The code has gone through a major overhaul enabling work with large datasets and streamlining functionality and usability. Jevtrace2 is distributed as a single executable JAR file with no installation required.
Jevtrace is a implementation of the evolutionary trace method. The software expands on the evolutionary trace by allowing manipulation of the input data and parameters of analysis, and presents a number of novel tree inspired analysis of protein families. Jevtrace includes a multivalent graphical browser for multiple sequence alignment, phylogeny, and structure, as well as underlying object and algorithmic infrastructure.
Structure visualizaton is designated to WebMol , allowing live mapping of results onto protein structures. The combination of Jevtrace+WebMol can be used generically as a viewer for combinations of molecular phylogeny, sequence alignment, and structure data.
Jevtrace is platform independent and has been tested on
, , , .
Using a text-based sequence coloring format (SeqSel), Jevtrace graphical results can be saved and imported into other software:
Jevtrace is packaged and distributed with . The binary executables are free for academic use. Download here.
For commercial licenses please contact the UCSF Office of Technology Management (OTM).
Evolutionary Trace Servers
Email bugs, comments, suggestions: