 13.36 16.35 7.73 17.68 24.51 14.41 12.79 16.50 5.29 10.76 27.21 12.87 7.17 5.11 K alternative_donor ptr,I_chrX_2243281_2243359,I_chrX_2243281_2243373,I_chrX_2243647_2248739 chrX - chrX_2243281_2243374 chrX_2243281_2243359 chrX_2243181_2243280;chrX_2243375_2243459 0.00 5.56 0.00 3.33 NA 0.00 0.00 4.76 2.56 NA NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA 1.33 0.00 0.00 4.00 0.00 2.56 1.56 2.27 3.57 0.00 0.00 2.94 4.55 0.00 2.70 4.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 3.85 0.00 0.00 2.56 2.33 0.00 0.00 NA 0.00 NA NA 4.76 K jcn_only_AA nrv2,I_chr2L_6791842_6794492,I_chr2L_6793397_6794492,I_chr2L_6793405_6793916,I_chr2L_6793405_6794499,I_chr2L_6793684_6794492 chr2L - chr2L_6793374_6794492 chr2L_6793405_6794492 chr2L_6794493_6794592;chr2L_6793305_6793373 100.00 100.00 97.92 100.00 100.00 100.00 97.30 100.00 98.91 100.00 NA 96.81 100.00 100.00 100.00 100.00 95.83 100.00 100.00 99.07 96.00 100.00 100.00 100.00 96.55 100.00 100.00 NA 96.55 97.62 100.00 100.00 96.77 100.00 100.00 100.00 98.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.21 98.97 100.00 100.00 98.11 97.73 100.00 98.55 98.18 98.53 100.00 K alternative_donor I_chr2R_401246_447865,Stlk,CREI_chr2R_434560_435506 chr2R + chr2R_434486_447865 chr2R_434560_447865 chr2R_447866_447950;chr2R_434460_434485 100.00 100.00 100.00 100.00 NA NA 88.00 95.00 100.00 NA 100.00 100.00 92.31 100.00 NA 96.15 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA NA NA 90.00 NA NA 100.00 100.00 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 96.00 85.71 100.00 87.50 NA NA 100.00 NA 100.00 100.00 K intron_retention CG5805 chr3R - chr3R_20611310_20611508 chr3R_20611309_20611310;chr3R_20611508_20611509 chr3R_20610319_20611309;chr3R_20611509_20611636 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Ac3,I_chr2L_21643253_21646594 chr2L + chr2L_21643253_21643763 chr2L_21643252_21643253;chr2L_21643763_21643764 chr2L_21643170_21643252;chr2L_21643764_21644219 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA 5.88 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 5.26 NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2389272_2395659 chrX_2389272_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2395659 chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2389172_2389271;chrX_2395660_2395759 33.33 NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor RpL15 chr3LHet + chr3LHet_2398018_2398127;chr3LHet_2397859_2398127;chr3LHet_2397925_2398127;chr3LHet_2397992_2398127;chr3LHet_2398060_2398127;chr3LHet_2397841_2398127;chr3LHet_2398002_2398127;chr3LHet_2397820_2398127 chr3LHet_2398053_2398127 chr3LHet_2398128_2398454;chr3LHet_2397802_2397819 4.17 14.29 2.17 1.04 0.00 6.67 19.44 2.18 15.62 4.17 4.55 8.93 11.11 11.11 0.78 12.07 1.23 3.33 1.04 4.84 0.00 5.80 22.22 8.70 5.56 1.56 17.86 1.60 4.20 1.25 3.77 1.31 0.46 0.79 4.76 8.57 11.11 15.38 16.67 0.67 2.21 1.59 1.56 0.89 0.49 2.45 16.67 1.28 3.23 17.39 21.74 23.53 0.16 21.05 1.20 19.23 16.67 0.17 K jcn_only_AD CG11347,I_chr3L_4412551_4417819 chr3L + chr3L_4419173_4419428 chr3L_4419263_4419428 chr3L_4419429_4419663;chr3L_4418782_4419172 30.69 37.84 27.78 24.32 32.00 33.33 40.62 37.04 38.71 NA 23.81 37.31 41.94 40.00 32.14 56.52 25.00 25.00 35.71 37.14 38.46 9.93 28.57 30.95 22.58 31.71 42.86 41.18 27.45 32.14 38.10 24.14 38.10 38.89 10.71 28.89 27.78 37.84 32.14 12.82 29.79 28.07 19.05 32.61 19.57 14.63 28.21 23.64 37.74 20.69 19.57 30.43 41.86 25.58 28.57 39.29 30.43 20.69 K jcn_only_AA Dad,I_chr3R_12893363_12894192,I_chr3R_12898717_12898778 chr3R + chr3R_12880085_12880773 chr3R_12880085_12880757 chr3R_12879745_12880084;chr3R_12880774_12880896 5.00 NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor RI_chrX_502548_513324,CG13366,I_chrX_509497_513324,I_chrX_513176_513324,I_chrX_513519_513631 chrX - chrX_509546_513324 chrX_513176_513324 chrX_513325_513424;chrX_508807_509545 0.00 0.00 0.00 18.18 25.00 0.00 33.33 22.22 28.57 NA 0.00 18.18 20.00 16.67 33.33 66.67 0.00 0.00 20.00 50.00 0.00 33.33 14.29 0.00 0.00 16.67 0.00 0.00 0.00 0.00 0.00 NA 0.00 25.00 0.00 0.00 0.00 NA 0.00 12.50 NA 22.22 0.00 0.00 NA 0.00 NA 6.67 25.00 NA 0.00 0.00 0.00 NA 20.00 NA NA 0.00 K alternative_donor CG3621,noncoding_21543,I_chrX_2066779_2066838 chrX + chrX_2066779_2066838;chrX_2066739_2066838 chrX_2066737_2066838 chrX_2066839_2066938;chrX_2066679_2066736 0.91 1.67 0.00 0.00 3.03 2.00 0.00 1.35 1.43 2.38 0.00 1.03 0.00 0.00 1.59 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 1.16 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 2.33 1.59 0.98 1.92 1.01 1.11 1.85 0.91 2.70 1.67 0.00 1.05 0.00 0.00 1.28 0.00 1.56 2.50 1.41 0.00 1.79 0.00 0.00 1.00 K jcn_only_AA glo,I_chr3R_7644679_7644739,REI_chr3R_7644679_7644932,RI_chr3R_7644683_7644880,I_chr3R_7647556_7647628 chr3R - chr3R_7644679_7644932 chr3R_7644683_7644932 chr3R_7644933_7644980;chr3R_7644583_7644678 99.23 100.00 97.47 100.00 100.00 96.83 97.75 100.00 98.53 97.30 100.00 99.30 100.00 97.10 100.00 100.00 96.77 NA 98.67 98.17 100.00 99.38 99.32 96.97 100.00 100.00 99.24 98.29 98.31 100.00 98.98 100.00 97.27 99.22 98.78 98.15 100.00 100.00 98.80 99.40 100.00 98.56 100.00 98.47 98.51 99.07 100.00 98.69 98.78 97.40 98.91 100.00 100.00 100.00 96.08 100.00 100.00 98.12 K alternative_donor CG7536,I_chrX_17976413_17979287,I_chrX_17976413_17979359 chrX - chrX_17976413_17979230 chrX_17976413_17979226 chrX_17976313_17976412;chrX_17979231_17979526 25.00 19.51 22.86 25.58 28.57 26.92 26.83 29.55 30.77 45.45 23.68 26.92 17.65 37.93 14.71 26.47 19.05 16.67 20.00 20.00 30.56 25.00 26.98 22.73 26.47 24.24 24.59 44.00 34.88 30.00 19.35 22.73 32.00 27.45 32.26 22.22 25.00 26.32 24.59 13.58 25.00 20.25 22.22 19.72 26.09 23.91 26.47 29.82 30.51 30.00 27.66 24.00 13.79 40.00 25.00 30.77 12.20 15.38 K intron_retention spi,I_chr2L_19569183_19577185,I_chr2L_19569227_19572142,I_chr2L_19569227_19577173 chr2L - chr2L_19571768_19577185 chr2L_19571767_19571768;chr2L_19577185_19577186 chr2L_19571572_19571767;chr2L_19577186_19577273 0.00 0.00 0.00 0.00 0.00 0.00 1.01 1.33 0.72 0.00 0.00 1.69 0.00 0.00 0.00 1.35 0.00 0.00 2.38 1.17 0.00 0.00 0.00 0.00 0.00 0.00 0.52 6.06 0.00 0.00 1.16 0.00 0.00 0.90 0.47 0.41 0.00 0.00 0.56 0.55 0.00 0.00 0.00 0.72 0.00 0.00 0.80 0.00 0.89 1.69 1.25 0.84 0.00 0.00 0.00 1.01 0.59 0.00 K intron_retention CG31689,I_chr2L_2730373_2736310,I_chr2L_2730470_2736310,RI_chr2L_2736137_2736310,I_chr2L_2736230_2736310,I_chr2L_2736431_2737036 chr2L + chr2L_2730470_2736129 chr2L_2730469_2730470;chr2L_2736129_2736130 chr2L_2730383_2730469;chr2L_2736130_2736136 100.00 NA 100.00 92.86 NA 100.00 100.00 94.44 100.00 NA NA 95.00 100.00 100.00 92.31 96.15 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA 88.89 100.00 NA NA NA 100.00 NA NA 100.00 NA 100.00 NA NA NA 87.50 NA 100.00 100.00 NA NA NA NA 100.00 96.00 NA 100.00 100.00 NA NA 90.91 NA NA NA K intron_retention Mob2,CE_chr3L_11520917_11527526,RI_chr3L_11535932_11545929 chr3L - chr3L_11535935_11545929 chr3L_11535934_11535935;chr3L_11545929_11545930 chr3L_11535365_11535934;chr3L_11545930_11546029 15.38 12.50 7.69 6.90 NA 23.08 23.08 15.79 15.38 NA 50.00 20.83 NA 0.00 28.57 12.50 25.00 NA 26.09 17.65 NA 50.00 21.74 13.33 NA 23.53 14.29 NA NA 30.77 12.00 NA NA 17.86 NA NA 0.00 NA NA 5.26 NA 21.43 14.29 NA NA NA NA NA 9.76 NA 11.11 7.69 NA NA 11.11 NA NA NA K mutually_exclusive CG11009,I_chr3L_12844823_12845526,I_chr3L_12845441_12845526 chr3L + chr3L_12844823_12845526,chr3L_12845622_12845715 chr3L_12844823_12845331,chr3L_12845378_12845715 chr3L_12845527_12845621 chr3L_12845332_12845377 chr3L_12844723_12844822;chr3L_12845716_12845816 77.78 66.67 71.43 96.15 57.14 NA 83.33 84.62 90.00 83.33 63.64 91.67 NA NA 88.89 100.00 NA 77.78 62.50 100.00 100.00 NA 83.33 63.64 71.43 66.67 62.50 100.00 NA NA 91.67 80.00 77.78 62.50 NA 25.00 75.00 NA 66.67 NA 75.00 84.62 NA 66.67 85.71 85.71 70.00 100.00 75.00 75.00 61.54 77.78 NA NA 63.64 77.78 37.50 81.82 K jcn_only_AD CG1572,RI_chrX_11450380_11450442,I_chrX_11450380_11452520 chrX - chrX_11450380_11452571;chrX_11450380_11452565 chrX_11450380_11450442 chrX_11450280_11450379;chrX_11452572_11452620 0.09 0.16 0.08 0.45 0.00 0.20 0.00 0.25 0.09 0.00 0.00 0.04 0.08 0.00 0.08 0.16 0.07 0.00 0.20 0.16 0.00 0.25 0.00 0.20 0.28 0.00 0.34 0.00 0.00 0.00 0.08 0.21 0.00 0.15 0.00 0.14 0.22 0.17 0.00 0.10 0.00 0.32 0.00 0.25 0.26 0.00 0.00 0.22 0.22 0.08 0.15 0.09 0.22 0.00 0.07 0.34 0.15 0.33 K intron_retention CG10737 chr2R + chr2R_15061627_15061843 chr2R_15061626_15061627;chr2R_15061843_15061844 chr2R_15061209_15061626;chr2R_15061844_15061870 0.00 0.00 0.00 0.00 0.00 0.00 21.05 3.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette I_chr3L_1494947_1496080,pUf68,I_chr3L_1499710_1499771,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1499338_1501798 chr3L_1499338_1499771;chr3L_1499880_1500244;chr3L_1500389_1501350;chr3L_1501407_1501798 chr3L_1499772_1499879;chr3L_1500245_1500388;chr3L_1501351_1501406 chr3L_1499043_1499337;chr3L_1501799_1501892 4.76 3.03 2.00 6.45 0.00 1.92 0.00 9.09 5.62 5.00 11.11 8.05 27.78 5.56 2.82 3.17 4.00 2.27 4.35 4.71 9.09 7.55 7.02 5.66 7.89 1.37 5.36 6.52 2.27 4.76 8.82 2.08 5.71 3.33 6.12 11.43 4.76 3.57 4.76 3.12 5.00 4.00 3.92 5.88 3.70 7.25 6.00 3.37 2.97 6.35 8.22 6.12 0.00 3.23 4.62 7.41 4.00 2.94 K cassette CG9947,eIF-2alpha chrX - chrX_16333320_16333629 chrX_16333320_16333456;chrX_16333548_16333629 chrX_16333457_16333547 chrX_16333264_16333319;chrX_16333630_16333795 1.60 1.33 1.46 1.11 1.10 1.42 1.32 2.27 1.38 2.08 1.23 1.85 2.26 1.60 0.73 2.70 1.38 0.97 4.66 1.46 1.14 2.53 1.32 1.96 1.23 0.43 1.70 2.15 0.74 3.28 1.40 2.59 2.32 1.45 2.21 2.99 1.60 1.73 1.63 1.53 1.88 1.53 1.60 3.44 2.59 1.69 0.65 2.93 1.27 3.28 1.85 2.16 0.22 1.29 1.37 1.92 0.38 0.56 K cassette mthl4 chr2R - chr2R_13333190_13333481 chr2R_13333190_13333255;chr2R_13333425_13333481 chr2R_13333256_13333424 chr2R_13332995_13333189;chr2R_13333482_13333736 90.00 90.62 89.66 89.80 92.50 87.72 93.08 88.51 89.19 90.00 80.33 85.87 98.59 87.84 82.61 89.08 89.02 79.10 90.11 88.79 79.25 93.18 82.93 84.62 94.44 66.67 92.59 92.31 78.95 95.83 85.29 94.12 96.77 86.51 85.71 90.00 92.31 94.74 87.50 96.55 96.88 87.94 94.29 96.43 93.10 93.10 88.89 97.06 89.51 95.65 91.43 86.67 90.48 91.30 88.71 90.91 95.39 98.96 K alternative_acceptor Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045251_16046104;chr3L_16045251_16046129;chr3L_16045251_16046108;chr3L_16045251_16045854 chr3L_16045251_16046111 chr3L_16045216_16045250;chr3L_16046130_16046204 16.67 20.00 13.64 22.45 23.53 11.54 12.77 22.92 16.67 10.53 0.00 16.00 18.42 16.67 21.62 12.77 29.03 10.00 21.74 16.39 4.55 23.19 18.92 14.29 16.67 9.68 10.71 11.11 15.38 21.43 19.44 27.78 15.94 10.91 15.62 15.22 13.64 10.53 22.22 17.31 29.17 12.28 18.52 11.11 28.57 22.22 16.67 18.18 25.00 16.67 13.79 14.29 0.00 25.00 19.51 23.08 11.11 28.00 K intron_retention CG40191,I_chr2RHet_391475_391828,I_chr2RHet_392279_392824 chr2RHet + chr2RHet_391127_391180 chr2RHet_391126_391127;chr2RHet_391180_391181 chr2RHet_391077_391126;chr2RHet_391181_391278 11.90 16.67 19.57 10.67 13.95 11.90 11.43 16.19 17.53 NA 7.69 12.39 16.07 13.46 14.58 15.79 12.50 9.09 11.29 10.71 21.62 8.33 13.33 18.42 10.00 10.71 17.50 23.81 10.87 11.54 10.53 0.00 13.04 17.50 5.71 2.94 12.50 9.68 0.00 7.22 4.26 6.80 21.74 8.33 0.00 22.22 10.00 5.41 13.73 13.89 14.29 11.63 4.00 17.39 12.24 14.29 5.26 11.90 K intron_retention Nup358,I_chr3R_21078958_21079044 chr3R + chr3R_21082578_21082646 chr3R_21082577_21082578;chr3R_21082646_21082647 chr3R_21082077_21082577;chr3R_21082647_21082779 100.00 100.00 98.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.22 100.00 100.00 100.00 100.00 100.00 100.00 99.00 100.00 100.00 100.00 100.00 98.97 100.00 100.00 100.00 100.00 99.05 98.39 98.77 100.00 100.00 100.00 100.00 98.57 98.51 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.48 100.00 100.00 98.85 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.23 K intron_retention CG8312 chr3R + chr3R_5448140_5448191 chr3R_5448139_5448140;chr3R_5448191_5448192 chr3R_5448075_5448139;chr3R_5448192_5448496 0.00 0.00 0.00 7.69 NA 10.00 5.56 3.45 7.14 0.00 0.00 13.79 NA NA 0.00 NA 0.00 0.00 12.50 5.56 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 5.71 0.00 0.00 4.00 NA 8.82 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 5.56 NA 3.85 0.00 K intron_retention fs(1)h,I_chrX_7950171_7952371,I_chrX_7954192_7955240 chrX - chrX_7935313_7935383 chrX_7935312_7935313;chrX_7935383_7935384 chrX_7935144_7935312;chrX_7935384_7937766 0.00 0.00 2.27 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17180812_17181479,RI_chr3R_17181280_17181474,I_chr3R_17181974_17182126,RI_chr3R_17182422_17182532,RI_chr3R_17183087_17183245,RI_chr3R_17183087_17183726,I_chr3R_17183481_17200781,I_chr3R_17183927_17184513,I_chr3R_17183927_17185306,RI_chr3R_17184319_17184513,I_chr3R_17184319_17185084,I_chr3R_17184319_17185284,noncoding_18168,RI_chr3R_17184792_17185306,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,RI_chr3R_17189607_17189988,I_chr3R_17190098_17190207,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,I_chr3R_17197790_17197863,RI_chr3R_17198778_17199052,RI_chr3R_17198803_17199019,RI_chr3R_17198803_17199052 chr3R - chr3R_17181280_17200781 chr3R_17181279_17181280;chr3R_17200781_17200782 chr3R_17181180_17181279;chr3R_17200782_17200881 0.00 NA 4.55 0.00 0.00 NA NA 9.09 0.00 NA NA 3.12 0.00 NA 0.00 0.00 NA 0.00 5.56 2.86 NA NA NA 11.11 NA 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 2.86 6.67 9.68 6.67 NA NA 0.00 0.00 8.70 9.09 0.00 NA NA NA NA NA 0.00 NA 0.00 K cassette bif,I_chrX_11581793_11583233 chrX + chrX_11578288_11583233 chrX_11578288_11581494;chrX_11581669_11583233 chrX_11581495_11581668 chrX_11578188_11578287;chrX_11583234_11583333 99.76 100.00 99.60 99.05 100.00 99.59 97.33 100.00 99.82 99.33 99.54 99.76 100.00 100.00 100.00 99.64 100.00 99.56 99.53 100.00 100.00 99.72 99.75 100.00 99.58 99.56 99.69 100.00 98.40 99.57 100.00 100.00 99.30 99.71 100.00 99.60 100.00 99.68 100.00 100.00 98.01 100.00 100.00 100.00 99.04 100.00 99.62 100.00 99.78 100.00 100.00 99.47 99.48 100.00 99.64 99.64 100.00 99.48 K intron_retention Eaf,RI_chr2R_3294566_3294636,I_chr2R_3294566_3294656,RI_chr2R_3294566_3294714,I_chr2R_3294566_3295255,I_chr2R_3294591_3295244 chr2R - chr2R_3294566_3294634 chr2R_3294565_3294566;chr2R_3294634_3294635 chr2R_3294491_3294565;chr2R_3294635_3295326 87.87 NA NA 100.00 NA NA 90.91 93.33 78.95 NA NA 88.24 NA 88.89 81.82 94.44 88.89 87.50 NA 80.00 66.67 82.35 81.25 92.31 88.89 91.67 92.31 75.00 78.57 85.71 66.67 72.73 66.67 90.91 88.89 94.74 90.91 100.00 77.78 94.74 92.31 76.47 NA 91.67 NA 63.64 NA 77.27 65.00 NA 81.82 NA NA NA 90.91 NA NA 66.67 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2393243 chrX_2387249_2389073;chrX_2389272_2390808;chrX_2390959_2391350;chrX_2391522_2393243 chrX_2389074_2389271;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2393244_2393291 0.00 NA NA NA NA NA NA NA NA NA NA 2.70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention sta,E_chrX_1376435_1376729,snoRNA:M,snoRNA:Me28S-G980 chrX - chrX_1376514_1376705 chrX_1376513_1376514;chrX_1376705_1376706 chrX_1375828_1376513;chrX_1376706_1376891 0.12 0.07 0.18 0.11 0.10 0.11 0.13 0.15 0.12 0.14 0.06 0.12 0.06 0.20 0.16 0.20 0.13 0.17 0.15 0.16 0.06 0.22 0.08 0.09 0.09 0.17 0.24 0.80 0.10 0.09 0.11 0.11 0.17 0.11 0.11 0.12 0.08 0.09 0.07 0.12 0.17 0.17 0.16 0.06 0.10 0.13 0.08 0.12 0.23 0.17 0.09 0.11 0.13 0.09 0.16 0.06 0.12 0.31 K intron_retention I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17183481_17200781,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781 chr3R - chr3R_17190368_17190435 chr3R_17190367_17190368;chr3R_17190435_17190436 chr3R_17190342_17190367;chr3R_17190436_17190672 0.00 0.00 0.00 6.45 0.00 6.67 0.00 2.70 3.92 NA 4.35 4.55 0.00 0.00 3.23 0.00 0.00 11.11 0.00 4.84 5.00 6.67 0.00 4.55 0.00 0.00 2.56 0.00 0.00 3.70 1.23 6.06 7.69 5.13 0.00 8.00 2.27 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 K alternative_acceptor veg,I_chr2R_12845291_12845765 chr2R + chr2R_12843183_12843248 chr2R_12843183_12843242 chr2R_12843138_12843182;chr2R_12843249_12844801 93.75 91.67 100.00 92.86 90.00 86.67 90.00 93.75 100.00 100.00 77.78 95.24 NA 91.67 93.33 80.95 88.89 100.00 87.50 84.62 90.91 81.82 90.91 83.33 90.91 NA 94.74 100.00 100.00 100.00 94.12 100.00 93.33 100.00 100.00 100.00 95.24 100.00 94.12 92.86 91.67 96.15 90.91 94.74 91.67 96.15 100.00 93.75 100.00 100.00 96.15 93.33 100.00 90.00 93.33 93.75 94.44 93.75 K intron_retention CG8949,I_chrX_16971474_16971708,I_chrX_16971501_16971713 chrX - chrX_16971474_16971708 chrX_16971473_16971474;chrX_16971708_16971709 chrX_16971401_16971473;chrX_16971709_16971808 96.66 NA NA NA NA NA NA 93.33 92.31 NA NA 87.50 NA NA NA 100.00 NA NA NA 80.00 NA 100.00 100.00 NA NA NA 100.00 NA 100.00 NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA 72.73 NA 90.91 NA NA NA NA 88.89 NA 100.00 NA NA NA 90.00 NA NA NA K jcn_only_AD CG3287,I_chr2R_2698891_2699406,I_chr2R_2700203_2700285 chr2R + chr2R_2698681_2699406;chr2R_2699349_2699406;chr2R_2698654_2699406 chr2R_2698891_2699406 chr2R_2699407_2699506;chr2R_2698533_2698653 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.61 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.62 2.00 0.00 0.00 0.00 0.00 1.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 2.17 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Taf1,I_chr3R_2473463_2473515 chr3R + chr3R_2473324_2473515 chr3R_2473463_2473515 chr3R_2473516_2473615;chr3R_2473016_2473323 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 K intron_retention CG31720,F_chr2L_10234951_10235484 chr2L - chr2L_10236287_10236374 chr2L_10236286_10236287;chr2L_10236374_10236375 chr2L_10236031_10236286;chr2L_10236375_10236547 19.64 NA NA NA NA NA NA 25.00 11.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA K cassette alpha-Cat,I_chr3L_23319861_23321813,I_chr3L_23327841_23328002 chr3L - chr3L_23319861_23321813 chr3L_23319861_23320593;chr3L_23320746_23321813 chr3L_23320594_23320745 chr3L_23319830_23319860;chr3L_23321814_23321913 100.00 100.00 100.00 96.97 100.00 100.00 99.15 99.32 99.40 93.33 100.00 97.62 98.46 100.00 100.00 99.25 100.00 98.08 98.99 97.58 100.00 97.06 100.00 100.00 100.00 100.00 98.53 100.00 88.89 96.77 98.94 96.77 92.59 100.00 100.00 97.56 100.00 97.14 100.00 100.00 100.00 99.22 100.00 100.00 95.45 100.00 98.18 100.00 99.30 98.55 100.00 97.30 100.00 100.00 100.00 100.00 98.41 97.50 N jcn_only_AD CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4987241_4987906;chr2L_4987319_4987906 chr2L_4987298_4987906 chr2L_4987907_4988048;chr2L_4987159_4987240 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.58 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CDase chr3R + chr3R_26286512_26288536;chr3R_26286617_26288536;chr3R_26286611_26288536;chr3R_26286631_26288536 chr3R_26286613_26288536 chr3R_26288537_26288691;chr3R_26286221_26286511 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.56 NA NA 16.67 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Hel25E,I_chr2L_5540301_5540396 chr2L - chr2L_5540301_5540971;chr2L_5540301_5540396 chr2L_5540301_5540424 chr2L_5540201_5540300;chr2L_5540972_5541090 2.07 1.39 1.76 1.37 1.18 1.34 1.36 1.28 0.78 5.91 0.77 1.31 0.61 0.93 0.98 1.76 1.97 1.63 0.95 0.92 1.08 4.85 3.01 2.86 3.79 0.47 5.94 4.32 3.88 1.77 7.99 5.86 5.41 1.43 2.69 3.94 2.92 2.90 3.61 3.48 10.85 1.84 1.83 6.27 6.15 5.03 3.27 14.40 1.42 2.07 3.01 2.04 3.35 2.72 0.91 3.18 2.01 6.10 K intron_retention CG14741 chr3R - chr3R_7895644_7895706 chr3R_7895643_7895644;chr3R_7895706_7895707 chr3R_7894835_7895643;chr3R_7895707_7895823 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.69 0.00 0.00 0.00 0.00 1.18 6.06 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2629527_2629921 chr3L_2629526_2629527;chr3L_2629921_2629922 chr3L_2629427_2629526;chr3L_2629922_2630021 89.87 98.00 88.24 92.54 88.71 85.92 92.22 89.29 93.14 95.83 100.00 91.95 96.55 95.00 82.61 90.05 93.55 91.18 90.62 86.34 98.46 NA 89.06 87.72 93.33 88.30 93.85 100.00 81.82 88.24 85.71 88.24 96.49 91.49 75.86 91.89 92.59 89.74 94.55 92.41 86.96 89.61 95.31 84.62 80.95 86.57 83.33 87.77 88.42 88.57 89.55 92.16 85.19 88.89 90.00 95.65 92.31 82.76 K jcn_only_AA CG12428,I_chr3R_23531574_23532266 chr3R - chr3R_23531574_23531981 chr3R_23531627_23531981 chr3R_23531982_23531987;chr3R_23531474_23531573 7.04 NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA 4.55 NA 9.52 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG6236 chr3R - chr3R_11153785_11153849;chr3R_11153785_11153869 chr3R_11153785_11153876 chr3R_11153649_11153784;chr3R_11153877_11153988 59.26 56.25 61.11 60.71 42.31 53.66 59.70 59.46 54.32 58.46 59.09 51.13 33.33 35.00 71.88 64.71 NA 57.69 60.00 57.38 41.67 44.92 67.29 64.71 57.78 32.00 68.14 60.29 56.18 63.25 51.22 66.36 62.04 56.36 61.11 59.42 62.37 62.39 60.00 62.63 58.25 63.20 43.33 65.31 57.78 60.00 64.00 55.66 55.28 65.00 62.04 52.73 50.00 54.24 51.22 62.50 71.58 45.83 K intron_retention CG14642,CG34305 chr3R - chr3R_66855_66974 chr3R_66854_66855;chr3R_66974_66975 chr3R_66767_66854;chr3R_66975_67420 21.43 31.58 41.18 55.56 29.41 25.00 56.00 34.88 34.55 NA 27.78 50.00 7.14 42.86 25.00 41.18 28.57 6.67 33.33 22.73 9.52 0.00 38.10 19.05 NA 30.77 10.53 NA 14.29 9.52 12.26 7.41 0.00 27.78 18.18 NA 12.50 NA 11.11 20.00 16.67 21.43 30.77 16.67 12.12 23.81 19.44 13.04 39.13 14.58 5.88 6.67 NA 15.38 25.00 21.05 28.57 22.73 K intron_retention RpL3,E_chr3R_7047964_7050565,snoRNA:Me18S-C1096,I_chr3R_7049970_7050189 chr3R + chr3R_7048090_7048282 chr3R_7048089_7048090;chr3R_7048282_7048283 chr3R_7047897_7048089;chr3R_7048283_7048451 0.00 0.00 0.00 0.02 0.00 0.00 0.03 0.00 0.03 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.01 0.01 0.05 0.00 0.08 0.22 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.01 0.04 0.00 0.00 0.00 0.00 0.01 0.08 0.00 0.00 0.00 0.05 0.01 0.00 0.05 0.04 0.00 0.00 0.01 0.00 0.11 K intron_retention KdelR,CG5188 chr2L + chr2L_10427004_10427075 chr2L_10427003_10427004;chr2L_10427075_10427076 chr2L_10426867_10427003;chr2L_10427076_10428159 2.45 0.69 1.43 3.39 2.98 2.16 2.96 2.41 2.95 1.84 2.63 2.17 2.68 3.08 3.09 2.37 4.02 3.16 2.16 3.16 1.45 2.01 1.86 2.20 2.02 3.27 8.55 18.59 7.36 2.41 2.85 2.05 3.01 3.82 4.17 3.14 2.60 0.76 2.24 1.57 3.45 2.45 2.04 2.41 3.11 2.20 0.69 4.26 3.40 2.92 1.37 0.00 2.88 1.12 2.14 2.54 2.14 1.35 N intron_retention lig,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3963954_3964374 chr2R_3963953_3963954;chr2R_3964374_3964375 chr2R_3963798_3963953;chr2R_3964375_3964611 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 52.17 NA 100.00 100.00 NA NA 100.00 57.14 NA 50.00 66.67 100.00 100.00 NA 53.85 41.51 100.00 100.00 NA 100.00 50.00 100.00 100.00 35.71 64.00 100.00 62.50 68.97 100.00 100.00 NA 55.17 37.50 43.75 46.15 50.00 100.00 53.33 46.15 46.15 NA 35.71 100.00 100.00 NA NA N intron_retention Pmi,PGRP-LD chr3L + chr3L_5775409_5775724 chr3L_5775408_5775409;chr3L_5775724_5775725 chr3L_5775097_5775408;chr3L_5775725_5775759 100.00 100.00 100.00 100.00 100.00 100.00 72.73 100.00 80.85 100.00 100.00 74.19 58.82 100.00 100.00 100.00 100.00 100.00 100.00 76.32 100.00 64.29 55.56 100.00 100.00 54.17 100.00 NA 100.00 100.00 57.45 100.00 46.67 100.00 100.00 100.00 100.00 100.00 100.00 68.18 NA 75.61 100.00 100.00 100.00 100.00 100.00 NA 63.64 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.19 100.00 K intron_retention chico,I_chr2L_10246534_10246899 chr2L - chr2L_10246040_10246899 chr2L_10246039_10246040;chr2L_10246899_10246900 chr2L_10245878_10246039;chr2L_10246900_10246999 10.71 7.69 16.22 10.26 12.50 22.73 16.67 15.79 11.32 NA 10.53 12.24 13.79 18.52 14.29 10.42 11.76 15.38 6.67 14.55 14.29 13.79 8.16 7.14 15.00 17.39 10.71 7.41 30.00 3.23 11.76 10.53 12.50 17.07 14.29 9.68 6.25 6.06 6.06 5.36 NA 10.53 13.64 13.95 0.00 9.09 9.09 6.67 14.00 7.41 5.13 9.09 8.33 0.00 17.65 0.00 9.52 11.54 K intron_retention Vha100-1,I_chr3R_24958227_24960770,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24959684_24960770 chr3R_24959683_24959684;chr3R_24960770_24960771 chr3R_24959583_24959683;chr3R_24960771_24960870 16.13 12.90 NA NA 11.76 30.77 38.10 NA 16.00 7.14 NA 50.00 NA NA 6.25 38.46 NA 33.33 NA 15.79 18.75 48.00 14.63 13.46 25.81 NA 17.24 26.67 11.11 18.52 30.77 NA 9.68 21.43 16.13 22.73 11.54 13.16 11.54 16.13 20.00 11.76 NA 23.81 20.00 23.08 6.67 41.67 15.15 15.79 18.00 20.00 10.53 12.90 20.00 7.69 14.71 NA K alternative_donor CG2310,I_chr3R_25318474_25319142 chr3R - chr3R_25318474_25319136;chr3R_25318474_25319163;chr3R_25318474_25319142;chr3R_25318474_25318925;chr3R_25318474_25319093;chr3R_25318474_25318971;chr3R_25318474_25319167 chr3R_25318474_25319004 chr3R_25318374_25318473;chr3R_25319168_25319224 1.79 2.73 1.76 2.08 0.60 2.07 4.17 2.30 1.85 2.36 1.79 1.99 1.08 0.82 1.67 2.88 0.77 2.11 2.08 1.45 3.55 2.26 2.68 1.75 1.00 1.30 1.78 3.57 5.04 0.53 3.23 2.78 1.75 0.98 0.60 2.26 1.02 1.68 1.40 0.59 5.17 1.02 2.21 1.59 0.92 2.60 1.90 4.72 1.72 2.07 2.89 2.29 1.02 1.68 1.69 0.85 1.18 3.19 K intron_retention Pvr,I_chr2L_8226604_8228082,I_chr2L_8229001_8230124,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8226607_8226928 chr2L_8226606_8226607;chr2L_8226928_8226929 chr2L_8226458_8226606;chr2L_8226929_8226955 50.00 30.00 51.22 96.00 46.67 76.67 47.62 63.41 62.07 29.63 83.33 50.67 85.19 72.41 70.27 58.33 61.29 48.00 65.71 30.87 88.89 71.43 38.18 38.89 55.56 48.15 51.35 NA 33.33 48.28 40.00 53.85 41.67 51.11 37.04 51.52 36.11 35.90 50.00 45.07 46.67 49.25 52.38 20.97 50.00 32.00 41.67 48.28 55.56 88.89 50.00 38.10 33.33 36.36 55.26 34.62 NA 57.89 K jcn_only_AA mod(r),I_chrX_515823_515874,RI_chrX_515831_515923,I_chrX_516392_517480 chrX + chrX_515831_515874;chrX_515831_515923 chrX_515831_515885 chrX_515763_515830;chrX_515924_515974 23.98 20.51 32.00 27.03 23.08 34.38 16.67 22.22 24.62 40.00 7.14 28.07 32.35 37.04 19.23 27.08 NA 15.38 19.51 29.03 9.38 30.77 31.37 37.93 33.33 26.67 32.26 20.00 29.63 28.00 18.00 28.57 NA 21.28 NA 20.83 16.33 20.00 16.33 21.43 NA 22.03 23.33 21.95 9.52 37.25 25.58 NA 38.18 11.76 32.26 17.86 27.27 20.00 32.14 26.32 20.69 13.33 K intron_retention CG31716,I_chr2L_10397648_10398034 chr2L + chr2L_10398750_10399316 chr2L_10398749_10398750;chr2L_10399316_10399317 chr2L_10398742_10398749;chr2L_10399317_10399535 3.97 NA 0.00 15.91 NA NA 5.56 5.56 9.09 NA NA 0.00 20.00 NA 18.75 0.00 0.00 NA 0.00 2.94 NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA 5.00 NA NA NA NA 12.50 NA 7.14 NA NA NA NA 20.00 NA 0.00 NA NA NA 9.09 NA NA NA K jcn_only_AA Uch,CG10880 chr2L - chr2L_2213757_2213895 chr2L_2213781_2213895 chr2L_2213896_2213958;chr2L_2213616_2213756 0.00 0.00 0.00 0.00 1.71 0.00 0.55 0.00 0.32 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.42 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.41 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.00 K alternative_acceptor CG17494 chr2L + chr2L_22471985_22472552;chr2L_22471985_22472618 chr2L_22471985_22472623 chr2L_22471978_22471984;chr2L_22472624_22473865 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 2.94 0.00 0.82 0.00 2.78 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.91 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.75 1.67 0.00 0.00 0.00 0.00 0.66 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32666 chrX + chrX_11444971_11445061 chrX_11444970_11444971;chrX_11445061_11445062 chrX_11444795_11444970;chrX_11445062_11445380 0.00 0.00 0.00 4.17 0.00 0.00 2.27 2.13 4.44 0.00 0.00 2.56 0.00 2.94 0.00 8.00 0.00 4.00 0.00 2.44 5.26 0.00 2.15 0.00 2.08 0.00 0.00 0.00 0.00 0.00 3.51 0.00 0.00 0.00 4.92 0.00 0.74 0.00 0.00 0.00 0.00 2.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention B4,REI_chr2L_13509793_13534906,EI_chr2L_13513471_13534906,I_chr2L_13513474_13549131,CG15638,CG9263,I_chr2L_13547133_13549131,I_chr2L_13547162_13547692,I_chr2L_13547304_13549131 chr2L - chr2L_13513474_13534906 chr2L_13513473_13513474;chr2L_13534906_13534907 chr2L_13513374_13513473;chr2L_13534907_13535006 5.88 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 5.88 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention lola,I_chr2R_6419625_6419686,I_chr2R_6421474_6421644,RI_chr2R_6421474_6421652,I_chr2R_6421474_6422304,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354,psnoRNA:lola-a,psnoRNA:lola-b,psnoRNA:lola-c,psnoRNA:lola-d chr2R - chr2R_6421474_6422354 chr2R_6421473_6421474;chr2R_6422354_6422355 chr2R_6421381_6421473;chr2R_6422355_6422404 1.19 1.19 1.23 1.69 0.00 1.27 1.48 2.13 1.88 0.00 0.00 0.00 3.03 0.00 1.69 0.60 2.11 1.41 0.87 1.49 0.00 1.61 1.42 0.00 0.00 0.00 2.30 4.88 0.71 1.37 2.08 1.92 0.69 2.62 2.44 0.00 0.00 0.00 0.00 2.25 1.15 2.59 1.15 1.98 0.00 2.02 0.00 0.45 1.33 0.00 1.47 1.67 0.00 0.00 0.95 1.54 0.00 0.00 K alternative_acceptor unc-13,I_chr4_897077_897142,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_897077_897142 chr4_897081_897142 chr4_897143_897242;chr4_896977_897076 100.00 91.67 100.00 100.00 100.00 90.00 95.45 96.30 97.14 NA 100.00 96.77 100.00 92.86 92.31 95.00 100.00 88.89 93.75 100.00 NA 95.35 100.00 100.00 100.00 94.74 100.00 NA NA 90.91 95.45 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 92.86 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 NA NA NA 94.12 NA 88.89 NA K intron_retention asrij,MED23 chr2R + chr2R_18774226_18774281 chr2R_18774225_18774226;chr2R_18774281_18774282 chr2R_18774085_18774225;chr2R_18774282_18774771 2.70 3.51 0.00 6.82 2.27 3.85 6.25 2.94 2.27 2.70 0.00 0.00 3.45 0.00 7.58 3.57 0.00 0.00 0.00 5.63 4.17 8.22 3.57 0.88 0.00 2.86 4.00 6.90 5.15 2.25 1.54 3.39 0.00 0.00 0.00 0.00 2.92 0.80 1.51 1.72 0.00 0.93 2.17 0.00 9.26 2.73 2.38 0.00 3.85 3.67 2.73 3.39 3.77 4.29 3.23 2.34 1.06 2.70 K jcn_only_AA CG5455,I_chr3R_22287369_22288750 chr3R + chr3R_22292793_22292859;chr3R_22292793_22292855 chr3R_22292793_22292853 chr3R_22292336_22292792;chr3R_22292860_22293068 100.00 100.00 100.00 97.56 NA 100.00 100.00 100.00 98.18 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 97.14 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 NA 100.00 100.00 97.87 100.00 98.75 96.77 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG14949 chr3L - chr3L_2642192_2642240 chr3L_2642191_2642192;chr3L_2642240_2642241 chr3L_2642123_2642191;chr3L_2642241_2642302 100.00 NA NA NA NA NA NA NA 92.86 100.00 NA 100.00 NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA K jcn_only_AD fws,CG6453 chr2L - chr2L_17480920_17480972;chr2L_17480920_17481149;chr2L_17480920_17480983 chr2L_17480920_17480968 chr2L_17480825_17480919;chr2L_17481150_17481199 36.36 35.00 NA NA 44.44 NA 44.44 35.14 35.56 NA NA 40.74 NA NA 45.45 NA NA NA 40.00 35.48 NA NA NA NA NA NA NA NA NA NA NA NA NA 34.21 NA NA 36.36 NA NA NA NA 34.29 NA NA NA NA NA NA 41.38 NA NA NA NA NA NA NA NA NA K intron_retention ssh,I_chr3R_20769244_20770111 chr3R - chr3R_20769244_20769311 chr3R_20769243_20769244;chr3R_20769311_20769312 chr3R_20769144_20769243;chr3R_20769312_20769439 17.65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 17.65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Pect,I_chr2L_13207997_13208109 chr2L + chr2L_13204273_13208109 chr2L_13204272_13204273;chr2L_13208109_13208110 chr2L_13203768_13204272;chr2L_13208110_13208209 0.70 1.28 0.73 1.25 0.00 0.69 0.73 1.37 1.29 0.00 0.30 1.22 0.39 0.32 1.64 0.86 0.65 0.60 0.58 1.06 0.30 1.82 0.47 1.19 0.72 0.88 0.85 0.39 0.73 0.45 0.88 0.29 0.70 0.94 0.00 1.71 0.38 0.00 0.43 0.56 0.26 0.87 1.16 0.77 0.69 0.50 0.00 0.98 1.02 0.00 0.59 0.00 0.00 1.06 0.99 0.38 0.76 0.89 K alternative_acceptor I_chr3L_834336_834491,CG13887,Gr61a chr3L + chr3L_837946_838048;chr3L_837946_838012 chr3L_837946_838021 chr3L_837877_837945;chr3L_838049_838624 7.14 6.82 10.42 9.43 7.14 6.38 7.27 6.61 6.72 3.57 9.52 10.11 10.81 10.42 15.69 4.96 5.71 4.76 6.12 6.94 7.41 4.48 11.54 8.70 11.11 11.32 13.16 7.69 3.85 0.00 4.76 3.17 3.08 7.76 8.70 12.20 3.03 13.89 8.33 5.61 5.98 6.31 5.13 7.25 2.42 5.56 22.22 4.39 4.76 14.29 10.53 8.20 7.14 18.18 9.76 6.82 5.56 3.64 K intron_retention CG11247,I_chr3L_21718596_21718659 chr3L - chr3L_21721493_21721550 chr3L_21721492_21721493;chr3L_21721550_21721551 chr3L_21721387_21721492;chr3L_21721551_21721574 95.00 94.74 95.00 96.67 100.00 95.45 91.43 97.50 97.62 NA 100.00 96.43 100.00 95.83 100.00 94.29 100.00 87.50 96.43 90.00 94.12 92.31 93.75 85.71 94.12 96.55 92.59 94.44 92.86 91.67 91.43 NA 94.44 93.33 94.12 92.31 100.00 94.44 96.43 96.67 NA 97.44 100.00 100.00 NA 94.12 93.75 93.33 97.73 94.44 100.00 100.00 93.75 92.31 96.00 100.00 100.00 100.00 K multi_cassette shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9758417_9759483 chr2R_9758417_9758798;chr2R_9758844_9759170;chr2R_9759231_9759483 chr2R_9758799_9758843;chr2R_9759171_9759230 chr2R_9758345_9758416;chr2R_9759484_9759658 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.18 100.00 100.00 100.00 99.05 100.00 100.00 100.00 98.81 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor glo,I_chr3R_7644679_7644739,REI_chr3R_7644679_7644932,RI_chr3R_7644683_7644880,I_chr3R_7647556_7647628 chr3R - chr3R_7644679_7644932 chr3R_7644683_7644932 chr3R_7644933_7644980;chr3R_7644583_7644678 98.17 100.00 96.55 100.00 100.00 95.65 96.88 100.00 98.00 92.86 100.00 98.15 100.00 96.00 100.00 100.00 91.67 NA 96.30 96.69 100.00 98.31 98.18 95.83 100.00 100.00 97.92 97.62 95.45 100.00 97.22 100.00 95.00 97.83 96.67 97.44 100.00 100.00 96.67 98.44 100.00 98.08 100.00 97.87 96.00 97.44 100.00 98.18 98.33 96.43 97.06 100.00 100.00 100.00 94.74 100.00 100.00 96.55 K alternative_acceptor I_chr2L_822032_822857,dock chr2L + chr2L_826508_829456;chr2L_826508_829421 chr2L_826508_829304 chr2L_826008_826507;chr2L_829457_829468 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 97.67 100.00 100.00 96.15 100.00 100.00 100.00 97.62 100.00 94.74 100.00 100.00 100.00 100.00 100.00 K intron_retention CG3499,I_chr2R_18772777_18772819 chr2R - chr2R_18772767_18772819 chr2R_18772766_18772767;chr2R_18772819_18772820 chr2R_18772677_18772766;chr2R_18772820_18772879 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4433,I_chr3R_15845478_15846094 chr3R - chr3R_15845478_15846069 chr3R_15845477_15845478;chr3R_15846069_15846070 chr3R_15845378_15845477;chr3R_15846070_15847038 1.98 0.00 2.33 3.64 2.35 3.45 3.57 3.03 1.10 1.43 2.90 2.65 11.32 0.00 2.97 1.54 1.43 3.80 2.50 2.14 3.90 2.97 0.00 1.49 2.11 0.00 1.61 3.88 2.68 2.00 0.00 7.55 4.60 1.98 3.08 1.43 1.37 1.35 1.57 1.94 0.00 1.80 0.00 0.00 2.70 2.22 0.00 3.64 1.94 0.00 1.52 0.00 0.00 2.08 2.65 0.94 1.94 3.57 K alternative_acceptor Rnp4F,I_chrX_5214525_5214591 chrX - chrX_5216487_5216663 chrX_5216583_5216663 chrX_5216664_5216731;chrX_5216423_5216486 33.48 NA NA NA NA NA NA 46.67 47.83 NA 35.71 22.22 NA NA NA 18.18 NA NA 27.27 31.25 NA NA NA NA NA NA NA NA NA NA 30.00 NA NA 46.15 NA NA NA NA 27.27 NA NA 60.00 NA 30.00 NA NA NA NA 35.71 NA NA NA NA NA 44.44 NA NA NA K alternative_acceptor CLIP-190,I_chr2L_17394493_17404060,I_chr2L_17401291_17404060,I_chr2L_17401582_17402303 chr2L + chr2L_17384840_17385443 chr2L_17384840_17385225 chr2L_17384808_17384839;chr2L_17385444_17385495 100.00 100.00 100.00 85.71 NA NA 100.00 100.00 91.67 NA NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K intron_retention CG15609,C_chr2R_12899322_12900789,I_chr2R_12902708_12903184 chr2R - chr2R_12901233_12901293 chr2R_12901232_12901233;chr2R_12901293_12901294 chr2R_12901051_12901232;chr2R_12901294_12901489 0.00 0.00 0.00 5.80 0.00 0.00 2.17 0.00 1.60 0.00 2.44 0.95 0.00 0.00 1.41 0.00 0.00 0.00 0.00 1.52 0.00 15.62 0.00 0.00 10.87 8.77 3.57 0.00 2.22 5.26 6.25 6.45 2.78 2.35 0.00 3.03 0.00 0.00 0.00 1.06 5.41 0.00 0.00 0.00 0.00 1.72 0.00 1.23 1.90 0.00 0.00 2.13 0.00 0.00 0.00 2.86 0.00 0.00 K intron_retention Aats-ile chr3L + chr3L_22281816_22281894 chr3L_22281815_22281816;chr3L_22281894_22281895 chr3L_22281762_22281815;chr3L_22281895_22282039 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 100.00 96.15 96.67 95.45 95.24 100.00 97.87 100.00 100.00 100.00 100.00 96.30 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 95.45 100.00 93.75 100.00 100.00 97.06 100.00 100.00 NA 100.00 100.00 100.00 97.78 NA 100.00 100.00 100.00 NA 95.24 100.00 NA 100.00 K intron_retention Ets21C,rempA chr2L - chr2L_548219_551157 chr2L_548218_548219;chr2L_551157_551158 chr2L_547978_548218;chr2L_551158_552527 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA 4.55 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA K intron_retention robl chr2R + chr2R_13344221_13344288 chr2R_13344220_13344221;chr2R_13344288_13344289 chr2R_13344148_13344220;chr2R_13344289_13344637 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.34 0.00 0.00 0.30 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14801,I_chrX_1721454_1737724 chrX + chrX_1737612_1737724 chrX_1737611_1737612;chrX_1737724_1737725 chrX_1737478_1737611;chrX_1737725_1737824 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 3.85 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA K jcn_only_AA pxb,I_chr3R_11504971_11505107 chr3R + chr3R_11504971_11510791 chr3R_11504971_11505107 chr3R_11504871_11504970;chr3R_11510792_11511026 15.38 20.00 25.71 2.33 4.00 NA 17.02 12.82 13.46 NA 47.83 40.24 13.64 25.00 25.71 11.90 14.29 26.83 NA 35.92 40.62 5.88 16.00 16.00 15.00 0.00 26.92 14.81 24.32 6.67 13.51 NA 7.14 20.00 22.58 2.63 7.14 33.33 11.63 20.00 3.70 10.20 13.64 15.38 35.90 9.62 35.71 8.70 14.81 14.29 11.11 7.69 38.10 21.62 23.08 32.35 26.32 29.27 K cassette I_chr3L_12398261_12403200,Gap69C chr3L - chr3L_12408970_12409374 chr3L_12408970_12409044;chr3L_12409105_12409374 chr3L_12409045_12409104 chr3L_12408095_12408969;chr3L_12409375_12409579 95.00 96.30 96.30 97.56 95.65 100.00 84.38 92.59 93.10 83.33 100.00 97.62 95.45 100.00 89.29 97.22 100.00 96.30 100.00 98.46 95.83 74.07 87.27 89.80 95.24 85.71 87.76 90.32 75.00 88.57 96.30 95.45 95.00 97.14 95.24 69.44 94.74 96.00 89.80 92.16 92.00 92.00 94.74 83.33 79.49 97.37 96.97 95.00 100.00 93.62 97.44 96.15 85.29 94.44 96.97 92.11 92.73 84.85 K intron_retention CG12883 chr3R + chr3R_23505153_23505222 chr3R_23505152_23505153;chr3R_23505222_23505223 chr3R_23504917_23505152;chr3R_23505223_23506084 0.00 NA NA 0.00 NA NA 0.00 5.88 0.00 NA NA NA NA NA NA NA NA NA NA 13.04 NA 10.53 NA NA NA NA 27.78 NA NA NA 0.00 NA NA NA NA NA 0.00 0.00 0.00 13.64 NA 0.00 NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA 0.00 0.00 K alternative_acceptor CG17233,I_chr3L_20232803_20232962,RI_chr3L_20232898_20232962 chr3L - chr3L_20232714_20232962;chr3L_20232645_20232962;chr3L_20232711_20232962 chr3L_20232648_20232962 chr3L_20232963_20233016;chr3L_20232147_20232644 6.67 12.50 8.33 7.69 13.33 15.38 4.55 3.45 8.00 0.00 5.56 5.71 0.00 13.33 9.52 4.55 0.00 6.67 14.29 19.51 0.00 0.00 10.81 11.54 7.14 0.00 0.00 6.25 0.00 4.00 8.33 0.00 8.00 3.33 6.67 12.00 5.71 7.14 13.33 3.70 15.38 5.26 7.69 13.64 6.25 4.55 21.43 4.35 2.44 4.76 11.43 10.53 4.35 14.29 5.00 10.53 0.00 8.33 K intron_retention slgA,I_chrX_21247694_21251677,I_chrX_21251760_21251908,I_chrX_21253735_21253820 chrX + chrX_21251765_21251908 chrX_21251764_21251765;chrX_21251908_21251909 chrX_21251678_21251764;chrX_21251909_21252008 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 4.17 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 K intron_retention CG11874 chr3R - chr3R_24936599_24936656 chr3R_24936598_24936599;chr3R_24936656_24936657 chr3R_24936411_24936598;chr3R_24936657_24936997 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 NA 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 4.17 0.00 0.00 NA 0.00 1.67 0.00 0.00 0.00 K intron_retention Cdep,I_chr3R_749200_749265 chr3R + chr3R_768511_770696 chr3R_768510_768511;chr3R_770696_770697 chr3R_768024_768510;chr3R_770697_771202 0.00 0.00 0.00 1.15 0.00 0.00 1.43 0.00 1.23 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.08 1.40 1.57 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.86 0.00 0.00 0.00 1.72 0.72 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention MSBP,RI_chrX_15783766_15784064,I_chrX_15783766_15785978 chrX - chrX_15782530_15783334 chrX_15782529_15782530;chrX_15783334_15783335 chrX_15782377_15782529;chrX_15783335_15783738 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Eb1,I_chr2R_2642491_2642549 chr2R + chr2R_2642623_2642689 chr2R_2642632_2642689 chr2R_2642690_2643135;chr2R_2642550_2642622 1.85 0.99 0.00 1.98 3.31 2.07 2.32 1.99 1.44 0.00 1.32 2.34 1.16 1.21 2.38 1.88 2.98 1.05 1.58 1.22 0.55 2.40 2.18 1.12 2.23 1.57 3.60 6.74 4.89 2.00 2.35 2.08 2.17 1.85 3.26 1.75 1.18 2.53 3.06 1.23 0.61 1.98 0.64 1.81 1.81 1.84 2.34 2.20 1.85 1.18 1.50 2.23 2.67 1.63 1.14 1.74 1.23 1.85 K intron_retention CG13893,I_chr3L_600913_601954 chr3L - chr3L_599627_599687 chr3L_599626_599627;chr3L_599687_599688 chr3L_599055_599626;chr3L_599688_600482 0.00 0.00 0.00 3.95 1.43 0.00 1.32 0.00 1.31 0.00 0.00 1.06 0.00 0.00 0.00 1.43 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 1.75 1.68 0.00 0.00 1.11 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 K alternative_acceptor CG31619 chr2L + chr2L_21711411_21712789 chr2L_21711411_21712768 chr2L_21711315_21711410;chr2L_21712790_21712966 98.44 97.78 100.00 95.06 97.44 95.24 100.00 98.33 94.00 95.24 NA 99.00 100.00 100.00 97.56 98.11 100.00 100.00 97.22 98.82 100.00 95.92 98.61 98.31 100.00 97.73 97.67 100.00 94.12 98.04 94.74 100.00 98.36 95.24 100.00 100.00 97.75 96.36 98.59 98.53 100.00 96.94 97.06 98.78 97.30 97.92 100.00 100.00 98.91 95.24 100.00 100.00 97.62 100.00 100.00 97.06 100.00 100.00 K intron_retention G-salpha60A chr2R + chr2R_19834044_19834123 chr2R_19834043_19834044;chr2R_19834123_19834124 chr2R_19833970_19834043;chr2R_19834124_19834294 0.00 0.00 0.98 1.20 0.00 0.00 1.87 0.54 0.85 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 3.90 0.00 0.96 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 1.31 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 N alternative_acceptor I_chr3L_9481026_9484943,noncoding_11665 chr3L + chr3L_9481349_9481457;chr3L_9481349_9481415 chr3L_9481349_9484943 chr3L_9481282_9481348;chr3L_9484944_9485043 33.33 33.33 NA NA NA 100.00 NA 50.00 NA NA 0.00 NA NA NA NA 100.00 NA 0.00 NA NA 0.00 33.33 NA NA NA NA NA NA NA 33.33 50.00 33.33 NA NA NA NA NA 33.33 NA 16.67 NA NA NA 33.33 NA NA 33.33 33.33 NA 100.00 33.33 NA 33.33 NA NA NA 33.33 NA K intron_retention Ptpmeg,I_chr3L_353688_353782,I_chr3L_355125_355175 chr3L + chr3L_355125_355198 chr3L_355124_355125;chr3L_355198_355199 chr3L_355057_355124;chr3L_355199_355275 0.47 0.74 0.97 1.38 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 1.02 2.15 0.00 0.00 0.00 1.98 1.02 1.02 0.61 0.00 2.48 0.00 3.47 1.61 0.61 0.69 0.00 0.66 0.58 1.89 0.00 0.00 0.00 0.00 0.77 0.93 1.68 0.47 0.00 1.48 0.00 0.00 0.00 1.20 0.00 0.00 0.56 0.00 1.61 0.00 2.00 1.50 0.00 0.58 K intron_retention RpLP0 chr3L + chr3L_22069442_22069515 chr3L_22069441_22069442;chr3L_22069515_22069516 chr3L_22069348_22069441;chr3L_22069516_22070587 0.09 0.05 0.00 0.13 0.06 0.04 0.11 0.00 0.04 0.00 0.00 0.11 0.00 0.19 0.03 0.07 0.11 0.00 0.00 0.06 0.00 0.15 0.20 0.36 0.30 0.00 0.43 1.66 0.36 0.00 0.06 0.25 0.00 0.03 0.00 0.06 0.27 0.12 0.23 0.16 0.00 0.08 0.05 0.00 0.11 0.18 0.24 0.09 0.15 0.12 0.25 0.20 0.23 0.09 0.07 0.09 0.15 0.26 K intron_retention CG6912 chr3R - chr3R_10962499_10962563 chr3R_10962498_10962499;chr3R_10962563_10962564 chr3R_10962433_10962498;chr3R_10962564_10962631 52.47 57.14 42.11 65.00 NA 33.33 57.14 60.87 56.00 NA 80.00 42.86 57.14 56.25 50.00 60.00 69.23 55.56 33.33 33.33 61.54 42.86 NA 42.11 NA 77.78 52.00 NA NA 45.45 76.92 45.45 52.94 63.64 NA 72.73 61.54 NA 44.44 57.89 73.33 38.71 58.82 50.00 33.33 NA 60.00 41.18 46.15 NA 48.15 87.50 NA 40.00 41.67 46.15 39.29 33.33 K alternative_donor CG3632,RI_chrX_16195880_16196242 chrX + chrX_16190824_16191693;chrX_16190941_16191693 chrX_16190917_16191693 chrX_16191694_16191751;chrX_16190763_16190823 30.77 46.15 42.86 33.33 40.00 31.25 40.62 29.73 27.50 NA 45.45 33.33 25.00 40.00 19.05 25.00 33.33 14.29 31.58 31.43 23.08 25.00 22.73 26.67 30.77 21.43 21.43 25.00 21.43 50.00 36.36 28.57 28.57 24.24 28.57 40.00 23.53 55.56 33.33 46.15 NA 26.32 21.43 30.77 33.33 16.67 30.00 30.77 21.21 42.86 36.84 43.75 37.50 NA 15.79 45.45 23.08 33.33 K jcn_only_AA dre4,I_chr3L_1875215_1875286,I_chr3L_1875590_1875651,F_chr3L_1877432_1877517 chr3L - chr3L_1875215_1875286 chr3L_1875219_1875286 chr3L_1875287_1875386;chr3L_1875115_1875214 100.00 99.47 100.00 99.73 100.00 100.00 100.00 99.54 100.00 100.00 99.28 100.00 100.00 99.52 100.00 99.73 100.00 100.00 100.00 100.00 100.00 100.00 99.68 99.60 100.00 99.24 99.32 100.00 99.11 99.46 99.25 99.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.77 100.00 100.00 100.00 100.00 99.42 100.00 99.78 100.00 100.00 100.00 100.00 100.00 100.00 99.47 99.49 100.00 K alternative_donor Rga,I_chr3R_1436346_1436552,I_chr3R_1436346_1437602,I_chr3R_1436346_1437897,I_chr3R_1437726_1437791,Spec2 chr3R - chr3R_1436346_1436552;chr3R_1436346_1437897 chr3R_1436346_1437791 chr3R_1436246_1436345;chr3R_1437898_1437963 100.00 100.00 100.00 98.75 100.00 100.00 97.44 100.00 99.11 100.00 97.78 99.03 100.00 100.00 100.00 98.72 98.00 97.83 100.00 98.21 98.00 100.00 100.00 98.77 100.00 100.00 98.53 97.22 96.30 98.46 98.21 100.00 100.00 98.81 98.08 100.00 98.51 100.00 98.44 98.23 98.61 99.09 100.00 100.00 100.00 100.00 100.00 100.00 99.07 98.57 98.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Start1,I_chr2R_20463661_20463716 chr2R + chr2R_20463347_20463399 chr2R_20463346_20463347;chr2R_20463399_20463400 chr2R_20463214_20463346;chr2R_20463400_20463533 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA NA 6.25 NA 0.00 0.00 0.00 0.00 NA NA 4.88 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA 4.35 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 K intron_retention DppIII,CG7352 chr3R + chr3R_4170206_4170530 chr3R_4170205_4170206;chr3R_4170530_4170531 chr3R_4170198_4170205;chr3R_4170531_4170745 0.00 NA NA 0.00 NA NA 7.69 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K alternative_donor scrib,I_chr3R_22362324_22363015,I_chr3R_22381374_22399575,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22362120_22363092;chr3R_22362315_22363092;chr3R_22362254_22363092;chr3R_22362224_22363092;chr3R_22362324_22363092;chr3R_22362142_22363092 chr3R_22362244_22363092 chr3R_22363093_22363115;chr3R_22362112_22362119 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG31782,VhaSFD,RI_chr2L_16731891_16731942 chr2L - chr2L_16723898_16724057 chr2L_16724002_16724057 chr2L_16724058_16724171;chr2L_16723138_16723897 0.00 0.00 0.00 0.67 1.41 0.00 1.72 0.00 1.02 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9323 chr2L - chr2L_20755434_20755487 chr2L_20755433_20755434;chr2L_20755487_20755488 chr2L_20755320_20755433;chr2L_20755488_20755880 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 1.41 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 3.45 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette cp309,I_chr3L_15074145_15074432 chr3L - chr3L_15069146_15074432 chr3L_15069146_15074045;chr3L_15074262_15074432 chr3L_15074046_15074261 chr3L_15069020_15069145;chr3L_15074433_15074532 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 97.44 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 95.65 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 K cassette sba chr3R - chr3R_19746569_19748617 chr3R_19746569_19747239;chr3R_19747503_19748617 chr3R_19747240_19747502 chr3R_19745729_19746568;chr3R_19748618_19748681 88.89 75.00 100.00 91.67 87.50 88.89 86.36 96.00 85.19 80.00 100.00 94.44 92.31 100.00 92.31 94.12 90.00 88.89 94.12 92.86 88.89 84.21 92.31 81.82 85.71 100.00 100.00 80.00 66.67 85.71 93.75 75.00 85.71 90.91 100.00 92.86 87.50 83.33 90.00 93.75 100.00 81.48 88.89 90.00 NA 83.33 77.78 75.00 95.45 87.50 100.00 81.82 85.71 80.00 90.91 85.71 NA 83.33 K jcn_only_AD CG3860,I_chr2R_19880382_19880479,I_chr2R_19880401_19880450,RI_chr2R_19882285_19882350 chr2R - chr2R_19880382_19880479 chr2R_19880382_19880450 chr2R_19880314_19880381;chr2R_19880480_19880545 98.86 95.00 100.00 96.30 100.00 100.00 94.34 95.52 97.22 100.00 100.00 100.00 100.00 100.00 97.73 97.37 100.00 100.00 95.00 98.86 96.30 NA 98.41 100.00 96.15 100.00 97.73 100.00 100.00 96.88 97.92 100.00 100.00 98.48 95.83 100.00 96.67 100.00 96.00 95.95 100.00 96.61 NA 100.00 97.37 94.12 97.87 96.97 100.00 93.75 98.04 100.00 96.88 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG4119 chrX + chrX_5560355_5560409;chrX_5560351_5560409 chrX_5560347_5560409 chrX_5560410_5560501;chrX_5560114_5560346 85.00 87.76 NA NA NA NA NA NA 89.47 92.31 NA 92.50 NA NA NA NA 85.00 74.07 NA 91.18 70.00 78.57 92.00 80.00 77.78 NA 88.89 82.50 NA 89.47 NA 83.78 78.57 85.19 91.67 95.00 80.41 87.50 82.81 83.02 91.30 80.85 NA 89.36 81.40 85.71 87.50 80.85 95.45 74.47 85.00 78.79 88.57 82.35 81.48 92.68 84.85 77.27 K alternative_donor RpL35A,I_chr3R_1292099_1292701,I_chr3R_1292125_1292701 chr3R - chr3R_1292731_1292790 chr3R_1292731_1292786 chr3R_1292709_1292730;chr3R_1292791_1292801 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 K jcn_only_AA CG16971,I_chr3L_225856_225909,I_chr3L_225919_225983,RI_chr3L_225919_226004,I_chr3L_229245_230186 chr3L + chr3L_225919_226219;chr3L_225919_226004 chr3L_225919_225983 chr3L_225910_225918;chr3L_226220_226256 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Adar,I_chrX_1668256_1682696,I_chrX_1674594_1674717 chrX + chrX_1672994_1673122 chrX_1672993_1672994;chrX_1673122_1673123 chrX_1672848_1672993;chrX_1673123_1673291 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG8726 chr2R - chr2R_3856982_3857373 chr2R_3856982_3857078;chr2R_3857275_3857373 chr2R_3857079_3857274 chr2R_3856756_3856981;chr2R_3857374_3857681 100.00 100.00 100.00 100.00 96.77 100.00 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 98.48 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.68 100.00 100.00 98.80 100.00 100.00 100.00 100.00 100.00 98.31 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 K alternative_donor AnnIX chr3R + chr3R_16891137_16893167;chr3R_16891124_16893167;chr3R_16891033_16893167 chr3R_16891008_16893167 chr3R_16893168_16893221;chr3R_16890951_16891007 48.80 49.23 70.79 73.73 44.07 69.44 42.67 73.25 47.37 21.74 48.21 57.35 36.84 61.26 74.76 54.02 64.00 65.18 71.04 66.67 48.80 28.99 10.20 2.70 11.43 71.95 17.39 21.05 41.67 46.15 70.28 69.05 84.85 72.88 29.27 27.27 3.85 11.54 14.58 62.32 71.43 68.10 70.54 40.00 80.00 52.78 8.70 75.61 76.24 5.56 13.56 12.50 30.43 11.76 71.95 10.26 10.00 83.72 N alternative_donor CG10353,I_chrX_11775936_11778830,I_chrX_11778617_11778830,RI_chrX_11780885_11780988 chrX - chrX_11775936_11776058;chrX_11775936_11777220;chrX_11775936_11777133;chrX_11775936_11776142 chrX_11775936_11777234 chrX_11775836_11775935;chrX_11777235_11777654 1.35 0.00 0.00 0.00 2.94 0.00 2.00 0.00 1.09 0.00 0.00 0.00 4.35 3.57 0.00 2.04 0.00 0.00 0.00 1.35 3.85 2.63 2.44 3.33 4.00 0.00 2.70 0.00 3.70 3.33 2.38 0.00 0.00 1.79 0.00 2.70 8.16 0.00 3.03 1.92 0.00 1.64 2.94 0.00 0.00 0.00 0.00 1.72 1.52 0.00 2.78 0.00 5.26 5.88 3.23 4.35 0.00 0.00 K intron_retention CG3894 chr2R + chr2R_20653607_20653672 chr2R_20653606_20653607;chr2R_20653672_20653673 chr2R_20653301_20653606;chr2R_20653673_20654273 0.00 0.00 0.00 2.70 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 7.41 14.29 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 3.33 NA 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor rdx,I_chr3R_9796825_9822742 chr3R - chr3R_9795262_9795329 chr3R_9795280_9795329 chr3R_9795330_9795508;chr3R_9795119_9795261 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG5261,I_chr2L_7428611_7428877 chr2L + chr2L_7428611_7428925 chr2L_7428680_7428925 chr2L_7428926_7428977;chr2L_7428511_7428610 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 92.31 100.00 100.00 100.00 100.00 100.00 98.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 98.00 100.00 100.00 96.43 97.62 100.00 100.00 100.00 100.00 96.97 100.00 100.00 K intron_retention CG8949,I_chrX_16971474_16971708,I_chrX_16971501_16971713 chrX - chrX_16971474_16971713 chrX_16971473_16971474;chrX_16971713_16971714 chrX_16971401_16971473;chrX_16971714_16971808 10.77 8.33 15.56 5.88 16.00 9.76 15.69 22.95 13.95 0.00 0.00 8.75 12.20 11.11 11.76 27.50 5.71 7.69 16.67 8.60 6.45 26.83 11.94 8.00 11.11 3.70 20.93 9.52 20.83 7.69 9.52 0.00 15.38 13.56 12.50 35.48 7.84 8.33 11.11 10.77 7.69 10.67 17.65 18.37 0.00 17.86 0.00 6.78 11.43 6.45 13.24 8.82 0.00 0.00 16.98 0.00 12.00 12.82 K intron_retention Pka-R2,I_chr2R_5911755_5913333,I_chr2R_5911755_5913354,I_chr2R_5911803_5913333 chr2R - chr2R_5911755_5913354 chr2R_5911754_5911755;chr2R_5913354_5913355 chr2R_5911703_5911754;chr2R_5913355_5913433 94.12 NA NA 100.00 NA NA NA 90.91 95.24 NA NA 90.91 100.00 NA 100.00 92.31 NA NA NA 88.24 NA NA NA NA NA NA NA NA NA NA 92.86 NA NA 94.12 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA 90.91 NA NA NA K intron_retention crol,I_chr2L_11799403_11802904 chr2L - chr2L_11799403_11802904 chr2L_11799402_11799403;chr2L_11802904_11802905 chr2L_11799303_11799402;chr2L_11802905_11803004 100.00 98.72 98.39 98.48 100.00 100.00 100.00 98.25 100.00 100.00 100.00 99.19 97.44 100.00 98.48 100.00 100.00 100.00 96.88 99.21 100.00 99.67 99.45 99.30 99.13 100.00 100.00 99.09 96.97 100.00 100.00 100.00 99.47 98.86 100.00 100.00 99.51 100.00 99.49 99.40 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.80 98.75 99.13 100.00 100.00 100.00 98.28 100.00 100.00 100.00 K intron_retention Dystrophin,noncoding_17759,I_chr3R_15289404_15290179 chr3R + chr3R_15289404_15290221 chr3R_15289403_15289404;chr3R_15290221_15290222 chr3R_15289382_15289403;chr3R_15290222_15290279 50.00 NA 42.86 50.00 NA NA 71.43 47.83 65.00 NA NA 38.10 35.71 56.25 63.64 56.52 53.85 NA 61.54 47.06 NA NA 45.45 NA NA NA NA NA NA NA 50.00 NA NA 47.83 NA NA NA NA NA NA NA 47.06 NA NA NA NA NA NA 47.37 NA NA NA NA NA 50.00 NA NA NA K intron_retention Xe7,CRI_chr3R_1493111_1493414 chr3R - chr3R_1494193_1494348 chr3R_1494192_1494193;chr3R_1494348_1494349 chr3R_1493732_1494192;chr3R_1494349_1494534 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 5.77 NA 0.00 7.32 3.12 4.76 3.70 0.00 0.00 0.00 0.00 1.92 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 2.00 NA 7.14 2.94 0.00 0.00 0.00 0.00 0.00 6.06 NA 3.33 0.00 NA NA 0.00 3.85 0.00 1.92 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 NA K intron_retention Nhe3,I_chr2L_6680525_6680670 chr2L - chr2L_6680999_6681064 chr2L_6680998_6680999;chr2L_6681064_6681065 chr2L_6680947_6680998;chr2L_6681065_6681218 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 12.00 11.76 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 2.94 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 3.77 K intron_retention loco,I_chr3R_18448629_18449211,I_chr3R_18456329_18462522 chr3R - chr3R_18448629_18449211 chr3R_18448628_18448629;chr3R_18449211_18449212 chr3R_18448529_18448628;chr3R_18449212_18449273 35.49 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 46.15 NA NA NA NA NA 34.62 30.77 NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_927771_929704,CG32021,RI_chr4_928193_928245,I_chr4_928482_929704,noncoding_20815,I_chr4_929811_932812 chr4 - chr4_927771_929704;chr4_928551_929704 chr4_928482_929704 chr4_929705_929804;chr4_927741_927770 22.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.71 NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette Pop2,RI_chr3L_11992097_11993849 chr3L - chr3L_11994191_11995685 chr3L_11994191_11994826;chr3L_11994966_11995685 chr3L_11994827_11994965 chr3L_11993850_11994190;chr3L_11995686_11995985 0.00 0.98 0.00 0.90 0.00 0.00 1.01 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 1.43 1.33 0.00 0.00 1.36 1.69 1.69 0.79 1.22 0.00 0.00 2.20 1.94 0.00 0.00 0.00 0.00 0.80 0.00 1.27 1.94 0.00 0.00 1.03 0.55 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.61 0.00 0.93 1.28 0.00 0.00 1.20 1.37 0.00 0.00 0.00 K alternative_last_exon mbl,CEI_chr2R_13153717_13238598,I_chr2R_13163569_13203579 chr2R + chr2R_13163569_13193491;chr2R_13163569_13238598 chr2R_13163569_13183339 chr2R_13193492_13193737;chr2R_13238599_13238769 chr2R_13183340_13186065 chr2R_13163469_13163568 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.67 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Gp150,I_chr2R_18205316_18205386,RI_chr2R_18206133_18212679,I_chr2R_18211853_18212679,RI_chr2R_18212600_18212679,I_chr2R_18213233_18213308 chr2R + chr2R_18205243_18212679 chr2R_18205460_18212679 chr2R_18212680_18212779;chr2R_18205216_18205242 99.40 100.00 99.06 99.16 100.00 98.84 98.54 100.00 98.73 100.00 98.21 98.97 100.00 100.00 96.33 99.29 98.57 98.51 99.09 99.52 98.61 97.50 99.17 98.48 98.72 99.39 100.00 97.56 98.28 100.00 99.08 100.00 100.00 100.00 100.00 100.00 98.39 98.39 98.41 100.00 100.00 99.40 100.00 100.00 100.00 100.00 100.00 100.00 98.41 100.00 100.00 100.00 100.00 100.00 99.15 96.88 96.55 100.00 K jcn_only_AA Su(var)2-HP2 chr2R - chr2R_10499194_10499285 chr2R_10499197_10499285 chr2R_10499286_10499446;chr2R_10499125_10499193 95.00 96.30 96.97 84.09 85.71 100.00 96.15 93.88 94.20 90.91 90.48 98.21 89.47 92.00 93.94 97.78 NA 93.33 95.65 97.06 96.30 100.00 93.90 95.24 94.87 100.00 91.49 NA 95.00 100.00 96.15 NA 93.33 93.88 100.00 97.73 92.50 100.00 87.18 96.61 NA 94.03 91.18 93.33 NA 92.31 95.65 100.00 95.00 100.00 94.29 100.00 NA NA 86.21 96.43 NA NA K alternative_acceptor CG3835,I_chrX_2035640_2035931,I_chrX_2036036_2037024 chrX + chrX_2035640_2037024 chrX_2035640_2035931 chrX_2035540_2035639;chrX_2037025_2037124 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive CG17698 chr3L + chr3L_23731285_23739123,chr3L_23739193_23739289 chr3L_23731285_23733260,chr3L_23734185_23739289 chr3L_23739124_23739192 chr3L_23733261_23734184 chr3L_23731166_23731284;chr3L_23739290_23739644 97.14 92.31 94.74 95.83 77.78 100.00 97.56 97.14 96.23 75.00 100.00 94.44 100.00 96.30 93.75 97.87 100.00 91.67 100.00 94.29 100.00 100.00 100.00 100.00 88.89 100.00 93.33 80.00 100.00 90.00 100.00 100.00 87.50 93.18 100.00 84.62 88.89 100.00 100.00 94.74 80.00 97.50 100.00 100.00 75.00 91.67 88.89 84.62 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 90.91 K alternative_acceptor Pfrx,I_chrX_19390217_19400515,RI_chrX_19390217_19403850,RI_chrX_19392914_19400518,RI_chrX_19399882_19400518,I_chrX_19400112_19400515,RI_chrX_19400112_19400518,I_chrX_19400271_19400518 chrX + chrX_19400112_19400518 chrX_19400112_19400515 chrX_19400012_19400111;chrX_19400519_19400615 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD RpL29,I_chr2R_17184688_17191389 chr2R + chr2R_17181384_17181558;chr2R_17181380_17181558 chr2R_17181295_17181558 chr2R_17181559_17181664;chr2R_17181294_17181294 0.22 0.22 0.31 0.08 0.31 0.31 0.07 0.18 0.15 0.20 0.40 0.34 0.24 0.10 0.17 0.06 0.19 0.18 0.26 0.20 0.23 0.00 0.00 0.14 0.48 0.37 0.36 0.36 0.29 0.35 0.33 1.00 0.74 0.21 1.28 0.36 0.10 0.19 0.10 0.11 1.72 0.15 0.29 0.21 0.19 0.78 0.18 0.59 0.29 0.11 0.11 0.08 0.39 0.28 0.33 0.08 0.20 1.21 K intron_retention CG2608,E_chr2L_20647810_20648188 chr2L + chr2L_20645961_20646043 chr2L_20645960_20645961;chr2L_20646043_20646044 chr2L_20645848_20645960;chr2L_20646044_20647365 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG8594 chr2R + chr2R_8461459_8461553 chr2R_8461459_8461517 chr2R_8461392_8461458;chr2R_8461554_8461619 99.54 98.23 100.00 99.61 100.00 98.54 99.54 100.00 100.00 100.00 99.19 99.23 98.56 100.00 99.31 100.00 100.00 100.00 98.14 98.81 97.60 100.00 99.40 99.34 98.89 98.73 98.56 97.06 98.88 100.00 99.37 98.78 100.00 100.00 100.00 100.00 99.24 100.00 98.57 100.00 99.17 99.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.43 99.03 98.97 98.97 99.02 100.00 100.00 99.24 K jcn_only_AA Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16106466_16106995;chr3L_16106466_16107411 chr3L_16106466_16106984 chr3L_16106332_16106465 26.83 22.22 19.23 33.33 34.88 10.64 41.33 23.26 26.56 22.00 21.21 22.76 32.65 20.97 25.42 22.64 37.84 26.42 38.89 23.42 26.83 12.73 38.46 29.11 27.08 22.95 29.11 18.00 25.49 33.78 36.23 37.50 15.53 23.46 34.48 36.36 31.93 24.19 28.57 31.19 42.50 29.20 37.04 25.00 16.33 33.33 26.83 21.43 27.27 22.41 22.43 32.14 27.27 19.57 38.81 23.81 36.67 20.37 K alternative_donor tomosyn,I_chrX_12531219_12531470,I_chrX_12534873_12541731,noncoding_23357,I_chrX_12548772_12549203 chrX + chrX_12543216_12545142;chrX_12542817_12545142 chrX_12543084_12545142 chrX_12545143_12545259;chrX_12542700_12542816 28.57 26.67 41.67 27.27 25.00 22.22 28.57 28.57 13.33 NA 20.00 16.67 28.57 22.22 36.36 12.50 NA 41.67 22.22 23.53 25.00 37.93 17.86 28.57 23.53 30.00 44.44 25.00 37.93 19.23 16.67 35.29 35.29 44.44 40.00 34.62 38.46 14.29 20.69 41.51 25.00 22.58 33.33 39.39 36.00 47.83 15.79 45.90 16.67 23.08 16.00 36.36 NA 30.77 33.33 28.57 28.57 25.00 K intron_retention Hsc70-4 chr3R + chr3R_11068903_11070081 chr3R_11068902_11068903;chr3R_11070081_11070082 chr3R_11068878_11068902;chr3R_11070082_11072336 53.33 NA NA NA NA NA NA NA 53.33 NA NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.00 85.19 NA NA NA NA NA 47.06 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 41.67 NA NA NA NA NA NA 60.00 NA NA K intron_retention MRP,I_chr2L_12727117_12729243,F_chr2L_12727117_12736035 chr2L + chr2L_12728242_12729930 chr2L_12728241_12728242;chr2L_12729930_12729931 chr2L_12728173_12728241;chr2L_12729931_12729979 100.00 NA 100.00 100.00 100.00 NA 100.00 96.88 95.00 NA NA 97.56 100.00 100.00 100.00 100.00 100.00 NA 100.00 97.06 NA NA 95.24 91.67 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 92.31 93.75 NA 100.00 93.33 NA 100.00 NA 100.00 NA NA NA 100.00 95.24 NA 100.00 NA NA NA 91.67 NA NA NA K alternative_donor Scsalpha,I_chr3L_3817163_3817436,I_chr3L_3817289_3817436 chr3L + chr3L_3817081_3817436 chr3L_3817289_3817436 chr3L_3817437_3817536;chr3L_3817063_3817080 0.19 0.35 0.00 0.64 0.00 0.00 0.00 0.41 0.23 0.00 0.00 0.22 0.67 0.00 0.00 0.00 1.23 0.00 0.00 0.19 0.00 1.67 0.32 0.00 0.00 0.00 0.00 0.36 0.42 0.00 0.00 0.00 0.36 0.32 0.60 0.44 0.00 0.00 0.20 0.57 0.00 0.42 0.62 0.47 0.00 0.33 0.00 0.39 0.25 0.00 0.33 0.00 0.00 0.00 0.78 0.30 0.22 0.31 K intron_retention Atpalpha,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16799070_16799227 chr3R_16799069_16799070;chr3R_16799227_16799228 chr3R_16798895_16799069;chr3R_16799228_16799460 0.00 0.21 0.45 0.00 0.00 0.00 0.58 0.52 0.22 0.00 0.00 0.28 0.00 0.00 0.24 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.28 0.23 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.33 1.05 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4699 chr3R + chr3R_11626023_11626185 chr3R_11626022_11626023;chr3R_11626185_11626186 chr3R_11625098_11626022;chr3R_11626186_11627647 0.00 0.00 0.00 2.15 0.00 0.00 0.00 2.50 0.69 1.89 0.00 0.85 0.00 1.69 0.00 0.00 3.92 1.61 1.49 1.31 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.81 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 1.27 0.00 1.20 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention sd,noncoding_23930,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15706564_15707881 chrX_15706563_15706564;chrX_15707881_15707882 chrX_15706468_15706563;chrX_15707882_15708324 92.86 100.00 84.62 95.83 91.67 91.67 94.12 100.00 96.88 NA 92.86 84.38 100.00 100.00 92.86 100.00 92.86 93.33 87.50 100.00 90.00 88.89 76.47 76.92 100.00 90.00 90.91 88.89 90.00 100.00 92.31 NA 100.00 100.00 90.91 100.00 93.75 81.25 NA 96.00 NA 95.65 83.33 92.86 NA NA 87.50 93.75 92.31 NA 94.74 88.89 NA NA 95.00 100.00 90.00 NA K jcn_only_AD Gmap,I_chrX_15400854_15401194,I_chrX_15402291_15403750,mir-304,mir-12 chrX + chrX_15401627_15403750 chrX_15402291_15403750 chrX_15403751_15403850;chrX_15401423_15401626 0.00 0.00 0.00 0.00 0.00 2.27 1.75 1.67 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 2.17 0.00 0.00 0.00 0.00 4.00 0.00 1.22 0.00 0.00 1.61 0.00 3.17 1.82 0.00 0.00 1.10 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.83 0.00 3.12 1.06 0.00 0.00 1.82 0.99 1.96 0.00 0.00 0.92 0.00 1.89 0.00 0.89 2.27 K intron_retention Ect4,I_chr3L_8075556_8086158,C_chr3L_8091754_8101552,I_chr3L_8091826_8092243,I_chr3L_8098397_8101385,I_chr3L_8098758_8101738,I_chr3L_8100030_8101385 chr3L + chr3L_8091826_8092245 chr3L_8091825_8091826;chr3L_8092245_8092246 chr3L_8091726_8091825;chr3L_8092246_8092343 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pabp2,I_chr2R_4020297_4020426 chr2R + chr2R_4020581_4020645 chr2R_4020580_4020581;chr2R_4020645_4020646 chr2R_4020447_4020580;chr2R_4020646_4020713 8.00 5.00 3.17 0.00 0.00 8.00 24.00 6.06 8.62 8.33 12.12 4.10 6.25 4.44 8.97 3.64 5.88 4.65 5.45 3.45 8.51 22.73 13.89 9.09 28.57 25.53 19.23 8.33 48.00 13.79 9.62 10.00 2.38 5.97 3.70 25.00 6.90 10.00 18.52 9.38 19.05 4.95 3.77 10.00 3.57 9.52 6.98 8.70 5.61 11.54 13.79 8.00 0.00 5.26 5.63 5.88 6.82 0.00 K intron_retention Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19565461_19565524 chr2R_19565460_19565461;chr2R_19565524_19565525 chr2R_19565238_19565460;chr2R_19565525_19565682 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3437,F_chr3L_9450381_9450457,CG3434 chr3L - chr3L_9450403_9450461 chr3L_9450402_9450403;chr3L_9450461_9450462 chr3L_9449866_9450402;chr3L_9450462_9450557 33.33 NA NA 50.00 NA NA 21.43 26.67 36.84 NA NA 35.00 NA NA 26.67 45.45 NA NA 15.38 41.18 NA NA 30.77 NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA K intron_retention I_chr3R_8822346_8822403,CG7518 chr3R + chr3R_8825939_8826112 chr3R_8825938_8825939;chr3R_8826112_8826113 chr3R_8825924_8825938;chr3R_8826113_8826169 0.00 0.00 0.00 4.05 0.00 0.00 1.67 0.00 1.03 0.00 5.26 1.45 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.88 NA NA 7.41 8.89 NA 0.00 1.02 0.00 4.55 4.00 4.76 0.00 3.23 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.44 0.00 2.70 0.00 NA NA 0.00 0.00 14.29 NA K jcn_only_AD tlk chrX + chrX_3670471_3675687 chrX_3671394_3675687 chrX_3675688_3677592;chrX_3670092_3670470 98.34 NA NA 95.83 NA NA NA 90.48 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA 81.82 91.30 NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 100.00 NA 100.00 NA NA 100.00 NA 85.71 NA NA NA 93.33 96.67 NA NA NA NA NA NA NA NA NA K jcn_only_AA Taf1 chr3R + chr3R_2480387_2480710 chr3R_2480387_2480707 chr3R_2480192_2480386;chr3R_2480711_2480724 9.68 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.68 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention M(2)21AB,I_chr2L_107839_110405,I_chr2L_110878_111037,I_chr2L_112022_112689,RI_chr2L_132256_132482 chr2L + chr2L_108810_110405 chr2L_108809_108810;chr2L_110405_110406 chr2L_108588_108809;chr2L_110406_110483 0.00 0.00 0.00 0.61 0.00 0.00 0.71 0.00 0.20 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.79 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.61 0.00 K intron_retention RanGap chr2L + chr2L_19446853_19446908 chr2L_19446852_19446853;chr2L_19446908_19446909 chr2L_19446676_19446852;chr2L_19446909_19447317 0.00 0.00 0.00 0.00 0.00 0.00 2.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.38 0.00 0.00 0.00 0.00 0.00 0.00 2.70 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Gp150,I_chr2R_18205316_18205386,I_chr2R_18213233_18213308 chr2R + chr2R_18205243_18205386;chr2R_18205316_18205386;chr2R_18205282_18205386 chr2R_18205274_18205386 chr2R_18205387_18205459;chr2R_18205216_18205242 2.38 3.45 1.93 2.92 0.37 0.98 3.31 1.45 1.85 4.84 2.00 1.66 1.05 2.05 1.14 2.03 0.88 1.95 1.42 3.70 2.71 2.90 4.98 2.38 7.44 5.81 2.08 8.33 10.13 2.94 2.50 8.89 0.78 2.05 2.30 4.00 2.68 3.33 2.56 3.28 2.38 1.84 2.67 1.35 5.13 2.70 1.75 1.04 2.29 5.26 0.57 0.83 4.41 0.00 1.78 3.85 2.53 3.61 K intron_retention CG11299,noncoding_8970,I_chr2R_19602423_19609308,I_chr2R_19619053_19619186 chr2R + chr2R_19601642_19602188 chr2R_19601641_19601642;chr2R_19602188_19602189 chr2R_19601628_19601641;chr2R_19602189_19602201 10.21 0.00 11.11 9.68 NA NA 15.38 12.77 10.42 NA NA 7.50 10.00 13.33 14.29 15.15 18.75 25.00 20.00 13.73 5.26 NA 9.09 16.67 NA 19.05 0.00 NA NA 13.33 13.33 NA 10.00 2.70 NA NA 0.00 0.00 0.00 4.44 NA 0.00 26.09 10.53 NA NA NA 22.73 10.00 4.55 20.00 NA 10.00 NA 9.09 0.00 17.65 5.88 K intron_retention Vrp1,I_chr2R_17997529_17997692 chr2R - chr2R_17998444_17998832 chr2R_17998443_17998444;chr2R_17998832_17998833 chr2R_17998401_17998443;chr2R_17998833_17999014 0.00 0.00 0.00 3.39 5.26 0.00 2.13 0.00 1.83 0.00 2.94 1.52 6.25 2.33 0.00 0.00 0.00 0.00 3.45 0.00 0.00 3.28 0.00 0.00 2.56 2.38 0.00 5.36 0.00 3.39 2.17 0.00 0.00 4.00 0.00 2.22 0.00 0.00 0.00 3.36 0.00 0.00 0.00 2.74 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 K intron_retention HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13164676_13165514 chrX_13164675_13164676;chrX_13165514_13165515 chrX_13164424_13164675;chrX_13165515_13165622 3.23 4.55 4.76 7.48 3.23 3.92 11.39 4.17 3.82 1.79 3.77 3.00 4.72 4.12 3.23 4.58 4.39 2.73 5.31 3.09 2.60 3.51 1.35 2.29 4.88 5.13 4.35 5.26 6.33 0.00 4.17 0.00 2.52 6.88 2.27 12.50 2.92 0.00 1.72 1.76 0.00 3.43 2.06 0.00 1.79 5.15 5.63 1.34 4.07 3.12 2.94 4.00 0.00 1.92 3.16 2.82 3.57 2.63 K mutually_exclusive CG8671,I_chr2L_21275807_21277205 chr2L + chr2L_21275807_21279883,chr2L_21280448_21281131 chr2L_21275807_21277277,chr2L_21278430_21281131 chr2L_21279884_21280447 chr2L_21277278_21278429 chr2L_21275724_21275806;chr2L_21281132_21281337 96.36 95.56 94.74 94.83 94.44 97.06 97.26 95.45 97.09 96.36 93.33 95.31 94.74 97.73 93.88 95.45 97.56 96.88 97.83 96.15 95.45 96.97 97.09 95.18 98.18 96.55 95.89 94.00 94.74 96.77 94.83 96.97 97.50 96.20 96.61 98.70 96.55 96.97 96.25 95.70 97.92 94.44 97.56 95.00 95.24 96.83 95.00 98.44 95.65 98.51 96.34 98.11 97.30 97.83 96.30 96.08 98.11 98.33 K alternative_donor CG8239 chrX + chrX_15643337_15643397 chrX_15643341_15643397 chrX_15643398_15643468;chrX_15643233_15643336 0.00 NA 5.00 NA NA 6.67 0.00 3.85 3.45 NA NA 3.45 NA 0.00 0.00 3.85 NA 0.00 0.00 0.00 NA NA NA 6.25 NA NA 7.14 NA NA NA 7.41 NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA 0.00 NA NA 2.94 NA 0.00 NA NA NA 5.56 0.00 NA NA K intron_retention CG8446 chr2R + chr2R_12084078_12084196 chr2R_12084077_12084078;chr2R_12084196_12084197 chr2R_12083895_12084077;chr2R_12084197_12084416 27.33 30.91 28.57 18.33 20.00 45.16 28.57 18.18 27.12 20.69 11.54 35.48 25.93 36.67 29.03 26.32 19.05 29.73 35.00 27.94 21.21 NA 21.69 21.43 25.42 45.95 40.00 27.66 40.74 20.00 36.84 29.41 16.00 28.57 25.71 30.43 21.82 22.00 24.59 17.72 16.67 26.15 26.09 17.07 21.05 27.54 29.73 34.62 45.24 32.84 27.87 28.00 31.94 27.78 33.33 25.68 25.93 20.00 K mutually_exclusive mys,I_chrX_7958795_7961094 chrX + chrX_7958795_7960130,chrX_7960216_7961094 chrX_7958795_7959480,chrX_7959566_7961094 chrX_7960131_7960215 chrX_7959481_7959565 chrX_7958695_7958794;chrX_7961095_7961194 81.03 74.52 79.65 86.92 68.87 81.10 88.46 83.33 76.30 87.67 90.00 91.35 56.25 71.89 78.53 90.41 57.40 81.75 73.15 71.60 86.09 90.41 86.25 83.00 81.65 59.02 82.11 71.79 91.36 75.23 72.94 80.00 77.53 79.21 79.74 82.61 80.21 84.29 78.31 74.81 83.33 78.03 79.72 83.55 73.33 78.81 83.47 73.44 85.39 91.25 83.86 77.94 94.16 81.82 74.63 81.03 92.95 93.33 K intron_retention CG4726 chr2L + chr2L_1143411_1145443 chr2L_1143410_1143411;chr2L_1145443_1145444 chr2L_1143391_1143410;chr2L_1145444_1146472 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 1.20 0.00 0.00 0.00 1.28 1.13 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.85 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8301 chr3R + chr3R_5411621_5411677 chr3R_5411620_5411621;chr3R_5411677_5411678 chr3R_5411471_5411620;chr3R_5411678_5411863 0.00 6.67 0.00 0.00 NA 0.00 8.00 0.00 0.00 NA NA 15.00 NA NA NA 5.56 0.00 NA 0.00 0.00 0.00 8.00 9.52 0.00 NA NA NA 14.29 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA NA NA 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 NA K intron_retention CG4065,RI_chr2R_20024231_20024292,I_chr2R_20024873_20024921 chr2R - chr2R_20024859_20024921 chr2R_20024858_20024859;chr2R_20024921_20024922 chr2R_20024773_20024858;chr2R_20024922_20025021 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 1.27 0.00 0.00 0.00 0.00 0.00 1.92 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20824725_20825271;chr2L_20824494_20825271;chr2L_20824631_20825271 chr2L_20824602_20825271 chr2L_20825272_20825366;chr2L_20824482_20824493 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA 4.55 0.00 0.00 0.00 11.11 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K alternative_donor Pka-R2,I_chr2R_5911755_5913333,I_chr2R_5911755_5913354,I_chr2R_5911803_5913333 chr2R - chr2R_5911708_5913354 chr2R_5911708_5913333 chr2R_5911703_5911707;chr2R_5913355_5913433 33.33 NA 35.71 NA NA NA NA 32.00 33.33 NA 50.00 33.33 NA NA 45.45 36.84 33.33 NA 30.77 47.83 33.33 NA 28.57 23.08 NA NA NA NA NA 25.00 46.15 NA 25.00 37.04 44.44 NA 30.77 NA 15.38 29.41 NA 34.62 NA 17.65 NA NA NA NA 38.10 NA 40.00 NA NA NA 30.00 NA NA NA K intron_retention CG14200 chrX + chrX_19409678_19409945 chrX_19409677_19409678;chrX_19409945_19409946 chrX_19408752_19409677;chrX_19409946_19412154 6.56 3.57 0.00 12.50 0.00 7.41 19.44 2.70 11.63 41.67 0.00 7.50 9.09 5.00 12.00 14.29 10.53 0.00 0.00 3.77 0.00 5.41 18.75 7.69 13.79 8.00 6.25 17.65 8.57 3.64 8.33 2.94 5.17 10.53 0.00 7.32 6.56 10.71 6.52 9.62 3.33 6.38 10.53 6.06 12.50 5.71 8.00 12.50 2.38 4.17 11.43 0.00 0.00 8.33 2.94 4.76 19.05 5.71 K cassette CG11063 chrX - chrX_13721753_13722674 chrX_13721753_13722256;chrX_13722287_13722674 chrX_13722257_13722286 chrX_13721612_13721752;chrX_13722675_13722770 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 1.28 0.00 1.23 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 K intron_retention CG1513,I_chr2R_5778649_5778739 chr2R - chr2R_5771508_5771589 chr2R_5771507_5771508;chr2R_5771589_5771590 chr2R_5771402_5771507;chr2R_5771590_5771711 2.76 2.22 5.88 3.03 3.23 3.53 3.39 2.82 3.17 6.56 0.00 3.12 3.08 0.00 4.88 3.54 3.12 1.85 0.00 1.04 4.17 3.08 1.52 1.45 1.75 2.33 3.31 5.77 2.11 0.00 2.25 1.03 2.82 2.76 3.33 3.19 3.36 0.93 2.41 2.40 2.38 3.09 0.00 1.83 0.00 1.85 4.39 2.53 3.47 0.00 3.31 2.44 1.08 2.80 4.04 2.52 3.36 1.13 K intron_retention CG32032 chr3L + chr3L_9087042_9087107 chr3L_9087041_9087042;chr3L_9087107_9087108 chr3L_9086893_9087041;chr3L_9087108_9087306 100.00 100.00 99.58 100.00 100.00 100.00 100.00 99.66 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.71 100.00 100.00 100.00 100.00 100.00 K intron_retention Top3beta,Rpt4,CG15891 chrX - chrX_6184809_6184871 chrX_6184808_6184809;chrX_6184871_6184872 chrX_6184088_6184808;chrX_6184872_6184991 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG8709,I_chr2R_4027128_4027182,RI_chr2R_4029534_4029599,I_chr2R_4030580_4030636,I_chr2R_4030580_4030746,I_chr2R_4035901_4043493 chr2R - chr2R_4030580_4033256;chr2R_4030580_4033259 chr2R_4030580_4030636 chr2R_4030480_4030579;chr2R_4033260_4033265 0.00 0.00 0.00 0.00 0.00 1.75 0.88 0.00 0.00 0.00 0.00 4.20 3.03 0.00 0.00 0.00 3.45 0.00 0.00 0.96 0.00 3.92 0.00 1.25 0.00 0.00 0.00 5.56 2.04 0.00 0.00 0.00 4.08 0.00 0.00 0.00 1.56 0.00 0.00 0.00 3.45 0.00 0.00 3.23 4.00 2.38 0.00 4.44 3.30 0.00 1.09 2.27 2.63 0.00 0.00 0.00 0.00 6.00 K jcn_only_AD arm,I_chrX_1790787_1794076,I_chrX_1793073_1793336,I_chrX_1793073_1793350,I_chrX_1793073_1793389,I_chrX_1793073_1793734,I_chrX_1793073_1794406,RI_chrX_1795648_1795745,I_chrX_1798310_1798525,I_chrX_1798315_1798577 chrX - chrX_1793073_1793794;chrX_1793073_1793413 chrX_1793073_1793431 chrX_1793013_1793072;chrX_1793795_1793834 18.02 NA 13.79 16.00 NA NA 9.52 7.41 18.52 NA NA 25.00 NA 27.27 18.18 2.63 10.00 NA 14.81 22.22 NA NA 35.48 NA NA NA NA NA NA NA 29.41 NA NA 20.37 22.50 NA NA NA NA 19.51 NA 21.21 NA 17.86 NA 9.76 NA 9.38 13.16 NA NA NA NA NA 22.86 NA NA 5.56 K jcn_only_AA CG9425,I_chr3L_14783173_14784369 chr3L + chr3L_14783173_14784369;chr3L_14783173_14785138 chr3L_14783173_14784970 chr3L_14783073_14783172;chr3L_14785139_14785560 90.00 NA NA 100.00 NA NA 100.00 96.88 90.00 NA NA 90.32 NA NA NA 68.75 NA NA 100.00 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA 78.57 NA NA NA NA NA NA 84.62 NA NA NA NA NA NA NA NA NA K alternative_acceptor Adk1,RI_chr3L_12194215_12194473,I_chr3L_12197507_12197558 chr3L - chr3L_12194190_12194473 chr3L_12194215_12194473 chr3L_12194474_12194573;chr3L_12194115_12194189 0.00 0.00 NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 5.88 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 K intron_retention CG10960,I_chr3L_12819402_12819475,I_chr3L_12820683_12835879 chr3L - chr3L_12819406_12819475 chr3L_12819405_12819406;chr3L_12819475_12819476 chr3L_12819337_12819405;chr3L_12819476_12819536 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10743 chr3L + chr3L_13506518_13506581 chr3L_13506517_13506518;chr3L_13506581_13506582 chr3L_13506449_13506517;chr3L_13506582_13506892 96.72 97.83 98.28 98.80 95.12 100.00 86.96 100.00 94.85 88.89 94.44 92.86 91.49 92.00 93.85 98.91 95.45 92.31 94.20 99.00 93.75 91.18 98.46 98.11 97.56 98.28 100.00 97.73 95.24 97.62 95.59 93.94 100.00 97.33 100.00 100.00 96.72 97.06 100.00 93.51 95.65 96.23 97.87 94.64 95.00 95.00 97.14 92.16 98.41 100.00 100.00 97.78 94.87 100.00 94.29 97.67 96.30 83.64 K intron_retention Kap-alpha3,RE_chr3R_5403032_5403325,I_chr3R_5403032_5403329,E_chr3R_5403032_5403405 chr3R - chr3R_5403089_5403329 chr3R_5403088_5403089;chr3R_5403329_5403330 chr3R_5403084_5403088;chr3R_5403330_5403367 0.00 0.00 0.00 0.00 0.00 0.00 1.46 0.81 1.10 0.00 0.00 3.37 0.00 0.00 0.00 1.17 0.00 0.00 2.08 1.03 0.00 0.00 3.12 2.44 0.00 0.00 0.00 2.22 0.00 0.00 1.35 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 1.61 3.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG31534,I_chr3R_536075_536566 chr3R + chr3R_536075_536619 chr3R_536074_536075;chr3R_536619_536620 chr3R_535975_536074;chr3R_536620_536666 0.00 0.00 14.29 17.24 3.85 0.00 0.00 0.00 2.38 0.00 NA 0.00 0.00 0.00 3.85 7.14 0.00 3.23 0.00 0.00 0.00 7.69 4.88 0.00 4.76 0.00 0.00 NA 0.00 0.00 0.00 3.03 7.27 5.00 0.00 0.00 0.00 0.00 5.77 5.41 7.41 0.00 0.00 0.00 5.71 2.22 0.00 1.59 1.89 7.41 4.44 0.00 0.00 10.00 0.00 0.00 0.00 0.00 K intron_retention Rbcn-3A chrX - chrX_6146879_6149294 chrX_6146878_6146879;chrX_6149294_6149295 chrX_6146661_6146878;chrX_6149295_6149522 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.72 0.00 0.00 NA 0.00 NA 0.00 3.92 0.00 0.00 0.00 NA NA 3.45 NA NA NA K jcn_only_AD CG14478 chr2R + chr2R_13345226_13349498 chr2R_13345378_13349498 chr2R_13349499_13349990;chr2R_13345201_13345225 100.00 98.53 97.01 100.00 100.00 98.00 98.63 97.39 96.62 100.00 100.00 97.03 100.00 100.00 97.30 97.89 94.34 98.31 98.63 100.00 100.00 94.92 98.94 100.00 97.78 97.96 100.00 96.61 96.72 98.25 100.00 100.00 99.12 98.20 98.65 100.00 100.00 100.00 100.00 97.71 100.00 97.74 98.08 96.92 100.00 100.00 100.00 99.17 99.17 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette Fis1,I_chr2R_1491917_1491981,I_chr2R_1491917_1492087,I_chr2R_1492154_1492214 chr2R - chr2R_1491917_1492087 chr2R_1491917_1491981;chr2R_1492022_1492087 chr2R_1491982_1492021 chr2R_1491817_1491916;chr2R_1492088_1492153 97.22 96.43 96.77 96.30 100.00 100.00 95.00 98.51 98.98 90.91 100.00 100.00 100.00 100.00 96.00 94.81 97.14 92.86 97.87 98.80 96.55 95.24 97.30 97.30 95.45 94.44 96.77 90.00 92.86 89.47 97.83 96.00 94.44 98.61 96.15 100.00 100.00 96.43 100.00 97.22 94.74 98.70 96.97 96.30 100.00 97.50 100.00 100.00 96.83 97.22 100.00 95.45 100.00 97.44 97.56 100.00 98.25 96.30 K intron_retention CG5524,I_chr3R_20017846_20017911,I_chr3R_20018643_20018703 chr3R - chr3R_20018647_20018703 chr3R_20018646_20018647;chr3R_20018703_20018704 chr3R_20018427_20018646;chr3R_20018704_20018803 0.00 0.00 0.00 21.43 NA 0.00 0.00 3.45 0.00 NA NA 4.35 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 8.33 4.35 0.00 NA 7.69 0.00 NA 16.67 0.00 33.33 0.00 0.00 0.00 NA 30.77 0.00 0.00 0.00 7.14 NA 0.00 0.00 0.00 NA 5.26 NA 2.04 0.00 0.00 9.52 0.00 NA NA 0.00 NA NA 0.00 K intron_retention RpL28,snoRNA:Or-CD12,RI_chr3L_3221710_3221877 chr3L - chr3L_3221284_3221466 chr3L_3221283_3221284;chr3L_3221466_3221467 chr3L_3221116_3221283;chr3L_3221467_3221709 0.07 0.07 0.05 0.30 0.05 0.05 0.17 0.11 0.08 0.00 0.00 0.05 0.07 0.07 0.04 0.06 0.09 0.07 0.10 0.10 0.12 0.22 0.12 0.08 0.16 0.07 0.11 0.35 0.15 0.10 0.06 0.02 0.05 0.05 0.10 0.12 0.00 0.06 0.06 0.07 0.03 0.07 0.00 0.00 0.01 0.03 0.05 0.06 0.15 0.11 0.07 0.00 0.04 0.05 0.05 0.07 0.06 0.04 K alternative_donor Arf51F chr2R + chr2R_11210536_11210628 chr2R_11210546_11210628 chr2R_11210629_11210646;chr2R_11210467_11210535 87.50 63.64 NA 84.62 NA NA 87.50 85.71 91.67 NA NA 68.42 NA 100.00 90.00 NA NA 77.78 NA 77.78 NA NA 63.64 75.00 NA NA 91.67 NA NA 85.71 75.00 NA 100.00 87.50 NA NA 88.89 NA 92.86 100.00 NA 90.91 NA NA NA 77.78 90.91 88.89 83.33 NA NA NA NA NA 88.89 NA NA NA K multi_cassette CtBP chr3R + chr3R_8845924_8847141 chr3R_8845924_8846575;chr3R_8846837_8846897;chr3R_8847030_8847141 chr3R_8846576_8846836;chr3R_8846898_8847029 chr3R_8845618_8845923;chr3R_8847142_8847364 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor pAbp,I_chr2R_14027838_14028996 chr2R + chr2R_14028460_14028996 chr2R_14028460_14028992 chr2R_14028264_14028459;chr2R_14028997_14029096 90.57 92.11 89.66 90.57 94.12 92.31 92.00 87.27 91.67 92.31 91.67 92.73 96.43 91.67 95.83 91.14 83.33 95.24 85.71 84.44 92.31 88.89 87.50 87.50 NA 88.00 72.41 85.71 80.95 87.50 92.31 90.00 78.12 92.68 78.26 95.45 90.48 96.55 72.22 86.67 88.46 92.73 88.89 85.45 NA 93.75 100.00 81.25 92.73 91.67 88.89 100.00 92.86 80.00 81.25 100.00 87.50 92.31 K mutually_exclusive bbc,I_chr2R_9376554_9377246,REI_chr2R_9379401_9381986 chr2R - chr2R_9375638_9377246,chr2R_9377379_9378939;chr2R_9375638_9378244,chr2R_9378377_9378939 chr2R_9375638_9376421,chr2R_9376554_9378939 chr2R_9377247_9377378;chr2R_9378245_9378376 chr2R_9376422_9376553 chr2R_9375479_9375637;chr2R_9378940_9379098 4.95 4.95 5.42 6.82 3.20 7.28 7.46 8.08 5.16 1.16 6.78 6.30 9.91 6.34 6.63 10.18 3.39 11.86 7.91 8.84 7.32 7.38 5.99 6.81 3.61 6.21 4.86 2.19 2.66 2.42 6.67 2.67 1.61 5.93 4.08 10.84 2.18 5.05 4.23 2.40 1.26 5.83 5.32 3.37 2.17 1.91 4.38 0.86 5.51 4.37 4.12 2.10 3.33 4.19 5.49 4.15 2.49 1.35 K intron_retention Cirl,R_chr2R_4502755_4503407 chr2R + chr2R_4503662_4503831 chr2R_4503661_4503662;chr2R_4503831_4503832 chr2R_4503659_4503661;chr2R_4503832_4504021 91.67 92.31 100.00 96.00 NA NA 76.19 82.61 82.14 NA 88.89 100.00 100.00 91.67 91.67 82.35 90.00 NA 100.00 95.00 NA 91.67 88.89 NA NA 93.75 88.89 66.67 100.00 93.75 81.82 83.33 90.91 85.00 92.31 93.33 68.75 81.82 83.33 85.71 92.31 95.00 100.00 94.12 NA 91.67 NA 92.59 94.12 NA 85.71 NA NA NA 100.00 NA NA 100.00 K multi_cassette I_chr3L_1494947_1496080,pUf68,I_chr3L_1499710_1499771,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1499338_1501345 chr3L_1499338_1499771;chr3L_1499880_1500244;chr3L_1500389_1501345 chr3L_1499772_1499879;chr3L_1500245_1500388 chr3L_1499043_1499337;chr3L_1501346_1501397 80.00 60.00 NA 100.00 NA NA NA 100.00 62.50 100.00 66.67 100.00 85.71 75.00 60.00 75.00 NA NA 100.00 55.56 60.00 100.00 66.67 100.00 60.00 NA 80.00 75.00 NA 80.00 56.25 NA 50.00 80.00 50.00 100.00 NA NA 83.33 80.00 NA 83.33 NA 87.50 100.00 60.00 100.00 44.44 62.50 83.33 88.89 83.33 NA NA 75.00 80.00 NA NA K intron_retention LIMK1,CG1824,I_chrX_12488942_12489000 chrX - chrX_12488926_12489000 chrX_12488925_12488926;chrX_12489000_12489001 chrX_12488842_12488925;chrX_12489001_12489100 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 2.56 0.00 2.13 5.71 0.00 4.08 2.08 0.00 7.25 0.00 0.00 0.00 1.72 2.00 0.00 5.26 0.00 3.39 0.00 0.00 1.48 2.13 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 1.15 K alternative_donor slmb,I_chr3R_16951107_16953048 chr3R - chr3R_16946692_16946754 chr3R_16946692_16946751 chr3R_16946556_16946691;chr3R_16946755_16946941 100.00 100.00 96.55 100.00 100.00 100.00 97.14 97.67 100.00 100.00 100.00 100.00 100.00 94.74 96.77 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 K intron_retention CG8079,I_chr2R_11109323_11109403 chr2R + chr2R_11109329_11109403 chr2R_11109328_11109329;chr2R_11109403_11109404 chr2R_11109233_11109328;chr2R_11109404_11109485 40.00 NA NA 25.00 NA NA NA NA 63.64 NA NA NA NA NA NA NA NA NA NA 40.00 NA NA 57.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 38.46 NA NA NA NA NA NA NA K intron_retention CG31249 chr3R - chr3R_13512560_13512617 chr3R_13512559_13512560;chr3R_13512617_13512618 chr3R_13512233_13512559;chr3R_13512618_13512769 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 2.78 NA 0.00 16.00 12.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11055 chr2R + chr2R_16145258_16145691 chr2R_16145257_16145258;chr2R_16145691_16145692 chr2R_16145189_16145257;chr2R_16145692_16148064 10.53 NA 6.67 0.00 0.00 9.09 26.32 3.85 14.29 NA 18.75 9.09 14.29 13.33 12.50 NA NA NA 13.33 9.52 6.67 18.52 14.29 10.53 NA 20.00 35.71 21.88 10.53 9.09 NA NA 2.27 7.69 4.76 36.84 5.88 NA 15.38 7.41 30.77 13.79 14.29 0.00 20.00 NA NA 3.23 6.90 NA 10.00 NA NA NA 11.76 NA NA 3.70 K alternative_donor Csk,I_chr3R_7463337_7463512,I_chr3R_7468928_7472509 chr3R - chr3R_7461967_7462050 chr3R_7461967_7462023 chr3R_7461898_7461966;chr3R_7462051_7462126 100.00 100.00 99.35 99.48 100.00 100.00 100.00 100.00 99.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.65 99.02 100.00 100.00 100.00 100.00 99.30 99.62 100.00 99.41 99.50 100.00 98.97 99.53 100.00 99.52 100.00 99.73 100.00 100.00 99.63 99.26 100.00 100.00 100.00 100.00 100.00 99.48 99.48 100.00 100.00 99.63 99.33 99.26 100.00 100.00 100.00 100.00 100.00 K intron_retention ena chr2R + chr2R_15047541_15047681 chr2R_15047540_15047541;chr2R_15047681_15047682 chr2R_15047496_15047540;chr2R_15047682_15048407 2.29 3.45 0.00 2.21 0.00 5.06 0.00 5.71 2.97 0.00 0.00 2.08 0.00 6.56 0.00 2.63 1.32 1.32 3.70 2.04 0.00 1.55 2.08 2.94 2.86 3.12 6.25 3.85 3.03 2.54 0.00 5.77 0.88 2.97 3.33 0.00 1.40 2.04 1.45 4.90 6.12 2.56 3.77 3.37 3.03 2.56 0.00 3.92 2.29 0.00 0.00 4.08 2.27 0.00 2.15 2.78 0.00 5.13 K intron_retention Crc,Scm chr3R - chr3R_5454891_5454929 chr3R_5454890_5454891;chr3R_5454929_5454930 chr3R_5454656_5454890;chr3R_5454930_5455337 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.96 100.00 100.00 100.00 100.00 99.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.97 99.95 100.00 100.00 100.00 100.00 100.00 100.00 99.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.98 K intron_retention CG3499,I_chr2R_18772777_18772819 chr2R - chr2R_18772185_18772242 chr2R_18772184_18772185;chr2R_18772242_18772243 chr2R_18771871_18772184;chr2R_18772243_18772316 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 2.17 2.13 0.00 3.85 10.81 3.12 0.00 5.26 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 4.76 2.04 0.00 0.00 0.00 4.08 0.00 0.00 3.33 0.00 2.33 2.70 4.35 0.00 K cassette CG9171,RI_chr2L_5792418_5799117,I_chr2L_5799412_5800043 chr2L - chr2L_5787985_5800043 chr2L_5787985_5799117;chr2L_5799278_5800043 chr2L_5799118_5799277 chr2L_5787965_5787984;chr2L_5800044_5800143 100.00 66.67 100.00 100.00 100.00 100.00 100.00 100.00 70.37 NA NA 100.00 92.86 92.31 100.00 94.74 92.31 100.00 100.00 92.31 100.00 83.33 100.00 88.89 NA 100.00 100.00 NA NA NA 90.00 NA 57.14 100.00 100.00 NA 87.50 NA NA 83.33 NA 87.50 100.00 100.00 NA 80.00 NA 100.00 94.12 NA NA 100.00 NA NA 92.31 NA NA 100.00 K alternative_donor CG17829 chrX + chrX_520827_520931 chrX_520854_520931 chrX_520932_521515;chrX_520537_520826 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA 100.00 100.00 NA 100.00 NA NA NA NA 100.00 NA 100.00 NA 100.00 NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 NA 90.00 NA NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA NA NA NA NA 100.00 NA K jcn_only_AD RpL36,RI_chrX_522912_523358,I_chrX_522932_523360,I_chrX_522949_523360 chrX - chrX_522912_523360;chrX_522912_523414;chrX_522912_523194;chrX_522912_523323;chrX_522912_523389 chrX_522912_523215 chrX_522849_522911;chrX_523415_523436 0.00 0.00 0.00 0.17 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.39 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.18 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.25 0.00 0.00 K alternative_donor LSm7 chr2L - chr2L_16742443_16742634;chr2L_16742443_16742662 chr2L_16742443_16742625 chr2L_16742326_16742442;chr2L_16742663_16742986 95.51 93.98 94.74 92.66 92.86 93.65 96.51 94.44 99.28 94.44 91.30 96.69 97.01 96.72 94.87 95.83 92.86 97.10 94.44 95.43 90.38 97.62 92.39 95.88 96.92 93.15 97.94 91.46 96.88 95.65 97.37 98.04 90.32 95.15 96.15 95.45 93.07 95.51 95.80 93.90 96.23 96.52 96.08 93.42 91.38 92.23 95.58 91.89 95.87 97.67 97.94 96.61 96.23 98.31 89.25 98.06 94.69 93.94 K alternative_acceptor CG30020,I_chr2R_6778098_6778140 chr2R + chr2R_6778765_6778915 chr2R_6778765_6778912 chr2R_6778492_6778764;chr2R_6778916_6779822 93.75 94.74 95.24 93.94 85.71 100.00 100.00 96.43 88.37 83.33 92.86 100.00 90.00 100.00 85.00 96.00 100.00 92.31 88.24 93.88 88.89 96.30 93.94 92.31 90.48 96.00 92.31 93.33 83.33 92.00 100.00 95.45 82.05 97.22 90.48 100.00 96.67 100.00 88.24 88.10 100.00 97.30 90.91 100.00 91.67 91.30 100.00 83.33 97.22 96.55 93.33 93.75 90.00 100.00 100.00 86.36 93.33 87.88 K intron_retention HP4,I_chr3L_7968788_7968857 chr3L - chr3L_7968788_7968861 chr3L_7968787_7968788;chr3L_7968861_7968862 chr3L_7968688_7968787;chr3L_7968862_7968957 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 1.43 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Khc-73 chr2R - chr2R_11418901_11419626 chr2R_11418900_11418901;chr2R_11419626_11419627 chr2R_11418640_11418900;chr2R_11419627_11419712 0.00 NA NA 5.88 NA NA NA 5.88 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA 6.25 0.00 0.00 NA NA 12.50 5.26 3.45 0.00 NA NA 11.11 0.00 0.00 20.00 NA NA NA 0.00 NA 0.00 NA NA NA 0.00 0.00 3.45 0.00 NA 0.00 NA NA NA NA NA NA 0.00 K alternative_acceptor Phax,RI_chr2R_5006333_5006392 chr2R + chr2R_5002689_5002743 chr2R_5002689_5002734 chr2R_5001956_5002688;chr2R_5002744_5002835 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention lt,I_chr2L_22817840_22817968,RI_chr2L_22820498_22823377,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22818231_22818297 chr2L_22818230_22818231;chr2L_22818297_22818298 chr2L_22818113_22818230;chr2L_22818298_22818651 0.00 0.00 0.00 0.00 0.00 0.00 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 1.33 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention F_chr3R_19799277_19802225,CG5902,Rab7 chr3R + chr3R_19812438_19812753 chr3R_19812437_19812438;chr3R_19812753_19812754 chr3R_19812343_19812437;chr3R_19812754_19812932 14.00 10.81 17.86 19.00 8.89 14.29 26.83 10.11 9.23 9.09 8.00 12.36 11.63 10.91 17.24 7.78 7.55 41.94 13.79 14.39 13.73 25.64 14.81 10.94 14.00 18.33 25.53 27.03 23.08 14.29 19.72 18.18 14.29 13.79 20.83 21.43 6.58 13.46 8.57 17.07 NA 12.24 11.11 12.07 13.79 13.33 16.36 NA 14.95 11.32 12.73 14.29 16.67 17.24 15.00 16.67 6.56 7.69 K cassette mrj,RI_chr2R_12093733_12108627,I_chr2R_12108697_12109174 chr2R - chr2R_12092537_12093214 chr2R_12092537_12092824;chr2R_12093086_12093214 chr2R_12092825_12093085 chr2R_12092330_12092536;chr2R_12093215_12093324 1.82 1.35 1.54 1.67 1.47 1.27 0.00 0.71 1.91 2.70 1.54 2.13 1.79 1.28 1.33 0.98 0.00 1.56 0.00 1.96 1.54 7.27 3.37 1.98 5.26 1.32 1.67 8.57 6.45 3.77 1.06 4.08 9.38 0.00 1.82 7.27 4.55 2.60 3.37 4.59 4.29 1.40 2.04 2.70 3.03 1.83 3.23 3.90 1.63 1.92 3.45 1.75 2.27 0.00 1.00 1.32 1.32 1.33 K alternative_donor eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20341925_20342041;chr3L_20341636_20342041;chr3L_20341509_20342041;chr3L_20341865_20342041;chr3L_20341486_20342041;chr3L_20341522_20342041;chr3L_20341751_20342041;chr3L_20341530_20342041;chr3L_20341629_20342041;chr3L_20341598_20342041 chr3L_20341759_20342041 chr3L_20342042_20342306;chr3L_20341482_20341485 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA Xrp1,I_chr3R_14741648_14750799,I_chr3R_14750298_14750799 chr3R + chr3R_14749868_14750799 chr3R_14749868_14750009 chr3R_14749792_14749867;chr3R_14750800_14750899 0.00 0.00 0.00 31.37 0.00 0.00 0.00 17.11 16.13 27.78 NA 16.44 43.24 22.92 0.00 0.00 0.00 NA 21.82 25.42 30.77 17.97 21.88 0.00 0.00 0.00 17.48 22.33 0.00 25.00 0.00 0.00 0.00 0.00 0.00 0.00 31.58 0.00 0.00 24.47 40.00 22.67 0.00 23.85 0.00 17.57 0.00 0.00 20.00 23.33 24.19 22.92 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Sec61beta,I_chr2R_10506408_10506473 chr2R + chr2R_10506676_10506738 chr2R_10506675_10506676;chr2R_10506738_10506739 chr2R_10506474_10506675;chr2R_10506739_10507186 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.77 0.52 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 1.77 1.14 1.35 1.26 0.35 0.00 0.00 0.25 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 K intron_retention Rab27,sta chrX - chrX_1368544_1368707 chrX_1368543_1368544;chrX_1368707_1368708 chrX_1367939_1368543;chrX_1368708_1368827 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 9.09 5.88 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 4.35 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 K jcn_only_AD CG9669,RI_chr3L_16837963_16838041,RI_chr3L_16837988_16838041 chr3L - chr3L_16837963_16838041 chr3L_16837963_16838019 chr3L_16837888_16837962;chr3L_16838042_16838062 88.48 87.50 83.82 89.60 77.97 78.00 88.74 89.44 88.40 89.36 94.12 94.26 90.11 85.90 88.12 89.81 89.33 87.50 95.51 90.60 83.05 NA 92.86 87.93 84.00 85.00 91.14 86.54 84.00 97.22 90.00 90.36 91.67 87.00 90.48 96.30 80.39 73.91 80.77 84.80 87.21 86.62 90.00 90.79 90.00 91.07 80.36 84.47 86.61 86.67 90.20 89.06 92.00 88.57 86.90 87.21 84.09 91.07 K intron_retention CG1440 chrX + chrX_8333792_8333851 chrX_8333791_8333792;chrX_8333851_8333852 chrX_8333142_8333791;chrX_8333852_8334327 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.36 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 2.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5196,pps chr3R + chr3R_8235162_8235996 chr3R_8235161_8235162;chr3R_8235996_8235997 chr3R_8234977_8235161;chr3R_8235997_8236078 0.00 0.00 0.00 0.80 1.18 4.88 0.00 1.61 1.36 0.00 2.82 1.45 0.00 4.92 0.00 0.00 1.45 6.38 0.00 0.00 0.00 3.28 0.00 2.60 4.08 0.00 2.38 0.00 0.00 2.90 3.85 4.08 1.19 2.94 0.00 1.19 2.33 0.00 0.00 0.00 0.00 2.24 0.00 0.00 0.00 0.00 0.00 6.38 1.53 1.45 0.00 0.00 0.00 0.00 1.12 0.00 2.38 0.00 K jcn_only_AA mei-P26 chrX + chrX_9060493_9060567 chrX_9060493_9060552 chrX_9059715_9060492;chrX_9060568_9061065 10.02 NA 16.67 10.53 NA 0.00 4.35 15.22 5.26 NA NA 5.26 15.00 12.50 4.00 15.00 13.64 5.00 10.64 15.38 5.00 NA 8.33 NA NA 8.00 4.76 NA NA NA 21.74 NA 6.90 15.56 NA NA NA NA NA 12.00 NA 8.77 27.27 NA NA NA NA 9.52 12.50 NA NA NA NA NA 8.00 NA NA NA K intron_retention Ptp99A,I_chr3R_25302126_25302175 chr3R + chr3R_25307479_25307589 chr3R_25307478_25307479;chr3R_25307589_25307590 chr3R_25307192_25307478;chr3R_25307590_25307930 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Unr,DMG4-MB6.chr3L.15.021 chr3L - chr3L_8429790_8429864 chr3L_8429811_8429864 chr3L_8429865_8430072;chr3L_8429346_8429789 47.62 NA NA NA NA NA NA NA 47.62 NA NA 40.91 NA NA NA NA NA NA NA 31.82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 52.17 45.00 NA 54.17 NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG32809,RI_chrX_1585391_1586471,a6,I_chrX_1589508_1589564 chrX - chrX_1589508_1589572 chrX_1589507_1589508;chrX_1589572_1589573 chrX_1589408_1589507;chrX_1589573_1589664 0.00 0.00 0.00 0.00 NA 0.00 0.00 9.52 0.00 0.00 NA 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA 5.13 0.00 0.00 0.00 0.00 14.81 47.06 3.23 0.00 0.00 NA 3.33 0.00 0.00 17.24 0.00 0.00 9.09 0.00 3.45 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4858,I_chr3L_20520381_20520577,EI_chr3L_20520642_20520692 chr3L + chr3L_20520381_20520692 chr3L_20520380_20520381;chr3L_20520692_20520693 chr3L_20520281_20520380;chr3L_20520693_20520792 0.00 1.32 0.00 1.41 0.00 0.00 3.17 0.00 3.28 0.00 0.00 0.84 2.04 0.00 1.52 1.20 0.00 0.00 0.00 1.35 2.00 0.00 1.94 0.00 0.00 0.00 0.85 2.04 0.00 0.00 0.00 0.00 2.97 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 1.75 0.00 2.52 1.52 1.95 0.00 1.55 1.04 2.47 2.41 0.00 0.00 0.00 0.00 0.88 0.00 2.47 K intron_retention Actn,I_chrX_1929229_1936079,I_chrX_1935678_1936079,I_chrX_1935889_1936079 chrX - chrX_1935678_1936079 chrX_1935677_1935678;chrX_1936079_1936080 chrX_1935578_1935677;chrX_1936080_1936110 56.66 NA NA NA NA NA 33.33 NA 60.00 NA NA 69.23 NA NA 46.15 66.67 NA NA NA 53.33 NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA 45.45 NA NA NA NA NA NA 66.67 NA NA NA NA NA NA 47.06 NA NA NA NA NA NA NA NA NA K jcn_only_AD slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,RI_chr2R_20289332_20289739,I_chr2R_20289332_20289846,I_chr2R_20289332_20290093 chr2R - chr2R_20289332_20290083;chr2R_20289332_20289739;chr2R_20289332_20290093 chr2R_20289332_20289846 chr2R_20289232_20289331;chr2R_20290094_20290193 4.17 NA NA 8.33 NA 4.17 4.88 7.32 13.24 NA NA 7.14 3.33 13.16 20.00 3.12 5.26 8.33 14.63 0.00 4.17 16.13 0.00 3.57 NA 8.82 0.00 4.35 NA 0.00 2.33 NA 0.00 2.00 3.45 0.00 0.00 NA NA 4.08 NA 6.25 7.41 9.52 NA 0.00 4.76 0.00 3.64 NA 2.56 6.25 4.55 NA 3.12 NA NA 3.23 K intron_retention mael chr3L + chr3L_22717501_22717583 chr3L_22717500_22717501;chr3L_22717583_22717584 chr3L_22717334_22717500;chr3L_22717584_22717785 100.00 100.00 100.00 100.00 100.00 100.00 97.67 98.00 100.00 100.00 95.00 100.00 100.00 96.77 96.88 97.44 100.00 100.00 100.00 98.46 94.74 100.00 100.00 100.00 100.00 96.15 100.00 100.00 96.00 100.00 100.00 96.43 96.97 98.21 100.00 100.00 95.24 100.00 95.65 92.50 96.00 98.04 100.00 100.00 95.65 100.00 100.00 98.04 95.74 100.00 100.00 100.00 100.00 91.67 100.00 95.83 94.12 97.92 K intron_retention CLIP-190,I_chr2L_17394493_17404060,I_chr2L_17401291_17404060,I_chr2L_17401582_17402303 chr2L + chr2L_17402486_17404060 chr2L_17402485_17402486;chr2L_17404060_17404061 chr2L_17402375_17402485;chr2L_17404061_17404076 23.61 NA NA 30.77 NA NA NA NA 33.33 NA NA 40.00 NA NA 33.33 NA NA NA NA 14.29 NA NA 20.00 11.11 NA NA 25.00 NA 20.00 66.67 NA NA 27.78 22.22 NA NA 28.57 NA 33.33 17.65 NA 28.57 NA NA 7.41 20.00 21.43 NA 26.67 NA 16.67 NA NA NA NA NA NA 14.29 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2813977;chr2R_2814097_2814174;chr2R_2814327_2816013;chr2R_2816342_2817327;chr2R_2817604_2817753 chr2R_2813978_2814096;chr2R_2814175_2814326;chr2R_2816014_2816341;chr2R_2817328_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG31716,I_chr2L_10397648_10398034 chr2L + chr2L_10399689_10399767;chr2L_10399677_10399767 chr2L_10399713_10399767 chr2L_10399768_10400679;chr2L_10399595_10399676 25.32 24.04 24.35 17.76 25.24 22.64 31.97 24.10 23.70 24.29 21.67 24.78 31.01 21.57 20.00 30.68 29.90 24.32 28.06 25.45 20.37 34.29 26.43 22.31 28.89 21.24 19.83 27.27 50.00 28.07 29.11 36.14 26.81 24.04 28.09 11.88 25.93 30.77 26.11 27.66 15.91 25.94 25.26 23.97 21.57 33.08 NA 36.31 25.23 20.00 29.79 15.19 30.88 25.37 22.48 21.05 27.47 29.70 K jcn_only_AD CG31673,RI_chr2L_20830210_20830280 chr2L + chr2L_20830794_20830860 chr2L_20830797_20830860 chr2L_20830861_20830928;chr2L_20830728_20830793 98.95 98.85 99.31 98.63 98.33 100.00 98.67 99.20 99.77 100.00 98.84 98.87 100.00 98.84 99.21 99.20 100.00 99.51 98.46 99.55 99.53 98.82 97.55 98.46 98.89 99.56 98.80 99.02 99.37 98.88 98.71 99.04 98.02 98.50 99.05 99.52 98.76 100.00 98.95 97.73 99.22 99.34 97.27 98.83 97.70 100.00 99.69 97.98 98.21 98.92 99.64 97.63 98.33 100.00 99.00 99.00 99.17 98.35 K alternative_donor dream chr2R - chr2R_1909388_1909452 chr2R_1909388_1909442 chr2R_1908976_1909387;chr2R_1909453_1910748 98.72 100.00 100.00 100.00 93.33 94.44 94.74 93.48 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 88.24 94.74 100.00 100.00 93.33 100.00 94.44 NA 88.89 94.44 87.50 87.50 100.00 100.00 83.33 93.33 100.00 100.00 NA 100.00 92.86 95.65 100.00 88.89 91.89 95.00 95.24 90.00 100.00 100.00 93.75 97.44 100.00 100.00 100.00 NA 87.50 92.00 100.00 91.67 100.00 K intron_retention CSN8,I_chr2L_8365282_8365388,I_chr2L_8367210_8367311 chr2L + chr2L_8365329_8365388 chr2L_8365328_8365329;chr2L_8365388_8365389 chr2L_8365282_8365328;chr2L_8365389_8365488 2.27 0.00 0.00 18.06 0.00 0.00 6.94 4.94 2.94 0.00 4.35 1.16 10.53 2.63 4.08 2.27 6.82 0.00 1.67 4.88 0.00 10.53 1.64 3.17 11.54 18.75 0.00 2.56 11.11 2.78 1.82 1.32 0.00 0.00 0.00 8.82 8.33 0.00 2.27 2.17 19.51 2.17 0.00 1.82 3.51 0.97 1.82 0.00 4.12 2.74 4.17 2.94 2.17 4.92 4.76 3.75 2.11 2.16 K intron_retention CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908142_9908424,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907784_9908307 chr2L_9907783_9907784;chr2L_9908307_9908308 chr2L_9907756_9907783;chr2L_9908308_9908649 81.53 NA NA 90.00 NA NA 84.62 71.43 65.00 NA NA 83.33 NA 90.00 NA 63.64 NA 77.78 72.73 90.00 NA 85.71 80.00 NA NA NA NA NA NA 88.89 88.89 NA 92.86 75.00 NA NA NA NA NA 75.00 NA 81.25 NA NA NA NA NA NA 81.82 NA 80.00 NA NA NA NA NA NA NA K cassette Mical,I_chr3R_5834577_5835458,RI_chr3R_5842549_5844218,I_chr3R_5843939_5844218,I_chr3R_5847106_5863537,I_chr3R_5863483_5863537,I_chr3R_5863613_5868513 chr3R - chr3R_5841649_5844218 chr3R_5841649_5842011;chr3R_5842549_5844218 chr3R_5842012_5842548 chr3R_5841385_5841648;chr3R_5844219_5844280 88.64 95.65 92.00 94.44 72.73 95.45 71.43 91.18 87.04 96.00 80.00 86.36 50.00 86.96 88.00 93.33 94.44 86.36 80.77 94.55 87.50 84.91 80.00 87.50 95.00 84.62 92.59 75.00 88.64 89.74 85.71 91.67 84.78 89.74 96.43 94.44 83.33 77.78 84.09 80.00 85.00 87.50 94.44 93.55 93.33 81.82 100.00 92.45 94.00 75.00 88.10 89.47 95.24 88.89 96.88 80.00 90.00 96.30 N intron_retention AnnIX,I_chr3R_16895383_16895999 chr3R + chr3R_16895383_16896445 chr3R_16895382_16895383;chr3R_16896445_16896446 chr3R_16895283_16895382;chr3R_16896446_16896495 100.00 89.53 100.00 89.55 100.00 100.00 92.90 91.67 94.49 100.00 85.88 95.48 90.53 100.00 100.00 100.00 85.19 100.00 100.00 91.28 86.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 86.57 88.54 100.00 100.00 92.96 100.00 100.00 88.06 100.00 100.00 100.00 100.00 86.34 100.00 100.00 100.00 92.31 90.70 100.00 92.74 100.00 94.06 84.75 100.00 91.82 88.75 89.92 89.55 100.00 K intron_retention par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,I_chr2R_15355073_15356294,RI_chr2R_15355419_15356294,I_chr2R_15359251_15360944,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15353200_15358101 chr2R_15353199_15353200;chr2R_15358101_15358102 chr2R_15353143_15353199;chr2R_15358102_15358317 0.00 3.85 0.00 0.00 0.00 0.00 0.00 4.17 1.85 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 NA 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG18815 chr3L + chr3L_11621227_11621442 chr3L_11621237_11621442 chr3L_11621443_11621601;chr3L_11621168_11621226 98.04 98.55 98.36 97.39 98.00 97.73 97.22 98.94 98.00 97.14 98.57 99.33 97.01 98.04 93.98 98.86 96.83 98.57 100.00 98.21 98.61 92.98 96.00 98.78 98.15 96.77 98.51 100.00 98.04 98.04 95.38 100.00 97.92 96.12 97.37 97.96 99.00 98.51 98.84 98.82 96.97 97.79 98.11 100.00 95.52 97.53 96.34 97.44 96.90 98.28 98.81 98.48 95.95 98.08 100.00 98.55 98.82 97.96 K intron_retention Smc5,I_chr3L_21566234_21566275 chr3L + chr3L_21566234_21566289 chr3L_21566233_21566234;chr3L_21566289_21566290 chr3L_21566134_21566233;chr3L_21566290_21566375 9.76 3.92 5.77 9.46 7.89 10.53 21.57 9.46 9.78 15.79 13.16 11.54 2.78 0.00 6.98 5.08 8.11 8.00 5.45 10.20 13.33 7.41 11.54 6.78 31.82 19.51 8.96 9.68 19.51 16.13 12.28 6.90 11.63 6.35 18.18 29.73 7.04 11.54 4.11 11.67 34.38 9.76 15.62 0.00 16.67 4.00 7.14 11.76 10.71 9.52 8.24 13.64 6.82 5.71 10.64 11.67 9.78 4.88 N intron_retention spin,I_chr2R_12013288_12013847 chr2R + chr2R_12019405_12023531 chr2R_12019404_12019405;chr2R_12023531_12023532 chr2R_12019047_12019404;chr2R_12023532_12023630 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA 48.15 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA K jcn_only_AA lilli chr2L + chr2L_2886579_2946708 chr2L_2886579_2889673 chr2L_2885970_2886578 94.44 NA NA 95.65 NA NA 90.91 100.00 90.38 NA NA 96.30 91.30 NA NA 95.12 NA NA 95.83 88.46 NA NA NA NA NA NA NA NA NA NA NA NA 91.67 94.44 NA NA NA NA NA NA NA 96.67 NA NA NA NA NA NA 90.32 NA NA NA NA NA NA NA NA NA K jcn_only_AD pigeon chr2L + chr2L_19187018_19187078 chr2L_19187021_19187078 chr2L_19187079_19188242;chr2L_19186980_19187017 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA 100.00 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA 100.00 100.00 NA 100.00 NA 100.00 NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA K alternative_donor vlc chr2R + chr2R_1589953_1590371;chr2R_1589894_1590371;chr2R_1589799_1590371;chr2R_1589805_1590371;chr2R_1590318_1590371;chr2R_1590294_1590371;chr2R_1589722_1590371;chr2R_1589693_1590371 chr2R_1589807_1590371 chr2R_1590372_1590451;chr2R_1589612_1589692 0.00 0.00 2.56 1.52 0.00 0.00 0.00 0.00 1.27 0.00 0.00 1.33 0.00 2.33 0.00 0.00 0.00 2.50 2.08 1.47 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Trf2,I_chrX_8318346_8318408 chrX + chrX_8304723_8312383 chrX_8304722_8304723;chrX_8312383_8312384 chrX_8304315_8304722;chrX_8312384_8312459 16.67 NA NA 36.36 NA NA 7.69 19.05 16.67 NA NA NA NA NA NA 22.22 NA NA NA 17.65 NA NA NA NA NA NA NA NA NA NA NA NA NA 22.22 NA NA NA NA NA 16.67 NA NA NA 0.00 NA NA NA 14.81 NA NA NA NA NA NA NA NA NA 10.53 N cassette I_chr2R_5999081_6000140,E_chr2R_6001157_6001630,CG11866 chr2R + chr2R_6005374_6006983 chr2R_6005374_6005536;chr2R_6006048_6006983 chr2R_6005537_6006047 chr2R_6005198_6005373;chr2R_6006984_6007232 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.35 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Ras85D,I_chr3R_5338175_5338299 chr3R - chr3R_5337404_5337461 chr3R_5337403_5337404;chr3R_5337461_5337462 chr3R_5337326_5337403;chr3R_5337462_5337529 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.78 0.00 0.53 0.00 0.00 0.00 0.27 0.00 0.68 0.00 0.52 0.40 0.00 1.02 3.07 1.23 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.68 0.00 0.44 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.00 0.24 K jcn_only_AD Cip4,I_chr3L_4325411_4326640,I_chr3L_4363128_4363769,I_chr3L_4363386_4363987 chr3L - chr3L_4325411_4326983 chr3L_4325411_4326208 chr3L_4325311_4325410 0.00 0.00 0.76 2.73 0.00 0.00 0.28 0.00 0.52 0.00 0.00 1.03 0.00 0.00 0.00 0.38 0.00 0.00 0.50 0.64 0.00 0.00 0.47 0.00 0.00 0.00 0.00 1.32 0.00 0.60 0.00 0.00 0.00 1.50 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.44 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG13902,I_chr3L_840962_841041 chr3L - chr3L_840970_841041;chr3L_840991_841041 chr3L_840962_841041 chr3L_841042_841141;chr3L_840862_840961 2.92 0.00 9.38 0.00 NA 9.52 2.94 1.39 2.56 0.00 0.00 0.00 3.23 0.00 2.56 4.88 0.00 7.89 0.00 3.23 8.33 13.64 2.94 0.00 4.76 2.78 0.00 0.00 6.25 2.04 8.33 6.25 1.82 3.85 0.00 2.33 9.76 12.00 2.70 3.03 0.00 1.27 3.33 2.33 6.52 2.90 4.76 2.82 6.25 0.00 6.98 3.45 4.55 14.29 4.08 0.00 3.45 1.41 K jcn_only_AD Tao-1,I_chrX_19471628_19472934 chrX - chrX_19471628_19473780 chrX_19471628_19473430 chrX_19471528_19471627;chrX_19473781_19473835 98.18 94.79 96.92 95.91 100.00 95.80 92.24 92.99 94.90 98.94 100.00 100.00 96.88 98.86 95.97 93.90 98.46 95.77 95.45 92.96 98.95 94.83 100.00 98.85 100.00 96.23 100.00 100.00 98.50 100.00 95.59 94.52 98.56 96.74 99.28 99.21 97.78 98.77 100.00 99.38 100.00 95.83 97.83 98.92 97.17 96.97 98.28 98.12 95.67 97.96 98.53 98.28 100.00 98.18 97.35 100.00 100.00 98.11 K alternative_acceptor blp,EI_chr3R_11759655_11759701,Sap47 chr3R + chr3R_11759655_11759724 chr3R_11759655_11759721 chr3R_11759632_11759654;chr3R_11759725_11759801 84.62 92.86 94.12 85.19 76.92 84.21 82.86 97.22 81.63 90.91 84.62 83.72 92.86 82.35 90.48 82.69 82.35 80.95 91.67 87.04 80.00 76.00 85.71 85.00 84.62 81.82 94.74 87.50 94.74 81.82 82.14 80.00 80.65 82.50 71.43 78.95 78.95 61.54 87.50 90.32 93.33 91.49 93.75 78.95 90.48 83.72 71.43 89.66 88.10 92.31 87.50 85.00 89.47 82.61 78.57 82.14 85.71 78.12 K intron_retention Fkbp13 chr2R - chr2R_17375712_17375777 chr2R_17375711_17375712;chr2R_17375777_17375778 chr2R_17375524_17375711;chr2R_17375778_17375866 0.00 0.00 0.00 0.59 0.00 0.47 0.00 0.00 0.24 1.07 0.00 0.56 0.00 0.00 0.00 0.27 0.00 0.00 0.53 0.27 0.00 0.41 0.00 0.00 0.00 0.00 0.98 0.87 1.25 0.84 0.00 0.40 0.51 0.00 0.00 0.88 0.00 0.56 0.46 0.21 0.73 0.23 0.00 0.33 0.00 0.52 0.19 0.63 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.37 0.21 N jcn_only_AA CG13602,I_chr3R_19753657_19753715 chr3R - chr3R_19754473_19754558 chr3R_19754502_19754558 chr3R_19754559_19754569;chr3R_19754464_19754472 80.95 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.95 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG3408,I_chr3L_9501587_9501663,RI_chr3L_9501725_9502450,I_chr3L_9504402_9504516 chr3L - chr3L_9501587_9501664 chr3L_9501586_9501587;chr3L_9501664_9501665 chr3L_9501487_9501586;chr3L_9501665_9501724 4.35 NA NA 7.14 NA NA 0.00 0.00 4.35 NA NA 8.33 NA NA 0.00 NA NA NA NA 10.53 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 12.50 NA 0.00 NA 0.00 NA 0.00 NA 10.00 4.76 NA 17.65 NA NA NA NA NA NA 15.38 K alternative_acceptor CG5482,I_chr2R_14519136_14519239 chr2R - chr2R_14519136_14519254 chr2R_14519141_14519254 chr2R_14519255_14519262;chr2R_14519036_14519135 1.67 3.70 0.00 5.00 0.00 0.00 4.65 3.23 1.85 NA 4.55 7.27 4.76 0.00 2.78 2.90 4.76 0.00 3.23 2.53 0.00 4.55 2.22 4.76 0.00 0.00 2.78 NA 0.00 0.00 2.33 0.00 NA 0.00 0.00 6.67 6.67 0.00 0.00 2.70 NA 1.67 0.00 0.00 0.00 2.63 0.00 0.00 1.59 0.00 2.56 0.00 4.17 0.00 4.08 0.00 5.88 0.00 K alternative_donor rdgB,noncoding_23582 chrX + chrX_13668012_13670708 chrX_13670414_13670708 chrX_13670709_13670773;chrX_13667839_13668011 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 88.89 100.00 100.00 100.00 K multi_cassette CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2436229_2459590 chr3L_2436229_2439498;chr3L_2439831_2443389;chr3L_2443839_2443987;chr3L_2444088_2444498;chr3L_2446102_2459590 chr3L_2439499_2439830;chr3L_2443390_2443838;chr3L_2443988_2444087;chr3L_2444499_2446101 chr3L_2436209_2436228;chr3L_2459591_2459690 100.00 100.00 83.33 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 90.00 80.00 83.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 87.50 100.00 100.00 95.24 100.00 90.00 100.00 100.00 100.00 100.00 87.50 88.89 91.67 88.89 92.31 92.31 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 90.91 100.00 100.00 100.00 100.00 85.71 100.00 100.00 K multi_cassette trx chr3R - chr3R_10101091_10111930 chr3R_10101091_10102027;chr3R_10103265_10104814;chr3R_10105264_10111930 chr3R_10102028_10103264;chr3R_10104815_10105263 chr3R_10099914_10101090;chr3R_10111931_10112601 100.00 100.00 100.00 96.67 100.00 100.00 92.59 100.00 97.67 100.00 91.67 97.22 100.00 100.00 100.00 96.43 100.00 92.31 94.12 100.00 90.00 95.83 96.77 93.75 93.33 100.00 100.00 88.24 100.00 90.00 100.00 100.00 95.24 100.00 100.00 95.00 95.83 100.00 100.00 100.00 100.00 100.00 93.75 94.74 100.00 100.00 100.00 94.74 96.88 100.00 95.24 90.00 100.00 NA 95.00 100.00 100.00 100.00 K intron_retention eIF-4a,I_chr2L_5981836_5984010,I_chr2L_5983941_5984010,I_chr2L_5983591_5984010,I_chr2L_5985221_5985289 chr2L + chr2L_5983237_5984010 chr2L_5983236_5983237;chr2L_5984010_5984011 chr2L_5983010_5983236;chr2L_5984011_5984110 0.03 0.05 0.06 0.04 0.02 0.00 0.03 0.02 0.01 0.10 0.00 0.00 0.04 0.00 0.05 0.00 0.00 0.00 0.07 0.01 0.00 0.15 0.05 0.05 0.00 0.03 0.08 0.44 0.27 0.12 0.08 0.00 0.16 0.04 0.00 0.00 0.02 0.04 0.07 0.08 0.09 0.03 0.00 0.00 0.14 0.00 0.06 0.00 0.05 0.11 0.06 0.00 0.09 0.00 0.00 0.00 0.00 0.00 K intron_retention elm chr3R - chr3R_1478257_1478926 chr3R_1478256_1478257;chr3R_1478926_1478927 chr3R_1478103_1478256;chr3R_1478927_1479476 98.80 99.09 100.00 100.00 100.00 99.14 99.48 98.48 99.32 98.63 96.67 99.07 100.00 100.00 98.63 96.71 99.04 96.55 99.33 98.54 97.27 98.68 98.06 99.05 98.73 99.18 99.01 98.78 97.56 98.59 97.14 96.10 98.01 98.56 100.00 100.00 97.42 93.94 98.00 99.22 99.07 99.27 98.33 96.23 97.00 96.90 99.24 98.80 98.78 98.84 100.00 98.80 97.06 97.10 99.38 99.14 99.43 99.33 K jcn_only_AA CG1637,I_chrX_10767807_10771447 chrX - chrX_10766073_10771447;chrX_10767742_10771447;chrX_10770033_10771447 chrX_10770030_10771447 chrX_10771448_10771547 13.12 9.02 11.35 0.51 13.28 10.32 7.14 7.04 13.12 32.88 20.35 12.98 3.91 14.09 13.66 10.71 13.68 17.80 6.88 12.43 26.96 15.86 12.50 14.63 9.45 4.27 11.06 10.69 14.63 9.77 13.18 22.22 14.78 9.25 11.89 18.40 19.87 14.08 19.50 28.99 18.87 8.36 14.15 13.71 15.94 18.75 8.76 27.27 13.60 8.67 8.41 10.71 11.43 16.18 8.04 12.28 7.85 16.50 K intron_retention Atx-1,Atx-1_CG4542 chrX + chrX_6717389_6717445 chrX_6717388_6717389;chrX_6717445_6717446 chrX_6717249_6717388;chrX_6717446_6717671 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Osi19 chr3R + chr3R_2161894_2162001 chr3R_2161893_2161894;chr3R_2162001_2162002 chr3R_2161644_2161893;chr3R_2162002_2162010 36.61 NA NA 69.23 NA NA NA 30.77 33.33 NA NA 37.50 NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA 46.67 NA NA 14.29 NA NA NA NA 50.00 NA NA NA NA 35.71 NA NA NA K alternative_acceptor I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_927771_929704,CG32021,RI_chr4_928193_928245,I_chr4_928482_929704,noncoding_20815,I_chr4_929811_932812 chr4 - chr4_927771_929704;chr4_928551_929704 chr4_928482_929704 chr4_929705_929804;chr4_927741_927770 25.30 35.19 14.63 49.02 24.24 21.21 21.30 9.62 16.16 17.91 67.50 21.84 31.03 33.33 40.00 46.81 31.03 13.89 50.00 43.12 24.24 23.50 47.32 26.37 21.52 14.71 17.74 34.48 35.45 22.62 29.76 NA 21.95 18.18 15.25 27.17 40.00 21.62 21.95 14.39 39.29 27.06 12.90 35.17 42.86 11.65 40.28 28.80 32.88 20.91 20.62 10.71 35.56 21.05 16.28 42.42 40.00 50.77 K jcn_only_AD CG31777,RI_chr2L_3706792_3706842,cutlet chr2L - chr2L_3706792_3706921 chr2L_3706792_3706842 chr2L_3706692_3706791;chr2L_3706922_3706942 2.23 0.74 2.82 1.08 4.11 2.86 2.41 3.72 4.51 5.63 3.76 2.50 7.23 4.05 4.55 6.31 2.06 5.03 4.26 0.80 6.12 0.00 2.68 3.20 0.63 1.23 1.49 0.00 0.00 1.82 1.42 0.66 0.91 5.23 3.31 0.00 1.89 1.11 1.05 1.37 1.22 3.65 4.21 2.23 1.51 1.86 1.51 1.09 1.84 2.52 2.53 2.78 0.87 0.76 3.39 2.00 5.02 4.29 K jcn_only_AD Cdk4,RI_chr2R_12471503_12471656 chr2R + chr2R_12467202_12468346;chr2R_12467432_12468346;chr2R_12467241_12468346;chr2R_12467474_12468346;chr2R_12467225_12468346;chr2R_12467227_12468346;chr2R_12467261_12468346;chr2R_12467039_12468346 chr2R_12467275_12468346 chr2R_12468347_12468520;chr2R_12467030_12467038 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 3.33 1.67 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 3.33 NA NA 0.00 3.45 0.00 0.00 NA NA 0.00 0.00 0.00 3.23 K intron_retention CG7028,I_chr3L_207277_208117 chr3L - chr3L_210400_210475 chr3L_210399_210400;chr3L_210475_210476 chr3L_209784_210399;chr3L_210476_210738 72.22 77.50 80.00 92.00 76.67 87.50 82.86 82.35 77.27 68.42 77.78 79.25 85.19 82.14 82.50 93.10 69.57 86.96 82.14 75.58 89.47 67.57 67.80 72.22 46.15 70.00 83.33 87.50 60.78 66.67 43.10 55.56 77.78 75.68 74.07 41.86 70.15 67.57 56.36 68.25 59.09 68.75 84.62 70.59 45.00 69.70 66.67 64.29 72.55 78.12 68.00 84.62 58.62 66.67 78.12 65.22 70.83 70.73 K intron_retention Mtl,I_chr3R_23462559_23463794 chr3R + chr3R_23464028_23464100 chr3R_23464027_23464028;chr3R_23464100_23464101 chr3R_23463795_23464027;chr3R_23464101_23464261 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor pho,I_chr4_1193830_1201673,RI_chr4_1201895_1202215 chr4 - chr4_1201908_1202215 chr4_1201908_1201993 chr4_1201674_1201907;chr4_1202216_1202221 100.00 100.00 100.00 100.00 NA 100.00 94.74 100.00 95.65 NA NA 90.00 100.00 100.00 NA 100.00 NA NA 100.00 87.50 NA NA 100.00 100.00 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 92.86 100.00 100.00 100.00 NA NA NA NA NA 100.00 K intron_retention CG2765,RI_chr2R_20849027_20852094,I_chr2R_20849271_20849626,I_chr2R_20849271_20850005,E_chr2R_20849271_20850693,E_chr2R_20849271_20851166,E_chr2R_20849271_20852090,E_chr2R_20851190_20852094 chr2R - chr2R_20849271_20850005 chr2R_20849270_20849271;chr2R_20850005_20850006 chr2R_20849171_20849270;chr2R_20850006_20850105 92.31 88.89 NA 88.89 NA NA 88.89 NA 92.31 NA NA 93.33 NA NA 100.00 100.00 NA NA NA 92.31 77.78 93.33 94.44 91.67 100.00 100.00 100.00 90.91 NA NA 100.00 NA 100.00 88.89 NA 80.00 80.00 NA 90.00 94.44 NA 100.00 NA 91.67 NA NA NA NA 90.00 87.50 93.33 NA NA NA NA NA NA NA K jcn_only_AD RpL10Ab,snoRNA:Psi18S-920 chr3L + chr3L_11815991_11816299 chr3L_11816042_11816299 chr3L_11816300_11816370;chr3L_11815955_11815990 0.04 0.00 0.00 0.00 0.10 0.00 0.36 0.10 0.00 0.13 0.00 0.19 0.00 0.00 0.00 0.09 0.00 0.11 0.00 0.14 0.00 0.20 0.00 0.97 1.05 0.09 NA 0.08 0.11 0.00 0.33 0.04 0.06 0.04 0.00 0.20 0.00 0.00 0.00 0.00 0.04 0.05 0.00 0.00 0.06 0.00 2.13 0.00 0.19 2.56 2.33 0.00 0.00 NA 0.00 0.00 0.87 0.08 K intron_retention CG30390,CG9752 chr2R - chr2R_17182872_17182964 chr2R_17182871_17182872;chr2R_17182964_17182965 chr2R_17182772_17182871;chr2R_17182965_17183092 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.44 100.00 100.00 100.00 100.00 100.00 98.25 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 98.46 K alternative_donor CG4272 chr2L + chr2L_2365902_2366274;chr2L_2365391_2366274 chr2L_2365729_2366274 chr2L_2366275_2368213;chr2L_2365332_2365390 77.78 72.22 93.33 81.25 78.57 78.57 68.97 81.08 80.85 84.62 75.00 75.00 73.91 90.48 88.89 75.00 73.33 77.78 73.91 88.57 60.00 50.00 77.78 75.00 91.67 68.75 75.00 82.35 64.29 83.33 76.19 83.33 78.26 75.86 88.24 68.42 76.47 80.00 88.24 77.42 54.55 79.49 83.33 84.21 85.71 71.43 83.33 73.33 72.73 78.57 76.92 87.50 77.78 85.71 69.57 78.57 81.82 73.68 K multi_cassette sdk,I_chrX_625220_634459,I_chrX_636395_636562 chrX + chrX_625220_634459 chrX_625220_631201;chrX_631322_631542;chrX_631699_634459 chrX_631202_631321;chrX_631543_631698 chrX_625214_625219;chrX_634460_634559 83.33 80.00 83.33 60.00 NA 75.00 NA 100.00 88.89 75.00 NA 83.33 75.00 75.00 100.00 75.00 100.00 NA 75.00 85.71 100.00 57.14 87.50 80.00 NA NA 75.00 75.00 80.00 90.00 100.00 NA 83.33 75.00 75.00 NA 75.00 80.00 100.00 100.00 NA 83.33 NA 83.33 NA NA NA 85.71 83.33 NA 83.33 NA NA NA 75.00 NA NA NA K cassette toc chr2L - chr2L_3094376_3108724 chr2L_3094376_3097921;chr2L_3098066_3108724 chr2L_3097922_3098065 chr2L_3094217_3094375;chr2L_3108725_3108828 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 NA 100.00 100.00 87.50 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention l(1)dd4 chrX - chrX_13637768_13638316 chrX_13637767_13637768;chrX_13638316_13638317 chrX_13636349_13637767;chrX_13638317_13638763 0.00 5.00 0.00 0.00 NA NA 7.41 0.00 0.00 NA 0.00 2.56 0.00 0.00 0.00 3.23 0.00 0.00 NA 1.92 NA 0.00 0.00 0.00 NA 0.00 NA NA NA NA 10.00 NA 0.00 0.00 NA NA 0.00 NA 5.88 0.00 NA 5.88 0.00 0.00 NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA K intron_retention CG15747 chrX + chrX_13234461_13234550 chrX_13234460_13234461;chrX_13234550_13234551 chrX_13234198_13234460;chrX_13234551_13235028 90.00 NA NA 95.45 NA NA 100.00 85.71 100.00 NA NA 100.00 NA NA 88.89 82.35 NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA 87.50 NA NA 100.00 NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA 88.89 NA N alternative_donor blow,RI_chr2R_3470434_3470776 chr2R - chr2R_3472863_3474487 chr2R_3472863_3474436 chr2R_3472561_3472862;chr2R_3474488_3474581 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 78.85 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor Pp2A-29B,I_chr2L_8366082_8366148,I_chr2L_8367210_8367311,I_chr2L_8369561_8369715 chr2L + chr2L_8366082_8366148 chr2L_8366082_8366137 chr2L_8366075_8366081;chr2L_8366149_8366248 98.89 100.00 98.72 100.00 100.00 98.21 97.58 99.26 99.04 100.00 100.00 97.90 98.88 98.89 100.00 100.00 98.73 98.31 99.00 98.34 98.57 98.31 100.00 100.00 98.39 100.00 100.00 96.55 100.00 100.00 98.18 100.00 98.85 100.00 98.18 98.55 98.46 100.00 100.00 95.00 98.18 97.90 98.48 98.75 100.00 98.72 98.55 97.59 99.38 98.61 100.00 100.00 100.00 100.00 99.07 100.00 98.65 98.68 K intron_retention Mob2,RI_chr3L_11520443_11527440,CE_chr3L_11520917_11527526,RE_chr3L_11520925_11527489,RI_chr3L_11535932_11545929 chr3L - chr3L_11520443_11520554 chr3L_11520442_11520443;chr3L_11520554_11520555 chr3L_11520343_11520442;chr3L_11520555_11520906 1.61 2.82 0.00 2.70 0.00 0.00 4.17 2.02 1.97 0.00 0.00 2.27 5.66 0.00 0.00 2.44 3.23 0.00 0.00 1.68 0.00 2.15 0.00 1.35 3.03 0.00 2.13 4.00 0.00 0.00 0.00 4.44 5.66 2.75 0.00 0.00 0.00 2.56 0.00 2.41 0.00 1.69 2.00 0.00 0.00 3.75 3.03 4.17 1.61 3.03 2.82 1.92 0.00 0.00 4.76 0.00 0.00 0.00 K intron_retention Rm62,RI_chr3R_1834029_1834277 chr3R - chr3R_1834029_1834272 chr3R_1834028_1834029;chr3R_1834272_1834273 chr3R_1833929_1834028;chr3R_1834273_1834276 44.45 62.50 NA 43.90 47.62 53.33 77.36 42.86 50.00 21.15 47.06 68.00 NA 58.33 36.36 28.12 53.33 46.67 52.38 56.25 52.94 NA 66.67 68.00 75.00 74.36 68.97 14.29 41.77 23.91 42.31 15.38 13.76 27.03 38.10 45.00 68.97 59.09 63.64 4.74 40.82 34.09 40.91 11.69 12.50 23.40 66.67 12.93 35.00 33.33 68.75 36.84 17.91 78.57 42.86 47.62 50.00 12.68 K intron_retention kal-1 chr3R + chr3R_19972025_19972087 chr3R_19972024_19972025;chr3R_19972087_19972088 chr3R_19971831_19972024;chr3R_19972088_19972461 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.29 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Ect4,I_chr3L_8075556_8086158,C_chr3L_8091754_8101552,I_chr3L_8091826_8092243,I_chr3L_8098397_8101385,I_chr3L_8098758_8101738,I_chr3L_8100030_8101385 chr3L + chr3L_8092637_8095992 chr3L_8095662_8095992 chr3L_8095993_8097918 1.05 1.43 5.58 6.91 0.00 0.00 3.68 2.69 0.00 1.25 0.97 0.72 0.00 1.61 0.53 1.27 2.22 2.16 1.84 0.89 0.88 6.41 1.45 1.40 0.00 1.34 1.17 3.37 0.37 0.34 0.00 0.00 0.90 0.90 1.49 2.74 1.05 0.60 2.87 1.17 2.75 2.35 0.95 0.68 1.71 0.86 1.45 0.51 0.70 3.95 0.95 0.00 0.00 2.47 2.47 0.00 0.00 0.00 K intron_retention CG5445,I_chrX_17198393_17198730 chrX + chrX_17198404_17198730 chrX_17198403_17198404;chrX_17198730_17198731 chrX_17198108_17198403;chrX_17198731_17198830 0.00 2.08 0.00 0.00 2.70 0.00 5.26 0.00 0.00 0.00 0.00 3.08 10.53 0.00 0.00 0.00 0.00 2.86 0.00 1.33 0.00 7.69 0.00 0.00 2.70 0.00 4.48 1.64 5.77 2.13 0.00 0.00 0.00 0.00 0.00 0.00 1.19 3.57 0.84 4.44 0.00 2.56 NA 0.00 0.00 0.00 0.00 4.76 2.17 2.86 0.00 0.00 2.00 0.00 0.00 2.13 3.12 7.14 K jcn_only_AA CG10737 chr2R + chr2R_15062754_15063752;chr2R_15062754_15063770 chr2R_15062754_15063692 chr2R_15062592_15062753;chr2R_15063771_15063852 94.25 92.31 91.23 89.13 92.68 100.00 86.36 96.61 91.53 97.50 96.36 93.90 97.22 96.15 97.06 84.00 97.73 94.55 97.78 91.30 86.11 84.95 95.69 97.22 97.83 95.83 96.59 91.43 98.36 93.55 95.92 98.25 61.29 86.67 91.11 98.00 94.25 91.86 95.37 93.10 100.00 91.49 86.21 97.89 84.13 98.95 97.53 91.30 91.51 95.45 94.85 92.00 92.65 93.94 96.36 89.47 95.24 92.74 K intron_retention I_chrX_1757755_1757801,Pgam5,I_chrX_1793073_1794406,RI_chrX_1795648_1795745 chrX - chrX_1766940_1767005 chrX_1766939_1766940;chrX_1767005_1767006 chrX_1766389_1766939;chrX_1767006_1767583 3.45 0.00 3.57 31.25 3.45 0.00 0.00 7.14 1.39 8.33 7.41 4.48 0.00 0.00 7.02 3.12 0.00 6.25 3.45 7.41 0.00 3.92 5.41 1.98 2.00 2.86 27.27 30.56 7.32 3.57 5.26 2.13 0.00 1.92 5.88 15.22 6.35 1.49 1.08 3.45 6.32 3.90 0.00 0.00 0.00 4.60 1.39 0.00 2.90 3.23 6.15 0.00 0.00 3.57 2.50 3.80 0.98 3.51 K intron_retention lola,I_chr2R_6380094_6419543,I_chr2R_6380747_6419543,I_chr2R_6394546_6419543,I_chr2R_6404486_6419543,R_chr2R_6408775_6419537,I_chr2R_6409616_6419543,I_chr2R_6413368_6414281,I_chr2R_6419625_6419686,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6406881_6419543 chr2R_6406880_6406881;chr2R_6419543_6419544 chr2R_6406818_6406880;chr2R_6419544_6419624 22.73 24.14 26.32 23.29 30.77 29.73 26.09 19.42 27.66 20.00 34.48 17.24 23.26 42.86 20.37 44.26 14.63 16.07 23.26 15.56 16.67 6.76 32.69 22.73 21.62 44.44 41.94 38.24 11.11 7.94 24.44 9.33 10.16 27.14 28.57 21.43 32.08 23.68 24.07 17.76 6.35 22.22 23.08 24.49 6.19 7.23 14.29 9.74 23.71 10.81 24.07 37.04 17.24 13.89 19.57 24.24 16.67 9.09 K cassette Atpalpha,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16783890_16789446;chr3R_16785103_16789446 chr3R_16783890_16786447,chr3R_16785103_16786447;chr3R_16786564_16789446 chr3R_16786448_16786563 chr3R_16783790_16783889;chr3R_16789447_16789578 2.63 1.59 1.64 0.83 1.39 2.27 0.66 2.04 1.95 4.17 16.46 4.35 2.04 3.80 1.52 1.75 0.98 3.64 1.25 5.88 4.29 1.45 2.70 2.44 2.56 1.75 1.82 6.25 21.05 5.00 5.00 0.00 4.44 1.84 3.17 0.00 5.00 3.03 2.63 4.23 7.14 0.62 1.64 1.47 6.67 5.00 5.26 2.78 1.30 2.00 2.70 5.26 8.00 2.86 1.15 0.00 10.71 5.26 K intron_retention Mbs,I_chr3L_16045251_16046108,I_chr3L_16057100_16057329 chr3L + chr3L_16059930_16063219 chr3L_16059929_16059930;chr3L_16063219_16063220 chr3L_16059713_16059929;chr3L_16063220_16063364 8.57 14.58 8.57 25.45 11.76 8.33 13.98 6.98 11.40 0.00 9.23 12.62 8.96 13.16 11.76 12.68 17.50 2.13 23.08 8.04 8.62 2.86 11.39 6.78 15.79 4.00 6.25 4.82 6.10 11.43 16.67 4.35 5.88 11.36 7.84 9.09 11.34 4.65 7.53 6.59 8.16 7.69 12.50 15.15 0.00 10.00 3.57 6.35 10.99 6.12 8.96 6.25 5.71 0.00 15.69 10.87 0.00 1.52 K jcn_only_AD Cip4,I_chr3L_4363128_4363769,I_chr3L_4363386_4363987 chr3L - chr3L_4324448_4324921 chr3L_4324448_4324861 chr3L_4324284_4324447;chr3L_4324922_4324996 31.07 28.46 27.10 21.21 41.38 24.11 36.14 26.36 32.28 67.65 38.10 23.23 50.62 30.43 33.33 28.19 37.27 64.80 31.07 29.50 32.47 33.33 29.71 32.11 24.41 29.59 43.86 52.38 50.00 45.13 34.65 42.17 34.97 24.29 26.92 32.24 27.01 26.61 18.24 20.24 41.59 31.28 37.86 30.48 46.72 45.22 30.95 51.09 29.28 31.25 30.20 22.67 29.35 30.14 28.97 26.21 30.56 63.46 K jcn_only_AA mod(r),RI_chrX_515831_515923,I_chrX_516392_517480 chrX + chrX_516392_516478 chrX_516392_516466 chrX_516292_516391;chrX_516479_517065 52.38 75.00 52.38 NA NA 70.83 58.62 47.22 47.22 NA 60.87 60.00 69.23 48.15 50.00 54.76 NA 45.45 58.33 52.00 47.83 56.25 58.62 58.33 NA NA 56.52 NA 41.46 43.48 64.71 56.00 42.86 52.38 NA NA 52.63 NA NA 54.29 44.83 55.17 47.62 60.71 50.00 47.89 41.38 61.76 52.83 42.42 52.00 NA 36.00 NA 51.16 45.16 55.32 50.00 K intron_retention RpL13A,I_chr3R_1450243_1451235,EI_chr3R_1450853_1451054,snoRNA:Me28S-U2134b,snoRNA:Me28S-U2134a chr3R + chr3R_1450853_1451235 chr3R_1450852_1450853;chr3R_1451235_1451236 chr3R_1450753_1450852;chr3R_1451236_1451335 0.06 0.06 0.04 0.07 0.03 0.06 0.23 0.05 0.05 0.05 0.06 0.06 0.08 0.07 0.03 0.08 0.03 0.04 0.05 0.05 0.07 0.12 0.11 0.08 0.23 0.12 0.08 0.44 0.09 0.03 0.07 0.03 0.04 0.06 0.05 0.14 0.05 0.08 0.05 0.07 0.14 0.03 0.05 0.06 0.02 0.05 0.06 0.05 0.07 0.07 0.12 0.07 0.10 0.04 0.03 0.07 0.08 0.03 K intron_retention CG7267,I_chrX_8971691_8972369 chrX - chrX_8965835_8965904 chrX_8965834_8965835;chrX_8965904_8965905 chrX_8965184_8965834;chrX_8965905_8966022 0.00 0.00 0.00 0.22 0.00 0.00 0.24 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.20 0.23 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD hook,CG31800 chr2L - chr2L_19031242_19031326 chr2L_19031242_19031292 chr2L_19031164_19031241;chr2L_19031327_19031361 99.44 100.00 100.00 100.00 100.00 100.00 98.58 99.24 100.00 100.00 99.06 99.37 100.00 100.00 100.00 100.00 98.59 98.78 98.15 98.56 100.00 100.00 98.02 98.91 96.15 98.92 99.19 100.00 100.00 100.00 99.05 98.48 99.10 100.00 100.00 100.00 98.00 100.00 98.59 98.57 97.20 99.44 98.75 100.00 99.11 100.00 100.00 98.51 100.00 100.00 99.03 98.39 98.39 100.00 97.32 98.45 100.00 100.00 K intron_retention alpha-Man-I,I_chrX_10218352_10219759,I_chrX_10218390_10219759 chrX - chrX_10218352_10219823 chrX_10218351_10218352;chrX_10219823_10219824 chrX_10218290_10218351;chrX_10219824_10219859 83.33 NA NA 83.33 NA NA 87.50 83.33 64.71 NA NA 80.00 NA NA 87.50 91.67 NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA 90.91 NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA 73.33 NA NA NA NA NA NA NA NA NA K jcn_only_AD C1GalTA,I_chr2L_8945896_8950977 chr2L - chr2L_8945535_8950977 chr2L_8945535_8950769 chr2L_8945358_8945534;chr2L_8950978_8951077 6.25 9.26 13.04 2.38 18.52 6.78 10.78 3.29 8.18 8.00 5.26 1.83 5.15 5.81 5.06 9.26 12.86 4.92 4.49 4.67 15.91 3.17 6.52 8.33 5.71 5.05 6.25 0.00 NA 10.42 7.04 10.00 0.00 3.97 6.25 16.67 9.09 3.45 10.00 5.41 11.48 7.20 6.45 3.33 13.04 5.88 9.76 9.62 8.00 5.36 5.17 0.00 11.63 6.67 3.00 2.33 2.82 4.00 K alternative_acceptor Idh,I_chr3L_8351006_8351949,I_chr3L_8351036_8351655 chr3L - chr3L_8351006_8353892 chr3L_8351036_8353892 chr3L_8353893_8353937;chr3L_8350936_8351005 3.12 5.00 2.63 8.70 0.00 4.76 6.67 4.48 5.38 11.11 0.00 5.88 4.35 4.65 2.56 1.49 0.00 0.00 0.00 4.00 0.00 9.62 3.64 3.16 4.08 7.69 3.70 6.38 3.77 0.00 2.70 2.04 3.95 1.89 3.77 7.55 0.00 0.00 1.96 4.10 2.00 3.85 0.00 0.70 2.22 4.20 0.00 0.00 2.70 1.41 2.17 1.04 3.57 3.92 3.12 3.33 0.88 1.64 K jcn_only_AD CG15134 chr2L + chr2L_16904713_16905298;chr2L_16904611_16905298 chr2L_16904662_16905298 chr2L_16905299_16905389;chr2L_16904460_16904610 9.76 7.69 7.50 13.70 15.62 13.73 3.28 9.09 3.80 34.62 13.33 13.89 2.56 5.56 1.92 4.92 11.63 10.26 1.41 5.05 8.33 15.25 12.31 2.50 15.56 4.76 14.71 8.00 10.81 10.00 4.84 NA 39.53 8.05 12.90 10.00 0.00 8.70 8.11 1.43 NA 5.19 8.11 18.75 NA 10.00 NA 14.71 9.52 NA 11.43 10.34 NA NA 16.98 NA NA 25.00 K jcn_only_AA CG5630 chr3R + chr3R_16752700_16754401 chr3R_16752700_16752909 chr3R_16752493_16752699;chr3R_16754402_16754407 98.98 100.00 100.00 60.27 98.09 96.15 98.03 100.00 99.38 100.00 99.09 98.06 99.26 100.00 99.45 97.40 98.40 98.60 99.34 98.69 97.64 98.99 98.26 99.22 98.13 98.78 99.15 98.54 100.00 97.87 99.42 98.90 100.00 99.45 100.00 98.86 98.98 99.12 99.48 99.20 93.86 98.22 99.22 99.10 99.48 98.15 99.49 98.98 98.91 98.84 96.00 100.00 99.62 97.22 97.83 98.36 99.79 98.56 K intron_retention RI_chr2R_5006333_5006392,CG11784 chr2R + chr2R_5009954_5010023 chr2R_5009953_5009954;chr2R_5010023_5010024 chr2R_5009829_5009953;chr2R_5010024_5010072 0.00 0.00 NA NA NA NA NA 7.69 0.00 NA NA 1.82 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA NA 7.41 NA NA NA NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG42271,RI_chrX_14127297_14127804 chrX - chrX_14122473_14122536 chrX_14122472_14122473;chrX_14122536_14122537 chrX_14121924_14122472;chrX_14122537_14123270 0.00 0.00 3.85 22.58 0.00 5.00 0.00 0.00 2.56 NA NA 0.00 NA 0.00 3.33 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 4.00 0.00 0.00 0.00 K jcn_only_AA Aats-phe chr2R + chr2R_9857108_9857181 chr2R_9857108_9857176 chr2R_9855852_9857107;chr2R_9857182_9857407 100.00 98.95 98.86 100.00 100.00 98.36 100.00 100.00 99.35 100.00 98.46 99.17 97.87 98.15 100.00 97.65 100.00 100.00 98.57 100.00 98.15 100.00 99.03 100.00 97.78 100.00 100.00 100.00 98.18 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 100.00 98.96 100.00 100.00 99.30 100.00 100.00 100.00 98.75 99.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.23 100.00 100.00 K multi_cassette Jupiter,I_chr3R_7417030_7419354,I_chr3R_7418347_7445425,RE_chr3R_7419487_7429863,I_chr3R_7429934_7430307,I_chr3R_7429962_7445425,I_chr3R_7430006_7445425,RI_chr3R_7442748_7445425,RI_chr3R_7442793_7445425 chr3R - chr3R_7418347_7445425 chr3R_7418347_7419043;chr3R_7419077_7419354;chr3R_7419489_7429863;chr3R_7430006_7445425 chr3R_7419044_7419076;chr3R_7419355_7419488;chr3R_7429864_7430005 chr3R_7418247_7418346;chr3R_7445426_7445525 99.03 97.06 100.00 99.03 100.00 100.00 93.22 98.57 100.00 98.63 100.00 100.00 100.00 100.00 98.31 100.00 97.62 100.00 100.00 100.00 100.00 96.60 100.00 97.83 92.31 96.08 97.50 92.77 98.44 100.00 100.00 100.00 98.04 100.00 98.92 98.77 98.63 97.40 98.96 98.24 99.41 99.17 100.00 100.00 99.06 99.03 98.61 99.52 99.07 98.92 98.75 97.83 98.28 98.46 98.39 100.00 98.55 99.46 K jcn_only_AD Pka-R2,I_chr2R_5911755_5913333,I_chr2R_5911755_5913354,I_chr2R_5911803_5913333 chr2R - chr2R_5911708_5913354 chr2R_5911708_5913333 chr2R_5911703_5911707;chr2R_5913355_5913433 35.14 NA 35.00 NA NA NA NA 35.14 35.90 NA NA NA NA NA NA 38.46 36.36 NA 35.00 34.62 NA NA 41.67 30.00 NA NA NA NA NA NA 54.55 NA NA 25.81 NA NA 47.83 NA NA 37.04 NA 34.29 NA 31.03 NA NA NA NA 37.93 NA NA NA NA NA 26.92 NA NA NA K intron_retention mfrn,I_chr3R_23770737_23770817,I_chr3R_23771063_23771153,I_chr3R_23771063_23772599 chr3R - chr3R_23771063_23772915 chr3R_23771062_23771063;chr3R_23772915_23772916 chr3R_23770974_23771062;chr3R_23772916_23773724 7.62 6.45 6.78 10.67 8.89 6.12 7.07 9.52 8.03 9.09 6.15 9.28 6.82 4.65 12.86 8.51 4.35 8.51 10.00 9.92 3.85 30.66 9.40 7.62 10.64 10.64 13.04 12.63 10.37 6.90 5.31 7.69 6.15 8.43 7.27 8.86 10.40 7.32 4.72 8.38 3.06 10.43 0.00 5.10 5.50 6.06 2.78 12.86 7.37 10.23 8.91 3.28 3.28 3.03 10.96 4.41 0.00 5.83 K intron_retention CG4896,REI_chr2L_1179197_1179859,I_chr2L_1191535_1191648 chr2L + chr2L_1177862_1177947 chr2L_1177861_1177862;chr2L_1177947_1177948 chr2L_1177765_1177861;chr2L_1177948_1178044 29.41 NA 20.00 29.41 NA NA 50.00 75.00 21.74 NA NA 16.67 NA NA 55.56 28.57 NA 41.67 54.55 35.00 NA 5.26 50.00 25.00 46.15 35.29 75.00 25.00 25.00 30.77 29.03 16.67 NA 27.27 36.36 56.25 16.67 NA 32.00 20.00 15.38 31.58 NA 35.29 NA 17.39 23.08 19.51 34.62 17.65 31.58 NA NA 20.00 35.29 36.36 NA 29.41 K alternative_acceptor CG32549,I_chrX_18286136_18286367,I_chrX_18286289_18286367,RI_chrX_18301919_18303082 chrX - chrX_18286289_18286367;chrX_18286194_18286367 chrX_18286136_18286367 chrX_18286368_18286467;chrX_18286073_18286135 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.59 0.00 1.10 0.00 0.73 0.00 1.12 0.00 0.45 0.00 0.00 0.47 0.56 0.00 0.00 0.58 0.00 0.78 0.83 3.54 2.50 0.53 0.66 0.00 0.00 0.67 0.72 0.56 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 1.12 1.12 1.03 0.00 0.88 0.79 0.00 0.00 K jcn_only_AA RI_chr3L_19787260_19787323,Ir76a,RI_chr3L_19799338_19799408,Kap-alpha1 chr3L + chr3L_19795029_19795077;chr3L_19795029_19795086 chr3L_19795029_19795090 chr3L_19795020_19795028;chr3L_19795091_19795214 86.36 NA NA NA NA NA NA 77.27 86.36 NA NA NA NA NA NA NA NA NA NA 90.91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 92.31 NA NA NA NA NA NA 84.62 NA NA NA NA NA NA NA NA NA K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2388671_2392054 chrX_2388671_2389073;chrX_2389272_2389644;chrX_2389762_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2392054 chrX_2389074_2389271;chrX_2389645_2389761;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2388641_2388670;chrX_2392055_2392148 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG8067,RI_chr2R_9871650_9871702 chr2R + chr2R_9871646_9871702 chr2R_9871645_9871646;chr2R_9871702_9871703 chr2R_9871550_9871645;chr2R_9871703_9871802 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 6.25 NA NA 0.00 5.56 6.67 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 0.00 K alternative_acceptor CG9526,I_chr2L_6457114_6457365,I_chr2L_6457278_6457337 chr2L + chr2L_6457114_6457365 chr2L_6457114_6457337 chr2L_6457014_6457113;chr2L_6457366_6457437 100.00 100.00 100.00 98.31 100.00 100.00 100.00 100.00 100.00 94.44 100.00 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 97.78 97.14 100.00 100.00 100.00 100.00 97.67 96.88 97.14 96.88 98.18 100.00 100.00 100.00 97.37 100.00 97.37 97.87 97.06 100.00 100.00 100.00 100.00 97.67 100.00 95.65 100.00 96.30 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG17494 chr2L + chr2L_22471985_22472618;chr2L_22471985_22472623 chr2L_22471985_22472552 chr2L_22471978_22471984;chr2L_22472624_22473865 100.00 98.72 100.00 100.00 98.95 100.00 99.60 100.00 100.00 97.67 100.00 99.54 100.00 96.83 100.00 99.61 100.00 99.07 100.00 100.00 100.00 100.00 100.00 98.89 100.00 100.00 100.00 100.00 100.00 100.00 99.12 100.00 98.53 100.00 98.85 100.00 100.00 97.80 100.00 98.48 98.96 99.05 98.04 100.00 100.00 100.00 100.00 98.46 98.53 100.00 98.10 98.04 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG7816,RI_chr3R_25691122_25694436 chr3R - chr3R_25690713_25690778 chr3R_25690719_25690778 chr3R_25690779_25691121;chr3R_25690611_25690712 99.19 99.18 97.48 99.44 99.17 99.18 98.85 98.18 98.82 99.11 100.00 98.67 99.06 100.00 98.83 99.40 100.00 99.43 99.19 98.82 100.00 99.43 99.28 100.00 100.00 99.14 100.00 100.00 98.32 100.00 99.38 100.00 98.80 98.63 100.00 100.00 100.00 100.00 100.00 98.62 100.00 99.24 98.10 96.75 97.47 99.28 98.89 97.06 99.09 98.97 99.24 98.95 97.50 98.21 97.14 100.00 100.00 100.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2387583;chrX_2387710_2388436;chrX_2388671_2389073;chrX_2389272_2389644;chrX_2389762_2395659 chrX_2387584_2387709;chrX_2388437_2388670;chrX_2389074_2389271;chrX_2389645_2389761 chrX_2387149_2387248;chrX_2395660_2395759 1.12 1.92 1.47 0.00 0.00 0.00 0.00 0.75 1.17 3.85 0.00 3.26 0.00 1.72 1.11 1.54 1.54 0.00 1.22 0.99 0.00 0.00 1.12 0.00 2.94 1.69 1.45 0.00 2.70 1.67 1.79 0.00 1.01 0.76 0.00 3.23 1.12 0.00 1.25 1.96 0.00 1.45 1.61 2.74 0.00 0.00 NA 1.54 1.12 0.00 2.04 0.00 2.08 NA 2.02 0.00 0.00 2.04 K intron_retention CG2004,I_chrX_8608130_8608508,RI_chrX_8608147_8608508,I_chrX_8608169_8608438 chrX - chrX_8608169_8608508 chrX_8608168_8608169;chrX_8608508_8608509 chrX_8608069_8608168;chrX_8608509_8608538 4.62 0.00 0.00 2.94 5.26 2.70 11.76 1.56 7.14 3.12 5.71 2.22 3.92 0.00 2.22 4.82 6.25 8.51 3.85 6.98 0.00 8.70 8.20 7.81 4.65 3.57 2.90 6.78 19.05 0.00 1.82 10.34 6.52 4.23 1.82 2.50 5.77 0.00 6.45 3.85 8.70 3.37 0.00 8.16 2.08 8.57 5.77 9.76 6.59 0.00 5.88 0.00 5.41 0.00 4.62 2.13 6.06 8.00 K jcn_only_AA CG3714,I_chr2L_4190825_4191774,I_chr2L_4192969_4193324,I_chr2L_4195905_4196470,I_chr2L_4196780_4197306,RI_chr2L_4196780_4197951,I_chr2L_4196815_4197306,I_chr2L_4196815_4197951 chr2L - chr2L_4196780_4197964 chr2L_4196815_4197964 chr2L_4197965_4198000;chr2L_4196715_4196779 5.05 NA NA NA NA NA 15.38 NA 9.68 NA NA NA NA NA NA 5.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.17 NA NA 0.00 NA NA NA NA NA 9.52 4.55 NA NA NA NA NA NA 4.17 8.70 NA NA NA NA NA NA NA NA 3.85 K alternative_acceptor RI_chrX_502548_513324,CG13366,I_chrX_508729_508806,I_chrX_509497_513324,I_chrX_509727_511407,I_chrX_509727_511477,noncoding_21186,I_chrX_509834_511407,CRE_chrX_509851_511307,I_chrX_510004_511307,I_chrX_510004_511407,I_chrX_513176_513324,I_chrX_513519_513631 chrX - chrX_509834_511407;chrX_510004_511407 chrX_509727_511407 chrX_511408_511507;chrX_509715_509726 14.29 NA NA 0.00 NA NA NA 14.29 0.00 NA NA NA NA NA NA 20.00 NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA K intron_retention klar,I_chr3L_462559_472609,RI_chr3L_517594_539898 chr3L - chr3L_453489_454108 chr3L_453488_453489;chr3L_454108_454109 chr3L_452838_453488;chr3L_454109_454405 1.91 1.76 1.37 5.03 0.79 3.33 4.08 2.28 2.33 1.47 1.50 5.73 5.26 1.61 2.08 2.61 0.87 1.80 4.62 2.25 1.72 3.17 1.13 2.20 0.76 0.83 5.08 5.75 2.11 3.79 1.12 1.52 1.97 2.19 0.76 1.39 1.67 0.49 1.91 0.00 2.38 2.33 1.64 2.48 0.00 2.19 0.65 4.00 3.19 2.42 0.88 1.59 0.69 0.85 2.91 0.00 2.04 0.00 K intron_retention nAcRbeta-21C chr2L + chr2L_545565_545815 chr2L_545564_545565;chr2L_545815_545816 chr2L_545371_545564;chr2L_545816_546443 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 3.49 0.00 0.62 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 8.24 0.00 0.00 1.96 0.00 0.47 0.00 5.08 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.35 1.10 1.92 0.00 0.00 1.83 1.41 1.11 1.12 0.00 0.00 2.38 0.00 1.87 0.00 0.00 0.00 1.32 0.25 0.00 K intron_retention Rpn2,CG11897 chr3R + chr3R_24979331_24979417 chr3R_24979330_24979331;chr3R_24979417_24979418 chr3R_24979325_24979330;chr3R_24979418_24980395 18.18 13.46 22.64 25.86 5.36 30.23 14.29 20.91 14.37 13.79 16.28 29.55 5.26 15.38 16.13 18.80 13.24 18.37 11.58 14.61 8.00 21.43 17.46 15.38 56.67 31.08 35.85 27.03 62.50 19.51 13.25 18.18 30.30 22.22 36.00 53.85 8.00 14.71 18.18 15.00 48.15 16.10 14.81 12.07 8.70 29.03 11.63 28.57 23.21 11.76 17.50 14.00 15.79 26.67 23.68 21.21 20.00 38.10 K jcn_only_AD I_chr3R_19825840_19825904,Miro chr3R - chr3R_19860752_19861009 chr3R_19860752_19860985 chr3R_19860087_19860751;chr3R_19861010_19861048 72.97 76.47 80.00 60.47 71.43 68.00 46.88 71.05 62.07 NA 46.88 77.27 73.91 65.22 81.08 60.98 52.17 80.00 66.67 74.55 86.67 77.14 81.54 69.49 45.95 46.43 75.31 81.82 91.18 72.97 60.00 80.77 60.71 85.71 75.00 74.42 81.48 75.51 75.81 55.17 60.00 72.00 NA 82.05 61.54 73.68 83.33 71.43 80.43 71.21 76.39 67.57 79.17 67.92 70.83 75.44 57.58 50.00 K jcn_only_AD bowl,RI_chr2L_3772695_3773616 chr2L + chr2L_3771785_3772460;chr2L_3771874_3772460 chr2L_3771755_3772460 chr2L_3772461_3772694;chr2L_3771707_3771754 9.09 NA NA NA NA NA 8.33 9.09 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.76 NA NA NA K intron_retention CG5288 chr3L - chr3L_8978332_8978383 chr3L_8978331_8978332;chr3L_8978383_8978384 chr3L_8978153_8978331;chr3L_8978384_8978408 75.00 57.14 83.33 89.47 90.91 NA 93.33 66.67 67.86 NA 88.24 75.00 76.47 NA 90.00 60.00 75.00 87.50 77.78 82.61 70.00 NA 63.16 75.00 82.35 90.91 75.00 NA NA 46.15 75.00 NA NA 84.62 NA NA 77.78 69.23 71.43 50.00 NA 77.78 NA 40.00 NA NA 54.55 NA 80.00 88.89 57.14 61.54 NA NA 76.92 72.73 58.82 NA K jcn_only_AD CG2186 chrX + chrX_10751969_10752320 chrX_10751976_10752320 chrX_10752321_10752412;chrX_10751743_10751968 0.00 1.39 0.00 1.61 0.00 2.38 0.00 0.00 1.44 0.00 0.00 1.18 0.00 0.00 0.00 0.00 2.44 4.26 2.33 0.89 0.00 2.00 0.00 1.30 3.64 0.00 2.13 0.00 0.00 1.72 1.79 NA 2.13 0.00 0.00 2.13 0.85 0.00 0.91 0.00 NA 2.35 2.00 1.33 0.00 2.22 2.44 0.00 0.00 0.00 2.56 0.00 0.00 0.00 2.00 0.00 0.00 NA K intron_retention CG1347 chr3R + chr3R_1503325_1503386 chr3R_1503324_1503325;chr3R_1503386_1503387 chr3R_1502991_1503324;chr3R_1503387_1503486 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.61 0.00 0.00 0.00 2.38 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL30,I_chr2L_19008540_19008948,REI_chr2L_19008544_19008723,I_chr2L_19008544_19008918,snoRNA:Me28S-A2113 chr2L - chr2L_19008540_19008948 chr2L_19008539_19008540;chr2L_19008948_19008949 chr2L_19008444_19008539;chr2L_19008949_19009018 99.41 99.32 99.38 99.55 100.00 99.36 99.48 98.41 99.48 100.00 100.00 99.67 99.28 100.00 100.00 100.00 99.22 99.29 100.00 99.69 99.33 100.00 100.00 98.84 99.16 99.22 98.99 99.10 99.17 98.85 100.00 100.00 99.01 100.00 100.00 99.08 99.45 99.17 100.00 99.17 98.37 99.67 99.17 98.91 99.31 100.00 99.41 99.02 98.97 99.44 98.96 98.81 99.13 99.49 100.00 100.00 99.61 99.55 K intron_retention growl chr3R + chr3R_229176_230190 chr3R_229175_229176;chr3R_230190_230191 chr3R_229126_229175;chr3R_230191_230361 78.34 NA NA NA NA NA NA NA 63.64 NA NA 90.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG6812 chr3L + chr3L_19056810_19057426 chr3L_19056817_19057426 chr3L_19057427_19057695;chr3L_19056268_19056809 100.00 100.00 88.89 100.00 NA NA NA NA 93.33 NA NA 92.86 NA NA 100.00 100.00 NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 90.91 NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA 86.67 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG4433,I_chr3R_15845478_15846094 chr3R - chr3R_15845478_15846094;chr3R_15845478_15846069 chr3R_15845478_15846006 chr3R_15845378_15845477;chr3R_15846095_15846194 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3L_1494947_1496080,pUf68,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1500389_1501350 chr3L_1500388_1500389;chr3L_1501350_1501351 chr3L_1500289_1500388;chr3L_1501351_1501397 92.86 NA NA 100.00 NA NA NA 87.50 95.00 NA 93.33 100.00 78.95 90.00 NA 90.00 NA NA 84.62 95.00 100.00 NA 100.00 NA NA NA 90.00 90.00 NA 100.00 NA NA NA 90.91 87.50 NA 88.89 NA NA 92.86 NA 90.91 NA 100.00 NA 91.67 100.00 88.89 100.00 90.00 100.00 NA NA NA NA 100.00 NA 100.00 K intron_retention CG18177,I_chr3L_9723741_9723833 chr3L + chr3L_9720670_9720886 chr3L_9720669_9720670;chr3L_9720886_9720887 chr3L_9720027_9720669;chr3L_9720887_9721007 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 4.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 3.85 0.00 0.00 4.00 0.00 7.41 0.00 0.00 K alternative_acceptor mask,I_chr3R_20073365_20073461 chr3R + chr3R_20065480_20065550 chr3R_20065480_20065541 chr3R_20065264_20065479;chr3R_20065551_20066766 85.71 80.95 85.71 90.70 94.74 88.89 80.00 84.31 81.03 92.31 94.44 83.87 85.71 72.00 79.41 86.67 96.00 92.86 83.33 80.85 85.00 79.41 90.24 85.19 88.24 70.00 90.48 71.43 73.68 90.24 80.00 88.89 83.87 90.24 84.62 92.86 88.89 94.74 86.84 74.29 72.73 78.18 100.00 95.65 77.78 76.92 87.50 85.19 84.44 NA 97.06 93.33 71.43 87.50 80.65 87.50 NA 93.33 K jcn_only_AD Myo31DF,I_chr2L_10506249_10506683,I_chr2L_10506446_10506542 chr2L - chr2L_10506107_10506683 chr2L_10506107_10506542 chr2L_10505926_10506106;chr2L_10506684_10506780 6.54 9.57 5.45 12.69 5.19 8.13 20.00 10.59 6.64 9.82 12.94 4.20 14.08 2.68 7.75 6.79 7.81 7.63 7.55 3.14 8.96 2.75 3.03 9.09 7.35 6.67 6.19 4.42 7.14 4.35 4.60 5.71 12.84 7.10 4.95 3.85 6.54 8.18 2.65 4.09 5.95 7.73 8.42 2.35 4.76 6.35 6.45 4.61 6.80 8.99 3.95 5.34 3.92 6.58 7.25 1.20 1.22 3.28 K jcn_only_AA htt,I_chr3R_24527763_24528033,I_chr3R_24542203_24543363 chr3R + chr3R_24542203_24544152 chr3R_24542203_24543363 chr3R_24542103_24542202;chr3R_24544153_24544634 1.49 10.34 3.45 0.00 0.00 0.00 5.26 0.00 1.92 NA 9.09 1.49 3.23 0.00 3.33 4.17 0.00 NA 0.00 4.76 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA 7.89 NA 4.00 2.00 NA 0.00 4.88 0.00 0.00 0.00 NA 0.00 4.00 2.78 NA NA NA NA 2.44 NA 0.00 NA NA NA 2.27 NA NA NA K intron_retention dnc,I_chrX_3150245_3150319,I_chrX_3150351_3152643 chrX + chrX_3150245_3152643 chrX_3150244_3150245;chrX_3152643_3152644 chrX_3150235_3150244;chrX_3152644_3152740 25.00 NA 22.73 38.89 NA 30.77 38.89 31.82 NA NA NA 11.54 25.00 NA 19.05 37.04 NA 20.00 25.00 23.81 NA NA NA NA NA NA NA NA NA NA 36.36 NA NA 21.43 NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA 27.50 NA NA NA NA NA 37.50 NA NA NA K intron_retention Sc2 chr3L + chr3L_3904286_3904505 chr3L_3904285_3904286;chr3L_3904505_3904506 chr3L_3904069_3904285;chr3L_3904506_3904621 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.26 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD prominin-like,I_chr3L_3116032_3116690,I_chr3L_3121200_3123087 chr3L - chr3L_3116032_3117082 chr3L_3116032_3116690 chr3L_3115932_3116031;chr3L_3117083_3117256 0.00 0.00 0.18 0.13 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.05 0.00 0.00 0.11 0.10 0.00 0.07 0.00 0.06 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.26 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10260 chrX + chrX_2526566_2526637 chrX_2526565_2526566;chrX_2526637_2526638 chrX_2526377_2526565;chrX_2526638_2526884 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 1.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG8128,I_chrX_15591697_15591816 chrX + chrX_15591697_15591816;chrX_15591697_15592355 chrX_15591697_15592065 chrX_15591597_15591696;chrX_15592356_15592720 11.11 10.00 5.26 16.67 NA 6.25 30.43 10.00 7.41 11.11 28.57 10.34 25.00 11.11 4.76 15.62 12.50 9.52 11.76 12.50 5.56 16.67 10.34 5.56 15.00 20.00 13.33 6.25 9.52 11.11 14.29 13.04 9.68 7.41 14.29 13.64 12.00 11.54 5.13 6.67 16.67 16.22 6.25 9.52 11.11 12.50 7.14 8.70 14.71 13.64 4.88 4.55 6.67 6.67 14.29 11.11 9.38 3.23 K jcn_only_AD CYLD chr2L - chr2L_10299221_10299761 chr2L_10299221_10299746 chr2L_10299044_10299220;chr2L_10299762_10299827 3.57 NA NA 4.00 NA NA 4.26 3.57 0.00 NA NA 4.55 NA 7.69 NA 2.13 NA NA NA 3.57 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20341925_20342041;chr3L_20341636_20342041;chr3L_20341509_20342041;chr3L_20341865_20342041;chr3L_20341486_20342041;chr3L_20341751_20342041;chr3L_20341530_20342041;chr3L_20341629_20342041;chr3L_20341598_20342041;chr3L_20341759_20342041 chr3L_20341522_20342041 chr3L_20342042_20342306;chr3L_20341482_20341485 41.18 39.39 46.67 38.53 43.33 34.88 65.43 20.49 50.70 30.43 41.86 44.00 52.38 36.84 38.57 57.69 41.54 41.18 52.38 47.24 48.21 26.09 36.84 42.86 29.27 47.14 45.16 55.56 38.71 37.04 45.98 40.91 36.59 38.93 NA 41.38 46.94 50.00 41.38 67.80 31.82 38.06 54.39 42.86 35.14 26.67 41.03 40.00 40.56 44.68 38.71 32.50 23.33 NA 42.86 40.00 41.54 29.63 K jcn_only_AA PyK,CG7069,CG18596,I_chr3R_18203637_18203690,I_chr3R_18209085_18209133 chr3R + chr3R_18193391_18194506;chr3R_18193391_18196509;chr3R_18193391_18194501 chr3R_18193391_18196485 chr3R_18193322_18193390 80.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CRMP,I_chr3R_1401648_1403314 chr3R + chr3R_1402136_1403314;chr3R_1401648_1403314 chr3R_1401648_1402757,chr3R_1402136_1402757;chr3R_1402982_1403314 chr3R_1402758_1402981 chr3R_1401548_1401647;chr3R_1403315_1403414 98.15 100.00 90.91 91.30 100.00 100.00 100.00 92.31 100.00 83.33 NA 100.00 100.00 100.00 100.00 100.00 87.50 100.00 87.50 100.00 100.00 94.12 81.82 96.00 100.00 90.00 100.00 83.33 77.78 92.86 94.44 90.00 100.00 100.00 90.91 81.25 96.30 85.71 95.83 100.00 77.78 100.00 100.00 100.00 100.00 94.44 100.00 93.33 100.00 94.12 93.33 100.00 92.86 100.00 100.00 93.75 100.00 92.86 K intron_retention janA,RI_chr3R_25864678_25864966,I_chr3R_25864692_25864783,I_chr3R_25871509_25871807 chr3R - chr3R_25865129_25865194 chr3R_25865128_25865129;chr3R_25865194_25865195 chr3R_25864967_25865128;chr3R_25865195_25865252 15.15 11.84 11.27 22.12 9.23 15.69 24.72 14.89 13.48 11.63 23.08 13.89 11.63 10.00 11.90 15.91 17.31 10.67 13.04 19.51 15.15 28.00 22.97 15.91 19.30 21.92 37.97 35.19 46.81 18.18 13.00 12.77 18.75 12.90 15.38 32.35 14.10 10.61 9.26 14.85 48.48 14.93 10.87 9.52 15.52 24.59 12.50 31.58 13.27 13.51 22.22 20.75 11.25 16.67 17.81 18.29 12.08 10.81 N alternative_donor Syb chr2R - chr2R_6137333_6137873;chr2R_6137333_6138021 chr2R_6137333_6138451 chr2R_6137005_6137332;chr2R_6138452_6138649 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Arp66B chr3L - chr3L_8107297_8107356 chr3L_8107296_8107297;chr3L_8107356_8107357 chr3L_8107213_8107296;chr3L_8107357_8107893 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.16 0.00 0.00 0.45 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG12414,I_chr3L_23220648_23244552,I_chr3L_23242363_23255807 chr3L + chr3L_23220648_23255807 chr3L_23220648_23231936;chr3L_23232118_23255807 chr3L_23231937_23232117 chr3L_23220571_23220647;chr3L_23255808_23255814 57.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 57.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Shawn_Tyler,CG14207,CE_chrX_19503187_19504413 chrX + chrX_19504657_19504728 chrX_19504656_19504657;chrX_19504728_19504729 chrX_19504561_19504656;chrX_19504729_19505140 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 5.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.21 0.00 0.00 0.63 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.61 K jcn_only_AD RI_chrX_6482284_6482336,Pat1,I_chrX_6489999_6490050,APC7 chrX + chrX_6489994_6490050 chrX_6489999_6490050 chrX_6490051_6490150;chrX_6489899_6489993 6.52 NA 15.00 6.98 NA NA 6.38 11.11 10.00 10.00 6.06 7.84 6.45 NA NA 6.52 4.35 0.00 3.70 14.71 NA 2.13 9.09 NA NA 0.00 10.34 0.00 4.55 0.00 15.79 11.63 13.48 4.44 0.00 12.50 NA NA 10.00 5.00 7.69 4.08 7.69 14.81 6.67 11.86 NA 3.54 6.38 3.70 NA NA NA NA 12.00 NA 5.00 5.77 K intron_retention scaf6,EI_chr3L_17037760_17037808 chr3L - chr3L_17032731_17033538 chr3L_17032730_17032731;chr3L_17033538_17033539 chr3L_17032656_17032730;chr3L_17033539_17033701 41.67 NA NA NA NA NA NA NA 47.06 NA NA 57.14 50.00 NA NA 56.25 NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA 12.20 NA NA 42.86 NA 41.67 NA NA NA 41.67 NA NA NA NA NA NA NA NA 33.33 NA 33.33 NA NA NA NA NA NA NA K alternative_acceptor CG34015 chrX - chrX_16341991_16342063 chrX_16341996_16342063 chrX_16342064_16342132;chrX_16341931_16341990 100.00 90.91 100.00 100.00 88.89 NA 94.44 94.44 90.91 NA NA 100.00 87.50 100.00 100.00 94.74 100.00 100.00 88.89 93.33 100.00 NA 87.50 100.00 NA 100.00 91.67 NA NA 100.00 100.00 NA NA 93.75 100.00 NA 100.00 100.00 81.82 100.00 NA 95.00 100.00 NA NA NA 100.00 NA 100.00 90.91 100.00 87.50 NA NA 90.91 100.00 93.75 88.89 K intron_retention Dph5,RI_chr3R_18408634_18408707,CG33107 chr3R - chr3R_18408638_18408707 chr3R_18408637_18408638;chr3R_18408707_18408708 chr3R_18407696_18408637;chr3R_18408708_18408807 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.62 1.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG2747 chr3R - chr3R_3847672_3848339 chr3R_3847672_3848178;chr3R_3848212_3848339 chr3R_3848179_3848211 chr3R_3843930_3847671;chr3R_3848340_3848613 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 1.39 0.00 2.15 0.00 0.00 0.00 0.00 0.00 0.00 2.70 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 6.67 4.35 0.00 N cassette CG2076 chrX + chrX_10985226_10985757 chrX_10985226_10985323;chrX_10985661_10985757 chrX_10985324_10985660 chrX_10985084_10985225;chrX_10985758_10985890 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.95 97.09 100.00 100.00 100.00 100.00 100.00 94.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.73 100.00 100.00 100.00 97.53 100.00 100.00 100.00 100.00 K alternative_acceptor CG10375 chr3R + chr3R_19593593_19593800 chr3R_19593593_19593730 chr3R_19593346_19593592;chr3R_19593801_19594051 90.00 100.00 86.36 93.18 94.44 77.27 96.88 96.15 85.42 90.00 100.00 90.00 100.00 82.61 84.62 90.00 94.74 100.00 100.00 97.30 100.00 88.89 85.19 87.50 100.00 100.00 93.94 93.75 75.00 73.33 71.43 77.78 87.50 88.57 94.44 91.67 86.67 93.33 80.00 74.07 95.00 95.45 95.24 88.89 90.00 83.33 77.27 90.00 91.30 88.00 83.33 93.33 68.75 84.21 88.24 95.24 87.88 75.00 K alternative_donor Trp1 chr2L + chr2L_10009419_10009480 chr2L_10009422_10009480 chr2L_10009481_10009536;chr2L_10009393_10009418 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA Acf1,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27620212_27620703 chr3R_27620212_27620267 chr3R_27620112_27620211;chr3R_27620704_27621934 0.68 3.92 1.45 3.12 2.22 0.00 1.41 1.00 0.00 0.00 0.00 2.07 1.75 0.00 0.00 3.00 2.38 1.59 3.61 0.00 1.69 0.00 1.22 1.52 2.33 1.67 0.00 0.00 1.28 0.00 0.00 3.23 4.23 0.00 1.69 0.00 0.00 0.00 1.98 0.66 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.74 0.68 0.00 0.00 2.70 2.70 0.00 0.00 2.86 0.00 6.12 N intron_retention CG5594,CG2812 chr2R + chr2R_19796036_19797200 chr2R_19796035_19796036;chr2R_19797200_19797201 chr2R_19796027_19796035;chr2R_19797201_19797332 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 67.19 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Paf-AHalpha chrX - chrX_15678630_15678697 chrX_15678629_15678630;chrX_15678697_15678698 chrX_15678163_15678629;chrX_15678698_15679162 5.56 0.00 5.56 6.67 18.75 8.70 2.70 10.00 8.51 NA NA 13.89 0.00 6.25 8.33 12.50 NA 0.00 15.00 4.08 4.35 10.34 0.00 15.00 0.00 11.76 18.18 NA 0.00 0.00 4.35 0.00 7.69 3.57 0.00 8.33 16.67 5.56 8.33 8.11 0.00 7.32 0.00 NA 2.86 0.00 11.76 4.55 10.53 10.00 0.00 NA 0.00 4.55 7.41 0.00 0.00 0.00 K alternative_donor gus,I_chr2R_1009158_1009345,RI_chr2R_1009158_1011540,I_chr2R_1009346_1015730 chr2R - chr2R_1009158_1009277;chr2R_1009158_1009241 chr2R_1009158_1009273 chr2R_1009058_1009157;chr2R_1009278_1009300 16.67 NA NA 21.43 NA NA NA 27.27 0.00 NA NA 25.00 16.67 NA NA 33.33 NA NA NA 14.29 NA NA NA 16.67 NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA 14.29 0.00 NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA 33.33 K alternative_acceptor CG9776 chr3R - chr3R_153740_153858 chr3R_153800_153858 chr3R_153859_154129;chr3R_153532_153739 5.17 5.77 5.00 41.03 3.23 5.26 13.64 4.88 5.41 6.25 7.41 5.06 5.56 10.00 3.77 6.38 9.68 4.08 6.98 8.33 3.23 4.17 2.88 2.90 4.17 4.65 2.90 3.85 2.38 10.71 5.88 3.23 2.56 7.27 7.89 5.56 3.28 0.00 3.39 1.54 4.55 9.33 13.33 1.59 8.33 4.62 2.44 8.11 5.63 1.92 7.14 7.32 5.17 1.27 8.16 4.11 5.48 5.56 K intron_retention ird5,CG10185 chr3R - chr3R_11873877_11873963 chr3R_11873876_11873877;chr3R_11873963_11873964 chr3R_11873080_11873876;chr3R_11873964_11874533 96.55 94.44 95.65 100.00 100.00 84.21 90.91 97.37 97.96 100.00 100.00 96.77 94.74 95.00 96.15 96.55 100.00 100.00 95.24 95.56 91.30 100.00 96.15 95.00 92.86 100.00 100.00 100.00 89.47 100.00 96.55 94.74 92.31 97.62 100.00 100.00 88.24 94.12 100.00 100.00 93.75 97.87 90.00 100.00 95.45 96.67 100.00 92.86 93.33 94.74 96.15 92.31 100.00 92.86 100.00 100.00 94.12 97.22 K intron_retention Pka-C1,I_chr2L_9698234_9698701 chr2L - chr2L_9698234_9699114 chr2L_9698233_9698234;chr2L_9699114_9699115 chr2L_9698134_9698233;chr2L_9699115_9699287 0.00 0.00 0.00 0.00 0.00 0.00 3.16 0.00 0.00 NA NA 1.19 0.00 0.00 0.00 1.61 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 3.92 0.00 14.29 3.85 0.00 0.00 0.00 0.00 1.50 0.00 3.23 NA 0.00 0.00 0.00 0.00 1.74 0.00 0.00 0.00 2.38 0.00 0.00 1.31 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention RabX6 chr3L + chr3L_690565_690617 chr3L_690564_690565;chr3L_690617_690618 chr3L_690496_690564;chr3L_690618_690799 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 88.89 NA 90.91 NA 100.00 100.00 91.67 NA 100.00 91.67 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 NA NA 88.89 100.00 92.86 NA NA 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 NA 94.12 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 NA K intron_retention Zasp52,I_chr2R_11652341_11652627,RI_chr2R_11652953_11660545,RI_chr2R_11654219_11660545,F_chr2R_11660759_11661284,I_chr2R_11690993_11701987 chr2R - chr2R_11652341_11652627 chr2R_11652340_11652341;chr2R_11652627_11652628 chr2R_11652241_11652340;chr2R_11652628_11652727 9.54 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA 25.00 NA NA NA NA 0.00 NA NA NA NA NA NA 10.00 NA NA NA NA 0.00 11.11 NA 9.09 NA NA NA NA NA NA NA NA NA 0.00 K intron_retention CG42574,RI_chr3R_627714_636393,Hus1-like,RI_chr3R_634997_636393,I_chr3R_636510_637704 chr3R - chr3R_634997_636393 chr3R_634996_634997;chr3R_636393_636394 chr3R_634897_634996;chr3R_636394_636493 10.81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor pAbp,I_chr2R_14027838_14028996 chr2R + chr2R_14027838_14028996 chr2R_14027838_14028992 chr2R_14027738_14027837;chr2R_14028997_14029096 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention alph,I_chr3R_25417890_25422962,chr3R_25434193_25434663.0,chr3R_25438076_25442069.0 chr3R + chr3R_25423196_25423885 chr3R_25423195_25423196;chr3R_25423885_25423886 chr3R_25423141_25423195;chr3R_25423886_25424323 3.54 1.69 3.08 3.20 3.45 2.74 5.97 3.54 4.41 5.26 0.00 11.36 8.70 2.67 5.26 6.84 0.00 0.00 4.65 4.22 0.00 16.67 5.41 5.56 0.00 6.49 10.61 30.00 4.29 2.56 3.37 1.89 0.00 3.88 3.57 5.19 5.71 6.25 3.03 6.87 1.41 4.95 3.77 0.00 2.44 3.51 2.82 1.27 5.56 7.69 1.47 5.00 1.33 2.60 3.33 0.00 4.35 1.75 K jcn_only_AA CG1275,I_chr3L_2261108_2261339 chr3L - chr3L_2253987_2257111 chr3L_2255823_2257111 chr3L_2257112_2257471 0.00 0.00 0.58 0.00 0.77 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.62 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.36 0.00 0.00 0.00 0.00 0.00 0.60 1.89 0.33 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 2.74 0.71 0.00 0.00 0.00 0.00 1.18 K intron_retention pix,I_chr3L_8967436_8967756 chr3L - chr3L_8967448_8967756 chr3L_8967447_8967448;chr3L_8967756_8967757 chr3L_8967234_8967447;chr3L_8967757_8967844 0.28 0.39 0.00 0.19 0.00 0.00 0.54 0.31 0.31 0.00 0.00 0.22 0.00 0.30 0.00 0.00 0.00 0.00 0.42 0.29 0.42 0.45 0.52 0.69 0.00 0.70 0.53 0.87 1.67 0.49 0.47 1.18 0.00 0.32 0.00 0.00 0.16 0.22 0.00 0.45 3.06 0.21 0.28 0.28 0.81 0.68 0.38 2.06 0.19 0.72 0.78 0.00 0.27 0.00 0.17 0.00 0.64 0.00 K jcn_only_AA CG5482,I_chr2R_14519136_14519239 chr2R - chr2R_14519136_14519254 chr2R_14519141_14519254 chr2R_14519255_14519262;chr2R_14519036_14519135 2.99 5.26 2.13 3.70 3.70 0.00 5.08 5.68 5.19 NA 6.45 2.78 6.67 2.56 2.04 5.15 6.67 0.00 4.55 4.50 0.00 6.45 4.69 0.00 0.00 0.00 4.00 NA 3.70 2.63 6.45 0.00 NA 1.54 2.70 7.32 9.09 2.70 0.00 1.96 NA 3.53 2.94 0.00 0.00 0.00 2.86 4.55 3.41 3.85 3.70 0.00 11.11 0.00 2.99 0.00 4.35 2.27 K alternative_donor endos,I_chr3L_14024099_14024488,I_chr3L_14024103_14024158,I_chr3L_14024103_14024546,I_chr3L_14024496_14024546 chr3L - chr3L_14024103_14024488;chr3L_14024103_14024546;chr3L_14024103_14024407 chr3L_14024103_14024158 chr3L_14024003_14024102;chr3L_14024547_14024588 1.41 1.25 2.35 1.54 1.52 1.41 2.08 0.78 1.12 2.99 0.00 3.15 1.16 1.32 0.93 1.89 0.00 1.22 1.00 1.27 0.00 5.45 1.12 0.85 1.96 1.16 2.02 3.51 6.45 1.61 1.35 1.23 4.60 0.84 3.03 1.82 2.56 1.64 1.25 2.19 4.55 1.26 1.37 1.45 2.04 2.65 1.35 2.20 1.31 1.02 1.28 1.56 1.67 1.41 1.04 3.66 1.02 2.24 K intron_retention CG32699,I_chrX_9468866_9473514,CG42395 chrX - chrX_9469080_9473514 chrX_9469079_9469080;chrX_9473514_9473515 chrX_9468934_9469079;chrX_9473515_9473614 1.16 0.00 1.50 2.50 1.80 1.61 1.72 3.09 0.78 2.11 0.00 1.83 2.11 2.73 1.72 2.53 1.16 0.00 1.38 1.68 0.00 4.69 0.00 1.02 0.00 0.00 2.13 0.00 2.15 2.01 0.81 0.00 1.83 2.59 1.72 2.06 0.00 0.00 0.62 0.00 0.00 2.14 2.35 2.30 0.00 0.72 0.00 4.55 1.04 0.00 0.00 0.00 0.00 0.00 1.99 0.00 0.00 2.30 K intron_retention CG42550 chr3R - chr3R_3826595_3826647 chr3R_3826594_3826595;chr3R_3826647_3826648 chr3R_3826527_3826594;chr3R_3826648_3826710 39.29 34.62 38.71 38.30 29.41 50.00 40.48 38.71 37.88 37.50 38.10 42.22 30.77 47.83 46.88 46.97 35.00 43.33 48.28 37.50 33.33 NA 42.86 32.14 40.00 36.36 34.29 NA NA 23.53 42.86 39.13 NA 39.29 50.00 55.00 31.25 40.00 29.17 44.12 60.00 31.43 48.15 50.00 47.83 45.95 34.62 38.46 38.71 48.48 50.00 34.62 75.00 31.25 45.45 38.89 57.50 62.50 K intron_retention Mtch,RI_chr3L_184729_185366,I_chr3L_185367_185925 chr3L + chr3L_185075_185134 chr3L_185074_185075;chr3L_185134_185135 chr3L_184935_185074;chr3L_185135_185303 0.00 0.97 0.83 5.04 0.00 0.88 0.00 0.00 1.65 0.00 0.00 0.58 0.00 1.08 2.54 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 1.27 0.00 1.38 0.00 6.19 0.00 0.00 1.19 0.00 0.67 4.60 0.00 1.15 0.00 0.00 0.00 1.82 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG2126,RI_chr3R_27601238_27601280,RI_chr3R_27602105_27602308 chr3R - chr3R_27601225_27601280 chr3R_27601224_27601225;chr3R_27601280_27601281 chr3R_27601138_27601224;chr3R_27601281_27601380 0.00 0.00 0.00 23.68 0.00 0.00 6.25 5.56 0.00 0.00 4.76 0.00 4.00 0.00 0.00 2.70 NA 0.00 0.00 6.45 NA 0.00 0.00 0.00 0.00 13.33 9.68 10.00 4.76 0.00 0.00 0.00 0.00 0.00 NA 5.88 0.00 0.00 0.00 5.41 9.09 0.00 NA 0.00 6.67 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 4.44 3.45 K intron_retention Camta,RI_chr2R_5364752_5364878 chr2R + chr2R_5358853_5358925 chr2R_5358852_5358853;chr2R_5358925_5358926 chr2R_5358781_5358852;chr2R_5358926_5359070 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA K intron_retention HP5 chrX + chrX_11350521_11350687 chrX_11350520_11350521;chrX_11350687_11350688 chrX_11349315_11350520;chrX_11350688_11350915 13.16 17.39 8.70 56.52 15.38 9.52 20.00 12.00 14.29 0.00 25.00 13.16 31.25 NA 6.90 15.38 NA 13.33 22.22 13.16 NA 26.67 9.09 21.43 22.22 36.36 10.53 0.00 15.38 8.33 15.38 NA 3.45 25.00 20.00 27.78 8.82 8.00 16.67 9.43 25.00 7.69 0.00 0.00 16.67 17.65 11.11 13.16 17.24 0.00 8.70 4.55 0.00 5.26 14.29 9.52 NA 0.00 K alternative_acceptor CG8594 chr2R + chr2R_8461459_8461553 chr2R_8461459_8461517 chr2R_8461392_8461458;chr2R_8461554_8461619 99.27 98.33 100.00 99.27 100.00 98.55 99.12 100.00 100.00 100.00 98.61 99.23 98.65 100.00 98.68 100.00 100.00 100.00 97.59 98.08 97.01 100.00 98.90 98.70 97.67 98.78 98.70 95.83 97.83 100.00 98.75 98.04 100.00 100.00 100.00 100.00 98.59 100.00 98.53 100.00 98.31 99.34 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.77 97.96 97.96 98.00 99.03 100.00 100.00 98.65 K jcn_only_AD CG40191,I_chr2RHet_392279_392824 chr2RHet + chr2RHet_391927_392824;chr2RHet_392279_392824 chr2RHet_392686_392824 chr2RHet_392825_392923 77.14 NA NA NA NA 81.82 NA 81.82 62.50 NA NA 77.14 NA 84.62 65.00 83.72 NA 70.00 85.71 80.00 NA NA 61.90 82.61 NA NA 86.67 NA NA NA 75.00 NA NA 76.67 85.71 NA NA NA NA NA 48.00 84.00 NA NA NA 77.78 73.53 NA 85.71 NA 67.74 NA NA 74.07 NA 73.91 68.00 NA K intron_retention nimB1 chr2L + chr2L_13964732_13964796 chr2L_13964731_13964732;chr2L_13964796_13964797 chr2L_13964670_13964731;chr2L_13964797_13964865 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 90.91 92.86 NA 91.67 100.00 96.55 88.89 NA 90.91 NA 100.00 91.67 100.00 NA NA NA 96.67 90.00 100.00 100.00 NA NA NA 87.50 100.00 91.67 90.91 88.89 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 NA NA NA 100.00 100.00 100.00 90.91 K multi_cassette AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9003790_9007675 chrX_9003790_9005114;chrX_9005177_9005419;chrX_9005562_9005630;chrX_9005820_9005886;chrX_9006126_9006195;chrX_9006273_9007675 chrX_9005115_9005176;chrX_9005420_9005561;chrX_9005631_9005819;chrX_9005887_9006125;chrX_9006196_9006272 chrX_9003721_9003789;chrX_9007676_9007775 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.33 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 96.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG31431 chr3R + chr3R_17696730_17697703 chr3R_17696729_17696730;chr3R_17697703_17697704 chr3R_17696406_17696729;chr3R_17697704_17697862 7.14 7.55 6.67 8.47 6.52 5.77 7.87 6.00 5.99 5.26 5.56 8.91 6.86 4.76 8.09 7.36 6.74 5.74 6.25 6.71 3.37 4.65 10.11 8.51 10.71 15.79 10.81 11.48 20.00 7.14 9.00 6.12 7.78 7.10 5.08 9.52 6.98 7.55 5.21 8.40 8.82 7.84 8.86 8.47 3.39 6.32 9.21 6.67 8.23 7.81 7.89 6.12 5.13 4.08 7.97 6.33 5.63 8.62 K intron_retention tef,CG8950 chr2R - chr2R_12942682_12942739 chr2R_12942681_12942682;chr2R_12942739_12942740 chr2R_12942031_12942681;chr2R_12942740_12943803 41.42 60.00 45.45 58.82 NA NA 45.45 37.50 37.50 NA NA 30.77 25.00 NA NA 50.00 NA NA 23.08 40.00 NA NA 63.64 41.67 45.45 47.06 40.00 NA NA NA 36.36 NA NA 45.45 NA 81.82 NA NA NA 53.85 NA 41.18 NA NA NA 37.50 NA NA 42.86 30.77 33.33 NA NA NA 31.58 NA NA NA K intron_retention CG4825,Rcd2 chr3L - chr3L_20522856_20531997 chr3L_20522855_20522856;chr3L_20531997_20531998 chr3L_20521138_20522855;chr3L_20531998_20532174 19.64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor REI_chr3R_7450909_7451196,CG6813,F_chr3R_7451635_7451822,I_chr3R_7463337_7463512,I_chr3R_7468928_7472509 chr3R - chr3R_7451666_7451947 chr3R_7451666_7451724 chr3R_7451420_7451665;chr3R_7451948_7452076 100.00 100.00 100.00 90.00 75.00 NA 100.00 100.00 91.67 NA NA 90.00 100.00 100.00 100.00 100.00 100.00 57.14 100.00 100.00 NA 100.00 100.00 83.33 NA 100.00 87.50 NA NA NA 83.33 NA 85.71 90.91 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA 90.91 87.50 NA NA 100.00 NA 87.50 100.00 100.00 88.89 K intron_retention CG2316,REI_chr4_205422_208622,I_chr4_206537_206603,I_chr4_208796_210623,I_chr4_209150_214298,I_chr4_209369_210623,I_chr4_209875_213969,RI_chr4_209875_214450,I_chr4_210688_213991,RI_chr4_210688_214450 chr4 - chr4_206543_206603 chr4_206542_206543;chr4_206603_206604 chr4_206453_206542;chr4_206604_206703 0.00 0.00 0.00 1.65 0.00 0.00 0.79 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 1.56 0.00 4.55 0.00 0.00 3.45 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1667,RI_chr2R_5731409_5731653,I_chr2R_5732410_5732504 chr2R + chr2R_5732410_5732504 chr2R_5732409_5732410;chr2R_5732504_5732505 chr2R_5732341_5732409;chr2R_5732505_5732561 96.04 90.91 NA 96.43 NA 90.00 100.00 100.00 95.65 NA NA 92.31 NA NA 91.67 100.00 NA NA 100.00 92.86 NA NA 90.91 NA NA 92.86 100.00 NA 90.00 NA 100.00 100.00 100.00 95.00 100.00 100.00 NA NA NA 90.00 96.43 100.00 92.31 90.00 93.33 94.12 NA 92.86 100.00 100.00 83.33 NA 100.00 100.00 100.00 100.00 92.86 92.59 K intron_retention mib2 chr2L + chr2L_19035698_19035760 chr2L_19035697_19035698;chr2L_19035760_19035761 chr2L_19035635_19035697;chr2L_19035761_19035865 25.00 NA NA NA NA NA 36.36 NA 23.08 NA NA 9.68 NA NA NA NA NA NA NA NA NA 36.84 NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG15609,I_chr2R_12898038_12898391,C_chr2R_12899322_12900789,I_chr2R_12902708_12903184 chr2R - chr2R_12898041_12898658 chr2R_12898041_12898391;chr2R_12898482_12898658 chr2R_12898392_12898481 chr2R_12897841_12898040;chr2R_12898659_12899053 90.00 80.85 92.45 100.00 97.44 91.11 67.16 93.44 88.12 95.00 97.14 95.06 90.00 91.43 90.00 92.31 94.87 92.11 88.37 91.75 92.11 85.42 74.36 81.94 87.10 89.47 91.94 94.44 87.50 88.89 89.80 96.97 88.89 87.14 89.74 89.19 93.44 84.78 93.65 91.94 92.00 91.46 87.88 81.36 82.50 85.71 88.00 90.00 80.52 97.06 84.21 90.91 92.00 81.08 95.12 80.56 87.18 93.10 K intron_retention F_chr2R_14309059_14311473,CG12263 chr2R + chr2R_14317527_14317585 chr2R_14317526_14317527;chr2R_14317585_14317586 chr2R_14317078_14317526;chr2R_14317586_14317838 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD flr chr3L + chr3L_13406076_13406416 chr3L_13406174_13406416 chr3L_13406417_13406538;chr3L_13405928_13406075 3.29 1.92 2.90 2.02 2.66 1.68 4.32 2.82 2.62 1.75 2.93 4.46 4.52 1.20 5.13 2.07 3.76 5.13 1.70 3.63 3.77 10.68 2.19 2.26 2.96 3.29 6.10 2.05 36.00 4.21 8.66 5.47 5.98 5.28 2.35 5.36 4.55 1.49 3.47 1.54 2.55 2.70 3.23 3.60 3.89 4.40 1.54 2.26 4.68 4.55 2.60 3.29 5.26 2.99 3.32 2.16 3.68 2.78 K alternative_acceptor eas,REI_chrX_16172581_16175010,REI_chrX_16172581_16177702,RI_chrX_16173003_16173054 chrX + chrX_16172795_16175010 chrX_16172795_16174918 chrX_16172727_16172794;chrX_16175011_16175110 100.00 100.00 100.00 100.00 94.44 92.31 100.00 100.00 97.67 88.89 100.00 100.00 100.00 92.86 95.00 100.00 94.44 100.00 100.00 94.29 100.00 100.00 94.44 93.33 100.00 92.86 100.00 100.00 88.89 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 97.44 94.74 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 N jcn_only_AD I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17181974_17182126,RI_chr3R_17182422_17182532,RI_chr3R_17183087_17183245,RI_chr3R_17183087_17183726,I_chr3R_17183481_17200781,I_chr3R_17183927_17184513,I_chr3R_17183927_17185306,RI_chr3R_17184319_17184513,I_chr3R_17184319_17185084,I_chr3R_17184319_17185284,noncoding_18168,RI_chr3R_17184792_17185306,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,RI_chr3R_17189607_17189988,I_chr3R_17190098_17190207,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,I_chr3R_17197790_17197863,RI_chr3R_17198778_17199052,RI_chr3R_17198803_17199019,RI_chr3R_17198803_17199052 chr3R - chr3R_17181974_17182268;chr3R_17181974_17182039 chr3R_17181974_17200781 chr3R_17181929_17181973 60.44 52.38 90.00 21.62 NA NA 41.38 57.69 58.97 NA NA 66.67 NA 60.00 NA NA NA NA NA 82.93 NA 25.00 NA 73.91 NA NA 65.00 NA NA NA 34.78 64.00 NA 57.14 NA NA NA NA 72.73 80.00 57.14 48.78 NA NA NA 55.56 60.87 95.45 48.72 62.07 69.57 NA NA 65.00 NA NA 26.09 85.29 K intron_retention CG8336 chr3L + chr3L_9624239_9624292 chr3L_9624238_9624239;chr3L_9624292_9624293 chr3L_9623969_9624238;chr3L_9624293_9624895 0.00 0.00 0.00 17.39 14.29 NA 14.29 8.70 0.00 0.00 NA 7.69 NA 13.64 0.00 0.00 NA 0.00 NA 4.26 NA 7.32 12.50 0.00 0.00 0.00 24.32 19.23 8.70 0.00 0.00 6.25 0.00 0.00 4.00 10.71 5.71 0.00 7.55 0.00 0.00 2.33 0.00 0.00 0.00 4.44 0.00 0.00 0.00 12.50 0.00 NA 0.00 10.34 11.11 3.45 0.00 0.00 K alternative_acceptor Nhe2,I_chr2L_21122390_21122912 chr2L + chr2L_21124374_21124442 chr2L_21124374_21124439 chr2L_21124317_21124373;chr2L_21124443_21124521 57.50 58.62 50.00 53.12 64.29 56.00 54.00 55.00 55.41 60.87 80.00 56.00 64.29 55.00 54.05 55.32 63.33 70.97 56.41 62.32 66.67 67.57 50.00 52.94 66.67 61.11 56.10 72.73 63.64 58.06 57.50 62.50 54.17 59.26 57.89 60.53 56.52 55.56 55.32 63.83 57.14 54.41 50.00 62.86 53.33 65.38 70.00 58.82 56.52 66.67 67.57 41.67 56.25 61.11 64.29 57.14 52.38 50.00 K intron_retention CG9894,RI_chr2L_2755946_2756007 chr2L + chr2L_2756171_2756244 chr2L_2756170_2756171;chr2L_2756244_2756245 chr2L_2756008_2756170;chr2L_2756245_2756663 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.43 0.48 0.41 0.33 0.00 0.00 0.84 0.35 0.22 0.00 0.00 0.33 0.00 0.00 1.14 2.15 2.82 24.76 0.00 0.00 0.00 0.54 0.24 1.18 0.00 0.00 0.00 0.00 0.49 0.80 0.67 0.43 0.00 0.76 0.21 0.00 0.37 0.70 0.71 0.76 0.00 0.00 0.00 0.31 0.00 0.00 0.92 K jcn_only_AA CG3774,I_chrX_6114220_6114292 chrX + chrX_6114220_6114347 chrX_6114220_6114292 chrX_6114120_6114219;chrX_6114348_6114392 10.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG17698 chr3L + chr3L_23741817_23741875 chr3L_23741817_23741871 chr3L_23741752_23741816;chr3L_23741876_23741939 94.83 97.96 92.68 94.81 93.10 97.96 94.32 94.85 95.05 NA 97.14 94.12 91.49 95.52 100.00 89.13 87.88 91.89 91.80 94.85 96.00 NA 96.15 91.67 97.22 96.77 97.78 90.48 95.45 92.00 96.72 97.14 NA 92.47 95.65 96.55 96.00 86.36 93.75 98.75 NA 92.31 90.38 94.00 100.00 95.65 90.00 NA 93.00 94.23 96.15 94.12 94.44 95.74 98.28 100.00 93.55 91.89 K intron_retention cher,I_chr3R_12943024_12948119 chr3R - chr3R_12920041_12920097 chr3R_12920040_12920041;chr3R_12920097_12920098 chr3R_12918009_12920040;chr3R_12920098_12920267 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention gammaTub23C,CG3165 chr2L + chr2L_2972920_2972976 chr2L_2972919_2972920;chr2L_2972976_2972977 chr2L_2972909_2972919;chr2L_2972977_2973107 100.00 100.00 100.00 100.00 NA 100.00 95.45 100.00 100.00 NA NA 94.74 100.00 100.00 94.12 97.30 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 NA NA NA 100.00 NA NA 100.00 100.00 NA 100.00 NA NA 90.00 NA 96.15 92.31 87.50 NA 100.00 NA NA 93.55 NA 87.50 100.00 NA NA 100.00 100.00 100.00 100.00 N intron_retention RpL17,I_chrX_6637182_6638207,snoRNA:Psi28S-3436b,snoRNA:Psi28S-3436a,snoRNA:Psi28S-1060,RI_chrX_6637182_6637528,I_chrX_6637182_6637973 chrX - chrX_6636290_6636382 chrX_6636289_6636290;chrX_6636382_6636383 chrX_6636192_6636289;chrX_6636383_6636524 78.12 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 35.71 NA NA NA NA NA 78.12 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG11266,RI_chr2L_7033019_7034764,I_chr2L_7034274_7034764,I_chr2L_7034274_7035406,RI_chr2L_7034911_7035074,I_chr2L_7051093_7051366 chr2L + chr2L_7034274_7035406;chr2L_7033019_7035074;chr2L_7033019_7035406 chr2L_7033019_7034764,chr2L_7034274_7034764;chr2L_7034911_7035074,chr2L_7034911_7035406 chr2L_7034765_7034910 chr2L_7032919_7033018;chr2L_7035407_7035506 10.59 4.44 14.81 6.67 8.00 20.83 17.95 24.39 15.79 6.38 15.00 16.39 26.92 29.41 15.62 26.67 10.53 15.62 23.08 10.39 14.29 9.33 13.64 6.52 6.38 3.03 8.11 0.00 3.90 6.25 40.48 4.17 2.37 22.73 9.30 NA 12.50 11.43 10.64 8.65 3.61 12.05 15.79 13.16 0.98 6.02 8.70 5.38 20.00 10.00 17.50 11.11 2.17 14.29 33.33 10.00 5.71 2.26 K intron_retention CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042891_5042983 chr2L_5042890_5042891;chr2L_5042983_5042984 chr2L_5042835_5042890;chr2L_5042984_5043016 50.00 52.94 55.00 45.45 NA 42.11 58.62 60.87 41.18 NA NA 60.47 NA 66.67 66.67 57.14 35.71 50.00 41.67 60.47 40.00 53.33 50.00 50.00 41.67 60.00 63.64 33.33 42.11 44.44 45.00 43.75 44.00 63.89 45.45 47.06 NA 50.00 63.64 35.00 50.00 70.37 52.94 55.56 52.63 40.00 54.55 55.00 55.81 36.36 50.00 38.46 NA 53.85 50.00 56.25 72.73 48.15 K jcn_only_AA CG4822,I_chr2L_120081_120199,I_chr2L_120266_120420,RI_chr2L_126228_126309 chr2L - chr2L_117760_117819 chr2L_117776_117819 chr2L_117820_117887;chr2L_117691_117759 3.37 2.49 3.07 6.88 4.44 7.03 5.67 4.37 3.93 2.83 2.24 3.89 4.55 1.48 3.39 6.38 3.88 3.11 4.79 5.26 3.25 1.90 3.37 3.38 2.16 7.08 2.29 3.18 2.67 3.43 4.32 1.89 2.86 1.49 3.74 4.44 1.87 1.61 2.35 4.29 8.00 4.23 3.21 3.85 2.73 1.73 2.55 3.64 5.49 4.26 4.05 2.16 0.00 5.35 1.95 2.40 2.56 1.30 K intron_retention noncoding_5362,snoRNA:Me28S-G3255a,CG8777,RI_chr2R_4989921_4989993,Vang chr2R + chr2R_4983464_4983654 chr2R_4983463_4983464;chr2R_4983654_4983655 chr2R_4983429_4983463;chr2R_4983655_4983707 0.00 6.06 0.00 0.00 NA 0.00 5.71 0.00 0.00 0.00 NA 1.72 6.67 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 NA 1.12 0.00 5.13 0.00 3.39 20.00 0.00 0.00 0.00 8.33 0.00 2.22 9.09 25.00 0.00 3.23 4.65 3.70 0.00 5.77 0.00 4.65 15.38 2.13 0.00 NA 0.00 0.00 1.39 0.00 1.89 0.00 0.00 0.00 1.06 2.86 K jcn_only_AD Lnk,RI_chr3R_21714780_21715376 chr3R + chr3R_21714788_21715376;chr3R_21714614_21715376 chr3R_21714419_21715376 chr3R_21715377_21715476;chr3R_21714271_21714418 28.57 26.42 29.17 23.33 23.91 23.08 32.47 21.79 28.46 54.17 12.50 24.18 19.51 28.26 36.36 25.00 20.41 35.29 30.77 40.98 14.71 37.14 38.57 22.97 28.57 27.27 47.14 43.18 47.06 29.41 42.86 34.38 23.53 29.58 21.21 20.45 46.55 45.83 50.98 29.27 14.63 24.18 25.00 42.00 36.00 15.09 51.85 22.22 22.81 27.27 39.24 26.67 47.22 42.86 22.41 45.45 40.62 16.98 K jcn_only_AA Idh,I_chr3L_8351006_8351949,I_chr3L_8351036_8351655 chr3L - chr3L_8351006_8351655 chr3L_8351036_8351655 chr3L_8351656_8351715;chr3L_8350936_8351005 2.86 3.51 0.00 0.00 6.90 0.00 5.26 1.79 3.45 20.00 2.86 3.19 0.00 4.35 2.44 0.00 NA 6.90 0.00 5.26 0.00 7.14 1.69 1.82 3.77 0.00 1.79 5.00 3.33 2.78 NA 0.00 2.00 2.04 0.00 6.12 1.64 0.00 0.00 0.00 8.00 2.60 0.00 2.94 3.12 2.38 3.03 5.88 8.47 6.67 3.51 3.03 7.32 3.77 2.50 4.88 1.45 4.55 K jcn_only_AD CG9821,I_chr3R_4644986_4645248,I_chr3R_4644986_4645577,I_chr3R_4644986_4645648,I_chr3R_4644986_4646263,RI_chr3R_4644986_4646264,RI_chr3R_4645903_4646033 chr3R - chr3R_4644986_4645248;chr3R_4644986_4646033;chr3R_4644986_4645649 chr3R_4644986_4645577 chr3R_4644886_4644985;chr3R_4646034_4646133 0.00 0.00 0.00 0.22 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.35 0.00 0.00 0.42 0.00 0.18 1.12 3.36 0.00 0.00 0.00 0.40 0.00 1.09 0.62 0.00 0.00 0.00 2.26 0.00 0.48 0.00 0.00 0.00 0.60 0.72 0.00 0.00 0.00 0.00 0.00 0.81 1.52 0.00 0.00 0.00 0.35 0.00 0.00 2.00 0.00 0.00 0.00 0.00 K mutually_exclusive eIF5B,I_chr3L_3429084_3443457,I_chr3L_3432366_3445364 chr3L - chr3L_3429084_3443457,chr3L_3443566_3445364 chr3L_3429084_3432203,chr3L_3432366_3445364 chr3L_3443458_3443565 chr3L_3432204_3432365 chr3L_3428984_3429083;chr3L_3445365_3445464 90.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG11006,F_chr3L_12799159_12799339 chr3L + chr3L_12804689_12804777;chr3L_12804689_12804747 chr3L_12804689_12804774 chr3L_12803828_12804688;chr3L_12804778_12804986 2.63 0.00 0.00 0.00 0.00 7.14 8.70 0.00 2.78 0.00 7.14 11.11 0.00 0.00 0.00 4.55 0.00 13.33 10.53 5.13 0.00 3.03 8.00 0.00 0.00 0.00 0.00 0.00 8.33 3.70 15.00 4.55 3.85 0.00 0.00 5.88 8.82 0.00 2.63 5.41 5.56 0.00 0.00 6.45 0.00 8.00 8.70 0.00 0.00 5.41 4.00 0.00 0.00 16.67 12.00 0.00 0.00 2.63 K alternative_donor CG7177 chr3L - chr3L_21547281_21547480;chr3L_21547281_21547665 chr3L_21547281_21547653 chr3L_21547125_21547280;chr3L_21547666_21547994 66.67 NA 44.44 70.59 71.43 80.00 72.73 60.00 73.91 50.00 63.64 78.26 75.00 70.00 71.43 56.25 77.78 66.67 60.00 68.00 40.00 75.00 64.29 60.00 75.00 80.00 50.00 45.45 57.89 44.44 66.67 NA 50.00 83.33 85.71 54.55 57.14 50.00 55.56 56.25 NA 70.00 75.00 66.67 NA 75.00 66.67 73.68 60.00 NA 72.73 NA NA NA 64.29 NA NA 57.14 K intron_retention CG12163,CG33293,I_chr3R_1068862_1077145,RI_chr3R_1069977_1077139 chr3R - chr3R_1065342_1077145 chr3R_1065341_1065342;chr3R_1077145_1077146 chr3R_1065214_1065341;chr3R_1077146_1077239 4.93 4.21 6.55 4.81 6.25 9.95 8.76 4.37 7.37 6.08 4.74 7.65 7.36 7.37 7.34 4.93 6.85 5.75 5.22 4.21 2.69 5.39 4.46 4.35 6.22 4.83 4.65 3.03 4.13 4.20 5.86 0.63 3.42 6.75 9.90 4.29 5.96 6.72 5.11 4.91 1.37 6.64 8.46 3.17 0.61 0.94 0.73 5.22 6.83 1.69 6.08 6.88 1.64 1.73 7.59 1.90 0.52 1.36 K alternative_acceptor eIF4G,I_chr4_948813_950447 chr4 - chr4_950743_951137 chr4_950758_951137 chr4_951138_951213;chr4_950706_950742 66.67 50.00 69.23 75.51 61.54 91.67 38.57 66.67 67.27 NA 64.71 66.67 84.00 54.17 63.64 71.15 50.00 91.67 50.00 62.50 72.73 52.38 66.67 81.25 83.33 75.00 64.71 63.64 NA NA 71.43 NA NA 78.79 75.00 61.11 NA 50.00 NA 65.00 NA 80.56 75.00 80.00 NA NA NA NA 76.32 NA 77.27 66.67 NA NA 62.50 NA NA 62.50 K intron_retention CG8677 chr2L + chr2L_21230038_21230090 chr2L_21230037_21230038;chr2L_21230090_21230091 chr2L_21228459_21230037;chr2L_21230091_21230194 2.86 2.38 5.00 8.00 9.09 5.56 0.00 4.76 3.70 0.00 0.00 1.52 10.53 0.00 9.30 0.00 0.00 2.86 2.50 4.44 8.82 3.36 3.41 2.47 0.00 3.03 6.35 11.86 7.27 7.32 0.00 0.00 3.12 8.00 3.77 1.67 1.90 0.00 0.00 0.00 4.92 3.23 9.38 0.00 0.00 4.65 0.00 1.23 7.46 1.30 3.28 0.00 0.00 3.28 0.00 5.88 0.00 0.00 K jcn_only_AA ced-6,I_chr2R_5322831_5322898,I_chr2R_5324717_5324924,I_chr2R_5328640_5328696 chr2R - chr2R_5322831_5322898 chr2R_5322840_5322898 chr2R_5322899_5322998;chr2R_5322765_5322830 99.35 98.69 98.96 98.45 98.84 98.93 99.34 99.11 99.50 99.18 98.80 99.61 98.84 100.00 99.80 99.40 99.23 99.75 99.80 99.73 100.00 98.79 99.46 99.62 98.35 99.61 99.02 98.07 98.70 99.16 99.03 99.08 99.47 98.04 99.75 99.73 99.58 99.24 99.35 99.59 99.38 99.65 99.73 99.34 100.00 99.78 99.81 98.85 99.52 99.61 99.34 99.62 98.90 99.27 99.03 99.60 99.40 98.82 K intron_retention CG1826,EF_chrX_10666660_10666923 chrX + chrX_10663327_10663380 chrX_10663326_10663327;chrX_10663380_10663381 chrX_10662537_10663326;chrX_10663381_10664019 0.00 0.00 NA 0.00 NA NA 0.00 0.00 5.56 NA NA 6.90 NA NA NA 5.88 NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 4.35 0.00 0.00 0.00 0.00 6.67 NA NA NA NA 0.00 0.00 0.00 K alternative_donor Eph,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_640804_640879;chr4_640734_640879 chr4_640676_640879 chr4_640880_640963;chr4_640576_640675 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 3.85 3.45 2.13 5.88 0.00 0.00 0.00 0.00 0.00 0.00 12.50 0.00 5.88 3.57 7.69 8.33 0.00 5.56 0.00 0.00 7.14 0.00 0.00 0.00 2.27 0.00 0.00 5.88 0.00 5.88 7.14 3.51 0.00 3.70 6.67 9.09 6.25 0.00 0.00 0.00 0.00 K alternative_donor I_chr2L_6323791_6325172,Gef26,I_chr2L_6330719_6330770 chr2L + chr2L_6330564_6330770 chr2L_6330697_6330770 chr2L_6330771_6330832;chr2L_6330244_6330563 16.67 8.33 NA NA NA NA NA NA 12.00 NA NA NA NA NA NA NA NA 44.44 NA 18.18 NA 43.33 NA 16.67 NA NA 7.69 NA NA NA 20.00 NA NA 23.08 NA NA 14.29 9.09 13.04 22.22 NA 18.75 42.86 16.67 5.56 20.00 NA 18.18 8.33 NA NA NA 6.67 NA NA NA 9.52 NA K cassette CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1525393_1527189 chr3L_1525393_1526659;chr3L_1526732_1527189 chr3L_1526660_1526731 chr3L_1525293_1525392;chr3L_1527190_1527240 29.91 NA NA NA NA NA NA NA NA NA NA 93.33 NA NA NA NA NA NA NA 44.44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.38 NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Psa,I_chr3L_1518053_1518213 chr3L + chr3L_1518797_1519946 chr3L_1518796_1518797;chr3L_1519946_1519947 chr3L_1518390_1518796;chr3L_1519947_1520763 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.39 0.00 0.00 0.66 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 1.04 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG3499,I_chr2R_18772777_18772819 chr2R - chr2R_18772767_18772819 chr2R_18772777_18772819 chr2R_18772820_18772879;chr2R_18772677_18772766 0.00 0.00 0.00 1.56 0.00 1.49 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.58 0.00 1.23 0.00 1.47 0.00 0.00 0.79 1.09 0.00 0.00 0.00 1.02 0.00 0.00 0.00 0.00 1.10 0.93 0.00 0.00 0.65 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 K jcn_only_AA CG31715,I_chr2L_10341933_10342151,I_chr2L_10341933_10342155 chr2L + chr2L_10341933_10342149;chr2L_10341933_10342151 chr2L_10341933_10342155 chr2L_10341833_10341932;chr2L_10342156_10342233 0.76 0.00 0.00 1.42 0.00 1.16 1.40 1.27 0.38 0.00 1.19 0.52 1.75 0.79 1.33 0.53 2.14 1.18 0.65 1.05 1.22 0.00 0.00 0.00 0.00 2.31 0.00 0.00 4.65 0.00 0.76 1.06 1.37 1.70 0.00 1.56 0.00 0.00 0.00 1.87 1.67 0.86 0.00 0.00 0.00 1.55 1.10 3.64 1.75 0.00 0.00 1.61 0.00 2.17 0.70 0.00 1.16 0.67 K alternative_donor CG4365 chr3L + chr3L_20791960_20792242;chr3L_20792089_20792242;chr3L_20792100_20792242;chr3L_20792077_20792242 chr3L_20791819_20792242 chr3L_20792243_20793181;chr3L_20791802_20791818 73.33 68.75 73.68 77.42 77.78 71.43 80.00 82.76 77.55 81.82 88.00 82.35 77.78 85.71 69.57 60.87 81.25 73.68 80.95 83.02 80.95 83.33 52.94 68.42 75.00 60.00 33.33 55.56 16.67 58.33 60.00 44.44 68.75 78.57 81.82 62.50 66.67 57.14 64.71 66.67 66.67 75.68 81.82 64.29 43.75 66.67 79.31 73.33 75.68 70.00 63.16 77.78 70.37 50.00 76.19 63.64 77.50 77.27 K jcn_only_AD Gcn2,Gprk2 chr3R + chr3R_27222630_27222707 chr3R_27222636_27222707 chr3R_27222708_27223335;chr3R_27222124_27222629 2.11 2.59 0.00 4.17 4.71 1.20 2.44 0.77 2.17 1.56 0.00 1.41 1.22 1.28 9.68 0.99 4.11 2.53 0.00 2.70 3.12 0.00 2.11 0.98 1.09 3.70 3.16 4.51 4.20 2.44 2.75 0.00 2.63 2.61 3.80 0.81 3.08 3.45 0.90 0.00 0.00 1.05 1.32 1.22 2.56 0.00 4.92 5.26 2.17 2.00 0.67 2.00 2.94 0.00 1.94 2.00 2.56 5.56 K intron_retention Amun,I_chrX_11607839_11608272,I_chrX_11607842_11608105,I_chrX_11607842_11608125,RI_chrX_11607842_11608272 chrX - chrX_11607842_11608590 chrX_11607841_11607842;chrX_11608590_11608591 chrX_11607788_11607841;chrX_11608591_11608810 42.86 45.00 42.86 37.50 38.10 45.00 41.67 50.00 24.07 NA 50.00 50.00 38.46 50.00 43.48 50.00 58.82 61.11 40.91 36.51 47.62 31.91 58.33 36.36 46.15 71.43 57.14 NA 29.27 21.43 39.29 26.92 30.00 41.67 32.00 46.43 42.86 NA 66.67 36.76 41.67 46.34 50.00 16.67 20.00 50.00 54.55 23.89 48.72 33.33 46.67 NA 37.50 NA 23.08 56.25 46.67 24.43 K cassette Rtnl1,I_chr2L_4994995_5006383,RE_chr2L_4994997_5008180,I_chr2L_4999386_5000201,I_chr2L_5027222_5028118 chr2L - chr2L_4994995_5008180;chr2L_4994995_5004613 chr2L_4994995_5004171;chr2L_5004208_5008180,chr2L_5004208_5004613 chr2L_5004172_5004207 chr2L_4994897_4994994;chr2L_5008181_5008280 11.18 13.13 10.92 19.05 18.89 17.70 8.40 8.08 14.08 12.50 7.23 18.40 17.98 13.27 10.29 11.90 15.60 16.96 7.44 22.73 7.81 17.24 7.34 6.90 6.94 8.33 9.52 20.90 19.61 10.23 9.29 13.51 11.54 11.18 15.79 0.93 10.29 11.36 6.96 8.79 5.05 13.24 10.58 14.66 18.99 8.94 16.67 13.13 15.62 11.11 9.23 10.94 20.63 9.30 12.90 9.78 7.07 9.17 K intron_retention CG32016,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_978750_978914 chr4_978749_978750;chr4_978914_978915 chr4_978632_978749;chr4_978915_978920 85.00 NA NA 90.00 NA NA 93.33 78.95 66.67 NA NA 77.78 NA 100.00 NA 85.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 68.75 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 94.12 NA NA NA NA NA NA NA NA NA K alternative_donor RpL15 chr3LHet + chr3LHet_2398018_2398127;chr3LHet_2397859_2398127;chr3LHet_2397925_2398127;chr3LHet_2397992_2398127;chr3LHet_2397841_2398127;chr3LHet_2398002_2398127;chr3LHet_2397820_2398127;chr3LHet_2398053_2398127 chr3LHet_2398060_2398127 chr3LHet_2398128_2398454;chr3LHet_2397802_2397819 11.54 14.29 13.04 8.30 13.33 13.33 22.22 5.82 21.88 16.67 13.64 21.43 22.22 18.52 3.91 27.59 4.94 10.00 8.33 24.19 16.67 3.62 18.52 21.74 22.22 3.12 21.43 6.42 3.36 3.75 13.21 0.87 1.83 5.51 9.52 5.71 16.67 15.38 8.33 0.95 2.94 6.35 12.50 0.44 1.95 3.68 16.67 2.14 10.75 26.09 13.04 11.76 0.99 21.05 4.82 11.54 13.33 1.82 K cassette Pk17E,I_chrX_18685493_18699326 chrX + chrX_18685493_18699326 chrX_18685493_18687791;chrX_18687881_18699326 chrX_18687792_18687880 chrX_18685393_18685492;chrX_18699327_18699426 100.00 92.86 90.91 85.71 100.00 100.00 NA 85.71 100.00 100.00 NA 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.48 NA 83.33 92.86 90.00 NA NA 87.50 NA 71.43 100.00 87.50 100.00 100.00 100.00 87.50 100.00 100.00 100.00 93.75 85.71 NA 100.00 NA 85.71 94.44 92.31 91.67 88.89 92.31 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 92.31 K alternative_donor IP3K2,I_chrX_13216481_13219804 chrX + chrX_13215388_13219804 chrX_13215512_13219804 chrX_13219805_13219869;chrX_13215310_13215387 60.00 NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA NA NA NA 60.00 NA NA 100.00 45.45 NA NA 66.67 NA 50.00 NA NA NA NA NA 44.44 57.14 NA NA NA NA NA NA NA NA 85.71 K intron_retention RabX4 chr3R - chr3R_20653692_20653745 chr3R_20653691_20653692;chr3R_20653745_20653746 chr3R_20653558_20653691;chr3R_20653746_20653766 100.00 NA NA 100.00 NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA 96.00 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA PRL-1,RI_chr2L_16249092_16250080,I_chr2L_16250028_16250080 chr2L - chr2L_16250028_16250080;chr2L_16249722_16250080;chr2L_16249092_16250080 chr2L_16249707_16250080 chr2L_16250081_16250158;chr2L_16248992_16249091 97.91 97.91 99.26 97.59 100.00 98.14 97.61 98.29 97.93 97.27 98.63 97.83 97.25 99.37 98.30 98.17 98.51 98.19 98.65 97.89 99.35 95.27 97.71 98.90 97.31 98.98 97.40 96.61 96.72 93.16 97.09 98.67 95.74 98.01 97.06 98.68 98.40 98.09 98.73 96.00 94.67 97.63 97.21 98.51 99.00 96.40 96.68 97.44 96.75 96.26 96.52 97.33 98.29 98.20 98.34 99.02 98.48 94.85 K alternative_acceptor CG3714,I_chr2L_4190825_4191774,I_chr2L_4192969_4193324,I_chr2L_4195905_4196470,I_chr2L_4196780_4197306,RI_chr2L_4196780_4197951,I_chr2L_4196815_4197306,I_chr2L_4196815_4197951 chr2L - chr2L_4196780_4197964 chr2L_4196815_4197964 chr2L_4197965_4198000;chr2L_4196715_4196779 20.00 NA NA 21.43 NA NA 38.46 25.00 9.09 NA NA 20.00 NA NA NA 19.35 NA NA 14.29 13.33 NA NA 23.08 NA NA NA NA NA NA NA 10.53 NA NA 14.29 NA 85.71 NA NA NA 22.22 6.25 35.71 NA 25.00 NA NA NA 0.00 25.00 NA NA NA NA NA NA NA NA 0.00 K intron_retention CG16971,I_chr3L_225856_225909,I_chr3L_225919_225983,RI_chr3L_225919_226004,I_chr3L_229245_230186 chr3L + chr3L_225919_226219 chr3L_225918_225919;chr3L_226219_226220 chr3L_225910_225918;chr3L_226220_226256 99.56 99.53 99.14 100.00 99.56 99.29 99.77 100.00 99.49 99.32 100.00 99.60 98.50 99.38 100.00 99.73 99.29 98.94 99.70 99.56 100.00 99.50 99.09 99.62 99.61 99.41 99.56 99.45 99.18 99.38 99.72 100.00 99.28 98.92 100.00 100.00 99.60 99.49 99.71 98.95 100.00 99.72 99.61 99.70 99.34 99.56 99.28 99.54 99.58 99.16 100.00 98.67 99.34 98.80 100.00 100.00 98.96 99.65 K intron_retention CG5059,I_chr3L_20509233_20511440,I_chr3L_20509985_20510360 chr3L - chr3L_20509233_20512316 chr3L_20509232_20509233;chr3L_20512316_20512317 chr3L_20509133_20509232;chr3L_20512317_20512503 81.24 94.12 84.00 91.67 76.47 86.96 91.84 91.30 88.37 NA 80.00 84.78 85.71 91.67 82.14 81.08 84.62 95.45 86.21 86.15 91.67 32.14 77.78 78.95 80.00 87.50 94.74 70.00 43.75 60.00 85.71 63.64 75.00 81.40 78.57 76.92 69.23 86.67 87.50 75.86 70.00 78.26 93.75 69.57 90.00 68.75 88.46 76.92 91.67 69.57 80.00 77.78 63.64 66.67 88.46 92.86 80.95 63.64 N intron_retention CG17018,R_chr2L_22312023_22363414,CEI_chr2L_22325847_22356902 chr2L + chr2L_22354723_22354811 chr2L_22354722_22354723;chr2L_22354811_22354812 chr2L_22354466_22354722;chr2L_22354812_22354828 100.00 100.00 100.00 100.00 100.00 100.00 92.97 94.51 94.57 100.00 82.00 100.00 89.66 100.00 100.00 94.55 100.00 100.00 100.00 95.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.30 92.41 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N alternative_acceptor JhI-26,I_chr2R_12177114_12177266 chr2R + chr2R_12178257_12178432;chr2R_12178257_12178308 chr2R_12178257_12178348 chr2R_12177457_12178256;chr2R_12178433_12178520 0.69 0.00 0.00 1.15 1.32 1.52 1.20 0.74 0.51 1.92 0.00 0.70 1.72 1.52 1.12 1.11 0.00 0.00 1.14 0.00 0.00 5.56 0.00 0.83 1.03 0.00 0.70 0.62 0.58 1.15 0.69 0.90 0.00 0.00 1.37 0.88 0.00 0.00 0.64 0.62 0.62 0.71 0.00 0.55 0.00 0.70 0.81 0.00 0.00 0.68 0.76 1.20 0.00 1.06 1.15 0.95 0.53 0.00 K intron_retention CG5196,pps chr3R + chr3R_8236703_8236756 chr3R_8236702_8236703;chr3R_8236756_8236757 chr3R_8236182_8236702;chr3R_8236757_8237365 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG2219,noncoding_20558,RI_chr4_202143_202194 chr4 - chr4_202143_202194 chr4_202142_202143;chr4_202194_202195 chr4_202043_202142;chr4_202195_202294 0.00 0.00 0.00 23.33 0.00 0.00 8.82 0.00 2.30 NA 0.00 3.33 1.85 0.00 0.00 2.41 0.00 0.00 5.26 1.79 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.93 0.00 0.00 2.78 0.00 2.27 0.00 0.00 0.00 5.26 1.59 0.00 0.00 N cassette betaTub97EF chr3R - chr3R_23795273_23798642;chr3R_23794914_23798642 chr3R_23795273_23795381,chr3R_23794914_23795381;chr3R_23795550_23798642 chr3R_23795382_23795549 chr3R_23794649_23794913;chr3R_23798643_23798872 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.50 100.00 99.64 100.00 100.00 100.00 100.00 98.48 100.00 100.00 100.00 99.40 100.00 99.39 100.00 99.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.55 99.59 100.00 100.00 100.00 100.00 K cassette eIF-5A,I_chr2R_19945430_19946454,I_chr2R_19945576_19946006,I_chr2R_19945723_19946006,I_chr2R_19945783_19946006,I_chr2R_19945852_19946006,I_chr2R_19945875_19946006,I_chr2R_19945921_19946006,I_chr2R_19946177_19946252,I_chr2R_19946177_19946255,I_chr2R_19946177_19946454,E_chr2R_19946177_19946508,I_chr2R_19946186_19946252,I_chr2R_19946186_19946255,I_chr2R_19946186_19946454,I_chr2R_19946186_19946508,I_chr2R_19946299_19946454,I_chr2R_19946657_19946733,I_chr2R_19948517_19948682 chr2R + chr2R_19945430_19946454 chr2R_19945430_19946006;chr2R_19946215_19946454 chr2R_19946007_19946214 chr2R_19945330_19945429;chr2R_19946455_19946554 99.97 99.95 100.00 99.85 100.00 100.00 99.97 99.98 99.98 100.00 100.00 99.98 100.00 99.96 99.97 99.94 99.94 99.92 100.00 100.00 100.00 99.92 100.00 100.00 100.00 99.96 99.96 99.93 99.96 100.00 100.00 99.95 99.96 99.95 100.00 100.00 100.00 99.93 99.96 99.97 100.00 99.96 100.00 100.00 99.97 99.97 100.00 99.97 99.98 99.94 99.95 99.94 100.00 99.95 100.00 99.96 99.96 100.00 K alternative_donor yps,I_chr3L_12115255_12115627,RI_chr3L_12115255_12115645,I_chr3L_12115255_12115669,I_chr3L_12115877_12115936 chr3L - chr3L_12115255_12115775 chr3L_12115255_12115645 chr3L_12115155_12115254;chr3L_12115776_12115867 6.09 4.89 5.56 2.94 5.04 3.68 7.02 7.17 6.10 6.45 10.00 3.67 6.67 8.89 3.66 6.56 5.13 6.29 5.04 3.76 4.22 18.09 5.60 4.59 7.48 5.73 7.10 14.29 22.67 4.61 5.00 6.53 5.81 6.09 4.72 5.36 6.17 7.36 8.21 7.42 7.73 5.74 6.72 8.37 4.10 8.26 6.74 11.71 5.46 4.65 7.43 7.91 4.44 3.24 4.12 4.69 4.59 6.56 K jcn_only_AA CG16838,I_chr3L_16125390_16125510 chr3L + chr3L_16125390_16125588;chr3L_16125390_16125639 chr3L_16125390_16125485 chr3L_16125290_16125389;chr3L_16125640_16126338 14.32 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 13.64 NA NA NA NA NA NA NA NA NA NA NA NA 15.00 NA NA NA NA NA NA 6.45 NA 21.74 NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA 19.05 K alternative_donor CG2316,I_chr4_208796_210623,I_chr4_209150_214298,I_chr4_209369_210623,I_chr4_209875_213969,RI_chr4_209875_214450,I_chr4_210688_213991,RI_chr4_210688_214450 chr4 - chr4_205241_205298 chr4_205241_205295 chr4_205175_205240;chr4_205299_205344 94.74 86.84 97.06 96.08 95.65 95.24 94.12 94.25 96.23 100.00 93.10 93.85 96.97 92.86 92.11 95.45 97.44 96.43 92.98 89.39 96.00 92.31 95.65 100.00 93.75 96.00 94.44 100.00 100.00 95.24 93.75 95.65 93.33 88.41 92.31 92.86 100.00 94.44 94.74 92.31 88.24 94.52 97.14 95.83 100.00 100.00 95.65 91.67 92.63 96.97 93.02 87.50 87.50 100.00 97.50 92.86 94.12 96.55 K cassette baz,I_chrX_17055225_17069379 chrX + chrX_17087069_17087931 chrX_17087069_17087345;chrX_17087451_17087931 chrX_17087346_17087450 chrX_17086564_17087068;chrX_17087932_17089266 16.34 5.56 14.29 26.67 12.50 12.50 NA 16.67 11.76 15.00 13.33 9.09 NA NA 13.33 30.77 14.29 NA 14.29 13.16 25.00 27.27 12.90 20.00 30.00 NA 14.29 26.32 NA 40.00 7.69 27.27 25.00 23.53 20.00 25.00 14.29 16.00 12.20 25.00 NA 20.83 27.27 13.04 20.00 NA 14.29 NA 13.64 10.00 20.00 23.08 NA 33.33 20.00 NA NA NA K jcn_only_AA CG13747 chr2R + chr2R_4906154_4906220 chr2R_4906154_4906206 chr2R_4906003_4906153;chr2R_4906221_4906517 97.62 NA NA 100.00 NA NA NA 100.00 97.06 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.48 NA 100.00 NA 97.62 NA NA NA NA NA NA 96.00 NA NA NA NA 100.00 96.43 NA N intron_retention Tsp42Ed chr2R - chr2R_2898360_2898498 chr2R_2898359_2898360;chr2R_2898498_2898499 chr2R_2898168_2898359;chr2R_2898499_2898555 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 84.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Mct1 chrX + chrX_2089096_2092664;chrX_2089073_2092664 chrX_2088826_2092664 chrX_2092665_2092972;chrX_2088634_2088825 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA 4.35 NA K cassette PH4alphaEFB,I_chr3R_26305150_26309614 chr3R + chr3R_26305150_26309614 chr3R_26305150_26305314;chr3R_26305503_26309614 chr3R_26305315_26305502 chr3R_26305050_26305149;chr3R_26309615_26309714 100.00 100.00 100.00 97.00 100.00 100.00 100.00 99.72 99.64 99.50 99.52 99.80 100.00 99.48 100.00 100.00 100.00 100.00 100.00 99.82 100.00 99.25 99.46 99.75 99.47 99.50 100.00 100.00 100.00 100.00 99.60 99.64 100.00 100.00 99.50 100.00 99.79 100.00 99.78 99.58 100.00 100.00 100.00 99.73 100.00 99.75 99.60 99.50 99.76 99.68 99.73 100.00 100.00 100.00 100.00 99.67 100.00 99.79 K intron_retention crol,I_chr2L_11799403_11802904 chr2L - chr2L_11806158_11809125 chr2L_11806157_11806158;chr2L_11809125_11809126 chr2L_11806048_11806157;chr2L_11809126_11809399 0.00 0.00 0.00 2.13 0.00 0.00 6.82 1.23 3.03 0.00 0.00 5.56 2.94 0.00 6.00 0.00 0.00 2.70 0.00 2.13 0.00 10.00 1.54 0.00 0.00 0.00 8.51 18.18 13.89 0.00 1.92 0.00 1.89 0.00 0.00 0.00 1.39 0.00 5.56 0.00 0.00 0.98 0.00 3.45 0.00 3.45 0.00 1.75 2.44 0.00 0.00 2.38 0.00 0.00 1.92 0.00 0.00 0.00 K intron_retention Atg18,I_chr3L_8182683_8182941 chr3L + chr3L_8181681_8182401 chr3L_8181680_8181681;chr3L_8182401_8182402 chr3L_8180913_8181680;chr3L_8182402_8182545 11.63 8.00 11.48 22.45 5.13 5.17 6.98 14.86 16.16 6.67 4.76 5.66 17.95 11.63 15.15 19.30 13.16 9.52 8.00 10.74 12.82 20.88 11.76 12.00 18.75 19.35 12.70 24.32 16.67 12.07 20.00 13.21 8.70 17.28 5.00 30.00 8.82 8.82 7.53 15.84 21.62 11.21 11.63 17.14 9.68 7.27 4.41 20.00 9.68 8.06 8.82 13.64 7.27 9.80 17.86 9.80 3.37 12.33 K intron_retention CG4365 chr3L + chr3L_20791819_20792242 chr3L_20791818_20791819;chr3L_20792242_20792243 chr3L_20791802_20791818;chr3L_20792243_20793181 14.72 NA 6.67 25.00 NA NA 20.00 7.69 15.56 NA 0.00 15.15 NA 14.29 20.00 36.36 7.14 12.50 19.05 10.20 5.56 23.08 NA NA NA 25.00 NA 28.57 NA NA 25.00 NA NA 15.38 NA NA NA NA NA 14.29 NA 17.65 10.00 NA NA 20.00 0.00 NA 12.50 6.67 NA NA 17.39 NA 11.11 17.65 6.06 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2389272_2395659 chrX_2389272_2392054;chrX_2392149_2392515;chrX_2392665_2393243;chrX_2393712_2395659 chrX_2392055_2392148;chrX_2392516_2392664;chrX_2393244_2393711 chrX_2389172_2389271;chrX_2395660_2395759 41.66 NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CHKov1,CHKov2 chr3R - chr3R_21154725_21154782 chr3R_21154724_21154725;chr3R_21154782_21154783 chr3R_21154645_21154724;chr3R_21154783_21155024 7.81 6.35 4.11 10.81 7.81 8.33 13.01 4.58 4.76 9.23 7.27 5.59 5.83 6.02 10.00 9.77 9.52 15.19 6.74 6.43 6.45 9.57 6.72 5.43 8.43 10.00 10.20 12.59 42.86 11.25 13.33 3.33 9.03 5.88 7.78 26.25 6.00 4.00 9.20 6.25 12.77 6.41 7.46 8.14 3.57 7.32 10.26 10.38 5.63 8.47 8.82 8.33 11.43 8.33 7.41 7.41 6.90 7.41 K jcn_only_AD RI_chrX_7172561_7252693,CG1677,I_chrX_7178792_7252693,unc-119,I_chrX_7183298_7183371,RI_chrX_7183298_7184274 chrX - chrX_7183298_7183538 chrX_7183298_7183371 chrX_7183198_7183297;chrX_7183539_7183711 11.43 NA 13.04 6.45 NA 19.23 13.79 3.03 6.98 NA NA 11.11 19.05 NA NA 16.13 NA NA 3.70 8.70 NA 12.50 5.88 12.50 NA 3.57 13.33 NA NA NA 13.64 NA NA 11.76 27.27 8.70 10.00 4.35 8.33 20.51 NA 20.00 25.00 NA 15.00 17.50 13.89 NA 9.09 10.00 3.85 NA NA 8.00 8.70 8.33 14.29 NA K multi_cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,RI_chr3R_27801288_27801517,I_chr3R_27801288_27801596 chr3R - chr3R_27784850_27805244 chr3R_27784850_27801169;chr3R_27801288_27801517;chr3R_27801688_27805244 chr3R_27801170_27801287;chr3R_27801518_27801687 chr3R_27784757_27784849;chr3R_27805245_27805341 66.67 75.00 75.00 90.91 NA NA 37.50 53.85 63.64 NA 75.00 84.62 75.00 66.67 60.00 63.64 NA 57.14 62.50 66.67 50.00 NA NA NA NA 57.14 33.33 NA NA NA 75.00 NA NA 77.78 NA NA NA NA NA 60.00 NA 58.33 75.00 NA NA 100.00 NA 66.67 63.64 NA 80.00 75.00 NA NA 62.50 NA NA 71.43 K intron_retention CG31710 chr2L - chr2L_9703179_9703267 chr2L_9703178_9703179;chr2L_9703267_9703268 chr2L_9702964_9703178;chr2L_9703268_9703605 8.01 NA 0.00 4.35 NA 25.00 17.39 16.00 0.00 NA NA 0.00 NA 14.29 12.50 12.50 6.67 NA 0.00 21.43 NA NA NA 11.76 NA NA NA NA 20.00 NA NA NA 6.67 9.09 NA NA NA NA NA 0.00 NA 12.00 7.69 NA 0.00 7.69 0.00 15.79 15.38 5.26 NA NA 0.00 NA NA 0.00 10.00 8.33 K intron_retention Rae1 chr2R - chr2R_17546981_17547029 chr2R_17546980_17546981;chr2R_17547029_17547030 chr2R_17546206_17546980;chr2R_17547030_17547542 0.00 0.00 0.00 3.19 1.09 0.00 2.06 2.35 0.59 0.00 0.00 1.52 0.00 0.00 3.49 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 3.92 3.37 0.00 0.00 0.00 0.00 0.00 3.19 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG31431 chr3R + chr3R_17698248_17698309 chr3R_17698247_17698248;chr3R_17698309_17698310 chr3R_17698132_17698247;chr3R_17698310_17698377 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 4.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 1.06 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 K intron_retention Myb,RI_chrX_15752571_15753225 chrX - chrX_15749759_15749822 chrX_15749758_15749759;chrX_15749822_15749823 chrX_15748872_15749758;chrX_15749823_15751578 0.00 0.00 0.99 1.27 0.00 0.00 0.00 0.00 1.41 0.00 0.00 1.85 2.35 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.02 2.27 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.95 1.25 0.00 1.12 1.12 3.61 1.12 2.03 0.00 0.00 0.00 0.00 1.96 0.00 0.00 1.37 0.00 K alternative_donor CG1354,I_chrX_9672972_9673084,I_chrX_9673026_9673084 chrX + chrX_9673026_9673084;chrX_9672947_9673084;chrX_9672972_9673084 chrX_9672967_9673084 chrX_9673085_9673184;chrX_9672926_9672946 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 2.38 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 1.56 5.88 0.00 0.00 2.70 0.00 0.00 0.00 K jcn_only_AA hppy,I_chr2R_15066378_15066915,I_chr2R_15105700_15106080,I_chr2R_15106144_15108248 chr2R + chr2R_15066378_15066881;chr2R_15066378_15066915 chr2R_15066378_15067003 chr2R_15066360_15066377;chr2R_15067004_15067015 72.73 57.69 NA NA NA NA 58.33 45.45 69.05 NA NA 74.07 NA NA NA 81.82 NA NA 86.96 85.00 NA 78.95 72.97 56.52 68.18 NA 45.16 90.91 96.43 65.38 NA NA NA 53.57 NA 72.73 72.73 82.61 NA 79.25 NA 73.91 NA 84.21 NA NA 72.73 97.14 85.00 NA 65.91 61.54 NA NA 69.57 NA NA NA K intron_retention hts,I_chr2R_15311185_15312327,I_chr2R_15311303_15311544,I_chr2R_15311303_15312026 chr2R - chr2R_15306111_15311098 chr2R_15306110_15306111;chr2R_15311098_15311099 chr2R_15306062_15306110;chr2R_15311099_15311184 3.33 3.85 8.33 14.71 0.00 0.00 10.26 6.52 2.90 NA 0.00 3.49 2.94 2.78 5.00 7.69 0.00 7.41 5.41 2.90 10.53 3.23 NA 0.00 NA 9.68 NA NA NA 3.85 6.90 NA 0.00 3.33 NA NA 4.76 NA NA 0.00 NA 3.57 4.00 9.09 NA NA NA 0.00 3.12 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K jcn_only_AD Nrg,I_chrX_8411470_8425729,RI_chrX_8411636_8425729,RI_chrX_8412432_8425557 chrX + chrX_8411668_8425729;chrX_8411454_8425729 chrX_8411543_8425729 chrX_8425730_8425829;chrX_8411428_8411453 0.00 NA NA 4.76 NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 K cassette Lasp,RI_chr3L_16674471_16704042 chr3L - chr3L_16674471_16704042 chr3L_16674471_16687301;chr3L_16687397_16704042 chr3L_16687302_16687396 chr3L_16674371_16674470;chr3L_16704043_16704142 99.30 100.00 99.08 99.35 100.00 100.00 95.91 98.82 100.00 100.00 98.96 99.42 98.90 98.86 100.00 99.31 98.80 99.01 100.00 99.57 100.00 99.35 98.83 99.31 95.79 99.05 99.30 98.55 96.23 100.00 98.95 94.44 100.00 99.39 98.81 96.77 99.29 100.00 99.24 99.38 93.10 99.51 100.00 99.21 98.36 98.84 100.00 99.22 100.00 98.78 99.43 100.00 100.00 98.15 99.13 100.00 98.77 100.00 K cassette CG4630,RI_chr2R_9103472_9103634,I_chr2R_9103765_9103852,I_chr2R_9103910_9104108,I_chr2R_9103956_9104108,RI_chr2R_9104206_9104265 chr2R - chr2R_9103765_9104108 chr2R_9103765_9103852;chr2R_9103956_9104108 chr2R_9103853_9103955 chr2R_9103665_9103764;chr2R_9104109_9104202 34.21 23.08 29.41 50.00 NA 33.33 29.03 41.18 31.03 33.33 30.00 34.78 NA 25.00 40.00 33.33 NA NA 18.18 32.14 27.27 55.26 24.56 34.21 33.33 40.00 34.78 25.93 71.88 32.00 51.61 50.00 53.85 40.00 33.33 31.03 29.82 34.88 36.17 43.90 71.43 25.00 NA 46.03 40.00 35.90 27.50 59.09 43.75 31.25 41.67 28.57 NA 41.38 46.67 32.26 22.22 54.55 K intron_retention mub,RI_chr3L_21901021_21901163,I_chr3L_21908756_21909179 chr3L + chr3L_21914088_21914156 chr3L_21914087_21914088;chr3L_21914156_21914157 chr3L_21914067_21914087;chr3L_21914157_21914427 90.89 87.50 81.82 100.00 95.45 95.45 100.00 86.96 93.33 93.75 92.86 87.80 93.33 93.33 91.30 94.12 92.86 84.21 NA 86.27 100.00 95.00 88.89 94.29 92.86 95.83 86.21 92.31 94.44 84.00 100.00 75.00 77.78 96.15 95.00 90.00 83.64 80.56 94.29 90.00 86.67 93.48 100.00 80.00 78.95 90.48 86.36 70.83 89.47 92.00 87.10 86.96 81.82 95.00 91.67 90.48 81.82 71.43 K intron_retention crol,I_chr2L_11799403_11802904 chr2L - chr2L_11803899_11806047 chr2L_11803898_11803899;chr2L_11806047_11806048 chr2L_11803785_11803898;chr2L_11806048_11806157 0.00 0.00 0.00 0.84 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2393243 chrX_2387249_2387583;chrX_2387710_2388436;chrX_2388671_2389073;chrX_2389272_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2393243 chrX_2387584_2387709;chrX_2388437_2388670;chrX_2389074_2389271;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2393244_2393291 16.67 20.00 NA NA NA NA NA 20.00 16.67 NA NA 5.26 NA NA 20.00 NA NA NA 20.00 20.00 NA NA NA NA NA NA NA NA NA NA NA NA 12.50 20.00 NA 0.00 11.11 NA NA 6.67 NA 20.00 NA 16.67 NA NA NA 16.67 16.67 NA NA NA NA NA 25.00 NA NA NA K alternative_donor Tak1,I_chrX_20388150_20389255 chrX - chrX_20388150_20392250;chrX_20388150_20388725 chrX_20388150_20389255 chrX_20388050_20388149;chrX_20392251_20392299 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19562509_19562629 chr2R_19562508_19562509;chr2R_19562629_19562630 chr2R_19562454_19562508;chr2R_19562630_19562728 11.94 11.36 12.98 7.29 9.33 12.04 39.38 18.10 8.72 11.94 19.39 19.02 16.84 13.68 10.37 10.24 10.78 16.15 13.14 11.28 14.71 15.06 10.12 10.00 15.18 13.67 17.37 9.68 25.49 6.11 19.50 7.79 6.11 11.39 11.76 27.27 10.97 7.76 13.47 9.52 15.00 12.16 10.59 8.11 8.76 16.30 13.16 15.64 10.24 12.86 15.48 12.62 6.82 15.58 10.06 9.26 6.50 8.02 K multi_cassette scrib,I_chr3R_22381374_22399575,I_chr3R_22394393_22399130,I_chr3R_22394407_22399145,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22381374_22399575 chr3R_22381374_22392082;chr3R_22392298_22392645;chr3R_22392949_22393009;chr3R_22393090_22393198;chr3R_22393468_22399575 chr3R_22392083_22392297;chr3R_22392646_22392948;chr3R_22393010_22393089;chr3R_22393199_22393467 chr3R_22381305_22381373;chr3R_22399576_22399605 100.00 100.00 100.00 100.00 97.14 100.00 100.00 98.28 100.00 100.00 100.00 98.68 96.88 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.51 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette Zyx102EF,I_chr4_1078380_1078835,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1078380_1078835 chr4_1078380_1078432;chr4_1078778_1078835 chr4_1078433_1078777 chr4_1078280_1078379;chr4_1078836_1078848 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.31 100.00 100.00 95.00 98.11 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 94.12 96.15 95.45 100.00 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 K jcn_only_AA Mcm3 chrX + chrX_5219686_5219762 chrX_5219686_5219759 chrX_5219452_5219685;chrX_5219763_5220771 100.00 98.65 98.36 100.00 100.00 100.00 98.25 100.00 98.63 97.67 100.00 100.00 100.00 100.00 98.59 97.37 100.00 100.00 100.00 99.37 100.00 100.00 100.00 100.00 100.00 100.00 98.88 100.00 100.00 100.00 97.73 100.00 97.87 100.00 98.00 97.83 99.30 100.00 99.15 100.00 100.00 99.26 100.00 100.00 100.00 100.00 98.78 97.78 100.00 100.00 100.00 100.00 97.30 100.00 95.77 100.00 100.00 100.00 K jcn_only_AA gw,I_chr4_675416_675686,I_chr4_675425_677852,I_chr4_679135_681671 chr4 - chr4_675416_675686 chr4_675425_675686 chr4_675687_675786;chr4_675325_675415 100.00 100.00 100.00 99.63 100.00 99.05 100.00 100.00 100.00 100.00 100.00 100.00 99.25 99.37 100.00 100.00 100.00 100.00 100.00 99.63 100.00 100.00 100.00 98.39 100.00 100.00 100.00 100.00 100.00 100.00 99.28 100.00 100.00 100.00 100.00 100.00 99.13 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.67 100.00 99.49 100.00 100.00 100.00 K alternative_last_exon stai,I_chr2L_6110225_6121773 chr2L + chr2L_6122411_6122977 chr2L_6122411_6122697 chr2L_6122978_6124729 chr2L_6122698_6122853 chr2L_6122264_6122410 95.35 95.71 95.18 96.79 98.36 95.83 80.00 93.47 96.74 89.13 94.55 95.73 96.00 97.73 97.30 97.01 96.51 90.28 94.92 94.78 96.55 98.78 95.35 91.89 91.49 92.66 95.51 89.47 93.42 96.55 95.37 84.75 95.56 95.09 96.67 69.23 94.59 94.74 90.20 95.37 89.87 95.60 93.42 95.35 84.38 96.33 97.35 86.89 95.95 96.20 95.89 94.29 97.56 96.00 95.24 95.00 93.18 86.67 K alternative_acceptor CG31324,I_chr3R_21933065_21933306,F_chr3R_21933069_21950156 chr3R + chr3R_21933065_21950156 chr3R_21933065_21933306 chr3R_21932969_21933064;chr3R_21950157_21950256 2.22 3.23 2.27 2.70 2.17 2.38 2.70 3.03 2.38 1.23 2.86 2.47 3.23 2.78 2.00 3.57 1.89 0.00 1.82 1.19 2.00 1.40 3.23 3.57 2.56 2.70 3.57 4.26 1.35 1.19 2.94 2.33 1.05 3.39 2.22 1.89 1.43 14.29 1.16 1.32 2.38 1.23 3.03 2.13 0.00 1.27 2.44 1.16 1.67 1.82 2.22 2.33 0.00 0.00 2.22 6.67 2.56 0.98 K intron_retention RpS13,RI_chr2L_8364126_8364208,I_chr2L_8364128_8364191 chr2L - chr2L_8364126_8364208 chr2L_8364125_8364126;chr2L_8364208_8364209 chr2L_8364028_8364125;chr2L_8364209_8364291 99.88 99.90 99.54 99.58 100.00 99.85 99.92 99.93 99.82 100.00 99.83 99.77 99.89 99.90 97.42 99.96 100.00 99.93 99.72 99.91 99.87 100.00 99.90 100.00 99.60 99.84 99.64 99.72 100.00 100.00 99.84 99.90 99.20 99.68 99.78 99.86 100.00 99.88 99.93 99.75 100.00 99.94 99.87 100.00 99.80 99.42 99.92 99.87 99.88 99.91 99.89 99.83 99.94 99.92 99.88 99.94 99.82 99.70 K alternative_acceptor CG7546 chr3L + chr3L_7508878_7508925;chr3L_7508878_7508967 chr3L_7508878_7508970 chr3L_7508741_7508877;chr3L_7508971_7509150 37.04 43.33 38.89 48.84 46.15 44.44 42.50 42.50 33.75 30.00 36.00 32.73 34.62 26.92 33.33 44.83 25.93 39.29 10.53 31.31 41.38 29.27 32.11 37.66 36.36 19.05 40.58 39.13 27.91 42.00 40.91 39.39 31.82 44.19 29.27 35.19 30.61 40.48 39.02 35.94 29.03 33.90 41.18 36.36 37.50 39.29 29.58 40.74 45.00 40.58 28.74 47.62 40.35 41.27 26.92 37.04 31.94 30.00 K alternative_donor Tim10,CG42497,I_chr2R_17578506_17578580,I_chr2R_17578506_17578584 chr2R - chr2R_17578506_17578580 chr2R_17578506_17578576 chr2R_17578437_17578505;chr2R_17578581_17578627 97.62 97.62 97.12 98.04 98.21 97.40 98.98 99.00 95.05 100.00 97.70 96.69 98.59 98.39 95.18 98.78 96.08 98.82 93.55 96.80 98.97 100.00 96.67 96.55 94.67 98.41 98.63 97.30 95.79 94.83 98.94 98.90 99.04 95.74 98.00 98.18 96.40 94.44 97.62 98.10 96.05 96.43 97.92 100.00 97.67 95.79 96.91 96.52 96.52 98.94 95.18 95.92 96.46 98.11 96.43 100.00 97.20 98.35 K alternative_acceptor mu2,I_chr3L_1945382_1945647 chr3L - chr3L_1945592_1945647;chr3L_1945529_1945647 chr3L_1945574_1945647 chr3L_1945648_1945655;chr3L_1945437_1945528 30.00 50.00 33.33 32.00 25.00 45.45 9.52 28.57 32.26 20.00 33.33 29.17 38.46 45.45 30.00 30.77 18.18 26.67 20.00 34.38 50.00 22.22 35.29 29.41 33.33 25.00 26.67 42.86 33.33 62.50 27.27 57.14 40.00 14.29 0.00 33.33 45.45 36.36 26.67 30.00 33.33 30.00 27.27 22.22 28.57 12.50 30.00 16.67 34.38 23.08 33.33 28.57 44.44 28.57 35.29 28.57 33.33 38.46 K intron_retention CG1399,I_chr2R_3574133_3574191 chr2R - chr2R_3565240_3565323 chr2R_3565239_3565240;chr2R_3565323_3565324 chr2R_3564840_3565239;chr2R_3565324_3565909 81.08 82.81 77.36 97.65 83.72 83.33 83.72 92.55 84.40 62.71 52.17 86.52 81.25 85.11 68.89 84.51 87.10 84.44 83.33 77.31 66.67 69.09 91.01 74.39 82.76 85.71 69.86 75.51 79.71 72.88 76.47 74.51 82.50 88.42 78.26 89.71 74.75 80.36 81.08 87.38 72.13 86.54 76.47 81.93 76.92 73.75 76.71 74.24 85.19 85.26 80.22 76.67 94.12 76.27 77.78 79.66 90.54 81.82 K intron_retention Roughened,I_chr3L_1861677_1861777,I_chr3L_1861677_1861929,I_chr3L_1861677_1862177 chr3L - chr3L_1861677_1861777 chr3L_1861676_1861677;chr3L_1861777_1861778 chr3L_1861577_1861676;chr3L_1861778_1861877 98.53 94.12 96.15 98.53 100.00 96.00 100.00 100.00 100.00 100.00 93.33 100.00 94.12 96.00 100.00 100.00 94.44 95.83 96.30 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 91.67 95.00 93.55 100.00 87.18 92.50 94.12 100.00 100.00 100.00 100.00 93.88 97.44 98.04 94.12 95.45 82.14 97.96 100.00 96.23 100.00 100.00 100.00 100.00 95.65 100.00 96.77 94.74 100.00 90.00 K jcn_only_AA Sp212 chr3R - chr3R_10049251_10049364 chr3R_10049255_10049364 chr3R_10049365_10049530;chr3R_10048474_10049250 96.89 98.39 100.00 98.77 93.94 96.61 96.36 98.72 98.08 91.67 100.00 97.22 100.00 94.00 100.00 96.83 100.00 92.86 98.33 96.91 98.28 93.59 96.88 98.28 94.12 95.56 100.00 NA 96.77 92.50 90.99 95.24 96.30 95.51 98.31 96.67 94.44 95.92 96.92 95.24 94.74 100.00 100.00 100.00 91.11 95.12 100.00 87.88 100.00 98.48 96.34 100.00 92.16 97.06 98.41 95.83 99.21 98.63 K intron_retention CG42394,noncoding_15936,E_chr3R_6675742_6676058 chr3R + chr3R_6675742_6677006 chr3R_6675741_6675742;chr3R_6677006_6677007 chr3R_6675654_6675741;chr3R_6677007_6677210 0.00 0.00 0.63 0.67 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 2.22 0.00 0.00 0.00 0.61 0.00 0.73 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.98 0.87 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 K intron_retention I_chr2L_19644636_19644695,REI_chr2L_19702035_19702145,Nf-YB chr2L + chr2L_19736581_19736633 chr2L_19736580_19736581;chr2L_19736633_19736634 chr2L_19736505_19736580;chr2L_19736634_19736700 8.51 11.36 0.00 6.94 6.45 9.38 11.67 4.00 5.81 6.00 10.71 8.64 12.00 0.00 9.43 5.48 0.00 2.44 10.00 8.42 9.30 8.51 7.55 8.89 17.07 34.62 18.60 13.33 35.42 0.00 7.55 6.25 13.04 9.09 13.04 16.67 5.45 10.00 8.06 7.04 18.33 6.35 12.90 12.82 10.87 5.26 5.77 10.42 5.00 2.78 4.65 5.41 14.89 13.33 4.08 9.09 6.78 4.00 K intron_retention CG5794,I_chr3R_20475643_20475715 chr3R - chr3R_20465487_20465545 chr3R_20465486_20465487;chr3R_20465545_20465546 chr3R_20465381_20465486;chr3R_20465546_20465945 10.46 8.33 5.88 6.45 0.00 4.76 20.83 0.00 14.89 16.00 18.18 14.63 0.00 0.00 11.76 10.00 0.00 0.00 7.41 14.29 8.33 41.18 11.76 10.00 33.33 26.09 18.52 0.00 18.18 14.81 12.50 NA 2.04 15.15 12.00 30.43 10.91 3.70 13.21 3.64 22.22 16.28 14.29 11.54 0.00 15.38 5.56 13.51 6.06 0.00 15.38 22.22 0.00 0.00 4.76 7.14 0.00 0.00 K jcn_only_AD E(Pc) chr2R + chr2R_7339818_7340897;chr2R_7339807_7340897 chr2R_7339889_7340897 chr2R_7340898_7340908;chr2R_7339722_7339806 25.00 NA NA NA NA NA 33.33 NA 33.33 NA NA NA NA NA NA NA NA NA NA 25.00 NA NA 17.39 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 24.24 NA NA NA NA NA NA NA NA NA NA K intron_retention isopeptidase-T-3 chr2R + chr2R_15560103_15560165 chr2R_15560102_15560103;chr2R_15560165_15560166 chr2R_15559799_15560102;chr2R_15560166_15560506 0.00 0.00 0.00 0.00 NA 0.00 3.85 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 13.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 4.76 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4585,I_chr2R_19752558_19752634 chr2R - chr2R_19751932_19752634 chr2R_19751931_19751932;chr2R_19752634_19752635 chr2R_19750513_19751931;chr2R_19752635_19752734 2.26 3.12 0.00 2.04 2.60 0.00 1.91 1.46 2.63 5.71 3.12 1.74 0.00 0.00 2.25 4.08 2.35 4.05 0.00 2.80 2.90 8.33 2.08 2.50 0.00 0.00 4.88 12.20 5.13 0.00 2.56 0.00 0.00 4.13 2.27 3.57 3.17 0.00 2.82 2.74 0.00 1.82 3.03 0.00 0.00 1.43 4.11 NA 0.85 0.00 1.05 3.39 0.00 4.92 2.35 1.47 1.72 10.53 K multi_cassette CLIP-190,I_chr2L_17394493_17404060,I_chr2L_17401291_17404060,F_chr2L_17401582_17401681,I_chr2L_17401582_17402303 chr2L + chr2L_17401291_17404060 chr2L_17401291_17401518;chr2L_17401582_17402374;chr2L_17402486_17404060 chr2L_17401519_17401581;chr2L_17402375_17402485 chr2L_17401191_17401290;chr2L_17404061_17404076 100.00 100.00 90.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 85.71 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 90.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG8949,I_chrX_16971474_16971708,I_chrX_16971501_16971713 chrX - chrX_16971474_16971713 chrX_16971501_16971713 chrX_16971714_16971808;chrX_16971401_16971473 1.95 4.17 1.89 4.35 0.00 1.92 0.00 0.00 0.97 6.25 0.00 1.94 1.96 1.79 2.38 4.76 0.00 0.00 0.00 2.50 4.76 0.00 2.41 1.56 2.94 5.26 6.00 3.70 5.36 1.96 0.00 0.00 3.12 1.39 6.45 3.45 4.41 0.00 3.51 0.00 NA 1.08 0.00 0.00 6.06 5.88 6.06 2.56 2.27 4.76 1.22 0.00 0.00 0.00 0.00 6.90 3.23 0.00 K alternative_acceptor ck,RI_chr2L_15057324_15057667 chr2L - chr2L_15053518_15057667 chr2L_15053523_15057667 chr2L_15057668_15057767;chr2L_15053414_15053517 57.27 NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA 54.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA K intron_retention Dyrk3,I_chr4_1231226_1233305,I_chr4_1232931_1232996,I_chr4_1233845_1234170 chr4 - chr4_1231226_1232378 chr4_1231225_1231226;chr4_1232378_1232379 chr4_1231145_1231225;chr4_1232379_1233241 0.00 NA 0.00 1.92 0.00 0.00 0.00 0.00 0.00 NA 0.00 1.85 0.00 0.00 0.00 0.00 0.00 NA 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 5.26 NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K intron_retention RI_chr3R_5088705_5088796,Aats-trp,RI_chr3R_5090799_5091007 chr3R - chr3R_5090780_5091007 chr3R_5090779_5090780;chr3R_5091007_5091008 chr3R_5090699_5090779;chr3R_5091008_5091107 100.00 100.00 100.00 100.00 100.00 100.00 99.32 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 98.53 100.00 100.00 100.00 100.00 100.00 100.00 98.37 100.00 98.46 100.00 97.16 99.32 98.51 98.68 98.39 100.00 100.00 98.73 98.25 100.00 98.77 98.53 98.65 100.00 98.82 98.90 100.00 98.08 97.14 100.00 98.57 96.97 100.00 100.00 99.09 98.68 100.00 100.00 98.44 100.00 100.00 97.62 K alternative_donor RI_chrX_1796525_1796585,mip130,I_chrX_1820956_1821011,CG11596 chrX + chrX_1821927_1822366 chrX_1821953_1822366 chrX_1822367_1822613;chrX_1821726_1821926 93.33 92.59 98.25 88.00 97.44 86.96 92.73 94.59 92.39 90.00 97.06 100.00 97.06 95.35 94.64 92.98 97.06 98.08 95.92 93.00 94.87 88.89 98.25 100.00 92.86 91.49 93.55 95.83 83.87 88.89 76.32 91.67 91.46 91.46 90.70 90.91 95.59 90.91 95.00 93.33 93.75 93.07 96.97 84.62 88.57 92.00 96.97 74.42 95.06 85.71 93.33 96.15 97.14 86.05 98.15 97.62 97.73 89.09 N intron_retention dpr3 chr2L - chr2L_2059984_2065610 chr2L_2059983_2059984;chr2L_2065610_2065611 chr2L_2058819_2059983;chr2L_2065611_2065743 44.00 NA NA 44.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention RabX6 chr3L + chr3L_690800_690948 chr3L_690799_690800;chr3L_690948_690949 chr3L_690618_690799;chr3L_690949_691953 0.00 0.00 14.29 0.00 0.00 0.00 4.76 4.55 0.00 0.00 NA 0.00 NA 0.00 0.00 8.70 NA NA 5.26 0.00 NA 26.67 NA 5.88 NA 5.56 7.69 NA 16.67 0.00 NA 0.00 0.00 10.71 0.00 0.00 0.00 NA 4.76 0.00 NA 2.94 NA 0.00 NA 0.00 NA NA 6.67 NA 15.00 NA NA 14.29 0.00 0.00 0.00 0.00 K intron_retention trio,I_chr3L_999683_1009321 chr3L - chr3L_999376_999446 chr3L_999375_999376;chr3L_999446_999447 chr3L_999260_999375;chr3L_999447_999542 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.20 0.00 0.00 0.00 0.29 1.05 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG5991 chr3R + chr3R_19876703_19877425;chr3R_19876703_19877421 chr3R_19876703_19877411 chr3R_19876688_19876702;chr3R_19877426_19877477 57.14 NA NA 66.67 NA NA 40.00 43.75 46.15 NA NA 54.55 NA 50.00 36.36 63.64 60.00 NA 57.14 40.00 NA NA 60.00 NA NA 57.14 60.00 50.00 55.56 71.43 85.71 NA 58.33 57.14 50.00 57.14 66.67 80.00 NA 52.94 57.14 56.25 55.56 66.67 NA 50.00 57.14 50.00 53.33 60.00 44.44 NA 60.00 66.67 40.00 62.50 83.33 55.56 N intron_retention CG32016,I_chr4_972691_972763,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_962905_964307 chr4_962904_962905;chr4_964307_964308 chr4_962836_962904;chr4_964308_964707 100.00 100.00 100.00 100.00 NA 100.00 67.86 71.43 100.00 NA 100.00 75.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 66.67 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 61.11 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 K cassette arr,I_chr2R_9343426_9343486,I_chr2R_9347031_9370659 chr2R - chr2R_9347031_9370659 chr2R_9347031_9369280;chr2R_9369590_9370659 chr2R_9369281_9369589 chr2R_9346931_9347030;chr2R_9370660_9370692 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 94.74 NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 K intron_retention CG9674,I_chr3L_16785706_16785748,I_chr3L_16793055_16800660 chr3L - chr3L_16785687_16785748 chr3L_16785686_16785687;chr3L_16785748_16785749 chr3L_16785606_16785686;chr3L_16785749_16785848 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.40 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Rox8,I_chr3R_19872211_19872659,I_chr3R_19872214_19872630,I_chr3R_19872214_19872636,I_chr3R_19872214_19872838,I_chr3R_19876189_19876240 chr3R - chr3R_19872211_19873682 chr3R_19872214_19873682 chr3R_19873683_19873709;chr3R_19872114_19872210 90.40 NA 80.00 96.15 NA NA NA 90.00 90.32 NA NA 90.48 NA NA NA NA NA NA 85.71 80.56 NA NA NA NA NA NA NA NA NA NA NA NA NA 91.89 NA NA NA NA NA NA NA 90.48 NA NA NA NA NA NA 97.37 NA NA NA NA NA NA NA NA NA N jcn_only_AD TepIV,EI_chr2L_19548696_19549582 chr2L + chr2L_19553294_19553361 chr2L_19553303_19553361 chr2L_19553362_19553915;chr2L_19552956_19553293 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette ben chrX + chrX_13890557_13892127 chrX_13890557_13890648;chrX_13891016_13892127 chrX_13890649_13891015 chrX_13890387_13890556;chrX_13892128_13892800 0.78 0.00 1.69 1.65 1.27 0.79 2.21 0.55 0.95 0.00 0.00 0.82 1.25 0.79 0.67 0.75 0.00 0.00 0.75 1.10 1.12 0.00 0.78 0.00 0.00 0.00 0.00 1.56 0.00 1.37 0.69 1.90 1.12 1.04 1.11 0.00 0.00 0.00 0.00 1.85 0.71 0.42 1.03 0.00 1.26 0.82 0.00 0.74 1.27 0.00 0.88 1.15 1.20 1.06 0.00 0.88 0.00 1.10 K cassette CG9795,I_chr3R_149612_149686,RI_chr3R_149612_150058 chr3R + chr3R_149612_150058 chr3R_149612_149674;chr3R_149887_150058 chr3R_149675_149886 chr3R_149512_149611;chr3R_150059_150064 100.00 100.00 100.00 94.29 100.00 100.00 100.00 100.00 98.36 94.12 90.00 97.62 100.00 100.00 100.00 100.00 100.00 92.31 100.00 98.08 100.00 96.67 92.50 100.00 94.44 100.00 100.00 100.00 94.74 100.00 96.15 100.00 100.00 97.56 96.55 95.24 100.00 100.00 100.00 97.96 95.24 100.00 94.44 100.00 94.44 96.77 96.77 96.67 97.92 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 97.37 K intron_retention CG32452 chr3L + chr3L_22710989_22711074 chr3L_22710988_22710989;chr3L_22711074_22711075 chr3L_22710839_22710988;chr3L_22711075_22712846 20.71 21.43 0.00 38.46 15.38 NA NA 25.00 17.39 NA NA 15.00 NA NA NA 14.29 NA NA NA 14.29 NA NA 18.18 26.67 NA 28.57 83.33 NA 30.77 NA 33.33 NA NA NA NA NA 19.05 26.67 21.43 9.09 NA 23.53 NA 6.67 NA 23.08 21.43 NA 14.29 20.00 7.14 NA NA NA NA 18.75 27.78 NA K jcn_only_AD CG2813 chr2L + chr2L_575091_575143 chr2L_575095_575143 chr2L_575144_575743;chr2L_574780_575090 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 2.44 0.00 NA 0.00 NA NA 0.00 0.00 3.85 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3L_20306985_20307177,CG6680 chr3L + chr3L_20311914_20311970 chr3L_20311913_20311914;chr3L_20311970_20311971 chr3L_20311484_20311913;chr3L_20311971_20312241 0.00 0.00 0.00 7.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 5.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention CG14253,E_chr3R_22806425_22807258 chr3R + chr3R_22806454_22807254 chr3R_22806453_22806454;chr3R_22807254_22807255 chr3R_22806242_22806453;chr3R_22807255_22807473 100.00 100.00 100.00 100.00 100.00 100.00 90.48 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor mfas,I_chr3R_7811954_7812017,RI_chr3R_7818607_7818970 chr3R - chr3R_7815051_7817793;chr3R_7815246_7817793 chr3R_7815048_7817793 chr3R_7817794_7817801;chr3R_7814932_7815047 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.32 NA 0.00 0.00 0.92 0.75 0.00 NA 0.00 0.00 0.00 0.40 0.00 0.71 NA 0.57 NA 0.76 0.62 0.00 0.89 0.00 0.00 0.82 0.00 0.00 0.49 0.31 0.34 0.00 0.00 0.83 0.00 0.00 0.00 0.44 0.00 0.33 NA 0.98 0.00 0.00 NA NA 0.00 0.00 0.00 K intron_retention Ge-1,Reps,I_chr2L_11105525_11105656 chr2L - chr2L_11097006_11097061 chr2L_11097005_11097006;chr2L_11097061_11097062 chr2L_11096765_11097005;chr2L_11097062_11097299 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 4.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor rl,I_chr2RHet_199154_207044,RI_chr2RHet_203476_203577,RI_chr2RHet_203592_207044,I_chr2RHet_232696_247338,RI_chr2RHet_240197_247338 chr2RHet + chr2RHet_198760_198981 chr2RHet_198817_198981 chr2RHet_198982_199153;chr2RHet_198753_198759 60.00 NA NA 63.64 NA NA 63.64 63.64 45.45 NA NA NA NA NA NA 18.18 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 55.56 NA NA NA NA NA NA NA NA NA K alternative_acceptor B52,E_chr3R_9488770_9491174 chr3R + chr3R_9491971_9492140;chr3R_9491971_9492077 chr3R_9491971_9492016 chr3R_9491806_9491970;chr3R_9492141_9492586 0.19 0.00 0.00 0.00 0.63 1.02 0.50 0.46 0.22 0.45 0.00 0.20 0.00 0.00 0.00 0.00 0.79 0.55 0.00 0.37 0.71 0.17 0.14 0.16 0.26 0.56 0.39 0.21 0.44 0.00 0.40 0.00 0.52 0.91 0.00 0.00 0.19 0.21 0.15 0.19 0.56 0.19 0.72 0.00 0.00 0.21 0.00 0.00 0.20 0.00 0.18 0.33 0.00 0.33 0.00 0.18 0.00 0.56 K cassette svr,RI_chrX_421417_421591 chrX + chrX_391423_396017 chrX_391423_393881;chrX_394642_396017 chrX_393882_394641 chrX_391354_391422;chrX_396018_396253 61.90 64.44 69.09 78.38 56.82 54.17 56.06 72.97 66.02 65.22 70.21 61.73 77.36 70.00 62.50 72.60 54.17 56.52 61.67 68.50 69.39 51.61 66.13 70.73 51.72 61.90 46.67 57.58 29.17 51.02 51.92 57.89 60.78 63.41 57.50 62.16 72.73 63.16 62.50 48.21 63.16 59.57 64.00 62.22 63.33 50.00 59.09 57.14 60.82 58.97 48.08 57.58 50.00 66.67 65.45 76.92 69.23 60.53 K intron_retention CG14478 chr2R + chr2R_13350011_13350065 chr2R_13350010_13350011;chr2R_13350065_13350066 chr2R_13349499_13350010;chr2R_13350066_13352421 80.00 71.43 87.50 94.44 76.92 84.62 71.43 85.19 88.10 84.62 69.23 84.85 88.89 76.19 77.78 78.26 80.00 76.47 80.00 85.19 76.92 62.50 89.66 77.27 76.19 100.00 84.62 85.19 75.00 83.33 77.78 90.00 70.59 83.33 77.27 100.00 90.48 75.00 84.21 70.73 55.56 82.05 90.91 66.67 62.50 67.86 86.67 67.57 88.46 69.70 87.50 93.33 80.00 77.78 87.50 78.57 80.95 62.50 K alternative_donor CG2694,I_chrX_2608271_2608320,I_chrX_2609471_2609546,RI_chrX_2622297_2622430,RI_chrX_2622435_2622577 chrX + chrX_2608244_2608320 chrX_2608271_2608320 chrX_2608321_2608420;chrX_2608171_2608243 39.23 NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA 27.27 NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA 38.46 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention ChLD3 chr2L + chr2L_16741305_16741365 chr2L_16741304_16741305;chr2L_16741365_16741366 chr2L_16740572_16741304;chr2L_16741366_16741888 20.00 0.00 12.50 26.32 20.00 NA 41.18 10.53 20.69 NA NA 7.69 NA NA 14.29 25.00 14.29 14.29 26.67 7.84 NA NA 21.43 33.33 NA NA NA NA NA NA 23.08 NA NA 18.18 NA NA 23.53 NA 0.00 36.36 NA 20.69 30.77 6.06 15.38 12.50 NA 0.00 31.25 NA 23.53 NA NA NA 13.33 NA 36.36 NA K jcn_only_AA CG7692 chr3L + chr3L_17346838_17346895 chr3L_17346838_17346892 chr3L_17346411_17346837;chr3L_17346896_17347143 90.48 NA NA NA NA NA 90.48 NA 90.32 NA NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 95.24 NA NA NA NA NA NA NA 95.45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Sec22,I_chrX_700593_700676,RI_chrX_700599_700665 chrX + chrX_700593_700665 chrX_700592_700593;chrX_700665_700666 chrX_700499_700592;chrX_700666_700765 4.08 0.00 2.33 13.21 2.56 3.33 7.69 7.55 4.48 0.00 7.32 5.45 7.41 10.53 4.08 0.00 3.23 6.25 13.79 6.94 2.94 3.77 5.08 3.85 0.00 5.26 7.14 14.89 10.87 6.82 4.76 0.00 2.27 2.50 11.76 0.00 1.59 0.00 3.70 9.86 5.00 7.14 13.79 0.00 5.71 6.00 0.00 0.00 3.39 6.00 11.54 0.00 4.35 0.00 3.92 3.92 0.00 0.00 K intron_retention nito,I_chr2R_3852832_3852883 chr2R + chr2R_3852832_3856755 chr2R_3852831_3852832;chr2R_3856755_3856756 chr2R_3852732_3852831;chr2R_3856756_3856981 98.39 97.92 97.78 100.00 97.56 97.06 98.28 100.00 100.00 100.00 100.00 100.00 96.97 100.00 97.92 97.96 100.00 97.78 100.00 100.00 100.00 98.41 97.10 98.00 96.67 100.00 100.00 97.37 98.39 97.37 95.92 98.15 99.25 100.00 100.00 97.87 98.48 92.50 96.88 96.67 98.21 100.00 97.22 96.67 96.43 98.39 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 98.08 98.96 K alternative_donor for,I_chr2L_3627621_3631522 chr2L - chr2L_3627636_3631976;chr2L_3627636_3631522;chr2L_3627636_3631962 chr2L_3627636_3631804 chr2L_3626337_3627635;chr2L_3631977_3632151 0.00 NA NA 25.00 NA NA NA 0.00 20.00 NA NA 25.00 NA NA NA 0.00 0.00 NA 0.00 33.33 NA 20.00 0.00 0.00 NA NA 0.00 NA NA 33.33 50.00 NA 0.00 25.00 20.00 NA NA NA NA 0.00 NA 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 0.00 NA NA NA NA NA NA NA K cassette MTF-1,RI_chr3L_9427314_9427495 chr3L + chr3L_9424434_9428956;chr3L_9423937_9428956 chr3L_9424434_9427495,chr3L_9423937_9427495;chr3L_9427599_9428956 chr3L_9427496_9427598 chr3L_9423442_9423936;chr3L_9428957_9429107 93.94 NA 90.00 100.00 100.00 100.00 93.33 94.12 96.00 NA NA 100.00 100.00 90.00 90.91 100.00 100.00 100.00 90.00 100.00 100.00 93.75 88.24 84.62 100.00 72.73 91.67 100.00 72.73 100.00 92.86 NA 90.00 100.00 88.89 100.00 93.33 87.50 92.86 94.12 100.00 84.21 100.00 92.86 85.71 90.00 88.89 88.89 95.00 100.00 92.86 100.00 100.00 NA 92.31 100.00 100.00 91.67 K jcn_only_AA CG12567,I_chr2LHet_21570_31874 chr2LHet - chr2LHet_21374_21435 chr2LHet_21384_21435 chr2LHet_21436_21569;chr2LHet_21308_21373 81.58 83.33 84.93 71.76 78.05 74.00 71.43 79.65 84.03 85.29 72.09 79.65 90.38 84.62 89.02 80.92 80.70 87.14 81.63 80.85 84.62 81.58 82.98 81.63 76.36 74.65 86.30 100.00 82.61 80.00 73.03 84.85 58.62 79.20 85.19 73.91 72.41 74.47 77.08 81.93 85.71 86.55 78.26 85.53 75.00 69.81 85.71 85.37 87.50 88.46 82.72 80.00 81.08 76.92 73.63 74.00 91.30 83.72 K alternative_donor Elongin-C,I_chr2R_15332885_15332943,I_chr2R_15332885_15333223,I_chr2R_15332885_15333260,I_chr2R_15332885_15333452,I_chr2R_15333309_15333432,I_chr2R_15336252_15338966 chr2R - chr2R_15332885_15333452 chr2R_15332885_15333432 chr2R_15332785_15332884;chr2R_15333453_15333532 100.00 100.00 100.00 99.48 100.00 100.00 100.00 100.00 100.00 100.00 99.08 99.59 100.00 100.00 100.00 100.00 100.00 99.28 99.24 99.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.34 100.00 99.35 100.00 100.00 100.00 100.00 99.44 99.28 99.61 99.46 99.61 100.00 100.00 99.42 99.62 100.00 99.22 99.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Droj2,RI_chr3R_9207981_9208471,RI_chr3R_9208529_9209185 chr3R + chr3R_9210302_9210391 chr3R_9210301_9210302;chr3R_9210391_9210392 chr3R_9209957_9210301;chr3R_9210392_9211007 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 K intron_retention CG13771 chr2L - chr2L_6663068_6663131 chr2L_6663067_6663068;chr2L_6663131_6663132 chr2L_6662854_6663067;chr2L_6663132_6663374 10.48 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA 14.29 NA NA NA NA NA NA NA NA NA NA K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2388436;chrX_2388671_2389073;chrX_2389272_2389644;chrX_2389762_2395659 chrX_2388437_2388670;chrX_2389074_2389271;chrX_2389645_2389761 chrX_2387149_2387248;chrX_2395660_2395759 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.75 1.17 0.00 0.00 5.32 0.00 1.72 0.00 0.00 0.00 0.00 1.22 0.99 0.00 2.27 0.00 2.27 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 1.12 0.00 1.25 1.96 0.00 1.45 0.00 2.74 7.14 0.00 NA 1.54 0.56 0.00 0.00 0.00 0.00 NA 1.02 0.00 0.00 2.04 K intron_retention His2Av,E_chr3R_22693209_22693387 chr3R + chr3R_22693209_22693390 chr3R_22693208_22693209;chr3R_22693390_22693391 chr3R_22693131_22693208;chr3R_22693391_22693487 1.04 0.47 1.01 0.95 0.66 0.75 1.57 1.55 1.18 1.48 0.59 0.74 0.53 0.62 0.72 1.41 0.83 0.79 0.54 0.81 0.48 1.87 1.46 0.94 1.87 0.81 1.89 2.77 1.69 0.99 1.04 1.13 0.90 1.45 1.48 1.83 1.87 1.43 0.71 1.28 0.67 1.08 1.20 0.73 1.32 1.12 0.63 0.82 1.28 0.90 1.17 1.31 0.88 1.00 1.15 1.54 1.13 0.89 K intron_retention sbr,RI_chrX_10731248_10731484,CG32669 chrX - chrX_10731248_10740139 chrX_10731247_10731248;chrX_10740139_10740140 chrX_10731148_10731247;chrX_10740140_10740227 0.00 0.00 0.00 0.00 2.50 0.00 1.32 0.96 3.03 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 1.92 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.08 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 4.17 0.00 K intron_retention cv,RI_chrX_5584191_5585924,I_chrX_5584351_5585924,I_chrX_5584353_5585924,I_chrX_5584357_5585924,I_chrX_5584683_5585924 chrX + chrX_5585022_5585924 chrX_5585021_5585022;chrX_5585924_5585925 chrX_5584351_5585021;chrX_5585925_5586024 3.92 0.00 3.08 0.00 5.26 2.27 2.00 9.52 4.65 0.00 5.26 5.26 0.00 0.00 6.12 0.00 4.65 0.00 3.92 2.44 4.00 22.22 4.65 3.12 0.00 2.86 6.25 14.29 11.76 0.00 0.00 7.69 4.76 0.00 6.67 0.00 8.06 7.32 6.56 6.90 0.00 4.21 0.00 7.32 1.92 0.00 2.94 2.70 4.12 5.71 4.88 0.00 0.00 5.56 2.78 4.65 2.08 4.17 K intron_retention tsr,I_chr2R_19932706_19933121 chr2R - chr2R_19932443_19932514 chr2R_19932442_19932443;chr2R_19932514_19932515 chr2R_19932337_19932442;chr2R_19932515_19932705 0.13 0.05 0.10 0.16 0.19 0.19 0.23 0.19 0.21 0.00 0.00 0.29 0.00 0.06 0.13 0.07 0.12 0.05 0.05 0.16 0.23 0.11 0.09 0.18 0.19 0.17 0.37 0.80 0.44 0.00 0.09 0.13 0.00 0.16 0.24 0.25 0.00 0.11 0.23 0.26 0.10 0.16 0.00 0.00 0.16 0.00 0.05 0.14 0.26 0.07 0.22 0.13 0.06 0.11 0.17 0.04 0.06 0.04 K alternative_donor Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045251_16046104;chr3L_16045316_16046104;chr3L_16045275_16046104 chr3L_16045277_16046104 chr3L_16046105_16046204;chr3L_16045216_16045250 4.17 3.23 5.00 4.05 13.04 2.27 7.69 5.00 4.00 4.55 3.45 2.70 6.67 2.04 4.17 6.25 8.11 7.69 3.45 4.94 0.00 5.26 3.70 5.88 3.57 3.51 6.38 0.00 4.76 5.66 5.66 0.00 3.33 4.44 0.00 5.41 3.85 3.57 6.25 1.56 6.90 6.82 2.33 5.00 0.00 0.00 0.00 3.90 5.26 0.00 5.13 6.25 0.00 NA 8.47 4.17 8.33 0.00 K jcn_only_AD CG14225,I_chrX_19569702_19569879,I_chrX_19573364_19573474 chrX - chrX_19567504_19568543 chrX_19567504_19568537 chrX_19566669_19567503;chrX_19568544_19569688 32.43 31.34 36.80 35.35 35.15 34.82 39.61 34.44 32.33 32.43 31.25 30.58 26.97 33.51 29.10 28.57 33.80 34.72 30.84 37.96 30.19 39.93 34.43 33.44 32.39 39.36 38.43 32.24 29.27 30.10 33.10 32.52 27.81 38.84 37.11 31.39 30.07 37.39 32.52 29.02 35.76 31.43 31.91 32.69 29.21 31.97 31.80 31.85 33.54 38.43 36.97 32.85 28.88 40.49 29.52 30.63 30.92 23.53 K intron_retention Nup358,I_chr3R_21078958_21079044,CG11857,CG11858,CG11859 chr3R + chr3R_21084714_21084791 chr3R_21084713_21084714;chr3R_21084791_21084792 chr3R_21084702_21084713;chr3R_21084792_21085154 99.54 100.00 100.00 99.48 98.04 100.00 99.42 99.55 99.52 98.25 96.34 99.50 100.00 100.00 100.00 99.58 100.00 98.81 99.25 99.64 98.89 98.90 100.00 100.00 100.00 99.00 100.00 100.00 97.87 98.75 98.66 98.90 98.84 99.53 100.00 100.00 98.46 100.00 100.00 99.36 100.00 99.45 100.00 100.00 98.75 99.33 98.88 100.00 99.54 98.21 100.00 100.00 100.00 97.44 99.22 100.00 97.17 100.00 K alternative_donor TMS1 chr3L + chr3L_16405981_16406347 chr3L_16406009_16406347 chr3L_16406348_16406903;chr3L_16405851_16405980 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA ssp4,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13413922_13414338;chr2R_13413823_13414338 chr2R_13413919_13414338 chr2R_13414339_13414406;chr2R_13412209_13413822 18.07 19.63 15.15 14.77 17.53 19.66 18.75 17.61 20.24 6.82 21.59 16.53 24.49 17.78 16.80 21.77 21.10 12.62 20.91 15.25 18.45 18.40 14.22 15.60 17.24 18.52 18.07 15.28 13.54 18.18 20.00 20.22 18.57 16.24 13.77 19.86 15.38 22.48 14.74 20.30 23.68 13.68 13.33 21.80 21.37 19.70 16.48 12.12 15.93 21.35 13.33 18.18 23.40 10.98 20.44 19.74 8.75 14.16 K intron_retention CG18432 chr2R + chr2R_13428327_13428384 chr2R_13428326_13428327;chr2R_13428384_13428385 chr2R_13427507_13428326;chr2R_13428385_13429328 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD BtbVII,I_chr3L_3150858_3150927,I_chr3L_3151185_3151263 chr3L + chr3L_3148688_3149627;chr3L_3148738_3149627 chr3L_3148748_3149627 chr3L_3149628_3150153;chr3L_3148679_3148687 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 K intron_retention sima,F_chr3R_25908044_25945850 chr3R + chr3R_25893557_25893619 chr3R_25893556_25893557;chr3R_25893619_25893620 chr3R_25893335_25893556;chr3R_25893620_25893786 10.53 8.33 4.76 21.43 4.76 14.29 4.44 7.32 10.71 NA 0.00 10.71 6.25 13.33 16.67 17.39 0.00 4.00 2.38 16.28 10.53 6.45 23.68 12.90 NA 3.45 33.33 23.53 9.09 0.00 11.54 NA 21.43 4.88 10.00 17.39 7.14 12.90 14.29 15.38 0.00 8.93 19.05 0.00 NA 5.56 NA 7.32 16.33 16.00 13.16 0.00 NA NA 10.26 38.46 20.00 NA K jcn_only_AA Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16106466_16106984;chr3L_16106466_16106995 chr3L_16106466_16107411 chr3L_16106332_16106465 51.35 53.33 66.67 48.00 46.51 68.09 40.00 54.65 47.66 60.00 40.91 57.72 46.94 58.06 55.93 54.72 35.14 60.38 47.22 59.49 34.15 78.18 42.31 46.84 54.17 44.26 51.90 68.00 47.06 51.35 47.83 40.00 62.14 55.56 58.62 46.97 42.86 48.39 46.43 55.05 42.50 46.02 46.30 47.37 61.22 48.33 53.66 55.10 53.64 55.17 54.21 41.07 45.45 58.70 46.27 52.38 40.00 59.26 K jcn_only_AA CG5514,RI_chr3R_23768206_23768306,Gp93 chr3R + chr3R_23767856_23768306;chr3R_23767856_23768156 chr3R_23767856_23768309 chr3R_23765429_23767855;chr3R_23768310_23768406 71.91 80.65 92.59 82.76 71.79 68.85 86.54 72.34 75.38 68.57 85.71 66.98 70.73 72.34 70.18 71.67 63.89 78.95 76.19 75.97 76.32 52.78 76.71 73.68 77.97 70.69 71.05 48.98 70.15 82.22 74.19 64.56 70.53 79.22 70.49 60.38 70.37 69.57 72.54 71.54 70.53 74.14 69.77 67.27 68.55 72.48 80.51 71.62 71.74 82.54 68.57 NA 85.23 74.53 71.83 72.00 76.87 80.46 K jcn_only_AA CG11779,CG5835,I_chr3R_14982264_14982380,I_chr3R_14982295_14982380 chr3R - chr3R_14982264_14982380 chr3R_14982269_14982380 chr3R_14982381_14982480;chr3R_14982195_14982263 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.28 98.48 NA 100.00 96.67 100.00 98.18 100.00 100.00 95.65 100.00 100.00 100.00 98.57 100.00 100.00 100.00 97.44 98.78 96.55 100.00 100.00 94.81 100.00 97.41 96.77 100.00 98.92 100.00 98.18 100.00 99.32 100.00 100.00 100.00 100.00 98.72 100.00 98.61 100.00 100.00 100.00 98.77 100.00 100.00 98.61 98.28 98.33 98.68 99.27 K alternative_donor rudimentary,I_chrX_16561903_16561969 chrX + chrX_16561893_16561969 chrX_16561903_16561969 chrX_16561970_16562069;chrX_16561803_16561892 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 1.64 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 1.69 0.76 0.00 0.00 1.52 0.86 0.41 0.00 0.00 0.00 0.36 0.00 0.43 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.75 0.00 0.00 0.57 0.00 0.00 0.52 0.00 0.47 K jcn_only_AA CG10737 chr2R + chr2R_15062814_15063770;chr2R_15062814_15063692 chr2R_15062814_15063752 chr2R_15062592_15062813;chr2R_15063771_15063852 5.10 6.54 7.60 5.62 5.38 5.59 22.78 5.69 6.99 8.82 4.84 4.27 4.03 7.14 6.99 2.87 4.17 2.82 4.51 5.46 9.52 8.33 3.26 3.55 2.88 1.42 1.45 9.84 5.10 4.12 4.69 5.63 8.29 4.72 3.36 2.40 1.91 6.94 4.84 3.45 4.32 5.43 6.25 3.21 15.91 3.51 3.90 5.50 6.05 0.96 4.55 8.33 6.59 3.70 3.98 5.33 5.34 5.77 K intron_retention CG1667,RI_chr2R_5731409_5731653,I_chr2R_5732410_5732504 chr2R + chr2R_5731914_5731965 chr2R_5731913_5731914;chr2R_5731965_5731966 chr2R_5731846_5731913;chr2R_5731966_5732034 0.00 0.00 0.90 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RI_chr3L_707623_707678,CkIIalpha-i3,CG13896,RI_chr3L_711692_711744 chr3L - chr3L_708929_708990 chr3L_708928_708929;chr3L_708990_708991 chr3L_708612_708928;chr3L_708991_709023 0.00 0.00 NA 4.76 NA NA 0.00 0.00 0.00 NA NA 0.00 5.00 NA 0.00 0.00 0.00 0.00 0.00 2.15 NA 0.00 0.00 NA NA 6.67 25.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA 0.00 NA 0.00 NA 0.00 NA 0.00 4.00 NA NA NA NA NA 0.00 0.00 0.00 0.00 K intron_retention Kdm4B chr2R - chr2R_9085665_9085717 chr2R_9085664_9085665;chr2R_9085717_9085718 chr2R_9085182_9085664;chr2R_9085718_9085796 94.44 93.75 100.00 100.00 91.67 93.75 90.62 91.89 93.48 100.00 NA 89.74 100.00 94.74 95.24 100.00 95.00 91.67 96.55 86.21 93.75 NA 100.00 100.00 100.00 100.00 80.00 NA 81.25 100.00 91.30 90.00 95.65 94.87 NA 100.00 83.33 NA 90.00 93.33 100.00 86.84 92.86 NA NA 85.71 100.00 85.29 97.44 NA 94.44 91.67 NA NA 95.83 NA NA 100.00 K intron_retention CG10050,RI_chr3R_3075676_3075741 chr3R + chr3R_3075680_3075741 chr3R_3075679_3075680;chr3R_3075741_3075742 chr3R_3075471_3075679;chr3R_3075742_3075841 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 6.25 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 6.67 0.00 NA 5.56 NA NA NA 0.00 NA 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 NA 0.00 K intron_retention I_chr3L_21265768_21265914,ppl chr3L - chr3L_21273890_21273950 chr3L_21273889_21273890;chr3L_21273950_21273951 chr3L_21273496_21273889;chr3L_21273951_21274229 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 5.45 0.00 0.00 0.00 0.00 0.00 3.23 5.00 0.00 3.57 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 K intron_retention CG9003,I_chr2R_7531685_7531831,RI_chr2R_7538713_7538828 chr2R - chr2R_7531685_7531831 chr2R_7531684_7531685;chr2R_7531831_7531832 chr2R_7531585_7531684;chr2R_7531832_7531921 100.00 94.12 100.00 100.00 90.91 100.00 100.00 96.30 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 94.74 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 97.06 NA 100.00 100.00 100.00 94.12 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 90.91 100.00 91.67 K alternative_acceptor CG2004,I_chrX_8608130_8608508,RI_chrX_8608147_8608508,I_chrX_8608169_8608438 chrX - chrX_8608169_8608508;chrX_8608130_8608508;chrX_8608147_8608508 chrX_8608150_8608508 chrX_8608509_8608538;chrX_8608069_8608129 0.00 0.00 0.00 0.00 0.00 0.00 12.00 0.00 0.00 5.26 0.00 5.26 0.00 9.52 8.70 5.88 0.00 0.00 0.00 2.44 0.00 0.00 6.90 0.00 0.00 0.00 0.00 4.88 0.00 7.69 0.00 0.00 0.00 6.45 0.00 0.00 0.00 4.35 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 6.67 0.00 0.00 8.00 0.00 0.00 0.00 K alternative_donor I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17183481_17200781,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781 chr3R - chr3R_17190715_17200781 chr3R_17190715_17190859 chr3R_17190579_17190714;chr3R_17200782_17200881 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Ptp61F,RI_chr3L_1345162_1345493 chr3L - chr3L_1345162_1345497 chr3L_1345162_1345493 chr3L_1345062_1345161;chr3L_1345498_1345593 0.50 0.57 0.59 1.27 0.00 1.37 0.58 0.00 0.00 0.00 0.00 0.41 0.78 0.00 0.65 0.00 0.00 0.00 0.00 0.43 0.70 0.37 0.51 0.51 1.02 0.00 0.00 0.68 0.00 0.44 1.25 1.24 0.27 0.97 0.66 0.68 0.80 0.65 0.90 0.34 0.61 0.00 0.84 0.50 1.37 0.00 0.00 0.64 0.79 0.50 1.03 0.93 1.82 0.00 0.00 0.47 0.00 0.33 K intron_retention bel,I_chr3R_4484110_4485922 chr3R - chr3R_4481629_4481708 chr3R_4481628_4481629;chr3R_4481708_4481709 chr3R_4480932_4481628;chr3R_4481709_4483565 4.56 3.48 6.78 3.53 4.76 7.27 6.00 4.62 2.82 6.98 3.85 3.40 5.26 5.13 1.04 13.79 6.35 9.09 11.11 5.00 5.88 4.56 3.91 5.75 0.00 3.39 4.95 7.63 6.25 3.96 0.00 7.14 3.60 3.88 4.41 5.92 6.32 4.08 4.49 3.02 5.86 3.61 5.45 4.88 4.14 6.45 3.47 4.07 3.70 4.17 4.88 0.00 6.04 0.00 3.37 3.54 3.47 5.87 K alternative_last_exon l(2)03709,I_chr2R_14707617_14707700,I_chr2R_14708048_14708095 chr2R + chr2R_14708789_14709480 chr2R_14708789_14708997,chr2R_14708789_14708994 chr2R_14709481_14709793 chr2R_14708998_14709344 chr2R_14708689_14708788 64.59 64.45 64.72 85.64 60.10 63.57 77.46 72.45 67.51 32.94 75.23 73.87 68.99 72.88 64.74 61.97 68.53 62.65 65.62 68.44 65.64 37.50 63.89 60.47 75.74 78.01 65.63 64.16 61.68 56.21 67.51 52.11 44.47 69.74 65.54 86.46 54.95 60.33 55.26 64.34 65.82 65.47 69.39 63.99 40.55 61.87 63.21 52.41 72.11 59.48 63.59 67.67 66.88 62.17 67.27 60.74 64.59 59.93 K intron_retention CG7911 chr3R - chr3R_25830172_25830303 chr3R_25830171_25830172;chr3R_25830303_25830304 chr3R_25830026_25830171;chr3R_25830304_25830403 0.00 0.36 0.00 0.68 1.19 0.00 0.00 0.32 0.00 0.00 0.00 0.46 0.00 0.97 0.85 0.00 0.00 0.47 0.00 0.44 0.00 1.46 0.00 0.00 0.00 0.00 1.72 3.09 0.57 1.19 0.56 0.00 0.00 0.00 0.45 0.00 0.27 0.00 0.89 0.58 0.00 0.69 0.00 0.00 1.06 0.27 0.00 0.00 0.00 0.00 0.57 0.00 0.38 0.00 0.00 0.24 0.26 0.00 K jcn_only_AD Inos,I_chr2R_3344353_3345211 chr2R - chr2R_3342737_3342806 chr2R_3342737_3342802 chr2R_3342419_3342736;chr2R_3342807_3343274 0.48 0.49 0.74 0.86 1.27 0.57 0.48 0.71 0.48 0.23 0.85 0.13 0.72 0.64 0.48 0.32 0.41 0.83 0.72 0.35 0.69 0.59 0.54 0.33 1.09 0.81 0.30 0.44 0.69 0.13 0.75 0.56 0.60 0.31 0.48 0.14 0.65 0.48 0.20 0.46 0.47 0.61 0.70 0.47 0.45 0.64 0.44 0.58 0.37 0.39 1.02 0.52 0.00 0.20 1.13 0.43 0.27 0.48 K intron_retention CG14711,CG18764,CG14712 chr3R + chr3R_7449449_7449507 chr3R_7449448_7449449;chr3R_7449507_7449508 chr3R_7449323_7449448;chr3R_7449508_7450016 5.56 5.00 6.90 10.64 6.67 0.00 7.32 8.33 3.95 5.26 0.00 3.17 9.09 0.00 5.71 0.00 0.00 0.00 0.00 2.44 8.11 10.53 7.69 5.56 14.29 3.85 8.22 5.00 5.56 7.55 3.70 6.82 5.43 2.38 5.00 12.24 8.33 6.56 9.52 8.57 27.27 4.84 0.00 6.00 8.57 6.56 2.13 6.45 3.57 8.77 0.00 8.70 0.00 2.13 0.00 8.16 5.13 3.53 K intron_retention CG4747 chr2L + chr2L_10004572_10005423 chr2L_10004571_10004572;chr2L_10005423_10005424 chr2L_10004535_10004571;chr2L_10005424_10005506 0.00 5.56 0.00 1.57 0.00 0.00 0.00 2.33 0.00 0.00 3.03 1.71 3.12 3.12 0.98 1.77 0.00 0.00 0.00 2.21 0.00 4.00 0.00 0.00 6.52 1.33 2.33 0.00 6.52 2.13 0.00 0.00 2.08 2.68 0.00 0.00 1.33 2.00 4.29 1.30 2.13 1.59 3.28 0.00 0.00 0.00 0.00 4.35 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 K alternative_donor I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,cg,I_chr2R_10064197_10068715,I_chr2R_10068194_10068715 chr2R + chr2R_10065652_10065776;chr2R_10065709_10065776 chr2R_10065706_10065776 chr2R_10065777_10066101;chr2R_10065603_10065651 75.41 79.73 76.00 75.26 75.41 77.05 74.03 72.04 75.00 81.13 78.12 73.39 81.36 75.44 75.90 72.86 78.33 74.07 75.00 77.27 71.93 78.67 77.06 75.27 68.42 79.71 74.23 70.59 76.39 75.79 73.33 84.21 75.44 77.78 81.16 73.68 75.22 81.71 73.28 71.81 77.36 72.87 72.73 75.34 74.63 75.64 74.55 77.95 71.43 74.29 74.77 78.08 77.36 65.96 80.68 71.19 76.60 81.71 K intron_retention B52,F_chr3R_9488762_9491174,E_chr3R_9488770_9491174,RI_chr3R_9489655_9489713 chr3R + chr3R_9488774_9491174 chr3R_9488773_9488774;chr3R_9491174_9491175 chr3R_9488692_9488773;chr3R_9491175_9491248 2.92 2.69 2.49 5.88 2.11 2.92 3.03 4.23 2.50 3.53 4.22 3.14 3.95 3.66 3.00 2.74 3.18 2.07 3.55 2.39 2.65 1.93 4.45 4.24 4.81 1.62 3.28 2.51 1.16 1.72 3.58 2.16 1.55 3.39 3.86 2.70 3.21 3.39 3.53 2.92 1.94 3.08 2.84 4.73 0.78 2.46 2.78 1.32 4.23 2.50 3.40 3.29 2.48 2.24 3.02 2.20 2.99 1.66 K intron_retention CG31715,I_chr2L_10341933_10342151,I_chr2L_10341933_10342155 chr2L + chr2L_10341933_10342149 chr2L_10341932_10341933;chr2L_10342149_10342150 chr2L_10341833_10341932;chr2L_10342150_10342233 0.00 0.00 0.00 1.96 0.00 0.00 1.92 0.59 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention crq,I_chr2L_452737_452797 chr2L - chr2L_449321_449434 chr2L_449320_449321;chr2L_449434_449435 chr2L_449230_449320;chr2L_449435_450540 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette mys,I_chrX_7958795_7961094 chrX + chrX_7958795_7961094 chrX_7958795_7959480;chrX_7959566_7960130;chrX_7960216_7961094 chrX_7959481_7959565;chrX_7960131_7960215 chrX_7958695_7958794;chrX_7961095_7961194 6.25 NA NA NA NA NA 0.00 NA 5.88 NA NA NA NA 10.00 NA NA NA 7.69 NA 12.50 NA 4.88 6.67 5.26 NA NA 6.25 NA NA 9.09 17.65 NA NA 7.69 NA NA 4.76 NA 3.85 5.56 NA 5.26 NA 6.67 NA NA NA NA 5.56 3.85 6.25 8.33 NA NA 6.25 NA NA NA K intron_retention CG7375 chr3L - chr3L_8189984_8190241 chr3L_8189983_8189984;chr3L_8190241_8190242 chr3L_8189633_8189983;chr3L_8190242_8190543 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Gbeta13F,I_chrX_15754284_15755167,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15754284_15755172;chrX_15754284_15755148;chrX_15754284_15755021;chrX_15754284_15755184;chrX_15754284_15755409;chrX_15754284_15754777;chrX_15754284_15755416;chrX_15754284_15755268 chrX_15754284_15755256 chrX_15754256_15754283 1.75 0.85 1.53 1.38 4.08 2.65 2.81 1.65 1.78 1.49 0.00 2.41 1.61 2.67 0.00 2.65 0.00 1.08 0.65 1.37 1.16 2.67 2.37 2.70 3.06 2.50 0.79 1.69 0.00 4.00 1.69 1.75 2.44 1.54 0.88 3.70 1.01 1.09 2.17 0.00 4.05 0.93 2.34 3.01 5.13 3.48 4.00 0.00 1.66 1.79 0.71 0.68 1.75 2.38 1.29 4.08 2.54 2.47 K cassette NaCP60E,REI_chr2R_20803355_20804842,I_chr2R_20805053_20805170 chr2R + chr2R_20802986_20804842 chr2R_20802986_20804294;chr2R_20804414_20804842 chr2R_20804295_20804413 chr2R_20802804_20802985;chr2R_20804843_20804942 21.43 NA NA NA NA NA NA NA 21.05 NA NA 14.29 NA NA NA NA NA NA NA 25.00 NA NA 21.43 NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA 21.43 25.00 NA 5.56 NA NA NA NA NA 25.00 16.67 NA 23.08 NA NA NA NA NA NA NA N alternative_acceptor CrebA,I_chr3L_15541841_15542648 chr3L + chr3L_15543697_15544191 chr3L_15543697_15543963 chr3L_15543247_15543696;chr3L_15544192_15546314 28.26 21.05 30.00 32.14 NA 30.00 28.57 24.24 25.86 30.77 100.00 25.71 33.33 30.77 35.00 36.36 27.78 36.84 23.08 21.54 25.00 42.86 25.00 21.88 21.05 23.53 36.84 33.33 23.08 100.00 45.45 25.00 30.00 24.14 25.00 35.00 21.82 25.00 22.22 28.57 NA 28.26 26.32 40.00 21.43 26.67 25.00 100.00 30.30 25.00 17.24 30.77 17.86 100.00 100.00 30.77 20.00 45.00 K alternative_acceptor CG14712,CG10535,I_chr3R_7498847_7498975 chr3R + chr3R_7479961_7480016 chr3R_7479961_7480013 chr3R_7478578_7479960;chr3R_7480017_7480248 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 1.92 0.00 0.00 0.00 0.00 0.00 2.94 2.70 0.00 0.00 2.70 3.51 0.00 1.30 1.89 0.00 0.00 0.00 2.70 5.71 1.85 0.00 1.96 0.00 1.32 2.08 0.00 0.00 0.00 0.00 2.56 1.56 1.82 1.72 3.57 0.00 1.72 0.00 3.57 1.92 1.72 3.64 1.72 0.00 0.00 4.35 0.00 0.00 1.64 3.49 K intron_retention Neu3,F_chr3R_10498229_10498337 chr3R - chr3R_10496565_10497093 chr3R_10496564_10496565;chr3R_10497093_10497094 chr3R_10496222_10496564;chr3R_10497094_10497245 0.00 1.26 0.95 0.00 0.00 0.00 0.00 0.68 1.98 0.00 0.00 1.14 2.90 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 1.67 0.55 0.00 0.00 0.84 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.58 0.00 0.00 0.00 1.94 0.00 0.00 0.00 K alternative_acceptor SNF4Agamma,I_chr3R_16982134_16982890 chr3R + chr3R_16982134_16983336;chr3R_16982134_16983164;chr3R_16982134_16983218;chr3R_16982134_16983159 chr3R_16982134_16982890 chr3R_16982126_16982133;chr3R_16983337_16983376 14.29 11.76 10.53 12.00 16.67 13.33 27.78 12.50 13.04 22.22 10.00 13.16 15.00 16.67 10.53 15.62 18.75 14.29 14.29 7.14 15.38 16.67 15.79 14.29 26.67 14.29 16.67 14.29 16.67 18.18 11.54 28.57 12.50 12.82 12.50 15.38 22.22 25.00 14.29 18.18 9.09 12.50 7.14 14.29 16.67 6.25 12.50 13.04 14.89 0.00 29.41 30.77 11.11 20.00 7.14 11.11 12.50 14.29 K jcn_only_AD CG4502,I_chr2L_7196721_7196787,I_chr2L_7196858_7204207 chr2L - chr2L_7196858_7203938;chr2L_7196858_7203942 chr2L_7196858_7203934 chr2L_7196788_7196857;chr2L_7203943_7204239 33.33 29.17 31.11 26.79 25.00 28.21 38.81 33.33 30.00 NA 23.81 36.36 20.00 34.88 34.04 29.82 25.00 44.12 37.21 37.29 34.62 NA 34.04 41.38 NA 41.38 20.00 NA 43.33 35.14 27.03 40.91 32.50 33.33 31.58 34.29 NA NA 47.83 15.00 29.03 23.19 39.02 33.33 NA 25.49 35.00 34.29 43.33 34.78 21.88 32.14 NA NA 24.56 42.86 NA 45.45 K jcn_only_AA RhoGAP19D,EI_chrX_20347839_20348139,DMG4-MB6.chrX.37.001,RI_chrX_20380495_20381649 chrX - chrX_20347836_20348139 chrX_20347839_20348139 chrX_20348140_20348214;chrX_20347739_20347835 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention gfzf,MB8.chr3R.pasa.66 chr3R - chr3R_2975355_2975887 chr3R_2975354_2975355;chr3R_2975887_2975888 chr3R_2973400_2975354;chr3R_2975888_2976217 6.67 3.70 10.81 3.70 8.33 8.33 7.69 10.00 4.00 0.00 5.00 7.50 0.00 8.33 5.56 12.50 6.25 4.88 5.71 9.09 3.85 4.00 5.71 5.77 5.00 13.79 7.81 11.76 9.38 4.76 8.11 11.76 6.25 8.89 6.25 7.32 4.59 5.66 4.00 6.67 NA 7.58 6.90 0.00 13.64 15.00 5.41 14.29 4.84 10.53 5.17 7.14 8.70 6.67 6.06 6.90 7.14 NA K intron_retention pcm chrX - chrX_19381746_19381824 chrX_19381745_19381746;chrX_19381824_19381825 chrX_19381165_19381745;chrX_19381825_19382718 0.00 8.33 0.00 5.88 0.00 0.00 6.67 10.71 3.45 NA NA 2.63 NA 0.00 0.00 0.00 NA 0.00 NA 2.70 6.67 50.00 0.00 0.00 7.69 NA 0.00 NA 10.71 0.00 0.00 0.00 5.00 0.00 0.00 0.00 10.81 0.00 5.00 4.65 0.00 6.25 NA 0.00 0.00 3.12 3.70 0.00 0.00 0.00 2.63 0.00 4.00 3.45 4.35 0.00 0.00 0.00 K intron_retention RI_chrX_7172561_7252693,CG1677,I_chrX_7178792_7252693,RI_chrX_7179818_7179946 chrX - chrX_7178792_7179946 chrX_7178791_7178792;chrX_7179946_7179947 chrX_7178692_7178791;chrX_7179947_7180046 8.16 6.38 5.26 13.16 9.52 0.00 13.56 10.20 11.70 0.00 7.69 10.53 17.14 23.08 8.62 6.82 9.38 15.00 7.69 9.33 10.53 5.41 5.41 4.29 5.71 8.33 5.80 9.68 4.76 6.78 10.00 NA 3.45 13.64 5.13 4.76 3.12 2.82 8.33 12.50 5.88 12.35 16.67 10.20 3.57 7.89 7.14 9.52 11.90 4.00 9.59 8.89 0.00 0.00 11.11 8.33 2.00 8.00 K intron_retention Graf,RI_chrX_15652351_15654288,RI_chrX_15652363_15654157,RI_chrX_15652363_15654499,RI_chrX_15654228_15654288 chrX - chrX_15649320_15649379 chrX_15649319_15649320;chrX_15649379_15649380 chrX_15649252_15649319;chrX_15649380_15649595 8.99 7.41 3.03 1.64 13.79 12.20 12.86 2.70 5.71 4.76 0.00 3.77 8.89 9.30 0.00 5.26 6.98 5.13 6.82 0.00 8.70 10.34 15.15 8.82 25.00 29.41 16.13 0.00 46.15 9.09 12.07 NA 0.00 4.29 12.50 13.64 14.29 9.52 9.09 5.88 20.00 9.38 12.50 16.67 14.29 0.00 NA 6.67 10.00 0.00 16.67 10.00 0.00 NA 6.12 15.79 20.83 0.00 K intron_retention bif,I_chrX_11581793_11583233 chrX + chrX_11587211_11587579 chrX_11587210_11587211;chrX_11587579_11587580 chrX_11587144_11587210;chrX_11587580_11588761 20.71 NA NA NA NA NA 21.43 NA 30.00 NA NA NA 0.00 NA NA NA NA NA NA 30.77 NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 19.05 NA NA NA NA NA 25.00 20.00 NA 25.00 NA NA NA NA NA NA 14.29 NA NA K alternative_acceptor Rbp1-like,R_chrX_13277657_13278332 chrX - chrX_13275077_13278332 chrX_13277657_13278332 chrX_13278333_13278432;chrX_13274199_13275076 59.26 48.65 70.83 97.62 41.18 58.33 87.88 86.05 84.38 66.67 91.67 83.33 90.91 88.00 82.14 91.18 94.74 66.67 100.00 63.86 63.16 42.86 39.71 36.96 48.15 75.00 58.82 35.42 64.00 72.97 80.00 38.64 36.00 76.00 40.54 30.16 60.61 32.50 35.85 55.00 30.23 73.08 78.26 76.47 26.32 48.33 34.00 32.04 67.65 46.15 56.76 55.00 57.58 33.33 82.14 39.02 59.26 44.93 K intron_retention CG4822,I_chr2L_120081_120199,I_chr2L_120266_120420,I_chr2L_125267_128799,RI_chr2L_126228_126309 chr2L - chr2L_120266_120420 chr2L_120265_120266;chr2L_120420_120421 chr2L_120225_120265;chr2L_120421_120430 78.56 75.00 78.95 71.43 85.71 85.71 91.89 80.43 78.33 NA 75.00 82.22 93.33 75.00 82.14 82.35 76.47 82.35 78.79 94.74 72.73 65.52 79.31 76.92 85.19 88.89 87.50 76.47 66.67 67.86 66.67 69.23 55.56 79.25 77.78 81.48 71.43 85.71 73.33 80.56 58.82 79.59 76.19 66.67 NA 76.67 92.31 82.14 76.00 76.92 78.79 66.67 NA 87.50 86.21 58.82 68.42 85.71 K jcn_only_AA wge chr3R - chr3R_18542354_18542655;chr3R_18542390_18542655 chr3R_18542387_18542655 chr3R_18542656_18542685;chr3R_18540256_18542353 32.52 30.61 33.33 47.06 35.00 NA 65.00 29.17 25.86 30.00 NA 50.00 NA NA 20.00 NA NA NA NA 28.57 NA 44.33 23.44 28.38 35.29 59.09 36.11 36.67 53.23 45.28 31.71 22.86 30.33 22.86 20.51 69.23 37.04 26.00 21.54 37.00 47.37 22.00 NA 34.69 28.00 34.48 13.04 42.86 19.05 50.00 40.91 70.00 21.62 NA 20.83 58.33 16.22 21.05 K intron_retention Hmu chr3R + chr3R_23115043_23115101 chr3R_23115042_23115043;chr3R_23115101_23115102 chr3R_23114837_23115042;chr3R_23115102_23115402 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.16 0.00 0.00 0.00 0.00 0.00 0.41 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Pms2,I_chr2R_11257708_11257764 chr2R - chr2R_11255877_11255990 chr2R_11255939_11255990 chr2R_11255991_11256244;chr2R_11255577_11255876 100.00 100.00 100.00 95.45 100.00 100.00 86.96 94.74 95.65 NA 100.00 85.00 100.00 100.00 100.00 100.00 90.91 100.00 91.67 97.06 100.00 88.89 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 93.75 100.00 92.31 100.00 100.00 85.71 100.00 83.33 93.33 96.15 100.00 95.83 100.00 100.00 100.00 93.33 92.86 88.24 96.00 93.33 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 K multi_cassette Ppn,F_chr3R_24347009_24347078 chr3R - chr3R_24348983_24351592 chr3R_24348983_24349248;chr3R_24349420_24349755;chr3R_24349940_24349995;chr3R_24351030_24351592 chr3R_24349249_24349419;chr3R_24349756_24349939;chr3R_24349996_24351029 chr3R_24348417_24348982;chr3R_24351593_24351772 100.00 NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA NA 50.00 NA NA 66.67 NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA N alternative_donor I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545799_17545850;chr2R_17545767_17545850;chr2R_17545781_17545850;chr2R_17545686_17545850;chr2R_17545690_17545850 chr2R_17545615_17545850 chr2R_17545851_17545985;chr2R_17545613_17545614 65.38 71.43 86.36 80.70 90.74 88.89 71.15 87.88 84.91 20.00 81.58 85.07 88.57 83.33 89.86 69.23 88.64 81.40 89.58 87.78 84.62 50.00 0.00 9.09 30.00 83.33 23.08 20.00 34.62 25.00 84.44 65.38 64.00 86.76 55.56 27.27 39.13 43.75 36.84 30.43 47.06 86.89 85.71 35.00 74.14 41.67 45.00 38.89 84.51 28.57 28.57 27.27 80.00 11.11 87.69 31.82 46.67 53.57 K intron_retention MB8.chr3R.pasa.66,CG1091,I_chr3R_2909743_2909904,I_chr3R_2910029_2910096,RI_chr3R_2910490_2910686,RI_chr3R_2911041_2911135,RI_chr3R_2946518_2946663 chr3R - chr3R_2909847_2909904 chr3R_2909846_2909847;chr3R_2909904_2909905 chr3R_2909729_2909846;chr3R_2909905_2910004 9.45 5.71 6.67 23.53 12.50 NA 8.00 7.81 14.63 9.52 11.54 13.33 17.86 0.00 20.59 16.33 12.00 11.11 9.68 12.50 8.33 13.64 15.15 7.69 0.00 12.50 38.89 33.33 18.18 6.98 20.41 8.82 8.00 10.77 0.00 23.33 9.38 4.55 6.56 7.81 13.89 15.00 12.50 3.45 2.00 5.56 5.56 3.45 6.67 11.43 15.52 5.71 7.14 16.98 3.03 4.92 2.67 2.04 K intron_retention pds5,I_chr2R_7922306_7922992 chr2R + chr2R_7916879_7916936 chr2R_7916878_7916879;chr2R_7916936_7916937 chr2R_7916671_7916878;chr2R_7916937_7917105 2.00 0.00 4.26 7.69 2.94 0.00 5.71 0.00 4.27 0.00 0.00 5.06 2.38 0.00 2.00 7.25 3.64 0.00 0.00 4.40 2.94 0.00 5.26 2.94 7.69 12.20 10.17 6.25 11.11 0.00 8.77 0.00 3.23 1.75 10.34 0.00 0.00 0.00 4.44 0.00 NA 2.94 5.41 1.82 NA 0.00 0.00 0.00 6.49 0.00 3.39 0.00 NA 0.00 1.92 0.00 0.00 NA K alternative_donor Dystrophin,noncoding_17759,I_chr3R_15289404_15290179 chr3R + chr3R_15289362_15290221;chr3R_15289404_15290221 chr3R_15289437_15290221 chr3R_15290222_15290279;chr3R_15289350_15289361 31.01 NA 25.00 30.77 NA NA 55.56 31.25 31.25 NA NA 23.08 20.00 37.50 50.00 33.33 37.50 NA 44.44 23.08 NA NA 22.22 NA NA 33.33 NA NA NA 20.00 36.36 NA 25.00 30.00 NA 0.00 16.67 NA NA 40.00 NA 38.46 33.33 16.67 NA NA NA 28.57 33.33 NA NA NA NA NA 20.00 NA NA NA K alternative_acceptor fdl,RI_chr2R_8394261_8394315 chr2R - chr2R_8378211_8394315 chr2R_8394261_8394315 chr2R_8394316_8394415;chr2R_8378028_8378210 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG17224,RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605 chr2L - chr2L_3018025_3018163;chr2L_3018082_3018163;chr2L_3018038_3018163 chr2L_3018018_3018163 chr2L_3018164_3018185;chr2L_3017982_3018017 3.33 NA NA 3.70 NA 0.00 2.94 2.27 3.77 NA NA 0.00 NA 4.76 NA 2.04 NA NA NA 4.55 NA 3.33 NA NA NA NA NA NA NA NA 0.00 4.00 NA 0.00 NA NA NA NA NA 6.38 4.00 7.14 NA 2.86 4.17 2.56 NA 2.50 0.00 NA NA NA NA NA 4.76 NA NA 9.09 N jcn_only_AD None chrU - chrU_4028377_4028681 chrU_4028377_4028479 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 89.43 100.00 K intron_retention Karl,I_chrX_11687161_11687475,I_chrX_11689220_11690898 chrX + chrX_11685218_11685390 chrX_11685217_11685218;chrX_11685390_11685391 chrX_11685137_11685217;chrX_11685391_11685480 0.35 0.29 0.00 0.31 0.42 0.58 0.61 0.43 0.21 0.42 0.22 0.29 0.91 0.80 0.10 0.52 0.23 0.37 0.32 0.21 0.48 0.56 0.36 0.43 0.00 0.12 0.61 0.33 0.57 0.26 0.19 0.58 0.32 0.44 0.00 0.17 0.31 0.22 0.19 0.42 0.38 0.38 0.30 0.18 0.35 0.71 0.56 0.50 0.45 0.41 0.35 0.31 0.24 0.59 0.25 0.21 0.18 0.45 K intron_retention I_chrX_1757755_1757801,CG14817,I_chrX_1770939_1771001,RI_chrX_1770945_1771037,RI_chrX_1773382_1773444,trr,I_chrX_1793073_1794406,RI_chrX_1795648_1795745 chrX - chrX_1770939_1771001 chrX_1770938_1770939;chrX_1771001_1771002 chrX_1770845_1770938;chrX_1771002_1771101 92.59 81.82 NA 90.00 NA NA NA 88.89 NA NA NA 100.00 NA NA NA NA NA NA NA 92.86 NA NA 90.00 90.91 NA NA 92.31 88.89 95.83 NA NA NA NA NA 87.50 NA 100.00 NA 94.44 90.91 NA NA NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA 91.67 100.00 NA 100.00 83.33 NA K jcn_only_AA Nmnat chr3R + chr3R_20772018_20772197;chr3R_20772018_20772605 chr3R_20772018_20772675 chr3R_20771916_20772017;chr3R_20772676_20772744 0.00 NA NA NA NA NA 4.55 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA 4.00 NA 0.00 0.00 NA NA NA 0.00 NA 0.00 NA 9.09 0.00 NA 3.33 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA 3.23 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 3.70 0.00 NA 0.00 0.00 7.14 K intron_retention RpS16,RI_chr2R_18493796_18494013,I_chr2R_18494146_18494441 chr2R + chr2R_18493794_18494013 chr2R_18493793_18493794;chr2R_18494013_18494014 chr2R_18493752_18493793;chr2R_18494014_18494064 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 K jcn_only_AD CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908142_9908424,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907784_9908424;chr2L_9907784_9908307;chr2L_9907784_9908405 chr2L_9907784_9908531 chr2L_9907756_9907783;chr2L_9908532_9908619 14.62 11.67 12.77 8.89 18.42 17.86 19.40 7.41 19.63 NA 14.71 14.00 21.74 17.19 10.42 7.07 10.61 12.31 7.41 18.66 12.82 31.30 13.27 16.22 11.32 8.93 19.57 11.76 21.43 18.31 25.93 6.67 11.27 10.83 20.90 20.41 23.75 14.52 13.04 15.69 14.29 9.68 9.76 22.35 23.33 19.05 30.91 25.00 9.09 18.52 11.83 12.00 21.57 20.00 13.41 16.33 11.43 16.00 K intron_retention Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19562143_19562326 chr2R_19562142_19562143;chr2R_19562326_19562327 chr2R_19561937_19562142;chr2R_19562327_19562386 5.88 2.94 5.36 4.41 6.31 6.67 6.56 5.62 5.53 5.26 7.25 4.83 6.67 5.68 7.14 3.23 3.70 5.75 8.57 3.68 7.41 34.76 8.15 10.34 7.94 3.77 17.82 5.26 14.29 7.00 8.28 4.55 3.92 5.00 9.86 5.81 6.72 8.70 7.87 4.13 12.31 5.76 7.46 3.28 3.67 5.88 8.70 6.45 5.00 7.55 8.27 5.66 2.35 7.69 7.21 5.80 5.00 3.49 K intron_retention CG5792,F_chr2L_12714547_12714695 chr2L - chr2L_12713376_12713442 chr2L_12713375_12713376;chr2L_12713442_12713443 chr2L_12713375_12713375;chr2L_12713443_12713586 6.67 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA 26.67 NA NA 8.70 6.67 NA NA NA NA 23.08 NA NA NA NA NA NA 33.33 NA NA 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA 31.25 NA K intron_retention CG3061 chr3R + chr3R_9860199_9860421 chr3R_9860198_9860199;chr3R_9860421_9860422 chr3R_9860102_9860198;chr3R_9860422_9860765 100.00 100.00 97.83 98.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 97.96 100.00 100.00 100.00 100.00 98.90 96.67 100.00 100.00 100.00 100.00 98.04 97.30 100.00 100.00 96.88 100.00 100.00 100.00 98.68 96.67 96.67 100.00 100.00 97.37 100.00 98.31 98.90 97.67 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.44 98.44 K intron_retention Dscam,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3252988_3255892 chr2R_3252987_3252988;chr2R_3255892_3255893 chr2R_3252840_3252987;chr2R_3255893_3255920 52.78 NA NA 81.82 NA NA NA NA 41.18 NA NA NA NA NA NA NA NA NA NA 78.26 NA 76.92 NA NA NA NA 55.56 NA NA 63.64 NA NA NA 50.00 NA NA 40.00 NA 26.32 38.46 NA 61.54 NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD Osbp chr3R - chr3R_20761871_20761986 chr3R_20761871_20761976 chr3R_20760591_20761870;chr3R_20761987_20763959 100.00 100.00 100.00 100.00 100.00 100.00 98.73 100.00 100.00 100.00 100.00 99.17 100.00 100.00 100.00 100.00 98.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.61 100.00 100.00 K cassette CG11299,noncoding_8970,I_chr2R_19619053_19619186 chr2R + chr2R_19602423_19616571;chr2R_19601642_19616571 chr2R_19602423_19609732,chr2R_19601642_19609732;chr2R_19610399_19616571 chr2R_19609733_19610398 chr2R_19601628_19601641;chr2R_19616572_19616757 98.84 98.04 100.00 93.75 89.74 97.44 100.00 100.00 99.08 94.44 100.00 97.22 100.00 97.92 100.00 98.63 100.00 100.00 98.04 99.17 96.55 94.44 100.00 100.00 95.65 94.74 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 96.67 96.55 100.00 100.00 98.18 97.14 95.24 98.84 100.00 100.00 100.00 100.00 97.06 97.62 98.89 98.31 100.00 96.97 97.67 97.30 98.08 100.00 98.00 97.96 K jcn_only_AD noncoding_7780,CG30120,CG5189 chr2R + chr2R_14333622_14334268 chr2R_14334211_14334268 chr2R_14334269_14334314;chr2R_14333569_14333621 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA NA NA NA 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor kis,RI_chr2L_242745_242800,I_chr2L_242926_250756 chr2L - chr2L_242745_250756 chr2L_242745_242800 chr2L_242645_242744;chr2L_250757_250774 6.67 6.67 3.33 3.45 0.00 7.69 5.88 3.03 3.57 8.33 7.69 4.00 4.17 4.76 4.76 1.75 6.25 5.26 3.45 2.86 7.14 13.33 4.17 16.67 7.14 5.00 11.11 28.57 22.22 9.09 4.55 20.00 6.90 2.44 11.11 8.33 5.88 11.11 8.33 8.00 25.00 4.88 5.88 7.69 25.00 20.00 33.33 6.25 4.44 33.33 9.09 6.67 0.00 0.00 3.45 20.00 50.00 12.50 K intron_retention CalpA chr2R + chr2R_15316050_15316741 chr2R_15316049_15316050;chr2R_15316741_15316742 chr2R_15315931_15316049;chr2R_15316742_15316784 5.56 7.50 6.35 9.46 7.41 5.56 12.79 5.77 9.18 5.56 5.88 9.88 12.50 4.44 3.28 7.53 6.25 6.52 6.56 5.65 3.70 2.56 7.04 3.12 9.52 5.77 6.56 0.00 5.56 0.00 5.26 4.00 1.71 6.17 3.92 8.16 5.13 0.00 3.77 1.01 8.06 6.67 4.88 5.56 2.82 4.42 4.17 1.98 6.93 8.89 6.94 0.00 0.00 5.00 5.45 4.44 9.52 1.68 K alternative_donor E_chr4_592469_594231,Ephrin,I_chr4_595055_597604,RI_chr4_596272_596341 chr4 + chr4_592737_594238;chr4_592490_594238;chr4_592593_594238;chr4_592469_594238;chr4_592410_594238;chr4_592798_594238 chr4_592646_594238 chr4_594239_594331;chr4_592404_592409 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 4.55 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention Tif-IA chr2L + chr2L_22250315_22250432 chr2L_22250314_22250315;chr2L_22250432_22250433 chr2L_22250120_22250314;chr2L_22250433_22250483 91.11 96.67 95.00 97.59 89.74 97.22 98.67 88.24 96.04 100.00 84.85 89.71 97.67 90.00 91.11 88.89 91.30 83.33 94.83 91.04 93.10 95.45 90.00 88.57 90.48 89.47 74.55 76.47 78.95 86.96 78.95 94.12 88.89 91.40 86.67 72.73 96.43 87.50 90.48 94.29 100.00 92.77 85.42 95.12 84.21 95.83 84.21 100.00 91.00 95.00 92.11 96.77 88.89 83.33 91.30 94.44 92.00 91.67 K intron_retention I_chr2R_7778750_7781059,I_chr2R_7778971_7781059,Ef1alpha48D,I_chr2R_7779690_7780997,I_chr2R_7779690_7781065,I_chr2R_7779690_7783075,I_chr2R_7779719_7781059,I_chr2R_7779813_7781059,I_chr2R_7779892_7781059,EF_chr2R_7779896_7781065,I_chr2R_7780542_7781059,I_chr2R_7780580_7781059,snoRNA:Me28S-A1322,I_chr2R_7780840_7781059,I_chr2R_7780877_7781059,RI_chr2R_7781135_7783075 chr2R + chr2R_7780580_7781059 chr2R_7780579_7780580;chr2R_7781059_7781060 chr2R_7780480_7780579;chr2R_7781060_7781097 100.00 100.00 92.86 100.00 NA 88.89 100.00 94.44 97.06 100.00 100.00 95.24 100.00 100.00 100.00 95.00 100.00 NA 100.00 97.50 100.00 96.30 100.00 95.24 100.00 100.00 100.00 99.36 100.00 100.00 NA 100.00 100.00 94.74 93.33 100.00 96.97 100.00 100.00 96.77 NA 100.00 100.00 100.00 100.00 100.00 96.43 100.00 96.88 100.00 100.00 100.00 100.00 100.00 93.75 100.00 96.67 100.00 K alternative_donor CG8111 chr3L - chr3L_7907098_7907160 chr3L_7907098_7907158 chr3L_7906760_7907097;chr3L_7907161_7907751 97.22 100.00 100.00 95.24 100.00 100.00 100.00 95.00 97.22 95.24 94.12 96.97 100.00 92.86 94.44 100.00 92.86 100.00 93.33 95.74 100.00 97.30 97.73 100.00 95.45 92.86 100.00 100.00 91.89 100.00 93.33 100.00 97.22 96.00 95.24 100.00 98.04 100.00 95.35 97.96 96.97 100.00 100.00 97.44 97.37 100.00 96.30 96.97 95.45 96.97 93.02 100.00 92.00 97.62 94.12 97.37 96.67 95.24 K jcn_only_AD Rga,Spec2 chr3R - chr3R_1434742_1435371 chr3R_1434742_1435353 chr3R_1434172_1434741;chr3R_1435372_1435603 79.35 74.31 76.24 83.54 87.67 72.94 79.35 86.24 83.75 68.29 66.67 79.87 86.44 76.12 70.83 80.20 78.72 80.00 77.61 77.91 86.11 77.02 80.23 78.21 70.13 86.59 77.78 86.87 82.58 82.80 83.65 83.33 69.23 81.90 82.20 80.60 74.71 79.17 80.79 57.28 79.62 75.76 67.53 75.00 75.00 80.50 74.18 75.00 82.28 85.14 84.14 81.69 80.79 78.75 80.91 76.88 79.14 72.14 K intron_retention CG11984,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4838984_4839037 chr3R_4838983_4838984;chr3R_4839037_4839038 chr3R_4838559_4838983;chr3R_4839038_4839214 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor Lag1,I_chrX_6152540_6152929,RI_chrX_6153758_6161036,I_chrX_6160907_6161036 chrX - chrX_6152540_6152682 chrX_6152584_6152682 chrX_6152683_6152827;chrX_6152440_6152539 0.32 0.20 0.78 0.22 0.26 0.00 0.19 0.37 0.29 0.00 0.00 0.61 0.32 0.77 0.25 0.73 0.32 0.00 0.59 0.28 0.22 0.00 0.15 0.00 0.67 1.89 0.83 0.58 0.36 0.00 0.27 0.00 0.45 0.53 0.39 0.66 0.48 0.18 0.50 0.45 0.67 0.28 0.78 0.39 0.00 0.49 0.36 0.00 0.46 0.35 0.37 0.27 0.00 0.45 0.24 0.55 0.28 0.00 N jcn_only_AD CG11151 chrX + chrX_13634528_13634710;chrX_13634146_13634710 chrX_13634652_13634710 chrX_13634711_13635156;chrX_13633982_13634145 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG30344,RI_chr2R_5033951_5034150,I_chr2R_5036518_5036570 chr2R + chr2R_5033478_5034150 chr2R_5033951_5034150 chr2R_5034151_5034250;chr2R_5033378_5033477 8.33 11.54 12.90 6.67 11.76 3.57 12.07 7.55 10.61 16.67 10.34 8.33 18.18 11.11 7.69 11.54 11.76 6.67 5.88 8.93 14.29 11.76 7.14 7.32 7.14 8.70 7.69 8.33 11.11 6.90 12.90 5.56 4.35 12.50 10.71 6.67 12.00 6.67 4.44 6.12 4.55 8.93 11.54 3.85 15.38 7.89 8.33 8.33 9.68 6.67 6.56 7.14 10.00 7.69 3.70 9.09 8.51 5.56 N jcn_only_AA CG18854,RI_chr2L_9789598_9789790,I_chr2L_9789694_9789790,REI_chr2L_9789718_9789790,I_chr2L_9790307_9790615,I_chr2L_9790310_9790556 chr2L - chr2L_9789740_9789790;chr2L_9789694_9789790;chr2L_9789718_9789790;chr2L_9789751_9789790;chr2L_9789598_9789790 chr2L_9789733_9789790 chr2L_9789791_9789832;chr2L_9789594_9789597 65.14 60.00 67.28 65.14 69.23 73.04 67.51 69.10 64.54 81.03 62.82 70.43 62.83 64.86 64.00 69.78 67.80 65.22 68.00 62.13 63.64 69.49 62.50 64.71 57.14 61.11 61.39 53.85 62.63 67.33 67.57 64.56 70.07 60.24 68.83 37.50 62.96 63.64 70.83 65.07 71.68 68.70 63.56 67.91 69.88 70.45 56.72 67.81 59.45 67.74 69.09 76.67 53.85 57.41 64.21 66.67 52.63 70.54 K intron_retention cl chr2L + chr2L_5520546_5520618 chr2L_5520545_5520546;chr2L_5520618_5520619 chr2L_5520305_5520545;chr2L_5520619_5520700 0.81 0.00 1.19 0.47 0.00 0.00 1.19 0.90 0.66 0.00 0.00 0.82 0.00 0.00 1.60 2.99 0.00 0.00 0.00 0.00 0.00 3.41 2.16 0.00 0.00 0.00 3.31 4.03 7.73 1.60 1.92 1.03 0.83 0.88 0.00 0.70 0.42 1.27 0.71 0.93 1.73 0.88 0.00 0.81 1.00 0.69 0.00 1.47 1.18 2.33 1.15 1.32 1.52 0.48 0.00 0.00 0.00 1.07 K intron_retention CG40351,CREFI_chr3LHet_606442_607073 chr3LHet + chr3LHet_595366_595419 chr3LHet_595365_595366;chr3LHet_595419_595420 chr3LHet_595212_595365;chr3LHet_595420_599027 0.00 NA 0.00 5.41 NA NA 4.44 0.00 6.82 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 3.23 NA 4.17 0.00 0.00 NA 8.70 NA 0.00 0.00 0.00 0.00 NA 0.00 2.70 0.00 NA NA NA NA NA NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K alternative_donor CG1354,I_chrX_9672972_9673084,I_chrX_9673026_9673084 chrX + chrX_9672947_9673084;chrX_9672972_9673084;chrX_9672967_9673084 chrX_9673026_9673084 chrX_9673085_9673184;chrX_9672926_9672946 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Hydr2,RI_chr2L_3164075_3164159 chr2L + chr2L_3167140_3167203 chr2L_3167139_3167140;chr2L_3167203_3167204 chr2L_3166970_3167139;chr2L_3167204_3167558 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 K intron_retention CG8026,I_chr2R_5074640_5074701 chr2R - chr2R_5075771_5076158 chr2R_5075770_5075771;chr2R_5076158_5076159 chr2R_5075625_5075770;chr2R_5076159_5076484 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 4.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CycE,I_chr2L_15729157_15729277,I_chr2L_15737965_15746454 chr2L - chr2L_15737965_15746454;chr2L_15737965_15747832 chr2L_15737965_15740771;chr2L_15740900_15747832,chr2L_15740900_15746454 chr2L_15740772_15740899 chr2L_15737865_15737964;chr2L_15747833_15748266 94.44 100.00 95.24 100.00 94.44 100.00 70.83 96.88 100.00 66.67 87.50 96.15 100.00 100.00 94.12 96.15 100.00 100.00 100.00 91.43 80.00 100.00 94.44 100.00 88.89 92.31 100.00 83.33 45.45 100.00 92.86 87.50 75.00 88.24 93.33 70.00 90.48 85.71 92.31 84.21 NA 95.12 100.00 93.33 45.45 100.00 100.00 81.25 97.62 100.00 95.00 81.82 88.89 100.00 100.00 100.00 85.71 72.73 K alternative_acceptor E(bx),I_chr3L_240127_240176,I_chr3L_246324_246699 chr3L - chr3L_240114_240176;chr3L_240111_240176;chr3L_240127_240176 chr3L_240117_240176 chr3L_240177_240276;chr3L_240027_240110 49.49 46.43 45.74 55.45 48.15 55.32 43.82 56.56 47.59 51.02 59.62 51.77 47.76 45.71 53.76 47.52 48.39 53.95 47.25 51.80 51.43 51.58 54.55 44.29 45.00 50.65 53.66 55.56 48.81 54.08 53.75 46.55 55.45 47.69 50.67 49.44 48.91 40.91 46.05 44.37 51.43 50.70 50.00 43.48 47.95 50.63 52.00 43.37 54.37 52.17 49.49 47.62 48.94 41.86 50.48 50.00 41.18 49.28 K jcn_only_AA SWAP,RI_chrX_936466_936762,I_chrX_936466_936835,RI_chrX_938935_938985,I_chrX_941459_982652 chrX + chrX_936466_936835;chrX_936466_936966 chrX_936466_936762 chrX_936366_936465;chrX_936967_937018 42.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 42.86 NA NA NA NA NA NA NA NA 30.00 NA NA NA NA NA NA NA 51.85 NA NA NA NA NA NA NA NA NA NA K intron_retention dorsal,RI_chr2L_17438018_17439189,FI_chr2L_17449369_17450215,noncoding_3500,RI_chr2L_17450002_17450219 chr2L - chr2L_17450002_17450219 chr2L_17450001_17450002;chr2L_17450219_17450220 chr2L_17449902_17450001;chr2L_17450220_17450306 88.56 NA NA 100.00 NA NA 76.47 100.00 90.91 NA NA 100.00 NA NA NA 88.24 NA NA 91.67 70.00 NA NA NA NA NA NA NA NA NA NA 80.00 NA 69.23 92.86 NA NA NA NA NA 90.91 70.00 90.91 NA 88.89 NA 56.25 NA 40.00 92.86 NA 63.64 NA NA NA NA NA NA 45.45 K intron_retention CG13624 chr3R - chr3R_20386230_20386288 chr3R_20386229_20386230;chr3R_20386288_20386289 chr3R_20386104_20386229;chr3R_20386289_20386544 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.64 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA K intron_retention CEI_chrX_17177009_17196871,CG5445,I_chrX_17196752_17196871,RI_chrX_17196772_17196871,I_chrX_17196820_17196875,I_chrX_17198393_17198730 chrX + chrX_17196617_17196871 chrX_17196616_17196617;chrX_17196871_17196872 chrX_17196596_17196616;chrX_17196872_17196971 94.28 90.91 90.91 92.31 NA NA 100.00 93.75 94.12 100.00 NA 100.00 NA NA 100.00 94.74 100.00 NA 91.67 100.00 NA 100.00 76.47 89.47 NA 100.00 100.00 93.33 94.12 100.00 91.67 NA NA 93.33 100.00 88.89 95.24 100.00 100.00 95.45 NA 94.44 100.00 90.00 NA 100.00 90.00 88.89 94.44 89.47 100.00 92.86 NA 88.89 100.00 93.33 90.00 91.67 N jcn_only_AD Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11837971_11838672;chr2R_11837971_11838662 chr2R_11837971_11838112 chr2R_11837919_11837970;chr2R_11838673_11838762 0.00 0.00 0.00 0.00 0.00 0.73 0.98 0.00 0.48 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention yellow-d,yellow-d2,eIF2B-delta chr2R + chr2R_19266806_19266859 chr2R_19266805_19266806;chr2R_19266859_19266860 chr2R_19265867_19266805;chr2R_19266860_19267609 67.35 NA NA NA NA NA NA NA 64.71 NA NA 70.00 NA NA NA NA NA NA NA 71.43 NA NA NA NA NA NA NA NA NA NA NA NA 77.78 NA NA NA NA NA NA NA NA 63.64 NA NA NA NA NA NA 91.67 NA 60.00 NA NA NA NA 60.00 NA NA K multi_cassette Nipped-B,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_615459_615937 chr2R_615459_615513;chr2R_615630_615684;chr2R_615857_615937 chr2R_615514_615629;chr2R_615685_615856 chr2R_615299_615458;chr2R_615938_615993 88.46 80.65 75.68 75.51 88.46 96.00 87.74 81.58 94.38 90.00 96.15 88.16 97.50 87.50 89.47 90.41 88.89 67.74 91.67 88.33 95.83 96.55 89.36 96.00 86.21 45.16 91.30 93.33 51.72 75.00 87.72 100.00 63.33 90.28 96.15 81.58 93.94 76.92 95.24 92.86 83.33 88.24 88.89 90.91 80.00 90.00 87.50 70.37 89.06 94.12 87.76 89.29 77.78 85.71 82.50 100.00 85.71 62.50 K alternative_donor dorsal,RI_chr2L_17438018_17439189,FI_chr2L_17449369_17450215,noncoding_3500,RI_chr2L_17450002_17450219 chr2L - chr2L_17449369_17450325;chr2L_17449369_17450219;chr2L_17449369_17450310;chr2L_17449369_17450215 chr2L_17449369_17449875 chr2L_17449296_17449368;chr2L_17450326_17450359 15.49 19.05 15.79 16.13 15.00 6.25 23.73 14.67 15.49 20.00 17.24 12.31 6.45 18.92 9.09 18.75 20.00 16.67 20.93 9.09 12.50 10.81 22.58 24.00 16.67 8.57 20.00 25.00 13.33 15.79 10.00 10.71 11.32 17.07 9.38 14.29 18.18 18.18 12.50 16.42 12.24 10.71 17.65 20.69 9.68 11.11 20.00 9.35 17.05 20.00 18.52 14.29 7.69 11.76 8.33 8.70 30.00 11.11 K alternative_acceptor CG16838,I_chr3L_16125390_16125510 chr3L + chr3L_16125390_16125588;chr3L_16125390_16125485 chr3L_16125390_16125639 chr3L_16125290_16125389;chr3L_16125640_16126338 38.89 18.18 25.00 28.00 38.46 33.33 23.81 16.67 33.33 54.55 50.00 32.14 23.08 33.33 31.58 28.57 30.00 41.18 38.89 38.89 46.15 52.94 44.44 33.33 25.00 30.77 33.33 30.00 53.85 47.06 33.33 50.00 50.00 37.04 46.15 33.33 40.00 45.45 40.00 56.76 41.67 41.38 40.00 40.00 50.00 55.00 37.50 57.14 29.41 14.29 40.00 50.00 63.64 44.44 37.50 20.00 60.00 67.57 K intron_retention upd3 chrX + chrX_18173917_18174018 chrX_18173916_18173917;chrX_18174018_18174019 chrX_18173480_18173916;chrX_18174019_18174216 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA 10.00 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA N jcn_only_AA Moca-cyp chr3R + chr3R_24167182_24167249;chr3R_24167182_24167906;chr3R_24167182_24167243;chr3R_24167182_24167260 chr3R_24167182_24167348 chr3R_24167094_24167181;chr3R_24167907_24167936 40.68 44.44 40.00 NA NA 30.00 NA 40.74 33.33 40.00 NA 40.00 NA NA 48.28 22.22 NA NA NA 23.21 NA 17.39 49.02 40.62 57.69 NA 57.78 54.17 52.63 21.05 78.20 18.00 8.45 22.58 46.51 43.59 50.98 40.62 52.00 45.76 46.81 40.62 NA 48.48 36.00 45.28 34.29 20.97 34.29 51.52 54.35 54.17 36.36 58.06 NA 52.50 32.26 22.89 K intron_retention exo84 chr3R - chr3R_21877640_21877695 chr3R_21877639_21877640;chr3R_21877695_21877696 chr3R_21877309_21877639;chr3R_21877696_21877851 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 2.13 0.00 0.00 0.00 1.20 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 K intron_retention CG3430,CG10399 chr2L + chr2L_6958288_6958345 chr2L_6958287_6958288;chr2L_6958345_6958346 chr2L_6957027_6958287;chr2L_6958346_6958589 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Trf2,I_chrX_8318346_8318408 chrX + chrX_8317609_8317760 chrX_8317703_8317760 chrX_8317761_8318068;chrX_8317217_8317608 100.00 NA NA NA NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD eIF5,noncoding_24049,EI_chrX_15885411_15885854,RI_chrX_15885416_15885611 chrX - chrX_15885416_15885611;chrX_15885416_15885925;chrX_15885416_15885854 chrX_15885416_15885783 chrX_15885316_15885415;chrX_15885926_15885954 0.00 NA 0.00 0.00 NA NA 0.00 0.00 11.11 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA 3.70 NA NA NA NA NA NA NA NA 4.00 K intron_retention MRP,F_chr2L_12727117_12736035 chr2L + chr2L_12730152_12737958 chr2L_12730151_12730152;chr2L_12737958_12737959 chr2L_12730084_12730151;chr2L_12737959_12738176 12.73 9.46 12.50 33.33 10.53 7.58 16.19 20.69 11.54 19.05 10.26 23.53 16.92 21.15 10.94 13.58 13.64 11.54 20.51 19.67 16.98 12.73 13.50 8.25 13.24 16.07 12.93 10.96 6.52 12.50 12.96 4.65 14.04 13.64 8.77 16.67 9.90 5.88 7.32 13.33 10.81 13.73 13.95 10.28 5.56 6.25 5.88 13.04 14.66 8.00 14.96 14.58 5.97 10.91 12.79 6.56 4.12 10.61 K jcn_only_AA CG2046 chr3R - chr3R_1619292_1619362 chr3R_1619299_1619362 chr3R_1619363_1619431;chr3R_1619233_1619291 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.30 98.31 100.00 100.00 100.00 100.00 100.00 98.82 100.00 100.00 100.00 100.00 100.00 100.00 98.80 100.00 100.00 99.07 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.54 100.00 100.00 100.00 100.00 100.00 98.63 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG8417,I_chr3R_5585448_5585511 chr3R + chr3R_5586201_5586253 chr3R_5586200_5586201;chr3R_5586253_5586254 chr3R_5585572_5586200;chr3R_5586254_5587619 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 1.39 7.41 0.00 0.00 0.00 0.00 7.32 1.92 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 2.50 7.69 5.71 7.14 0.00 8.51 0.00 1.92 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 1.82 0.00 4.55 3.70 2.56 0.00 0.00 8.70 0.00 0.00 5.13 0.00 7.46 N intron_retention JhI-21,I_chr2L_12055360_12055714 chr2L - chr2L_12053925_12054302 chr2L_12053924_12053925;chr2L_12054302_12054303 chr2L_12053657_12053924;chr2L_12054303_12054498 13.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 13.33 NA NA NA NA NA 18.18 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor Myb,RI_chrX_15752571_15753225 chrX - chrX_15751579_15751673;chrX_15751579_15751682;chrX_15751579_15751709 chrX_15751579_15751749 chrX_15749823_15751578;chrX_15751750_15751876 4.35 3.85 2.70 3.45 8.00 3.57 3.33 5.26 5.81 18.75 3.85 5.63 2.56 2.50 2.86 3.30 2.63 3.45 2.08 5.62 3.57 3.12 2.44 10.00 6.67 6.45 3.45 11.76 4.35 3.70 3.77 4.55 4.65 2.53 4.55 5.56 10.00 6.67 5.00 12.50 5.26 5.13 2.70 7.89 0.00 2.70 5.26 7.84 6.67 0.00 3.70 7.69 4.76 0.00 4.08 0.00 5.00 5.17 K intron_retention CG3793 chr2L + chr2L_15764622_15764782 chr2L_15764621_15764622;chr2L_15764782_15764783 chr2L_15764267_15764621;chr2L_15764783_15765208 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 10.87 0.00 0.00 0.00 0.00 3.23 5.88 0.00 3.45 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 5.26 5.13 0.00 0.00 K alternative_donor CG8312 chr3R + chr3R_5433697_5447240 chr3R_5433701_5447240 chr3R_5447241_5448139;chr3R_5433636_5433696 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA 4.35 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 10.53 NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA K intron_retention CG10674,CG10672 chr3L - chr3L_5129111_5129177 chr3L_5129110_5129111;chr3L_5129177_5129178 chr3L_5129019_5129110;chr3L_5129178_5129483 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.36 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG15073 chr2R + chr2R_14594434_14594602 chr2R_14594521_14594602 chr2R_14594603_14594797;chr2R_14594410_14594433 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA K jcn_only_AA Ssrp,I_chr2R_19695638_19696332,RI_chr2R_19699261_19699317 chr2R - chr2R_19694621_19694683 chr2R_19694624_19694683 chr2R_19694684_19696255;chr2R_19693854_19694620 96.51 94.05 98.72 95.38 95.35 96.77 98.31 94.71 95.31 96.49 98.95 97.08 97.53 97.59 97.35 96.12 93.90 94.68 95.73 96.14 95.18 96.35 98.31 98.21 100.00 96.06 96.70 95.31 98.41 97.46 95.45 98.25 92.62 96.89 100.00 96.23 96.60 97.30 98.57 95.65 97.35 95.19 99.00 96.00 97.98 95.11 99.07 97.07 95.60 95.79 97.89 96.05 96.04 96.51 98.37 96.15 96.35 96.51 K alternative_donor Nipped-B,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_616057_617208;chr2R_616057_616283;chr2R_616057_616318 chr2R_616057_616311 chr2R_615957_616056;chr2R_617209_617308 36.67 36.36 40.00 38.10 33.33 30.00 36.59 33.33 38.46 50.00 33.33 31.43 42.86 26.09 55.56 30.30 50.00 25.00 40.00 36.84 28.57 42.86 41.67 62.50 40.00 33.33 41.18 33.33 33.33 28.57 50.00 NA 37.50 41.38 55.56 23.08 44.44 40.00 50.00 33.33 NA 36.67 50.00 35.71 NA 33.33 0.00 44.44 41.38 20.00 31.58 30.77 0.00 NA 33.33 0.00 50.00 50.00 K intron_retention RI_chrX_1405134_1408515,CG32810 chrX + chrX_1408826_1408889 chrX_1408825_1408826;chrX_1408889_1408890 chrX_1408760_1408825;chrX_1408890_1409074 0.00 0.00 2.35 1.90 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 1.82 0.65 0.00 0.00 0.00 0.00 0.00 1.67 3.37 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 1.41 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 3.57 K jcn_only_AA CG11347,I_chr3L_4412551_4417819 chr3L + chr3L_4419664_4419739 chr3L_4419664_4419713 chr3L_4419429_4419663;chr3L_4419740_4420073 0.00 0.00 0.00 0.00 0.00 0.00 3.12 4.65 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 1.28 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 1.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7033,I_chrX_8985376_8985442 chrX + chrX_8985376_8985442 chrX_8985375_8985376;chrX_8985442_8985443 chrX_8985346_8985375;chrX_8985443_8985542 65.48 90.91 58.33 55.56 NA NA 37.04 78.95 51.72 NA 41.67 54.17 NA NA 69.23 66.67 60.00 41.67 41.18 61.29 76.92 NA 77.78 83.33 NA 53.33 93.75 92.86 77.78 NA NA 63.64 NA 59.09 NA 91.67 76.47 72.73 64.29 66.67 55.56 61.90 69.23 88.89 43.75 64.29 58.82 40.00 50.00 85.71 92.86 66.67 66.67 88.89 53.85 66.67 72.73 50.00 K intron_retention msn,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2556730_2556791 chr3L_2556729_2556730;chr3L_2556791_2556792 chr3L_2556172_2556729;chr3L_2556792_2556866 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.41 0.31 0.00 0.00 0.22 0.00 0.00 0.92 0.00 0.00 0.00 0.60 0.18 0.00 0.24 0.00 0.00 0.00 0.00 0.27 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Mef2,I_chr2R_5804418_5804961,I_chr2R_5806354_5806933,CREFI_chr2R_5809509_5845628,I_chr2R_5814375_5816404,RI_chr2R_5846889_5846948 chr2R - chr2R_5804397_5804961 chr2R_5804418_5804961 chr2R_5804962_5805036;chr2R_5804318_5804396 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 4.00 NA NA 0.00 NA NA NA NA NA NA NA NA 13.33 5.71 0.00 0.00 0.00 NA 4.35 NA 0.00 NA NA NA 0.00 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 K intron_retention RpS26 chr2L - chr2L_18443074_18443152 chr2L_18443073_18443074;chr2L_18443152_18443153 chr2L_18442505_18443073;chr2L_18443153_18443237 2.27 2.27 3.96 2.99 2.35 0.00 5.66 0.00 1.66 0.00 0.00 2.48 0.00 0.00 3.23 2.35 0.00 1.01 0.00 1.90 0.99 6.45 0.00 2.75 11.39 5.26 23.89 46.40 20.25 0.00 4.04 2.35 1.16 1.46 3.03 2.56 2.48 2.27 3.70 3.40 11.57 2.03 1.28 2.22 1.60 1.61 0.00 1.89 3.12 2.27 4.88 1.72 2.34 2.50 0.00 1.94 3.37 1.72 K cassette CG2246,I_chr3R_26421344_26425985,I_chr3R_26421349_26427017 chr3R - chr3R_26419572_26420539;chr3R_26419539_26420539 chr3R_26419572_26419834,chr3R_26419539_26419834;chr3R_26419892_26420539 chr3R_26419835_26419891 chr3R_26419427_26419538;chr3R_26420540_26420567 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 4.35 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_150069_150295 chr4_150068_150069;chr4_150295_150296 chr4_149969_150068;chr4_150296_150317 13.89 NA 25.00 20.00 0.00 NA 19.51 12.50 23.26 NA NA 12.50 25.00 30.77 NA 17.65 NA NA 11.11 4.76 NA NA NA NA NA NA NA NA NA NA 6.25 NA NA 13.89 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 17.65 NA NA NA NA NA 0.00 NA NA NA K intron_retention Dscam,F_chr2R_3219886_3228832,F_chr2R_3226043_3235353,F_chr2R_3227948_3235353,F_chr2R_3228738_3235353,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3233281_3235353 chr2R_3233280_3233281;chr2R_3235353_3235354 chr2R_3232990_3233280;chr2R_3235354_3235453 16.67 NA NA NA 6.67 NA 36.36 15.00 27.59 NA NA 36.36 NA 7.14 14.29 23.53 NA NA NA 15.38 NA NA NA 0.00 NA NA NA NA NA NA 16.67 NA NA 19.05 NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA 36.84 NA NA NA NA NA 12.50 NA NA NA K intron_retention G9a,I_chrX_145325_145634,I_chrX_145570_145634 chrX + chrX_145575_145634 chrX_145574_145575;chrX_145634_145635 chrX_145384_145574;chrX_145635_145734 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 NA 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 NA 4.00 0.00 0.00 NA 0.00 0.00 0.00 2.44 NA 7.14 NA 0.00 0.00 0.00 NA 0.00 3.12 0.00 0.00 4.76 0.00 0.00 0.00 0.00 NA 0.00 K intron_retention CoRest,I_chrX_19416977_19417035 chrX + chrX_19416603_19417035 chrX_19416602_19416603;chrX_19417035_19417036 chrX_19416503_19416602;chrX_19417036_19417135 71.43 60.00 77.78 84.21 76.47 77.78 93.33 76.47 75.61 50.00 81.82 58.82 69.23 80.00 72.73 64.00 63.64 76.19 83.33 79.66 87.50 69.23 75.00 62.07 73.33 78.95 72.00 NA 64.71 78.95 69.57 66.67 82.61 80.00 68.42 69.23 50.00 60.71 68.00 79.31 NA 71.43 68.75 63.64 71.43 91.67 52.94 80.00 77.50 75.00 64.00 61.54 57.89 63.16 69.57 52.38 57.14 76.47 K alternative_acceptor E(bx),I_chr3L_240127_240176,I_chr3L_246324_246699 chr3L - chr3L_240114_240176;chr3L_240117_240176;chr3L_240127_240176 chr3L_240111_240176 chr3L_240177_240276;chr3L_240027_240110 13.77 19.64 20.21 13.64 11.11 8.51 24.72 13.11 14.48 14.29 11.54 16.31 16.42 17.14 11.83 12.87 16.13 13.16 13.19 14.86 20.00 13.68 12.73 17.14 10.00 7.79 9.76 11.11 8.33 10.20 13.75 12.07 7.58 16.15 16.00 10.11 11.96 20.45 14.47 21.83 10.00 11.97 12.96 14.49 13.70 22.78 20.00 23.47 13.75 19.57 17.17 21.43 19.15 16.28 10.48 17.86 15.69 13.77 K alternative_acceptor CG4829,I_chrX_16717240_16717547 chrX + chrX_16717240_16717619;chrX_16717240_16717889 chrX_16717240_16717547 chrX_16717140_16717239;chrX_16717890_16718151 2.06 2.28 1.08 1.45 1.54 0.92 1.28 2.35 1.95 3.31 2.18 1.48 3.78 2.06 2.34 1.76 2.06 1.80 1.70 1.17 1.96 4.89 2.59 1.88 2.70 6.25 2.07 4.76 2.78 2.30 5.88 2.16 3.55 1.45 3.69 1.53 1.77 1.59 1.43 3.79 3.14 2.01 2.25 2.11 4.90 1.71 2.64 2.72 1.67 3.06 2.27 3.21 1.66 1.47 2.06 1.66 1.55 1.14 K intron_retention CG1516,I_chr2R_5743716_5743899,I_chr2R_5746990_5747874,RI_chr2R_5752988_5757801 chr2R - chr2R_5740711_5742015 chr2R_5740710_5740711;chr2R_5742015_5742016 chr2R_5740053_5740710;chr2R_5742016_5743525 40.00 14.29 40.00 NA 28.57 23.53 NA NA 40.00 30.77 NA 53.85 60.00 NA 50.00 54.55 NA 64.29 50.00 46.67 NA 15.62 NA 46.67 NA 26.67 53.33 NA 60.00 NA NA NA NA 58.33 30.77 NA 26.32 NA 35.29 50.00 NA 50.00 35.71 NA NA NA 38.89 NA 35.71 NA 25.00 NA NA 33.33 50.00 45.45 NA NA K jcn_only_AD CG18012 chr3R - chr3R_13635522_13635582 chr3R_13635522_13635579 chr3R_13635117_13635521;chr3R_13635583_13636140 99.77 100.00 100.00 100.00 98.95 99.50 99.15 100.00 99.75 100.00 100.00 100.00 100.00 100.00 99.55 99.44 98.69 100.00 100.00 99.52 100.00 99.32 99.48 100.00 100.00 99.33 99.50 100.00 100.00 99.22 100.00 99.21 99.28 100.00 98.39 98.65 99.04 100.00 99.42 100.00 98.39 99.77 99.43 99.52 100.00 99.51 99.15 100.00 98.78 100.00 99.42 100.00 100.00 100.00 99.54 100.00 99.62 100.00 K alternative_acceptor CG17684,I_chr2RHet_861982_862035 chr2RHet - chr2RHet_669934_738242 chr2RHet_737969_738242 chr2RHet_738243_738431;chr2RHet_669809_669933 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 K alternative_acceptor CG10898,I_chr3R_7384087_7384155 chr3R + chr3R_7384087_7384155 chr3R_7384087_7384147 chr3R_7384024_7384086;chr3R_7384156_7384215 100.00 NA 88.89 100.00 NA NA 100.00 87.50 100.00 NA NA 90.91 NA NA NA 87.50 NA NA 100.00 90.00 NA NA 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA 87.50 NA 100.00 NA NA NA NA NA NA 90.91 100.00 NA NA NA NA NA NA 87.50 NA K jcn_only_AD Nc73EF,I_chr3L_16950628_16951334,I_chr3L_16950952_16952198,I_chr3L_16951588_16952198,I_chr3L_16951626_16952198,I_chr3L_16952138_16952198,I_chr3L_16952985_16955434,I_chr3L_16953768_16954599 chr3L + chr3L_16948643_16952198 chr3L_16948692_16952198 chr3L_16952199_16952207;chr3L_16948635_16948642 19.28 25.93 19.51 23.73 NA 4.55 23.26 25.93 20.90 NA NA 8.14 21.21 20.83 19.05 16.67 19.05 NA 21.88 6.25 26.09 NA NA NA NA NA 60.00 NA NA NA 15.00 NA NA 13.24 NA NA 22.22 NA NA NA NA 12.99 14.81 NA NA NA NA NA 13.58 NA NA 28.57 NA NA 16.67 NA NA 18.18 K intron_retention CG17018,R_chr2L_22312023_22363414,CEI_chr2L_22325847_22356902 chr2L + chr2L_22312039_22363429 chr2L_22312038_22312039;chr2L_22363429_22363430 chr2L_22311933_22312038;chr2L_22363430_22363514 25.00 NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention slim,CG5189 chr2R + chr2R_14328938_14329008 chr2R_14328937_14328938;chr2R_14329008_14329009 chr2R_14328462_14328937;chr2R_14329009_14329818 96.83 100.00 96.67 100.00 95.45 96.15 100.00 98.72 97.47 94.12 95.45 98.25 96.97 97.06 100.00 98.51 100.00 100.00 97.83 98.11 96.30 100.00 96.43 95.83 95.24 97.30 97.14 95.65 100.00 89.47 97.56 93.75 96.30 94.12 95.24 87.50 88.89 94.44 96.15 96.77 100.00 96.83 96.55 96.00 84.62 96.00 100.00 95.45 96.92 100.00 96.77 96.00 100.00 100.00 100.00 100.00 100.00 95.00 K intron_retention CG4293,RI_chrX_423385_423664,I_chrX_423385_423676 chrX - chrX_423564_423664 chrX_423563_423564;chrX_423664_423665 chrX_423443_423563;chrX_423665_423764 37.50 20.00 NA 43.75 NA NA 60.00 31.25 40.00 NA NA 38.10 NA NA NA NA NA NA NA 25.00 NA NA 31.58 27.78 50.00 NA 56.25 33.33 NA NA NA NA NA NA NA 30.77 41.67 NA 21.74 NA NA 37.50 NA NA NA 41.67 NA NA 25.00 41.67 31.58 NA NA 41.67 NA 46.15 6.67 NA K alternative_last_exon Fmr1,I_chr3R_5934794_5935245,I_chr3R_5934801_5935537 chr3R - chr3R_5929470_5930010 chr3R_5929941_5930010 chr3R_5929395_5929469 chr3R_5929822_5929940 chr3R_5930011_5930518 1.08 1.92 0.00 0.00 1.25 1.22 1.27 1.68 0.46 0.00 0.00 1.40 9.86 1.35 1.04 1.19 2.82 2.30 2.41 1.07 1.23 0.00 0.00 1.34 2.35 1.12 0.79 0.85 7.29 0.00 0.00 2.00 0.62 1.63 0.97 0.89 1.08 0.78 0.63 0.90 1.15 0.59 1.47 0.93 4.21 2.11 1.05 1.39 1.32 2.13 0.69 0.00 0.00 2.47 0.83 0.00 1.19 1.04 K alternative_donor CG5466,CI_chr3R_16445355_16445583 chr3R + chr3R_16445351_16445583 chr3R_16445355_16445583 chr3R_16445584_16445683;chr3R_16445255_16445350 0.00 NA NA NA NA NA NA NA 6.25 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA 5.56 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA N jcn_only_AA Moca-cyp chr3R + chr3R_24167182_24167348;chr3R_24167182_24167249;chr3R_24167182_24167243;chr3R_24167182_24167260 chr3R_24167182_24167906 chr3R_24167094_24167181;chr3R_24167907_24167936 58.26 55.56 60.00 NA NA 70.00 NA 59.26 66.67 60.00 NA 60.00 NA NA 51.72 77.78 NA NA NA 76.79 NA 82.61 50.98 59.38 42.31 NA 42.22 45.83 47.37 78.95 7.52 82.00 91.55 77.42 53.49 56.41 49.02 59.38 48.00 54.24 53.19 59.38 NA 51.52 64.00 54.72 65.71 57.26 65.71 48.48 45.65 45.83 63.64 41.94 NA 47.50 67.74 65.06 K intron_retention SsRbeta chr3L + chr3L_16123384_16123605 chr3L_16123383_16123384;chr3L_16123605_16123606 chr3L_16123008_16123383;chr3L_16123606_16124086 0.00 0.00 0.00 2.50 0.00 0.00 0.63 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.71 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 1.00 0.32 0.00 0.00 0.00 0.00 0.00 K intron_retention Sym chr3R - chr3R_1567312_1567365 chr3R_1567311_1567312;chr3R_1567365_1567366 chr3R_1565316_1567311;chr3R_1567366_1567438 100.00 97.14 100.00 100.00 100.00 97.22 100.00 98.57 98.80 100.00 100.00 98.59 100.00 100.00 98.11 100.00 100.00 97.06 97.37 98.81 100.00 100.00 100.00 100.00 96.77 97.44 100.00 100.00 100.00 96.97 100.00 100.00 98.36 96.55 97.14 100.00 100.00 100.00 100.00 98.41 96.30 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 K alternative_last_exon CG11790 chr3R + chr3R_20874513_20874993 chr3R_20874513_20874600 chr3R_20874994_20875668 chr3R_20874601_20874669 chr3R_20874387_20874512 0.00 0.00 0.00 0.00 0.00 0.00 3.45 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3446,I_chrX_6244272_6244321 chrX - chrX_6244272_6244325 chrX_6244271_6244272;chrX_6244325_6244326 chrX_6244172_6244271;chrX_6244326_6244397 1.23 0.00 0.00 1.65 0.00 0.00 2.42 0.72 1.14 0.00 2.70 2.92 0.00 0.00 1.96 2.94 0.00 0.00 1.87 1.47 0.00 0.00 5.08 2.78 0.00 5.08 9.09 8.33 16.67 0.00 0.00 0.00 0.00 0.79 0.00 11.11 2.99 2.13 2.56 5.66 3.45 0.00 1.23 0.00 1.96 0.00 4.65 0.00 1.63 0.00 3.92 3.77 0.00 5.56 0.00 7.27 0.00 4.35 K alternative_acceptor CG17698 chr3L + chr3L_23741817_23741875 chr3L_23741817_23741871 chr3L_23741752_23741816;chr3L_23741876_23741939 90.00 94.44 87.50 90.62 90.91 94.44 88.57 89.47 89.47 NA 92.31 87.88 83.33 92.31 100.00 80.56 76.92 85.71 83.33 90.20 90.00 NA 95.00 85.71 92.86 91.67 94.12 87.50 88.89 88.89 95.45 92.31 NA 86.84 88.89 90.91 90.00 77.78 91.67 96.55 NA 86.11 80.95 89.47 100.00 94.74 81.25 NA 87.18 90.00 94.74 89.47 92.31 94.12 95.24 100.00 87.50 85.71 K multi_cassette CG5174,F_chr2R_14309059_14311473,CE_chr2R_14309063_14311473 chr2R + chr2R_14309059_14311631 chr2R_14309059_14311373;chr2R_14311377_14311473;chr2R_14311513_14311631 chr2R_14311374_14311376;chr2R_14311474_14311512 chr2R_14308963_14309058;chr2R_14311632_14311756 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention PHGPx chr3L + chr3L_3326368_3326522 chr3L_3326367_3326368;chr3L_3326522_3326523 chr3L_3326358_3326367;chr3L_3326523_3326712 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.61 100.00 100.00 100.00 97.05 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG18815 chr3L + chr3L_11622699_11623566 chr3L_11622699_11623329 chr3L_11622681_11622698;chr3L_11623567_11623845 88.89 88.89 69.23 71.43 83.33 75.00 NA 92.86 95.45 NA 80.00 100.00 NA 87.50 71.43 80.00 80.00 88.89 77.78 75.86 66.67 88.24 94.12 90.91 100.00 100.00 100.00 NA 80.00 100.00 91.67 80.00 71.43 73.08 100.00 100.00 92.86 100.00 87.50 93.33 80.00 90.48 66.67 85.71 81.25 86.67 91.67 100.00 81.25 100.00 72.73 91.67 100.00 90.00 88.89 90.91 91.67 75.00 K intron_retention lark,noncoding_11093,REI_chr3L_7332718_7333975,RI_chr3L_7334219_7334452 chr3L + chr3L_7333009_7333061 chr3L_7333008_7333009;chr3L_7333061_7333062 chr3L_7332968_7333008;chr3L_7333062_7333870 94.44 100.00 NA 100.00 100.00 NA NA 90.91 95.65 100.00 NA 100.00 93.33 NA NA NA 88.89 NA 100.00 100.00 NA 73.91 94.44 100.00 92.86 100.00 90.00 100.00 NA 93.75 NA 91.67 88.24 93.75 100.00 NA 95.00 84.62 91.67 100.00 90.00 90.91 NA 88.89 91.67 100.00 100.00 100.00 92.31 94.74 93.33 100.00 NA 100.00 100.00 93.75 88.89 91.67 K intron_retention CG8547 chr2R - chr2R_10149677_10149979 chr2R_10149676_10149677;chr2R_10149979_10149980 chr2R_10149485_10149676;chr2R_10149980_10151034 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA 6.67 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 4.35 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA K intron_retention CG42389,CG31815,CG4631,I_chr2L_16622842_16634725 chr2L + chr2L_16604397_16621835 chr2L_16604396_16604397;chr2L_16621835_16621836 chr2L_16604238_16604396;chr2L_16621836_16622841 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 NA 0.00 0.00 2.22 0.00 4.88 1.05 4.55 0.00 1.67 1.12 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 3.33 0.00 0.00 0.00 0.00 0.00 0.00 2.04 NA 2.78 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 5.26 NA NA 0.00 K jcn_only_AA mbc,I_chr3R_19615584_19615649,I_chr3R_19625220_19625288 chr3R + chr3R_19625373_19625589 chr3R_19625373_19625465 chr3R_19625289_19625372;chr3R_19625590_19625680 0.00 0.00 0.00 2.27 1.92 0.00 1.41 0.73 0.00 5.56 0.00 0.73 0.00 2.86 0.00 0.00 0.00 0.00 1.54 0.00 0.00 1.75 0.93 1.18 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 4.55 0.73 0.00 0.00 1.20 2.13 0.00 1.37 6.90 0.69 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 3.41 0.00 0.00 0.00 1.41 0.00 3.12 NA K jcn_only_AA CG14133 chr3L - chr3L_11683229_11683325;chr3L_11683239_11683325 chr3L_11683209_11683325 chr3L_11683326_11683412;chr3L_11682731_11683208 81.82 NA NA NA NA NA NA NA 85.19 NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 81.82 NA 80.00 NA NA NA NA NA NA NA NA 81.82 NA NA NA 96.00 88.89 K jcn_only_AD Best1,I_chr3R_5991957_5995913,RI_chr3R_5993184_5995905 chr3R - chr3R_5989579_5990440;chr3R_5989579_5990058 chr3R_5989579_5990296 chr3R_5988921_5989578;chr3R_5990441_5990683 2.33 2.84 2.00 2.99 0.00 3.26 3.77 2.04 0.45 0.79 1.23 1.59 2.22 1.83 4.80 2.50 2.60 0.00 3.12 1.38 2.11 0.00 3.26 0.00 0.00 1.35 3.42 0.00 2.33 0.98 3.82 4.69 2.41 1.96 2.11 5.38 2.60 2.74 0.51 2.03 6.90 3.28 2.47 1.99 0.00 2.10 2.78 2.38 2.26 2.91 1.21 3.85 5.88 2.63 0.94 4.44 7.25 3.70 K jcn_only_AD TSG101 chr3L + chr3L_16836026_16836202 chr3L_16836133_16836202 chr3L_16836203_16836333;chr3L_16835892_16836025 96.32 97.40 96.49 97.26 94.90 96.06 97.88 95.45 97.60 89.39 95.52 98.94 95.03 96.57 97.56 96.89 97.37 96.64 95.85 96.39 94.93 95.59 94.27 98.59 94.17 93.49 95.40 96.12 91.30 92.39 84.49 94.95 98.04 98.72 92.45 84.48 96.95 97.00 94.34 97.62 95.28 97.12 99.11 95.45 96.12 99.25 100.00 92.86 99.23 96.32 96.07 100.00 96.75 97.87 96.74 96.67 93.22 95.81 K intron_retention RpS5a,I_chrX_17038786_17039048,I_chrX_17041234_17041901,I_chrX_17041234_17041720,RI_chrX_17041234_17041750,RI_chrX_17041234_17041760,I_chrX_17041234_17041832,I_chrX_17041234_17041844,I_chrX_17041976_17042236 chrX - chrX_17041234_17042236 chrX_17041233_17041234;chrX_17042236_17042237 chrX_17041175_17041233;chrX_17042237_17042336 0.04 0.00 0.04 0.00 0.00 0.00 0.15 0.06 0.00 0.00 0.08 0.00 0.11 0.11 0.07 0.03 0.00 0.04 0.09 0.06 0.09 0.00 0.06 0.00 0.07 0.08 0.53 0.53 0.17 0.00 0.07 0.00 0.00 0.13 0.00 0.00 0.04 0.04 0.07 0.15 0.00 0.04 0.13 0.05 0.00 0.17 0.00 0.00 0.17 0.18 0.00 0.00 0.00 0.00 0.03 0.00 0.04 0.00 N alternative_donor CG5646,I_chr3R_23386287_23386484 chr3R - chr3R_23385937_23386017 chr3R_23385937_23385995 chr3R_23385868_23385936;chr3R_23386018_23386080 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 82.35 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Dhc64C chr3L - chr3L_4813090_4813327 chr3L_4813089_4813090;chr3L_4813327_4813328 chr3L_4813022_4813089;chr3L_4813328_4815436 3.85 0.00 NA 26.09 NA NA 0.00 0.00 0.00 0.00 NA 7.41 NA NA NA 13.33 NA NA NA 5.71 NA 0.00 4.44 0.00 7.41 NA 0.00 NA 0.00 3.85 NA NA NA 7.41 0.00 0.00 6.45 NA 9.09 18.92 NA 0.00 NA 0.00 NA 11.11 0.00 17.65 6.25 0.00 5.56 NA 0.00 0.00 7.69 3.85 NA 7.14 K jcn_only_AD Hr78,I_chr3L_21490089_21490390 chr3L - chr3L_21488969_21489526 chr3L_21488969_21489520 chr3L_21488699_21488968;chr3L_21489527_21489841 88.89 78.12 84.21 88.24 96.00 88.89 78.38 88.24 88.33 NA 85.71 88.89 86.96 80.00 89.74 NA 87.50 95.83 86.36 84.31 88.00 70.00 97.22 87.18 NA NA 87.18 NA 92.86 NA 92.86 95.45 85.71 94.74 95.83 90.00 88.89 92.00 91.38 77.78 96.00 89.36 NA 92.86 87.80 83.33 88.46 94.74 86.05 100.00 89.19 90.91 91.30 95.24 84.21 89.29 90.91 76.92 K intron_retention Rbcn-3A chrX - chrX_6135845_6135905 chrX_6135844_6135845;chrX_6135905_6135906 chrX_6135761_6135844;chrX_6135906_6136039 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention noncoding_21514,CG4025 chrX + chrX_1971373_1971484 chrX_1971372_1971373;chrX_1971484_1971485 chrX_1971251_1971372;chrX_1971485_1971872 1.54 0.00 1.80 0.00 0.76 0.00 2.72 3.09 1.54 0.00 0.00 1.03 0.00 1.08 4.72 5.21 2.20 1.94 0.00 2.21 2.94 4.46 2.16 1.55 3.80 0.00 1.40 5.00 5.41 0.00 2.94 1.54 4.94 2.58 0.00 3.12 0.90 0.83 1.63 3.85 1.49 1.49 0.00 0.00 2.04 2.70 0.00 1.75 1.31 1.85 1.68 0.00 0.00 0.00 1.42 0.00 2.34 6.52 K intron_retention CG4747 chr2L + chr2L_10007504_10007566 chr2L_10007503_10007504;chr2L_10007566_10007567 chr2L_10007414_10007503;chr2L_10007567_10007941 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.46 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor AIF chr2L + chr2L_2152463_2152662;chr2L_2152271_2152662 chr2L_2152466_2152662 chr2L_2152663_2152944;chr2L_2152233_2152270 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 11.76 0.00 0.00 4.76 0.00 6.25 7.14 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 2.94 0.00 5.26 0.00 0.00 0.00 10.53 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4771,CG17141 chr3R - chr3R_18569029_18569082 chr3R_18569028_18569029;chr3R_18569082_18569083 chr3R_18568897_18569028;chr3R_18569083_18569276 0.00 0.00 0.00 0.00 0.00 0.00 8.00 0.00 0.00 NA 0.00 5.00 0.00 0.00 8.33 5.26 5.56 0.00 0.00 0.00 0.00 NA 5.88 0.00 NA 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 3.03 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention Tsp42Ef,I_chr2R_2912947_2914327 chr2R + chr2R_2914663_2914723 chr2R_2914662_2914663;chr2R_2914723_2914724 chr2R_2914489_2914662;chr2R_2914724_2914885 0.00 0.00 1.77 1.19 0.00 0.00 0.00 1.11 1.77 0.00 0.98 1.44 0.00 0.00 0.00 0.00 0.00 0.00 0.86 1.15 0.00 0.31 0.00 0.00 0.00 0.00 3.14 3.92 0.00 0.00 0.00 1.15 0.65 0.00 0.00 0.00 0.00 0.00 1.03 0.59 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.34 2.40 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor AnnIX chr3R + chr3R_16891008_16893167;chr3R_16891137_16893167;chr3R_16891124_16893167 chr3R_16891033_16893167 chr3R_16893168_16893221;chr3R_16890951_16891007 25.89 30.77 19.66 15.29 33.90 18.75 25.33 16.56 30.99 52.17 19.64 27.45 35.09 24.32 17.96 28.16 22.00 25.89 17.49 21.54 28.00 42.03 55.10 70.27 60.00 17.07 52.17 42.11 25.00 19.23 17.92 21.43 9.09 16.95 39.02 33.33 50.00 57.69 66.67 23.19 14.29 20.25 16.28 23.33 13.33 26.39 63.04 12.20 13.86 52.78 52.54 50.00 34.78 61.76 16.46 53.85 60.00 9.30 K alternative_donor Npc1a chr2L - chr2L_10218890_10220868;chr2L_10218890_10220796;chr2L_10218890_10220834 chr2L_10218890_10220692 chr2L_10218779_10218889;chr2L_10220869_10220873 68.18 68.00 62.96 68.18 68.75 75.00 74.19 69.23 69.23 69.23 70.00 60.00 58.82 76.19 48.00 76.60 70.83 70.37 63.33 54.76 76.47 66.67 63.33 57.14 63.64 62.50 72.22 62.50 59.09 65.22 71.43 87.50 60.87 70.69 81.25 60.00 44.44 75.00 53.85 75.68 81.82 65.45 69.57 63.64 66.67 87.50 50.00 64.29 65.00 83.33 72.73 56.25 87.50 75.00 69.23 54.55 60.00 83.33 K intron_retention Su(var)3-3 chr3L + chr3L_20220618_20220677 chr3L_20220617_20220618;chr3L_20220677_20220678 chr3L_20219873_20220617;chr3L_20220678_20221444 96.15 96.15 100.00 100.00 91.67 93.33 94.74 95.45 94.44 100.00 93.33 100.00 91.67 93.75 100.00 100.00 100.00 92.86 100.00 96.55 90.00 100.00 96.15 100.00 91.67 100.00 90.00 93.33 94.44 100.00 100.00 100.00 89.29 96.30 92.31 100.00 96.43 95.00 95.00 95.83 90.00 100.00 100.00 95.00 100.00 91.67 91.67 100.00 96.15 94.74 94.12 100.00 93.33 100.00 100.00 100.00 94.12 95.24 K alternative_acceptor MYPT-75D,RI_chr3L_18657921_18658010 chr3L + chr3L_18657921_18659115 chr3L_18657921_18658797 chr3L_18657821_18657920;chr3L_18659116_18659359 100.00 NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA N jcn_only_AA CG7091,RI_chr3R_8805541_8805680,I_chr3R_8809774_8809832 chr3R + chr3R_8804251_8804598 chr3R_8804251_8804579 chr3R_8803691_8804250;chr3R_8804599_8804832 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.76 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA 26.98 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA K intron_retention Mekk1 chr3R - chr3R_14559331_14559475 chr3R_14559330_14559331;chr3R_14559475_14559476 chr3R_14559151_14559330;chr3R_14559476_14562191 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.65 0.00 0.00 0.00 1.53 0.00 1.49 1.09 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention bves chrX + chrX_20932585_20946391 chrX_20932584_20932585;chrX_20946391_20946392 chrX_20931522_20932584;chrX_20946392_20946549 0.00 0.00 NA 12.50 16.67 NA NA 4.55 14.81 NA NA 10.00 NA NA 12.50 14.29 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA 3.70 0.00 0.00 0.00 NA 9.52 NA 0.00 NA NA NA NA 0.00 NA 0.00 NA 0.00 NA 10.53 NA NA 0.00 K intron_retention CG31012,I_chr3R_26643930_26646602 chr3R + chr3R_26635006_26642596 chr3R_26635005_26635006;chr3R_26642596_26642597 chr3R_26634341_26635005;chr3R_26642597_26642846 3.70 1.98 5.00 5.52 2.35 6.41 4.55 2.62 3.38 2.04 6.90 3.61 6.02 4.55 3.20 4.58 5.21 7.48 3.54 5.49 6.74 4.81 3.07 3.12 6.32 6.19 3.70 0.00 9.23 3.70 5.83 4.88 0.00 3.89 3.70 7.37 3.57 0.00 3.68 0.00 3.77 4.10 5.68 3.64 1.82 3.06 4.21 0.00 3.97 1.64 3.16 3.09 2.78 4.05 3.45 4.00 3.10 0.00 K alternative_acceptor Trn chr3L + chr3L_6186723_6187147 chr3L_6186723_6187144 chr3L_6186710_6186722;chr3L_6187148_6187250 78.68 75.00 86.67 79.41 NA 72.73 88.24 75.86 78.57 NA 90.91 70.00 76.92 68.42 76.00 75.51 81.25 73.33 70.83 91.18 93.33 85.71 90.48 77.78 70.00 80.00 76.47 90.48 87.50 81.82 73.08 NA 75.00 83.33 75.00 66.67 94.12 NA 71.43 91.67 NA 81.48 71.43 81.82 NA NA NA 92.31 78.79 NA 77.78 NA NA NA 88.89 NA NA NA K alternative_acceptor ATPsyn-Cf6,I_chr3R_19181508_19181563,I_chr3R_19181524_19181702 chr3R - chr3R_19181508_19181702 chr3R_19181524_19181702 chr3R_19181703_19181733;chr3R_19181424_19181507 0.00 0.00 0.44 0.00 0.00 0.25 0.00 0.00 0.12 0.00 0.53 0.13 0.00 0.55 0.00 0.21 0.00 0.23 0.00 0.17 0.00 0.00 1.32 1.31 0.00 0.55 0.87 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.88 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.78 0.00 0.00 0.63 0.20 0.00 0.00 0.00 K alternative_acceptor CG11652,I_chr3L_11689925_11689974 chr3L - chr3L_11688679_11689974 chr3L_11689925_11689974 chr3L_11689975_11690074;chr3L_11688579_11688678 4.17 3.70 2.94 5.26 8.33 3.70 8.82 4.00 6.06 4.55 10.53 5.71 4.00 5.26 2.50 5.56 4.35 9.09 3.23 3.23 13.33 5.71 4.17 5.56 4.76 3.12 5.26 12.50 18.18 3.23 5.56 4.55 4.35 6.82 0.00 4.17 3.03 4.35 3.57 3.12 5.56 5.00 3.45 3.57 5.88 2.94 3.57 3.12 3.64 0.00 3.33 3.45 9.09 0.00 2.86 4.76 0.00 2.78 K intron_retention Gbeta13F,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,RI_chrX_15755345_15755409 chrX + chrX_15755520_15755598 chrX_15755519_15755520;chrX_15755598_15755599 chrX_15755417_15755519;chrX_15755599_15756919 39.05 NA 46.15 56.25 NA NA 41.67 40.91 40.00 NA NA 33.33 36.36 42.86 NA 35.71 NA NA 53.33 45.00 NA NA 30.77 33.33 NA NA 25.00 NA NA NA NA NA NA 36.84 NA NA NA NA NA 46.15 NA 40.00 NA NA NA NA NA NA 38.10 NA 35.71 NA NA NA 36.36 NA NA NA K intron_retention CG9086,CEI_chrX_16859981_16861527,I_chrX_16861895_16862053 chrX - chrX_16861753_16862542 chrX_16861752_16861753;chrX_16862542_16862543 chrX_16861528_16861752;chrX_16862543_16862684 80.65 83.33 75.00 46.51 76.47 56.25 84.62 77.78 79.17 84.62 88.89 72.73 65.00 80.95 69.23 72.41 68.42 68.42 76.92 68.97 77.78 100.00 70.97 86.96 93.33 84.00 83.33 50.00 87.50 69.57 70.83 NA 86.36 73.53 92.86 94.12 82.61 81.82 94.74 80.65 88.89 87.80 73.68 94.12 87.50 92.86 63.64 84.62 69.44 60.00 70.97 80.95 87.50 NA 82.76 66.67 NA NA K jcn_only_AD yrt chr3R - chr3R_9255492_9255914 chr3R_9255492_9255819 chr3R_9254589_9255491;chr3R_9255915_9256472 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.17 0.00 NA 3.12 NA 0.00 3.70 0.00 0.00 0.00 NA 0.00 0.00 0.00 1.64 4.35 0.00 0.00 4.17 0.00 0.00 0.00 2.50 0.00 0.00 2.78 NA 0.00 0.00 0.00 0.00 2.94 0.00 K alternative_donor Hph chr3R + chr3R_1090925_1092474 chr3R_1091360_1092474 chr3R_1092475_1092754;chr3R_1090787_1090924 88.46 95.00 87.50 72.34 73.08 95.83 93.44 88.46 87.84 53.33 93.75 97.92 92.86 95.45 85.19 94.64 91.30 86.36 94.44 87.50 90.48 84.21 93.33 80.95 72.73 88.46 86.67 88.89 80.00 100.00 91.30 70.00 85.71 93.44 90.91 78.57 83.33 92.31 78.57 88.24 64.29 91.38 95.65 95.00 84.62 94.12 73.68 77.78 94.74 91.67 81.82 87.50 80.00 100.00 90.32 83.33 100.00 88.89 N alternative_donor Inos,I_chr2R_3344353_3345211,noncoding_4874 chr2R - chr2R_3344353_3345211;chr2R_3344353_3346212;chr2R_3344353_3344799 chr2R_3344353_3346113 chr2R_3344253_3344352;chr2R_3346213_3346215 98.83 98.94 99.53 98.83 99.47 99.08 98.59 99.22 98.59 99.53 98.18 97.82 99.48 99.28 98.35 98.36 99.38 98.05 99.44 98.83 98.59 94.92 98.69 98.59 99.37 99.47 99.15 97.68 95.72 98.08 98.24 98.39 96.28 98.73 99.12 99.12 99.57 99.08 98.77 98.37 99.35 98.76 97.90 99.39 98.80 98.34 99.39 99.13 98.57 99.21 98.71 99.27 99.51 98.64 98.43 98.97 99.41 99.22 K jcn_only_AD SD23414,CG9132,I_chrX_16693612_16694097,I_chrX_16693612_16694529,I_chrX_16696492_16696589 chrX - chrX_16693612_16696171;chrX_16693612_16694558 chrX_16693612_16694097 chrX_16693512_16693611;chrX_16696172_16696233 0.00 1.16 1.11 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 1.28 1.07 0.85 0.00 0.00 2.88 0.00 0.00 0.00 1.05 2.33 0.00 0.00 0.00 1.52 0.00 0.81 0.00 0.00 0.00 0.70 1.61 1.23 0.00 1.03 0.00 0.00 0.00 0.00 0.63 1.92 0.00 0.00 0.00 0.00 0.00 1.72 K jcn_only_AA eIF-4E,RI_chr3L_9394049_9394139,RI_chr3L_9394054_9394756,I_chr3L_9394468_9395446,I_chr3L_9394819_9395198,I_chr3L_9394819_9395379 chr3L - chr3L_9394049_9394139 chr3L_9394054_9394139 chr3L_9394140_9394239;chr3L_9393954_9394048 100.00 100.00 100.00 99.23 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.56 100.00 100.00 99.46 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.56 99.80 100.00 100.00 100.00 100.00 99.60 100.00 99.52 100.00 100.00 98.60 100.00 100.00 100.00 100.00 99.70 100.00 K intron_retention Mec2,I_chrX_19082929_19083066,I_chrX_19083581_19083676 chrX + chrX_19082317_19083066 chrX_19082316_19082317;chrX_19083066_19083067 chrX_19082011_19082316;chrX_19083067_19083166 0.54 0.00 0.66 1.82 0.88 0.70 0.82 0.54 0.70 0.54 3.68 0.57 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 1.76 1.50 0.53 0.71 0.00 0.00 0.67 0.87 2.40 0.89 0.00 0.74 0.80 0.00 0.37 0.40 0.81 0.00 0.00 0.69 0.92 0.62 0.00 0.00 0.53 0.46 0.58 0.00 0.43 0.12 0.56 0.00 0.55 0.71 0.00 0.33 0.81 0.28 K intron_retention GlcAT-P,I_chr3L_11172482_11172633 chr3L - chr3L_11172817_11176733 chr3L_11172816_11172817;chr3L_11176733_11176734 chr3L_11172634_11172816;chr3L_11176734_11177238 2.35 1.09 1.72 5.41 0.00 0.00 0.00 4.26 3.01 0.00 0.00 4.82 1.52 2.56 1.41 2.13 0.00 0.00 0.00 2.82 0.00 5.00 1.64 0.00 4.44 5.26 2.82 3.39 0.00 2.60 2.27 5.00 3.23 2.15 0.00 14.29 3.48 2.70 3.23 4.08 6.67 1.56 3.77 4.55 4.88 4.08 0.00 2.33 0.79 3.45 2.27 4.88 1.52 4.55 2.99 0.00 1.22 2.35 K intron_retention SelR,I_chr3R_6691367_6692250,I_chr3R_6692461_6692530,I_chr3R_6694098_6694160 chr3R - chr3R_6689548_6692250 chr3R_6689547_6689548;chr3R_6692250_6692251 chr3R_6689071_6689547;chr3R_6692251_6692350 14.04 8.33 14.29 26.67 10.42 14.58 20.83 12.31 12.26 14.00 47.22 11.36 20.00 13.79 15.07 10.53 8.00 17.02 12.82 22.22 22.22 19.51 14.29 8.82 14.63 25.00 16.67 18.18 16.00 16.42 13.16 19.15 18.18 10.29 22.92 28.95 8.55 14.81 7.63 10.58 14.04 15.73 14.29 5.26 13.75 12.77 7.14 13.51 11.76 10.99 12.99 14.29 4.67 9.86 17.54 6.94 9.32 16.43 K multi_cassette ens,I_chr3L_4130719_4131120 chr3L - chr3L_4127163_4131120 chr3L_4127163_4129650;chr3L_4129792_4130388;chr3L_4130644_4131120 chr3L_4129651_4129791;chr3L_4130389_4130643 chr3L_4126989_4127162;chr3L_4131121_4131220 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 16.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 K alternative_donor CG30090,RI_chr2R_11577574_11577625 chr2R + chr2R_11577570_11577625 chr2R_11577574_11577625 chr2R_11577626_11577671;chr2R_11577474_11577569 3.63 0.00 3.85 10.81 0.00 3.57 3.12 2.67 3.33 NA 0.00 1.43 4.48 2.94 0.00 2.50 0.00 1.75 3.85 4.35 5.36 4.00 8.70 3.70 7.69 4.88 6.90 NA 5.88 7.14 10.53 3.85 1.64 2.44 0.00 NA 2.56 4.17 7.89 0.00 3.70 4.63 2.78 1.96 5.88 6.38 0.00 2.63 3.92 0.00 5.26 5.00 6.52 2.44 2.17 3.45 2.35 3.85 K alternative_donor CG14253,E_chr3R_22806425_22807258 chr3R + chr3R_22806425_22809684;chr3R_22806314_22809684 chr3R_22806824_22809684 chr3R_22809685_22809939;chr3R_22806256_22806313 50.52 57.14 46.46 50.52 47.62 37.29 47.75 50.95 62.37 75.00 67.09 73.76 50.00 55.65 48.44 54.26 58.06 36.13 68.00 43.02 38.53 45.28 49.25 52.31 58.14 52.04 51.72 42.86 48.78 44.44 53.33 42.62 42.86 61.14 51.02 36.11 35.00 44.12 43.48 56.18 37.10 56.50 52.94 54.55 59.46 47.06 48.72 56.25 52.55 61.11 42.53 40.91 52.78 66.67 48.03 57.38 34.33 48.89 K jcn_only_AD glo,I_chr3R_7644679_7644739,REI_chr3R_7644679_7644932,RI_chr3R_7644683_7644880,I_chr3R_7647556_7647628 chr3R - chr3R_7644683_7644880;chr3R_7644683_7644932;chr3R_7644683_7644908;chr3R_7644683_7644743 chr3R_7644683_7644739 chr3R_7644583_7644682;chr3R_7644933_7644980 8.75 8.91 12.24 16.67 20.45 13.16 16.79 15.86 9.15 2.56 24.49 8.82 11.27 16.28 10.68 6.53 15.00 NA 12.24 8.67 14.00 7.04 7.18 15.29 8.43 21.43 7.59 3.17 10.00 3.25 14.17 4.20 6.20 8.07 7.37 2.65 8.05 15.79 10.28 7.88 8.99 8.24 11.29 2.14 7.06 8.59 8.25 6.98 9.77 8.05 12.07 8.57 4.07 10.99 17.14 5.60 7.41 4.55 K intron_retention MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17395228_17397622 chr2R_17395227_17395228;chr2R_17397622_17397623 chr2R_17395018_17395227;chr2R_17397623_17397706 7.41 11.32 0.00 6.90 0.00 7.41 0.00 16.13 6.56 8.00 9.09 14.29 NA 6.67 20.69 14.29 0.00 0.00 NA 7.14 5.26 5.26 8.86 5.94 6.35 0.00 8.57 7.69 6.56 9.62 0.00 11.43 5.08 9.52 3.64 5.66 9.16 6.98 9.09 14.49 8.33 7.58 5.26 7.41 12.82 10.91 6.85 13.16 8.51 5.88 13.85 9.09 0.00 10.00 0.00 5.00 5.68 14.63 K alternative_donor RI_chr3R_7061265_7061322,CG31441,CG31388 chr3R + chr3R_7062215_7062271;chr3R_7062211_7062271 chr3R_7062207_7062271 chr3R_7062272_7063062;chr3R_7062165_7062206 32.58 NA NA 28.57 NA NA 37.50 0.00 31.82 NA NA 33.33 NA NA NA 25.00 NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA 68.75 NA NA 28.57 NA NA NA NA NA NA NA 28.57 NA NA NA NA 44.44 NA 33.33 NA NA NA NA NA 44.44 NA 36.36 NA K alternative_acceptor I_chr2R_9844856_9845327,CG13349,RI_chr2R_9846641_9846709 chr2R - chr2R_9846605_9846709 chr2R_9846641_9846709 chr2R_9846710_9846809;chr2R_9846541_9846604 20.00 16.15 19.23 29.63 17.58 17.24 22.22 31.19 22.70 18.42 16.67 15.92 19.67 32.65 27.27 27.12 20.00 21.79 26.87 21.81 18.67 25.58 17.04 16.87 27.97 36.47 41.53 30.43 41.50 15.95 21.52 21.36 16.96 15.38 17.53 29.57 13.22 14.69 19.40 21.89 25.49 18.27 26.98 26.02 17.06 23.49 19.14 31.62 25.00 13.83 19.08 19.23 15.75 23.44 17.20 19.23 19.68 26.95 K intron_retention CG7414,I_chr3L_21819515_21819581 chr3L + chr3L_21818178_21818349 chr3L_21818177_21818178;chr3L_21818349_21818350 chr3L_21817929_21818177;chr3L_21818350_21819514 0.98 0.80 1.28 2.24 0.00 0.00 2.25 0.45 1.95 0.00 0.00 0.98 0.00 1.00 1.52 0.00 0.99 0.00 0.00 2.01 0.00 4.43 1.07 0.00 2.56 4.11 0.67 2.05 1.97 0.66 3.70 1.43 0.60 1.55 1.95 2.31 0.84 0.52 1.59 1.83 2.18 1.43 0.00 1.35 1.05 0.86 0.70 1.16 0.65 0.78 1.36 0.00 0.00 0.00 2.17 0.73 0.26 0.61 K alternative_acceptor psq,RI_chr2R_6449696_6467831 chr2R + chr2R_6456884_6457578 chr2R_6456884_6457311 chr2R_6456873_6456883;chr2R_6457579_6457647 100.00 80.00 100.00 83.33 NA 75.00 100.00 81.82 100.00 NA NA 100.00 88.89 100.00 80.00 100.00 100.00 100.00 100.00 100.00 NA NA 75.00 NA NA 80.00 NA NA NA NA 66.67 NA NA 88.89 NA NA NA NA NA NA NA 81.82 100.00 NA NA NA NA NA 92.31 NA 100.00 NA NA NA 100.00 NA NA NA K alternative_donor CHKov1,F_chr3R_21149619_21151172 chr3R - chr3R_21149651_21149744 chr3R_21149651_21149718 chr3R_21149588_21149650;chr3R_21149745_21149810 92.98 93.10 84.78 89.47 96.43 88.57 92.71 95.80 89.38 95.35 91.67 93.44 88.14 91.49 89.13 93.26 88.37 95.35 96.36 95.40 85.71 95.56 91.67 96.88 100.00 89.19 90.00 88.46 95.65 100.00 90.41 80.00 82.98 89.81 96.43 83.33 97.44 77.78 85.11 88.06 95.24 93.18 88.89 95.45 94.87 95.92 93.55 92.98 95.06 90.57 94.59 90.91 93.33 100.00 94.64 97.06 92.31 91.18 K intron_retention RI_chrX_7172561_7252693,CG1677 chrX - chrX_7177902_7177973 chrX_7177901_7177902;chrX_7177973_7177974 chrX_7177625_7177901;chrX_7177974_7178791 0.00 0.00 0.00 1.52 0.00 0.00 1.32 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD YT521-B chr3L - chr3L_3373870_3374132 chr3L_3373870_3374018 chr3L_3372970_3373869;chr3L_3374133_3374188 97.92 95.35 98.84 96.67 93.48 100.00 100.00 97.22 93.48 94.00 91.18 97.58 100.00 96.77 94.25 95.41 90.00 98.21 100.00 94.54 97.50 100.00 99.12 97.33 96.25 100.00 98.00 96.00 100.00 100.00 94.53 98.70 98.41 96.49 98.84 98.80 91.53 97.44 96.58 99.36 97.92 97.79 98.28 100.00 98.77 97.53 98.68 100.00 98.51 98.55 100.00 90.74 98.65 100.00 97.78 98.59 97.18 96.72 K intron_retention CG31919,CG33995,F_chr2L_5045484_5046146 chr2L + chr2L_5043384_5045821 chr2L_5043383_5043384;chr2L_5045821_5045822 chr2L_5043377_5043383;chr2L_5045822_5045925 0.00 0.00 0.00 0.72 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.97 3.12 0.00 0.00 0.00 0.00 0.00 0.81 1.03 1.85 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 K intron_retention CG5840 chr3R + chr3R_13361574_13361754 chr3R_13361573_13361574;chr3R_13361754_13361755 chr3R_13361409_13361573;chr3R_13361755_13362420 6.25 NA NA NA NA NA NA NA 15.00 NA NA NA NA NA NA 21.43 NA NA NA 6.90 NA NA 22.22 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA 6.25 NA NA 14.29 NA 0.00 NA NA NA 6.25 NA NA 3.23 NA 10.53 NA NA NA 12.50 NA NA 5.56 K alternative_acceptor CG31068 chr3R + chr3R_23061584_23061627;chr3R_23061584_23061636 chr3R_23061584_23061639 chr3R_23061427_23061583;chr3R_23061640_23061706 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4842231_4843022 chrX_4842230_4842231;chrX_4843022_4843023 chrX_4842134_4842230;chrX_4843023_4843701 21.50 11.11 11.11 44.83 8.70 6.90 24.14 17.14 14.93 40.00 9.52 18.60 38.46 11.76 15.38 24.14 20.69 38.89 14.81 30.30 22.73 41.38 30.56 11.11 40.00 0.00 22.58 33.33 5.26 28.57 30.30 NA 39.29 20.00 28.57 23.53 24.56 20.59 8.57 16.67 40.00 12.77 6.67 25.00 41.67 15.00 14.29 36.36 21.95 0.00 12.77 21.05 NA NA 23.33 NA NA 28.57 K intron_retention CG3714,I_chr2L_4190825_4191774,I_chr2L_4192969_4193324,I_chr2L_4195905_4196470,I_chr2L_4196780_4197306,RI_chr2L_4196780_4197951,I_chr2L_4196815_4197306,I_chr2L_4196815_4197951 chr2L - chr2L_4196780_4197951 chr2L_4196779_4196780;chr2L_4197951_4197952 chr2L_4196715_4196779;chr2L_4197952_4197963 88.19 NA NA 90.91 NA NA 90.48 66.67 NA NA NA 87.50 NA NA NA 73.33 NA NA NA 54.55 NA NA NA NA NA NA NA NA NA NA NA NA NA 81.82 NA 90.91 NA NA NA 88.89 NA 90.00 NA 88.89 NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA N jcn_only_AA Lag1,I_chrX_6152540_6152929,RI_chrX_6153758_6161036,I_chrX_6160907_6161036 chrX - chrX_6152540_6152682 chrX_6152584_6152682 chrX_6152683_6152827;chrX_6152440_6152539 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette p120ctn,I_chr2R_482968_494268,I_chr2R_487593_493262 chr2R + chr2R_482968_494268 chr2R_482968_486373;chr2R_486654_486773;chr2R_487426_487488;chr2R_487593_494268 chr2R_486374_486653;chr2R_486774_487425;chr2R_487489_487592 chr2R_482868_482967;chr2R_494269_494368 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 83.33 83.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 60.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 K alternative_donor RpL32,I_chr3R_25871509_25871807 chr3R - chr3R_25871509_25871851;chr3R_25871509_25871771;chr3R_25871509_25871583;chr3R_25871509_25871855 chr3R_25871509_25871611 chr3R_25871409_25871508;chr3R_25871856_25871862 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.12 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.06 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG10602 chr2L - chr2L_18857404_18857541;chr2L_18857404_18857511 chr2L_18857404_18857587 chr2L_18857177_18857403;chr2L_18857588_18857700 85.27 92.50 86.11 90.38 97.50 82.35 85.19 89.06 88.00 NA 85.29 89.06 NA 93.18 69.77 87.50 84.78 84.38 89.58 90.91 80.00 84.85 91.53 89.47 83.87 90.32 90.00 97.50 74.29 90.00 85.00 69.57 59.38 85.25 66.67 71.43 93.33 96.67 94.74 80.34 79.31 89.29 75.00 83.33 78.57 83.87 91.67 70.69 93.42 90.00 84.85 89.58 89.29 NA 81.48 81.25 83.72 73.08 K multi_cassette CG8671,I_chr2L_21275807_21277205 chr2L + chr2L_21275807_21281131 chr2L_21275807_21277277;chr2L_21278430_21279883;chr2L_21280448_21281131 chr2L_21277278_21278429;chr2L_21279884_21280447 chr2L_21275724_21275806;chr2L_21281132_21281337 3.70 0.00 3.23 13.95 5.00 4.17 5.26 2.17 3.17 6.25 3.57 2.13 3.57 6.45 3.33 1.72 5.26 6.90 2.94 4.00 3.85 5.00 4.65 3.23 7.14 4.76 2.38 3.70 8.00 2.56 3.70 3.03 4.76 2.08 3.45 22.22 4.17 10.53 3.57 0.84 2.78 1.82 4.35 2.17 4.17 2.94 2.94 4.65 1.92 3.92 2.13 3.85 7.69 4.35 2.94 2.94 3.23 5.77 K intron_retention CG14446 chrX + chrX_6120254_6120472 chrX_6120253_6120254;chrX_6120472_6120473 chrX_6119667_6120253;chrX_6120473_6120737 7.69 NA NA NA NA 14.29 NA 14.29 0.00 NA NA 6.90 NA NA 14.29 NA NA NA NA 10.53 NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA 7.69 0.00 7.69 0.00 NA NA NA 0.00 0.00 NA 13.33 NA NA NA NA 0.00 NA 11.76 NA 7.14 K intron_retention CG31650,RI_chr2L_5041540_5042490,I_chr2L_5042888_5042983,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5041837_5042490 chr2L_5041836_5041837;chr2L_5042490_5042491 chr2L_5041689_5041836;chr2L_5042491_5042590 0.00 0.00 0.91 2.08 0.00 0.00 1.75 1.52 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 1.16 0.00 1.79 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 1.82 0.00 K intron_retention Pka-R1,CG3288 chr3L + chr3L_20826758_20826829 chr3L_20826757_20826758;chr3L_20826829_20826830 chr3L_20826383_20826757;chr3L_20826830_20826969 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention LIMK1,I_chrX_12488942_12489000 chrX - chrX_12484518_12485963 chrX_12484517_12484518;chrX_12485963_12485964 chrX_12483874_12484517;chrX_12485964_12486193 0.00 0.00 6.25 2.08 0.00 0.00 2.27 4.76 0.00 0.00 0.00 0.00 5.56 0.00 2.38 0.00 3.03 2.86 0.00 3.39 0.00 7.50 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 NA 0.00 2.94 0.00 0.00 1.96 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K intron_retention CG9065,I_chrX_14978317_14978385 chrX - chrX_14978299_14978385 chrX_14978298_14978299;chrX_14978385_14978386 chrX_14978217_14978298;chrX_14978386_14978485 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 1.04 0.00 0.00 0.00 0.00 2.78 0.00 2.26 7.14 0.00 0.00 0.00 0.48 0.00 0.00 0.00 1.71 0.00 0.00 1.46 0.00 0.00 0.00 0.00 0.45 0.00 1.42 0.00 0.00 1.03 1.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Eip63E,I_chr3L_3607397_3607501 chr3L + chr3L_3578481_3593328 chr3L_3578481_3588041 chr3L_3578289_3578480 55.38 66.67 46.67 81.97 58.54 63.41 16.49 54.24 58.45 32.00 55.56 71.43 67.74 66.67 46.81 55.38 61.70 62.50 65.00 74.55 47.06 47.56 66.67 58.06 46.15 45.00 57.95 49.32 51.61 61.11 54.55 50.00 40.00 62.50 60.47 36.71 61.43 68.75 55.29 24.53 48.65 55.21 58.82 60.82 23.64 51.72 53.33 48.24 49.41 57.14 45.33 51.61 39.47 66.67 56.41 62.22 58.33 42.59 K multi_cassette CG11299,noncoding_8970,I_chr2R_19602423_19609308,I_chr2R_19619053_19619186 chr2R + chr2R_19601642_19616571 chr2R_19601642_19602229;chr2R_19602423_19609732;chr2R_19610399_19616571 chr2R_19602230_19602422;chr2R_19609733_19610398 chr2R_19601628_19601641;chr2R_19616572_19616757 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 90.91 100.00 100.00 100.00 100.00 K intron_retention Inos,I_chr2R_3344353_3345211,noncoding_4874 chr2R - chr2R_3343582_3343653 chr2R_3343581_3343582;chr2R_3343653_3343654 chr2R_3343339_3343581;chr2R_3343654_3344352 0.57 0.52 0.42 0.92 0.59 0.73 0.54 0.98 0.74 0.34 0.58 0.53 0.51 0.83 1.20 0.93 1.10 0.43 0.70 0.46 0.57 0.79 0.66 0.52 0.35 0.68 1.10 1.28 0.84 0.58 0.90 0.00 0.60 0.88 0.65 0.50 0.45 0.23 0.47 0.82 0.00 0.76 0.47 0.17 0.57 0.35 0.53 0.00 1.02 0.76 0.42 0.56 0.40 0.42 0.50 0.56 0.56 1.30 K intron_retention Syx5,fzy chr2L + chr2L_16308330_16308397 chr2L_16308329_16308330;chr2L_16308397_16308398 chr2L_16307620_16308329;chr2L_16308398_16309274 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.49 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG10737 chr2R + chr2R_15062754_15063770;chr2R_15062754_15063692 chr2R_15062754_15063752 chr2R_15062592_15062753;chr2R_15063771_15063852 5.75 7.69 8.77 10.87 7.32 0.00 13.64 3.39 8.47 2.50 3.64 6.10 2.78 3.85 1.47 16.00 2.27 5.45 2.22 8.70 13.89 15.05 4.31 2.78 2.17 4.17 3.41 8.57 1.64 6.45 4.08 1.75 38.71 13.33 8.89 2.00 5.75 8.14 4.63 6.90 0.00 8.51 13.79 2.11 15.87 1.05 2.47 8.70 8.49 4.55 5.15 8.00 7.35 6.06 3.64 10.53 4.76 7.26 K alternative_acceptor CG32809,I_chrX_1576815_1577129,I_chrX_1577031_1577129,CEI_chrX_1579569_1579679,RI_chrX_1585391_1586471,I_chrX_1589508_1589564 chrX - chrX_1571099_1571167 chrX_1571112_1571167 chrX_1571168_1571350;chrX_1570956_1571098 2.33 0.00 0.00 4.76 NA 0.00 5.88 0.00 4.65 3.33 0.00 0.00 NA 7.14 0.00 NA 0.00 NA 5.26 0.00 NA 1.59 3.03 3.23 0.00 0.00 0.00 0.00 2.63 1.72 0.00 2.70 2.47 3.85 6.25 2.56 2.50 9.52 1.82 2.27 3.23 2.22 NA 0.00 2.00 0.00 3.85 1.98 3.45 NA 2.78 NA NA 5.00 5.56 4.17 NA 2.33 K intron_retention UbcD6,RI_chr3R_776749_776832 chr3R - chr3R_776475_776590 chr3R_776474_776475;chr3R_776590_776591 chr3R_776189_776474;chr3R_776591_776659 12.91 NA NA 19.05 NA NA 13.33 16.67 10.53 NA NA 23.81 NA NA NA 8.33 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA 22.22 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention CG32803,I_chrX_1795047_1795115,RI_chrX_1795648_1795745,I_chrX_1798310_1798525,I_chrX_1798315_1798577 chrX - chrX_1795047_1795097 chrX_1795046_1795047;chrX_1795097_1795098 chrX_1794947_1795046;chrX_1795098_1795310 0.00 1.89 0.00 4.17 0.00 0.00 3.77 0.00 3.95 0.00 0.00 4.60 2.56 2.70 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 1.37 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 3.57 0.00 4.44 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 2.94 0.00 K intron_retention I_chr2L_19388570_19389922,CG17544 chr2L - chr2L_19391220_19391437 chr2L_19391219_19391220;chr2L_19391437_19391438 chr2L_19390567_19391219;chr2L_19391438_19391783 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Mcm3 chrX + chrX_5219686_5219762 chrX_5219686_5219759 chrX_5219452_5219685;chrX_5219763_5220771 100.00 96.30 95.65 100.00 100.00 100.00 95.24 100.00 98.11 93.75 100.00 100.00 100.00 100.00 96.15 96.43 100.00 100.00 100.00 98.25 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 93.75 100.00 94.12 100.00 94.74 94.12 98.08 100.00 97.67 100.00 100.00 97.96 100.00 100.00 100.00 100.00 96.67 94.12 100.00 100.00 100.00 100.00 92.86 100.00 92.31 100.00 100.00 100.00 K alternative_donor CG5789,I_chr3R_20367314_20369052,I_chr3R_20367337_20369421 chr3R - chr3R_20367314_20369421 chr3R_20367314_20369052 chr3R_20367237_20367313;chr3R_20369422_20369521 0.83 1.89 1.52 1.61 0.00 0.00 2.11 0.83 0.56 2.50 2.33 1.83 1.61 2.27 0.00 0.00 0.00 0.00 0.00 0.83 1.67 1.19 1.59 2.56 6.25 1.79 1.82 2.86 5.45 0.00 2.94 0.00 0.78 1.71 0.00 2.38 0.00 2.70 0.00 1.85 0.00 2.21 0.00 5.08 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 NA 1.28 0.00 0.00 0.00 K jcn_only_AD CaMKI,I_chr4_466377_467726,I_chr4_467862_471815,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_466592_467726;chr4_466275_467726;chr4_466377_467726;chr4_466798_467726;chr4_467273_467726 chr4_467662_467726 chr4_467727_467826;chr4_466269_466274 96.27 90.00 NA 83.87 NA 95.00 100.00 94.55 97.06 NA NA 94.59 100.00 95.24 NA 95.00 95.65 NA 100.00 96.88 NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 93.94 95.00 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K multi_cassette Vha100-1,I_chr3R_24958227_24960770,RI_chr3R_24959152_24959582,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24958227_24960770 chr3R_24958227_24959582;chr3R_24959684_24960278;chr3R_24960321_24960770 chr3R_24959583_24959683;chr3R_24960279_24960320 chr3R_24958127_24958226;chr3R_24960771_24960870 50.00 55.56 NA 69.23 NA 55.56 60.00 71.43 66.67 NA 100.00 97.62 NA 83.33 70.00 50.00 NA 75.00 NA 63.64 77.78 20.00 55.00 50.00 36.36 66.67 25.00 NA 33.33 37.50 29.63 50.00 40.00 55.56 50.00 69.23 42.11 44.44 50.00 20.00 44.44 58.82 NA 50.00 63.64 45.45 45.45 37.50 73.33 36.36 43.75 33.33 50.00 NA 85.71 50.00 55.56 71.43 K intron_retention Csat chrX - chrX_2596809_2597320 chrX_2596808_2596809;chrX_2597320_2597321 chrX_2595150_2596808;chrX_2597321_2597440 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 1.27 0.00 0.00 2.56 4.17 0.00 0.00 4.65 0.00 0.00 0.00 2.22 0.00 2.02 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA orb2,I_chr3L_8942860_8947477 chr3L - chr3L_8937621_8940927 chr3L_8939541_8940927 chr3L_8940928_8940989;chr3L_8935392_8937620 87.50 92.31 86.49 70.00 83.33 86.67 86.84 83.87 81.25 NA NA 97.44 88.00 NA 88.24 93.48 86.36 100.00 93.55 89.71 NA 82.35 87.50 92.16 80.00 85.19 89.58 85.45 83.93 65.96 87.50 97.44 70.91 89.80 89.58 86.67 67.39 66.67 87.50 86.96 96.92 85.48 88.00 70.37 96.61 95.74 90.74 89.87 90.38 98.31 81.82 76.67 83.33 98.44 96.97 95.35 93.75 99.08 K alternative_donor lin chr2R + chr2R_4802513_4802569;chr2R_4802509_4802569 chr2R_4802505_4802569 chr2R_4802570_4805741;chr2R_4802033_4802504 15.38 17.65 15.38 13.33 11.11 0.00 9.09 18.75 20.69 11.11 9.09 14.81 8.33 8.33 23.53 8.33 11.11 11.11 11.11 20.59 21.43 25.00 22.58 16.00 20.00 7.69 32.14 21.05 22.22 14.29 0.00 22.22 22.22 30.43 5.88 6.25 21.43 26.09 13.16 6.45 18.75 13.33 11.11 21.05 13.33 18.18 30.77 17.86 14.29 26.67 15.38 8.33 7.69 30.77 26.32 13.33 20.00 22.22 K cassette Adk1,I_chr3L_12194597_12195884,I_chr3L_12194963_12195884,I_chr3L_12197507_12197558 chr3L - chr3L_12194597_12196818 chr3L_12194597_12194878;chr3L_12194963_12196818 chr3L_12194879_12194962 chr3L_12194497_12194596;chr3L_12196819_12197320 0.00 0.00 NA NA NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 4.35 0.00 0.00 NA 0.00 0.00 0.00 2.50 0.00 K intron_retention lig,CI_chr2R_3962006_3962916,I_chr2R_3962357_3962977,RI_chr2R_3962875_3962977 chr2R + chr2R_3961910_3962977 chr2R_3961909_3961910;chr2R_3962977_3962978 chr2R_3961906_3961909;chr2R_3962978_3963016 96.00 93.80 96.47 92.72 89.74 94.81 95.83 96.77 92.89 95.65 93.85 92.71 94.03 92.65 91.86 97.92 98.46 97.33 97.33 99.03 89.39 96.24 96.82 95.12 96.83 95.31 92.31 72.28 84.54 96.24 97.44 95.19 98.73 95.30 99.01 92.91 96.36 95.91 97.45 96.56 94.02 95.92 98.36 97.54 94.85 97.66 98.73 96.82 95.41 98.75 96.83 98.84 96.00 98.45 93.10 95.65 96.12 97.54 K jcn_only_AD RpL31,CG1827 chr2R + chr2R_5474844_5474951;chr2R_5474789_5474951 chr2R_5474734_5474951 chr2R_5474952_5475211;chr2R_5474727_5474733 96.12 96.12 93.52 98.09 96.19 96.25 86.34 96.17 94.38 96.22 94.42 94.42 92.62 87.10 98.63 93.55 96.76 95.59 96.51 96.74 95.33 98.76 93.95 96.54 99.08 96.56 75.51 96.54 91.47 97.16 93.02 98.05 99.17 96.83 95.71 89.87 92.84 93.55 92.65 98.80 96.48 98.27 97.17 94.98 98.66 95.20 90.51 97.03 95.83 96.89 89.77 94.76 96.85 72.46 98.00 90.77 93.11 97.86 K alternative_donor spn-A,I_chr3R_25881521_25881590 chr3R - chr3R_25881521_25881590 chr3R_25881521_25881583 chr3R_25881421_25881520;chr3R_25881591_25881690 98.21 94.44 97.22 97.78 94.12 97.06 97.22 100.00 97.73 100.00 92.86 100.00 100.00 95.83 100.00 97.73 100.00 100.00 96.67 98.70 100.00 94.74 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 97.50 97.50 100.00 97.96 100.00 100.00 100.00 92.31 96.77 97.78 96.55 98.39 100.00 95.00 97.50 97.87 100.00 98.21 100.00 100.00 96.30 92.31 92.86 93.33 100.00 100.00 100.00 98.18 K jcn_only_AD mbf1,RI_chr3L_16567888_16567952,RI_chr3L_16568077_16568816 chr3L + chr3L_16567888_16567952;chr3L_16567770_16567952 chr3L_16567853_16567952 chr3L_16567953_16568052;chr3L_16567701_16567769 98.34 98.71 98.94 96.86 99.55 99.19 97.53 98.31 98.90 98.25 96.95 96.80 96.86 98.09 98.34 99.17 97.74 98.71 99.36 98.11 99.41 94.59 99.56 98.59 93.91 99.21 99.31 99.50 95.02 98.56 97.95 97.44 96.06 98.86 93.64 98.41 97.37 97.44 98.39 98.34 94.02 97.44 98.57 98.25 96.22 97.78 96.02 96.00 98.47 99.57 100.00 96.69 98.73 99.05 98.96 98.18 99.38 99.17 K intron_retention l(2)k14505,I_chr2L_21275807_21277205 chr2L + chr2L_21261335_21261411 chr2L_21261334_21261335;chr2L_21261411_21261412 chr2L_21261217_21261334;chr2L_21261412_21261719 0.00 0.00 0.00 0.00 0.00 0.00 2.86 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 1.56 0.00 0.00 0.00 2.42 0.00 2.13 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 1.89 2.11 0.00 0.00 2.17 1.03 0.00 0.00 2.47 0.00 0.00 0.00 1.00 K mutually_exclusive CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8174699_8175994,chr2L_8176052_8176572 chr2L_8174699_8175175,chr2L_8175398_8176572 chr2L_8175995_8176051 chr2L_8175176_8175397 chr2L_8174536_8174698;chr2L_8176573_8176806 1.05 2.08 0.00 1.00 0.00 0.00 1.89 1.05 1.49 2.50 0.00 0.88 0.00 0.00 0.00 0.00 1.19 0.00 1.85 0.76 0.00 4.05 1.39 0.00 2.94 0.00 4.00 3.23 3.03 2.90 0.00 0.00 1.72 0.00 0.00 4.35 1.12 1.67 4.69 1.61 0.00 0.92 2.17 1.43 7.69 0.00 0.00 1.72 0.92 2.70 1.72 2.27 0.00 0.00 1.28 0.00 5.26 0.00 K intron_retention CG14480,I_chr2R_13452834_13452892 chr2R + chr2R_13452830_13452892 chr2R_13452829_13452830;chr2R_13452892_13452893 chr2R_13452734_13452829;chr2R_13452893_13452992 5.88 0.00 4.35 8.33 0.00 0.00 9.52 8.11 4.48 0.00 15.15 12.50 8.33 0.00 5.26 8.00 0.00 0.00 5.71 8.47 6.06 13.79 5.26 5.00 10.00 11.11 3.85 10.00 9.09 0.00 12.20 7.27 1.52 5.26 4.55 8.33 9.52 4.17 3.85 4.76 0.00 6.67 15.38 7.50 0.00 8.82 4.88 5.56 7.27 6.38 8.33 0.00 7.50 6.06 6.90 5.88 3.51 5.79 K jcn_only_AD Dscam,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3249373_3250528;chr2R_3249373_3251682;chr2R_3249373_3254309;chr2R_3249373_3253447;chr2R_3249373_3252522;chr2R_3249373_3252236;chr2R_3249373_3252816;chr2R_3249373_3253970;chr2R_3249373_3250836;chr2R_3249373_3251960 chr2R_3249373_3251099 chr2R_3249273_3249372 2.44 3.57 2.13 4.69 8.00 3.23 0.00 0.00 6.10 0.00 NA 7.35 5.41 5.88 2.44 1.89 0.00 0.00 0.00 2.22 8.00 3.75 8.57 13.89 2.13 0.00 8.11 6.45 3.57 3.53 1.96 3.57 3.75 1.82 0.00 4.76 7.27 2.63 0.00 0.00 0.00 1.54 3.12 0.00 0.00 2.63 4.17 2.33 0.00 NA 2.22 5.00 3.23 NA 1.92 0.00 NA 2.17 K intron_retention zip,I_chr2R_20878796_20879147 chr2R - chr2R_20889968_20893390 chr2R_20889967_20889968;chr2R_20893390_20893391 chr2R_20889811_20889967;chr2R_20893391_20893606 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.26 0.21 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.44 0.00 0.00 0.27 0.55 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6904,I_chr3R_10970962_10971422,I_chr3R_10970962_10972151,I_chr3R_10970962_10972185,I_chr3R_10970962_10972512,I_chr3R_10970962_10972522 chr3R - chr3R_10970962_10971039 chr3R_10970961_10970962;chr3R_10971039_10971040 chr3R_10970862_10970961;chr3R_10971040_10971059 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Tango9,RI_chr3R_7800180_7800239 chr3R - chr3R_7800180_7800267 chr3R_7800180_7800239 chr3R_7800080_7800179;chr3R_7800268_7800339 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.23 0.00 0.00 2.50 NA 0.00 8.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 5.00 7.32 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 4.35 NA NA 0.00 NA 0.00 0.00 0.00 NA 6.25 3.45 0.00 NA K alternative_donor CG17600 chrX + chrX_21942714_21942775 chrX_21942723_21942775 chrX_21942776_21942904;chrX_21942596_21942713 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA 1.92 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1317 chr3L - chr3L_2368426_2368620 chr3L_2368425_2368426;chr3L_2368620_2368621 chr3L_2368013_2368425;chr3L_2368621_2370048 92.31 NA 92.31 96.55 NA NA 100.00 90.48 100.00 90.91 NA 80.00 NA 100.00 90.91 94.44 NA NA 92.31 91.30 NA 69.23 90.91 90.00 NA 100.00 92.31 100.00 94.74 100.00 93.33 95.45 92.31 92.86 87.50 94.74 NA NA 77.78 95.45 96.30 88.89 NA 90.00 93.10 97.50 NA 96.08 94.74 90.00 84.62 87.50 NA 87.50 91.67 90.00 90.00 95.12 K jcn_only_AD cryptocephal,noncoding_4181,I_chr2L_21311307_21311752,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21311033_21311752;chr2L_21311307_21311752;chr2L_21311532_21311752 chr2L_21311215_21311752 chr2L_21311753_21311852;chr2L_21310948_21311032 0.24 0.00 0.37 0.12 0.00 0.15 0.17 0.13 0.06 0.00 0.21 0.11 0.10 0.12 0.00 0.36 0.14 0.00 0.24 0.39 0.35 0.00 0.00 0.24 0.25 0.00 0.38 0.73 0.61 0.75 0.08 0.39 0.71 0.15 0.00 0.61 0.00 0.00 1.22 1.32 0.26 0.13 0.24 0.36 1.02 0.48 0.00 0.52 0.34 0.25 0.69 0.29 0.47 0.37 0.09 0.26 0.24 0.38 K jcn_only_AD akirin,I_chr3L_7363173_7364806,I_chr3L_7363177_7364806,I_chr3L_7363177_7364831,I_chr3L_7363211_7364831,I_chr3L_7363731_7364806,I_chr3L_7364126_7364806,RI_chr3L_7364737_7364806 chr3L + chr3L_7363211_7364831;chr3L_7363169_7364831 chr3L_7363177_7364831 chr3L_7364832_7364906;chr3L_7363111_7363168 2.27 NA NA NA NA NA NA 4.55 2.50 NA NA 0.00 0.00 0.00 NA 0.00 NA NA NA 6.45 NA 0.00 2.38 0.00 NA NA NA 0.00 NA 0.00 0.00 NA 3.08 8.00 NA NA 4.00 NA NA 2.78 NA 0.00 NA NA NA 4.76 NA NA 2.17 2.44 4.55 NA NA NA NA NA NA NA K jcn_only_AD RpS11,I_chr2R_8087545_8087625,I_chr2R_8087545_8087698,I_chr2R_8087747_8088193 chr2R - chr2R_8087545_8087698 chr2R_8087545_8087625 chr2R_8087476_8087544 98.84 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA 97.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette PMCA,I_chr4_371836_372509,I_chr4_373671_374568,I_chr4_374602_374976,I_chr4_376108_379519 chr4 - chr4_373217_374976 chr4_373217_374568;chr4_374605_374976 chr4_374569_374604 chr4_372807_373216;chr4_374977_375076 100.00 100.00 100.00 100.00 95.45 96.77 96.43 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 98.21 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 97.06 100.00 87.50 100.00 97.73 100.00 100.00 100.00 100.00 96.15 100.00 95.45 100.00 100.00 95.83 100.00 96.30 100.00 91.67 100.00 100.00 98.46 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 K alternative_acceptor CG42507,Trl,I_chr3L_14745733_14745798,CI_chr3L_14750431_14753667,I_chr3L_14754175_14754238 chr3L - chr3L_14744876_14745798 chr3L_14745733_14745798 chr3L_14745799_14745836;chr3L_14744367_14744875 60.77 60.00 42.86 55.56 NA 25.00 71.43 66.67 61.54 16.67 NA 77.78 100.00 62.50 66.67 59.09 NA 50.00 37.50 69.23 NA 44.44 83.33 50.00 66.67 42.86 50.00 66.67 75.00 60.00 42.86 66.67 33.33 70.00 50.00 88.89 75.00 50.00 50.00 100.00 33.33 42.86 50.00 75.00 NA 80.00 40.00 50.00 72.73 66.67 55.56 42.86 100.00 75.00 66.67 75.00 80.00 20.00 K intron_retention DhpD chr3R - chr3R_54711_54766 chr3R_54710_54711;chr3R_54766_54767 chr3R_54450_54710;chr3R_54767_54963 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 10.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 1.32 0.00 0.00 0.00 0.00 4.08 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor cnc,I_chr3R_19014852_19016738,I_chr3R_19046366_19046507,I_chr3R_19046619_19047567 chr3R - chr3R_19035606_19043600 chr3R_19035606_19035704 chr3R_19035330_19035605;chr3R_19043601_19044848 5.71 8.33 11.11 9.76 5.26 4.76 8.33 9.52 10.00 3.70 18.18 10.42 17.65 17.65 6.06 12.50 9.09 10.00 7.41 14.29 14.29 2.35 5.26 3.45 4.76 8.33 4.44 8.00 3.77 2.70 5.88 3.45 1.49 11.11 3.70 2.70 1.92 6.25 4.35 2.38 2.70 11.11 12.50 3.64 3.23 3.23 5.26 2.90 8.16 7.14 5.71 5.56 4.76 6.25 5.00 5.56 6.67 2.56 K intron_retention ci,CI_chr4_71240_71370 chr4 - chr4_72071_72124 chr4_72070_72071;chr4_72124_72125 chr4_71940_72070;chr4_72125_72577 100.00 NA NA 100.00 100.00 NA 93.33 95.24 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 95.65 NA NA 100.00 NA NA NA NA NA NA NA 88.89 NA NA 94.74 NA NA NA NA NA 100.00 NA 95.83 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA NA 91.67 NA NA NA K intron_retention quemao,I_chr3L_7341776_7344368 chr3L + chr3L_7345199_7345334 chr3L_7345198_7345199;chr3L_7345334_7345335 chr3L_7345071_7345198;chr3L_7345335_7345833 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 1.52 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor RI_chr3R_5165997_5180143,CG33936,noncoding_15544,I_chr3R_5167726_5180143,RI_chr3R_5183458_5183705 chr3R + chr3R_5167648_5167941;chr3R_5167726_5167941 chr3R_5167693_5167941 chr3R_5167942_5167998;chr3R_5167626_5167647 17.98 21.92 NA 18.82 NA 16.67 NA 10.37 10.06 11.54 25.00 21.53 13.48 11.58 36.05 15.25 25.00 24.66 17.95 19.27 NA NA 12.37 19.27 21.79 20.79 23.47 42.47 7.84 9.68 25.24 32.35 12.50 24.80 6.67 11.11 NA 32.91 15.00 10.23 11.11 18.00 6.85 9.58 25.00 7.41 NA 10.17 11.04 20.00 6.82 26.50 28.57 13.79 17.39 29.58 30.38 21.57 K alternative_donor CG34449,RI_chrX_9232665_9233022,noncoding_22771,RI_chrX_9249209_9250033,RI_chrX_9249212_9250019,RI_chrX_9249212_9250033,RI_chrX_9249212_9250244 chrX - chrX_9249209_9250147 chrX_9249209_9250033 chrX_9249112_9249208;chrX_9250148_9250168 100.00 100.00 NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA 100.00 K alternative_acceptor eIF4G,RI_chr4_945640_945708,I_chr4_945765_946199,I_chr4_948813_950447 chr4 - chr4_941826_945708 chr4_945640_945708 chr4_945709_945763;chr4_939529_941825 0.00 0.00 0.81 0.77 0.00 0.97 0.37 0.82 0.31 0.00 0.86 0.37 1.75 0.66 0.00 0.80 0.68 1.00 0.57 0.41 0.00 1.23 0.76 0.00 1.32 0.00 0.78 1.16 0.00 0.00 0.61 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.40 0.76 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 K intron_retention tra2,I_chr2R_10491279_10491488,REFI_chr2R_10491644_10491701 chr2R - chr2R_10491007_10491488 chr2R_10491006_10491007;chr2R_10491488_10491489 chr2R_10490853_10491006;chr2R_10491489_10491563 4.52 8.33 0.00 2.00 0.00 0.00 4.35 7.69 9.26 5.71 0.00 8.06 NA 0.00 0.00 10.71 5.88 0.00 9.52 5.63 0.00 11.11 3.64 10.53 5.71 12.50 2.86 9.68 12.24 0.00 0.00 0.00 3.57 NA 0.00 0.00 4.84 4.55 3.23 7.37 7.81 4.48 NA 9.09 3.03 5.63 6.38 0.00 6.94 0.00 6.82 12.00 9.30 3.77 0.00 4.35 4.55 1.98 K alternative_acceptor mub,RI_chr3L_21901021_21901163,I_chr3L_21908756_21909179 chr3L + chr3L_21908110_21908213 chr3L_21908110_21908201 chr3L_21907993_21908109;chr3L_21908214_21908295 60.52 55.00 62.50 71.43 52.38 68.75 58.62 55.56 60.42 72.73 53.33 70.37 50.00 60.87 50.00 54.05 50.00 63.64 99.31 70.00 52.63 68.18 50.00 62.50 70.00 73.33 66.67 NA 66.67 43.75 67.86 NA 52.63 60.61 77.78 68.75 58.82 69.23 63.16 61.54 NA 50.00 57.14 84.62 NA 56.25 58.33 57.14 63.16 45.45 45.45 71.43 NA 60.00 60.87 46.67 30.00 55.56 K intron_retention Rox8,I_chr3R_19872211_19872659,I_chr3R_19876189_19876240 chr3R - chr3R_19869850_19869918 chr3R_19869849_19869850;chr3R_19869918_19869919 chr3R_19869258_19869849;chr3R_19869919_19870012 4.11 5.31 5.06 10.19 5.00 2.90 5.48 2.30 4.23 6.49 6.78 3.85 1.56 3.28 4.76 3.70 0.00 2.80 2.94 4.08 2.99 5.00 4.09 4.90 3.00 2.56 6.67 9.90 5.10 4.76 4.69 6.35 5.95 3.12 4.11 4.35 2.53 2.61 4.12 6.25 7.55 3.61 3.57 5.36 3.97 4.04 2.52 6.90 3.15 2.50 4.55 0.00 2.73 4.55 2.08 4.44 2.60 7.69 K alternative_donor RpS19a chrX + chrX_16531961_16532265 chrX_16531983_16532265 chrX_16532266_16532336;chrX_16531912_16531960 2.22 2.95 2.46 1.47 3.24 2.58 7.35 1.90 3.60 1.85 3.36 3.52 5.85 5.29 2.23 5.66 2.54 3.60 2.71 1.97 3.70 1.25 1.47 2.50 2.22 2.98 3.51 1.81 2.70 1.04 2.92 1.26 0.99 2.20 2.13 1.43 7.32 1.27 1.68 0.65 1.88 1.88 3.59 1.18 1.08 1.68 2.86 1.41 2.16 4.65 1.64 3.08 0.80 1.67 1.95 4.40 4.71 1.20 K jcn_only_AA Trap1 chr2R - chr2R_2521435_2521515;chr2R_2521454_2521515 chr2R_2521438_2521515 chr2R_2521516_2521564;chr2R_2521152_2521434 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 1.10 2.74 0.00 0.00 0.59 3.33 0.00 0.00 0.00 1.92 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.79 0.00 0.00 0.76 0.00 0.00 K intron_retention HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13165623_13166434 chrX_13165622_13165623;chrX_13166434_13166435 chrX_13165515_13165622;chrX_13166435_13166489 14.98 NA NA 34.78 NA NA 11.76 19.44 9.68 NA NA 10.00 NA 26.32 13.33 18.92 NA NA 25.00 10.53 NA NA 21.43 NA NA NA NA NA 20.00 NA NA NA NA 24.14 22.22 NA NA NA NA 4.17 NA 21.43 0.00 8.33 NA NA NA 11.76 15.15 NA 5.00 NA NA NA 14.81 NA NA NA K alternative_donor CG8908,I_chr2R_16158045_16158109 chr2R + chr2R_16157528_16158109 chr2R_16158045_16158109 chr2R_16158110_16158209;chr2R_16156652_16157527 9.54 NA 7.14 NA NA NA 10.00 42.86 26.09 NA NA 18.75 9.09 16.67 14.29 10.00 NA 0.00 10.00 12.20 NA 4.76 6.67 10.00 NA NA NA NA NA NA 7.41 0.00 0.00 16.67 NA 0.00 NA NA 4.76 8.33 NA 7.14 NA NA 0.00 8.70 NA 0.00 14.29 5.56 7.69 NA NA 10.00 14.29 18.18 15.38 18.18 K intron_retention CG32016,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_974853_975114 chr4_974852_974853;chr4_975114_975115 chr4_974753_974852;chr4_975115_975489 0.00 0.00 0.00 9.52 NA 0.00 0.00 0.00 3.57 NA 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 3.70 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 4.08 0.00 0.00 NA NA 0.00 0.00 NA 2.86 0.00 0.00 NA 0.00 0.00 NA 2.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA K intron_retention Dsp1,I_chrX_16231287_16231413 chrX + chrX_16231043_16231118 chrX_16231042_16231043;chrX_16231118_16231119 chrX_16230884_16231042;chrX_16231119_16231282 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.02 0.00 0.00 0.00 0.00 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.43 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG33129,I_chr2L_10966410_10967142,noncoding_2515,I_chr2L_10966622_10967108 chr2L - chr2L_10966622_10968104 chr2L_10966621_10966622;chr2L_10968104_10968105 chr2L_10966522_10966621;chr2L_10968105_10968152 54.55 NA NA 70.00 NA NA NA NA 40.00 NA NA NA NA NA NA 54.55 NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA 70.00 NA NA NA NA NA NA 47.06 NA NA NA NA NA NA NA NA NA K alternative_donor CG42568,RI_chr2R_20046540_20046671,RI_chr2R_20046609_20046675,RI_chr2R_20046743_20046821 chr2R - chr2R_20046609_20046667;chr2R_20046609_20046671 chr2R_20046609_20046675 chr2R_20046509_20046608;chr2R_20046676_20046742 11.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 11.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG6656,CG33092 chr3R + chr3R_17702621_17702717 chr3R_17702620_17702621;chr3R_17702717_17702718 chr3R_17702483_17702620;chr3R_17702718_17703109 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 NA 0.00 2.90 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.74 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 NA 0.00 1.08 0.00 0.00 3.70 3.85 NA 0.00 0.00 0.00 0.00 NA 4.00 0.00 0.00 0.00 0.00 1.96 0.00 2.15 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 1.67 K jcn_only_AD CG1553 chr2R - chr2R_3692444_3692926 chr2R_3692444_3692605 chr2R_3691017_3692443;chr2R_3692927_3693071 4.00 NA NA NA NA NA NA 7.41 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 4.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 8.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD Karybeta3,I_chr3R_475924_476306,I_chr3R_476219_476306 chr3R + chr3R_475490_476306 chr3R_476219_476306 chr3R_476307_476406;chr3R_475064_475489 0.18 0.29 0.00 0.16 0.00 0.00 0.23 0.00 0.29 0.37 0.39 0.26 0.30 0.29 0.20 0.21 0.00 0.54 0.00 0.00 0.31 0.53 0.00 0.69 0.47 0.24 0.00 0.00 0.90 0.17 0.52 0.00 0.09 0.71 0.39 0.18 0.00 0.56 0.30 0.12 0.00 0.00 0.00 0.24 0.00 0.20 0.00 0.15 0.12 0.25 0.18 0.34 0.00 0.00 0.00 0.00 0.23 0.00 K alternative_acceptor CG10080 chr2R + chr2R_17518321_17518491 chr2R_17518321_17518377 chr2R_17518123_17518320;chr2R_17518492_17518801 100.00 100.00 100.00 100.00 100.00 98.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.33 100.00 99.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD foxo,I_chr3R_9907161_9907218 chr3R + chr3R_9905361_9905960 chr3R_9905381_9905960 chr3R_9905961_9906185;chr3R_9905068_9905360 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 K intron_retention Taf1 chr3R + chr3R_2480387_2480710 chr3R_2480386_2480387;chr3R_2480710_2480711 chr3R_2480192_2480386;chr3R_2480711_2480724 13.04 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 13.04 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N intron_retention CG12581,I_chr3R_9380_9438 chr3R + chr3R_272_369 chr3R_271_272;chr3R_369_370 chr3R_203_271;chr3R_370_509 100.00 100.00 100.00 100.00 100.00 NA 66.67 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA 100.00 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K jcn_only_AA NELF-A chr3R + chr3R_17052227_17052375 chr3R_17052227_17052372 chr3R_17050820_17052226;chr3R_17052376_17053536 96.97 95.95 93.62 95.77 97.30 97.37 92.00 97.83 98.82 95.65 100.00 97.73 94.87 100.00 96.00 97.37 100.00 100.00 96.97 98.56 100.00 96.08 95.62 97.56 98.53 96.77 97.65 95.31 92.93 96.70 94.29 93.62 91.94 98.18 98.61 100.00 96.34 98.02 97.40 92.92 96.30 100.00 100.00 95.92 95.83 95.79 96.30 94.06 95.24 99.02 92.71 95.52 98.18 98.28 96.97 96.77 98.11 98.46 K alternative_acceptor CG7766,I_chrX_8993495_8994545,I_chrX_8991338_8991387 chrX - chrX_8991547_8991788 chrX_8991553_8991788 chrX_8991789_8992040;chrX_8991388_8991546 70.00 70.83 65.22 73.08 66.67 70.59 69.70 79.17 70.00 56.25 81.25 77.78 50.00 58.82 68.42 68.18 72.22 70.00 75.00 66.18 78.95 69.23 60.00 73.33 68.97 57.14 71.88 78.95 62.07 63.64 76.67 60.87 82.05 70.00 75.00 63.16 70.97 81.82 74.42 67.31 69.23 73.17 80.00 65.85 74.29 62.50 73.33 86.67 73.68 63.16 69.05 64.00 80.00 70.37 64.52 71.43 62.79 75.68 K jcn_only_AD CG4572,FI_chr3R_15689914_15690042 chr3R - chr3R_15689914_15690042;chr3R_15689914_15690046 chr3R_15689914_15689997 chr3R_15689814_15689913;chr3R_15690047_15690114 7.59 16.42 7.69 4.55 0.00 9.88 10.47 3.18 7.34 4.00 3.70 9.02 3.30 8.97 8.47 4.76 6.25 10.61 0.97 3.28 4.35 16.22 6.32 2.56 3.57 4.48 12.00 8.00 8.70 14.81 7.32 6.45 10.00 7.64 3.03 NA 11.27 10.26 4.60 8.00 NA 5.43 4.29 4.76 7.55 11.36 10.61 3.85 9.24 7.59 9.09 10.42 13.89 13.04 5.26 7.41 7.96 10.00 K intron_retention Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_139558_140513 chr4_139557_139558;chr4_140513_140514 chr4_139464_139557;chr4_140514_140838 0.00 2.08 0.00 6.56 0.00 0.00 0.00 0.99 1.42 0.00 0.00 0.00 15.24 0.00 0.00 1.39 0.00 1.39 0.00 1.00 0.00 0.90 1.60 1.10 0.00 3.06 0.00 0.00 3.03 0.00 0.00 0.00 1.23 1.47 0.00 2.99 0.00 0.00 1.03 0.00 3.64 0.84 1.79 0.00 4.00 2.22 0.00 1.40 1.20 2.74 0.74 0.00 0.00 5.56 0.00 0.00 1.03 0.00 K cassette Cam,I_chr2R_8152423_8161270,R_chr2R_8156928_8161261,I_chr2R_8161049_8161270 chr2R + chr2R_8152423_8161270 chr2R_8152423_8156697;chr2R_8156941_8161270 chr2R_8156698_8156940 chr2R_8152323_8152422;chr2R_8161271_8161361 99.96 99.92 99.93 99.55 100.00 100.00 99.93 100.00 100.00 100.00 100.00 99.95 100.00 99.92 100.00 99.94 100.00 99.37 100.00 99.96 99.90 99.87 100.00 100.00 100.00 99.92 99.85 99.89 99.75 100.00 100.00 100.00 99.90 99.85 99.90 99.87 100.00 99.90 100.00 100.00 99.89 99.96 100.00 99.91 99.90 99.92 99.91 100.00 99.96 100.00 99.93 100.00 100.00 99.89 99.94 100.00 99.93 100.00 K alternative_donor CG5973,I_chr2L_7441485_7443583,I_chr2L_7443388_7443583 chr2L + chr2L_7440963_7443583;chr2L_7441757_7443583;chr2L_7440959_7443583 chr2L_7440852_7443583 chr2L_7443584_7443683;chr2L_7440710_7440851 10.47 11.76 8.70 11.90 12.50 15.00 17.50 15.52 8.60 33.33 3.39 14.58 21.43 24.00 20.59 7.14 13.79 11.76 3.33 9.00 4.35 11.11 4.55 10.00 0.00 14.81 6.67 0.00 16.67 0.00 25.00 10.00 0.00 13.51 14.29 7.69 4.55 0.00 0.00 5.88 NA 11.54 12.00 20.00 0.00 6.67 20.00 23.08 10.94 9.52 9.09 0.00 14.29 0.00 18.92 0.00 6.67 23.08 K jcn_only_AA CG4165,I_chrX_5317784_5317881,I_chrX_5321743_5321838 chrX + chrX_5317051_5317151 chrX_5317051_5317124 chrX_5316613_5317050;chrX_5317152_5317783 1.72 2.00 0.00 4.55 1.85 0.00 0.00 0.00 2.06 0.00 3.70 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 1.72 1.89 2.13 0.00 2.22 4.00 5.06 4.26 3.03 4.85 3.45 1.69 3.23 0.00 0.00 4.60 1.23 0.00 2.25 0.00 0.00 7.89 2.99 0.00 5.06 2.41 4.55 6.06 10.26 0.00 9.09 1.56 0.00 3.33 1.27 K intron_retention exba,I_chr3R_1425813_1426009,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1426031_1426736 chr3R_1426030_1426031;chr3R_1426736_1426737 chr3R_1426010_1426030;chr3R_1426737_1426835 65.16 66.67 NA NA NA NA 63.64 45.00 73.33 NA NA 56.25 30.77 NA NA 53.33 76.92 70.00 57.14 45.00 NA NA 75.00 NA NA NA NA NA NA NA 54.55 NA NA 81.25 NA NA NA NA NA NA NA 56.25 NA 66.67 NA 90.91 NA NA 75.00 92.31 60.00 66.67 NA NA 50.00 NA NA NA K cassette CG40263,F_chr2RHet_1265687_1293040,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1286572_1324445;chr2RHet_1265687_1324445 chr2RHet_1286572_1293055,chr2RHet_1265687_1293055;chr2RHet_1293175_1324445 chr2RHet_1293056_1293174 chr2RHet_1265587_1265686;chr2RHet_1324446_1324530 43.65 40.00 42.86 36.36 47.06 41.67 41.18 41.18 59.02 NA NA 40.54 60.00 47.83 56.00 42.50 62.50 57.14 45.71 56.76 NA NA 36.84 31.58 20.00 32.00 53.85 NA 30.77 57.14 50.00 NA 36.36 46.34 33.33 33.33 50.00 54.55 44.44 44.44 13.79 55.26 50.00 52.38 13.33 25.00 21.43 83.33 48.89 21.43 59.09 53.33 17.65 NA 65.22 26.32 25.00 15.62 K intron_retention CG15625 chr2L + chr2L_4890368_4890428 chr2L_4890367_4890368;chr2L_4890428_4890429 chr2L_4889995_4890367;chr2L_4890429_4891378 3.23 0.00 NA 5.56 NA 5.88 0.00 0.00 7.14 NA NA 4.76 NA NA NA 0.00 NA 0.00 NA 5.41 NA 10.00 0.00 6.06 0.00 NA 5.71 22.22 18.18 0.00 0.00 0.00 0.00 4.35 NA 7.14 10.00 0.00 0.00 0.00 0.00 3.23 NA 3.85 10.34 3.45 5.26 0.00 11.11 0.00 5.71 NA 4.00 0.00 0.00 0.00 3.70 0.00 K intron_retention CG4996,E_chr2R_13627553_13627643,I_chr2R_13629549_13629609 chr2R + chr2R_13629549_13629605 chr2R_13629548_13629549;chr2R_13629605_13629606 chr2R_13629449_13629548;chr2R_13629606_13629771 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 5.88 0.00 NA 0.00 4.55 0.00 NA 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA NA NA K jcn_only_AA CG34413,I_chr2R_20770882_20770948,F_chr2R_20770891_20770943,I_chr2R_20771136_20772048,I_chr2R_20773500_20774745 chr2R + chr2R_20770882_20770948 chr2R_20770882_20770943 chr2R_20770801_20770881;chr2R_20770949_20771043 99.51 99.44 99.51 100.00 98.81 100.00 99.51 99.06 98.90 100.00 99.19 100.00 99.35 99.39 98.93 99.42 100.00 100.00 100.00 99.13 98.53 100.00 99.64 98.84 99.43 98.71 99.53 100.00 100.00 99.04 97.16 98.82 99.46 99.60 100.00 99.42 99.71 100.00 99.57 99.73 99.12 99.41 100.00 100.00 99.34 100.00 98.74 100.00 99.35 100.00 98.03 100.00 99.21 100.00 98.99 100.00 99.42 100.00 K jcn_only_AD Tequila chr3L + chr3L_9068723_9069957 chr3L_9069896_9069957 chr3L_9069958_9070080 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 98.11 100.00 97.50 100.00 100.00 100.00 100.00 98.46 NA 100.00 100.00 100.00 94.59 100.00 NA NA 100.00 97.30 NA 95.65 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K alternative_acceptor CG9855,I_chr3R_223384_223429 chr3R - chr3R_223363_223429 chr3R_223384_223429 chr3R_223430_223529;chr3R_223284_223362 2.60 0.00 5.17 4.05 0.00 7.32 3.70 2.22 2.35 3.45 2.70 1.09 0.00 0.00 0.00 6.12 5.71 2.33 0.00 3.45 3.70 2.00 0.00 2.38 0.00 0.00 2.38 3.45 1.92 4.65 2.94 0.00 4.76 1.64 5.88 0.00 3.85 1.82 5.66 6.35 0.00 2.15 0.00 2.70 17.65 4.44 2.94 0.00 2.60 12.90 3.08 0.00 3.57 3.57 2.22 8.51 7.32 0.00 K intron_retention I_chr3R_22696095_22697413,Rb97D chr3R - chr3R_22699721_22699792 chr3R_22699720_22699721;chr3R_22699792_22699793 chr3R_22699582_22699720;chr3R_22699793_22700512 16.00 NA 0.00 22.73 NA 16.67 14.29 18.18 11.76 12.50 NA 16.67 NA NA 13.33 NA NA 13.33 NA 20.59 NA NA 23.08 20.83 13.33 NA 29.41 NA NA NA NA NA 14.29 16.00 NA NA 15.62 14.29 20.83 16.00 NA 14.81 NA NA 21.43 15.38 13.04 NA 26.32 14.29 17.65 NA NA 14.29 26.67 NA 30.77 NA K intron_retention CG12104 chr3L - chr3L_1601934_1602484 chr3L_1601933_1601934;chr3L_1602484_1602485 chr3L_1600942_1601933;chr3L_1602485_1602664 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 1.52 7.14 0.00 2.22 0.00 0.00 0.00 2.86 0.00 0.00 2.29 0.00 0.00 0.00 0.00 0.00 3.57 1.27 0.00 2.27 1.23 0.00 3.57 0.00 0.00 0.00 3.85 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 1.31 2.56 2.08 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor key,I_chr2R_20674247_20674291,I_chr2R_20674567_20674813,I_chr2R_20674654_20674897,RI_chr2R_20676692_20676888 chr2R - chr2R_20674228_20674291 chr2R_20674247_20674291 chr2R_20674292_20674391;chr2R_20674147_20674227 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.86 0.00 0.94 0.57 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 1.89 0.00 0.95 0.00 0.93 0.00 0.54 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA l(1)G0269,I_chrX_21192541_21192931 chrX - chrX_21193181_21194157 chrX_21193190_21194157 chrX_21194158_21194468;chrX_21192932_21193180 80.65 76.92 77.11 71.54 83.12 84.29 68.14 79.74 86.67 80.56 82.76 81.34 83.87 75.56 87.13 77.78 88.76 76.14 77.31 83.44 90.00 72.97 74.44 85.33 62.16 62.20 80.82 95.45 70.00 78.00 85.39 72.41 95.12 81.21 70.59 53.33 78.33 84.00 80.70 72.00 63.64 83.77 81.93 84.31 88.89 83.82 97.14 77.27 82.89 85.00 74.55 75.61 80.65 81.82 72.52 78.95 83.33 75.23 K intron_retention Cdk9 chr2R - chr2R_18524705_18524763 chr2R_18524704_18524705;chr2R_18524763_18524764 chr2R_18524473_18524704;chr2R_18524764_18524848 14.29 13.33 10.53 20.00 NA 10.53 30.00 16.67 14.71 15.38 NA 7.69 5.56 NA 13.79 12.50 NA 14.29 14.29 17.95 7.14 6.90 NA 12.50 NA 21.43 25.00 NA 19.05 9.09 42.55 6.90 10.81 13.79 19.05 NA NA NA 12.50 15.22 31.03 13.79 22.22 4.17 15.56 10.00 6.67 14.81 16.22 15.38 20.00 14.29 NA NA 7.14 NA 30.77 9.09 K alternative_acceptor CG5446,I_chr2L_12427370_12427468 chr2L - chr2L_12427370_12427468 chr2L_12427388_12427468 chr2L_12427469_12427568;chr2L_12427270_12427369 99.05 99.25 99.12 99.46 98.75 98.91 98.71 99.43 99.61 98.78 100.00 99.44 100.00 98.02 100.00 97.47 98.77 100.00 100.00 98.68 99.10 98.75 98.94 99.34 98.96 100.00 97.48 98.96 96.26 99.17 96.67 96.90 99.34 100.00 98.95 98.97 98.55 99.29 99.38 98.96 99.24 99.05 100.00 99.37 98.62 99.45 98.73 98.26 99.51 99.26 98.61 98.81 99.27 99.35 99.19 98.72 98.27 98.85 K jcn_only_AD CG3287,I_chr2R_2698891_2699406,I_chr2R_2700203_2700285 chr2R + chr2R_2698681_2699406;chr2R_2698891_2699406;chr2R_2698654_2699406 chr2R_2699349_2699406 chr2R_2699407_2699506;chr2R_2698533_2698653 0.93 1.32 2.13 0.74 6.00 0.00 0.00 0.61 2.04 3.28 1.39 0.52 0.00 0.00 0.00 0.62 0.00 1.30 2.61 0.94 0.00 2.80 0.00 0.98 3.85 1.00 3.88 1.37 2.91 1.02 3.05 0.00 0.00 0.00 0.84 0.94 2.94 0.00 4.41 0.47 0.00 0.65 0.00 0.93 2.17 0.75 1.09 0.46 0.56 1.14 1.45 2.38 1.41 0.00 0.00 0.00 1.79 0.00 K intron_retention CG3386,CG3344,CG32483,Vti1 chr3L - chr3L_686287_686341 chr3L_686286_686287;chr3L_686341_686342 chr3L_685871_686286;chr3L_686342_686527 100.00 100.00 100.00 NA NA NA 100.00 NA 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 100.00 NA 94.12 100.00 90.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 NA 91.67 100.00 100.00 92.86 94.44 100.00 100.00 NA 100.00 88.89 100.00 NA 100.00 100.00 100.00 100.00 88.89 NA 100.00 NA NA 100.00 NA K intron_retention vap,RI_chrX_15897976_15899352,I_chrX_15897976_15899654,I_chrX_15898011_15899654,I_chrX_15898427_15899017,RI_chrX_15898427_15899654,RI_chrX_15899237_15899352,I_chrX_15899237_15899654 chrX - chrX_15898427_15899352 chrX_15898426_15898427;chrX_15899352_15899353 chrX_15898361_15898426;chrX_15899353_15899365 93.84 92.86 81.82 94.44 NA 93.33 100.00 90.00 93.94 NA 90.91 95.45 100.00 100.00 NA 96.30 93.33 NA 93.75 96.30 100.00 91.67 94.44 100.00 90.00 90.91 93.75 NA 92.31 88.89 94.74 NA 94.44 100.00 100.00 88.24 88.89 NA 88.89 83.33 88.89 96.15 100.00 100.00 87.50 94.44 100.00 92.00 96.97 90.91 84.21 90.00 100.00 NA 94.44 NA 90.00 94.74 K alternative_donor Syx4,I_chrX_2635555_2635621,I_chrX_2636831_2636971 chrX - chrX_2633579_2633652;chrX_2633579_2635455 chrX_2633579_2633742 chrX_2633330_2633578;chrX_2635456_2635529 9.26 9.26 7.94 8.47 7.32 10.42 11.29 10.20 12.15 30.00 7.27 7.87 18.52 14.00 9.52 11.25 10.87 9.80 9.23 8.41 11.11 5.26 6.67 11.63 8.00 9.76 7.14 10.53 7.69 5.71 9.09 7.69 5.17 8.66 10.87 10.00 8.11 11.76 7.84 8.57 5.00 9.82 9.80 6.90 5.13 9.38 13.79 7.02 13.59 8.06 13.04 10.71 16.67 13.33 8.86 10.42 8.89 9.09 K intron_retention CG6091,E_chr3L_11600447_11600553 chr3L - chr3L_11599299_11599356 chr3L_11599298_11599299;chr3L_11599356_11599357 chr3L_11598527_11599298;chr3L_11599357_11599571 0.00 0.00 5.00 1.54 0.00 0.00 4.62 4.76 0.00 0.00 0.00 3.23 0.00 5.26 2.13 0.00 0.00 0.00 2.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 12.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.45 0.00 NA 2.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Amun,I_chrX_11607839_11608272,I_chrX_11607842_11608105,I_chrX_11607842_11608125,RI_chrX_11607842_11608272 chrX - chrX_11607842_11608590 chrX_11607842_11608507 chrX_11607788_11607841;chrX_11608591_11608810 50.20 57.14 41.38 58.00 47.06 48.28 51.22 61.67 46.15 47.62 46.43 54.84 56.00 45.83 59.09 52.50 60.00 52.38 37.93 36.05 31.82 35.29 75.00 64.29 58.33 76.00 72.41 NA 36.51 29.69 39.47 18.75 28.04 51.67 22.58 46.15 65.31 75.00 70.00 24.05 30.95 49.18 58.06 30.61 29.58 48.15 74.07 29.17 59.42 54.29 57.69 68.18 40.00 79.17 49.06 69.70 65.62 24.02 K intron_retention Bsg25D chr2L - chr2L_5273098_5273160 chr2L_5273097_5273098;chr2L_5273160_5273161 chr2L_5272986_5273097;chr2L_5273161_5273554 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA NA 9.09 NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 3.85 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA NA 0.00 0.00 0.00 K jcn_only_AD I_chr3R_17177101_17200781,mod(mdg4),RI_chr3R_17178359_17178534 chr3R - chr3R_17178359_17200781 chr3R_17178359_17178534 chr3R_17178259_17178358;chr3R_17200782_17200881 82.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 82.14 K intron_retention mmd chrX - chrX_15852624_15856018 chrX_15852623_15852624;chrX_15856018_15856019 chrX_15852581_15852623;chrX_15856019_15856024 81.75 NA NA NA NA NA NA NA 77.78 NA NA NA 100.00 NA NA NA NA NA NA 76.47 NA NA NA NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA 77.78 NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA N jcn_only_AD He,I_chr2L_13975880_13975977 chr2L - chr2L_13972612_13972790 chr2L_13972612_13972675 chr2L_13972094_13972611;chr2L_13972791_13972964 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.77 0.97 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Cpsf100,Pkc98E chr3R + chr3R_24860534_24860596 chr3R_24860534_24860592 chr3R_24860465_24860533;chr3R_24860597_24862784 100.00 100.00 97.56 100.00 100.00 100.00 97.22 100.00 98.72 NA 100.00 100.00 100.00 97.06 100.00 100.00 100.00 98.04 100.00 96.97 98.00 100.00 97.67 100.00 NA 100.00 100.00 98.04 95.65 100.00 100.00 100.00 100.00 98.72 100.00 100.00 97.62 100.00 100.00 100.00 100.00 99.00 100.00 95.83 96.67 NA 100.00 100.00 98.85 100.00 97.56 100.00 100.00 NA 98.36 100.00 100.00 100.00 K intron_retention CG5004,E_chrX_17024712_17024996 chrX + chrX_17024604_17024996 chrX_17024603_17024604;chrX_17024996_17024997 chrX_17024453_17024603;chrX_17024997_17025096 34.62 46.15 30.95 33.33 55.00 41.38 39.06 40.85 44.44 15.38 33.33 32.81 30.30 41.03 40.48 38.89 43.75 31.43 42.86 32.61 23.08 22.02 31.03 35.29 32.26 38.89 29.27 56.25 28.57 25.00 34.78 36.11 15.84 37.93 26.67 26.67 33.33 28.57 25.00 33.33 28.00 43.24 54.84 42.86 28.21 32.65 44.44 25.76 37.88 51.43 50.98 34.62 21.21 50.00 41.86 37.50 34.88 27.16 K jcn_only_AA CG17494 chr2L + chr2L_22477415_22477476 chr2L_22477415_22477473 chr2L_22476854_22477414;chr2L_22477477_22478491 96.77 98.84 100.00 96.25 98.51 96.10 97.72 98.56 97.52 96.67 96.61 98.62 94.79 100.00 96.43 96.45 98.06 98.48 97.74 97.02 100.00 87.18 97.98 96.51 96.30 94.92 97.94 94.20 96.55 97.73 97.92 97.56 97.22 95.77 97.44 93.02 97.01 97.78 96.08 96.08 100.00 98.10 95.24 96.77 96.00 91.53 96.61 100.00 95.98 96.25 96.04 100.00 97.87 92.73 96.58 97.10 95.69 96.63 K intron_retention CG12499 chr3R - chr3R_18271809_18271860 chr3R_18271808_18271809;chr3R_18271860_18271861 chr3R_18265873_18271808;chr3R_18271861_18272364 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 K intron_retention CG5798 chr3R + chr3R_16961540_16961594 chr3R_16961539_16961540;chr3R_16961594_16961595 chr3R_16961057_16961539;chr3R_16961595_16962038 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette bip2,RI_chr4_481674_482028,RI_chr4_481674_487126,RI_chr4_482358_482702,RI_chr4_483128_487126,RI_chr4_483144_483680,RI_chr4_486609_487126 chr4 - chr4_481674_487126 chr4_481674_482130;chr4_482955_483013;chr4_483128_483680;chr4_485367_485422;chr4_485942_487126 chr4_482131_482954;chr4_483014_483127;chr4_483681_485366;chr4_485423_485941 chr4_481574_481673;chr4_487127_487226 100.00 87.50 100.00 92.31 83.33 100.00 100.00 100.00 96.55 100.00 100.00 90.00 100.00 100.00 90.91 87.50 91.67 83.33 93.33 90.00 100.00 100.00 100.00 88.89 100.00 100.00 87.50 100.00 83.33 100.00 76.47 100.00 80.00 96.00 100.00 100.00 100.00 100.00 100.00 83.33 80.00 100.00 91.67 100.00 100.00 100.00 85.71 100.00 100.00 100.00 91.67 83.33 80.00 100.00 100.00 100.00 75.00 100.00 K intron_retention Actn chrX - chrX_1919733_1919807 chrX_1919732_1919733;chrX_1919807_1919808 chrX_1919221_1919732;chrX_1919808_1920942 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 3.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.27 0.00 1.54 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 1.45 0.00 0.00 K cassette CG32982,I_chr2L_9127467_9148754,EF_chr2L_9135385_9148841,F_chr2L_9149162_9154658 chr2L + chr2L_9127467_9154658;chr2L_9127467_9148754 chr2L_9127467_9135117;chr2L_9135385_9148754,chr2L_9135385_9154658 chr2L_9135118_9135384 chr2L_9127456_9127466;chr2L_9154659_9154758 16.67 15.38 13.64 19.23 10.53 25.00 13.04 13.79 17.50 2.27 18.18 37.21 22.22 18.75 12.50 36.84 18.18 8.33 20.00 17.65 16.67 23.36 20.69 13.89 13.16 26.32 12.73 23.08 27.14 13.33 16.00 12.20 17.86 22.58 27.78 32.20 12.82 14.29 16.92 13.04 21.43 14.58 9.52 19.18 14.29 15.25 15.38 12.24 20.59 10.00 21.28 17.24 16.67 12.90 22.22 14.71 12.90 10.81 K jcn_only_AD opa1-like,I_chr2R_10119470_10120234,I_chr2R_10121848_10121900,I_chr2R_10122128_10122197,I_chr2R_10122334_10122393 chr2R - chr2R_10119470_10120234;chr2R_10119470_10120220 chr2R_10119470_10120229 chr2R_10119370_10119469;chr2R_10120235_10120334 64.53 60.43 64.81 55.56 61.36 56.12 56.00 58.47 65.00 79.17 50.00 66.67 75.24 72.50 66.91 60.00 67.33 67.41 63.78 64.53 60.71 61.29 67.20 67.96 63.91 59.68 51.19 61.00 58.99 72.28 66.27 64.20 64.42 66.67 68.13 53.33 60.00 56.52 61.03 29.32 56.49 65.34 76.85 66.47 72.09 68.07 65.88 67.61 70.32 67.02 68.97 60.34 65.43 55.45 67.11 57.24 61.44 77.65 K jcn_only_AA Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2629527_2629921 chr3L_2629585_2629921 chr3L_2629922_2630021;chr3L_2629427_2629526 8.70 NA NA NA NA NA NA 8.70 15.00 NA NA NA NA NA 0.00 3.12 NA NA NA 7.89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.33 NA NA NA NA NA 11.54 8.82 NA NA NA NA NA 15.00 NA NA NA K jcn_only_AA Gbeta13F,I_chrX_15754284_15755167,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15754284_15755172;chrX_15754284_15755148;chrX_15754284_15755021;chrX_15754284_15755184;chrX_15754284_15755409;chrX_15754284_15755256;chrX_15754284_15755416;chrX_15754284_15755268 chrX_15754284_15754777 chrX_15754256_15754283 14.10 5.93 14.50 5.07 9.18 15.04 8.84 10.29 9.47 22.39 14.10 30.12 26.61 11.33 20.34 7.96 8.26 15.05 14.19 21.99 12.79 6.67 13.02 22.52 11.22 17.50 8.66 13.56 8.96 19.00 15.73 19.30 23.17 16.15 21.05 32.41 18.18 8.70 13.04 19.73 16.22 12.96 16.41 6.63 7.69 17.39 12.00 20.91 17.61 8.93 14.89 13.61 5.26 10.71 15.48 15.31 5.93 11.11 K jcn_only_AD CG18766,I_chr3R_23069667_23070256,I_chr3R_23069667_23070318,RI_chr3R_23069667_23070361,I_chr3R_23069667_23070365 chr3R - chr3R_23069667_23070738;chr3R_23069667_23070911 chr3R_23069667_23070732 chr3R_23069567_23069666;chr3R_23070912_23070951 5.97 5.88 6.17 1.67 11.76 7.55 8.66 7.83 5.45 4.00 0.00 5.08 1.45 6.10 12.33 10.00 2.94 7.69 8.11 8.18 0.00 2.22 2.50 7.84 1.89 0.00 7.04 0.00 6.67 4.00 2.30 10.42 10.29 9.84 8.62 9.23 4.92 6.82 7.84 5.71 6.25 4.80 8.57 11.48 12.50 4.67 5.97 9.23 3.65 3.95 8.43 4.35 5.13 10.53 5.62 4.11 5.33 3.45 K intron_retention scra,EI_chr2R_3480349_3480405 chr2R + chr2R_3480339_3480405 chr2R_3480338_3480339;chr2R_3480405_3480406 chr2R_3480249_3480338;chr2R_3480406_3480505 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor spir,I_chr2L_20334199_20334626,I_chr2L_20336550_20339058 chr2L + chr2L_20336405_20336466;chr2L_20336405_20336463 chr2L_20336405_20336469 chr2L_20336338_20336404;chr2L_20336470_20336529 13.58 22.86 9.09 17.78 4.17 9.09 9.26 12.28 14.29 11.54 10.34 10.53 15.38 8.00 16.22 13.64 12.90 16.67 17.95 8.06 16.00 15.75 16.36 8.51 4.17 14.71 11.63 21.05 13.79 8.33 13.64 17.86 20.69 15.00 18.92 10.81 14.00 16.13 14.00 11.59 18.00 13.58 10.34 14.29 7.69 7.84 10.81 14.06 14.29 9.43 9.09 11.11 3.70 6.06 16.67 13.51 13.64 10.34 K intron_retention msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585733_2586402 chr3L_2585732_2585733;chr3L_2586402_2586403 chr3L_2585639_2585732;chr3L_2586403_2586502 77.50 70.00 65.22 86.96 NA 57.14 85.71 72.73 83.33 NA 76.47 82.76 78.57 78.57 90.48 75.00 66.67 77.78 84.21 68.97 71.43 79.17 64.71 81.25 100.00 85.00 86.67 NA 80.77 78.57 76.47 63.64 61.90 78.12 81.82 66.67 66.67 72.73 84.62 76.67 78.57 81.58 65.00 93.75 NA 80.00 75.00 65.62 77.50 NA 72.73 88.89 60.00 NA 72.22 NA NA 69.23 K intron_retention GlcAT-P,I_chr3L_11172482_11172633 chr3L - chr3L_11172817_11175254 chr3L_11172816_11172817;chr3L_11175254_11175255 chr3L_11172634_11172816;chr3L_11175255_11175322 27.78 25.00 NA NA NA NA NA 36.84 45.45 NA NA 24.32 NA NA 20.00 20.00 NA NA NA 28.57 NA 19.23 17.65 NA NA 30.00 33.33 NA NA NA NA NA 35.71 27.78 NA 24.14 28.57 28.57 33.33 34.62 NA 15.15 NA NA 30.77 33.33 NA 23.53 21.05 NA 42.86 NA 25.00 NA 22.22 NA NA 12.50 K intron_retention CG8360 chr2L + chr2L_8213530_8213780 chr2L_8213529_8213530;chr2L_8213780_8213781 chr2L_8213492_8213529;chr2L_8213781_8213827 0.00 0.00 2.82 4.11 2.13 0.00 0.00 2.63 0.00 0.00 0.00 2.40 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.87 0.00 5.08 0.00 0.00 1.67 0.00 1.96 1.37 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 3.45 0.00 0.00 0.00 0.00 0.00 2.35 0.00 1.28 0.00 2.15 4.65 0.00 1.18 0.00 0.00 0.00 3.33 K alternative_donor CG40228,noncoding_14406,RI_chr3LHet_2190419_2190470 chr3LHet - chr3LHet_2190419_2190563;chr3LHet_2190419_2190548;chr3LHet_2190419_2190470;chr3LHet_2190419_2190561 chr3LHet_2190419_2190556 chr3LHet_2190319_2190418;chr3LHet_2190564_2190570 0.00 0.00 0.00 3.95 0.00 0.00 0.00 1.18 2.08 NA 0.00 1.59 0.00 2.22 0.00 2.31 0.00 3.85 6.52 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 2.47 2.33 2.94 0.00 0.00 0.00 0.00 3.85 1.96 2.94 6.67 0.00 3.61 2.86 2.33 2.86 4.76 0.00 0.00 0.00 0.00 2.63 0.00 4.17 3.12 K cassette mbf1,RI_chr3L_16568077_16568816 chr3L + chr3L_16568077_16568816 chr3L_16568077_16568286;chr3L_16568448_16568816 chr3L_16568287_16568447 chr3L_16567977_16568076;chr3L_16568817_16568916 100.00 100.00 100.00 99.44 99.47 100.00 99.42 99.69 100.00 100.00 100.00 100.00 100.00 99.41 100.00 99.58 100.00 100.00 99.43 99.83 100.00 99.67 100.00 100.00 99.69 99.49 99.78 100.00 99.78 100.00 100.00 100.00 100.00 100.00 99.62 99.72 100.00 100.00 99.81 100.00 100.00 100.00 100.00 100.00 99.80 99.82 100.00 100.00 100.00 99.78 99.77 99.63 100.00 99.76 99.60 100.00 100.00 100.00 K intron_retention Flo,I_chr2R_11456012_11456623 chr2R - chr2R_11454678_11454747 chr2R_11454677_11454678;chr2R_11454747_11454748 chr2R_11454609_11454677;chr2R_11454748_11454816 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 K intron_retention CG31908 chr2L - chr2L_7026982_7027193 chr2L_7026981_7026982;chr2L_7027193_7027194 chr2L_7026724_7026981;chr2L_7027194_7027261 98.08 96.15 100.00 100.00 97.37 100.00 100.00 98.80 99.30 93.10 97.96 98.84 97.22 97.78 97.78 98.88 100.00 96.97 100.00 98.90 100.00 95.35 98.15 98.41 100.00 100.00 100.00 96.55 100.00 90.24 100.00 97.14 97.40 100.00 100.00 97.67 97.62 100.00 97.44 96.72 97.87 100.00 100.00 92.86 88.89 96.88 88.52 98.08 98.91 95.59 98.31 100.00 88.89 97.06 100.00 96.49 96.83 88.71 K cassette woc,I_chr3R_23089174_23089695,I_chr3R_23096096_23096561 chr3R - chr3R_23087666_23087948;chr3R_23087663_23087948 chr3R_23087663_23087837,chr3R_23087666_23087837;chr3R_23087883_23087948 chr3R_23087838_23087882 chr3R_23086219_23087662;chr3R_23087949_23088209 8.74 12.36 12.39 11.19 7.78 8.77 5.88 9.93 7.36 7.56 4.65 8.63 9.21 10.45 11.20 9.09 11.69 6.42 9.86 8.70 5.94 7.33 7.67 9.48 5.56 3.66 5.73 6.14 8.09 7.87 7.61 11.65 9.19 8.38 6.67 2.40 10.16 13.04 9.38 11.43 5.65 9.02 8.00 18.38 7.81 9.03 11.24 8.11 7.95 7.91 10.42 8.74 8.40 11.45 9.65 12.07 9.48 9.66 K intron_retention CG8451 chr2L - chr2L_8200961_8201016 chr2L_8200960_8200961;chr2L_8201016_8201017 chr2L_8200706_8200960;chr2L_8201017_8201708 0.00 2.70 0.00 0.00 4.17 0.00 4.76 2.00 5.33 0.00 0.00 0.00 4.35 0.00 0.00 6.38 0.00 0.00 2.27 3.70 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 6.67 10.53 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 5.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Ucrh,CREFI_chr3LHet_606442_607073 chr3LHet + chr3LHet_606275_606349 chr3LHet_606275_606333 chr3LHet_606198_606274;chr3LHet_606350_606441 5.42 3.17 7.77 6.87 6.17 3.92 3.37 6.47 5.32 3.33 4.55 6.29 4.93 5.13 7.25 6.53 6.74 2.25 7.18 0.72 0.00 3.12 3.57 10.81 6.90 9.57 8.82 NA 4.88 9.52 4.11 4.69 1.85 7.37 NA 4.55 5.88 0.00 0.00 10.34 6.94 5.70 8.87 10.00 13.11 7.29 0.00 5.56 4.60 4.92 NA 0.00 NA NA 5.52 1.72 0.00 5.88 K cassette CtBP chr3R + chr3R_8847365_8851110 chr3R_8847365_8850521;chr3R_8850752_8851110 chr3R_8850522_8850751 chr3R_8847142_8847364;chr3R_8851111_8851987 7.55 4.17 7.69 8.33 5.56 8.33 5.56 16.67 9.09 6.67 NA 15.38 5.56 5.88 6.67 NA NA 12.50 NA 9.38 NA 8.89 5.71 7.32 8.33 13.33 4.76 3.45 9.68 4.55 16.67 12.50 17.65 9.09 6.67 5.56 4.44 7.14 9.68 7.69 5.56 8.70 16.67 12.00 10.00 4.35 4.17 18.18 7.41 9.09 4.35 5.88 6.25 10.53 6.67 5.88 6.06 12.50 K intron_retention CG11737,I_chr3R_4344114_4344207 chr3R + chr3R_4344114_4345327 chr3R_4344113_4344114;chr3R_4345327_4345328 chr3R_4344014_4344113;chr3R_4345328_4346271 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 5.56 0.00 0.00 3.45 NA 5.56 12.50 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 1.92 NA 0.00 0.00 0.00 0.00 6.67 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K alternative_acceptor CG15445,REI_chrX_20988432_20988485,RI_chrX_20988432_20988489,REI_chrX_20988439_20988489,I_chrX_20988439_20988552 chrX + chrX_20988439_20988489 chrX_20988439_20988485 chrX_20988339_20988438;chrX_20988490_20988585 87.50 100.00 83.33 83.33 90.91 92.31 76.47 95.24 85.19 NA 90.00 84.62 90.91 92.31 84.21 81.82 90.00 85.71 93.33 79.31 90.00 70.59 90.91 86.67 92.31 100.00 95.24 94.44 88.89 65.00 85.71 84.62 86.67 94.74 90.91 100.00 88.89 90.00 88.24 80.95 87.50 79.17 75.00 80.00 76.92 65.00 90.91 64.00 77.42 84.62 100.00 90.00 NA 75.00 92.31 91.67 85.71 68.57 K intron_retention RI_chrX_1796525_1796585,mip130,CG3573,I_chrX_1820956_1821011,CG11596 chrX + chrX_1818823_1818883 chrX_1818822_1818823;chrX_1818883_1818884 chrX_1818565_1818822;chrX_1818884_1819069 0.00 0.00 0.00 3.49 0.00 0.00 0.00 0.00 2.84 0.00 0.00 0.00 0.00 0.00 3.61 0.00 0.00 2.44 1.33 2.26 0.00 0.00 1.59 2.08 0.00 1.82 4.17 0.00 2.17 0.00 0.00 0.00 1.39 0.00 0.00 0.00 2.70 0.00 1.37 0.00 0.00 2.26 0.00 0.00 0.00 0.79 0.00 0.00 2.52 0.00 0.00 6.45 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Vha100-1,I_chr3R_24958227_24960770,RI_chr3R_24959152_24959582,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24958227_24959582 chr3R_24958226_24958227;chr3R_24959582_24959583 chr3R_24958127_24958226;chr3R_24959583_24959682 7.27 1.85 12.20 18.92 4.88 6.82 13.21 8.47 10.75 11.54 9.09 9.09 25.00 0.00 7.32 2.63 3.57 5.26 NA 4.04 5.00 17.50 7.46 4.23 9.09 2.70 6.82 10.53 8.00 6.52 5.71 9.52 7.69 11.25 6.45 10.53 2.50 4.17 3.28 7.25 12.50 7.29 5.26 13.64 2.56 6.52 6.12 13.16 6.85 3.12 8.20 15.15 9.38 8.33 7.84 0.00 0.00 5.88 K intron_retention PNUTS,I_chr2L_870553_871317 chr2L + chr2L_871577_871640 chr2L_871576_871577;chr2L_871640_871641 chr2L_871353_871576;chr2L_871641_871738 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG1399,I_chr2R_3574133_3574191 chr2R - chr2R_3565240_3565323;chr2R_3565240_3565310;chr2R_3565240_3566074;chr2R_3565240_3565403;chr2R_3565240_3565374 chr2R_3565240_3565502 chr2R_3564840_3565239 8.70 21.21 11.54 10.00 16.13 3.12 3.08 15.22 1.52 2.04 3.77 2.44 4.76 12.90 13.51 19.44 16.67 19.44 5.13 10.26 7.55 0.00 2.50 14.00 0.00 3.85 1.67 8.57 10.71 15.25 5.26 8.89 8.70 9.62 2.63 3.85 7.55 12.12 8.70 10.42 6.78 5.45 14.81 15.56 7.69 5.08 2.38 13.73 9.09 4.35 6.56 12.82 14.81 14.63 4.55 5.00 21.43 33.78 K jcn_only_AD CG11163,I_chr2R_1666219_1669711 chr2R - chr2R_1666219_1670219;chr2R_1666219_1669803;chr2R_1666219_1670325;chr2R_1666219_1670281 chr2R_1666219_1670203 chr2R_1666119_1666218;chr2R_1670326_1670328 12.35 4.55 18.92 5.00 0.00 32.00 15.56 12.73 7.27 16.00 5.00 8.33 5.26 6.06 16.13 20.90 15.79 8.00 15.15 18.06 19.05 NA 3.85 17.39 NA 21.43 11.11 NA 9.68 13.04 12.77 22.58 0.00 13.64 17.39 5.00 4.76 NA NA 7.41 12.12 12.28 19.35 6.52 4.76 12.96 NA 10.81 12.35 9.52 14.29 13.64 23.81 NA 13.16 NA 4.76 10.39 K jcn_only_AD CG8839,I_chr2R_8229288_8229488,I_chr2R_8229288_8231538 chr2R - chr2R_8229288_8232025;chr2R_8229288_8231964;chr2R_8229288_8231966 chr2R_8229288_8231968 chr2R_8229188_8229287;chr2R_8232026_8232112 6.34 5.94 8.37 5.84 5.47 7.28 4.96 2.43 3.79 4.49 3.31 6.63 7.29 6.63 6.44 8.10 5.00 6.36 3.85 5.98 7.74 2.72 4.72 4.24 10.00 3.69 10.98 4.76 10.69 6.17 5.42 7.56 7.81 6.36 9.80 6.25 13.08 7.59 6.34 6.67 7.21 4.76 9.05 8.33 8.00 4.38 2.27 5.34 6.47 7.46 9.17 10.00 1.96 0.00 4.40 4.35 5.26 8.36 N jcn_only_AA wun2,I_chr2R_5304606_5304660 chr2R + chr2R_5304841_5304916 chr2R_5304841_5304899 chr2R_5304772_5304840;chr2R_5304917_5305073 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 86.01 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG31224,Cpsf73 chr3R - chr3R_14487477_14487537 chr3R_14487476_14487477;chr3R_14487537_14487538 chr3R_14487034_14487476;chr3R_14487538_14488829 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette Gli chr2L - chr2L_15759846_15762568 chr2L_15759846_15760209;chr2L_15760343_15760401;chr2L_15760575_15762568 chr2L_15760210_15760342;chr2L_15760402_15760574 chr2L_15759743_15759845;chr2L_15762569_15762636 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 53.85 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 75.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 NA K intron_retention Nhe3,I_chr2L_6680525_6680670 chr2L - chr2L_6680115_6680174 chr2L_6680114_6680115;chr2L_6680174_6680175 chr2L_6679986_6680114;chr2L_6680175_6680283 1.14 2.04 0.00 0.00 4.35 0.00 0.00 0.00 2.53 0.00 8.33 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.88 1.35 2.44 2.27 0.00 1.14 7.50 33.33 0.00 0.00 5.88 0.00 2.08 4.08 1.82 3.61 1.72 0.00 1.35 4.35 4.60 0.00 3.33 0.00 3.90 0.00 0.00 6.25 3.33 0.00 5.41 0.00 3.03 2.94 0.00 1.49 0.00 K intron_retention CG4699,alpha-Man-IIb,chr3R_11636330_11636555.0,chr3R_11637375_11637620.0,CG4576 chr3R + chr3R_11630328_11644637 chr3R_11630327_11630328;chr3R_11644637_11644638 chr3R_11630006_11630327;chr3R_11644638_11645146 7.69 NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA 5.26 NA NA NA NA NA NA NA NA NA NA K jcn_only_AA mbc,I_chr3R_19615584_19615649,I_chr3R_19625220_19625288 chr3R + chr3R_19625220_19625288 chr3R_19625220_19625285 chr3R_19625120_19625219;chr3R_19625289_19625372 98.96 96.70 98.61 99.44 94.29 98.51 99.24 99.24 99.45 100.00 98.73 99.35 98.70 98.80 100.00 98.96 99.03 100.00 98.94 98.82 97.92 98.25 97.89 98.03 98.85 98.36 98.45 100.00 100.00 100.00 98.75 100.00 98.11 98.36 100.00 97.37 100.00 98.44 100.00 99.22 98.48 96.72 98.46 99.03 100.00 100.00 100.00 100.00 99.25 97.78 97.87 100.00 100.00 100.00 100.00 98.39 100.00 96.43 K mutually_exclusive par-1,EFI_chr2R_15361473_15362032,RI_chr2R_15361473_15362035,I_chr2R_15361473_15366246,I_chr2R_15362147_15365120,F_chr2R_15362147_15365138,I_chr2R_15362147_15365165,RI_chr2R_15363358_15365120,I_chr2R_15363358_15366246,I_chr2R_15365210_15370456 chr2R + chr2R_15361473_15366256,chr2R_15366371_15370456 chr2R_15361473_15365165,chr2R_15365210_15370456 chr2R_15366257_15366370 chr2R_15365166_15365209 chr2R_15361373_15361472;chr2R_15370457_15370556 3.23 4.55 2.94 0.00 3.45 0.00 3.45 0.00 1.19 0.00 0.00 2.27 7.14 0.00 3.45 0.00 0.00 0.00 4.76 1.64 4.00 13.33 2.56 2.63 10.00 3.23 4.00 4.55 15.38 3.57 4.00 0.00 6.67 2.17 5.56 4.55 2.70 4.17 2.70 3.70 11.11 2.04 0.00 4.17 5.56 4.76 3.57 12.50 1.79 3.23 2.94 0.00 5.56 6.67 2.70 5.26 2.86 0.00 K mutually_exclusive CG5674 chr2L + chr2L_17963606_17971871,chr2L_17972019_17972262 chr2L_17963606_17969371,chr2L_17969519_17972262 chr2L_17971872_17972018 chr2L_17969372_17969518 chr2L_17963396_17963605;chr2L_17972263_17974832 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 83.33 NA NA NA NA NA 84.62 NA NA NA NA NA NA 100.00 NA NA 80.00 K jcn_only_AA CG5746 chr3R - chr3R_20172475_20172538 chr3R_20172483_20172538 chr3R_20172539_20172607;chr3R_20172414_20172474 100.00 100.00 99.22 98.92 98.99 100.00 99.34 99.40 99.64 100.00 98.97 100.00 100.00 100.00 100.00 99.22 100.00 99.19 100.00 100.00 100.00 99.48 100.00 100.00 100.00 100.00 99.49 100.00 99.21 99.52 100.00 100.00 99.69 100.00 100.00 100.00 100.00 99.37 99.64 100.00 100.00 100.00 100.00 100.00 99.54 98.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.39 100.00 100.00 K alternative_donor Zyx102EF,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1081261_1081364;chr4_1081261_1081398 chr4_1081261_1081366 chr4_1081180_1081260;chr4_1081399_1081402 85.16 NA NA 90.00 NA NA 84.62 NA 92.31 NA NA 75.00 NA 83.33 NA 90.91 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA 85.71 NA NA 70.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 81.82 NA NA NA NA NA NA NA NA NA N jcn_only_AD CG6293,Bruce chr3R - chr3R_6136241_6137129;chr3R_6136241_6137183 chr3R_6136241_6136995 chr3R_6135621_6136240;chr3R_6137184_6137328 0.00 0.00 0.00 0.00 0.00 0.00 2.97 0.00 0.00 0.00 0.00 0.84 2.74 0.00 0.00 0.00 0.00 1.59 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9099 chrX - chrX_16780262_16780350 chrX_16780261_16780262;chrX_16780350_16780351 chrX_16780000_16780261;chrX_16780351_16780489 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG9791 chr3R + chr3R_137697_137762 chr3R_137697_137751 chr3R_137378_137696;chr3R_137763_138036 91.43 NA NA 85.71 NA NA 84.62 91.43 90.74 NA 85.00 90.48 95.00 95.00 80.95 96.97 NA NA 85.19 86.67 NA 95.24 75.00 96.30 NA NA 100.00 NA NA 95.24 75.00 NA 93.10 96.67 NA NA NA NA 93.55 94.74 NA 87.80 85.19 90.91 NA NA NA 95.83 97.73 NA 92.31 NA NA NA 90.62 NA NA NA K intron_retention CG13319,RI_chr2R_8812301_8816468 chr2R + chr2R_8811853_8811926 chr2R_8811852_8811853;chr2R_8811926_8811927 chr2R_8811372_8811852;chr2R_8811927_8812157 14.71 12.24 14.29 15.38 18.52 10.34 21.21 14.71 14.58 14.00 31.58 4.26 11.11 11.11 13.79 22.22 13.64 16.67 0.00 16.36 23.53 13.64 13.92 8.47 28.57 33.33 20.00 22.45 25.00 12.50 17.50 16.67 26.67 12.82 6.90 26.32 8.20 7.46 11.76 20.59 24.14 12.28 8.70 17.50 19.15 16.92 14.29 32.26 18.18 7.69 19.23 21.43 22.37 10.34 6.06 11.84 9.03 30.99 K intron_retention RI_chr3L_21188731_21188785,CG33054,CG33056,noncoding_13933 chr3L - chr3L_21193615_21193724 chr3L_21193614_21193615;chr3L_21193724_21193725 chr3L_21193577_21193614;chr3L_21193725_21193737 100.00 100.00 NA 100.00 NA NA 100.00 100.00 93.75 NA NA 90.91 NA 88.89 87.50 100.00 NA NA 100.00 100.00 NA 90.91 100.00 100.00 NA NA 90.91 100.00 NA NA 92.31 NA NA 92.31 NA NA 100.00 NA NA 91.67 NA 100.00 NA 87.50 NA 100.00 NA NA 100.00 90.00 100.00 100.00 NA NA 100.00 NA 93.75 NA K alternative_donor I_chr2R_17169674_17170491,CG10069,I_chr2R_17169897_17170495,I_chr2R_17170432_17170491,I_chr2R_17171765_17171886 chr2R + chr2R_17170432_17170491;chr2R_17170336_17170491;chr2R_17169885_17170491;chr2R_17169897_17170491 chr2R_17170070_17170491 chr2R_17170492_17170591;chr2R_17169869_17169884 11.11 16.67 9.09 4.76 9.09 12.50 27.03 25.00 9.80 6.67 15.00 9.62 14.81 19.23 10.00 7.14 15.38 17.39 9.52 9.38 13.04 9.43 11.11 8.57 12.50 15.62 9.09 10.00 5.13 13.79 11.11 8.33 12.50 14.81 16.67 18.18 6.67 12.90 8.89 5.63 10.34 8.93 26.09 7.69 12.50 13.79 13.04 10.00 10.91 14.29 16.67 10.34 9.09 9.09 11.76 16.67 13.04 10.26 K intron_retention Arp87C chr3R + chr3R_8518878_8518936 chr3R_8518877_8518878;chr3R_8518936_8518937 chr3R_8518726_8518877;chr3R_8518937_8519483 1.10 0.00 0.00 1.64 1.39 0.00 0.00 0.00 1.32 0.00 0.00 1.61 1.43 1.69 4.12 2.70 3.23 0.00 2.94 0.88 1.47 5.39 0.87 0.00 0.91 0.00 4.81 10.45 3.14 2.29 3.66 0.00 1.45 0.00 1.46 1.59 2.11 1.02 1.41 1.48 1.33 1.30 0.00 0.77 1.26 1.10 0.99 0.00 1.04 0.70 0.96 0.00 0.00 0.61 3.19 1.06 1.49 0.00 K intron_retention I_chr2R_7778750_7781059,I_chr2R_7778971_7781059,Ef1alpha48D,I_chr2R_7779690_7780997,I_chr2R_7779690_7781065,I_chr2R_7779690_7783075,I_chr2R_7779719_7781059,I_chr2R_7779813_7781059,I_chr2R_7779892_7781059,EF_chr2R_7779896_7781065,I_chr2R_7780542_7781059,I_chr2R_7780580_7781059,snoRNA:Me28S-A1322,I_chr2R_7780840_7781059,I_chr2R_7780877_7781059,RI_chr2R_7781135_7783075 chr2R + chr2R_7779892_7781059 chr2R_7779891_7779892;chr2R_7781059_7781060 chr2R_7779804_7779891;chr2R_7781060_7781097 94.12 94.44 100.00 96.30 NA 90.91 95.83 94.74 91.18 100.00 90.00 94.74 72.73 92.31 100.00 100.00 91.67 81.82 78.57 83.78 90.00 95.65 96.67 95.24 91.67 75.00 98.18 99.31 95.00 89.47 90.00 100.00 75.00 94.74 91.67 100.00 96.55 100.00 90.48 96.00 NA 89.66 80.00 93.75 92.86 83.33 95.45 91.67 96.55 91.67 95.83 93.33 95.24 94.12 82.35 100.00 96.00 91.67 K alternative_donor CG15321,I_chrX_9578185_9579504,I_chrX_9578185_9579582,I_chrX_9578185_9580671,RI_chrX_9578185_9581011 chrX - chrX_9578185_9579504;chrX_9578185_9579582 chrX_9578185_9579535 chrX_9578085_9578184;chrX_9579583_9579597 90.45 NA 100.00 92.31 NA NA 88.89 87.50 85.71 NA NA 100.00 88.89 90.00 100.00 93.75 NA NA 90.00 91.67 NA NA 85.71 NA NA NA NA NA 87.50 85.71 90.00 NA 100.00 90.91 NA NA NA NA NA 93.75 NA 92.86 80.00 100.00 NA 100.00 NA 80.65 87.50 NA 87.50 NA NA NA 100.00 NA NA 100.00 K alternative_donor Gbeta13F,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,RI_chrX_15755345_15755409 chrX + chrX_15755520_15755598 chrX_15755526_15755598 chrX_15755599_15756919;chrX_15755417_15755519 90.91 91.43 89.23 92.78 90.48 92.31 93.40 90.15 94.92 90.48 90.00 90.91 90.00 90.12 93.55 90.11 97.06 92.86 92.05 91.13 90.20 94.20 91.96 91.30 94.23 95.31 88.89 87.88 82.76 95.74 92.19 85.00 85.71 90.32 87.27 90.20 87.10 92.06 91.53 91.76 80.00 92.91 90.00 88.71 88.89 87.93 90.91 96.30 89.68 96.97 89.77 92.41 90.00 92.11 90.79 88.89 93.22 95.24 K intron_retention Zasp52,I_chr2R_11652341_11652627,RI_chr2R_11652953_11660545,RI_chr2R_11654219_11660545,F_chr2R_11660759_11661284,I_chr2R_11690993_11701987 chr2R - chr2R_11652341_11661320 chr2R_11652340_11652341;chr2R_11661320_11661321 chr2R_11652241_11652340;chr2R_11661321_11661384 2.38 2.08 1.28 2.08 1.82 5.00 6.25 2.44 3.52 2.00 3.77 1.69 3.45 6.90 6.25 2.99 4.17 1.59 3.28 1.54 6.56 2.54 1.97 2.16 0.98 3.12 3.48 4.23 1.96 2.65 0.92 0.00 1.56 4.81 0.91 3.41 4.64 2.04 1.69 1.19 2.94 3.52 0.00 1.94 2.50 0.00 0.79 1.92 4.00 2.38 2.29 3.03 2.70 1.75 2.63 0.91 1.80 3.28 K jcn_only_AA CG40127,I_chr2R_75348_75450 chr2R - chr2R_75348_75450 chr2R_75385_75450 chr2R_75451_75519;chr2R_75282_75347 100.00 100.00 100.00 100.00 100.00 100.00 99.60 99.61 100.00 100.00 100.00 99.78 100.00 100.00 100.00 99.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.61 100.00 100.00 99.26 99.55 100.00 98.95 100.00 99.39 100.00 100.00 100.00 99.32 99.64 99.41 99.58 100.00 100.00 100.00 100.00 100.00 100.00 99.79 100.00 99.71 100.00 99.23 100.00 99.59 100.00 100.00 99.60 K intron_retention PDCD-5 chr3L - chr3L_16224502_16224573 chr3L_16224501_16224502;chr3L_16224573_16224574 chr3L_16224436_16224501;chr3L_16224574_16224642 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 91.67 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 96.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 97.50 96.00 100.00 93.33 100.00 100.00 100.00 100.00 95.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention I_chr3L_1945382_1945647,CG11814 chr3L - chr3L_1951229_1951283 chr3L_1951228_1951229;chr3L_1951283_1951284 chr3L_1950761_1951228;chr3L_1951284_1952182 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 NA 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Traf-like,I_chrX_16309163_16309641,I_chrX_16309212_16309689,I_chrX_16309561_16309641,I_chrX_16309561_16309689,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16309619_16309689;chrX_16309163_16309689 chrX_16309561_16309689 chrX_16309690_16309741;chrX_16309112_16309162 3.92 0.00 0.00 3.70 0.00 0.00 2.94 3.92 3.23 0.00 5.00 2.22 5.00 4.17 3.45 0.00 3.85 3.45 3.33 8.33 4.00 3.23 8.70 0.00 6.25 4.35 0.00 14.29 0.00 5.26 15.52 5.88 4.17 2.22 15.00 15.00 3.33 0.00 0.00 9.68 14.29 5.88 4.55 0.00 7.69 9.09 6.25 7.14 3.92 0.00 6.90 0.00 7.14 0.00 3.03 4.35 3.45 14.81 K intron_retention CG14767,RI_chr2R_4607538_4607606,CG30357,RI_chr2R_4609761_4610761,RI_chr2R_4610372_4610761 chr2R - chr2R_4607538_4610761 chr2R_4607537_4607538;chr2R_4610761_4610762 chr2R_4607438_4607537;chr2R_4610762_4610861 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.23 0.28 1.39 0.00 0.48 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.17 0.42 0.00 0.00 0.00 0.00 0.75 0.65 0.99 0.28 0.51 0.00 0.00 0.00 0.46 0.00 0.98 0.41 0.20 0.00 0.34 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 K alternative_donor gish chr3R + chr3R_12100604_12100675;chr3R_12100598_12100675 chr3R_12100608_12100675 chr3R_12100676_12100891;chr3R_12100535_12100597 45.68 47.00 43.69 41.83 46.38 47.78 47.37 49.67 45.45 35.62 43.48 51.15 40.79 39.53 58.56 57.80 41.56 53.42 45.74 41.34 42.25 44.76 42.14 47.20 51.25 65.00 48.57 47.37 52.00 46.53 45.00 51.02 45.66 47.06 49.04 43.30 52.17 40.91 42.07 40.59 43.48 49.43 47.06 44.74 38.60 40.40 56.10 45.53 41.03 54.41 54.36 45.68 41.51 54.10 51.33 41.56 45.10 42.47 K intron_retention CG10191 chr3L - chr3L_13381679_13381822 chr3L_13381678_13381679;chr3L_13381822_13381823 chr3L_13381393_13381678;chr3L_13381823_13382026 100.00 100.00 98.88 100.00 98.55 98.53 100.00 99.07 99.31 100.00 100.00 99.29 98.46 100.00 100.00 98.99 100.00 98.63 100.00 99.49 100.00 97.83 100.00 100.00 100.00 100.00 98.96 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.95 100.00 100.00 100.00 100.00 99.32 98.21 98.53 100.00 100.00 100.00 100.00 98.12 98.91 100.00 100.00 98.36 99.03 100.00 100.00 100.00 100.00 K intron_retention RpS4,Syx13,RI_chr3L_13037959_13038017,CG11279 chr3L + chr3L_13035469_13035541 chr3L_13035468_13035469;chr3L_13035541_13035542 chr3L_13035210_13035468;chr3L_13035542_13035639 0.05 0.00 0.00 0.09 0.05 0.05 0.09 0.08 0.06 0.08 0.00 0.08 0.02 0.03 0.02 0.11 0.00 0.07 0.02 0.04 0.00 0.10 0.06 0.05 0.06 0.07 0.08 0.25 0.29 0.05 0.09 0.00 0.05 0.07 0.00 0.00 0.06 0.10 0.04 0.09 0.03 0.03 0.00 0.02 0.05 0.09 0.01 0.08 0.11 0.07 0.05 0.11 0.04 0.03 0.04 0.11 0.05 0.05 K cassette Fem-1,RI_chr2R_16552969_16554423 chr2R - chr2R_16552574_16554423 chr2R_16552574_16552868;chr2R_16552969_16554423 chr2R_16552869_16552968 chr2R_16552291_16552573;chr2R_16554424_16554523 2.50 0.00 3.85 3.12 6.25 5.56 4.55 4.35 0.00 4.00 0.00 2.86 5.56 5.56 0.00 4.00 0.00 4.35 5.26 1.82 0.00 2.08 4.55 4.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 4.17 3.70 0.00 0.00 2.50 8.33 6.25 0.00 0.00 0.00 NA 0.00 5.56 5.56 0.00 6.25 2.38 5.26 3.23 0.00 NA 8.00 0.00 3.85 0.00 0.00 K intron_retention chinmo,cpb,mRpL48 chr2L + chr2L_1705115_1705399 chr2L_1705114_1705115;chr2L_1705399_1705400 chr2L_1704943_1705114;chr2L_1705400_1707011 0.87 0.00 0.00 3.15 0.00 1.98 1.71 0.44 1.42 1.92 0.00 0.00 0.00 3.15 0.68 0.00 0.00 3.88 1.15 1.15 0.00 2.11 0.00 0.00 2.90 0.00 2.08 6.94 5.71 0.00 0.77 0.00 0.00 0.90 0.97 0.00 1.59 2.44 0.78 1.43 4.17 0.87 0.00 0.00 3.70 2.29 2.35 2.99 0.80 1.94 0.00 1.39 0.00 0.00 0.00 0.00 1.63 2.11 K intron_retention RhoBTB,RI_chr3L_20370940_20371530,I_chr3L_20374844_20374891 chr3L + chr3L_20372949_20373010 chr3L_20372948_20372949;chr3L_20373010_20373011 chr3L_20372412_20372948;chr3L_20373011_20373269 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 6.12 0.00 3.45 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 37.14 1.59 2.44 0.00 9.52 0.00 13.64 6.45 0.00 2.78 0.00 0.00 3.12 0.00 0.00 0.00 2.56 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 2.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon CG10737 chr2R + chr2R_15064249_15065323 chr2R_15064249_15064445 chr2R_15065324_15065754 chr2R_15064446_15064932 chr2R_15064096_15064248 2.95 2.48 2.34 5.65 3.66 1.96 1.13 2.87 2.95 5.36 2.86 6.44 8.57 3.88 2.65 2.15 3.54 2.61 2.86 5.04 2.25 3.64 3.29 2.34 3.85 2.00 3.48 5.48 4.60 2.88 2.56 2.04 3.10 3.24 4.40 8.33 3.08 2.22 2.24 3.57 2.21 3.12 3.81 3.62 1.41 3.51 2.61 1.89 2.60 3.60 3.03 4.65 0.93 3.42 2.94 2.82 1.64 1.03 K jcn_only_AA mei-218,mei-217 chrX - chrX_17035515_17036834 chrX_17036741_17036834 chrX_17036835_17036969 96.97 NA NA NA NA NA 100.00 NA NA NA NA 95.65 NA NA NA 96.97 100.00 NA NA NA NA 90.91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD spi,I_chr2L_19569183_19577185,I_chr2L_19569227_19572142,I_chr2L_19569227_19577173,mir-2a-2,mir-2a-1,mir-2b-2 chr2L - chr2L_19569227_19577185 chr2L_19569227_19577173 chr2L_19569127_19569226;chr2L_19577186_19577273 3.51 2.33 3.45 3.57 10.71 3.33 2.50 1.41 5.56 NA 4.35 5.74 6.67 5.71 6.67 0.00 4.65 4.17 2.63 4.30 0.00 3.70 2.44 2.63 1.92 6.52 1.61 2.04 7.87 0.00 3.23 3.23 NA 5.06 0.00 3.57 7.69 NA 3.12 4.24 3.33 5.71 2.63 0.00 0.00 2.22 3.61 8.00 8.79 2.17 1.82 8.51 19.23 0.00 5.26 2.70 4.00 4.76 K alternative_donor Imp,I_chrX_10699490_10700695,RI_chrX_10699665_10700501,RI_chrX_10699665_10700695 chrX - chrX_10699665_10700474;chrX_10699665_10700501 chrX_10699665_10700695 chrX_10699565_10699664;chrX_10700696_10700795 14.29 20.00 14.29 7.14 NA 0.00 24.00 7.69 10.34 NA 12.50 10.53 33.33 0.00 11.11 8.33 14.29 11.11 14.29 36.36 20.00 NA 20.00 NA NA 42.86 14.29 NA NA NA 11.11 NA NA 17.39 NA NA NA NA NA NA NA 0.00 10.00 NA NA NA NA 20.00 26.09 NA 20.00 NA NA NA 28.57 NA NA NA K jcn_only_AA CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20825513_20825667 chr2L_20825513_20825658 chr2L_20825471_20825512;chr2L_20825668_20825758 8.28 15.62 8.00 NA NA NA 2.70 4.35 6.25 NA 16.22 0.00 NA NA 20.00 10.81 0.00 8.70 NA 5.71 9.09 NA 12.50 2.86 NA NA 13.79 12.12 8.70 5.56 NA 14.29 6.98 9.09 7.41 NA 12.50 13.04 8.11 8.45 13.64 5.26 NA 6.90 6.45 5.36 6.25 5.71 3.57 12.50 13.64 4.17 19.05 11.76 4.55 10.87 8.51 5.88 K intron_retention CG6294,CG6299,I_chrX_15359667_15359763 chrX + chrX_15360027_15360101 chrX_15360026_15360027;chrX_15360101_15360102 chrX_15359764_15360026;chrX_15360102_15360157 2.58 6.52 2.22 12.50 3.03 5.56 8.33 4.88 6.02 0.00 2.78 5.26 4.17 10.42 1.52 8.00 5.00 0.00 4.55 5.63 3.23 0.00 0.00 0.00 8.33 6.98 14.29 NA 0.00 0.00 2.38 0.00 2.33 5.56 0.00 4.35 0.00 0.00 0.00 4.65 0.00 4.88 7.89 1.89 2.99 3.03 0.00 3.85 4.76 0.00 2.17 0.00 0.00 0.00 1.85 2.00 0.00 2.25 K cassette CG3114,RI_chrX_168562_168685 chrX - chrX_165909_167215;chrX_165647_167215 chrX_165909_166454,chrX_165647_166454;chrX_166917_167215 chrX_166455_166916 chrX_165521_165646;chrX_167216_167420 28.18 29.41 21.43 25.00 NA 28.57 7.69 18.75 30.43 66.67 25.00 23.81 20.00 25.00 27.78 43.75 25.00 30.00 33.33 40.74 18.18 29.41 39.13 30.77 18.18 28.57 33.33 33.33 38.46 33.33 33.33 30.00 47.06 26.32 21.43 50.00 31.82 41.67 22.73 15.00 12.50 32.00 75.00 30.00 25.00 30.00 25.00 20.00 25.00 10.00 37.50 36.36 20.00 27.27 25.00 22.22 23.08 22.22 K jcn_only_AA CG6762,I_chrX_17751392_17751499,I_chrX_17751392_17751520 chrX + chrX_17751392_17751524;chrX_17751392_17751535 chrX_17751392_17751505 chrX_17751292_17751391;chrX_17751536_17751560 58.62 NA NA NA NA NA 57.14 75.00 65.00 NA NA NA NA NA NA 50.00 NA NA NA 60.71 NA 54.55 72.73 60.00 NA NA 50.00 58.62 65.00 NA NA 63.64 50.00 NA NA NA 74.07 45.00 58.62 61.90 56.52 62.50 NA NA 33.33 47.50 52.38 46.15 59.26 57.14 52.38 NA 67.86 78.26 NA 80.77 64.52 44.44 K intron_retention Inos,I_chr2R_3344353_3345211 chr2R - chr2R_3343275_3343338 chr2R_3343274_3343275;chr2R_3343338_3343339 chr2R_3342807_3343274;chr2R_3343339_3343581 0.32 0.20 0.32 0.48 0.23 0.17 0.46 0.52 0.29 0.08 0.15 0.30 0.42 0.25 0.42 0.44 0.27 0.45 0.37 0.28 0.38 0.42 0.34 0.35 0.21 0.37 0.74 0.87 0.16 0.30 0.18 0.39 0.15 0.45 0.35 0.42 0.30 0.19 0.22 0.30 0.21 0.34 0.40 0.18 0.29 0.28 0.22 0.16 0.56 0.41 0.36 0.42 0.37 0.26 0.32 0.24 0.33 0.30 K alternative_donor CG17224,RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605 chr2L - chr2L_3018025_3018274;chr2L_3018025_3018163;chr2L_3018025_3018085;chr2L_3018025_3018278 chr2L_3018025_3018081 chr2L_3017982_3018024;chr2L_3018279_3018287 22.22 0.00 NA 20.00 NA NA 33.33 40.00 28.57 NA NA 36.36 NA 50.00 0.00 66.67 25.00 NA NA 16.67 NA 33.33 NA 33.33 NA NA NA NA NA NA 11.11 0.00 NA 13.33 NA NA NA NA NA 8.33 33.33 22.22 33.33 22.22 0.00 30.00 NA 16.67 14.29 NA NA NA NA NA 0.00 NA NA 0.00 K intron_retention lilli chr2L + chr2L_2951557_2951639 chr2L_2951556_2951557;chr2L_2951639_2951640 chr2L_2951470_2951556;chr2L_2951640_2951805 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 8.33 0.00 0.00 1.92 0.00 0.00 2.27 0.00 0.00 0.00 0.00 3.28 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 3.33 2.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pitslre,RI_chr3L_20766064_20766893,I_chr3L_20766311_20766893,I_chr3L_20766773_20766893 chr3L + chr3L_20766773_20766893 chr3L_20766772_20766773;chr3L_20766893_20766894 chr3L_20766692_20766772;chr3L_20766894_20766993 90.91 81.82 77.78 76.47 NA 78.57 94.44 79.31 96.00 88.89 NA 95.45 100.00 100.00 83.33 100.00 92.86 92.31 94.12 85.19 90.91 90.91 92.86 77.27 91.67 93.75 86.36 100.00 94.12 85.71 66.67 91.67 100.00 94.12 90.00 91.67 75.00 92.86 86.96 81.08 100.00 95.45 90.00 95.45 90.00 93.75 85.71 90.00 94.74 100.00 83.33 90.00 90.00 NA 87.50 86.67 100.00 90.00 K jcn_only_AA CG18081,I_chr3L_15827984_15828396 chr3L - chr3L_15827980_15828293 chr3L_15827984_15828293 chr3L_15828294_15828459;chr3L_15827948_15827979 93.16 93.94 92.25 94.68 89.89 94.74 94.44 92.79 93.87 98.11 90.11 96.28 94.49 94.69 92.86 93.95 95.40 96.00 95.27 95.58 93.14 97.06 92.81 93.10 98.51 92.25 90.53 89.19 86.11 91.80 92.31 94.44 95.56 93.68 92.59 93.51 91.06 91.87 97.32 93.16 91.89 95.33 90.32 90.76 90.91 93.28 90.07 87.76 96.31 92.50 96.88 95.24 89.29 94.87 89.33 92.31 95.96 91.53 K jcn_only_AA Pcf11,RI_chr2R_10753287_10754988 chr2R - chr2R_10753272_10754988;chr2R_10753287_10754988;chr2R_10753557_10754988;chr2R_10753239_10754988 chr2R_10753581_10754988 chr2R_10754989_10755088;chr2R_10753187_10753238 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 2.08 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 4.17 NA 0.00 NA 3.57 0.00 NA NA 0.00 0.00 0.00 2.13 NA 2.04 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K intron_retention CG1434 chrX + chrX_14133981_14134074 chrX_14133980_14133981;chrX_14134074_14134075 chrX_14133706_14133980;chrX_14134075_14134188 43.75 NA 45.45 60.00 NA NA 53.85 58.82 39.39 NA NA 55.00 NA NA 42.86 43.75 NA NA NA 44.00 NA 36.36 77.78 28.57 NA NA NA NA NA NA 35.71 NA NA 58.82 NA NA NA NA NA NA NA 33.33 NA NA 50.00 NA NA NA 37.04 NA NA NA 50.00 NA 38.46 NA 43.75 38.46 N alternative_donor Irc,I_chr3R_12830023_12830084,CG8907 chr3R + chr3R_12830775_12830891 chr3R_12830829_12830891 chr3R_12830892_12831073;chr3R_12830588_12830774 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 K intron_retention stj chr2R + chr2R_9695681_9696779 chr2R_9695680_9695681;chr2R_9696779_9696780 chr2R_9695404_9695680;chr2R_9696780_9697174 3.03 0.00 6.25 19.15 10.00 0.00 3.77 10.71 15.56 0.00 NA 7.84 0.00 0.00 0.00 0.00 31.58 0.00 15.00 6.25 0.00 18.92 0.00 0.00 7.41 8.11 3.28 16.67 6.06 3.33 6.45 NA 4.76 15.56 NA 3.28 2.53 0.00 0.00 5.56 0.00 0.00 NA 3.03 NA 0.00 0.00 0.00 7.02 0.00 7.69 0.00 0.00 NA 3.45 0.00 0.00 0.00 K intron_retention Not1,I_chr2R_5463624_5463682 chr2R - chr2R_5456428_5456489 chr2R_5456427_5456428;chr2R_5456489_5456490 chr2R_5456068_5456427;chr2R_5456490_5457661 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG9306,I_chr2L_13370565_13370841,I_chr2L_13370795_13370841 chr2L - chr2L_13370764_13370853 chr2L_13370764_13370841 chr2L_13370696_13370763;chr2L_13370854_13370918 100.00 100.00 98.48 100.00 100.00 98.41 100.00 100.00 100.00 100.00 100.00 99.39 100.00 100.00 98.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.09 98.44 100.00 100.00 100.00 100.00 100.00 100.00 99.25 100.00 100.00 100.00 99.54 99.15 97.47 99.30 100.00 100.00 100.00 99.41 99.53 100.00 100.00 100.00 99.35 100.00 100.00 99.24 100.00 99.41 100.00 98.33 K intron_retention br,I_chrX_1517022_1518170,chrX_1531825_1532171.0,chrX_1532359_1533289.0,chrX_1533577_1534629.0,chrX_1535554_1536485.0,chrX_1539850_1540090.0,chrX_1540212_1541396.0,chrX_1544237_1547430.0,chrX_1547632_1547887.0,noncoding_21384,dor chrX + chrX_1531368_1548424 chrX_1531367_1531368;chrX_1548424_1548425 chrX_1531317_1531367;chrX_1548425_1549083 9.76 NA NA 20.00 0.00 12.50 17.65 16.67 10.87 NA 0.00 16.22 NA NA 0.00 23.53 NA NA NA 7.14 0.00 NA 9.52 16.67 NA 14.29 15.38 NA NA 0.00 0.00 NA 0.00 16.67 11.76 NA 0.00 NA 0.00 0.00 NA 11.76 NA NA NA NA NA NA 11.76 NA 0.00 NA 0.00 NA 10.00 NA NA 0.00 K intron_retention Amph,I_chr2R_8498227_8498492 chr2R + chr2R_8498227_8498513 chr2R_8498226_8498227;chr2R_8498513_8498514 chr2R_8498127_8498226;chr2R_8498514_8498592 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 NA 0.00 0.00 2.44 6.25 1.82 2.86 0.00 0.00 0.00 1.08 0.00 7.14 0.00 4.17 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5399 chr3R + chr3R_11521802_11521865 chr3R_11521801_11521802;chr3R_11521865_11521866 chr3R_11521471_11521801;chr3R_11521866_11521907 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 96.43 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention su(f),I_chrXHet_77570_78035 chrXHet + chrXHet_78871_79319 chrXHet_78870_78871;chrXHet_79319_79320 chrXHet_78763_78870;chrXHet_79320_79620 0.00 0.00 0.00 1.68 0.00 0.00 0.00 0.88 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.70 0.00 4.17 0.99 1.94 0.00 0.00 0.00 3.03 13.16 0.00 0.00 3.28 3.85 0.00 1.82 1.41 0.00 0.00 0.00 0.00 0.00 0.00 3.12 1.06 6.25 4.82 0.99 1.72 1.27 2.94 0.00 3.03 0.00 0.00 0.00 0.00 1.64 6.90 N alternative_donor CG6293,Bruce chr3R - chr3R_6136241_6136995;chr3R_6136241_6137183 chr3R_6136241_6137129 chr3R_6135621_6136240;chr3R_6137184_6137328 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.07 0.22 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.13 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27805342_27810955;chr3R_27805342_27811214 chr3R_27805342_27811232 chr3R_27805247_27805341;chr3R_27811233_27811433 0.00 3.33 0.00 1.89 6.67 3.03 0.00 0.00 1.01 0.00 0.00 0.00 2.63 2.08 0.00 0.00 NA 0.00 0.00 0.00 2.56 7.41 0.00 0.00 NA 0.00 0.00 NA 16.00 0.00 0.00 NA 5.41 0.00 4.17 3.03 0.00 0.00 3.03 1.85 NA 2.50 3.85 0.00 NA NA 0.00 0.00 0.00 2.78 0.00 0.00 NA NA 3.51 0.00 0.00 0.00 K jcn_only_AD Hil chr2R - chr2R_16502439_16505634 chr2R_16502439_16505571 chr2R_16502011_16502438;chr2R_16505635_16505711 71.94 NA 55.00 NA NA NA NA NA 48.65 77.78 NA 80.95 NA NA NA 52.38 NA NA NA 69.23 NA NA 71.88 NA NA NA NA NA 77.42 50.00 NA 65.00 95.74 NA 86.21 90.91 48.72 NA 75.00 61.11 90.91 62.07 NA 48.28 NA 86.96 39.13 90.48 72.00 NA NA NA NA NA NA NA NA 94.12 K intron_retention CG11107 chr2R + chr2R_3278127_3278184 chr2R_3278126_3278127;chr2R_3278184_3278185 chr2R_3277777_3278126;chr2R_3278185_3278509 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention vlc chr2R + chr2R_1589953_1590371 chr2R_1589952_1589953;chr2R_1590371_1590372 chr2R_1589914_1589952;chr2R_1590372_1590451 80.00 NA NA 75.00 NA NA NA 88.89 72.73 NA NA 80.00 NA NA NA 84.62 NA 65.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA NA NA 63.64 NA NA NA NA NA NA NA 87.50 88.89 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG3036 chr2L + chr2L_4902906_4902973 chr2L_4902910_4902973 chr2L_4902974_4903889;chr2L_4902664_4902905 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 2.94 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 1.35 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD I_chrX_16266436_16268958,Fur2,I_chrX_16267221_16268573,I_chrX_16267868_16268958,RI_chrX_16267905_16268958,I_chrX_16270205_16270272,I_chrX_16274795_16274867 chrX + chrX_16267208_16268958 chrX_16267221_16268958 chrX_16268959_16269058;chrX_16267150_16267207 79.78 86.21 NA 72.73 NA NA 70.83 68.89 71.79 90.62 75.00 70.59 75.00 68.97 69.57 82.14 78.95 NA NA 74.58 82.61 73.13 80.60 84.91 75.00 71.43 69.05 82.86 85.71 85.00 77.42 NA 86.05 72.22 67.74 84.44 81.48 81.82 82.61 93.10 83.33 74.36 NA 85.07 NA 84.21 95.00 90.62 73.77 76.92 81.13 72.22 85.00 NA 74.07 96.15 70.83 92.59 K alternative_acceptor CG40042 chr2LHet - chr2LHet_168170_168233 chr2LHet_168188_168233 chr2LHet_168234_168403;chr2LHet_167980_168169 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.18 0.00 K multi_cassette Ppn,F_chr3R_24347009_24347078 chr3R - chr3R_24348983_24349755 chr3R_24348983_24349248;chr3R_24349420_24349501;chr3R_24349697_24349755 chr3R_24349249_24349419;chr3R_24349502_24349696 chr3R_24348417_24348982;chr3R_24349756_24349939 37.14 38.89 25.00 22.86 31.03 38.71 16.33 25.71 34.25 27.27 33.33 25.00 16.95 28.12 23.68 36.00 16.00 35.71 30.77 36.63 22.22 37.14 47.92 50.00 35.90 20.00 48.57 22.22 25.00 43.75 30.00 38.46 61.54 30.95 41.18 42.86 45.61 53.85 55.56 37.74 40.00 28.21 19.35 44.00 42.86 48.39 57.14 41.94 28.99 44.44 53.66 58.33 56.52 47.83 29.41 58.82 57.50 45.00 K alternative_donor alpha-Cat,I_chr3L_23319861_23321813,I_chr3L_23327841_23328002 chr3L - chr3L_23322024_23322329 chr3L_23322024_23322078 chr3L_23321814_23322023;chr3L_23322330_23322498 100.00 100.00 100.00 100.00 100.00 100.00 99.06 99.14 99.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.78 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG13937,RI_chr3L_1877663_1877719 chr3L - chr3L_1881477_1882999;chr3L_1881549_1882999 chr3L_1881558_1882999 chr3L_1883000_1883037;chr3L_1881129_1881476 44.44 NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA 66.67 NA NA NA 44.44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA K intron_retention loqs chr2L + chr2L_13384023_13384656 chr2L_13384022_13384023;chr2L_13384656_13384657 chr2L_13383737_13384022;chr2L_13384657_13384662 60.00 NA NA 87.50 NA NA NA NA 88.89 NA NA 47.37 NA NA NA 77.78 NA NA NA 56.25 NA NA 53.85 50.00 NA NA NA NA NA NA 81.82 NA NA 66.67 NA NA NA NA NA 57.14 60.00 50.00 NA NA NA 63.64 NA 72.73 NA 87.50 NA NA NA NA 55.56 60.00 NA NA K intron_retention MED1 chr3L - chr3L_21623977_21624032 chr3L_21623976_21623977;chr3L_21624032_21624033 chr3L_21623908_21623976;chr3L_21624033_21625939 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 94.44 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 98.68 100.00 100.00 100.00 100.00 100.00 100.00 97.67 98.75 100.00 96.67 100.00 100.00 100.00 97.50 100.00 99.03 100.00 97.83 96.30 100.00 96.15 100.00 100.00 100.00 100.00 100.00 N cassette CG1444,CG1514,Ykt6 chrX + chrX_7803958_7804885 chrX_7803958_7804741;chrX_7804818_7804885 chrX_7804742_7804817 chrX_7803911_7803957;chrX_7804886_7805226 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor Sap47,I_chr3R_11761076_11761674,I_chr3R_11761436_11761674,F_chr3R_11761635_11761698,E_chr3R_11761635_11761703 chr3R + chr3R_11761307_11761561;chr3R_11761307_11761674;chr3R_11761307_11761703 chr3R_11761307_11761698 chr3R_11761299_11761306;chr3R_11761704_11761774 5.00 7.41 4.17 7.50 5.00 9.09 2.94 4.08 1.49 10.00 0.00 2.00 0.00 13.79 6.67 2.08 3.70 4.00 5.88 1.59 0.00 26.67 5.00 3.33 5.00 4.00 3.23 9.09 10.00 6.45 2.50 5.26 9.09 2.04 4.17 6.45 8.00 4.17 7.69 6.52 5.88 1.85 4.17 6.06 4.55 6.25 7.69 3.33 4.26 4.17 5.00 9.09 6.67 5.56 5.71 12.50 10.00 2.08 K alternative_acceptor ena chr2R + chr2R_15047541_15047681;chr2R_15047541_15047684;chr2R_15047541_15047753 chr2R_15047541_15047756 chr2R_15047496_15047540;chr2R_15047757_15048407 1.54 0.00 1.94 0.57 1.83 3.00 1.06 2.41 0.38 3.03 1.82 2.37 1.52 0.00 2.24 1.14 3.03 1.69 0.00 2.20 0.88 0.71 2.48 1.80 1.20 1.19 0.94 0.00 1.37 0.70 1.03 1.54 0.72 1.73 0.00 1.14 0.42 1.00 2.44 1.73 0.00 0.83 1.27 2.48 2.06 0.00 1.27 0.00 2.00 2.47 3.54 3.45 2.99 1.61 2.11 3.57 7.94 1.89 N multi_cassette CG1674,I_chr4_253475_257020,F_chr4_258186_259747,F_chr4_259865_260939,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_254972_260939 chr4_254972_255489;chr4_255571_257020;chr4_257102_260939 chr4_255490_255570;chr4_257021_257101 chr4_254893_254971;chr4_260940_261024 100.00 100.00 100.00 41.67 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA 100.00 100.00 NA NA NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 K intron_retention Pld,I_chr2R_2130639_2136916,RI_chr2R_2138358_2141112 chr2R + chr2R_2129606_2130126 chr2R_2129605_2129606;chr2R_2130126_2130127 chr2R_2129572_2129605;chr2R_2130127_2130224 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA NA 92.31 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA K intron_retention Tsp42Ed chr2R - chr2R_2897551_2897607 chr2R_2897550_2897551;chr2R_2897607_2897608 chr2R_2897285_2897550;chr2R_2897608_2897805 0.19 0.00 0.00 0.83 0.00 0.00 0.61 0.71 0.46 0.00 0.00 0.67 0.00 0.37 0.00 1.11 0.38 0.00 0.00 0.30 0.00 0.26 0.00 0.00 0.40 0.38 0.74 0.86 2.39 0.30 0.00 0.22 0.00 0.00 0.47 0.50 0.00 0.22 0.00 0.21 0.81 1.12 0.46 0.00 0.19 0.42 0.10 0.00 0.00 0.00 0.57 0.00 0.00 0.10 0.29 0.00 0.00 0.31 K alternative_acceptor CG10874 chr2L - chr2L_2190644_2190706 chr2L_2190647_2190706 chr2L_2190707_2190784;chr2L_2189869_2190643 9.09 9.09 9.52 9.09 13.89 9.09 11.32 11.90 6.94 6.67 12.50 9.52 8.33 7.41 5.88 12.20 8.82 11.63 9.09 7.94 5.00 13.04 13.04 7.59 12.82 9.30 8.93 9.09 10.26 12.12 6.25 3.45 7.41 9.52 13.16 9.52 8.45 7.55 9.43 6.38 6.06 8.24 2.70 6.98 14.58 8.51 12.50 15.79 10.91 6.25 8.33 8.33 16.00 10.00 6.82 7.55 10.47 8.57 K cassette CG31531,I_chr3R_523978_525892,I_chr3R_523978_526879 chr3R + chr3R_523978_526879 chr3R_523978_525892;chr3R_526050_526879 chr3R_525893_526049 chr3R_523878_523977;chr3R_526880_526979 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 96.55 100.00 97.50 100.00 94.44 100.00 100.00 93.75 100.00 100.00 100.00 100.00 96.55 97.87 100.00 94.74 100.00 100.00 100.00 86.67 98.04 95.83 100.00 98.72 97.30 96.67 97.06 100.00 100.00 100.00 98.33 96.55 97.92 100.00 100.00 96.97 97.37 100.00 96.43 97.30 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 98.36 K alternative_donor Dsp1,I_chrX_16231287_16231413 chrX + chrX_16227752_16228333;chrX_16227804_16228333;chrX_16227677_16228333;chrX_16227797_16228333 chrX_16228273_16228333 chrX_16228334_16228446;chrX_16227667_16227676 79.17 72.41 75.86 80.49 66.67 64.00 86.67 69.49 75.00 83.33 83.33 72.58 81.08 69.70 78.57 80.65 64.29 85.19 73.81 72.22 68.42 84.62 78.43 86.21 83.87 79.17 82.05 93.75 73.91 86.67 84.85 71.43 70.83 76.19 90.48 84.85 80.00 76.47 67.65 79.59 83.33 79.31 80.00 82.86 83.33 84.21 80.95 71.43 74.60 74.07 89.19 76.92 68.75 73.33 76.47 66.67 80.00 80.00 N alternative_acceptor CG8108,EI_chr3L_9859462_9859590,chr3L_9859594_9859878.0 chr3L + chr3L_9859462_9860413;chr3L_9859462_9859590 chr3L_9859462_9860377 chr3L_9859414_9859461;chr3L_9860414_9860844 1.33 1.04 1.61 1.33 1.64 1.69 1.30 2.25 0.55 2.17 1.61 0.76 2.00 1.67 1.14 1.67 1.67 1.18 3.12 0.88 0.00 2.70 0.71 1.05 1.39 1.85 1.04 1.75 0.00 1.49 7.75 0.00 0.00 1.10 1.43 16.25 0.72 1.01 0.64 1.08 0.00 0.75 1.72 1.52 0.00 1.30 1.08 2.04 0.87 1.43 0.79 1.85 2.38 1.23 1.39 1.18 1.85 1.43 K intron_retention MED10,I_chr3L_16225377_16225479 chr3L + chr3L_16225424_16225479 chr3L_16225423_16225424;chr3L_16225479_16225480 chr3L_16225129_16225423;chr3L_16225480_16225579 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 3.17 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Idgf1,Idgf2 chr2L + chr2L_16445990_16446060 chr2L_16445989_16445990;chr2L_16446060_16446061 chr2L_16445220_16445989;chr2L_16446061_16446862 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.15 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG14299 chr3R - chr3R_14580934_14581062 chr3R_14580999_14581062 chr3R_14581063_14581206;chr3R_14580821_14580933 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 K intron_retention Mgat2,I_chr3R_25842597_25842859,I_chr3R_25845406_25846373 chr3R - chr3R_25842597_25843987 chr3R_25842596_25842597;chr3R_25843987_25843988 chr3R_25842497_25842596;chr3R_25843988_25844128 6.17 0.00 6.67 11.76 0.00 0.00 5.88 0.00 8.33 NA 0.00 9.09 8.33 0.00 8.33 6.90 0.00 7.41 4.76 7.94 0.00 15.38 5.71 13.64 0.00 9.09 4.65 16.67 16.67 6.90 3.12 4.76 11.54 9.09 0.00 11.54 7.69 7.14 10.87 17.02 NA 2.33 NA 0.00 0.00 13.33 2.86 4.76 0.00 6.67 6.45 0.00 0.00 7.41 0.00 4.17 8.70 0.00 K jcn_only_AA Pino,I_chr2L_1118700_1128128,RI_chr2L_1123440_1128128,RI_chr2L_1128073_1128128 chr2L - chr2L_1117517_1128128 chr2L_1128073_1128128 chr2L_1128129_1128228;chr2L_1117444_1117516 1.92 2.17 2.56 0.00 2.13 0.00 1.30 1.56 1.50 1.16 5.00 4.05 3.23 3.12 2.63 1.64 0.00 8.00 5.41 1.82 3.45 1.01 1.20 1.87 5.26 0.00 0.78 1.08 4.60 1.27 10.26 1.92 4.55 6.56 5.13 0.00 0.94 3.57 2.04 2.13 0.00 4.35 5.88 2.08 3.77 1.28 1.37 0.00 1.39 0.00 0.00 3.61 1.61 1.54 2.22 3.00 0.00 7.27 K intron_retention CG2701,RI_chrX_2612780_2612845,ttm50 chrX - chrX_2612784_2612845 chrX_2612783_2612784;chrX_2612845_2612846 chrX_2611673_2612783;chrX_2612846_2612945 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 2.90 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention pix,I_chr3L_8967436_8967756 chr3L - chr3L_8966502_8966560 chr3L_8966501_8966502;chr3L_8966560_8966561 chr3L_8965785_8966501;chr3L_8966561_8967171 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG5591 chr2R + chr2R_19789479_19789554 chr2R_19789479_19789542 chr2R_19787515_19789478;chr2R_19789555_19789687 97.30 NA NA 100.00 NA NA 96.30 100.00 96.67 NA NA 100.00 NA NA NA 96.88 NA 100.00 95.00 95.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 95.00 NA NA NA 95.65 NA NA 100.00 NA NA NA NA NA NA 97.30 96.67 NA NA NA NA NA NA 100.00 NA K intron_retention CG9018 chr3L - chr3L_2235973_2236049 chr3L_2235972_2235973;chr3L_2236049_2236050 chr3L_2235829_2235972;chr3L_2236050_2236729 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 K alternative_acceptor plx,noncoding_14842 chr3R + chr3R_1511993_1512762;chr3R_1511993_1512878 chr3R_1511993_1512866 chr3R_1511864_1511992;chr3R_1512879_1513091 14.29 10.00 9.09 13.33 16.67 NA 14.29 16.67 11.11 NA 28.57 10.00 14.29 11.11 15.38 18.75 14.29 14.29 8.33 11.11 16.67 NA 12.50 25.00 NA 10.00 25.00 NA 25.00 14.29 9.09 NA 10.00 11.11 25.00 20.00 16.67 14.29 16.67 9.09 NA 7.14 8.33 16.67 NA 16.67 NA 9.09 14.29 25.00 20.00 12.50 NA NA 16.67 NA NA 0.00 N intron_retention CG32809,I_chrX_1576815_1577129,I_chrX_1577031_1577129,CEI_chrX_1579569_1579679,RI_chrX_1585391_1586471,I_chrX_1589508_1589564 chrX - chrX_1569288_1569351 chrX_1569287_1569288;chrX_1569351_1569352 chrX_1567907_1569287;chrX_1569352_1571098 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 78.79 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Cdc42,I_chrX_19591186_19591967,I_chrX_19591567_19591967,I_chrX_19591671_19591967 chrX + chrX_19591259_19591967;chrX_19591567_19591967 chrX_19591186_19591967 chrX_19591968_19592067;chrX_19591086_19591185 0.34 0.13 0.80 0.43 0.87 0.69 0.59 0.66 0.44 0.22 0.00 0.55 0.65 0.40 0.33 0.32 0.52 0.55 0.23 0.50 0.13 0.00 0.35 0.23 0.41 0.35 0.34 0.14 0.80 0.61 0.70 0.27 0.23 0.35 0.00 0.19 0.23 0.27 0.35 0.21 0.29 0.40 0.47 0.11 0.67 0.15 0.34 0.38 0.36 0.00 0.00 0.32 0.38 0.00 0.49 0.14 0.21 0.00 K jcn_only_AA Gprk1,R_chr2R_238724_265876,RI_chr2R_357455_358274 chr2R - chr2R_210444_223881 chr2R_210463_223881 chr2R_223882_223902;chr2R_210281_210443 0.00 NA NA NA NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 2.50 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA 4.35 NA NA NA NA NA NA NA 3.33 0.00 4.76 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA NA 4.76 NA 5.00 K intron_retention CoRest,I_chrX_19416977_19417035 chrX + chrX_19416431_19417035 chrX_19416430_19416431;chrX_19417035_19417036 chrX_19416424_19416430;chrX_19417036_19417135 30.84 29.17 35.29 33.33 53.33 NA 41.67 25.00 39.29 NA 41.67 29.17 NA NA 36.36 50.00 NA NA NA 42.86 50.00 45.83 35.48 33.33 NA 28.57 26.09 NA 28.57 29.41 NA NA 26.09 40.00 23.81 20.00 24.14 27.59 29.63 30.00 NA 48.15 NA 14.29 14.29 12.50 NA 33.33 31.25 22.22 30.43 NA NA NA 35.71 23.53 41.67 40.00 K intron_retention Crag,I_chrX_8494280_8494352 chrX + chrX_8494280_8494342 chrX_8494279_8494280;chrX_8494342_8494343 chrX_8494180_8494279;chrX_8494343_8495559 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor I_chr3L_834336_834491,CG13887,Gr61a chr3L + chr3L_837946_838048;chr3L_837946_838021 chr3L_837946_838012 chr3L_837877_837945;chr3L_838049_838624 10.71 11.36 10.42 9.43 4.76 12.77 12.12 9.09 6.72 10.71 9.52 11.24 8.11 14.58 19.61 8.51 14.29 11.90 8.16 9.03 14.81 10.45 19.23 17.39 37.78 37.74 47.37 15.38 8.65 11.11 20.63 4.76 6.15 6.90 21.74 29.27 9.09 11.11 20.83 8.41 9.40 7.21 10.26 10.14 1.61 4.63 18.52 1.75 6.35 16.67 31.58 13.11 28.57 36.36 9.76 18.18 7.41 4.55 K intron_retention alphaPS4 chr2R + chr2R_11148765_11148828 chr2R_11148764_11148765;chr2R_11148828_11148829 chr2R_11148635_11148764;chr2R_11148829_11149191 0.00 NA NA 10.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA 1.22 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA NA NA 0.00 NA K intron_retention smid,I_chr3L_7375166_7375310,I_chr3L_7375435_7375508 chr3L + chr3L_7375435_7375486 chr3L_7375434_7375435;chr3L_7375486_7375487 chr3L_7375335_7375434;chr3L_7375487_7375574 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG17549,R_chr2L_19388305_19388473,RI_chr2L_19388570_19389427,I_chr2L_19388570_19389922 chr2L - chr2L_19388570_19389764;chr2L_19388570_19389926;chr2L_19388570_19389935 chr2L_19388570_19389427 chr2L_19388474_19388569;chr2L_19389936_19390022 28.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 28.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG12082,I_chr3L_3148062_3148262 chr3L - chr3L_3148087_3148248 chr3L_3148135_3148248 chr3L_3148249_3148343;chr3L_3147532_3148086 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA 87.50 100.00 NA 87.50 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA K alternative_donor CG5059,I_chr3L_20509233_20511440,I_chr3L_20509985_20510360 chr3L - chr3L_20509233_20512316 chr3L_20509233_20512067 chr3L_20509133_20509232;chr3L_20512317_20512503 90.48 97.14 91.49 95.31 87.88 92.31 95.83 95.92 94.95 94.12 92.31 90.00 90.79 95.12 89.80 90.41 90.70 97.44 92.73 92.62 96.77 57.78 89.19 90.48 84.62 92.45 97.78 80.00 74.29 84.62 91.30 82.61 84.00 90.00 89.29 85.37 90.24 94.44 93.75 85.42 87.50 87.18 97.44 83.33 94.44 86.11 94.00 87.50 95.51 80.56 89.13 92.59 81.82 78.12 93.75 96.97 90.00 84.00 K alternative_donor CG5933 chr3R + chr3R_19858412_19858481 chr3R_19858414_19858481 chr3R_19858482_19859975;chr3R_19858120_19858411 100.00 NA NA 100.00 NA NA 87.50 91.67 100.00 NA NA 92.31 NA NA NA 100.00 NA 88.89 NA 100.00 NA 90.00 NA NA NA 100.00 NA NA 87.50 100.00 87.50 100.00 NA 92.31 NA NA NA NA NA 100.00 100.00 88.89 NA 100.00 100.00 88.89 NA 91.67 100.00 NA NA NA NA NA NA NA NA NA K intron_retention I_chr2R_8641633_8641971,ox,I_chr2R_8648027_8648303 chr2R - chr2R_8644737_8644802 chr2R_8644736_8644737;chr2R_8644802_8644803 chr2R_8644604_8644736;chr2R_8644803_8645003 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.20 0.00 0.35 0.00 0.50 0.88 0.00 0.00 0.00 0.00 2.70 0.00 0.29 0.00 0.00 0.59 0.00 0.75 0.00 0.00 0.33 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Spargel,RI_chr3R_252723_254271,noncoding_14534 chr3R - chr3R_252348_252444 chr3R_252375_252444 chr3R_252445_252550;chr3R_252282_252347 88.24 87.10 87.88 85.19 84.71 88.89 88.35 88.59 89.35 94.00 91.30 89.47 84.06 79.31 87.91 88.89 82.67 89.41 91.09 85.46 93.24 91.67 86.44 88.24 93.02 94.03 80.00 84.62 86.57 83.65 92.59 84.21 87.67 88.36 82.09 91.53 86.67 87.32 83.95 92.75 84.91 90.34 89.33 88.06 82.93 86.54 89.66 82.32 88.77 92.50 86.17 90.48 90.00 86.67 91.89 89.47 94.29 82.30 K jcn_only_AD CG12576,RI_chrX_21878289_21882347,I_chrX_21882735_21882809,I_chrX_21882735_21883407,I_chrX_21882735_21883467,I_chrX_21882735_21883620,I_chrX_21882735_21883714 chrX - chrX_21882735_21882809;chrX_21882735_21883467;chrX_21882735_21883750 chrX_21882735_21883714 chrX_21882635_21882734;chrX_21883751_21883814 0.55 0.00 1.45 1.99 1.49 1.54 3.09 0.55 0.45 1.89 1.23 1.54 2.44 4.55 0.00 0.79 0.00 0.00 1.01 0.84 0.00 0.00 0.86 0.00 4.08 0.00 0.00 0.00 0.96 2.91 4.30 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 1.23 1.72 0.00 0.59 1.72 3.70 0.00 1.56 1.85 0.00 0.00 1.30 0.00 0.00 K intron_retention CG42271,RI_chrX_14127297_14127804 chrX - chrX_14126200_14126773 chrX_14126199_14126200;chrX_14126773_14126774 chrX_14125684_14126199;chrX_14126774_14127073 35.29 16.67 30.77 50.00 33.33 40.00 54.55 33.33 33.33 66.67 29.41 27.27 45.45 NA 37.50 NA 41.67 38.46 31.25 43.75 36.36 24.39 19.35 37.04 20.00 33.33 33.33 36.36 43.75 30.00 42.86 36.84 31.43 33.33 29.41 50.00 21.43 17.65 25.00 36.00 55.56 41.38 28.57 26.32 60.00 54.17 45.45 25.00 34.62 40.00 26.67 25.00 33.33 56.25 35.29 50.00 50.00 37.14 K intron_retention e(r) chrX - chrX_8799418_8800141 chrX_8799417_8799418;chrX_8800141_8800142 chrX_8798761_8799417;chrX_8800142_8800333 0.00 NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA K intron_retention CG14476,I_chrX_21474758_21476200,I_chrX_21475620_21475965 chrX - chrX_21475620_21476200 chrX_21475619_21475620;chrX_21476200_21476201 chrX_21475520_21475619;chrX_21476201_21476209 3.82 0.00 0.00 3.30 0.00 2.99 8.05 0.00 4.59 7.69 7.32 2.48 2.13 1.67 1.75 3.85 3.17 0.00 4.00 7.23 4.08 16.22 5.45 0.00 13.79 6.56 6.82 4.35 19.05 NA 1.54 NA NA 3.70 4.76 13.64 0.00 0.00 0.00 8.11 NA 3.82 2.13 6.25 NA 0.00 0.00 13.33 4.27 2.38 9.80 7.14 9.52 0.00 2.30 0.00 3.85 NA K intron_retention AP-47,I_chr3R_5385123_5385196 chr3R - chr3R_5385123_5385196 chr3R_5385122_5385123;chr3R_5385196_5385197 chr3R_5385023_5385122;chr3R_5385197_5385206 100.00 100.00 97.96 98.75 100.00 100.00 98.41 98.77 100.00 96.67 100.00 98.59 100.00 100.00 98.18 100.00 97.96 100.00 98.36 99.00 100.00 100.00 100.00 100.00 100.00 98.31 100.00 100.00 100.00 100.00 98.44 96.67 97.87 98.57 97.37 100.00 100.00 100.00 100.00 100.00 97.30 100.00 97.83 97.87 100.00 98.18 100.00 97.67 98.82 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 98.08 K alternative_donor Nedd4,I_chr3L_17526753_17527450,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17526749_17527450;chr3L_17526950_17527450 chr3L_17526753_17527450 chr3L_17527451_17527550;chr3L_17526708_17526748 24.44 24.00 27.78 10.71 29.41 51.06 27.69 32.26 19.72 35.71 18.18 37.36 7.41 31.43 34.04 20.63 35.00 26.19 20.00 22.12 20.69 37.50 20.97 38.89 29.17 22.50 32.43 22.22 38.89 38.24 37.50 28.57 50.94 23.44 29.41 29.55 17.39 18.18 24.44 20.00 36.84 31.18 22.58 16.13 35.00 18.18 13.64 18.18 24.18 14.29 19.57 17.65 33.33 27.78 32.00 23.81 13.33 21.43 K intron_retention Chro,RI_chr3L_22871119_22871250,I_chr3L_22871351_22871733 chr3L - chr3L_22871326_22871733 chr3L_22871325_22871326;chr3L_22871733_22871734 chr3L_22871251_22871325;chr3L_22871734_22871779 17.65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 17.65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Ubc-E2H,I_chrX_7984181_7984559,I_chrX_7984181_7984896,I_chrX_7984181_7987930,I_chrX_7984673_7985993 chrX - chrX_7984181_7985993 chrX_7984181_7985957 chrX_7984081_7984180;chrX_7985994_7986093 52.38 NA NA 68.18 NA NA NA 32.14 NA NA NA NA NA NA NA NA NA NA NA 52.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD lkb1 chr3R + chr3R_9502655_9502737 chr3R_9502667_9502737 chr3R_9502738_9503934;chr3R_9502444_9502654 86.24 88.10 78.05 83.72 NA 96.15 80.49 90.38 85.96 NA NA 87.50 NA NA 64.00 85.00 83.33 NA 96.15 86.21 80.00 87.50 85.48 89.19 81.48 81.82 81.25 72.41 82.00 84.62 73.33 86.49 83.75 92.31 89.47 86.84 83.33 87.88 88.64 86.27 84.44 86.79 80.77 82.35 83.87 86.11 91.43 93.75 92.59 92.86 87.04 100.00 90.48 NA 86.21 92.11 87.50 89.66 K alternative_donor Reg-5,I_chr2R_20676374_20676658,RI_chr2R_20676692_20676888 chr2R - chr2R_20676374_20676658 chr2R_20676374_20676501 chr2R_20676274_20676373;chr2R_20676659_20676691 98.61 98.77 100.00 98.61 97.83 98.25 100.00 100.00 100.00 97.56 97.62 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 97.45 100.00 93.10 99.01 95.74 98.31 100.00 100.00 97.96 96.77 98.18 98.33 100.00 98.36 98.84 96.49 95.16 98.43 97.56 99.16 98.91 98.00 99.19 97.30 98.67 97.87 96.63 98.36 96.83 99.02 97.59 98.88 98.00 98.68 98.84 98.36 98.82 99.00 98.33 K intron_retention CG14967 chr3L - chr3L_3217894_3217945 chr3L_3217893_3217894;chr3L_3217945_3217946 chr3L_3217618_3217893;chr3L_3217946_3218488 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.82 3.03 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention osa chr3R - chr3R_13522309_13523386 chr3R_13522308_13522309;chr3R_13523386_13523387 chr3R_13522092_13522308;chr3R_13523387_13523635 0.00 0.00 0.00 4.96 0.00 0.00 4.88 1.61 1.92 1.61 0.00 3.01 0.00 0.00 0.00 0.00 1.27 0.00 0.00 2.63 0.00 3.17 0.89 4.44 0.00 0.00 2.11 3.57 4.60 0.00 1.49 0.00 1.35 1.75 0.00 4.04 2.86 0.00 0.00 0.00 0.00 2.67 0.00 0.00 1.85 2.50 0.00 3.33 1.89 0.00 0.00 1.82 0.00 0.00 3.30 2.56 0.00 3.19 K jcn_only_AD Eps-15,I_chr2R_20660319_20660496 chr2R - chr2R_20660319_20660496 chr2R_20660319_20660463 chr2R_20660219_20660318;chr2R_20660497_20660521 98.17 97.35 97.54 98.19 98.47 95.10 99.00 98.35 98.33 99.07 99.23 96.79 96.00 99.03 100.00 99.01 96.61 99.14 96.30 97.63 98.10 93.68 99.49 95.70 99.01 98.86 98.08 98.18 97.26 96.95 97.39 100.00 99.36 96.84 97.14 94.51 98.57 99.40 99.03 91.75 98.61 96.02 95.40 99.26 95.50 99.24 98.32 100.00 99.41 98.63 99.41 98.17 97.06 97.25 95.42 96.30 97.95 96.25 K intron_retention CG4774,RI_chr3R_21512589_21512972 chr3R - chr3R_21512589_21512703 chr3R_21512588_21512589;chr3R_21512703_21512704 chr3R_21512489_21512588;chr3R_21512704_21512736 4.76 5.00 0.00 4.65 0.00 0.00 8.82 4.48 6.82 NA NA 5.41 0.00 8.33 7.69 3.90 0.00 8.00 11.11 3.57 7.41 NA 5.26 7.41 0.00 2.86 6.25 7.69 12.50 0.00 4.00 0.00 NA 7.27 6.45 0.00 11.76 12.90 0.00 5.56 0.00 3.57 0.00 12.50 4.00 6.00 4.76 3.85 5.26 0.00 5.66 11.76 9.09 0.00 2.56 5.71 0.00 0.00 K alternative_donor Gug,R_chr3L_8444636_8444874,I_chr3L_8455244_8456103 chr3L + chr3L_8462783_8463187 chr3L_8462792_8463187 chr3L_8463188_8463199;chr3L_8462665_8462782 50.00 NA NA 43.75 NA NA NA NA 55.56 NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA 50.00 NA 50.00 NA NA NA NA NA NA NA NA NA NA K jcn_only_AD InR,MIP08447,RI_chr3R_17441286_17441388 chr3R - chr3R_17429296_17444743 chr3R_17429296_17444448 chr3R_17428758_17429295;chr3R_17444744_17444758 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 98.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 97.67 100.00 95.24 NA 96.97 100.00 NA 100.00 100.00 NA 100.00 97.56 NA NA 100.00 NA 98.77 100.00 100.00 NA NA NA 100.00 100.00 NA 96.55 NA NA NA 100.00 NA NA NA K intron_retention CG7222 chr2R + chr2R_6701720_6701787 chr2R_6701719_6701720;chr2R_6701787_6701788 chr2R_6701632_6701719;chr2R_6701788_6702096 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 7.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Iap2,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CEI_chr2R_11826763_11827279 chr2R - chr2R_11820226_11820288 chr2R_11820225_11820226;chr2R_11820288_11820289 chr2R_11819695_11820225;chr2R_11820289_11821303 0.40 0.64 0.00 3.31 0.00 0.00 0.00 0.00 0.41 1.96 0.00 0.72 0.00 0.00 0.57 0.00 0.00 0.74 0.00 1.39 0.00 2.14 1.98 0.00 1.65 1.30 2.55 3.14 16.94 0.40 0.61 0.77 0.29 0.50 0.00 1.86 0.38 0.00 1.45 0.96 1.99 0.00 0.00 0.00 0.50 0.29 0.00 2.04 0.00 1.03 0.00 0.00 0.00 0.49 0.00 1.33 0.00 0.51 K intron_retention Nup98 chr3R - chr3R_19602598_19602653 chr3R_19602597_19602598;chr3R_19602653_19602654 chr3R_19602367_19602597;chr3R_19602654_19602829 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG32549,I_chrX_18286136_18286367,I_chrX_18286289_18286367,RI_chrX_18301919_18303082 chrX - chrX_18286136_18286367;chrX_18286289_18286367 chrX_18286194_18286367 chrX_18286368_18286467;chrX_18286073_18286135 99.47 100.00 99.47 99.54 100.00 100.00 99.26 100.00 99.73 100.00 98.52 98.95 100.00 99.40 99.51 99.11 100.00 99.34 100.00 98.89 100.00 99.54 99.43 99.10 100.00 100.00 98.88 99.70 98.17 98.78 94.65 97.37 99.01 99.24 99.44 98.56 99.38 99.61 99.31 98.74 100.00 99.41 100.00 99.16 98.39 100.00 100.00 100.00 99.67 99.53 98.93 99.46 98.33 100.00 99.48 98.08 100.00 100.00 K intron_retention Spf45 chr2L - chr2L_22960834_22960931 chr2L_22960833_22960834;chr2L_22960931_22960932 chr2L_22959877_22960833;chr2L_22960932_22961115 68.57 70.97 76.67 64.44 78.95 62.50 83.64 59.18 75.76 77.78 80.00 80.43 67.74 70.00 75.00 62.71 69.57 77.78 79.41 68.57 86.67 68.18 50.00 57.89 74.07 86.21 60.00 75.00 71.43 46.67 44.07 69.23 52.63 78.95 62.50 95.24 75.00 73.68 66.67 64.52 65.00 67.31 72.00 57.58 47.37 65.00 55.56 47.83 60.94 71.79 69.77 65.38 55.56 66.67 70.00 65.52 69.57 38.46 K jcn_only_AD CG6859 chr3L + chr3L_15137636_15137768 chr3L_15137650_15137768 chr3L_15137769_15139146;chr3L_15137556_15137635 2.61 2.90 2.60 0.96 5.00 3.17 6.90 0.00 1.43 3.57 0.00 3.06 4.08 2.00 6.06 0.00 3.12 0.00 1.82 3.57 2.27 2.94 2.94 1.18 4.55 3.03 0.00 5.88 5.80 1.85 1.61 1.67 2.67 5.19 1.89 2.94 0.00 0.00 0.00 4.00 3.12 5.43 3.12 0.00 3.28 3.45 0.00 2.61 0.00 2.70 2.82 1.72 0.00 1.59 1.39 1.79 2.04 2.61 K intron_retention CG9674,E_chr3L_16781559_16783017,E_chr3L_16781631_16782145,I_chr3L_16785706_16785748,I_chr3L_16793055_16800660 chr3L - chr3L_16781644_16781761 chr3L_16781643_16781644;chr3L_16781761_16781762 chr3L_16780915_16781643;chr3L_16781762_16782420 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 1.01 0.00 1.54 1.07 0.00 0.00 0.88 1.00 0.00 0.00 0.00 1.21 0.00 2.74 0.54 0.00 0.00 0.00 0.82 2.86 0.91 0.00 0.00 0.00 0.56 0.62 0.00 0.00 0.29 0.00 0.30 0.00 0.00 0.88 0.00 0.00 0.00 1.63 0.50 0.00 1.01 0.33 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention tomosyn,I_chrX_12531219_12531470,I_chrX_12534873_12541731,noncoding_23357,I_chrX_12548772_12549203 chrX + chrX_12543216_12545142 chrX_12543215_12543216;chrX_12545142_12545143 chrX_12543036_12543215;chrX_12545143_12545259 95.53 100.00 NA 100.00 NA NA 92.86 NA 92.00 NA 81.82 NA NA NA 100.00 85.71 NA 100.00 94.74 95.83 90.91 100.00 90.91 NA NA 87.50 NA NA 100.00 90.91 87.50 NA 100.00 100.00 NA 100.00 100.00 NA 88.89 100.00 92.86 95.24 NA 100.00 90.00 100.00 92.86 100.00 96.43 100.00 90.91 NA NA NA 88.89 NA 100.00 95.24 K intron_retention CG8908,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16156042_16156098 chr2R_16156041_16156042;chr2R_16156098_16156099 chr2R_16155085_16156041;chr2R_16156099_16156327 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA 2.22 NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K multi_cassette Sh3beta,I_chr3L_7358062_7358169,RI_chr3L_7358065_7358169,I_chr3L_7361085_7361784 chr3L - chr3L_7358062_7360658 chr3L_7358062_7358169;chr3L_7359311_7359541;chr3L_7359617_7360658 chr3L_7358170_7359310;chr3L_7359542_7359616 chr3L_7357965_7358061;chr3L_7360659_7361084 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 50.00 100.00 66.67 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 66.67 80.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 K alternative_donor vari,I_chr2L_20792267_20794059 chr2L - chr2L_20790721_20791229 chr2L_20790721_20791166 chr2L_20790622_20790720;chr2L_20791230_20791664 100.00 100.00 100.00 98.63 100.00 100.00 98.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.33 100.00 99.05 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.13 100.00 99.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.21 98.90 98.25 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention l(1)G0196,I_chrX_21900456_21903880,RI_chrX_21900456_21904036,I_chrX_21900456_21904601,noncoding_25159,I_chrX_21903160_21903227 chrX + chrX_21900456_21904471 chrX_21900455_21900456;chrX_21904471_21904472 chrX_21900356_21900455;chrX_21904472_21904538 83.33 81.40 75.93 62.75 71.88 78.12 87.04 74.63 84.62 93.55 94.74 72.60 96.00 80.00 82.93 88.64 81.25 80.65 92.59 80.95 96.30 88.24 75.36 82.76 86.49 88.00 87.14 93.10 88.24 88.10 79.41 87.18 91.07 89.47 85.42 65.00 83.93 81.08 77.22 80.00 79.41 83.84 82.14 90.00 97.96 85.11 78.12 91.67 85.71 77.05 71.21 83.33 71.43 80.00 80.00 82.22 84.75 83.78 K intron_retention Vha44,I_chr2R_12213936_12213993,RI_chr2R_12213936_12213995,I_chr2R_12220926_12223455 chr2R - chr2R_12213936_12213997 chr2R_12213935_12213936;chr2R_12213997_12213998 chr2R_12213838_12213935;chr2R_12213998_12214093 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.75 0.00 0.00 0.00 K alternative_donor Adf1,CG15908_CG9410 chr2R + chr2R_2549942_2550129 chr2R_2549954_2550129 chr2R_2550130_2550262;chr2R_2549797_2549941 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA 90.91 NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention CG2225 chr2L - chr2L_21666378_21668105 chr2L_21666377_21666378;chr2L_21668105_21668106 chr2L_21666063_21666377;chr2L_21668106_21668236 0.00 0.00 0.00 10.26 0.00 0.00 7.89 4.55 1.72 0.00 4.76 6.82 13.04 0.00 0.00 7.41 0.00 0.00 11.11 0.00 0.00 0.00 6.06 0.00 0.00 0.00 3.45 9.52 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.53 0.00 0.00 0.00 0.00 0.00 3.28 NA 0.00 0.00 NA 0.00 0.00 6.25 NA 0.00 K intron_retention I_chr2L_8140779_8156516,CG8498 chr2L - chr2L_8162064_8162122 chr2L_8162063_8162064;chr2L_8162122_8162123 chr2L_8161724_8162063;chr2L_8162123_8162237 3.33 3.51 0.00 6.25 6.90 2.22 0.00 1.54 5.71 5.71 0.00 5.26 0.00 0.00 0.00 3.64 0.00 0.00 5.41 3.85 5.41 6.25 3.28 2.63 3.85 4.65 5.26 10.42 15.56 6.45 6.38 0.00 0.00 1.96 3.03 10.71 5.17 0.00 3.77 4.11 9.09 1.67 0.00 0.00 0.00 3.61 3.85 5.66 4.11 0.00 3.33 0.00 2.90 5.41 0.00 2.70 2.16 3.30 K intron_retention Bet3,Nf-YA chr3L - chr3L_9432661_9435223 chr3L_9432660_9432661;chr3L_9435223_9435224 chr3L_9432250_9432660;chr3L_9435224_9435352 12.50 0.00 5.00 17.86 NA 0.00 14.29 13.51 14.29 25.00 NA 10.00 NA 0.00 12.50 33.33 0.00 21.05 NA 15.38 NA NA 20.00 17.65 NA 0.00 11.76 22.22 NA 0.00 19.05 NA NA 21.43 7.14 8.00 12.50 NA 12.50 17.86 14.29 5.71 NA 0.00 NA 26.67 16.00 NA 10.53 12.50 16.67 NA 8.70 16.67 0.00 9.09 12.50 4.76 K jcn_only_AD CG3961,E_chr3L_18871487_18875465,I_chr3L_18872561_18872646 chr3L - chr3L_18874352_18880160 chr3L_18874352_18875418 chr3L_18874178_18874351 0.00 NA NA NA NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 3.70 NA 0.00 0.00 NA 5.00 NA NA NA NA 4.76 3.85 0.00 0.00 0.00 5.41 NA NA NA 0.00 NA NA 0.00 0.00 9.09 0.00 0.00 0.00 NA 0.00 NA 4.17 2.56 8.33 K alternative_acceptor E(bx),I_chr3L_240127_240176,I_chr3L_246324_246699 chr3L - chr3L_240114_240176;chr3L_240111_240176;chr3L_240117_240176 chr3L_240127_240176 chr3L_240177_240276;chr3L_240027_240110 18.95 16.07 17.02 19.09 22.22 19.15 12.36 16.39 17.93 14.29 23.08 16.31 19.40 22.86 19.35 21.78 14.52 17.11 18.68 17.12 15.71 18.95 19.09 18.57 25.00 25.97 23.17 22.22 19.05 20.41 20.00 22.41 23.70 17.69 22.67 17.98 17.39 20.45 15.79 13.38 22.86 19.72 18.52 15.94 20.55 13.92 14.00 14.80 20.62 19.57 15.15 16.67 17.02 18.60 21.90 16.07 21.57 19.57 K alternative_donor Moe,I_chrX_8774434_8791759 chrX - chrX_8768435_8768544 chrX_8768435_8768535 chrX_8768222_8768434;chrX_8768545_8768932 21.91 23.76 21.19 19.03 21.60 22.05 23.40 13.98 21.86 20.81 17.80 19.29 24.28 21.59 17.56 21.28 20.16 16.75 16.60 20.65 18.17 25.41 23.15 24.21 22.74 20.14 24.05 23.23 24.38 22.16 19.13 22.08 20.42 22.22 21.42 14.88 22.74 21.57 23.21 23.76 22.90 22.46 20.22 23.65 21.03 21.12 23.50 21.91 20.42 22.89 24.18 20.60 23.69 22.95 20.50 22.22 22.78 21.99 K intron_retention noncoding_9335 chr2R + chr2R_20682246_20682317 chr2R_20682245_20682246;chr2R_20682317_20682318 chr2R_20682214_20682245;chr2R_20682318_20682737 53.33 NA NA 76.47 NA NA NA 38.46 36.84 NA NA 50.00 NA NA NA 65.38 NA NA NA 50.00 NA 50.00 NA NA NA NA NA NA 66.67 NA NA 70.00 NA NA NA NA NA NA NA 53.33 NA 42.86 NA NA 71.43 72.73 NA 75.00 50.00 50.00 NA NA NA NA NA NA NA 92.59 K intron_retention Aats-met chr3R - chr3R_10078551_10084352 chr3R_10078550_10078551;chr3R_10084352_10084353 chr3R_10078353_10078550;chr3R_10084353_10084617 0.00 0.00 NA 0.00 NA 11.76 0.00 0.00 4.35 NA NA 6.90 NA NA 10.53 NA NA NA NA 5.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 2.56 7.41 0.00 0.00 0.00 7.14 5.56 2.27 3.03 3.12 NA 5.00 0.00 0.00 0.00 0.00 8.00 0.00 3.57 NA 0.00 0.00 11.76 0.00 0.00 3.45 K alternative_last_exon CG17124,I_chr2L_10753685_10755903,noncoding_2470 chr2L - chr2L_10746079_10755903 chr2L_10754015_10755903 chr2L_10745782_10746078 chr2L_10753677_10754014 chr2L_10755904_10756003 50.00 53.85 57.69 45.83 52.38 50.00 64.00 72.22 70.37 20.00 57.14 57.89 63.16 72.22 60.87 75.00 55.00 50.00 69.57 67.86 56.25 25.53 50.00 42.31 30.43 44.44 48.15 21.88 31.82 53.85 62.96 29.41 59.26 64.71 44.44 47.37 46.67 40.91 31.25 52.38 25.00 56.60 63.16 54.17 19.23 38.46 30.43 55.56 69.57 28.00 38.24 47.37 33.33 18.75 62.07 30.00 24.00 57.69 K alternative_donor CG17977,RI_chr2R_3954264_3954689,RI_chr2R_3954799_3955080 chr2R - chr2R_3954799_3954912;chr2R_3954799_3954847 chr2R_3954799_3954935 chr2R_3954775_3954798;chr2R_3954936_3954942 18.34 NA NA NA NA NA 16.67 16.67 37.50 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 28.57 NA NA NA NA NA NA NA 20.00 NA K intron_retention dmondo,I_chr2L_21301528_21308287,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579 chr2L - chr2L_21287328_21287390 chr2L_21287327_21287328;chr2L_21287390_21287391 chr2L_21287204_21287327;chr2L_21287391_21287723 0.00 0.00 0.00 2.48 0.00 0.00 0.00 0.00 0.65 0.00 0.00 2.82 1.19 0.00 0.00 2.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 1.20 0.00 2.05 2.70 0.00 0.00 0.00 0.00 0.00 0.00 2.90 2.99 0.00 0.00 0.69 1.30 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.59 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 K intron_retention Spindly,F_chr2L_3528916_3528977 chr2L - chr2L_3528916_3529055 chr2L_3528915_3528916;chr2L_3529055_3529056 chr2L_3528817_3528915;chr2L_3529056_3529077 19.05 12.90 15.38 28.12 19.05 13.04 31.58 12.00 21.43 NA 23.08 14.58 21.74 19.05 14.29 15.38 20.00 15.38 18.75 17.86 10.00 11.76 22.86 23.53 56.25 36.36 24.00 28.57 57.14 17.39 50.00 37.50 19.23 17.65 33.33 43.75 30.77 28.57 22.22 14.29 NA 25.71 17.65 16.67 16.67 21.05 14.81 34.62 15.38 10.71 14.81 11.54 26.09 5.88 17.39 22.22 19.35 14.29 K intron_retention CG8646 chr2R + chr2R_8545124_8545179 chr2R_8545123_8545124;chr2R_8545179_8545180 chr2R_8545113_8545123;chr2R_8545180_8545187 0.00 0.00 12.50 0.00 NA 0.00 5.56 0.00 2.00 NA 0.00 12.20 7.41 0.00 0.00 6.25 0.00 0.00 0.00 2.27 15.38 NA 0.00 0.00 NA 0.00 NA NA NA NA 0.00 NA NA 2.56 NA NA 0.00 NA 0.00 5.26 NA 7.50 5.26 NA NA 17.39 0.00 NA 0.00 14.29 0.00 NA NA 0.00 10.71 0.00 NA NA K intron_retention Updo chr2R + chr2R_5472307_5472432 chr2R_5472306_5472307;chr2R_5472432_5472433 chr2R_5472269_5472306;chr2R_5472433_5473176 0.00 0.00 0.00 2.27 0.00 0.00 3.53 0.00 1.15 0.00 2.56 1.65 0.00 0.00 1.37 2.90 0.00 0.00 0.00 2.22 0.00 0.00 1.15 1.61 0.00 1.39 6.90 7.41 10.14 0.00 1.15 3.64 0.00 0.00 0.00 0.00 0.00 0.00 2.60 0.00 7.69 0.00 0.00 0.00 0.00 1.12 0.00 0.00 1.77 0.00 0.00 0.00 0.00 1.96 1.41 0.00 0.00 0.00 N cassette puc,CG7878,I_chr3R_3952846_3953762 chr3R + chr3R_3931818_3936798 chr3R_3931818_3933953;chr3R_3934101_3936798 chr3R_3933954_3934100 chr3R_3931090_3931817;chr3R_3936799_3937023 100.00 100.00 100.00 83.08 100.00 100.00 94.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.54 100.00 100.00 94.71 100.00 100.00 100.00 95.61 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA ari-1,I_chrX_18026911_18026975 chrX - chrX_18031080_18031608 chrX_18031084_18031608 chrX_18031609_18031714;chrX_18030475_18031079 88.00 NA 81.82 72.41 NA NA 97.06 94.87 92.55 100.00 81.82 78.43 NA 82.76 86.21 90.48 92.31 95.45 90.62 90.74 100.00 85.29 100.00 NA 90.00 88.00 85.00 NA 85.71 88.00 89.29 NA 92.98 85.29 NA NA 84.62 NA 73.91 NA NA 82.93 NA 86.21 NA 100.00 NA 97.14 86.36 NA NA NA NA NA 75.00 NA NA 79.07 K alternative_acceptor RI_chrX_11473566_11473702,roX2,noncoding_23149,I_chrX_11475074_11475402 chrX + chrX_11473270_11473384 chrX_11473270_11473381 chrX_11473254_11473269;chrX_11473385_11473432 63.64 NA NA NA NA NA NA 70.00 61.54 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 63.64 NA NA NA NA NA NA NA 45.45 NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA K intron_retention CG4572,FI_chr3R_15689914_15690042 chr3R - chr3R_15689914_15689997 chr3R_15689913_15689914;chr3R_15689997_15689998 chr3R_15689814_15689913;chr3R_15689998_15690036 83.33 60.00 80.00 91.49 100.00 70.00 62.86 89.19 69.57 90.00 83.33 79.55 83.33 77.27 75.00 90.24 77.78 66.67 95.45 88.24 84.21 76.47 84.62 92.86 93.75 92.59 81.08 95.00 96.88 66.67 84.62 90.00 90.00 73.33 90.91 85.71 70.00 53.85 78.57 83.33 94.44 78.79 88.24 86.36 NA 75.00 76.19 92.86 72.73 75.00 85.00 63.64 80.00 80.00 84.62 82.35 75.00 87.50 K intron_retention stv chr3L + chr3L_13474236_13474313 chr3L_13474235_13474236;chr3L_13474313_13474314 chr3L_13474136_13474235;chr3L_13474314_13474377 63.40 63.64 NA NA NA NA NA NA 63.64 NA NA 69.23 NA NA NA NA NA NA NA 63.64 NA 71.43 63.16 53.33 75.00 NA 76.92 36.84 77.78 NA NA NA 53.85 50.00 50.00 50.00 52.94 90.00 47.06 55.56 NA 52.94 NA 72.22 38.46 64.29 71.43 81.82 56.25 52.94 91.67 NA 69.23 NA NA 58.33 NA NA K alternative_donor CG17549,R_chr2L_19388305_19388473,RI_chr2L_19388570_19389427,I_chr2L_19388570_19389922 chr2L - chr2L_19388570_19389427;chr2L_19388570_19389764;chr2L_19388570_19389926 chr2L_19388570_19389935 chr2L_19388474_19388569;chr2L_19389936_19390022 25.00 NA NA 33.33 NA NA 50.00 20.00 25.00 66.67 NA 0.00 33.33 NA NA 0.00 NA NA NA 20.00 NA 50.00 NA NA NA NA NA NA NA NA NA NA NA 57.14 NA NA NA NA NA NA NA 60.00 NA NA NA NA 25.00 0.00 0.00 NA NA NA NA NA NA NA 20.00 NA K alternative_donor CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908142_9908424,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907784_9908531;chr2L_9907784_9908307;chr2L_9907784_9908405 chr2L_9907784_9908424 chr2L_9907756_9907783;chr2L_9908532_9908619 72.73 79.25 70.45 73.96 65.38 71.88 68.57 72.37 64.00 72.73 72.00 72.04 56.41 70.45 72.73 71.60 68.18 70.00 71.43 76.43 73.33 72.44 76.77 75.38 79.63 79.55 65.28 70.37 76.39 72.62 73.33 85.29 79.71 70.65 69.70 79.61 67.61 72.09 73.77 74.23 75.00 72.53 63.41 67.95 73.68 76.32 74.63 77.78 73.49 70.45 76.54 79.49 76.92 78.26 72.58 72.00 77.59 80.30 K alternative_acceptor tra2,REFI_chr2R_10491644_10491701 chr2R - chr2R_10491629_10491701 chr2R_10491634_10491701 chr2R_10491702_10491801;chr2R_10491620_10491628 33.33 35.71 33.33 25.00 NA 26.32 34.38 29.63 34.21 NA 33.33 32.35 35.29 35.71 40.00 40.00 35.71 30.00 35.71 30.00 26.32 33.33 33.33 40.00 41.67 22.73 42.86 33.33 NA 35.71 17.24 31.58 35.71 NA 35.00 30.00 53.33 56.25 35.00 31.82 33.33 28.57 23.08 38.46 16.67 28.57 37.50 33.33 37.14 30.77 29.17 NA 28.57 23.08 25.00 28.00 46.15 25.00 K intron_retention CG1827 chr2R + chr2R_5476768_5476820 chr2R_5476767_5476768;chr2R_5476820_5476821 chr2R_5476621_5476767;chr2R_5476821_5477927 5.26 9.09 0.00 6.45 NA NA 0.00 5.26 15.38 NA NA 9.09 NA NA 5.56 5.56 NA 0.00 0.00 7.41 NA NA 13.64 0.00 0.00 0.00 8.33 NA NA NA 0.00 0.00 0.00 13.64 10.53 NA 10.00 0.00 13.04 10.00 NA 6.82 NA 13.04 5.26 11.76 0.00 NA 0.00 0.00 0.00 7.69 NA 6.25 NA 0.00 3.57 0.00 K cassette CG18769,I_chr3L_6544367_6555421 chr3L + chr3L_6545050_6583703 chr3L_6545050_6555421;chr3L_6555519_6583703 chr3L_6555422_6555518 chr3L_6545041_6545049;chr3L_6583704_6583935 96.30 100.00 100.00 100.00 100.00 100.00 80.00 100.00 95.65 85.00 92.86 100.00 100.00 100.00 93.75 95.00 100.00 100.00 94.12 96.97 100.00 95.24 100.00 93.10 73.33 93.33 89.66 93.33 91.30 96.88 100.00 93.75 95.83 95.65 96.00 85.71 93.33 100.00 91.89 97.96 94.12 100.00 100.00 100.00 96.30 96.97 96.30 100.00 100.00 92.31 100.00 100.00 96.15 94.74 95.24 100.00 92.86 97.06 K intron_retention CG17549,I_chr2L_19387937_19387993,I_chr2L_19388570_19389922 chr2L - chr2L_19387770_19388039 chr2L_19387769_19387770;chr2L_19388039_19388040 chr2L_19387538_19387769;chr2L_19388040_19388093 36.61 NA NA NA NA NA NA NA 47.62 53.85 NA 45.45 NA NA NA NA NA NA NA 42.31 87.50 53.85 25.00 NA 30.77 NA NA NA 15.79 27.27 30.77 35.29 25.00 NA 29.41 12.50 33.33 NA 42.86 42.86 35.71 38.46 NA 50.00 37.50 38.10 50.00 23.53 60.00 NA 66.67 NA 31.25 NA NA NA 28.57 8.33 K jcn_only_AD Nedd4,I_chr3L_17532828_17532882,I_chr3L_17532828_17533787,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17532828_17533790 chr3L_17532837_17533790 chr3L_17533791_17533887;chr3L_17532728_17532827 85.92 88.57 88.44 94.80 85.83 81.05 66.67 87.43 83.69 86.61 97.20 80.50 84.15 84.62 80.34 84.21 82.65 90.85 82.14 85.00 93.48 90.09 88.36 88.83 92.11 79.05 85.42 87.23 79.59 88.49 87.04 81.93 85.06 85.07 81.40 82.78 85.36 85.92 90.11 80.33 85.92 87.70 90.53 87.65 91.51 88.12 84.44 90.38 84.32 89.47 87.00 79.02 80.46 84.13 86.54 86.96 91.25 92.47 K intron_retention RI_chrX_2612780_2612845,ttm50,crm chrX - chrX_2624740_2624798 chrX_2624739_2624740;chrX_2624798_2624799 chrX_2624132_2624739;chrX_2624799_2624922 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 1.71 1.83 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 K intron_retention Mfap1,CG5690 chr3L + chr3L_1942238_1942299 chr3L_1942237_1942238;chr3L_1942299_1942300 chr3L_1941316_1942237;chr3L_1942300_1942891 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 K cassette Top1 chrX + chrX_15214800_15215186 chrX_15214800_15214943;chrX_15215066_15215186 chrX_15214944_15215065 chrX_15214731_15214799;chrX_15215187_15215404 90.00 NA 85.71 83.33 NA NA 100.00 88.89 91.67 100.00 NA 90.00 NA 75.00 66.67 100.00 NA 75.00 NA 77.78 NA 60.00 90.00 100.00 100.00 NA 100.00 83.33 90.00 100.00 83.33 NA 81.82 100.00 NA 66.67 100.00 87.50 100.00 90.00 NA 81.82 NA 100.00 NA NA NA 80.00 90.91 100.00 100.00 NA NA NA 85.71 NA NA 88.89 K jcn_only_AA Graf,RI_chrX_15652351_15654288,RI_chrX_15652363_15654157,RI_chrX_15652363_15654499,RI_chrX_15654228_15654288 chrX - chrX_15652351_15654272 chrX_15652363_15654272 chrX_15654273_15654284;chrX_15652263_15652350 20.00 NA NA NA NA NA NA 18.18 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor BtbVII,I_chr3L_3150858_3150927,I_chr3L_3151185_3151263 chr3L + chr3L_3149161_3149627;chr3L_3149157_3149627 chr3L_3149134_3149627 chr3L_3149628_3150153;chr3L_3149092_3149133 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention betaTub60D chr2R + chr2R_20198354_20198415 chr2R_20198353_20198354;chr2R_20198415_20198416 chr2R_20198245_20198353;chr2R_20198416_20198660 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.32 0.27 0.00 0.83 0.81 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 K alternative_last_exon CG12163,I_chr3R_1068862_1077145,RI_chr3R_1069977_1077139 chr3R - chr3R_1065342_1077145 chr3R_1069977_1077145 chr3R_1065214_1065341 chr3R_1068874_1069976 chr3R_1077146_1077239 2.49 1.80 2.42 0.60 2.65 2.38 2.49 1.25 2.24 6.71 1.55 5.80 4.58 1.75 2.08 1.26 1.70 1.02 0.98 2.21 2.09 1.33 3.07 3.21 2.76 1.59 3.02 2.85 2.11 2.10 2.18 3.03 2.80 1.94 4.03 9.00 3.01 2.61 3.97 4.94 4.40 1.68 1.94 1.83 3.19 3.91 3.24 2.80 2.48 3.11 2.28 2.56 3.01 4.08 1.40 4.64 2.40 2.90 K jcn_only_AA I_chr3L_20306985_20307177,CG6680 chr3L + chr3L_20310517_20311483 chr3L_20310517_20310578 chr3L_20310328_20310516 100.00 100.00 NA 100.00 NA 100.00 96.67 100.00 100.00 NA NA 98.44 100.00 100.00 96.55 100.00 NA NA 100.00 100.00 NA 100.00 100.00 95.00 NA NA NA NA NA 100.00 100.00 97.83 100.00 100.00 100.00 NA 100.00 100.00 NA 98.08 100.00 100.00 NA 96.88 100.00 100.00 97.62 100.00 100.00 100.00 98.31 96.55 100.00 NA 100.00 100.00 100.00 100.00 K intron_retention CG6701,RI_chr2R_9866896_9867532 chr2R - chr2R_9862709_9862773 chr2R_9862708_9862709;chr2R_9862773_9862774 chr2R_9862432_9862708;chr2R_9862774_9862879 0.48 0.80 1.36 2.56 0.00 0.00 2.11 1.47 1.41 2.00 0.00 0.39 0.00 1.50 0.53 2.51 0.48 0.00 0.00 0.88 0.00 0.73 1.11 1.57 1.94 2.70 4.17 5.56 0.00 0.00 1.08 0.00 0.00 1.53 2.67 3.85 0.00 0.00 1.83 0.76 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.49 0.00 1.17 0.00 K intron_retention CG11943 chrX + chrX_19747195_19747284 chrX_19747194_19747195;chrX_19747284_19747285 chrX_19747093_19747194;chrX_19747285_19747847 0.00 0.00 3.33 2.06 0.00 0.00 1.32 1.19 2.61 0.00 0.00 1.57 0.00 4.44 3.90 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.76 1.47 1.59 0.00 0.00 3.03 0.00 0.00 0.00 0.00 1.83 0.00 0.00 1.28 1.54 1.50 1.06 0.00 1.42 0.00 0.00 0.00 2.44 0.00 0.00 1.74 0.00 0.72 0.00 0.00 0.00 1.23 0.00 0.00 0.00 K intron_retention CG7185 chr3L - chr3L_8304327_8304746 chr3L_8304326_8304327;chr3L_8304746_8304747 chr3L_8304082_8304326;chr3L_8304747_8304806 0.00 0.56 4.17 1.03 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.48 0.00 0.00 2.00 0.00 0.00 0.00 0.00 1.06 0.00 0.75 0.00 1.09 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.34 0.49 0.00 0.00 0.00 0.71 0.00 0.00 0.46 0.00 0.60 0.58 0.00 0.71 0.00 0.00 5.26 0.00 0.00 0.00 K alternative_acceptor plexA,RI_chr4_1036247_1047588,RI_chr4_1040642_1047395,RF_chr4_1044307_1047399 chr4 - chr4_1035928_1036050 chr4_1035979_1036050 chr4_1036051_1036244;chr4_1035592_1035927 97.30 100.00 94.12 98.68 100.00 90.91 98.61 96.81 95.79 100.00 96.43 98.53 97.78 97.83 97.06 98.65 97.37 97.30 98.41 97.10 100.00 100.00 96.97 100.00 100.00 97.14 97.50 100.00 100.00 96.67 97.87 100.00 100.00 95.83 95.45 92.86 93.75 92.86 94.44 96.97 94.74 98.59 97.50 96.97 88.24 95.35 96.30 96.43 95.29 100.00 92.31 94.74 100.00 100.00 100.00 95.83 100.00 93.10 K intron_retention Aats-lys chrX - chrX_9502326_9502751 chrX_9502325_9502326;chrX_9502751_9502752 chrX_9501662_9502325;chrX_9502752_9502885 2.53 1.44 6.98 2.75 2.53 2.99 4.85 0.00 3.14 0.00 2.53 2.01 1.43 2.70 2.80 3.03 1.49 2.02 2.60 2.12 0.00 7.58 1.50 2.03 7.69 4.44 8.26 3.47 4.59 2.04 2.27 4.71 1.71 2.78 2.44 1.67 4.58 0.00 2.01 2.60 5.31 2.82 1.41 2.56 1.28 3.15 3.42 2.05 3.64 3.30 1.52 1.19 1.89 0.75 2.61 1.43 3.21 1.28 K intron_retention dyn-p25 chr2L + chr2L_15006261_15006317 chr2L_15006260_15006261;chr2L_15006317_15006318 chr2L_15005961_15006260;chr2L_15006318_15006539 0.00 0.00 0.00 1.67 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 K alternative_donor CG12428,I_chr3R_23531574_23532266 chr3R - chr3R_23531574_23532276;chr3R_23531574_23531981 chr3R_23531574_23531786 chr3R_23531474_23531573;chr3R_23532277_23532366 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.29 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K alternative_donor F_chrX_15764251_15765393,CG16952,RI_chrX_15764587_15765393,I_chrX_15766003_15766047 chrX + chrX_15764432_15765393;chrX_15764522_15765393;chrX_15764620_15765393;chrX_15764599_15765393 chrX_15764247_15765393 chrX_15765394_15765493;chrX_15764236_15764246 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 N alternative_donor CG9338,CG31675 chr2L + chr2L_20865586_20866935 chr2L_20866001_20866935 chr2L_20866936_20867640;chr2L_20865412_20865585 1.30 1.90 1.26 8.20 0.61 1.71 3.03 2.77 2.71 0.00 1.40 2.80 1.02 3.31 1.59 1.88 2.26 1.34 1.66 2.04 1.38 4.88 2.78 0.54 1.00 0.00 2.13 0.00 0.00 0.00 1.30 2.88 0.00 2.46 0.92 1.27 1.15 1.39 0.81 0.98 0.00 2.11 1.96 0.68 0.00 1.16 0.68 1.18 2.64 0.91 2.00 0.82 0.76 0.48 1.78 1.08 1.25 2.56 K intron_retention CG42271,RI_chrX_14127297_14127804 chrX - chrX_14125275_14125683 chrX_14125274_14125275;chrX_14125683_14125684 chrX_14124725_14125274;chrX_14125684_14126199 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 4.17 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_last_exon noncoding_20505,plexB chr4 - chr4_52160_56499 chr4_54000_56499 chr4_52068_52159 chr4_53817_53999 chr4_56500_56567 95.45 95.45 100.00 91.18 100.00 94.12 93.02 97.14 93.02 NA 100.00 95.35 100.00 96.00 94.44 93.44 91.67 92.86 96.30 94.55 100.00 NA 94.74 100.00 91.67 78.95 100.00 NA 87.50 100.00 87.50 100.00 88.89 91.11 100.00 100.00 100.00 NA 100.00 94.74 NA 97.44 100.00 100.00 83.33 95.45 94.12 100.00 93.02 100.00 93.75 100.00 90.00 100.00 92.86 100.00 94.12 95.45 K intron_retention pcm chrX - chrX_19385713_19385771 chrX_19385712_19385713;chrX_19385771_19385772 chrX_19384618_19385712;chrX_19385772_19386003 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 NA 8.33 NA NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA 9.38 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention ND75 chrX - chrX_8145163_8145233 chrX_8145162_8145163;chrX_8145233_8145234 chrX_8144831_8145162;chrX_8145234_8145421 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention TfIIA-L chr3R + chr3R_23080451_23080737 chr3R_23080450_23080451;chr3R_23080737_23080738 chr3R_23080351_23080450;chr3R_23080738_23080746 3.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor Sap47,I_chr3R_11777573_11777784 chr3R + chr3R_11777564_11779879 chr3R_11777573_11779879 chr3R_11779880_11779956;chr3R_11777555_11777563 75.00 63.16 57.14 61.54 75.00 64.71 88.89 55.56 86.21 75.00 83.33 78.12 NA 66.67 64.71 NA 73.33 86.67 76.92 67.50 66.67 65.62 64.52 74.07 70.83 NA 88.89 100.00 65.79 75.00 82.35 66.67 67.57 85.71 77.78 62.50 81.08 57.69 58.62 65.85 73.33 75.00 NA 78.12 84.62 70.97 78.26 72.73 76.00 75.00 77.27 78.95 56.00 76.92 77.78 80.00 93.75 76.92 K alternative_donor CG17490 chr2L + chr2L_22431088_22432684;chr2L_22431020_22432684;chr2L_22431301_22432684 chr2L_22431120_22432684 chr2L_22432685_22433056;chr2L_22431014_22431019 7.69 4.76 7.41 7.14 15.00 4.35 14.89 10.42 8.77 10.00 4.76 8.51 12.00 18.52 12.90 11.11 12.00 12.00 12.90 6.12 4.35 8.70 5.88 5.26 9.09 6.25 11.76 10.00 6.67 0.00 3.92 8.33 0.00 3.70 7.14 10.00 6.67 0.00 6.67 5.41 14.29 12.24 11.11 6.25 8.33 8.70 4.76 5.56 8.47 13.64 7.69 5.00 21.05 14.29 5.26 5.88 4.00 0.00 K intron_retention Ubqn chrX + chrX_19579944_19580022 chrX_19579943_19579944;chrX_19580022_19580023 chrX_19578473_19579943;chrX_19580023_19581531 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 1.21 3.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.40 0.48 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.71 0.83 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG1646,I_chr3R_24640561_24640869,I_chr3R_24641816_24641874 chr3R + chr3R_24641449_24641521 chr3R_24641449_24641497 chr3R_24641204_24641448;chr3R_24641522_24641682 85.71 89.74 85.00 98.36 90.32 85.11 83.33 95.65 89.04 75.86 78.12 86.90 90.91 95.45 94.59 88.33 85.19 89.19 87.50 87.85 82.35 85.71 96.00 90.00 81.25 87.50 94.03 85.71 56.45 76.92 75.00 87.50 80.26 87.04 86.00 72.73 86.36 83.78 85.00 70.13 66.67 85.37 91.30 77.42 68.42 81.82 87.50 78.72 93.59 78.05 77.78 88.57 82.86 81.08 90.48 91.49 84.78 79.82 K intron_retention RI_chr3L_21188731_21188785,CG33054,CG33056 chr3L - chr3L_21193442_21193507 chr3L_21193441_21193442;chr3L_21193507_21193508 chr3L_21193095_21193441;chr3L_21193508_21193614 5.71 0.00 0.00 12.00 0.00 0.00 9.09 10.81 9.52 NA NA 7.41 NA 22.73 20.00 21.05 4.55 NA 0.00 5.71 7.69 NA 13.79 NA NA NA 5.56 11.76 NA 20.00 0.00 NA NA 10.34 NA NA 10.00 0.00 0.00 13.04 NA 0.00 NA 0.00 NA NA 0.00 NA 10.00 11.54 9.68 5.26 0.00 NA 0.00 0.00 0.00 NA K intron_retention I_chrX_19573364_19573474,CG14227 chrX - chrX_19582550_19582615 chrX_19582549_19582550;chrX_19582615_19582616 chrX_19582365_19582549;chrX_19582616_19582658 95.53 84.62 91.67 100.00 NA NA 100.00 95.24 96.30 NA NA 92.31 100.00 90.91 90.00 100.00 90.00 100.00 90.00 100.00 100.00 97.56 95.83 100.00 100.00 100.00 100.00 81.25 NA 100.00 86.67 100.00 100.00 94.12 100.00 91.67 92.86 100.00 92.86 100.00 88.89 94.44 92.31 85.71 100.00 91.67 100.00 92.86 93.33 93.33 100.00 87.50 NA 100.00 90.91 NA 100.00 91.67 K jcn_only_AD Mob2,RI_chr3L_11520443_11527440,CE_chr3L_11520917_11527526,RE_chr3L_11520925_11527489,RI_chr3L_11535932_11545929 chr3L - chr3L_11520917_11527489 chr3L_11520917_11527440 chr3L_11520825_11520916;chr3L_11527490_11527540 56.52 45.83 NA NA NA NA 48.72 54.55 52.94 NA NA 60.87 NA 65.00 NA 56.52 NA NA NA 38.10 NA 56.52 NA NA NA NA NA NA NA NA NA NA NA 75.00 61.90 NA NA NA NA 70.37 NA 48.28 NA 35.00 NA 73.53 NA NA 57.69 NA NA NA NA NA NA NA NA NA K intron_retention Atg18,I_chr3L_8182683_8182941 chr3L + chr3L_8180294_8180540 chr3L_8180293_8180294;chr3L_8180540_8180541 chr3L_8180118_8180293;chr3L_8180541_8180676 100.00 NA NA 100.00 NA NA 85.00 100.00 100.00 NA NA 100.00 NA NA NA NA 90.00 88.89 NA 100.00 NA 78.26 100.00 NA 100.00 91.67 NA NA NA NA 100.00 NA NA 100.00 NA 80.00 90.00 NA NA 81.82 NA 86.67 NA NA NA NA NA NA 88.89 NA 100.00 NA NA NA 100.00 NA NA NA K intron_retention CG32138 chr3L + chr3L_14062497_14063021 chr3L_14062496_14062497;chr3L_14063021_14063022 chr3L_14062186_14062496;chr3L_14063022_14063741 98.11 98.78 96.30 98.44 98.04 97.83 98.67 98.73 98.53 89.80 100.00 99.08 98.11 98.15 96.36 98.57 100.00 87.04 98.21 97.73 98.31 98.57 99.19 96.19 96.97 98.08 98.68 100.00 96.15 98.33 96.00 97.14 97.67 98.68 98.41 100.00 97.62 97.65 98.98 96.36 89.13 95.56 90.70 98.81 89.80 98.53 97.96 89.29 99.02 96.55 96.75 98.41 98.57 100.00 95.00 98.85 96.24 91.67 K intron_retention cact,I_chr2L_16313451_16314337,RI_chr2L_16314859_16315116,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16313451_16314450 chr2L_16313450_16313451;chr2L_16314450_16314451 chr2L_16313351_16313450;chr2L_16314451_16314708 9.78 5.92 10.78 23.66 5.36 13.51 10.53 10.98 8.45 11.36 15.66 9.76 7.00 7.41 13.83 16.56 6.60 12.79 6.84 15.89 9.30 4.62 9.55 9.66 10.53 14.13 10.88 19.74 13.08 5.50 13.33 6.49 11.61 12.58 6.52 22.22 7.22 6.25 6.67 8.11 11.61 8.70 7.04 6.15 10.00 9.63 9.25 17.19 11.23 6.93 8.77 9.78 9.78 12.39 10.28 9.73 9.57 12.35 K intron_retention tai,I_chr2L_9191814_9206231 chr2L + chr2L_9244587_9245385 chr2L_9244586_9244587;chr2L_9245385_9245386 chr2L_9244518_9244586;chr2L_9245386_9245712 6.56 NA NA 16.67 NA NA NA NA 7.14 4.35 NA NA NA NA NA NA NA NA NA NA NA 6.90 2.22 3.57 15.79 NA 0.00 14.29 7.41 14.29 NA 6.90 7.14 NA 0.00 2.70 6.82 8.33 6.45 13.64 6.67 9.52 NA 13.79 0.00 0.00 NA 3.92 NA 3.57 5.56 0.00 0.00 NA NA 8.70 0.00 0.00 K intron_retention Hr78,I_chr3L_21490089_21490390,CG33214 chr3L - chr3L_21488969_21489520 chr3L_21488968_21488969;chr3L_21489520_21489521 chr3L_21488699_21488968;chr3L_21489521_21489841 14.29 14.29 8.00 21.43 19.05 22.73 16.00 18.52 17.39 NA 13.33 21.62 33.33 17.65 10.71 15.38 16.67 0.00 17.65 20.51 27.27 NA 7.41 3.85 7.14 18.75 13.79 29.41 24.00 14.29 24.00 11.76 9.09 18.75 10.53 7.14 3.33 15.00 9.52 25.93 10.53 18.92 14.29 9.52 7.14 14.29 15.00 13.33 25.00 20.00 7.69 12.50 0.00 0.00 23.33 10.00 8.33 6.67 K alternative_donor iPLA2-VIA chr3L - chr3L_9856717_9856876;chr3L_9856717_9857292 chr3L_9856717_9857106 chr3L_9856421_9856716;chr3L_9857293_9857459 0.00 2.33 1.67 3.19 3.23 2.56 0.99 1.10 0.00 10.00 0.00 3.12 2.56 0.00 3.64 1.30 2.17 1.75 1.89 1.83 0.00 0.00 0.00 1.72 0.00 0.00 1.96 1.92 1.45 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 2.38 0.00 0.00 0.00 0.00 4.55 1.11 0.00 0.00 0.00 3.12 0.00 0.00 2.70 0.00 3.12 K jcn_only_AA Gp150,I_chr2R_18205316_18205386,RI_chr2R_18206133_18212679,I_chr2R_18211853_18212679,RI_chr2R_18212600_18212679,I_chr2R_18213233_18213308 chr2R + chr2R_18205243_18205338;chr2R_18205243_18205386 chr2R_18205243_18212679 chr2R_18205216_18205242 0.13 0.00 0.51 0.32 0.00 0.79 0.71 0.00 0.31 0.00 0.62 0.40 0.00 0.00 1.13 0.18 0.22 0.60 0.45 0.13 0.54 1.27 0.48 0.70 0.97 0.29 0.00 2.22 3.23 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.74 2.00 0.56 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.20 1.59 1.06 0.00 K intron_retention br,I_chrX_1517022_1518170 chrX + chrX_1517022_1518170 chrX_1517021_1517022;chrX_1518170_1518171 chrX_1516922_1517021;chrX_1518171_1518270 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 2.94 NA 0.00 0.00 0.00 0.00 0.00 6.67 NA NA 0.00 7.41 0.00 31.25 3.85 0.00 NA NA NA NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 3.70 NA NA NA 2.78 NA NA 0.00 K intron_retention CG8003,CG32068 chr3L + chr3L_10655724_10655783 chr3L_10655723_10655724;chr3L_10655783_10655784 chr3L_10654950_10655723;chr3L_10655784_10656256 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 1.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG11999,RI_chr3R_1180156_1180307 chr3R - chr3R_1180156_1180307 chr3R_1180156_1180282 chr3R_1180056_1180155;chr3R_1180308_1180407 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.51 100.00 100.00 99.13 99.64 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.78 99.15 99.08 99.41 100.00 99.22 100.00 100.00 100.00 100.00 99.22 98.73 100.00 100.00 100.00 100.00 100.00 99.36 99.28 100.00 99.46 100.00 99.29 100.00 100.00 99.54 99.45 99.48 100.00 100.00 99.45 99.40 98.84 99.50 99.31 99.40 99.40 99.36 100.00 K jcn_only_AD Snx6,RI_chr2L_8218680_8218853,I_chr2L_8230332_8238998 chr2L - chr2L_8218680_8219115 chr2L_8218680_8218853 chr2L_8218580_8218679;chr2L_8219116_8219215 0.33 0.31 0.00 0.29 0.48 0.45 0.00 0.60 0.37 0.00 0.00 0.61 0.94 0.00 0.40 0.00 0.45 0.90 0.00 0.90 0.49 0.49 0.00 0.52 0.48 0.42 0.25 0.00 0.49 0.45 0.00 1.02 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.33 0.40 0.82 0.50 0.00 1.07 0.32 0.27 0.00 0.24 0.59 0.22 0.00 0.34 0.00 1.01 0.27 0.36 0.81 K intron_retention CG33785 chr2R - chr2R_16531014_16531088 chr2R_16531013_16531014;chr2R_16531088_16531089 chr2R_16529965_16531013;chr2R_16531089_16531268 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 2.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.03 2.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 1.18 0.67 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 K intron_retention CG14803,CG14805 chrX + chrX_1763276_1763330 chrX_1763275_1763276;chrX_1763330_1763331 chrX_1762927_1763275;chrX_1763331_1763911 0.00 NA 0.00 0.00 4.55 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA NA 2.56 NA 25.00 6.25 6.67 NA 0.00 22.22 NA NA 0.00 14.29 NA 0.00 7.41 NA 0.00 6.25 NA 0.00 2.70 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 K alternative_donor CG13163,RI_chr2R_8209160_8209216 chr2R + chr2R_8209156_8209216 chr2R_8209160_8209216 chr2R_8209217_8209316;chr2R_8209060_8209155 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 3.85 NA NA 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 NA NA 5.00 NA 5.88 0.00 NA 5.26 NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 0.00 0.00 K jcn_only_AA Plip chr3R + chr3R_19584641_19584711 chr3R_19584641_19584699 chr3R_19584572_19584640;chr3R_19584712_19584774 100.00 100.00 100.00 95.16 98.04 100.00 98.41 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.44 100.00 98.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N alternative_acceptor CG31431 chr3R + chr3R_17697863_17697938;chr3R_17697863_17698131 chr3R_17697863_17697989 chr3R_17697704_17697862;chr3R_17698132_17698247 2.57 3.09 1.46 1.85 2.04 1.82 27.78 2.74 2.01 5.56 2.99 2.57 7.20 3.42 3.21 2.18 2.26 3.01 3.45 2.23 2.29 3.54 2.21 1.45 9.90 4.24 2.41 4.82 3.03 0.83 2.07 3.60 2.36 2.14 3.77 2.63 1.80 2.38 0.75 3.66 22.94 2.33 3.01 1.95 3.57 2.67 2.00 4.65 7.07 3.12 1.82 4.82 2.33 1.90 2.31 2.41 1.66 2.86 K intron_retention CG17471,RI_chr4_1213397_1214333,RI_chr4_1213397_1216053,RI_chr4_1214248_1214333,I_chr4_1214293_1214333,RI_chr4_1215991_1216053,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1213397_1216053 chr4_1213396_1213397;chr4_1216053_1216054 chr4_1213332_1213396;chr4_1216054_1216153 29.41 NA NA 29.41 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD chic,RI_chr2L_5976783_5980950,I_chr2L_5979705_5979818,I_chr2L_5979705_5979941,RI_chr2L_5979705_5979951,I_chr2L_5979705_5979953,I_chr2L_5979705_5980025,I_chr2L_5979705_5980213,I_chr2L_5979705_5980370,I_chr2L_5979705_5980558,I_chr2L_5979705_5980632,I_chr2L_5979705_5980639,RI_chr2L_5979705_5980734 chr2L - chr2L_5979705_5980952;chr2L_5979705_5980950 chr2L_5979705_5980846 chr2L_5979605_5979704;chr2L_5980953_5981025 5.31 7.69 2.79 3.48 3.86 2.74 9.97 2.18 4.04 12.16 5.88 4.12 4.29 5.31 6.06 5.49 4.59 12.34 3.40 3.24 7.55 2.86 14.74 13.23 14.42 4.31 26.19 11.11 11.66 2.28 3.76 3.13 1.33 2.30 6.11 12.01 11.58 15.65 9.35 3.88 4.94 2.70 3.06 4.17 1.30 7.61 16.67 1.58 2.62 16.13 19.01 9.32 12.02 30.39 1.10 17.46 14.62 2.10 K intron_retention CG42238,I_chr2L_20967747_20967858,I_chr2L_20967747_20968017,I_chr2L_20967747_20968635,I_chr2L_20967747_20968842,I_chr2L_20967747_20969164,I_chr2L_20967747_20993232,I_chr2L_20967747_21051685,RI_chr2L_20967747_21051705,noncoding_4091,I_chr2L_20969524_21051773,I_chr2L_20993378_21028634,I_chr2L_21011481_21028636,RI_chr2L_21028682_21051773 chr2L - chr2L_20967747_20968842 chr2L_20967746_20967747;chr2L_20968842_20968843 chr2L_20967726_20967746;chr2L_20968843_20968871 80.00 NA NA NA NA NA NA NA 88.89 NA NA 69.23 NA NA NA NA NA NA NA 75.00 NA 80.00 80.00 NA NA NA NA NA 81.82 NA NA NA 76.19 NA NA NA NA NA NA 70.59 NA 88.89 NA NA NA NA NA NA 91.67 NA NA NA NA NA NA NA NA NA K intron_retention pod1 chrX + chrX_6705286_6705349 chrX_6705285_6705286;chrX_6705349_6705350 chrX_6705150_6705285;chrX_6705350_6705450 0.00 1.25 0.00 0.85 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.75 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 1.54 0.00 K intron_retention muskelin chr2R - chr2R_8518491_8518546 chr2R_8518490_8518491;chr2R_8518546_8518547 chr2R_8518349_8518490;chr2R_8518547_8518654 0.00 NA NA NA NA NA 0.00 NA 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA K jcn_only_AD CG7337,I_chr2L_1910010_1910066,RI_chr2L_1911951_1913208,RI_chr2L_1912284_1913208,I_chr2L_1938620_1938887,I_chr2L_1942183_1942233 chr2L + chr2L_1912284_1913208;chr2L_1911870_1913208;chr2L_1911951_1913208 chr2L_1912235_1913208 chr2L_1913209_1913308;chr2L_1911851_1911869 0.00 NA NA NA NA NA 0.00 0.00 0.00 NA NA NA NA 0.00 0.00 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K alternative_donor trbd chr3R - chr3R_5535271_5535611;chr3R_5535271_5536695 chr3R_5535271_5536202 chr3R_5535110_5535270;chr3R_5536696_5536730 77.27 78.26 62.96 63.16 81.25 70.83 75.76 71.79 75.86 76.92 55.56 69.05 75.00 83.33 82.61 76.47 77.78 42.31 76.92 79.59 71.43 33.33 79.41 78.26 77.78 81.82 80.77 72.73 59.26 65.22 78.26 73.33 71.05 75.68 78.95 85.71 77.27 70.00 78.26 74.29 78.26 71.11 77.78 86.36 81.25 79.17 73.68 68.75 76.32 80.00 79.31 82.61 83.33 83.33 76.92 84.62 77.78 85.71 K jcn_only_AD CG9836,I_chr3R_4654041_4664113,I_chr3R_4749124_4756437 chr3R - chr3R_4648792_4648989;chr3R_4648792_4648982 chr3R_4648792_4648970 chr3R_4648564_4648791;chr3R_4648990_4649023 0.36 1.12 0.57 0.34 1.19 0.71 0.43 0.62 0.00 0.89 0.88 0.36 1.37 0.00 0.00 0.00 0.00 2.10 1.04 0.49 0.00 1.33 0.35 0.41 0.00 0.00 0.48 1.82 0.91 0.00 0.64 1.62 0.00 0.00 0.78 0.00 0.52 0.00 0.00 1.60 0.41 0.65 0.72 0.51 0.00 0.00 0.57 0.00 0.32 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG31211 chr3R + chr3R_7777961_7778368 chr3R_7777960_7777961;chr3R_7778368_7778369 chr3R_7777954_7777960;chr3R_7778369_7778390 100.00 100.00 100.00 90.00 100.00 NA 100.00 100.00 94.44 NA NA 100.00 100.00 87.50 NA 100.00 100.00 87.50 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 NA 90.00 100.00 NA 100.00 NA 94.74 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA NA 100.00 92.31 100.00 88.89 K alternative_acceptor tud,I_chr2R_17086183_17086333 chr2R + chr2R_17074553_17074616 chr2R_17074553_17074607 chr2R_17073474_17074552;chr2R_17074617_17075437 96.36 93.48 94.81 96.46 97.96 97.96 99.02 98.96 95.09 95.45 97.87 97.60 98.44 93.94 94.67 98.75 98.00 95.24 92.96 95.28 97.30 98.08 95.60 97.22 92.11 97.10 97.92 96.15 97.62 95.35 98.36 100.00 100.00 98.98 93.75 85.48 96.88 96.15 95.00 96.25 95.24 96.36 94.34 93.22 92.86 96.77 100.00 98.41 98.00 94.44 94.55 100.00 95.00 100.00 95.29 100.00 94.12 96.00 K intron_retention CG10353,I_chrX_11773365_11773426,I_chrX_11775936_11778830,I_chrX_11778617_11778830,RI_chrX_11780885_11780988 chrX - chrX_11773365_11773430 chrX_11773364_11773365;chrX_11773430_11773431 chrX_11773265_11773364;chrX_11773431_11773524 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 3.45 4.26 1.69 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.98 1.00 0.00 1.30 0.00 1.61 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 2.68 K intron_retention Tim10,CG42497,I_chr2R_17578506_17578580,I_chr2R_17578506_17578584 chr2R - chr2R_17578506_17578576 chr2R_17578505_17578506;chr2R_17578576_17578577 chr2R_17578437_17578505;chr2R_17578577_17578627 1.24 2.35 0.49 1.93 0.00 1.92 1.01 1.95 1.41 0.67 0.00 1.00 0.70 1.57 1.24 0.60 1.98 0.00 1.68 1.15 1.52 0.00 2.07 0.70 1.36 1.56 3.95 9.33 4.76 2.61 1.05 1.09 0.00 1.08 2.94 0.00 0.91 5.41 1.19 0.63 0.00 1.43 2.06 1.23 0.39 1.60 2.06 0.00 2.17 2.07 1.23 4.04 0.90 0.93 1.80 2.65 1.41 0.55 K intron_retention RI_chr4_980473_983026,noncoding_20846,R_chr4_980665_983026,R_chr4_980665_983029,R_chr4_980750_982876,R_chr4_980750_983026 chr4 + chr4_982974_983029 chr4_982973_982974;chr4_983029_983030 chr4_982970_982973;chr4_983030_983080 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 97.50 100.00 100.00 100.00 98.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette lqf,I_chr3L_7522287_7522807 chr3L + chr3L_7528745_7530075 chr3L_7528745_7529810;chr3L_7529870_7530075 chr3L_7529811_7529869 chr3L_7528643_7528744;chr3L_7530076_7530479 12.50 10.00 13.04 9.24 10.00 8.62 8.33 12.63 10.74 28.21 5.26 11.61 15.69 10.91 14.49 15.07 18.87 18.97 11.48 23.70 11.11 14.89 15.45 16.13 20.41 7.69 13.54 2.82 2.86 10.81 30.67 12.50 11.76 12.36 17.02 12.28 12.90 6.76 16.33 1.40 13.33 11.59 13.73 12.50 9.23 18.75 14.29 9.38 10.74 10.13 15.46 11.67 13.16 15.22 13.19 14.06 8.33 12.50 K alternative_donor CG15365,I_chrX_8950375_8950458 chrX - chrX_8950375_8950479 chrX_8950375_8950458 chrX_8950275_8950374;chrX_8950480_8950558 15.79 NA NA NA NA NA NA 28.57 15.79 NA NA 14.29 NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA 14.29 30.00 NA NA NA NA NA NA NA NA NA K alternative_donor CG9121,I_chr2L_5050018_5050128,I_chr2L_5050018_5050955,I_chr2L_5050249_5050657,Rpn11 chr2L - chr2L_5050018_5050955 chr2L_5050018_5050657 chr2L_5049918_5050017;chr2L_5050956_5050976 91.67 NA NA NA NA NA NA NA 75.00 83.33 NA NA NA NA NA 85.71 NA NA NA 83.33 NA 91.67 90.91 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA 83.33 100.00 75.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA NA K intron_retention CG15814,I_chrX_17743744_17743940 chrX - chrX_17744102_17744245 chrX_17744101_17744102;chrX_17744245_17744246 chrX_17743941_17744101;chrX_17744246_17744313 43.86 44.07 45.65 53.70 58.33 44.44 59.46 56.90 55.88 38.46 54.55 43.84 46.67 38.46 48.78 38.75 57.50 56.41 56.86 46.23 48.72 36.92 38.03 43.86 41.67 55.56 50.00 50.00 64.71 39.47 49.25 35.14 37.50 51.61 22.73 41.46 39.62 43.10 37.10 40.35 36.84 58.82 55.26 28.33 40.54 34.55 44.19 47.06 42.35 31.71 34.00 46.34 27.91 35.14 59.57 38.46 41.67 39.13 N intron_retention CG3635 chr2L + chr2L_22182055_22182737 chr2L_22182054_22182055;chr2L_22182737_22182738 chr2L_22181845_22182054;chr2L_22182738_22183329 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 72.60 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 86.36 100.00 100.00 100.00 73.91 85.48 100.00 100.00 79.66 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.16 K alternative_acceptor CG8121,RI_chr3R_5183458_5183705 chr3R + chr3R_5161975_5162204 chr3R_5161975_5162041 chr3R_5161880_5161974;chr3R_5162205_5162441 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Spn,I_chr3L_2511764_2512148 chr3L - chr3L_2510558_2511162 chr3L_2510576_2511162 chr3L_2511163_2511763;chr3L_2509762_2510557 100.00 100.00 NA 90.00 NA NA NA 90.91 95.24 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 94.12 100.00 100.00 NA 100.00 NA 87.50 NA NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 94.44 NA 100.00 NA 100.00 100.00 87.50 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA 100.00 K intron_retention pr-set7 chr3R + chr3R_10141926_10142198 chr3R_10141925_10141926;chr3R_10142198_10142199 chr3R_10141765_10141925;chr3R_10142199_10142589 0.00 0.00 5.88 10.71 NA 0.00 14.29 0.00 0.00 NA NA 7.32 0.00 6.25 NA 6.90 NA 14.29 NA 6.45 NA NA 0.00 NA NA 10.53 NA NA NA NA 9.09 NA NA 0.00 0.00 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA NA 12.50 2.94 NA 0.00 NA NA NA 0.00 NA NA NA K intron_retention CG8412,I_chr3R_5583152_5583200 chr3R + chr3R_5582920_5582977 chr3R_5582919_5582920;chr3R_5582977_5582978 chr3R_5582787_5582919;chr3R_5582978_5583151 0.00 NA NA 0.00 NA NA 4.76 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 5.88 NA 15.00 10.71 0.00 NA NA 0.00 13.04 13.33 NA NA NA NA NA NA 21.43 0.00 0.00 0.00 2.50 NA 0.00 NA 0.00 NA NA 0.00 NA 10.53 0.00 4.76 NA NA NA 0.00 NA NA NA K multi_cassette CG15611,I_chr2R_12996782_13000822 chr2R + chr2R_12996782_13000822 chr2R_12996782_12997447;chr2R_12997580_12997671;chr2R_12998006_13000822 chr2R_12997448_12997579;chr2R_12997672_12998005 chr2R_12996682_12996781;chr2R_13000823_13000909 96.77 100.00 95.83 90.00 93.75 100.00 100.00 95.24 97.44 100.00 93.33 96.30 100.00 100.00 100.00 100.00 100.00 87.50 100.00 97.73 90.91 83.33 100.00 93.33 91.67 94.44 100.00 100.00 100.00 91.67 86.36 90.00 92.31 100.00 100.00 87.50 94.12 100.00 100.00 100.00 92.31 96.77 100.00 100.00 90.00 94.74 93.33 83.33 100.00 100.00 94.44 91.67 88.89 100.00 96.15 92.86 100.00 100.00 K jcn_only_AA Kmn1,I_chrX_11466174_11466223 chrX - chrX_11466166_11466223 chrX_11466174_11466223 chrX_11466224_11466323;chrX_11466074_11466165 0.73 0.00 2.88 1.87 0.98 1.28 1.01 0.00 1.24 0.00 0.00 0.00 2.86 1.49 1.16 1.41 0.00 0.00 0.00 1.16 1.14 0.00 2.44 0.00 0.00 0.00 0.82 2.13 2.86 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.73 0.00 0.57 1.49 1.43 1.08 1.65 0.91 0.00 0.65 1.10 1.05 1.00 0.00 0.88 1.09 0.00 0.00 1.19 K jcn_only_AD CG1407,RI_chr2R_5918919_5919093,I_chr2R_5918925_5919213,RI_chr2R_5918952_5919084,RI_chr2R_5918952_5919093 chr2R - chr2R_5918925_5919093 chr2R_5918925_5919084 chr2R_5918852_5918924;chr2R_5919094_5919184 30.54 21.21 32.08 20.19 39.13 40.91 31.11 27.85 24.24 NA 33.33 17.02 NA 23.33 20.00 32.73 50.00 22.92 37.21 40.22 31.25 31.82 32.43 20.00 50.00 38.46 41.51 NA NA NA 32.00 NA NA 33.33 NA NA 26.47 18.75 30.00 14.29 NA 29.17 33.33 8.82 NA 17.50 19.44 NA 31.08 12.12 29.27 25.93 33.33 16.67 37.50 14.29 34.38 NA K intron_retention Mi-2,Su(Tpl) chr3L - chr3L_19890514_19902346 chr3L_19890513_19890514;chr3L_19902346_19902347 chr3L_19890418_19890513;chr3L_19902347_19902410 19.05 33.33 14.29 19.05 25.00 NA 22.22 31.03 14.00 NA NA 13.04 19.05 15.79 21.43 16.67 13.64 NA 16.67 4.35 NA 50.00 10.53 33.33 NA NA 5.00 16.67 NA NA 28.57 NA NA 19.23 NA NA 6.67 NA NA 25.00 NA 14.29 NA 19.05 NA NA NA NA 25.00 NA 22.22 NA NA NA 14.29 NA NA NA K intron_retention CG41378,I_chr2RHet_1545717_1605870,I_chr2RHet_1545717_1621473,I_chr2RHet_1545717_1621569,RI_chr2RHet_1606049_1621284 chr2RHet - chr2RHet_1605787_1605870 chr2RHet_1605786_1605787;chr2RHet_1605870_1605871 chr2RHet_1605713_1605786;chr2RHet_1605871_1605970 97.30 98.31 93.65 95.65 97.73 96.88 96.04 99.25 97.30 96.00 100.00 97.92 93.22 96.83 98.67 96.15 98.44 98.11 93.59 96.97 100.00 97.30 100.00 98.36 97.92 98.75 98.21 95.24 98.21 95.45 97.59 90.70 92.86 94.92 97.30 100.00 97.83 96.00 98.48 98.98 98.11 97.87 98.11 98.53 97.83 95.83 97.01 96.83 97.01 98.21 94.59 92.86 95.92 93.44 98.80 95.77 95.92 96.43 N cassette RpL11,I_chr2R_15330246_15330292,I_chr2R_15330603_15330817,snoRNA:Psi28S-2444 chr2R + chr2R_15330604_15330817 chr2R_15330604_15330664;chr2R_15330745_15330817 chr2R_15330665_15330744 chr2R_15330318_15330603;chr2R_15330818_15330917 0.19 0.15 0.09 0.06 0.19 0.20 0.43 0.24 0.21 0.25 0.13 0.21 0.16 0.13 0.15 0.13 0.16 0.10 0.15 0.18 0.14 0.74 0.12 0.19 0.17 0.18 0.22 0.20 0.87 0.23 0.93 0.25 0.15 0.19 0.23 0.18 0.33 0.21 0.20 0.37 0.12 0.20 0.17 0.37 0.21 0.24 0.24 0.20 0.42 0.24 0.26 0.17 0.19 0.18 0.14 0.24 0.16 0.14 K intron_retention CG34348 chrX + chrX_11234531_11234639 chrX_11234530_11234531;chrX_11234639_11234640 chrX_11234462_11234530;chrX_11234640_11234778 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 4.76 NA NA NA 0.00 NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 9.52 0.00 0.00 NA NA NA NA 6.12 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 K cassette Hydr2,RI_chr2L_3164075_3164159 chr2L + chr2L_3164075_3166969 chr2L_3164075_3166527;chr2L_3166652_3166969 chr2L_3166528_3166651 chr2L_3163975_3164074;chr2L_3166970_3167139 0.42 0.29 0.28 0.00 0.00 0.32 0.39 0.00 0.40 0.00 0.39 0.57 0.00 0.45 0.00 0.33 0.00 0.39 0.42 0.58 0.78 1.36 0.67 0.72 0.80 0.69 0.72 0.79 0.65 0.56 2.75 0.44 0.22 0.41 0.71 0.00 0.34 0.27 0.37 1.16 0.00 0.39 0.88 0.58 0.74 0.57 0.60 0.29 0.33 0.76 0.72 0.52 0.00 0.54 0.51 0.70 0.29 0.00 K mutually_exclusive par-1,EFI_chr2R_15361473_15362032,RI_chr2R_15361473_15362035,I_chr2R_15361473_15366246,I_chr2R_15362147_15365120,F_chr2R_15362147_15365138,I_chr2R_15362147_15365165,RI_chr2R_15363358_15365120,I_chr2R_15363358_15366246,I_chr2R_15365210_15370456 chr2R + chr2R_15361473_15366256,chr2R_15366371_15370456 chr2R_15361473_15365120,chr2R_15365210_15370456 chr2R_15366257_15366370 chr2R_15365121_15365209 chr2R_15361373_15361472;chr2R_15370457_15370556 3.23 4.55 2.94 0.00 3.45 0.00 3.45 0.00 1.19 0.00 0.00 2.27 7.14 0.00 3.45 0.00 0.00 0.00 4.76 1.64 4.00 11.36 2.56 2.63 5.26 3.23 4.00 4.55 15.38 3.57 4.00 0.00 6.67 2.17 5.56 4.55 2.70 4.17 2.70 3.70 11.11 2.04 0.00 4.17 5.56 4.76 3.57 12.50 1.79 3.23 2.94 0.00 5.56 6.67 2.70 5.26 2.86 0.00 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2814894;chr2R_2815657_2816013;chr2R_2816342_2817327;chr2R_2817604_2817753 chr2R_2814895_2815656;chr2R_2816014_2816341;chr2R_2817328_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention MB6.chr3L.pasa.7892 chr3L - chr3L_19435494_19439134 chr3L_19435493_19435494;chr3L_19439134_19439135 chr3L_19435039_19435493;chr3L_19439135_19439461 0.98 0.00 NA 0.00 NA NA NA 8.33 7.89 13.33 NA 5.26 NA 0.00 NA 0.00 NA NA NA 3.85 NA NA 10.00 6.90 0.00 NA 8.33 NA 2.94 NA 0.00 0.00 16.67 4.55 0.00 11.11 17.39 0.00 6.25 2.78 0.00 14.29 NA 5.56 0.00 0.00 0.00 13.33 8.33 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 1.96 K alternative_donor CG16758,I_chr3L_2501142_2502594,I_chr3L_2502724_2503142 chr3L - chr3L_2500463_2502594 chr3L_2500463_2502390 chr3L_2499691_2500462;chr3L_2502595_2502694 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG12182,I_chr3L_2629527_2629921 chr3L - chr3L_2597143_2597193 chr3L_2597142_2597143;chr3L_2597193_2597194 chr3L_2596958_2597142;chr3L_2597194_2599061 0.00 NA NA 16.67 NA NA 0.00 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA NA 11.76 NA NA NA NA NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA K jcn_only_AD sqh,I_chrX_6118043_6119039,I_chrX_6118150_6118725,I_chrX_6118150_6118729,I_chrX_6118150_6118790,I_chrX_6118150_6118800 chrX - chrX_6118150_6118729;chrX_6118150_6119035;chrX_6118150_6118725;chrX_6118150_6118949 chrX_6118150_6119039 chrX_6118050_6118149;chrX_6119040_6119139 98.69 98.51 98.61 99.43 98.75 98.79 99.01 99.09 98.79 99.17 99.38 99.00 98.71 98.89 83.66 98.91 98.58 99.30 99.10 99.05 98.23 98.86 98.02 98.69 99.79 98.55 98.61 98.40 97.01 98.76 98.66 97.85 97.37 98.75 98.15 99.45 98.47 98.30 99.15 98.45 98.39 98.53 98.17 98.59 98.22 98.93 99.12 97.39 98.37 98.72 98.79 98.86 98.43 98.70 98.20 99.19 97.67 98.25 K intron_retention CG1607 chr3R + chr3R_27215037_27215102 chr3R_27215036_27215037;chr3R_27215102_27215103 chr3R_27214891_27215036;chr3R_27215103_27215317 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention IP3K1,CG4036 chr2L + chr2L_9786803_9787149 chr2L_9786802_9786803;chr2L_9787149_9787150 chr2L_9786686_9786802;chr2L_9787150_9787259 0.00 0.00 0.00 5.41 0.00 0.00 0.00 0.00 3.51 0.00 NA 0.00 0.00 0.00 3.45 2.56 NA 0.00 0.00 0.00 0.00 1.41 2.50 0.00 4.76 0.00 0.00 2.70 1.92 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 3.85 3.33 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 2.27 0.00 K alternative_acceptor tan,R_chr3L_6048520_6048578,R_chr3L_6048608_6048676 chr3L + chr3L_6048764_6048859 chr3L_6048764_6048816 chr3L_6048696_6048763;chr3L_6048860_6048925 96.55 84.62 93.75 96.55 91.67 100.00 96.15 96.15 100.00 88.89 100.00 95.83 100.00 91.67 95.24 96.15 100.00 100.00 100.00 95.24 93.33 100.00 96.00 100.00 94.44 92.31 100.00 100.00 100.00 100.00 94.12 87.50 92.31 96.55 100.00 75.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 87.50 100.00 100.00 93.10 100.00 96.43 92.86 100.00 100.00 85.71 92.31 93.75 85.71 K intron_retention CG4119 chrX + chrX_5560355_5560409 chrX_5560354_5560355;chrX_5560409_5560410 chrX_5560108_5560354;chrX_5560410_5560501 94.44 89.47 93.75 100.00 100.00 93.75 100.00 100.00 94.74 100.00 94.12 96.67 100.00 100.00 100.00 100.00 92.86 84.21 93.33 96.00 87.50 92.31 97.73 86.36 91.30 95.83 96.15 95.00 94.74 96.55 76.47 92.31 91.67 100.00 88.89 100.00 90.24 95.65 86.96 93.10 100.00 96.97 100.00 86.67 94.44 95.45 94.74 90.00 100.00 85.00 90.00 83.33 92.86 92.86 90.91 94.74 92.31 85.71 K cassette Actn,I_chrX_1929229_1936079,I_chrX_1929235_1930613 chrX - chrX_1924893_1936079 chrX_1924893_1928987;chrX_1929235_1936079 chrX_1928988_1929234 chrX_1924793_1924892;chrX_1936080_1936110 99.20 100.00 98.00 100.00 100.00 100.00 100.00 100.00 100.00 98.55 100.00 98.67 100.00 100.00 97.92 100.00 100.00 100.00 100.00 99.04 96.77 97.06 100.00 100.00 97.83 100.00 97.37 100.00 95.28 98.80 100.00 98.28 98.04 98.51 98.39 100.00 99.12 98.59 99.02 99.20 98.31 98.90 100.00 99.12 100.00 98.95 100.00 99.40 98.75 98.44 98.82 97.67 98.36 100.00 100.00 100.00 98.18 100.00 K alternative_acceptor Pfrx,I_chrX_19390217_19400515,RI_chrX_19390217_19403850,RI_chrX_19392914_19400518,RI_chrX_19399882_19400518,I_chrX_19400112_19400515,RI_chrX_19400112_19400518,I_chrX_19400271_19400518 chrX + chrX_19400271_19400515;chrX_19400271_19400518 chrX_19400271_19400325 chrX_19400171_19400270;chrX_19400519_19400615 40.00 40.00 40.00 NA NA NA 50.00 66.67 NA 40.00 NA 60.00 NA 40.00 25.00 50.00 60.00 50.00 50.00 35.29 NA NA 25.00 NA NA 50.00 60.00 40.00 NA NA 40.00 NA 33.33 57.14 NA NA NA NA 37.50 NA NA 37.50 NA 50.00 NA NA NA NA 54.55 NA 37.50 NA NA NA 50.00 50.00 33.33 40.00 K intron_retention CG14741 chr3R - chr3R_7897251_7898049 chr3R_7897250_7897251;chr3R_7898049_7898050 chr3R_7897104_7897250;chr3R_7898050_7898194 46.91 49.48 49.33 39.26 50.72 49.38 48.98 50.00 55.41 41.67 57.69 44.78 66.07 50.00 51.11 48.05 44.74 60.87 48.75 41.96 50.88 55.05 49.34 45.61 46.91 40.96 39.06 40.54 50.00 39.64 45.98 44.44 45.07 49.57 43.06 48.35 42.98 48.31 45.71 24.79 34.38 54.27 44.93 41.94 44.44 55.36 49.23 40.00 46.85 47.92 44.83 45.33 53.70 51.28 44.74 44.83 48.10 39.13 N alternative_donor Lag1,RI_chrX_6153758_6153930,I_chrX_6153758_6155077,RI_chrX_6153758_6161036,I_chrX_6160907_6161036 chrX - chrX_6153758_6154631;chrX_6153758_6153930;chrX_6153758_6161036;chrX_6153758_6154193;chrX_6153758_6154358;chrX_6153758_6160439 chrX_6153758_6155077 chrX_6153658_6153757;chrX_6161037_6161136 0.97 1.22 0.83 0.29 1.12 0.52 0.61 0.54 0.75 1.28 0.49 0.50 0.46 0.97 0.42 0.67 1.53 0.91 1.69 0.76 1.37 1.48 1.17 0.32 2.08 3.11 5.15 2.48 1.07 1.49 1.38 1.57 1.10 0.27 0.47 0.92 1.30 0.88 1.81 0.74 2.16 0.22 0.51 1.16 2.45 0.34 0.82 0.94 0.70 0.42 0.96 1.18 4.08 1.69 0.40 1.91 3.33 3.36 K cassette Mef2,CREFI_chr2R_5809509_5845628,RI_chr2R_5846889_5846948 chr2R - chr2R_5809509_5845628 chr2R_5809509_5828440;chr2R_5828459_5845628 chr2R_5828441_5828458 chr2R_5809499_5809508;chr2R_5845629_5845671 77.35 90.91 77.78 52.63 NA 55.56 52.63 68.18 88.89 NA 75.00 60.00 NA 81.82 90.00 71.43 NA NA 63.64 76.47 88.89 NA 82.35 90.00 NA 66.67 81.82 NA NA 90.91 90.91 NA NA 63.16 NA NA 69.23 87.50 100.00 85.00 66.67 72.00 87.50 71.43 NA 69.23 NA 78.57 63.16 NA 78.57 88.89 NA NA 76.92 NA NA NA K alternative_acceptor Cap chrX - chrX_16486780_16486976 chrX_16486828_16486976 chrX_16486977_16487116;chrX_16483660_16486779 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD None chrU + chrU_1182323_1183262;chrU_1178980_1183262 chrU_1179335_1183262 97.03 96.40 97.33 97.37 99.03 95.48 96.60 99.68 97.70 98.67 98.68 97.83 96.50 97.16 96.34 97.41 95.51 96.36 97.25 96.58 98.94 99.08 95.38 93.89 98.39 97.76 99.24 95.92 98.36 97.03 97.46 95.76 85.25 96.49 87.04 98.25 96.47 94.52 97.94 98.32 96.93 97.55 97.76 98.48 94.96 98.35 98.14 97.67 96.55 93.94 95.21 93.00 96.43 96.52 99.18 96.69 96.23 96.51 K intron_retention CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1523970_1524026 chr3L_1523969_1523970;chr3L_1524026_1524027 chr3L_1523914_1523969;chr3L_1524027_1524139 0.00 0.00 3.23 0.00 0.00 0.00 2.70 0.00 0.00 NA 7.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 8.33 6.67 2.86 NA 11.76 0.00 3.23 0.00 0.00 6.00 0.00 0.00 0.00 0.00 0.00 0.00 22.73 0.00 0.00 0.00 0.00 0.00 0.00 23.08 2.50 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Jupiter,I_chr3R_7417030_7419354,I_chr3R_7417630_7417716,I_chr3R_7418347_7445425,RI_chr3R_7442793_7445425 chr3R - chr3R_7417030_7417716 chr3R_7417029_7417030;chr3R_7417716_7417717 chr3R_7416930_7417029;chr3R_7417717_7417734 90.00 90.91 NA 71.43 NA NA 100.00 88.89 94.12 NA NA 90.91 NA NA NA 90.00 NA NA NA 93.33 88.89 100.00 85.71 75.00 NA NA 70.00 90.00 NA NA NA 90.00 NA 88.89 87.50 NA 88.89 88.89 88.89 94.44 90.00 100.00 NA NA 81.82 92.86 88.89 100.00 92.31 90.00 94.44 NA NA 100.00 88.89 100.00 72.73 NA K alternative_donor CG11984,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4839215_4839561;chr3R_4839215_4839851;chr3R_4839215_4839728;chr3R_4839215_4839889;chr3R_4839215_4839799 chr3R_4839215_4839655 chr3R_4839038_4839214;chr3R_4839890_4839901 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention REFI_chr2R_10491644_10491701,CG12868 chr2R - chr2R_10492611_10492671 chr2R_10492610_10492611;chr2R_10492671_10492672 chr2R_10491953_10492610;chr2R_10492672_10492842 0.00 NA NA NA NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA NA 0.00 15.00 NA 0.00 NA NA NA NA 10.00 NA NA NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA NA K intron_retention CG18596,I_chr3R_18203637_18203690,I_chr3R_18209085_18209133 chr3R + chr3R_18201969_18202031 chr3R_18201968_18201969;chr3R_18202031_18202032 chr3R_18201639_18201968;chr3R_18202032_18202926 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.59 97.14 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG15107,I_chr2R_14859289_14859333 chr2R - chr2R_14859289_14859333;chr2R_14859269_14859333 chr2R_14859281_14859333 chr2R_14859334_14859398;chr2R_14859203_14859268 57.14 52.94 50.00 60.00 57.14 58.33 50.00 50.00 58.97 62.50 58.82 50.00 60.00 66.67 42.86 61.11 40.00 56.52 55.56 56.00 52.38 58.33 65.38 57.69 55.00 57.14 56.52 62.50 56.00 64.00 48.15 52.27 68.29 50.00 39.13 55.56 61.54 66.67 58.06 65.31 67.50 58.33 64.00 50.00 58.54 45.45 53.85 49.02 64.58 70.97 52.17 43.75 54.55 58.82 65.38 51.61 60.61 59.77 K intron_retention Nhe2,I_chr2L_21122390_21122912 chr2L + chr2L_21129083_21132033 chr2L_21129082_21129083;chr2L_21132033_21132034 chr2L_21128779_21129082;chr2L_21132034_21132685 4.50 0.00 7.41 2.63 0.00 6.25 11.76 6.67 2.63 5.00 0.00 11.54 NA 0.00 5.88 0.00 4.35 6.45 0.00 7.81 0.00 6.67 5.00 2.00 5.56 0.00 6.00 20.00 0.00 6.82 3.23 0.00 14.71 3.92 9.68 3.39 1.49 2.04 4.55 10.64 0.00 1.41 0.00 4.44 7.69 6.25 5.00 28.57 3.33 0.00 6.90 7.41 7.69 7.14 0.00 0.00 0.00 5.26 K intron_retention crol,I_chr2L_11799403_11802904 chr2L - chr2L_11800323_11802286 chr2L_11800322_11800323;chr2L_11802286_11802287 chr2L_11800155_11800322;chr2L_11802287_11802336 16.67 13.56 17.43 20.72 16.16 18.10 28.90 16.57 18.31 7.69 20.72 24.87 18.10 17.05 21.43 18.80 17.27 20.20 21.78 20.70 15.79 26.97 13.68 14.08 14.50 25.47 17.82 28.43 11.11 14.68 20.99 13.21 10.00 16.67 14.46 12.00 13.11 11.76 10.39 10.11 16.22 19.72 23.30 11.36 10.00 16.67 11.11 17.86 20.11 13.51 13.86 11.32 6.67 17.46 19.01 17.72 9.88 17.50 K alternative_donor CG9140,I_chr2L_6062436_6062583 chr2L - chr2L_6062436_6062641 chr2L_6062436_6062583 chr2L_6062336_6062435;chr2L_6062642_6062683 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.47 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8668 chr2L + chr2L_8131913_8131972 chr2L_8131912_8131913;chr2L_8131972_8131973 chr2L_8131287_8131912;chr2L_8131973_8132194 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 1.30 0.00 0.00 0.00 5.06 4.17 0.00 2.33 0.43 0.00 0.00 0.00 0.00 1.54 0.00 1.08 6.82 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.44 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA mmd chrX - chrX_15843011_15843552 chrX_15843028_15843552 chrX_15843553_15843849;chrX_15842400_15843010 62.50 61.29 NA NA 64.00 74.07 62.50 71.05 70.13 NA NA NA 73.91 62.50 53.85 NA NA 47.83 65.00 58.46 NA NA NA 54.17 NA NA NA NA NA NA 51.85 NA NA 41.03 NA NA 62.50 NA 59.38 NA NA 57.14 NA NA NA NA 58.33 NA 54.00 NA 66.67 NA NA NA 62.96 NA 74.42 NA K intron_retention zip,I_chr2R_20878796_20879147 chr2R - chr2R_20878796_20879332 chr2R_20878795_20878796;chr2R_20879332_20879333 chr2R_20878696_20878795;chr2R_20879333_20879496 0.38 0.54 0.24 0.00 0.00 0.49 1.40 0.58 0.63 0.00 0.71 1.40 1.29 0.53 0.00 1.13 0.00 0.55 0.00 0.56 0.87 1.47 0.92 0.23 0.36 0.00 0.78 0.38 0.44 1.33 0.41 0.00 0.36 0.87 0.00 0.00 0.25 0.00 0.00 0.76 0.37 0.22 0.50 0.32 0.34 0.92 0.47 0.78 0.49 0.58 0.00 0.00 0.31 0.00 0.00 0.24 0.63 0.00 K intron_retention noncoding_18164,F_chr3R_17192061_17200781,RI_chr3R_17192484_17193084 chr3R + chr3R_17192932_17193084 chr3R_17192931_17192932;chr3R_17193084_17193085 chr3R_17192696_17192931;chr3R_17193085_17193184 0.00 0.00 NA 3.45 0.00 NA 3.85 0.00 3.23 NA NA 5.56 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 3.23 NA NA 0.00 5.26 5.00 4.35 1.64 11.11 0.00 5.26 NA NA 0.00 0.00 0.00 4.35 0.00 3.45 NA 0.00 0.00 3.23 0.00 8.33 8.00 0.00 3.45 NA NA 0.00 0.00 13.33 0.00 10.53 K jcn_only_AA CG6860,RFI_chr2L_17371821_17372564 chr2L - chr2L_17368389_17372564 chr2L_17371821_17372564 chr2L_17372565_17372642;chr2L_17368289_17368388 21.64 17.61 23.78 23.33 21.13 11.27 20.00 18.29 24.40 24.11 22.95 20.35 20.37 21.60 23.78 28.67 17.48 27.54 18.32 23.51 26.50 15.17 23.27 25.36 20.91 12.10 21.64 22.22 28.15 28.92 22.40 10.48 28.09 20.97 22.29 19.55 27.02 21.79 22.44 25.41 15.93 24.60 20.00 32.98 12.50 14.44 23.15 25.12 20.00 19.62 27.87 22.64 18.92 20.63 19.71 14.45 15.79 15.32 K intron_retention CG32103,I_chr3L_12398261_12403200 chr3L - chr3L_12398037_12398101 chr3L_12398036_12398037;chr3L_12398101_12398102 chr3L_12397463_12398036;chr3L_12398102_12398260 1.14 0.00 1.94 2.56 1.14 0.00 0.00 3.25 0.54 0.00 0.00 2.41 0.00 0.00 0.00 0.00 1.37 0.00 2.41 0.99 0.00 1.44 2.53 1.68 1.19 2.06 6.84 7.61 2.56 0.83 1.00 0.00 0.83 1.71 4.49 2.50 1.14 2.06 1.82 0.57 1.59 1.05 1.35 0.00 0.00 0.00 0.00 3.80 2.40 0.00 1.29 0.00 4.94 1.47 0.00 0.00 1.67 0.99 K intron_retention Nhe1,I_chr2L_105456_106437,CRE_chr2L_105910_105964,F_chr2L_105910_105968,I_chr2L_105916_106437 chr2L - chr2L_105916_105968 chr2L_105915_105916;chr2L_105968_105969 chr2L_105816_105915;chr2L_105969_106064 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 6.06 6.25 0.00 NA NA NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K intron_retention aux chr3R + chr3R_47040_47477 chr3R_47039_47040;chr3R_47477_47478 chr3R_46840_47039;chr3R_47478_47708 0.53 2.78 2.00 2.50 3.28 0.00 2.17 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.92 1.27 3.12 2.26 1.83 3.12 0.00 5.32 3.75 0.53 0.77 2.22 0.00 0.00 0.84 0.00 4.85 1.52 0.00 0.00 1.22 0.00 2.92 2.08 3.54 0.00 0.00 0.00 0.71 0.58 1.96 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 K intron_retention CG12054 chr3R + chr3R_27051184_27051534 chr3R_27051183_27051184;chr3R_27051534_27051535 chr3R_27050956_27051183;chr3R_27051535_27051798 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention SmG chrX - chrX_16534064_16534125 chrX_16534063_16534064;chrX_16534125_16534126 chrX_16533995_16534063;chrX_16534126_16534194 0.77 1.20 0.54 0.76 2.48 1.25 2.71 0.64 1.20 0.35 3.31 1.03 0.00 0.00 1.21 0.48 0.00 0.00 0.84 0.66 0.00 3.09 0.55 0.60 5.19 4.81 1.50 4.90 13.40 0.84 1.05 0.30 0.69 0.59 1.53 1.16 0.90 0.00 1.20 0.59 5.93 0.74 0.85 0.47 0.58 0.63 0.00 0.87 0.77 0.69 1.13 1.16 1.04 0.33 0.95 0.47 0.29 0.67 K jcn_only_AA l(1)G0196,I_chrX_21900456_21904601 chrX + chrX_21898150_21898203;chrX_21898150_21898212 chrX_21898150_21898215 chrX_21897878_21898149;chrX_21898216_21898384 15.64 17.81 11.84 17.78 16.67 9.86 23.08 8.91 15.97 19.51 14.29 13.60 25.00 19.72 21.78 15.12 11.43 19.35 22.97 18.45 13.21 7.69 8.05 11.86 17.50 9.84 12.12 16.67 4.35 20.00 14.41 NA 26.09 10.71 11.54 16.67 18.09 13.33 12.68 17.74 10.00 13.75 11.67 18.18 16.67 23.21 15.91 33.33 14.00 16.00 15.38 19.23 3.23 16.13 14.14 14.63 15.22 20.00 K cassette Ephrin,I_chr4_595055_597604,RI_chr4_596272_596341 chr4 + chr4_595055_596327 chr4_595055_595960;chr4_596272_596327 chr4_595961_596271 chr4_594955_595054;chr4_596328_596921 100.00 100.00 97.44 94.74 96.43 100.00 98.99 98.98 100.00 100.00 100.00 98.82 100.00 97.96 100.00 98.90 100.00 97.37 96.49 100.00 96.77 96.55 97.67 100.00 100.00 76.67 100.00 95.24 92.31 100.00 97.96 100.00 100.00 98.97 100.00 86.67 96.15 100.00 100.00 97.92 100.00 98.81 97.56 97.67 100.00 100.00 100.00 100.00 99.05 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor I_chrX_5796578_5796722,CG4020,CG3726 chrX + chrX_5835305_5835381 chrX_5835305_5835358 chrX_5835198_5835304;chrX_5835382_5835509 7.50 NA NA 19.23 NA NA NA NA NA NA NA 18.18 NA NA NA NA NA 10.53 NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA 6.67 NA NA 6.67 0.00 NA NA NA NA NA 12.50 NA NA 0.00 NA NA 13.33 6.67 NA NA NA NA 8.33 NA NA N alternative_donor CG8229,CG33199 chr2R - chr2R_4836447_4836515;chr2R_4836447_4837350 chr2R_4836447_4838210 chr2R_4835619_4836446;chr2R_4838211_4838296 35.29 39.05 43.22 34.89 40.27 45.13 19.93 39.79 33.25 42.14 20.35 36.25 38.76 34.66 35.22 29.31 40.00 25.25 34.34 34.52 26.06 19.49 39.08 39.33 38.56 33.52 29.07 31.58 15.71 37.23 30.33 35.29 27.68 41.81 40.59 26.06 36.73 40.78 41.64 40.35 13.37 36.48 37.41 38.99 40.53 38.29 32.04 28.00 43.12 32.51 35.23 41.03 33.00 40.64 34.85 42.45 21.73 29.52 K multi_cassette LpR2 chr3R - chr3R_21527384_21539563 chr3R_21527384_21532008;chr3R_21532208_21532537;chr3R_21533936_21535012;chr3R_21535240_21539258;chr3R_21539379_21539563 chr3R_21532009_21532207;chr3R_21532538_21533935;chr3R_21535013_21535239;chr3R_21539259_21539378 chr3R_21527372_21527383;chr3R_21539564_21539578 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA 100.00 100.00 NA NA NA 100.00 100.00 NA NA NA NA NA NA NA 100.00 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA K alternative_donor Cip4,I_chr3L_4363128_4363769,I_chr3L_4363386_4363987 chr3L - chr3L_4324448_4324921 chr3L_4324448_4324861 chr3L_4324284_4324447;chr3L_4324922_4324996 37.31 32.32 32.23 28.48 46.38 34.04 43.98 31.18 37.19 71.43 39.13 29.79 52.46 37.63 35.58 31.47 38.27 68.93 43.33 31.73 39.68 31.43 37.76 40.00 32.04 32.81 49.45 50.00 51.02 43.75 41.18 36.36 32.32 32.17 34.92 29.91 38.98 36.26 30.37 20.49 40.74 37.31 36.99 37.65 37.65 42.50 40.85 48.96 35.10 39.62 36.97 38.24 35.62 31.48 35.34 30.38 41.94 55.91 K intron_retention CG8060,CG30096,I_chr2R_12220926_12223455 chr2R - chr2R_12206802_12206854 chr2R_12206801_12206802;chr2R_12206854_12206855 chr2R_12206658_12206801;chr2R_12206855_12206982 12.50 NA NA 14.29 NA NA 12.50 25.00 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG6891,RI_chrX_18670889_18674713,I_chrX_18673576_18674713,RI_chrX_18674227_18674713 chrX + chrX_18669663_18674713 chrX_18669662_18669663;chrX_18674713_18674714 chrX_18669258_18669662;chrX_18674714_18674813 0.83 0.57 0.46 1.29 0.76 0.98 0.80 0.88 0.81 0.20 0.83 0.80 0.72 1.30 0.84 1.24 1.07 4.94 0.52 0.42 0.38 1.25 1.19 0.83 0.94 1.23 1.26 2.58 2.29 0.94 0.71 0.57 1.50 0.81 1.57 0.80 0.86 0.84 0.63 0.50 0.67 0.90 0.38 0.83 0.48 0.65 0.73 1.20 0.70 0.85 0.86 1.03 0.70 0.79 1.07 0.63 0.79 0.62 K intron_retention gro chr3R + chr3R_21870349_21871196 chr3R_21870348_21870349;chr3R_21871196_21871197 chr3R_21870166_21870348;chr3R_21871197_21871385 8.52 0.00 14.29 10.00 NA NA 21.43 13.33 19.23 NA 0.00 8.70 NA NA 0.00 NA NA NA 0.00 5.00 NA 14.81 7.69 10.00 12.50 NA 9.52 14.29 NA 22.22 NA 0.00 6.67 5.00 0.00 25.00 20.00 0.00 6.06 6.25 10.53 6.45 NA 20.00 8.33 NA NA 4.55 9.09 NA 0.00 NA 0.00 NA NA 13.33 10.53 0.00 K alternative_donor CG8188,I_chrX_17595810_17596592 chrX - chrX_17594911_17595002 chrX_17594911_17594995 chrX_17593833_17594910;chrX_17595003_17595198 97.30 97.44 97.67 100.00 96.55 96.55 93.22 91.46 94.59 97.50 93.94 98.68 94.44 97.30 97.96 98.70 96.55 92.16 96.23 98.75 100.00 95.45 98.31 100.00 97.22 98.28 97.37 96.43 97.67 92.19 98.65 98.73 98.80 96.51 97.73 100.00 82.61 96.43 98.08 96.70 97.53 94.37 86.67 97.30 97.53 96.99 98.68 98.21 96.59 97.30 96.00 89.66 100.00 98.28 94.64 96.08 93.75 97.71 K jcn_only_AD eIF-5A,I_chr2R_19945430_19946454,I_chr2R_19945576_19946006,I_chr2R_19945723_19946006,I_chr2R_19945783_19946006,I_chr2R_19945852_19946006,I_chr2R_19945875_19946006,I_chr2R_19945921_19946006,I_chr2R_19946299_19946454,I_chr2R_19946657_19946733,I_chr2R_19948517_19948682 chr2R + chr2R_19945576_19946006;chr2R_19945921_19946006;chr2R_19945426_19946006;chr2R_19945875_19946006 chr2R_19945430_19946006 chr2R_19946007_19946106;chr2R_19945343_19945425 96.29 96.06 96.21 95.58 96.66 96.56 96.83 96.06 96.96 95.88 97.42 96.23 96.73 96.30 96.27 97.08 96.82 96.29 96.45 96.11 96.17 93.89 96.83 97.40 96.81 95.60 95.32 95.81 93.91 93.27 96.05 95.50 93.81 96.37 95.49 94.83 96.97 97.34 96.72 96.81 95.36 96.64 96.57 97.08 95.75 96.04 96.38 95.33 96.58 96.56 95.46 97.53 95.93 95.84 96.66 96.80 96.86 94.90 K jcn_only_AD Reg-5,I_chr2R_20676374_20676658,RI_chr2R_20676692_20676888 chr2R - chr2R_20676374_20676658 chr2R_20676374_20676501 chr2R_20676274_20676373;chr2R_20676659_20676691 98.63 99.13 100.00 99.02 98.63 98.85 100.00 100.00 100.00 96.55 98.18 100.00 98.39 100.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 91.40 98.43 95.77 99.05 100.00 100.00 96.77 95.65 97.47 99.00 100.00 96.55 98.45 95.77 95.88 98.42 97.60 98.84 98.32 96.36 99.38 96.92 98.98 97.50 96.26 98.19 91.89 98.66 97.50 98.40 98.59 99.07 99.17 98.96 99.16 98.53 97.06 K intron_retention CG7453,I_chrX_19074505_19075656 chrX + chrX_19074505_19074561 chrX_19074504_19074505;chrX_19074561_19074562 chrX_19074405_19074504;chrX_19074562_19074981 90.16 91.49 93.33 93.03 87.31 90.83 90.80 86.90 91.05 94.29 90.16 86.89 87.00 92.78 89.71 94.00 93.00 88.71 86.40 91.75 91.35 94.86 95.68 91.67 90.70 89.92 92.62 97.20 88.78 84.07 89.15 86.81 93.52 89.80 89.58 93.75 92.52 90.91 89.92 87.98 90.62 90.25 86.54 87.72 84.62 86.90 87.18 93.02 90.95 88.54 87.68 91.35 83.65 86.81 91.03 87.22 89.83 89.40 K alternative_donor CG6043,I_chr2L_13267973_13268086 chr2L + chr2L_13271628_13272233 chr2L_13271973_13272233 chr2L_13272234_13272242;chr2L_13271624_13271627 80.00 83.33 NA NA NA NA NA NA 81.82 71.43 NA 87.50 NA NA 100.00 100.00 NA NA 100.00 80.00 NA 83.33 71.43 45.45 100.00 NA 66.67 66.67 100.00 100.00 80.00 NA 87.50 80.00 71.43 88.89 56.25 75.00 66.67 66.67 75.00 55.56 NA 77.78 85.71 100.00 85.71 75.00 66.67 71.43 85.71 NA 85.71 62.50 NA 83.33 87.50 80.00 K intron_retention CG7655,CG31360 chr3R + chr3R_13508838_13508896 chr3R_13508837_13508838;chr3R_13508896_13508897 chr3R_13508407_13508837;chr3R_13508897_13509483 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Karl,I_chrX_11687161_11687475,I_chrX_11689220_11690898 chrX + chrX_11685029_11685093 chrX_11685028_11685029;chrX_11685093_11685094 chrX_11684961_11685028;chrX_11685094_11685176 0.67 0.69 0.95 0.72 0.46 0.37 0.61 0.46 0.59 0.83 0.67 0.67 0.66 0.94 0.74 0.63 0.70 0.50 0.60 0.77 0.91 0.49 0.36 0.32 0.18 0.70 0.83 0.44 1.42 0.55 0.91 1.18 0.30 0.73 1.07 0.95 0.52 0.50 0.51 0.47 0.64 0.64 1.24 0.47 0.91 0.85 0.68 0.73 0.93 0.85 1.10 0.78 0.42 0.66 0.60 0.42 0.64 0.91 K intron_retention alph,I_chr3R_25417890_25422962 chr3R + chr3R_25423631_25423885 chr3R_25423630_25423631;chr3R_25423885_25423886 chr3R_25423562_25423630;chr3R_25423886_25424323 1.28 0.00 0.00 1.71 0.00 0.00 3.70 3.14 1.43 0.00 0.00 3.80 0.00 2.20 1.30 2.17 2.44 0.00 0.77 1.00 0.00 6.38 1.83 1.41 0.00 2.90 4.17 4.41 6.25 0.00 0.79 1.64 1.09 2.08 0.00 3.64 0.00 0.00 0.00 2.96 2.15 2.96 0.00 0.00 0.00 4.40 0.00 1.28 1.59 0.91 0.00 0.00 1.89 0.00 1.98 1.37 1.89 0.00 K multi_cassette unk,I_chr3R_18980963_18981530 chr3R - chr3R_18980693_18981530 chr3R_18980693_18980853;chr3R_18980963_18981161;chr3R_18981272_18981530 chr3R_18980854_18980962;chr3R_18981162_18981271 chr3R_18980567_18980692;chr3R_18981531_18981630 100.00 NA NA NA NA NA NA 85.71 100.00 NA NA 100.00 83.33 NA NA 83.33 NA NA 100.00 90.00 NA 100.00 NA NA NA NA NA 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA 75.00 NA 100.00 NA 100.00 NA NA NA NA NA 100.00 75.00 NA NA NA NA NA 100.00 NA NA NA K intron_retention CG17665 chr2R - chr2R_126662_129593 chr2R_126661_126662;chr2R_129593_129594 chr2R_126199_126661;chr2R_129594_129936 1.73 NA 6.25 7.69 0.00 NA 6.06 4.65 10.87 NA NA 4.44 0.00 0.00 0.00 4.00 3.45 12.50 5.71 5.71 0.00 NA NA NA NA 0.00 26.67 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K intron_retention Rab5,I_chr2L_2361586_2364444,RI_chr2L_2361586_2364627,I_chr2L_2361586_2364794 chr2L - chr2L_2361586_2364594 chr2L_2361585_2361586;chr2L_2364594_2364595 chr2L_2361486_2361585;chr2L_2364595_2364595 7.28 NA 11.76 13.79 7.69 7.14 8.89 17.24 7.14 NA NA 7.41 9.52 NA 0.00 7.69 0.00 8.33 9.52 2.44 0.00 28.57 12.50 NA NA 9.09 15.38 NA 11.11 11.11 8.00 NA 0.00 10.71 20.00 0.00 NA NA 0.00 14.29 0.00 5.71 5.56 0.00 0.00 2.94 0.00 8.00 6.25 NA 0.00 NA NA 0.00 8.00 5.88 0.00 4.55 K intron_retention bor chr3R - chr3R_12088809_12088868 chr3R_12088808_12088809;chr3R_12088868_12088869 chr3R_12087984_12088808;chr3R_12088869_12089343 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Pegarn chr3L + chr3L_12788186_12788262 chr3L_12788189_12788262 chr3L_12788263_12788330;chr3L_12788120_12788185 92.59 94.74 93.75 94.12 87.50 87.50 91.67 93.33 96.43 87.50 92.31 84.00 NA 91.67 92.31 88.89 NA 100.00 91.67 94.12 100.00 96.15 96.15 91.30 84.62 100.00 89.47 94.12 90.91 91.67 90.00 NA 91.67 94.12 86.67 100.00 92.59 94.44 92.50 79.17 88.89 81.08 100.00 94.12 95.65 95.00 95.24 93.75 93.33 92.59 94.44 94.12 86.36 85.71 95.24 100.00 84.62 77.78 K intron_retention kek1 chr2L - chr2L_12818996_12819258 chr2L_12818995_12818996;chr2L_12819258_12819259 chr2L_12818930_12818995;chr2L_12819259_12822787 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.25 100.00 100.00 98.95 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9785143,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9770053_9781634 chr2R_9770052_9770053;chr2R_9781634_9781635 chr2R_9769906_9770052;chr2R_9781635_9782097 70.30 72.00 78.95 67.31 72.73 65.00 87.10 61.40 72.97 58.82 61.11 82.35 69.23 87.50 70.00 75.68 86.36 85.00 63.33 60.78 60.00 68.75 63.33 70.59 61.54 83.33 70.83 90.48 63.89 84.85 57.58 NA 64.15 82.14 71.43 71.79 63.33 NA 55.56 74.47 NA 64.15 72.00 70.97 NA 70.00 NA 79.17 83.72 NA 64.29 60.00 100.00 NA 66.67 NA NA 63.64 K multi_cassette bip2,RI_chr4_481674_482028,RI_chr4_481674_487126,RI_chr4_482358_482702,RI_chr4_483128_487126,RI_chr4_483144_483680,RI_chr4_486609_487126 chr4 - chr4_481674_487126 chr4_481674_482130;chr4_482955_483013;chr4_483128_483680;chr4_485355_485422;chr4_485855_487126 chr4_482131_482954;chr4_483014_483127;chr4_483681_485354;chr4_485423_485854 chr4_481574_481673;chr4_487127_487226 100.00 87.50 100.00 92.31 83.33 100.00 100.00 100.00 96.00 100.00 100.00 88.89 100.00 100.00 90.91 86.96 90.91 80.00 92.86 88.24 100.00 100.00 100.00 87.50 100.00 100.00 87.50 100.00 80.00 100.00 75.00 100.00 80.00 95.65 100.00 100.00 100.00 100.00 100.00 83.33 80.00 100.00 90.91 100.00 100.00 100.00 85.71 100.00 100.00 100.00 91.67 83.33 80.00 100.00 100.00 100.00 75.00 100.00 K alternative_acceptor Arc-p34 chr2L + chr2L_20420413_20420494 chr2L_20420413_20420489 chr2L_20420319_20420412;chr2L_20420495_20420589 99.66 99.34 100.00 99.66 99.11 99.31 100.00 99.67 100.00 98.73 100.00 100.00 99.21 99.32 99.46 100.00 100.00 100.00 100.00 99.75 100.00 99.20 99.59 99.01 100.00 99.43 99.52 99.22 100.00 99.14 99.07 99.16 99.17 100.00 100.00 99.29 100.00 100.00 99.38 99.61 99.15 100.00 99.26 99.33 100.00 99.46 100.00 99.26 99.72 100.00 100.00 99.25 100.00 100.00 100.00 99.48 99.66 99.55 K intron_retention tud,I_chr2R_17086183_17086333 chr2R + chr2R_17074553_17074607 chr2R_17074552_17074553;chr2R_17074607_17074608 chr2R_17073474_17074552;chr2R_17074608_17075437 0.00 0.00 0.00 0.89 0.00 0.00 1.43 1.51 1.27 2.56 0.00 1.62 0.00 0.00 2.72 2.45 2.94 0.00 0.00 2.90 0.00 0.98 3.95 0.00 0.00 0.00 5.56 16.00 0.00 1.28 1.60 0.00 1.45 1.99 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.93 1.94 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 K intron_retention CG10638 chr3L - chr3L_12494143_12494264 chr3L_12494142_12494143;chr3L_12494264_12494265 chr3L_12493975_12494142;chr3L_12494265_12494405 21.43 NA NA NA NA NA 46.15 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 28.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 14.29 NA NA NA NA NA NA NA K intron_retention CG32676 chrX - chrX_10609173_10609232 chrX_10609172_10609173;chrX_10609232_10609233 chrX_10605951_10609172;chrX_10609233_10611425 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor sqh,I_chrX_6118043_6119039,I_chrX_6118150_6118725,I_chrX_6118150_6118729,I_chrX_6118150_6118790,I_chrX_6118150_6118800 chrX - chrX_6118150_6118729;chrX_6118150_6118725;chrX_6118150_6119039;chrX_6118150_6118949 chrX_6118150_6119035 chrX_6118050_6118149;chrX_6119040_6119139 0.60 0.62 0.83 0.20 0.29 0.28 0.39 0.21 0.60 0.00 0.29 0.55 0.60 0.31 8.60 0.43 0.66 0.32 0.25 0.44 0.62 0.53 0.85 0.23 0.00 0.25 0.43 0.74 1.40 1.03 0.62 1.00 0.82 0.52 0.86 0.00 0.82 0.79 0.39 0.68 0.45 0.55 0.96 0.97 0.83 0.55 0.24 1.21 0.71 0.53 0.63 0.32 0.73 0.68 0.68 0.45 1.03 0.73 K alternative_donor exd chrX + chrX_15887147_15887504;chrX_15886884_15887504;chrX_15886888_15887504;chrX_15886827_15887504;chrX_15886958_15887504;chrX_15886802_15887504;chrX_15887006_15887504 chrX_15886821_15887504 chrX_15887505_15887806;chrX_15886739_15886801 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention Mlf,noncoding_7111,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CEI_chr2R_11826763_11827279 chr2R - chr2R_11824086_11825183 chr2R_11824085_11824086;chr2R_11825183_11825184 chr2R_11823989_11824085;chr2R_11825184_11825384 18.42 18.42 12.50 43.59 9.52 6.67 19.51 15.58 20.31 16.13 14.29 22.32 29.03 29.73 26.53 29.17 31.25 26.67 18.18 16.67 16.67 14.60 21.15 15.31 23.26 10.81 14.12 41.67 28.85 21.54 25.81 26.56 19.54 17.33 17.39 22.45 15.04 16.67 21.09 23.01 28.57 15.08 15.15 34.00 15.49 21.74 17.65 25.42 15.93 11.00 18.42 19.51 13.51 17.39 24.00 14.93 12.12 13.16 K alternative_acceptor CG6340,I_chrX_15402291_15403750 chrX + chrX_15376571_15377231 chrX_15376571_15377214 chrX_15376446_15376570;chrX_15377232_15377453 7.69 13.64 7.69 14.29 NA NA 0.00 14.29 6.67 NA NA 18.18 NA 16.67 5.00 13.04 12.50 22.22 NA 13.51 NA 5.00 22.22 7.69 NA NA 7.69 NA 14.29 5.56 13.33 7.14 5.71 8.33 7.69 NA 6.67 6.67 10.53 17.86 40.00 6.45 NA 4.76 6.67 5.88 6.67 8.33 11.76 NA 14.29 NA NA NA 4.76 NA NA 6.45 N jcn_only_AA stc chr2L + chr2L_15114214_15114448;chr2L_15114214_15114299 chr2L_15114214_15114311 chr2L_15114049_15114213;chr2L_15114449_15115753 3.00 2.86 4.17 2.40 3.23 3.08 5.05 3.00 3.65 2.94 1.89 2.48 3.33 4.05 8.11 1.79 0.00 3.23 1.85 2.87 5.56 2.26 4.92 1.98 1.12 4.17 1.67 3.88 3.20 3.05 5.43 2.29 2.30 3.81 4.12 2.38 2.02 1.96 0.87 2.98 3.77 5.19 1.69 3.23 2.44 5.24 2.17 2.87 4.14 3.51 2.07 8.62 0.00 2.82 6.90 1.43 9.52 3.13 K cassette CG11266,RI_chr2L_7033019_7034180,RI_chr2L_7033019_7034764,I_chr2L_7034274_7034764,I_chr2L_7034274_7035406,I_chr2L_7051093_7051366 chr2L + chr2L_7033019_7034764;chr2L_7033019_7034483;chr2L_7033019_7035406 chr2L_7033019_7034198;chr2L_7034274_7034764,chr2L_7034274_7034483,chr2L_7034274_7035406 chr2L_7034199_7034273 chr2L_7032919_7033018;chr2L_7035407_7035506 12.02 11.11 6.90 4.55 10.71 18.18 5.41 20.45 11.84 13.21 13.64 9.59 28.57 17.65 12.50 20.00 24.00 9.68 14.29 11.25 13.64 2.63 13.04 13.21 4.17 2.94 7.32 9.09 9.09 14.29 26.19 17.24 8.20 21.43 7.14 NA 5.36 8.33 8.33 13.56 9.47 8.89 15.00 16.00 6.48 20.79 8.51 20.25 20.31 12.20 12.20 15.38 4.26 11.43 25.00 10.87 5.41 16.97 K alternative_donor achi,I_chr2R_8401767_8401934 chr2R - chr2R_8401767_8401848;chr2R_8401767_8401934 chr2R_8401767_8402280 chr2R_8401667_8401766;chr2R_8402281_8402519 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 95.65 NA NA 100.00 NA NA 100.00 96.43 100.00 NA 93.33 100.00 100.00 NA 100.00 100.00 93.33 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 94.44 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention mura,RI_chr3R_5373093_5377292,I_chr3R_5375533_5376618,RI_chr3R_5380786_5380850 chr3R - chr3R_5368647_5372519 chr3R_5368646_5368647;chr3R_5372519_5372520 chr3R_5368625_5368646;chr3R_5372520_5372875 6.90 NA NA 6.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.14 NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA N alternative_acceptor CG1115,F_chr3R_1052705_1053045 chr3R + chr3R_1052701_1053094 chr3R_1052701_1053045 chr3R_1052605_1052700;chr3R_1053095_1053145 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 82.69 100.00 100.00 100.00 100.00 76.92 100.00 100.00 100.00 100.00 K cassette CG8788,I_chr2R_5026774_5026825,RI_chr2R_5026774_5026866,RI_chr2R_5026774_5028942,RI_chr2R_5033951_5034150,I_chr2R_5036518_5036570 chr2R + chr2R_5026076_5027484 chr2R_5026076_5026598;chr2R_5026774_5027484 chr2R_5026599_5026773 chr2R_5026036_5026075;chr2R_5027485_5027803 100.00 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG1161,RI_chr3R_1181273_1181459 chr3R + chr3R_1181273_1181555;chr3R_1181273_1181459 chr3R_1181273_1181515 chr3R_1181173_1181272;chr3R_1181556_1181559 0.00 0.00 0.00 0.93 0.00 0.00 1.74 0.00 0.28 0.00 0.00 0.35 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.97 0.00 0.00 1.14 2.04 0.00 0.63 1.90 0.79 0.00 0.00 0.00 0.54 0.00 0.81 0.66 0.00 0.36 1.10 0.00 0.34 1.23 0.00 1.52 0.57 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 K jcn_only_AD Trf2,I_chrX_8318346_8318408 chrX + chrX_8317609_8317760 chrX_8317703_8317760 chrX_8317761_8318068;chrX_8317217_8317608 100.00 NA NA NA NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG30035 chr2R + chr2R_7560348_7560549 chr2R_7560347_7560348;chr2R_7560549_7560550 chr2R_7560222_7560347;chr2R_7560550_7561335 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.17 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA K mutually_exclusive dco,RI_chr3R_26883647_26884261,I_chr3R_26883651_26883729,RI_chr3R_26883651_26886096,I_chr3R_26884350_26884670,I_chr3R_26884350_26886671,I_chr3R_26884350_26886791,RI_chr3R_26884365_26886096,I_chr3R_26884365_26886798 chr3R - chr3R_26883651_26886096,chr3R_26886187_26886798 chr3R_26883651_26884261,chr3R_26884350_26886798 chr3R_26886097_26886186 chr3R_26884262_26884349 chr3R_26883551_26883650;chr3R_26886799_26886891 88.89 92.86 90.00 76.27 88.89 82.35 73.47 91.18 81.03 86.67 89.47 96.00 62.22 90.00 89.47 81.25 78.95 80.00 84.38 62.50 100.00 67.74 89.19 100.00 89.47 65.22 86.67 94.29 40.00 88.89 92.59 92.86 78.38 85.71 91.30 90.91 82.93 88.89 93.10 89.47 85.00 83.78 81.82 91.30 78.26 95.00 95.35 78.79 86.96 91.67 94.59 80.00 75.00 96.55 92.86 88.46 93.10 72.41 K alternative_donor Ssadh,RI_chr3R_21451890_21451963,I_chr3R_21452371_21452464,I_chr3R_21452407_21452453 chr3R - chr3R_21452371_21452464 chr3R_21452371_21452453 chr3R_21452307_21452370;chr3R_21452465_21452553 77.78 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 77.78 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N intron_retention CG32138 chr3L + chr3L_14058259_14059498 chr3L_14058258_14058259;chr3L_14059498_14059499 chr3L_14058172_14058258;chr3L_14059499_14060368 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.48 97.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 79.13 100.00 100.00 100.00 100.00 94.03 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 96.64 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.84 93.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_150069_150307;chr4_150069_150180;chr4_150069_150378;chr4_150069_150353;chr4_150069_150295 chr4_150069_150205 chr4_149969_150068;chr4_150379_150379 0.00 NA 0.00 0.00 0.00 0.00 5.00 0.00 6.25 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K alternative_donor osa,I_chr3R_13542657_13542834,I_chr3R_13542657_13543500,I_chr3R_13542657_13543662,I_chr3R_13542657_13543668 chr3R - chr3R_13542657_13543968;chr3R_13542657_13543500;chr3R_13542657_13543662;chr3R_13542657_13543668;chr3R_13542657_13543677 chr3R_13542657_13542834 chr3R_13542557_13542656;chr3R_13543969_13544017 1.32 1.69 1.72 0.93 1.96 1.61 1.01 0.91 1.32 0.00 0.00 1.52 1.43 1.45 1.47 0.99 1.39 0.00 1.28 0.70 1.69 5.56 0.88 1.39 1.89 1.75 1.23 2.13 4.08 1.14 1.69 0.00 2.17 0.81 1.89 1.32 1.10 0.00 2.60 0.76 4.17 1.63 1.67 1.35 0.00 0.00 3.33 2.20 0.70 0.00 1.06 0.00 0.00 0.00 1.23 0.00 0.00 2.63 K alternative_donor Pk61C,CE_chr3L_129889_141769,I_chr3L_132531_133824,I_chr3L_133962_134014 chr3L + chr3L_132056_135457;chr3L_132531_135457;chr3L_131959_135457 chr3L_131934_135457 chr3L_135458_135842;chr3L_131849_131933 0.00 6.25 0.00 0.00 10.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 3.85 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 11.11 0.00 0.00 0.00 0.00 0.00 0.00 11.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.29 0.00 0.00 0.00 0.00 7.14 10.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention klar,I_chr3L_462559_472609,RI_chr3L_517594_539898 chr3L - chr3L_436160_436221 chr3L_436159_436160;chr3L_436221_436222 chr3L_434304_436159;chr3L_436222_436604 0.00 0.00 1.28 1.49 0.83 0.00 0.00 0.37 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.95 5.71 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.37 0.00 0.00 0.00 0.94 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention G-salpha60A chr2R + chr2R_19833348_19833420 chr2R_19833347_19833348;chr2R_19833420_19833421 chr2R_19833219_19833347;chr2R_19833421_19833600 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.57 0.00 0.00 0.00 0.00 0.00 0.00 4.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 K alternative_donor Actn,I_chrX_1922061_1924247,I_chrX_1922784_1923807,I_chrX_1922784_1923873 chrX - chrX_1922784_1923873 chrX_1922784_1923807 chrX_1922698_1922783;chrX_1923874_1923907 84.52 NA NA NA NA NA 77.78 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 83.33 87.50 NA NA NA NA NA 80.00 NA 85.71 NA NA NA NA NA 85.71 NA NA 62.50 NA 85.71 NA 77.78 100.00 NA NA 87.50 81.82 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG31365,RI_chr3R_18950918_18950979 chr3R - chr3R_18950918_18950983 chr3R_18950918_18950979 chr3R_18950818_18950917;chr3R_18950984_18951079 6.25 0.00 NA 0.00 NA 4.35 3.03 7.69 2.13 NA NA 6.06 NA NA 0.00 9.38 0.00 10.00 NA 6.25 4.76 19.23 4.55 4.17 15.00 10.00 11.11 NA NA NA 16.13 NA 22.73 6.45 NA 10.34 0.00 NA NA 3.33 3.57 12.20 NA NA NA 3.45 14.71 9.52 2.78 11.76 6.45 9.38 NA 0.00 7.69 5.41 7.41 5.00 K intron_retention RpL27A,E_chr2L_4457411_4457977,I_chr2L_4458058_4458120 chr2L - chr2L_4457290_4457374 chr2L_4457289_4457290;chr2L_4457374_4457375 chr2L_4457180_4457289;chr2L_4457375_4457410 0.99 1.07 0.95 1.06 0.64 1.02 1.85 0.74 0.73 1.82 1.51 0.84 0.91 0.64 0.53 0.78 0.42 0.79 0.81 1.48 0.99 1.56 1.64 0.83 2.47 2.37 1.48 1.83 28.28 1.94 0.88 1.77 0.80 1.02 1.62 7.10 0.85 1.16 0.94 0.94 3.62 0.66 0.76 0.76 0.96 1.78 0.67 2.03 0.99 1.31 1.71 0.72 1.45 2.17 0.71 0.74 0.80 1.54 K jcn_only_AD E(z),RI_chr3L_10629194_10629525,RI_chr3L_10629541_10629723 chr3L - chr3L_10629194_10629723 chr3L_10629194_10629525 chr3L_10629096_10629193;chr3L_10629724_10629823 0.83 0.00 3.28 1.61 0.00 1.39 1.33 1.19 1.60 0.00 0.00 1.65 1.47 1.89 0.00 1.20 2.13 3.70 0.00 0.63 0.00 0.00 1.88 0.83 1.64 0.00 2.02 1.61 0.00 1.47 2.00 0.00 1.69 2.17 1.59 0.00 0.00 0.00 0.80 0.00 1.69 0.79 1.79 0.00 7.55 0.00 0.88 0.00 2.07 0.87 0.71 0.00 0.00 0.00 0.00 0.00 2.42 0.00 K intron_retention CG30051 chr2R + chr2R_8323944_8324018 chr2R_8323943_8323944;chr2R_8324018_8324019 chr2R_8323879_8323943;chr2R_8324019_8324082 4.17 4.17 0.00 0.00 4.76 0.00 35.48 4.88 2.17 5.56 9.09 0.00 10.53 4.55 4.76 2.27 0.00 0.00 0.00 9.09 NA NA 3.12 0.00 7.69 18.52 11.43 13.04 0.00 4.76 3.85 0.00 0.00 9.09 0.00 NA 5.71 13.64 13.04 0.00 25.00 4.55 0.00 7.69 0.00 0.00 0.00 0.00 4.17 5.56 16.67 0.00 0.00 4.17 6.67 0.00 8.00 3.23 K jcn_only_AD nimB1 chr2L + chr2L_13964732_13964796 chr2L_13964739_13964796 chr2L_13964797_13964865;chr2L_13964670_13964731 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 97.78 96.67 97.30 97.92 100.00 98.63 95.00 NA 96.00 97.44 100.00 96.15 100.00 NA NA 100.00 99.15 95.65 100.00 100.00 NA NA 100.00 92.59 100.00 97.78 95.12 96.55 100.00 98.31 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 98.18 100.00 100.00 100.00 100.00 98.86 K cassette CG11266,RI_chr2L_7033019_7034764,I_chr2L_7034274_7034764,I_chr2L_7034274_7035406,I_chr2L_7051093_7051366 chr2L + chr2L_7033019_7034764;chr2L_7034274_7034764 chr2L_7033019_7034483,chr2L_7034274_7034483;chr2L_7034694_7034764 chr2L_7034484_7034693 chr2L_7032919_7033018;chr2L_7034765_7034823 100.00 100.00 100.00 100.00 100.00 100.00 91.67 96.55 96.67 100.00 100.00 96.67 100.00 100.00 90.00 95.45 100.00 85.71 100.00 100.00 100.00 77.78 92.31 100.00 83.33 NA 100.00 NA 80.00 92.86 96.30 100.00 87.50 100.00 100.00 NA 90.00 100.00 100.00 96.00 91.67 90.91 100.00 94.12 100.00 94.74 100.00 96.43 93.55 100.00 94.12 100.00 100.00 100.00 93.33 100.00 100.00 96.30 K jcn_only_AD As chr3L - chr3L_11200236_11200299 chr3L_11200236_11200297 chr3L_11199522_11200235;chr3L_11200300_11200790 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.90 96.00 98.33 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.46 100.00 98.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.61 100.00 K jcn_only_AA CCS,I_chr2R_6009946_6010014 chr2R - chr2R_6009964_6010014;chr2R_6009951_6010014 chr2R_6009946_6010014 chr2R_6010015_6010040;chr2R_6009884_6009945 4.06 NA NA 8.70 NA NA 4.55 0.00 0.00 NA NA 4.76 NA NA NA NA NA NA 5.00 3.45 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA 5.88 NA NA 0.00 4.55 10.00 NA 3.57 NA NA NA NA 5.00 NA NA 0.00 5.00 K jcn_only_AD CG8177,I_chr3L_9773353_9773506,I_chr3L_9773534_9773635,I_chr3L_9774319_9774602 chr3L + chr3L_9773309_9773635 chr3L_9773353_9773635 chr3L_9773636_9773735;chr3L_9773253_9773308 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.37 99.22 100.00 100.00 100.00 100.00 100.00 100.00 99.19 98.55 100.00 100.00 99.30 100.00 99.14 98.99 100.00 98.61 100.00 100.00 100.00 98.72 100.00 100.00 100.00 99.10 100.00 100.00 100.00 98.08 100.00 98.28 99.00 100.00 100.00 100.00 100.00 98.75 100.00 100.00 98.52 99.38 81.82 100.00 100.00 98.18 100.00 99.17 100.00 100.00 100.00 K intron_retention CG17660 chr2L - chr2L_1707999_1708060 chr2L_1707998_1707999;chr2L_1708060_1708061 chr2L_1707564_1707998;chr2L_1708061_1708214 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.80 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD inaE chrX + chrX_13678262_13679739;chrX_13678310_13679739 chrX_13678223_13679739 chrX_13679740_13679985;chrX_13677782_13678222 0.00 2.27 0.00 0.00 0.00 2.63 0.00 0.00 0.74 0.00 3.57 0.00 0.00 1.67 0.00 0.00 2.22 0.00 0.00 0.93 0.00 0.00 1.28 0.00 0.00 0.00 2.94 0.00 0.00 0.00 1.52 0.00 0.00 1.01 0.00 0.00 0.00 2.08 6.82 0.00 0.00 1.27 0.00 2.17 NA 2.08 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 1.92 0.00 0.00 0.00 K jcn_only_AD I_chr2L_8029734_8029787,Cka,CG7429 chr2L + chr2L_8030840_8032059;chr2L_8031163_8032059;chr2L_8031036_8032059;chr2L_8031309_8032059 chr2L_8031338_8032059 chr2L_8032060_8032641;chr2L_8030749_8030839 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention ena chr2R + chr2R_15046858_15047299 chr2R_15046857_15046858;chr2R_15047299_15047300 chr2R_15046625_15046857;chr2R_15047300_15047324 0.00 0.00 2.44 2.86 0.00 0.00 2.13 0.00 1.30 0.00 0.00 0.47 0.00 1.75 0.93 3.92 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 3.64 1.54 2.22 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.94 1.46 0.00 0.00 0.85 1.37 0.83 0.00 0.00 0.00 2.29 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 2.44 0.00 0.00 0.67 K cassette CG11984,I_chr3R_4837327_4837383,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4837327_4837766 chr3R_4837327_4837395;chr3R_4837672_4837766 chr3R_4837396_4837671 chr3R_4837227_4837326;chr3R_4837767_4837866 99.53 98.84 98.88 99.08 100.00 100.00 98.75 100.00 99.52 100.00 98.41 100.00 100.00 100.00 100.00 98.21 98.28 100.00 100.00 99.61 98.31 98.53 98.56 99.59 99.44 100.00 99.46 98.24 99.53 98.25 98.59 99.41 99.58 100.00 99.36 98.14 98.99 99.54 99.42 99.63 100.00 99.56 100.00 99.32 99.66 99.53 100.00 99.46 100.00 98.50 99.52 98.17 100.00 99.50 98.89 100.00 100.00 100.00 N intron_retention CG34394,I_chr2L_3365674_3365965,RI_chr2L_3365677_3365965 chr2L - chr2L_3365976_3367244 chr2L_3365975_3365976;chr2L_3367244_3367245 chr2L_3365969_3365975;chr2L_3367245_3367719 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 71.11 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K intron_retention Nup153,I_chrX_16495232_16495296 chrX + chrX_16500042_16500894 chrX_16500041_16500042;chrX_16500894_16500895 chrX_16499883_16500041;chrX_16500895_16501032 0.00 2.94 0.00 13.33 0.00 3.23 5.00 3.12 3.57 0.00 0.00 4.55 7.14 11.76 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 5.56 7.69 3.23 0.00 2.94 4.35 0.00 2.50 6.25 0.00 0.00 0.00 3.33 1.82 5.80 0.00 2.82 4.76 0.00 1.92 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 7.41 0.00 0.00 0.00 K cassette Vha100-1,I_chr3R_24958227_24960770,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24959684_24960770 chr3R_24959684_24960278;chr3R_24960321_24960770 chr3R_24960279_24960320 chr3R_24959583_24959683;chr3R_24960771_24960870 23.81 18.18 20.00 70.59 11.76 35.71 35.00 50.00 19.23 18.75 33.33 81.63 NA 46.15 31.82 33.33 21.43 28.57 NA 17.24 31.58 27.78 17.65 16.67 23.33 43.75 14.29 15.38 23.81 12.00 47.06 36.36 20.00 24.14 18.75 37.04 17.86 13.16 20.69 13.33 25.00 26.83 NA 23.81 28.57 25.93 15.15 NA 28.21 27.27 19.61 20.00 19.05 10.00 33.33 17.24 19.44 28.57 K jcn_only_AA MB8.chr3R.pasa.66,CG1105,RI_chr3R_2892020_2892252,I_chr3R_2892305_2892645 chr3R - chr3R_2892020_2892645 chr3R_2892305_2892645 chr3R_2892646_2892745;chr3R_2891920_2892019 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 1.96 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 2.90 2.27 0.00 0.00 0.00 2.63 0.00 1.54 2.13 0.00 0.00 1.25 5.71 3.33 0.00 0.00 2.08 0.00 1.79 K intron_retention CG31159 chr3R + chr3R_18439846_18439902 chr3R_18439845_18439846;chr3R_18439902_18439903 chr3R_18439683_18439845;chr3R_18439903_18439974 14.29 NA NA NA NA NA NA NA 22.22 NA NA 14.29 NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N jcn_only_AD CG9646 chr2R + chr2R_12936500_12937513 chr2R_12936933_12937513 chr2R_12937514_12937680;chr2R_12936416_12936499 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 70.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA K jcn_only_AA mod(r),I_chrX_515823_515874,RI_chrX_515831_515923,I_chrX_516392_517480 chrX + chrX_515831_515874;chrX_515831_515885 chrX_515831_515923 chrX_515763_515830;chrX_515924_515974 2.29 2.56 0.00 2.70 0.00 3.12 4.17 1.85 6.15 0.00 7.14 0.00 2.94 0.00 0.00 4.17 NA 0.00 12.20 0.00 3.12 3.85 0.00 0.00 6.67 3.33 0.00 0.00 0.00 4.00 8.00 0.00 NA 2.13 NA 12.50 2.04 0.00 4.08 0.00 NA 3.39 0.00 2.44 19.05 0.00 4.65 NA 0.00 0.00 4.84 3.57 0.00 0.00 3.57 0.00 3.45 6.67 K jcn_only_AA CG10254 chr3R - chr3R_19518068_19518139 chr3R_19518083_19518139 chr3R_19518140_19518534;chr3R_19517793_19518067 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 96.00 NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention stc chr2L + chr2L_15113995_15114048 chr2L_15113994_15113995;chr2L_15114048_15114049 chr2L_15113511_15113994;chr2L_15114049_15114213 100.00 100.00 99.13 100.00 100.00 100.00 100.00 99.47 100.00 100.00 100.00 99.60 100.00 98.88 100.00 100.00 100.00 100.00 100.00 99.75 98.82 100.00 100.00 99.61 100.00 100.00 99.65 99.65 100.00 100.00 100.00 100.00 99.76 100.00 100.00 99.66 99.70 99.56 100.00 100.00 100.00 100.00 100.00 100.00 99.59 100.00 100.00 100.00 99.59 100.00 100.00 100.00 99.45 100.00 100.00 100.00 100.00 100.00 K cassette Slip1,RI_chr4_684967_689045,I_chr4_685717_686576,RI_chr4_685717_689045,RI_chr4_687548_689045 chr4 + chr4_684967_689045 chr4_684967_686576;chr4_687548_689045 chr4_686577_687547 chr4_684914_684966;chr4_689046_689145 100.00 97.87 100.00 97.06 100.00 97.67 100.00 100.00 99.23 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 99.23 100.00 100.00 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 98.21 100.00 97.56 99.08 100.00 100.00 100.00 100.00 100.00 100.00 96.15 99.12 100.00 98.08 96.67 97.96 100.00 100.00 99.12 97.14 100.00 97.14 100.00 100.00 100.00 100.00 97.92 100.00 K jcn_only_AA mbc,I_chr3R_19615584_19615649,I_chr3R_19625220_19625288 chr3R + chr3R_19626118_19626200 chr3R_19626118_19626179 chr3R_19625973_19626117;chr3R_19626201_19626586 100.00 100.00 100.00 99.44 100.00 100.00 99.12 100.00 99.50 100.00 100.00 99.36 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.85 100.00 98.91 100.00 99.47 100.00 98.82 100.00 98.44 97.14 100.00 98.72 100.00 100.00 100.00 99.08 99.02 99.44 100.00 100.00 98.53 98.53 99.52 100.00 100.00 100.00 100.00 99.25 98.55 99.38 100.00 100.00 98.31 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA dnc,I_chrX_3150245_3150319,I_chrX_3150351_3152643 chrX + chrX_3226580_3228183 chrX_3226580_3228177 chrX_3226475_3226579;chrX_3228184_3228364 72.47 73.91 74.07 96.88 81.82 70.37 24.32 82.98 72.22 NA NA 86.49 61.90 80.77 66.67 88.57 55.56 63.33 3.12 85.07 NA NA 63.33 77.27 NA 70.00 62.96 NA NA NA 82.86 NA NA 70.83 80.95 95.24 68.18 71.43 76.19 68.42 NA 76.79 71.43 NA NA NA NA 80.00 72.86 72.73 69.23 NA NA NA 71.43 NA NA NA K intron_retention CG1622,REI_chrX_13191277_13191339,RI_chrX_13191703_13191779,I_chrX_13191916_13192167,I_chrX_13192409_13192738,EI_chrX_13192857_13192928 chrX + chrX_13191685_13191779 chrX_13191684_13191685;chrX_13191779_13191780 chrX_13191617_13191684;chrX_13191780_13191847 0.41 0.00 0.00 2.13 0.00 0.00 0.00 1.39 1.61 0.76 6.67 2.86 4.76 0.00 0.00 0.00 0.00 0.00 0.00 1.44 0.00 0.00 0.68 1.27 0.00 0.00 3.02 3.31 0.00 0.00 5.13 0.00 1.20 0.91 0.00 2.73 0.83 1.20 0.28 1.96 1.04 0.52 0.00 0.00 0.98 0.41 0.00 0.00 2.27 1.06 1.27 1.57 0.00 0.00 0.00 2.04 0.00 1.06 K intron_retention CG3114,RI_chrX_168562_168685 chrX - chrX_165647_167215 chrX_165646_165647;chrX_167215_167216 chrX_165521_165646;chrX_167216_167420 25.00 NA NA NA NA NA 25.00 29.41 39.13 NA NA 17.65 NA NA 27.78 42.86 30.77 NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 22.22 NA NA 0.00 NA 6.67 11.76 NA 39.13 NA NA NA NA NA NA 23.81 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG11163,I_chr2R_1666219_1669711 chr2R - chr2R_1666133_1670219 chr2R_1666219_1670219 chr2R_1670220_1670281;chr2R_1666119_1666132 90.48 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.48 NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG1815,I_chr3R_27501104_27501167,I_chr3R_27501104_27501176 chr3R + chr3R_27501104_27501176;chr3R_27501104_27501179 chr3R_27501104_27501167 chr3R_27501004_27501103;chr3R_27501180_27501267 52.38 60.00 48.65 66.10 75.00 63.33 44.00 55.17 58.82 46.34 42.42 40.62 60.00 48.39 51.16 57.45 60.61 60.71 65.71 59.46 63.16 44.44 45.83 67.35 56.25 48.48 62.50 76.67 47.17 46.15 44.00 52.38 45.65 50.72 61.36 50.00 61.02 43.75 48.94 45.78 54.55 54.43 56.67 52.50 43.10 50.72 73.68 42.48 51.47 45.45 60.87 50.00 56.52 44.44 54.90 55.56 46.88 50.00 K intron_retention noncoding_4408 chr2R + chr2R_618251_618301 chr2R_618250_618251;chr2R_618301_618302 chr2R_618064_618250;chr2R_618302_618460 67.43 NA NA NA NA NA NA 71.43 61.90 NA NA 60.00 NA NA 66.67 71.43 NA NA NA 68.18 NA NA NA NA NA NA NA NA 92.31 NA 88.89 NA NA 58.33 NA NA NA NA NA 60.00 NA 66.67 NA 80.00 NA NA NA NA 72.22 NA 64.29 NA NA NA NA NA 72.73 52.94 K intron_retention CG3397,RI_chr3R_7818607_7818970 chr3R - chr3R_7809747_7809801 chr3R_7809746_7809747;chr3R_7809801_7809802 chr3R_7809208_7809746;chr3R_7809802_7810364 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 0.75 0.00 0.00 0.00 0.00 4.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor cic,RI_chr3R_16122222_16123529 chr3R + chr3R_16122222_16123529;chr3R_16122222_16122818 chr3R_16122222_16124105 chr3R_16122122_16122221;chr3R_16124106_16124254 94.87 96.46 95.88 93.51 97.59 97.59 91.53 95.03 95.54 88.89 95.89 95.87 94.81 94.87 97.74 88.61 96.67 96.83 95.29 96.44 97.98 57.86 94.74 95.31 93.97 86.32 91.26 75.70 78.87 86.00 96.88 89.58 82.11 97.10 93.75 76.55 93.14 95.00 93.62 91.77 86.27 97.26 97.37 88.39 78.05 92.22 96.61 84.81 96.24 95.00 94.70 93.06 95.12 95.65 97.58 95.08 97.73 90.67 K intron_retention Pdp1,RI_chr3L_7809841_7810536,I_chr3L_7813130_7818683,I_chr3L_7831960_7846282 chr3L - chr3L_7809826_7810536 chr3L_7809825_7809826;chr3L_7810536_7810537 chr3L_7809741_7809825;chr3L_7810537_7810636 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG7091,I_chr3R_8805200_8805246,RI_chr3R_8805541_8805680,I_chr3R_8809774_8809832 chr3R + chr3R_8805200_8805257 chr3R_8805200_8805246 chr3R_8805100_8805199;chr3R_8805258_8805346 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.35 1.37 0.00 0.00 0.00 0.00 0.00 0.00 3.85 1.16 0.00 1.82 4.17 0.00 5.56 0.00 5.71 0.00 0.00 0.00 2.17 0.00 0.00 0.00 3.12 0.00 2.63 0.00 2.13 0.00 0.00 1.14 0.00 0.00 3.23 0.00 NA 1.49 2.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.53 K alternative_donor Dscam,I_chr2R_3211474_3212074,I_chr2R_3212243_3212342,F_chr2R_3219886_3228832,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3211474_3212086 chr2R_3211474_3212074 chr2R_3211374_3211473;chr2R_3212087_3212174 0.00 0.00 0.00 0.00 NA 0.00 NA NA 3.70 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA 1.96 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 NA 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 4.00 3.45 0.00 6.25 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 K intron_retention shot,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9753632_9753953 chr2R_9753631_9753632;chr2R_9753953_9753954 chr2R_9753566_9753631;chr2R_9753954_9754137 0.71 0.00 2.44 2.27 0.00 0.00 5.62 2.86 0.62 0.00 0.00 2.49 0.00 0.00 1.04 3.53 1.12 1.00 5.26 2.25 1.23 0.47 0.00 0.00 0.00 2.11 1.84 3.12 0.97 0.79 0.00 0.00 0.00 2.55 0.72 0.00 1.11 0.00 0.00 1.42 0.00 0.29 2.74 1.25 0.82 0.00 1.00 0.62 0.00 0.71 0.84 0.00 1.43 0.00 0.00 0.00 1.08 0.00 K intron_retention CG5285,CG5292 chr3R + chr3R_12976690_12976750 chr3R_12976689_12976690;chr3R_12976750_12976751 chr3R_12976320_12976689;chr3R_12976751_12977415 0.00 NA 0.00 0.00 NA NA 0.00 7.41 6.67 NA NA 0.00 NA NA NA NA NA NA NA 6.67 NA NA NA NA NA 0.00 NA NA 0.00 NA 22.22 NA 0.00 0.00 NA NA NA NA 0.00 NA NA 7.41 NA NA NA 5.26 NA NA 5.00 NA NA NA NA NA 0.00 14.29 NA 0.00 K multi_cassette Xrp1,I_chr3R_14741648_14750799,I_chr3R_14750298_14750799 chr3R + chr3R_14741648_14750799 chr3R_14741648_14745144;chr3R_14745235_14746134;chr3R_14747042_14750799 chr3R_14745145_14745234;chr3R_14746135_14747041 chr3R_14741548_14741647;chr3R_14750800_14750899 98.55 98.31 98.21 96.75 97.62 100.00 83.62 98.90 97.37 98.04 93.48 98.97 100.00 97.96 100.00 98.68 100.00 100.00 98.36 98.02 100.00 99.53 98.65 99.09 96.74 95.24 97.64 96.77 80.56 98.85 99.59 100.00 99.29 98.94 98.63 95.56 100.00 98.59 100.00 99.21 93.18 97.25 100.00 99.10 96.72 94.57 98.55 98.68 98.89 96.30 98.23 97.14 100.00 98.28 98.46 100.00 98.53 98.04 K jcn_only_AD CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8163458_8173015 chr2L_8163519_8173015 chr2L_8173016_8173209;chr2L_8163297_8163457 100.00 98.77 100.00 98.87 95.31 100.00 98.25 99.58 100.00 100.00 98.92 99.19 100.00 100.00 98.44 99.49 100.00 100.00 98.77 98.91 99.09 96.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 99.57 98.81 100.00 98.68 100.00 98.90 100.00 100.00 100.00 100.00 100.00 NA 100.00 97.56 100.00 98.62 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 NA K alternative_donor CG17928 chr2L + chr2L_16792145_16792369 chr2L_16792274_16792369 chr2L_16792370_16792752;chr2L_16791943_16792144 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K intron_retention sta chrX - chrX_1376892_1376948 chrX_1376891_1376892;chrX_1376948_1376949 chrX_1376851_1376891;chrX_1376949_1376950 99.98 99.99 99.98 100.00 99.98 99.98 99.98 99.98 99.99 100.00 99.98 99.98 99.97 100.00 99.98 99.98 99.94 100.00 99.98 99.99 99.98 99.96 99.97 99.98 100.00 99.98 99.99 99.98 99.97 99.98 99.89 99.98 99.98 99.98 99.98 99.98 99.92 99.93 99.96 99.97 99.99 99.99 99.97 99.96 99.99 99.99 99.99 100.00 100.00 99.93 99.99 99.97 99.99 99.99 99.97 99.97 99.99 99.98 N intron_retention Rho1,I_chr2R_11990455_11992537,RI_chr2R_11991687_11992537 chr2R + chr2R_11991280_11992280 chr2R_11991279_11991280;chr2R_11992280_11992281 chr2R_11991116_11991279;chr2R_11992281_11992329 52.50 NA NA 33.33 NA NA NA NA NA NA NA 56.52 NA NA NA NA NA NA NA NA NA 48.48 NA NA NA 43.75 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG6686 chr2L - chr2L_11984663_11984724 chr2L_11984662_11984663;chr2L_11984724_11984725 chr2L_11984327_11984662;chr2L_11984725_11984950 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RhoGEF3,I_chr3L_298140_298220 chr3L + chr3L_298140_298958 chr3L_298139_298140;chr3L_298958_298959 chr3L_298040_298139;chr3L_298959_299016 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 22.22 NA NA NA 5.17 NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor rl,I_chr2RHet_199154_207044,RI_chr2RHet_203476_203577,RI_chr2RHet_203592_207044,I_chr2RHet_232696_247338,RI_chr2RHet_240197_247338 chr2RHet + chr2RHet_198760_198964 chr2RHet_198817_198964 chr2RHet_198965_199153;chr2RHet_198753_198759 50.00 NA NA 50.00 NA NA 55.56 43.75 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 55.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA K intron_retention phtf,I_chr2R_2629598_2630209 chr2R + chr2R_2631050_2631097 chr2R_2631049_2631050;chr2R_2631097_2631098 chr2R_2630542_2631049;chr2R_2631098_2632041 0.00 0.00 NA 4.35 0.00 NA 0.00 3.45 0.00 0.00 NA 3.03 12.50 0.00 9.09 5.26 NA 5.56 6.67 0.00 5.56 0.00 0.00 3.45 0.00 NA 12.00 7.14 NA 0.00 0.00 NA 0.00 6.67 NA 0.00 2.13 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA NA 3.23 6.06 0.00 0.00 6.25 NA NA 4.35 0.00 0.00 0.00 K alternative_acceptor Gmer chr2R - chr2R_18775312_18775372 chr2R_18775317_18775372 chr2R_18775373_18775930;chr2R_18775095_18775311 100.00 NA NA 100.00 NA 100.00 NA 100.00 92.31 NA NA 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA NA 90.00 NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA NA 100.00 100.00 100.00 91.67 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 K intron_retention cv-2 chr2R - chr2R_17251293_17254167 chr2R_17251292_17251293;chr2R_17254167_17254168 chr2R_17251204_17251292;chr2R_17254168_17254445 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 15.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 NA NA K intron_retention CG3860,RI_chr2R_19882285_19882350 chr2R - chr2R_19882430_19882498 chr2R_19882429_19882430;chr2R_19882498_19882499 chr2R_19882351_19882429;chr2R_19882499_19882557 100.00 100.00 94.44 96.15 100.00 100.00 100.00 96.15 100.00 NA 91.67 100.00 100.00 92.31 100.00 92.86 100.00 100.00 95.00 97.06 100.00 100.00 100.00 90.91 100.00 100.00 94.44 NA NA 100.00 96.67 NA NA 100.00 91.67 100.00 91.67 100.00 100.00 100.00 NA 96.30 100.00 100.00 NA 100.00 100.00 100.00 94.44 92.86 100.00 90.91 100.00 100.00 95.00 100.00 100.00 100.00 K intron_retention CG31678 chr2L - chr2L_20675571_20675636 chr2L_20675570_20675571;chr2L_20675636_20675637 chr2L_20674995_20675570;chr2L_20675637_20676010 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.71 0.00 0.00 0.00 0.00 0.00 0.00 12.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Chc,RI_chrX_15728405_15729273,I_chrX_15728405_15729401,I_chrX_15728946_15729357 chrX - chrX_15728405_15729370;chrX_15728405_15729476;chrX_15728405_15729357;chrX_15728405_15729319 chrX_15728405_15729260 chrX_15728305_15728404;chrX_15729477_15729501 0.60 0.00 0.00 0.89 3.45 2.08 1.46 0.62 1.27 0.00 0.00 1.54 1.27 1.30 0.00 0.60 0.00 4.35 1.08 1.57 0.00 2.00 0.00 2.44 0.00 1.64 0.00 0.00 4.17 2.94 1.11 0.00 0.00 1.95 2.22 0.00 0.00 0.00 0.00 1.61 0.00 0.72 1.41 0.00 0.00 4.35 0.00 0.00 0.62 5.26 2.04 0.00 0.00 0.00 0.00 0.00 4.35 0.00 K intron_retention CG31601 chr2L - chr2L_22043194_22043246 chr2L_22043193_22043194;chr2L_22043246_22043247 chr2L_22043102_22043193;chr2L_22043247_22043283 8.01 13.64 7.69 1.41 7.14 6.25 12.20 13.04 8.33 NA 6.90 9.26 4.65 7.50 9.26 4.05 0.00 13.33 8.62 5.08 18.75 NA 15.38 0.00 19.05 28.00 19.35 NA 33.33 0.00 10.00 NA 6.45 9.72 21.74 41.18 0.00 NA NA 0.00 23.53 2.99 6.52 3.85 25.00 0.00 0.00 8.33 10.14 0.00 0.00 NA NA NA 10.91 7.14 11.76 0.00 K alternative_acceptor l(3)neo18 chr3L - chr3L_12131045_12131115 chr3L_12131064_12131115 chr3L_12131116_12131345;chr3L_12130938_12131044 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.45 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.26 0.00 N jcn_only_AA noncoding_14363 chr3LHet - chr3LHet_709113_709194;chr3LHet_709127_709194 chr3LHet_709103_709194 chr3LHet_709195_709261;chr3LHet_709044_709102 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.50 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 K alternative_donor CG10681 chr3L + chr3L_12494819_12494874 chr3L_12494823_12494874 chr3L_12494875_12495047;chr3L_12494613_12494818 5.16 NA NA 4.76 NA NA 5.56 7.14 NA NA NA 0.00 NA NA NA 10.53 NA NA NA 13.33 NA NA NA NA NA NA NA NA NA NA NA NA NA 10.53 NA NA NA NA NA 6.25 NA 0.00 NA NA NA NA NA NA 4.76 0.00 0.00 NA NA NA NA NA NA NA K intron_retention CG1116 chr3R + chr3R_1045578_1045637 chr3R_1045577_1045578;chr3R_1045637_1045638 chr3R_1045416_1045577;chr3R_1045638_1045855 16.03 NA NA NA NA NA NA 14.29 NA NA NA 18.52 NA NA NA NA NA NA NA 18.75 NA NA 50.00 14.29 NA NA 37.50 NA NA 41.67 53.85 NA 9.52 NA NA 0.00 NA NA 18.18 16.67 NA 15.38 NA NA NA 21.43 20.00 NA 11.76 13.33 10.53 NA 7.69 9.09 NA 22.22 12.50 NA K jcn_only_AA CG14425,Sxl,CG14425_Sxl,CEF_chrX_6984538_6992033 chrX - chrX_6990969_6991030;chrX_6986204_6991030 chrX_6986156_6991030 chrX_6991031_6991040 26.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.00 NA NA NA NA NA NA NA NA NA NA 37.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA spir,I_chr2L_20334199_20334626,I_chr2L_20336550_20339058 chr2L + chr2L_20336405_20336466;chr2L_20336405_20336463 chr2L_20336405_20336469 chr2L_20336338_20336404;chr2L_20336470_20336529 6.70 11.96 4.76 8.73 1.39 4.26 4.61 5.59 6.85 5.56 4.88 4.88 7.04 4.17 8.16 6.67 6.82 8.42 8.57 3.91 8.82 7.95 8.50 4.62 2.90 7.53 5.93 11.18 6.75 4.51 7.30 9.86 10.68 7.88 8.91 4.90 6.57 7.87 6.99 5.67 8.70 6.70 5.00 7.48 3.36 4.14 5.66 7.30 6.86 4.67 4.72 5.00 1.39 3.03 8.27 6.80 6.72 4.85 K alternative_acceptor Vha16,I_chr2R_2519645_2520499,RI_chr2R_2519646_2519840,I_chr2R_2519646_2520292,I_chr2R_2519646_2520298,I_chr2R_2519775_2520499 chr2R - chr2R_2519646_2520499 chr2R_2519775_2520499 chr2R_2520500_2520599;chr2R_2519546_2519645 14.06 14.51 14.12 16.19 12.82 12.39 26.60 19.82 16.18 8.70 15.32 17.80 18.21 15.64 14.13 14.31 16.51 15.67 17.83 17.58 14.06 11.64 13.24 11.21 20.48 27.25 17.69 12.90 22.86 9.96 12.11 8.81 13.45 18.18 17.95 27.75 8.65 9.20 10.48 13.51 16.87 12.80 13.96 8.29 9.89 8.47 10.00 8.62 13.32 12.28 14.50 12.36 12.75 16.67 14.29 11.05 14.29 8.09 K intron_retention CG18081 chr3L - chr3L_15827552_15827833 chr3L_15827551_15827552;chr3L_15827833_15827834 chr3L_15827181_15827551;chr3L_15827834_15827979 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention fog,I_chrX_22231114_22234174,I_chrX_22231114_22237956,I_chrX_22231114_22238023,I_chrX_22246738_22255641,RE_chrX_22256169_22256990 chrX - chrX_22231114_22246594 chrX_22231113_22231114;chrX_22246594_22246595 chrX_22231014_22231113;chrX_22246595_22246737 0.00 0.00 0.00 4.76 0.00 0.00 8.33 0.00 1.75 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA 2.94 NA 0.00 0.00 0.00 0.00 0.00 NA 1.85 0.00 0.00 NA 0.00 NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention CG7824 chr3R - chr3R_25684441_25684496 chr3R_25684440_25684441;chr3R_25684496_25684497 chr3R_25683370_25684440;chr3R_25684497_25684659 0.00 0.00 0.00 20.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 3.70 2.13 0.00 0.00 3.70 2.99 0.00 2.27 0.00 0.00 4.76 0.00 18.75 26.32 4.17 0.00 6.67 0.00 0.00 0.00 4.17 7.41 6.67 3.85 0.00 0.00 6.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 3.85 8.33 0.00 0.00 2.50 0.00 K alternative_acceptor hppy,I_chr2R_15066378_15066915,I_chr2R_15105700_15106080,I_chr2R_15106144_15108248 chr2R + chr2R_15066378_15066915;chr2R_15066378_15067003 chr2R_15066378_15066881 chr2R_15066360_15066377;chr2R_15067004_15067015 29.41 36.84 33.33 40.00 25.00 26.67 55.17 60.00 45.24 50.00 25.00 37.50 50.00 28.57 26.67 25.00 29.41 25.00 23.81 25.71 42.86 15.91 27.59 40.00 33.33 30.77 47.37 16.67 12.50 38.10 13.33 NA 30.77 47.83 33.33 29.41 31.58 15.79 11.11 17.50 30.00 43.48 30.00 14.55 33.33 13.33 17.65 6.90 28.21 40.00 31.25 27.78 15.38 NA 31.58 16.67 NA 16.67 K intron_retention Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2629527_2629913 chr3L_2629526_2629527;chr3L_2629913_2629914 chr3L_2629427_2629526;chr3L_2629914_2629921 19.16 21.08 18.75 29.46 26.23 19.71 30.92 16.74 29.96 37.04 44.51 21.88 30.27 18.92 15.94 21.18 25.35 14.84 20.83 17.31 23.79 14.29 16.61 23.91 23.81 16.79 27.62 25.58 17.95 14.29 16.67 20.47 19.33 22.20 12.86 24.43 21.65 18.30 17.50 15.31 18.58 20.33 19.16 19.12 8.82 10.67 13.28 15.75 17.85 25.22 17.25 24.32 12.05 13.51 20.37 19.39 14.81 9.43 K intron_retention CG40263,F_chr2RHet_1265687_1293040,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1333469_1335106 chr2RHet_1333468_1333469;chr2RHet_1335106_1335107 chr2RHet_1333290_1333468;chr2RHet_1335107_1335154 61.11 NA NA NA NA NA NA NA NA NA 61.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K mutually_exclusive I_chr3L_1494947_1496080,pUf68,I_chr3L_1499710_1499771,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1499338_1499771,chr3L_1499880_1501798;chr3L_1499338_1501345,chr3L_1501407_1501798 chr3L_1499338_1500244,chr3L_1500389_1501798 chr3L_1499772_1499879;chr3L_1501346_1501406 chr3L_1500245_1500388 chr3L_1499043_1499337;chr3L_1501799_1501892 67.95 NA 60.00 70.00 NA NA NA 75.00 64.29 100.00 40.00 76.92 NA NA 75.00 66.67 NA NA 75.00 58.33 NA 100.00 50.00 80.00 50.00 71.43 85.71 58.33 NA NA 78.26 NA 40.00 80.00 57.14 88.89 NA 60.00 NA 40.00 66.67 69.23 NA 75.00 100.00 60.00 NA 40.00 63.64 57.14 50.00 80.00 NA 80.00 62.50 50.00 75.00 80.00 K jcn_only_AA oho23B,I_chr2L_2856176_2856244,I_chr2L_2856573_2856630,RI_chr2L_2856673_2856772 chr2L + chr2L_2856176_2856218;chr2L_2856176_2856222 chr2L_2856176_2856246 chr2L_2856076_2856175;chr2L_2856247_2856287 99.92 99.85 99.90 99.85 99.97 99.98 99.94 99.81 99.94 99.96 99.92 99.95 99.81 99.95 99.82 99.91 99.88 99.89 99.89 99.95 99.88 99.82 99.94 99.93 99.78 99.92 99.94 99.89 99.96 99.95 99.84 100.00 100.00 99.83 100.00 99.92 99.91 99.90 99.90 100.00 99.96 99.92 99.82 99.90 99.93 99.92 99.82 99.97 99.97 99.90 99.84 99.95 99.96 99.71 99.91 99.86 99.89 99.95 K intron_retention CG3056 chrX + chrX_1267081_1267177 chrX_1267080_1267081;chrX_1267177_1267178 chrX_1266494_1267080;chrX_1267178_1268716 96.15 95.83 100.00 100.00 100.00 100.00 96.55 100.00 100.00 93.33 94.12 94.34 93.75 100.00 96.00 100.00 95.00 95.00 95.83 97.62 88.24 96.67 96.88 96.43 83.33 85.00 100.00 95.24 90.91 87.10 96.00 100.00 92.16 97.73 93.10 89.29 92.31 95.45 96.43 97.22 100.00 97.37 100.00 95.24 89.66 92.31 95.45 97.06 97.14 100.00 100.00 100.00 93.33 94.74 96.15 100.00 100.00 87.50 K alternative_donor EI_chr2L_13164741_13164824,Sfmbt chr2L - chr2L_13170785_13171381 chr2L_13170785_13171312 chr2L_13169657_13170784;chr2L_13171382_13171665 34.21 33.33 25.71 39.62 35.48 18.75 36.17 42.31 38.46 13.51 40.91 30.51 25.00 41.38 30.56 36.36 30.77 27.27 53.33 37.04 36.67 5.26 35.00 37.29 22.86 31.03 34.48 16.28 28.89 30.23 34.62 31.25 37.70 36.17 22.58 34.21 34.44 42.50 28.81 45.45 26.32 27.78 22.58 35.71 26.42 34.62 48.39 20.69 33.33 31.25 31.48 34.29 39.02 35.29 25.58 33.33 52.27 35.71 K cassette CG34394,I_chr2L_3365674_3365965 chr2L - chr2L_3361444_3362998 chr2L_3361444_3362415;chr2L_3362719_3362998 chr2L_3362416_3362718 chr2L_3360996_3361443;chr2L_3362999_3363195 23.81 25.00 22.22 43.33 19.05 23.81 32.35 46.88 41.67 16.28 26.32 34.55 33.33 35.00 28.57 52.00 22.22 23.08 35.00 28.85 27.27 34.29 25.64 16.22 21.88 44.00 27.27 34.55 19.54 26.67 21.88 13.79 28.77 30.30 17.95 28.57 24.59 17.14 36.96 25.93 16.67 20.69 26.32 21.62 35.29 17.14 15.00 13.45 20.37 10.34 10.00 21.74 16.67 14.29 20.00 18.18 20.00 13.79 K alternative_donor bun,I_chr2L_12520177_12536274,I_chr2L_12537393_12537634,RI_chr2L_12540901_12546409 chr2L - chr2L_12539487_12540515 chr2L_12539487_12540476 chr2L_12537746_12539486;chr2L_12540516_12540692 100.00 92.31 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 95.24 100.00 93.33 100.00 100.00 97.78 92.86 88.89 96.00 100.00 100.00 100.00 94.74 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 90.91 95.45 92.31 NA 94.59 100.00 100.00 NA NA 88.89 100.00 93.33 85.71 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 K alternative_acceptor SWAP,RI_chrX_936466_936762,I_chrX_936466_936835,RI_chrX_936919_937245,RI_chrX_938935_938985,I_chrX_941459_982652 chrX + chrX_936466_936762;chrX_936466_936966 chrX_936466_936835 chrX_936366_936465;chrX_936967_937018 18.75 0.00 16.67 13.33 16.67 14.29 23.53 25.00 9.09 33.33 NA 21.43 14.29 28.57 25.00 NA 25.00 33.33 20.00 13.33 NA 25.00 28.57 33.33 NA NA 12.50 NA 22.22 40.00 9.09 0.00 14.29 35.71 16.67 NA 50.00 0.00 0.00 18.75 77.78 16.67 NA 16.67 0.00 22.22 0.00 16.67 27.78 9.09 23.08 0.00 0.00 25.00 30.00 28.57 0.00 33.33 K intron_retention CG2076 chrX + chrX_10985226_10985323 chrX_10985225_10985226;chrX_10985323_10985324 chrX_10985084_10985225;chrX_10985324_10985660 0.00 0.00 2.15 1.32 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 3.51 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.48 0.00 2.20 2.20 3.56 0.00 0.80 0.00 0.99 0.73 0.00 0.91 0.97 0.00 0.52 1.77 1.46 0.00 0.00 0.58 0.00 0.46 0.35 0.00 0.00 0.32 1.06 0.00 0.67 1.07 0.00 0.00 0.00 0.00 K multi_cassette plexA,RI_chr4_1036247_1047588,RI_chr4_1040642_1047395,RI_chr4_1044307_1046841,RF_chr4_1044307_1047399 chr4 - chr4_1036247_1047588 chr4_1036247_1037001;chr4_1039336_1039395;chr4_1040642_1042867;chr4_1044307_1047588 chr4_1037002_1039335;chr4_1039396_1040641;chr4_1042868_1044306 chr4_1036147_1036246;chr4_1047589_1047625 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette nuf,I_chr3L_14224426_14225035,I_chr3L_14224736_14225035 chr3L + chr3L_14224426_14225026 chr3L_14224426_14224696;chr3L_14224736_14225026 chr3L_14224697_14224735 chr3L_14224399_14224425;chr3L_14225027_14225383 36.36 NA NA NA NA NA NA 36.36 25.00 NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor lwr,RI_chr2L_542347_542429 chr2L - chr2L_542347_542429;chr2L_542380_542429 chr2L_542351_542429 chr2L_542430_542529;chr2L_542247_542346 93.89 93.83 96.92 91.01 95.65 95.16 92.31 94.38 93.07 95.08 98.15 92.25 89.09 96.55 94.67 88.89 93.33 94.52 97.06 92.68 98.18 92.50 92.31 95.96 100.00 92.94 97.18 92.96 90.77 97.22 95.40 90.41 95.12 92.93 94.29 90.32 93.33 95.83 91.21 93.33 96.83 92.19 94.23 98.68 91.26 90.00 95.29 96.81 93.89 92.31 90.91 94.92 98.73 96.70 90.24 95.28 90.54 92.44 K intron_retention Ppcs chr3R - chr3R_14967996_14971202 chr3R_14967995_14967996;chr3R_14971202_14971203 chr3R_14967810_14967995;chr3R_14971203_14971646 0.00 0.00 NA 6.67 NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 7.69 NA NA NA NA 0.00 NA 4.35 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 0.00 K multi_cassette CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8174699_8176572 chr2L_8174699_8175175;chr2L_8175398_8175994;chr2L_8176052_8176572 chr2L_8175176_8175397;chr2L_8175995_8176051 chr2L_8174536_8174698;chr2L_8176573_8176806 6.50 4.81 7.94 14.41 3.85 3.74 4.58 8.57 4.72 12.50 8.05 5.67 5.75 10.84 4.58 7.94 19.67 10.14 4.88 6.91 7.06 6.47 7.22 10.07 5.66 7.69 5.48 13.24 6.17 7.69 4.20 8.00 9.78 8.61 4.08 6.50 8.04 5.22 5.22 7.30 12.12 5.85 8.22 8.47 2.27 4.35 6.76 7.14 5.50 10.00 4.10 3.12 4.76 4.76 6.67 3.45 5.13 4.76 K intron_retention Hsf,I_chr2R_14018415_14018474,RI_chr2R_14021578_14021911,RI_chr2R_14021614_14021911 chr2R - chr2R_14021614_14021911 chr2R_14021613_14021614;chr2R_14021911_14021912 chr2R_14021514_14021613;chr2R_14021912_14022011 90.45 NA NA NA NA NA 92.31 100.00 94.12 NA NA 90.00 NA NA 90.91 100.00 NA NA 83.33 90.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 92.86 NA NA NA NA NA NA NA 69.23 87.50 NA NA NA NA NA 81.25 NA NA NA NA NA 66.67 NA NA NA K intron_retention Pvr,I_chr2L_8226604_8228082,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8226604_8228082 chr2L_8226603_8226604;chr2L_8228082_8228083 chr2L_8226504_8226603;chr2L_8228083_8228182 76.47 NA 68.75 56.00 60.00 83.33 55.56 68.42 55.56 NA NA 75.86 76.47 76.47 77.78 70.59 56.25 90.00 76.47 71.43 NA NA 81.82 80.00 NA 70.00 92.86 NA NA 88.89 NA NA NA 69.23 NA 87.50 81.25 NA 60.00 77.78 NA 86.36 NA 63.64 NA NA NA 87.50 76.67 NA 88.89 NA NA NA 57.89 NA NA NA K intron_retention CG11242,Oseg6 chr2R - chr2R_15374046_15374097 chr2R_15374045_15374046;chr2R_15374097_15374098 chr2R_15373674_15374045;chr2R_15374098_15374290 4.62 1.72 5.31 6.62 3.80 2.97 3.23 5.67 4.31 0.00 5.68 6.79 4.62 8.86 5.88 7.50 8.24 1.83 5.61 3.40 2.33 6.98 3.57 4.39 2.50 3.33 8.94 9.09 6.25 4.69 3.54 6.90 12.20 6.08 5.06 3.66 5.88 4.40 0.86 2.46 0.00 4.47 3.61 4.17 3.66 2.52 4.00 4.76 5.32 6.19 7.63 2.27 5.80 5.22 6.67 5.22 3.39 3.85 K intron_retention CG2316,I_chr4_208796_210623,I_chr4_209150_214298,I_chr4_209369_210623,I_chr4_209875_210055,I_chr4_209875_210628,I_chr4_209875_213969,RI_chr4_209875_214450,I_chr4_210688_211303,RI_chr4_210688_211927,I_chr4_210688_213991,I_chr4_210688_214019,I_chr4_210688_214049,RI_chr4_210688_214450 chr4 - chr4_209875_214298 chr4_209874_209875;chr4_214298_214299 chr4_209775_209874;chr4_214299_214311 18.75 NA NA 18.75 NA NA 25.00 15.38 28.57 NA NA 26.32 NA NA NA 9.09 NA NA 30.77 11.11 NA NA NA NA NA NA NA NA NA NA NA NA NA 12.00 NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA K intron_retention slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,RI_chr2R_20289332_20289739,I_chr2R_20289332_20289846,I_chr2R_20289332_20290093 chr2R - chr2R_20289332_20289739 chr2R_20289331_20289332;chr2R_20289739_20289740 chr2R_20289232_20289331;chr2R_20289740_20289839 97.33 100.00 97.50 93.15 94.44 100.00 98.39 98.81 94.81 100.00 95.83 98.65 95.65 97.92 97.56 96.30 97.30 97.37 92.45 97.33 96.55 96.15 94.74 96.30 100.00 97.50 100.00 100.00 97.06 95.83 97.37 100.00 96.00 96.30 100.00 100.00 94.74 100.00 96.88 96.08 100.00 95.00 100.00 95.65 90.91 91.67 100.00 95.83 98.81 100.00 97.87 100.00 93.33 100.00 96.15 93.75 100.00 96.43 K alternative_donor Tak1,I_chrX_20388150_20389255 chrX - chrX_20388150_20392250;chrX_20388150_20389255 chrX_20388150_20388725 chrX_20388050_20388149;chrX_20392251_20392299 18.00 12.50 17.86 11.36 12.96 19.23 19.78 19.23 15.43 17.31 20.69 13.01 22.45 18.00 18.87 25.00 15.69 18.31 20.97 15.62 15.28 18.25 13.92 13.95 18.00 20.75 13.79 28.17 18.87 16.67 19.72 21.05 13.93 18.18 16.67 20.31 7.24 10.34 10.83 20.95 25.42 16.41 15.00 18.06 14.29 27.16 19.48 33.33 16.81 17.24 20.55 17.78 17.78 12.24 18.06 12.20 18.37 26.58 K intron_retention RpL23,E_chr2R_18742271_18742349,E_chr2R_18742308_18742967 chr2R + chr2R_18742382_18742967 chr2R_18742381_18742382;chr2R_18742967_18742968 chr2R_18742355_18742381;chr2R_18742968_18743038 0.00 0.01 0.00 0.03 0.00 0.04 0.00 0.00 0.05 0.00 0.00 0.02 0.03 0.00 0.02 0.00 0.00 0.00 0.02 0.03 0.00 0.00 0.00 0.03 0.00 0.00 0.13 0.15 0.04 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.04 0.00 0.02 0.00 K intron_retention RI_chr3L_707623_707678,CkIIalpha-i3,CG13896,RI_chr3L_711692_711744 chr3L - chr3L_711688_711744 chr3L_711687_711688;chr3L_711744_711745 chr3L_711592_711687;chr3L_711745_711774 56.70 NA NA 50.00 NA NA 47.37 36.84 64.00 NA NA NA 63.64 53.85 NA 65.00 60.00 56.25 65.00 82.14 NA 70.00 NA NA NA NA NA NA NA NA 46.67 NA NA 57.14 NA NA NA NA NA NA NA 58.82 NA NA NA NA NA NA 52.00 NA NA NA NA NA 50.00 NA NA 46.15 K intron_retention CG32529 chrX + chrX_19766478_19794648 chrX_19766477_19766478;chrX_19794648_19794649 chrX_19766320_19766477;chrX_19794649_19795521 41.88 NA NA NA NA NA NA NA 40.91 NA NA NA NA NA NA NA NA NA NA 69.23 NA 5.00 NA NA NA NA NA 42.86 NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA K intron_retention I_chr2R_7165832_7165906,CG9062,I_chr2R_7171366_7171418 chr2R - chr2R_7168656_7168778 chr2R_7168655_7168656;chr2R_7168778_7168779 chr2R_7167919_7168655;chr2R_7168779_7168884 82.61 80.95 84.00 89.47 85.00 66.67 100.00 83.72 85.71 75.00 76.47 81.08 91.30 95.45 85.71 84.62 93.33 91.67 84.62 83.82 71.43 82.61 78.79 84.00 81.25 91.30 73.91 78.95 84.62 61.29 84.00 84.00 78.95 83.72 78.26 95.45 75.86 76.00 89.47 80.00 76.67 77.08 82.35 90.32 83.78 71.74 52.63 81.08 83.33 66.67 61.76 86.67 94.44 70.83 83.33 78.26 75.86 72.34 K jcn_only_AA CG5830,I_chr3L_15992339_15996998,I_chr3L_15996923_15996998 chr3L - chr3L_15988946_15996998 chr3L_15996923_15996998 chr3L_15996999_15997098;chr3L_15988710_15988945 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 1.05 10.00 0.00 6.25 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 3.85 0.00 0.00 0.00 3.45 3.45 1.67 NA 4.35 1.43 0.00 0.00 0.00 2.13 0.00 0.00 0.00 1.45 3.57 3.77 NA 5.00 6.67 0.00 3.33 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 K intron_retention Su(dx),RE_chr2L_2038009_2039919,CG31672 chr2L + chr2L_2042570_2042652 chr2L_2042569_2042570;chr2L_2042652_2042653 chr2L_2041647_2042569;chr2L_2042653_2042851 0.00 0.00 0.00 2.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention gro chr3R + chr3R_21870349_21871190 chr3R_21870348_21870349;chr3R_21871190_21871191 chr3R_21870166_21870348;chr3R_21871191_21871385 0.00 0.00 0.00 0.00 0.00 0.00 2.02 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.48 0.60 1.26 0.00 2.04 1.57 0.00 0.00 1.43 0.00 0.00 0.00 0.62 0.00 1.94 0.00 0.00 0.87 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG13771 chr2L - chr2L_6663068_6663123;chr2L_6663068_6663131 chr2L_6663068_6663127 chr2L_6662854_6663067;chr2L_6663132_6663374 26.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.00 NA NA 35.48 NA NA NA NA NA 22.22 NA 20.00 NA NA NA NA NA NA NA NA NA NA K intron_retention Tango9,RI_chr3R_7800180_7800239 chr3R - chr3R_7800180_7800267 chr3R_7800179_7800180;chr3R_7800267_7800268 chr3R_7800080_7800179;chr3R_7800268_7800339 0.00 5.00 0.00 0.00 0.00 0.00 0.00 2.78 2.13 NA 0.00 0.00 0.00 0.00 4.17 0.00 NA 8.70 0.00 10.53 0.00 5.88 0.00 0.00 0.00 5.56 5.56 0.00 NA NA 3.45 NA NA 6.67 NA NA 3.23 0.00 0.00 0.00 NA 4.44 0.00 0.00 NA 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA 4.35 4.76 0.00 NA K alternative_donor CG1746,I_chr3R_27044771_27044867,I_chr3R_27044771_27044990,I_chr3R_27044771_27045027,RI_chr3R_27044771_27045110,I_chr3R_27044771_27045132,RI_chr3R_27044771_27045188,I_chr3R_27044771_27045193,RI_chr3R_27044771_27045268 chr3R - chr3R_27044771_27044867;chr3R_27044771_27045188;chr3R_27044771_27045257;chr3R_27044771_27045132;chr3R_27044771_27045027;chr3R_27044771_27044831;chr3R_27044771_27044990;chr3R_27044771_27044895 chr3R_27044771_27045110 chr3R_27044671_27044770;chr3R_27045258_27045273 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention lgs,RI_chr4_463390_463489 chr4 - chr4_458669_458754 chr4_458668_458669;chr4_458754_458755 chr4_458281_458668;chr4_458755_459544 100.00 100.00 96.67 100.00 100.00 100.00 100.00 98.18 100.00 100.00 100.00 98.04 100.00 96.97 100.00 100.00 100.00 100.00 100.00 98.75 96.43 100.00 97.78 100.00 100.00 97.22 100.00 100.00 97.22 100.00 100.00 100.00 97.67 100.00 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 98.00 96.77 97.30 96.43 100.00 100.00 100.00 100.00 100.00 100.00 95.65 97.67 96.97 97.14 100.00 K intron_retention CG5746 chr3R - chr3R_20173317_20173385 chr3R_20173316_20173317;chr3R_20173385_20173386 chr3R_20173127_20173316;chr3R_20173386_20173784 79.25 76.47 82.35 94.81 81.97 80.77 81.08 85.71 78.63 79.17 88.52 83.33 78.72 85.11 83.33 74.36 78.57 73.61 79.25 83.02 83.05 91.06 85.71 77.68 91.03 84.51 94.79 81.72 70.16 73.94 77.36 73.20 75.59 76.81 83.15 84.04 75.77 74.81 79.35 65.67 80.21 81.40 84.09 68.93 63.43 73.02 76.92 63.79 71.31 81.48 75.96 82.35 68.87 80.26 81.82 72.28 75.00 66.49 K jcn_only_AA LanB1,RI_chr2L_7820401_7820448,RI_chr2L_7820405_7820461 chr2L + chr2L_7820401_7820461 chr2L_7820401_7820448 chr2L_7820305_7820400;chr2L_7820462_7820548 1.36 1.46 1.42 1.97 1.77 1.29 1.16 1.83 1.15 1.07 1.54 0.93 1.55 0.98 1.36 1.91 1.52 1.59 1.75 1.80 1.83 0.92 1.04 1.10 1.95 1.15 0.43 1.23 0.75 2.57 0.45 1.58 0.93 0.45 1.16 1.24 0.82 1.31 1.62 0.72 2.50 1.13 1.01 1.06 1.90 1.97 1.65 0.61 1.58 1.67 1.32 1.23 1.10 1.72 1.86 1.43 1.80 1.84 N jcn_only_AD Not1,I_chr2R_5463624_5463682 chr2R - chr2R_5455592_5455673;chr2R_5455592_5456522 chr2R_5455592_5456067 chr2R_5455002_5455591;chr2R_5456523_5457661 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.10 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.51 100.00 100.00 100.00 100.00 100.00 100.00 96.71 96.10 100.00 100.00 100.00 100.00 93.72 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention skd chr3L - chr3L_20995027_20995116 chr3L_20995026_20995027;chr3L_20995116_20995117 chr3L_20994443_20995026;chr3L_20995117_20995297 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 2.70 0.00 NA 0.00 NA NA NA NA NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 10.26 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA K intron_retention CG3529,CG32038,CG3552 chr3L + chr3L_9445271_9445397 chr3L_9445270_9445271;chr3L_9445397_9445398 chr3L_9445258_9445270;chr3L_9445398_9446075 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.45 0.00 0.00 3.03 0.00 7.55 11.11 3.45 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Rab5,I_chr2L_2361586_2364444,RI_chr2L_2361586_2364627,I_chr2L_2361586_2364794 chr2L - chr2L_2361586_2364640;chr2L_2361586_2364480;chr2L_2361586_2365060;chr2L_2361586_2364302;chr2L_2361586_2364594;chr2L_2361586_2364312;chr2L_2361586_2364889 chr2L_2361586_2364836 chr2L_2361486_2361585;chr2L_2365061_2365065 0.00 0.00 0.00 1.41 0.00 0.00 1.59 1.25 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Mapmodulin,I_chr2R_13756314_13756411,RI_chr2R_13756314_13756450,I_chr2R_13756314_13756571 chr2R - chr2R_13756314_13758833 chr2R_13756314_13756571 chr2R_13756214_13756313;chr2R_13758834_13759000 11.70 11.70 12.79 9.02 11.54 11.49 10.13 7.31 10.57 8.00 14.77 7.21 13.40 11.70 11.43 7.25 10.42 19.71 10.66 8.28 8.41 18.99 10.66 12.17 14.49 12.22 13.91 16.90 22.50 11.90 13.33 17.33 10.65 7.42 11.76 12.00 11.24 10.71 12.63 10.88 13.68 9.17 9.88 22.83 20.69 13.67 14.89 10.14 8.20 18.06 11.48 10.99 21.33 15.07 9.03 15.73 25.41 17.74 K jcn_only_AD GlcAT-P,I_chr3L_11172482_11172633 chr3L - chr3L_11172482_11172633 chr3L_11172482_11172629 chr3L_11172382_11172481;chr3L_11172634_11172733 99.22 97.54 97.81 100.00 98.48 100.00 97.12 100.00 100.00 100.00 98.80 100.00 100.00 100.00 99.50 100.00 100.00 100.00 100.00 99.37 99.32 99.12 98.25 98.46 100.00 99.27 99.15 99.04 100.00 97.37 96.50 97.56 98.66 100.00 98.65 100.00 99.54 99.29 98.75 98.32 100.00 99.35 99.22 98.86 98.55 100.00 98.44 99.34 99.04 100.00 98.41 98.55 98.31 96.88 98.86 99.01 98.67 99.34 K intron_retention iPLA2-VIA chr3L - chr3L_9856717_9857106 chr3L_9856716_9856717;chr3L_9857106_9857107 chr3L_9856421_9856716;chr3L_9857107_9857199 96.88 NA NA 70.00 NA NA 100.00 NA 92.86 NA NA 81.82 NA NA NA 100.00 NA NA 100.00 90.00 NA 100.00 NA NA NA NA 91.67 NA 93.75 NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA 92.31 90.00 NA NA NA NA NA 100.00 NA NA NA K intron_retention Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19548057_19552816 chr2R_19548056_19548057;chr2R_19552816_19552817 chr2R_19548042_19548056;chr2R_19552817_19553410 25.00 21.88 27.50 24.62 28.57 24.14 20.37 26.92 26.83 NA 48.00 35.29 13.79 21.21 33.33 33.33 16.67 35.29 23.08 27.03 26.67 42.11 18.92 20.00 31.03 19.51 30.77 50.00 48.48 29.41 25.53 10.53 30.56 24.29 29.63 15.00 20.00 26.32 29.63 23.26 7.41 24.29 20.00 21.05 19.05 20.00 37.50 16.67 25.00 54.55 21.74 26.92 30.77 20.00 25.00 23.53 25.93 17.14 K intron_retention Shawn_Tyler,CG14216,Zw chrX + chrX_19559227_19559284 chrX_19559226_19559227;chrX_19559284_19559285 chrX_19558968_19559226;chrX_19559285_19560902 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 K intron_retention Shawn_Tyler,CG14213 chrX + chrX_19533854_19533928 chrX_19533853_19533854;chrX_19533928_19533929 chrX_19533488_19533853;chrX_19533929_19534123 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 2.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 K jcn_only_AA CG6845,I_chr3L_148414_148465,I_chr3L_148414_148475,I_chr3L_148414_148489 chr3L + chr3L_148414_148465;chr3L_148414_148461;chr3L_148414_148489 chr3L_148414_148475 chr3L_148350_148413;chr3L_148490_148555 4.30 2.70 5.88 4.82 0.00 11.11 0.94 1.39 5.22 13.64 5.56 0.00 6.67 4.35 2.78 3.70 2.27 5.56 0.00 2.22 0.00 4.55 8.70 6.45 NA 6.25 NA NA 3.45 3.23 1.14 NA 8.33 2.22 18.52 NA 0.00 20.00 10.00 6.38 6.25 2.70 4.26 0.00 11.43 4.35 4.76 5.41 5.71 0.00 0.00 8.82 NA NA 1.37 0.00 0.00 2.33 K intron_retention Tfb1 chr2R + chr2R_10252441_10252500 chr2R_10252440_10252441;chr2R_10252500_10252501 chr2R_10251478_10252440;chr2R_10252501_10252676 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 K alternative_donor CG11486,RE_chr3L_3084894_3085203 chr3L + chr3L_3088120_3088191;chr3L_3088129_3088191;chr3L_3088124_3088191 chr3L_3088139_3088191 chr3L_3088192_3088663;chr3L_3087957_3088119 0.65 0.62 0.70 1.36 1.67 0.00 0.00 0.55 1.26 1.52 0.93 0.47 0.00 2.88 2.17 0.72 1.03 0.76 0.00 1.52 0.00 0.00 0.93 0.59 0.00 0.79 0.65 0.00 0.00 0.00 0.79 0.99 0.00 1.06 0.00 0.75 0.93 0.75 1.04 0.00 0.00 1.28 1.08 0.00 0.54 1.66 0.44 0.00 0.44 1.41 0.90 0.00 0.70 0.00 0.00 0.00 1.46 0.60 K jcn_only_AD rut,I_chrX_14718760_14718821 chrX - chrX_14686462_14687506 chrX_14686462_14687158 chrX_14685281_14686461;chrX_14687507_14688185 93.94 80.95 90.48 75.76 90.48 81.82 NA 84.85 100.00 100.00 NA 92.31 NA NA 96.88 NA 96.15 87.80 NA 90.91 86.36 69.09 85.71 97.56 NA NA NA NA 79.41 96.15 95.00 92.00 95.40 94.44 100.00 92.00 100.00 87.50 98.18 100.00 NA 93.75 NA 97.87 96.61 100.00 95.45 93.33 94.12 NA NA NA NA NA 90.00 NA NA 100.00 K intron_retention CG5174,F_chr2R_14309059_14311473 chr2R + chr2R_14311992_14312376 chr2R_14311991_14311992;chr2R_14312376_14312377 chr2R_14311831_14311991;chr2R_14312377_14312539 3.23 5.56 4.35 2.62 4.84 2.90 1.81 3.23 1.36 4.88 0.00 3.65 6.10 6.85 6.67 4.71 1.32 5.56 4.60 3.47 3.37 2.15 4.05 2.56 8.33 0.00 5.19 6.06 0.00 0.00 4.21 7.69 3.51 5.00 0.00 2.00 2.13 0.00 1.98 3.49 5.17 3.54 3.03 2.90 3.23 0.00 2.70 6.25 2.39 1.92 1.28 0.00 0.00 1.59 4.92 1.47 0.00 4.94 K jcn_only_AD heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27691048_27691484 chr3R_27691048_27691472 chr3R_27690854_27691047;chr3R_27691485_27691758 88.89 88.10 85.71 87.18 91.67 87.50 NA 88.89 88.89 83.33 80.00 82.35 91.30 94.74 94.12 NA NA 94.59 80.00 86.36 100.00 88.64 93.88 81.82 91.67 86.84 92.31 90.91 92.31 92.86 90.48 80.00 87.50 91.43 87.88 78.12 92.59 93.55 87.04 46.51 92.86 85.14 93.10 85.71 94.29 93.18 90.91 93.10 90.48 82.35 94.87 84.00 89.36 82.14 97.56 88.89 85.71 88.24 K intron_retention MRP,I_chr2L_12724912_12725088,F_chr2L_12727117_12736035 chr2L + chr2L_12724912_12725711 chr2L_12724911_12724912;chr2L_12725711_12725712 chr2L_12724812_12724911;chr2L_12725712_12725796 5.34 3.95 7.02 12.09 4.61 7.96 4.36 8.22 5.49 6.19 6.96 7.35 3.98 6.96 6.94 7.29 6.18 4.27 7.84 5.26 3.61 3.86 6.19 3.11 5.56 1.42 4.42 6.49 5.30 7.61 3.69 5.45 9.80 6.37 4.52 10.55 3.86 3.43 3.79 8.85 7.81 4.24 6.57 4.52 0.00 3.03 3.10 15.00 5.46 2.98 4.79 4.37 6.48 0.00 4.96 5.34 2.77 9.86 K alternative_acceptor CG1599,I_chr2R_5729744_5729805 chr2R - chr2R_5729744_5729805;chr2R_5729673_5729805 chr2R_5729731_5729805 chr2R_5729806_5729905;chr2R_5729644_5729672 0.00 0.00 0.00 1.60 0.00 0.00 3.08 0.72 0.00 0.00 4.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 1.20 0.70 0.00 1.41 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 3.45 0.66 0.00 4.17 0.00 0.00 0.00 0.00 3.03 1.40 1.39 0.00 0.00 2.82 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 3.57 K jcn_only_AD Spase25,I_chrX_11379530_11379593 chrX + chrX_11379465_11379593 chrX_11379530_11379593 chrX_11379594_11379693;chrX_11379430_11379464 0.39 0.00 0.00 0.00 0.59 0.39 0.00 0.00 0.23 1.68 1.38 0.22 0.00 0.00 0.35 0.48 0.00 0.39 0.00 0.33 0.00 0.88 0.57 1.69 1.67 0.37 0.57 0.00 1.22 0.00 0.32 0.51 1.10 0.50 1.25 0.00 1.49 0.85 0.41 0.49 0.66 0.46 0.00 0.00 0.74 0.00 0.65 0.35 0.45 0.00 0.60 1.27 0.64 0.66 0.00 0.00 0.46 0.15 K jcn_only_AA Iswi chr2R + chr2R_8524243_8524328;chr2R_8524243_8524316 chr2R_8524243_8524348 chr2R_8524226_8524242;chr2R_8524349_8524495 100.00 94.59 98.04 99.05 100.00 97.30 98.86 96.55 99.35 NA 100.00 98.77 95.74 97.67 98.15 100.00 100.00 97.50 98.59 98.96 100.00 90.91 100.00 94.44 NA 100.00 100.00 NA NA 100.00 94.74 NA NA 100.00 100.00 NA 100.00 100.00 100.00 96.55 NA 97.85 100.00 100.00 NA 100.00 100.00 100.00 97.73 100.00 100.00 100.00 NA NA 100.00 100.00 96.30 100.00 K intron_retention CG8399,E_chr2R_11909562_11911687,E_chr2R_11909562_11911694,E_chr2R_11909564_11911694 chr2R + chr2R_11909882_11909948 chr2R_11909881_11909882;chr2R_11909948_11909949 chr2R_11909443_11909881;chr2R_11909949_11910283 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 13.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette Rab10,I_chrX_20122832_20123581 chrX + chrX_20122832_20123581 chrX_20122832_20123311;chrX_20123512_20123581 chrX_20123312_20123511 chrX_20122732_20122831;chrX_20123582_20123671 100.00 100.00 100.00 99.56 100.00 99.23 99.53 100.00 100.00 100.00 100.00 99.62 100.00 100.00 100.00 99.50 100.00 100.00 100.00 100.00 99.35 100.00 100.00 100.00 100.00 100.00 100.00 99.03 95.28 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.56 99.28 100.00 99.50 100.00 100.00 100.00 100.00 100.00 99.31 100.00 99.17 100.00 99.22 99.38 100.00 100.00 100.00 99.44 100.00 100.00 100.00 K intron_retention CG31935 chr2L - chr2L_1596422_1609485 chr2L_1596421_1596422;chr2L_1609485_1609486 chr2L_1595892_1596421;chr2L_1609486_1609517 0.00 NA NA NA NA NA 13.33 NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA 13.04 NA NA NA NA NA 7.14 NA 0.00 NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA 0.00 K alternative_last_exon CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_264375_264441;chr4_264375_265805 chr4_264375_265043 chr4_264442_264510;chr4_265806_266712 chr4_265044_265460 chr4_264260_264374 1.32 2.44 0.00 2.08 2.94 2.56 3.39 1.00 0.86 0.00 3.03 2.41 0.00 2.27 1.89 3.33 0.00 4.08 1.47 1.03 2.94 0.00 3.45 2.70 6.25 0.00 3.12 0.00 0.00 4.76 1.32 0.00 3.70 2.15 0.00 0.00 0.00 0.00 0.00 2.08 0.00 1.04 0.00 0.00 0.00 2.08 0.00 2.56 3.09 0.00 2.33 0.00 3.85 0.00 1.49 0.00 0.00 1.82 K jcn_only_AD CG9932,I_chr2L_13025498_13027193,I_chr2L_13031395_13035824 chr2L - chr2L_13025498_13026528;chr2L_13025498_13027065 chr2L_13025498_13027344 chr2L_13025398_13025497;chr2L_13027345_13027744 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL18A,I_chr2R_13434492_13434554,I_chr2R_13434492_13434576 chr2R - chr2R_13434492_13434554 chr2R_13434491_13434492;chr2R_13434554_13434555 chr2R_13434392_13434491;chr2R_13434555_13434654 8.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.56 NA NA NA NA NA NA 8.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 23.53 K alternative_donor eIF-5A,I_chr2R_19945430_19946454,I_chr2R_19945576_19946006,I_chr2R_19945723_19946006,I_chr2R_19945783_19946006,I_chr2R_19945852_19946006,I_chr2R_19945875_19946006,I_chr2R_19945921_19946006,I_chr2R_19946299_19946454,I_chr2R_19946657_19946733,I_chr2R_19948517_19948682 chr2R + chr2R_19945576_19946006;chr2R_19945426_19946006;chr2R_19945875_19946006;chr2R_19945430_19946006 chr2R_19945921_19946006 chr2R_19946007_19946106;chr2R_19945343_19945425 0.07 0.17 0.06 0.04 0.00 0.00 0.06 0.09 0.11 0.35 0.00 0.03 0.00 0.17 0.05 0.05 0.00 0.00 0.00 0.03 0.00 0.22 0.17 0.35 0.00 0.00 0.26 0.25 0.17 0.22 0.06 0.00 0.09 0.09 0.39 0.19 0.26 0.00 0.10 0.05 0.00 0.04 0.00 0.15 0.07 0.12 0.13 0.22 0.04 0.26 0.23 0.24 0.09 0.00 0.05 0.00 0.12 0.14 K jcn_only_AD CG3714,I_chr2L_4190825_4191774,I_chr2L_4192969_4193324,I_chr2L_4195905_4196470,I_chr2L_4196780_4197306,RI_chr2L_4196780_4197951,I_chr2L_4196815_4197306,I_chr2L_4196815_4197951 chr2L - chr2L_4196780_4197146 chr2L_4196780_4197095 chr2L_4196715_4196779;chr2L_4197147_4197191 1.79 2.70 0.00 4.08 0.00 4.35 1.32 0.00 2.38 0.00 0.00 1.37 0.00 3.70 0.00 2.90 0.00 0.00 2.13 5.26 4.76 1.96 3.23 0.00 2.04 0.00 0.00 3.17 2.70 6.25 3.70 NA 0.00 2.50 2.70 0.00 0.00 0.00 0.00 1.79 2.86 0.00 2.56 1.09 NA 0.00 NA 4.00 0.00 3.23 1.79 2.00 NA NA 5.56 0.00 0.00 NA K jcn_only_AD Cg25C,I_chr2L_5029811_5029873 chr2L + chr2L_5029747_5030136;chr2L_5029637_5030136 chr2L_5029811_5030136 chr2L_5030137_5030237;chr2L_5029620_5029636 70.16 86.84 70.49 56.41 58.70 56.10 71.64 75.00 68.75 75.00 88.57 82.54 70.10 72.55 69.62 77.78 67.44 59.38 60.53 72.26 82.47 64.10 79.75 87.50 73.08 64.52 75.00 73.53 60.34 NA 47.69 51.52 70.91 61.98 81.58 65.31 71.43 78.26 85.42 60.00 70.21 47.75 77.36 60.26 53.33 66.23 85.71 58.21 58.19 68.42 92.75 62.50 46.99 86.36 58.42 82.05 80.85 55.56 K intron_retention CG5554,gbb chr2R + chr2R_19732855_19733057 chr2R_19732854_19732855;chr2R_19733057_19733058 chr2R_19732538_19732854;chr2R_19733058_19733219 1.33 0.00 1.16 2.65 1.18 1.34 1.69 1.09 1.25 0.00 2.94 1.86 0.00 0.00 1.73 0.72 0.00 1.34 2.10 1.33 0.74 3.53 1.23 0.43 2.58 2.63 5.07 2.48 3.45 0.00 3.12 1.89 0.63 2.30 0.84 0.00 1.39 0.97 1.48 2.88 0.75 2.13 1.80 0.62 0.98 1.68 1.76 1.32 1.99 1.73 2.14 0.00 0.00 1.27 1.20 1.25 0.46 1.55 K intron_retention CG32103,I_chr3L_12398261_12403200 chr3L - chr3L_12398261_12401209 chr3L_12398260_12398261;chr3L_12401209_12401210 chr3L_12398161_12398260;chr3L_12401210_12401763 1.33 0.00 1.22 2.25 2.70 2.99 2.27 4.26 2.48 0.00 0.00 3.88 1.67 0.00 2.04 5.95 0.00 2.70 5.00 1.69 2.90 4.69 1.69 0.00 0.00 0.00 3.70 7.25 5.63 0.00 0.00 0.00 3.03 3.74 0.00 0.00 1.40 0.00 1.65 1.00 0.00 1.50 0.00 1.20 0.00 0.00 0.00 1.37 1.44 0.00 0.99 1.33 0.00 0.00 3.80 0.00 1.47 0.00 K jcn_only_AD Mgat2,I_chr3R_25845406_25845472,I_chr3R_25845406_25846373 chr3R - chr3R_25845406_25845472;chr3R_25845406_25846373;chr3R_25845406_25847670 chr3R_25845406_25847371 chr3R_25845317_25845405;chr3R_25847671_25847898 93.10 96.30 95.45 88.46 NA NA NA NA 93.10 NA NA 92.00 NA NA NA 90.91 NA NA NA 85.37 NA 58.06 92.11 96.55 NA NA 95.24 NA 65.22 95.00 NA NA NA 92.31 95.65 96.43 89.29 95.24 85.19 97.50 NA 90.00 NA 96.43 NA 95.83 87.10 89.19 96.00 NA 93.55 NA 100.00 NA NA 92.00 NA NA K jcn_only_AD CG15609,C_chr2R_12899322_12900789,I_chr2R_12902708_12903184 chr2R - chr2R_12896448_12897557 chr2R_12896448_12897005 chr2R_12896351_12896447;chr2R_12897558_12897678 0.00 0.00 0.00 1.06 0.00 0.00 1.77 0.00 0.57 1.83 0.00 0.00 0.00 3.03 0.00 2.15 0.00 0.00 2.20 0.83 1.22 0.00 0.00 0.60 0.00 1.04 0.98 0.00 0.00 0.00 2.97 1.00 0.94 0.00 0.00 0.00 0.00 0.85 0.00 1.44 1.35 0.00 0.00 0.00 0.00 0.67 0.00 2.36 0.61 1.01 0.74 0.00 2.78 0.00 0.00 0.96 0.00 0.93 K jcn_only_AD miple2,I_chr3L_271508_273549,I_chr3L_271695_273549,I_chr3L_271922_273549,I_chr3L_274251_274594 chr3L + chr3L_271792_273549;chr3L_271217_273549;chr3L_271695_273549 chr3L_273391_273549 chr3L_273550_273649;chr3L_271209_271216 2.50 5.77 4.44 2.02 2.94 0.00 0.00 8.70 1.75 3.45 NA 0.00 NA 6.06 0.00 0.00 0.00 NA 4.55 2.56 NA 2.17 6.59 0.00 2.17 0.00 0.00 6.25 5.13 2.50 5.56 0.00 5.13 4.12 0.00 5.56 6.25 0.00 0.00 3.66 2.04 2.74 3.33 4.30 0.00 1.96 2.97 3.85 2.52 3.12 3.53 0.00 1.52 0.00 0.00 1.43 6.76 0.00 K intron_retention Nnf1b,I_chr2L_810759_810816,KH1 chr2L + chr2L_811022_811088 chr2L_811021_811022;chr2L_811088_811089 chr2L_810817_811021;chr2L_811089_811203 4.38 4.88 4.35 6.67 5.71 4.55 7.14 5.41 6.32 NA 0.00 5.41 0.00 5.00 3.92 6.15 6.06 5.26 0.00 3.41 0.00 16.67 0.00 7.50 0.00 7.14 4.76 0.00 6.25 0.00 5.71 3.33 9.5